Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 108 of 205
Found at i:32109662 original size:41 final size:39
Alignment explanation
Indices: 32109602--32109791 Score: 204
Period size: 41 Copynumber: 4.7 Consensus size: 39
32109592 TGATTGAATG
* * *
32109602 TAATACAGACGTTACGTCTAGCAGGCTTAATGCCGGTGAA
1 TAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG-A
32109642 GTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 -TAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
*
32109682 TACATTTTAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 TA-A-TTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
* *
32109723 TACATTTCAGACTATATGTCTAGCAGGC-TAAGTGCCGGTGTA
1 TA-A-TTCAGACTTTAAGTCTAGCAGGCTTAA-TGCCGGTG-A
* *
32109765 CTGAA-TCAGGCTTTAAGCCTAGCAGGC
1 -T-AATTCAGACTTTAAGTCTAGCAGGC
32109792 AAATTGCCGG
Statistics
Matches: 132, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
39 2 0.02
40 5 0.04
41 121 0.92
42 1 0.01
43 2 0.02
44 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (39 bp):
TAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
Found at i:32109717 original size:82 final size:82
Alignment explanation
Indices: 32109608--32109762 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 82
32109598 AATGTAATAC
* *
32109608 AGACGTTACGTCTAGCAGGCTTAATGCCGGTGAAGTA-A-TTCAGACTTTAAGTCTAGCAGGCTT
1 AGACGTTAAGTCTAGCAGGCTTAATGCCGGTG-A-TACATTTCAGACTATAAGTCTAGCAGGC-T
32109671 AA-TGCCGGTGATACATTTT
63 AAGTGCCGGTGATACATTTT
* *
32109690 AGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTAAG
1 AGACGTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAAGTCTAGCAGGCTAAG
32109755 TGCCGGTG
66 TGCCGGTG
32109763 TACTGAATCA
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
80 2 0.03
81 5 0.08
82 59 0.89
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (82 bp):
AGACGTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAAGTCTAGCAGGCTAAG
TGCCGGTGATACATTTT
Found at i:32110941 original size:39 final size:40
Alignment explanation
Indices: 32110892--32110985 Score: 122
Period size: 39 Copynumber: 2.4 Consensus size: 40
32110882 GGGCTTAGGC
32110892 TTTTT-GCGGCGCTTTTCA-AAAAACGCTGCTAATGCTT-A
1 TTTTTAGCGGCG-TTTTCATAAAAACGCTGCTAATGCTTGA
* *
32110930 TTTTTAGCGGCGTTTTTATAAAAGCGCTGCTAATGCTTGA
1 TTTTTAGCGGCGTTTTCATAAAAACGCTGCTAATGCTTGA
* *
32110970 TTTTTAGTGGCATTTT
1 TTTTTAGCGGCGTTTT
32110986 TTGTCCAAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
38 10 0.20
39 24 0.49
40 15 0.31
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.43
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTCATAAAAACGCTGCTAATGCTTGA
Found at i:32113077 original size:24 final size:23
Alignment explanation
Indices: 32113039--32113093 Score: 94
Period size: 24 Copynumber: 2.4 Consensus size: 23
32113029 ACAAAGATAG
32113039 TTTTAA-ATAAACTATATCTTTA
1 TTTTAAGATAAACTATATCTTTA
32113061 TTTTAAGATATAACTATATCTTTA
1 TTTTAAGATA-AACTATATCTTTA
32113085 TTTTAAGAT
1 TTTTAAGAT
32113094 TTTACCTAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 6 0.19
23 3 0.10
24 22 0.71
ACGTcount: A:0.38, C:0.07, G:0.04, T:0.51
Consensus pattern (23 bp):
TTTTAAGATAAACTATATCTTTA
Found at i:32116597 original size:29 final size:29
Alignment explanation
Indices: 32116555--32116611 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
32116545 TGAAAAGTGA
32116555 CATGCCAATAGGGTTTTGTGCACGCTTGG
1 CATGCCAATAGGGTTTTGTGCACGCTTGG
32116584 CATGCCAATAGGGTTTTGTGCACGCTTG
1 CATGCCAATAGGGTTTTGTGCACGCTTG
32116612 TATGGGATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.32
Consensus pattern (29 bp):
CATGCCAATAGGGTTTTGTGCACGCTTGG
Found at i:32117643 original size:36 final size:34
Alignment explanation
Indices: 32117570--32117683 Score: 104
Period size: 34 Copynumber: 3.3 Consensus size: 34
32117560 GAATGTATTT
* * * * *
32117570 ATATATATAATTTTTCAAATACATATGCCAAAAGC
1 ATATATAT-ACTTATCAACTACATATGCCGAATGC
*
32117605 ATATATTTATACTTATCAACTACATGTGCCGAATGC
1 ATATA--TATACTTATCAACTACATATGCCGAATGC
* *
32117641 ATATATATACTTAT-AATCCACATATGTCGAATGC
1 ATATATATACTTATCAA-CTACATATGCCGAATGC
*
32117675 ATACATATA
1 ATATATATA
32117684 TATATACAAC
Statistics
Matches: 66, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
33 2 0.03
34 31 0.47
35 5 0.08
36 25 0.38
37 3 0.05
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (34 bp):
ATATATATACTTATCAACTACATATGCCGAATGC
Found at i:32117920 original size:41 final size:42
Alignment explanation
Indices: 32117851--32118136 Score: 240
Period size: 41 Copynumber: 6.6 Consensus size: 42
32117841 ATTTAAACAG
** *
32117851 ATTCACCGATACTTAGCCTGCTAAGCTTATAACCTGATTCAA
1 ATTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAA
* * *
32117893 ATT-ACTGGCACTTAGCCTACTAGGCTTATAACCTGATTCAG
1 ATTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAA
* * ** * *
32117934 A-TCACCGGCAGTTAGCCAGCTAACCCAATGTATATAATCACTTAATTTAAACAG
1 ATTCACCGGCACTTAGCCTGCT-AGGC----T-TATAA-C-C-TGA-TT---CAA
** *
32117988 ATTCACCGATACTTAGCCTGCTAAGCTTATAACCTGATTC-A
1 ATTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAA
* *
32118029 GTTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAG
1 ATTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAA
*
32118071 A-TCACCGGCATTTAGCCTGCTAGGCTTATAACCTGATTC-A
1 ATTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAA
* *
32118111 GTTCACCGGCACTTAGCTTGCTAGGC
1 ATTCACCGGCACTTAGCCTGCTAGGC
32118137 GCAAAGCCTG
Statistics
Matches: 195, Mismatches: 32, Indels: 35
0.74 0.12 0.13
Matches are distributed among these distances:
40 1 0.01
41 142 0.73
42 6 0.03
45 2 0.01
46 3 0.02
47 6 0.03
48 2 0.01
49 6 0.03
50 3 0.02
51 2 0.01
54 6 0.03
55 16 0.08
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (42 bp):
ATTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAA
Found at i:32118065 original size:137 final size:137
Alignment explanation
Indices: 32117819--32118092 Score: 487
Period size: 137 Copynumber: 2.0 Consensus size: 137
32117809 ATATATATAT
32117819 ACCCAATGTATATAATCACTTAATTTAAACAGATTCACCGATACTTAGCCTGCTAAGCTTATAAC
1 ACCCAATGTATATAATCACTTAATTTAAACAGATTCACCGATACTTAGCCTGCTAAGCTTATAAC
*
32117884 CTGATTCAAATTACTGGCACTTAGCCTACTAGGCTTATAACCTGATTCAGATCACCGGCAGTTAG
66 CTGATTCAAATTACCGGCACTTAGCCTACTAGGCTTATAACCTGATTCAGATCACCGGCAGTTAG
32117949 CCAGCTA
131 CCAGCTA
32117956 ACCCAATGTATATAATCACTTAATTTAAACAGATTCACCGATACTTAGCCTGCTAAGCTTATAAC
1 ACCCAATGTATATAATCACTTAATTTAAACAGATTCACCGATACTTAGCCTGCTAAGCTTATAAC
* * *
32118021 CTGATTC-AGTTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGATCACCGGCATTTA
66 CTGATTCAAATT-ACCGGCACTTAGCCTACTAGGCTTATAACCTGATTCAGATCACCGGCAGTTA
*
32118085 GCCTGCTA
130 GCCAGCTA
32118093 GGCTTATAAC
Statistics
Matches: 131, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
136 3 0.02
137 128 0.98
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.30
Consensus pattern (137 bp):
ACCCAATGTATATAATCACTTAATTTAAACAGATTCACCGATACTTAGCCTGCTAAGCTTATAAC
CTGATTCAAATTACCGGCACTTAGCCTACTAGGCTTATAACCTGATTCAGATCACCGGCAGTTAG
CCAGCTA
Found at i:32118147 original size:41 final size:41
Alignment explanation
Indices: 32117989--32118136 Score: 242
Period size: 41 Copynumber: 3.6 Consensus size: 41
32117979 TTTAAACAGA
** *
32117989 TTCACCGATACTTAGCCTGCTAAGCTTATAACCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAG
32118030 TTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAG
* *
32118071 ATCACCGGCATTTAGCCTGCTAGGCTTATAACCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAG
*
32118112 TTCACCGGCACTTAGCTTGCTAGGC
1 TTCACCGGCACTTAGCCTGCTAGGC
32118137 GCAAAGCCTG
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 99 1.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (41 bp):
TTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAG
Found at i:32118558 original size:23 final size:23
Alignment explanation
Indices: 32118530--32118576 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
32118520 ATAACCATAC
*
32118530 ACATTCGAACCTCACATATACAT
1 ACATTCAAACCTCACATATACAT
32118553 ACATTCAAACCTCACATATACAT
1 ACATTCAAACCTCACATATACAT
32118576 A
1 A
32118577 TATAAATTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.30, G:0.02, T:0.26
Consensus pattern (23 bp):
ACATTCAAACCTCACATATACAT
Found at i:32127133 original size:51 final size:51
Alignment explanation
Indices: 32126939--32127133 Score: 218
Period size: 51 Copynumber: 3.8 Consensus size: 51
32126929 GAAGTTGCTA
* * *
32126939 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATG-ATA-
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGG-ATGAAAAT
* * ***
32126989 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGCGTA-CTGGAT-AGCTT
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GGATGAAAAT
* * *
32127039 CGATCACGTATGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAAT
1 -GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAAT
* *
32127091 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGAATCGG
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGG
32127134 GTATCATTTA
Statistics
Matches: 120, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
49 3 0.03
50 38 0.32
51 76 0.63
52 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAAT
Found at i:32137804 original size:40 final size:40
Alignment explanation
Indices: 32137760--32138064 Score: 508
Period size: 40 Copynumber: 7.7 Consensus size: 40
32137750 GCAAACACAT
* * *
32137760 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
32137800 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
32137840 TTGCCTTCGGGTCATAGCCCGGA-ATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
32137879 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
32137919 TTGCCTTCGGGTCATAGCCCGGA-ATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
32137958 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
32137998 TTGCCTTCGGGTCATAGCCCGGA-ATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
32138037 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
32138065 TCCAATGCTC
Statistics
Matches: 248, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
39 111 0.45
40 137 0.55
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:32137884 original size:79 final size:79
Alignment explanation
Indices: 32137760--32138064 Score: 547
Period size: 79 Copynumber: 3.8 Consensus size: 79
32137750 GCAAACACAT
* * *
32137760 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCATAGCCCGGA-ATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
32137825 TATCAACTCGCATAA
65 TATCAACTCGCATAA
*
32137840 TTGCCTTCGGGTCATAGCCCGGAATATCAACTTGCATAATTGCCTTCGGGTCTTAGCCCGGATAT
1 TTGCCTTCGGGTCATAGCCCGGAATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATAT
32137905 ATCAACTCGCATAA
66 ATCAACTCGCATAA
*
32137919 TTGCCTTCGGGTCATAGCCCGGAATATCAACTCGCGTAATTGCCTTCGGGTCTTAGCCCGGATAT
1 TTGCCTTCGGGTCATAGCCCGGAATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATAT
32137984 ATCAACTCGCATAA
66 ATCAACTCGCATAA
*
32137998 TTGCCTTCGGGTCATAGCCCGGAATATCAACTCGCGTAATTGCCTTCGGGTCTTAGCCCGGATAT
1 TTGCCTTCGGGTCATAGCCCGGAATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATAT
32138063 AT
66 AT
32138065 TCCAATGCTC
Statistics
Matches: 221, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
79 200 0.90
80 21 0.10
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (79 bp):
TTGCCTTCGGGTCATAGCCCGGAATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATAT
ATCAACTCGCATAA
Found at i:32140878 original size:50 final size:50
Alignment explanation
Indices: 32140760--32140882 Score: 133
Period size: 50 Copynumber: 2.5 Consensus size: 50
32140750 ACATTAGGGG
* * * * *
32140760 GATGAG-AC-CCCATGTAAGACCATGTCTGGGACATGGCGTTGGTATCGA
1 GATGAGAACTCCCATGTAAGACCATGTCTGGAACATGGCATGGGCACCGA
* ***
32140808 GATGAGAAGTCCCCCATAAGACCATGTCTGGAACATGGCATGGGCACCGA
1 GATGAGAACTCCCATGTAAGACCATGTCTGGAACATGGCATGGGCACCGA
* *
32140858 TATGAGAACTCTCATGTAAGACCAT
1 GATGAGAACTCCCATGTAAGACCAT
32140883 ATCTAGGATA
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
48 6 0.10
49 1 0.02
50 51 0.88
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (50 bp):
GATGAGAACTCCCATGTAAGACCATGTCTGGAACATGGCATGGGCACCGA
Found at i:32151463 original size:42 final size:43
Alignment explanation
Indices: 32151373--32151468 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 43
32151363 CTAACCATAT
* * * * * *
32151373 ATTTATGGCAGCTTGACTGTAATTACTGGTGGCTTGTCCAGAT
1 ATTTCTGGCAGCTTAACTGCAATAACTGGTGGCTTGTCCACAG
*
32151416 CTTTCTGGCAGCTTAACTGCAA-AACTGGTGGCTTGTCCACAG
1 ATTTCTGGCAGCTTAACTGCAATAACTGGTGGCTTGTCCACAG
*
32151458 ATTTCTAGCAG
1 ATTTCTGGCAG
32151469 TATATCTACA
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 26 0.59
43 18 0.41
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (43 bp):
ATTTCTGGCAGCTTAACTGCAATAACTGGTGGCTTGTCCACAG
Found at i:32153573 original size:21 final size:22
Alignment explanation
Indices: 32153548--32153590 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
32153538 AAAAAAATTG
* *
32153548 AATTATTTAATAT-TATTTTTA
1 AATTAGTTAAAATGTATTTTTA
32153569 AATTAGTTAAAATGTATTTTTA
1 AATTAGTTAAAATGTATTTTTA
32153591 TTTTATAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (22 bp):
AATTAGTTAAAATGTATTTTTA
Found at i:32153646 original size:20 final size:20
Alignment explanation
Indices: 32153621--32153660 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
32153611 ATATAACCAT
32153621 ATAAACACAACCCAATAACC
1 ATAAACACAACCCAATAACC
*
32153641 ATAAACTCAACCCAATAACC
1 ATAAACACAACCCAATAACC
32153661 CAAGGTTGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.53, C:0.35, G:0.00, T:0.12
Consensus pattern (20 bp):
ATAAACACAACCCAATAACC
Found at i:32154463 original size:50 final size:49
Alignment explanation
Indices: 32154402--32154500 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 49
32154392 AATAAAGTTT
*
32154402 GTCATGTATTATGTAACTCC-TATATTAATTCAGTTTGCATCTTAAATTAA
1 GTCATGCATTATGTAAC-CCATATATTAATTCAGTTTGCATCTT-AATTAA
* * * *
32154452 GTCATGCATTATGTAACCCATTTGTTTATTTAGTTTGCATCTTAATTAA
1 GTCATGCATTATGTAACCCATATATTAATTCAGTTTGCATCTTAATTAA
32154501 ACTATGCATT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
49 8 0.19
50 35 0.81
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.45
Consensus pattern (49 bp):
GTCATGCATTATGTAACCCATATATTAATTCAGTTTGCATCTTAATTAA
Found at i:32157354 original size:18 final size:18
Alignment explanation
Indices: 32157328--32157376 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
32157318 TTTTAAAAAT
*
32157328 CACAAGAAATAAATCTTA
1 CACAAGAAACAAATCTTA
* *
32157346 CAGAAGAAACAAATCTTG
1 CACAAGAAACAAATCTTA
32157364 CACAAGAAACAAA
1 CACAAGAAACAAA
32157377 CTCCCAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.57, C:0.18, G:0.10, T:0.14
Consensus pattern (18 bp):
CACAAGAAACAAATCTTA
Found at i:32161680 original size:13 final size:13
Alignment explanation
Indices: 32161643--32161683 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
32161633 TTTTGCTTTA
32161643 CTGCTTTGCTCTG
1 CTGCTTTGCTCTG
32161656 CT--TTGTGCCTCTG
1 CTGCTT-TG-CTCTG
32161669 CTGCTTTGCTCTG
1 CTGCTTTGCTCTG
32161682 CT
1 CT
32161684 TTGCTTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
11 2 0.08
12 2 0.08
13 16 0.67
14 2 0.08
15 2 0.08
ACGTcount: A:0.00, C:0.32, G:0.22, T:0.46
Consensus pattern (13 bp):
CTGCTTTGCTCTG
Found at i:32172509 original size:2 final size:2
Alignment explanation
Indices: 32172504--32172552 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
32172494 TTTTTTATAA
32172504 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
32172546 AG AG AG A
1 AG AG AG A
32172553 TCAGTGTAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:32178922 original size:22 final size:21
Alignment explanation
Indices: 32178884--32178928 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
32178874 TTGATCCTCA
* * *
32178884 CTTTTCTTTCTTTTACATTTT
1 CTTTTCTTTCATGTACAATTT
32178905 CTTTTCTTTTCATGTACAATTT
1 CTTTTC-TTTCATGTACAATTT
32178927 CT
1 CT
32178929 AGTAAGAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.13, C:0.20, G:0.02, T:0.64
Consensus pattern (21 bp):
CTTTTCTTTCATGTACAATTT
Found at i:32198561 original size:13 final size:13
Alignment explanation
Indices: 32198543--32198579 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
32198533 GAAGCATGCG
* *
32198543 TAAAACTTATCTT
1 TAAAACATAACTT
32198556 TAAAACATAACTT
1 TAAAACATAACTT
32198569 TAAAACATAAC
1 TAAAACATAAC
32198580 AACACACATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.32
Consensus pattern (13 bp):
TAAAACATAACTT
Found at i:32204088 original size:35 final size:35
Alignment explanation
Indices: 32204042--32204112 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
32204032 TATAGTTTCC
32204042 TAAGGAGGTGTTGGGAAAGGAGTTTGCACATTTGG
1 TAAGGAGGTGTTGGGAAAGGAGTTTGCACATTTGG
32204077 TAAGGAGGTGTTGGGAAAGGAGTTTGCACATTTGG
1 TAAGGAGGTGTTGGGAAAGGAGTTTGCACATTTGG
32204112 T
1 T
32204113 GTTCCAAGAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.25, C:0.06, G:0.39, T:0.30
Consensus pattern (35 bp):
TAAGGAGGTGTTGGGAAAGGAGTTTGCACATTTGG
Found at i:32206718 original size:42 final size:41
Alignment explanation
Indices: 32206672--32206793 Score: 108
Period size: 42 Copynumber: 3.2 Consensus size: 41
32206662 TATAAAAAAA
32206672 TTTATAAAGTGTACAATAAATTTTATGATTTTTATAATACTT
1 TTTATAAAG-GTACAATAAATTTTATGATTTTTATAATACTT
*
32206714 TTTATAAA--T--AAT--A--TGAT--TTTTTACTACA-AC--
1 TTTATAAAGGTACAATAAATTTTATGATTTTTA-TA-ATACTT
32206744 TTTATAAAGGGTACAATAAATTTTATGATTTTTATAATACTT
1 TTTATAAA-GGTACAATAAATTTTATGATTTTTATAATACTT
32206786 TTTATAAA
1 TTTATAAA
32206794 TAATATGATT
Statistics
Matches: 62, Mismatches: 2, Indels: 32
0.65 0.02 0.33
Matches are distributed among these distances:
30 8 0.13
31 6 0.10
32 4 0.06
33 5 0.08
35 4 0.06
37 4 0.06
39 5 0.08
40 4 0.06
41 6 0.10
42 16 0.26
ACGTcount: A:0.39, C:0.06, G:0.07, T:0.48
Consensus pattern (41 bp):
TTTATAAAGGTACAATAAATTTTATGATTTTTATAATACTT
Found at i:32206721 original size:30 final size:30
Alignment explanation
Indices: 32206695--32206806 Score: 91
Period size: 30 Copynumber: 3.3 Consensus size: 30
32206685 CAATAAATTT
32206695 TATGATTTTTATAATACTTTTTATAAATAA
1 TATGATTTTTATAATACTTTTTATAAATAA
*
32206725 TATGATTTTTTACTACA-ACTTTATAAAGGGTACAATAAA
1 TATGA-TTTTTA-TA-ATACTTT-T-TA---TA-AAT-AA
32206764 TTTTATGATTTTTATAATACTTTTTATAAATAA
1 ---TATGATTTTTATAATACTTTTTATAAATAA
32206797 TATGATTTTT
1 TATGATTTTT
32206807 TACTACAACT
Statistics
Matches: 66, Mismatches: 2, Indels: 28
0.69 0.02 0.29
Matches are distributed among these distances:
30 15 0.23
31 6 0.09
32 7 0.11
33 4 0.06
34 4 0.06
35 2 0.03
37 2 0.03
38 4 0.06
39 4 0.06
40 7 0.11
41 6 0.09
42 5 0.08
ACGTcount: A:0.38, C:0.05, G:0.06, T:0.51
Consensus pattern (30 bp):
TATGATTTTTATAATACTTTTTATAAATAA
Found at i:32206758 original size:72 final size:72
Alignment explanation
Indices: 32206672--32206824 Score: 288
Period size: 72 Copynumber: 2.1 Consensus size: 72
32206662 TATAAAAAAA
*
32206672 TTTATAAAGTGTACAATAAATTTTATGATTTTTATAATACTTTTTATAAATAATATGATTTTTTA
1 TTTATAAAGGGTACAATAAATTTTATGATTTTTATAATACTTTTTATAAATAATATGATTTTTTA
32206737 CTACAAC
66 CTACAAC
32206744 TTTATAAAGGGTACAATAAATTTTATGATTTTTATAATACTTTTTATAAATAATATGATTTTTTA
1 TTTATAAAGGGTACAATAAATTTTATGATTTTTATAATACTTTTTATAAATAATATGATTTTTTA
32206809 CTACAAC
66 CTACAAC
*
32206816 TTTAAAAAG
1 TTTATAAAG
32206825 TTATTTTTTT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
72 79 1.00
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (72 bp):
TTTATAAAGGGTACAATAAATTTTATGATTTTTATAATACTTTTTATAAATAATATGATTTTTTA
CTACAAC
Found at i:32207008 original size:21 final size:21
Alignment explanation
Indices: 32206971--32207019 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
32206961 ATAAATATAT
*
32206971 TATAA-TTTTTTTTATAA-AA
1 TATAACTTTTTTTCATAATAA
32206990 TATAACTTATTTTTCATAATAA
1 TATAACTT-TTTTTCATAATAA
32207012 -ATAACTTT
1 TATAACTTT
32207020 AGAATTTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 3 0.12
21 16 0.62
22 2 0.08
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (21 bp):
TATAACTTTTTTTCATAATAA
Found at i:32208183 original size:92 final size:92
Alignment explanation
Indices: 32208026--32208396 Score: 708
Period size: 92 Copynumber: 4.0 Consensus size: 92
32208016 AAATGTTTTG
32208026 TATGTGGGTTACATCTTTATTAGTCTGGTTTTTGTTCGATTTTTCATCTGTGAATTGTATTGGTT
1 TATGTGGGTTACATCTTTATTAGTCTGGTTTTTGTTCGATTTTTCATCTGTGAATTGTATTGGTT
32208091 GAATTTTACATTGTAATTGGTTAGACA
66 GAATTTTACATTGTAATTGGTTAGACA
32208118 TATGTGGGTTACATCTTTATTAGTCTGGTTTTTGTTCGATTTTTCATCTGTGAATTGTATTGGTT
1 TATGTGGGTTACATCTTTATTAGTCTGGTTTTTGTTCGATTTTTCATCTGTGAATTGTATTGGTT
32208183 GAATTTTACATTGTAATTGGTTAGACA
66 GAATTTTACATTGTAATTGGTTAGACA
32208210 TATGTGGGTTACATCTTTATTAGTCTGGTTTTTGTTCGATTTTTCATCTGTGAATTGTATTGGTT
1 TATGTGGGTTACATCTTTATTAGTCTGGTTTTTGTTCGATTTTTCATCTGTGAATTGTATTGGTT
32208275 GAATTTTACATTGTAATTGGTTAGACA
66 GAATTTTACATTGTAATTGGTTAGACA
*
32208302 TATGTGGGTTACATCTTTATTAGTCTGGTTTTTGTTCGATTTTTCAT-TCGTAAATTGTATTGGT
1 TATGTGGGTTACATCTTTATTAGTCTGGTTTTTGTTCGATTTTTCATCT-GTGAATTGTATTGGT
*
32208366 TTAATTTTACATTGTAATTGGTTAGACA
65 TGAATTTTACATTGTAATTGGTTAGACA
32208394 TAT
1 TAT
32208397 AATTGTATTT
Statistics
Matches: 276, Mismatches: 2, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
91 1 0.00
92 275 1.00
ACGTcount: A:0.21, C:0.09, G:0.20, T:0.50
Consensus pattern (92 bp):
TATGTGGGTTACATCTTTATTAGTCTGGTTTTTGTTCGATTTTTCATCTGTGAATTGTATTGGTT
GAATTTTACATTGTAATTGGTTAGACA
Found at i:32210128 original size:44 final size:42
Alignment explanation
Indices: 32210065--32210177 Score: 142
Period size: 44 Copynumber: 2.6 Consensus size: 42
32210055 TGTGATATCG
32210065 TGTAAGACCACGTCTGGGACGTTGGCATCG-ATTTGAGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTT--GA-TTACA
32210109 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGTTATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCG-TATTTGATTACA
*
32210152 TGTAAGACCACGTCTAGGACGTTGGC
1 TGTAAGACCACGTCTGGGACGTTGGC
32210178 GTTGTACGAG
Statistics
Matches: 62, Mismatches: 1, Indels: 13
0.82 0.01 0.17
Matches are distributed among these distances:
42 1 0.02
43 27 0.44
44 29 0.47
45 1 0.02
46 4 0.06
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.29
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTACA
Found at i:32213212 original size:13 final size:13
Alignment explanation
Indices: 32213194--32213219 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32213184 ATAACTTCCT
32213194 TACATAGCGTAGG
1 TACATAGCGTAGG
32213207 TACATAGCGTAGG
1 TACATAGCGTAGG
32213220 CAAACTCAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (13 bp):
TACATAGCGTAGG
Found at i:32213522 original size:23 final size:23
Alignment explanation
Indices: 32213493--32213602 Score: 94
Period size: 23 Copynumber: 4.8 Consensus size: 23
32213483 GATCTCGCCT
* *
32213493 CAAAGGCATTACAGAATGTGTCA
1 CAAAGGCATTACAGAATATGCCA
* *
32213516 CATAGGCATCACAGAATATGCCA
1 CAAAGGCATTACAGAATATGCCA
* * * *
32213539 CAAAGGCTTTACAGAACACGTCA
1 CAAAGGCATTACAGAATATGCCA
* * *
32213562 CAAAAGCTTTACAGAATATTCCA
1 CAAAGGCATTACAGAATATGCCA
* * *
32213585 CACAGGCTTTACTGAATA
1 CAAAGGCATTACAGAATA
32213603 CGTCTATGTT
Statistics
Matches: 69, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 69 1.00
ACGTcount: A:0.39, C:0.23, G:0.16, T:0.22
Consensus pattern (23 bp):
CAAAGGCATTACAGAATATGCCA
Found at i:32213562 original size:46 final size:46
Alignment explanation
Indices: 32213493--32213606 Score: 129
Period size: 46 Copynumber: 2.5 Consensus size: 46
32213483 GATCTCGCCT
* ** * *
32213493 CAAAGGCATTACAGAATGTGTCACATAGGCATCACAGAATATGCCA
1 CAAAGGCTTTACAGAATACGTCACAAAAGCATCACAGAATATGCCA
* * * *
32213539 CAAAGGCTTTACAGAACACGTCACAAAAGCTTTACAGAATATTCCA
1 CAAAGGCTTTACAGAATACGTCACAAAAGCATCACAGAATATGCCA
* *
32213585 CACAGGCTTTACTGAATACGTC
1 CAAAGGCTTTACAGAATACGTC
32213607 TATGTTTACT
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 56 1.00
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.22
Consensus pattern (46 bp):
CAAAGGCTTTACAGAATACGTCACAAAAGCATCACAGAATATGCCA
Found at i:32220734 original size:47 final size:47
Alignment explanation
Indices: 32220681--32221211 Score: 846
Period size: 47 Copynumber: 11.2 Consensus size: 47
32220671 AATTCTAAAT
32220681 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
32220728 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
32220775 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
32220823 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
32220870 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
32220917 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
32220964 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
32221011 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA-A---AGTGTATATA
*
32221062 TATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
32221109 TATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*** * * * * * * *
32221156 TGTGACGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
32221203 TGTGATAAG
1 TGTGATAAG
32221212 TCCCGAAGGG
Statistics
Matches: 458, Mismatches: 21, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
47 368 0.80
48 44 0.10
50 1 0.00
51 45 0.10
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.30
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:32221386 original size:77 final size:78
Alignment explanation
Indices: 32221289--32221445 Score: 280
Period size: 77 Copynumber: 2.0 Consensus size: 78
32221279 ATCACTGATT
* *
32221289 TATGTCCGTAAGCTTTGTGCTCGTACTATATCCGAGCTCTAAAGACCCGATGACTACGTGTGGGG
1 TATGTCCGTAAGCTTCGTGCTCGTACTATATCCGAGCTCTAAAGACCCGATGACTACGTGTGGGA
32221354 A-TTTTGTCCGGG
66 ATTTTTGTCCGGG
*
32221366 TATGTCCGTAAGCTTCGTGCTCGTACTATATCTGAGCTCTAAAGACCCGATGACTACGTGTGGGA
1 TATGTCCGTAAGCTTCGTGCTCGTACTATATCCGAGCTCTAAAGACCCGATGACTACGTGTGGGA
32221431 ATTTTTGTCCGGG
66 ATTTTTGTCCGGG
32221444 TA
1 TA
32221446 AGACCCGATA
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
77 63 0.83
78 13 0.17
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (78 bp):
TATGTCCGTAAGCTTCGTGCTCGTACTATATCCGAGCTCTAAAGACCCGATGACTACGTGTGGGA
ATTTTTGTCCGGG
Found at i:32222795 original size:85 final size:85
Alignment explanation
Indices: 32222652--32222807 Score: 303
Period size: 85 Copynumber: 1.8 Consensus size: 85
32222642 AGGTGGGGAC
32222652 ATGAGTCTAGTTTCAGGGAAAAATCACAAAACTGATTTTTGAGTTGTGAAACTCAAGATATGATT
1 ATGAGTCTAGTTTCAGGGAAAAATCACAAAACTGATTTTTGAGTTGTGAAACTCAAGATATGATT
32222717 TTTAAAACGTAGATGGGCAT
66 TTTAAAACGTAGATGGGCAT
*
32222737 ATGAGTCTAGTTTCAGGGAAAAATCACGAAACTGATTTTTGAGTTGTGAAACTCAAGATATGATT
1 ATGAGTCTAGTTTCAGGGAAAAATCACAAAACTGATTTTTGAGTTGTGAAACTCAAGATATGATT
32222802 TTTAAA
66 TTTAAA
32222808 GCGACTAGTA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 70 1.00
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.33
Consensus pattern (85 bp):
ATGAGTCTAGTTTCAGGGAAAAATCACAAAACTGATTTTTGAGTTGTGAAACTCAAGATATGATT
TTTAAAACGTAGATGGGCAT
Found at i:32223599 original size:20 final size:19
Alignment explanation
Indices: 32223574--32223619 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 19
32223564 GTATTGATCC
32223574 GGTATC-TATACTTTTCTCAA
1 GGTATCATATA-TTTTCT-AA
32223594 GGTATCGATATATTTTCTAA
1 GGTATC-ATATATTTTCTAA
32223614 GGTATC
1 GGTATC
32223620 GATGTTCCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 14 0.58
21 6 0.25
22 4 0.17
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.43
Consensus pattern (19 bp):
GGTATCATATATTTTCTAA
Found at i:32223620 original size:20 final size:22
Alignment explanation
Indices: 32223580--32223622 Score: 72
Period size: 20 Copynumber: 2.0 Consensus size: 22
32223570 ATCCGGTATC
32223580 TATACTTTTCTCAAGGTATCGA
1 TATACTTTTCTCAAGGTATCGA
32223602 TATA-TTTTCT-AAGGTATCGA
1 TATACTTTTCTCAAGGTATCGA
32223622 T
1 T
32223623 GTTCCTGCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 11 0.52
21 6 0.29
22 4 0.19
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (22 bp):
TATACTTTTCTCAAGGTATCGA
Found at i:32226892 original size:113 final size:111
Alignment explanation
Indices: 32226646--32226872 Score: 373
Period size: 113 Copynumber: 2.0 Consensus size: 111
32226636 AGATGAACAA
*
32226646 ATTAAAACAATGATGAAAATACGTATGTTGTATATAGTTCAATGGAAGCTTTATGGGCAAGTTAT
1 ATTAAAACAATGAT-AAAATACGTATGTTGTATATAGTTCAATGGAAGCTTTATAGGCAAGTTAT
*
32226711 ATATAGTCAGTGACATGAACTTTACTATGAACTTGTAGAGGCTCATG
65 ATATAGTCAGTGACATGAACTTTACTATGAACTTATAGAGGCTCATG
*
32226758 CATTAAAACAATGATGAAAATACGTATTTTGTATATAGTTCAATGGAAGCTTTATAGGCAAGTTA
1 -ATTAAAACAATGAT-AAAATACGTATGTTGTATATAGTTCAATGGAAGCTTTATAGGCAAGTTA
*
32226823 TATATAGTCGCAGTGACGTGAACTTTACTATGAACTTATAGAGGCTCATG
64 TATATAGT--CAGTGACATGAACTTTACTATGAACTTATAGAGGCTCATG
32226873 TTGTTAACGT
Statistics
Matches: 108, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
113 70 0.65
115 38 0.35
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (111 bp):
ATTAAAACAATGATAAAATACGTATGTTGTATATAGTTCAATGGAAGCTTTATAGGCAAGTTATA
TATAGTCAGTGACATGAACTTTACTATGAACTTATAGAGGCTCATG
Found at i:32227736 original size:16 final size:17
Alignment explanation
Indices: 32227715--32227749 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
32227705 AATTTTAAAT
32227715 TTTAAAATTTT-ATTTA
1 TTTAAAATTTTAATTTA
*
32227731 TTTAAAGTTTTAATTTA
1 TTTAAAATTTTAATTTA
32227748 TT
1 TT
32227750 AACTTCCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (17 bp):
TTTAAAATTTTAATTTA
Found at i:32227743 original size:8 final size:7
Alignment explanation
Indices: 32227684--32227726 Score: 59
Period size: 7 Copynumber: 6.0 Consensus size: 7
32227674 TTATCAAAAG
32227684 AATTTTA
1 AATTTTA
*
32227691 AACTTTA
1 AATTTTA
*
32227698 AACTTTA
1 AATTTTA
32227705 AATTTTA
1 AATTTTA
32227712 AATTTTAA
1 AATTTT-A
32227720 AATTTTA
1 AATTTTA
32227727 TTTATTTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
7 26 0.79
8 7 0.21
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (7 bp):
AATTTTA
Found at i:32227751 original size:16 final size:15
Alignment explanation
Indices: 32227702--32227751 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
32227692 ACTTTAAACT
32227702 TTAAATTTTAAATTT-
1 TTAAATTTT-AATTTA
*
32227717 TAAAATTTT-ATTTA
1 TTAAATTTTAATTTA
32227731 TTTAAAGTTTTAATTTA
1 -TTAAA-TTTTAATTTA
32227748 TTAA
1 TTAA
32227752 CTTCCATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
13 4 0.14
15 12 0.41
16 8 0.28
17 5 0.17
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (15 bp):
TTAAATTTTAATTTA
Found at i:32228069 original size:16 final size:17
Alignment explanation
Indices: 32228041--32228072 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32228031 TGTATAAATT
32228041 ATTTAAAATTAAAATCC
1 ATTTAAAATTAAAATCC
32228058 ATTTAAAA-TAAAATC
1 ATTTAAAATTAAAATC
32228073 TTAATAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.34
Consensus pattern (17 bp):
ATTTAAAATTAAAATCC
Found at i:32228141 original size:7 final size:7
Alignment explanation
Indices: 32228121--32228157 Score: 56
Period size: 7 Copynumber: 5.0 Consensus size: 7
32228111 TCAATATATT
32228121 TTTAAAA
1 TTTAAAA
32228128 TTTTAAAA
1 -TTTAAAA
32228136 TTTAAAA
1 TTTAAAA
32228143 TTTAAAA
1 TTTAAAA
32228150 TTATAAAA
1 TT-TAAAA
32228158 ATGGAACATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 16 0.57
8 12 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
TTTAAAA
Found at i:32228141 original size:15 final size:14
Alignment explanation
Indices: 32228121--32228157 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 14
32228111 TCAATATATT
32228121 TTTAAAATTTTAAAA
1 TTTAAAA-TTTAAAA
32228136 TTTAAAATTTAAAA
1 TTTAAAATTTAAAA
32228150 TTATAAAA
1 TT-TAAAA
32228158 ATGGAACATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
TTTAAAATTTAAAA
Found at i:32229054 original size:16 final size:17
Alignment explanation
Indices: 32229033--32229064 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
32229023 CTAAACTAAT
32229033 TTTTTATAT-ATTTTTA
1 TTTTTATATAATTTTTA
32229049 TTTTTATATAATTTTT
1 TTTTTATATAATTTTT
32229065 TATATAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTTATATAATTTTTA
Found at i:32229083 original size:14 final size:12
Alignment explanation
Indices: 32229049--32229075 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
32229039 TATATTTTTA
32229049 TTTTTATATAAT
1 TTTTTATATAAT
32229061 TTTTTATATAAT
1 TTTTTATATAAT
32229073 TTT
1 TTT
32229076 CTTAATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTTTATATAAT
Found at i:32229091 original size:28 final size:28
Alignment explanation
Indices: 32229029--32229092 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
32229019 AAACCTAAAC
* **
32229029 TAATTTTTTATATATTTTTATTTTTATA
1 TAATTTTTTATATAATTTTATTAATATA
*
32229057 TAATTTTTTATATAATTTTCTTAATAT-
1 TAATTTTTTATATAATTTTATTAATATA
*
32229084 TTATTTTTT
1 TAATTTTTT
32229093 CAGTTATACT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
27 8 0.26
28 23 0.74
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (28 bp):
TAATTTTTTATATAATTTTATTAATATA
Found at i:32229143 original size:14 final size:14
Alignment explanation
Indices: 32229126--32229154 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32229116 TCTAATATTA
32229126 TAAATATAATTTTT
1 TAAATATAATTTTT
32229140 TAAATATAATTTTT
1 TAAATATAATTTTT
32229154 T
1 T
32229155 TAGTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TAAATATAATTTTT
Found at i:32229184 original size:20 final size:18
Alignment explanation
Indices: 32229140--32229184 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
32229130 TATAATTTTT
*
32229140 TAAATATAATTTTTTTAG
1 TAAATATAATTTTTATAG
32229158 TAAATATAATTTTTATATG
1 TAAATATAATTTTTATA-G
32229177 TGAAATAT
1 T-AAATAT
32229185 TTATTCTATC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 16 0.67
19 2 0.08
20 6 0.25
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (18 bp):
TAAATATAATTTTTATAG
Found at i:32232778 original size:73 final size:73
Alignment explanation
Indices: 32232662--32232800 Score: 176
Period size: 73 Copynumber: 1.9 Consensus size: 73
32232652 TGCTCTTCGT
* * *
32232662 GAGCTTCCTGATTAAAGGCTCTTTGTGAGCTTCCCGATATGGCTCGCTTGAACTTCCTGATATAT
1 GAGCTTCCTCATTAAAGGCTCTTCGTGAGCTTCCCGATATGGCTCGCATGAACTTCCTGAT-TAT
32232727 GGTTATCCA
65 GGTTATCCA
* * *
32232736 GAGCTT-CTCATTAATGGCTCTTCG-GAG-TTACCCGTTATTGGCTCGCATGAGCTTCCTGATTA
1 GAGCTTCCTCATTAAAGGCTCTTCGTGAGCTT-CCCGATA-TGGCTCGCATGAACTTCCTGATTA
32232798 TGG
64 TGG
32232801 CTCTTATGAG
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
71 2 0.04
72 14 0.25
73 35 0.61
74 6 0.11
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (73 bp):
GAGCTTCCTCATTAAAGGCTCTTCGTGAGCTTCCCGATATGGCTCGCATGAACTTCCTGATTATG
GTTATCCA
Found at i:32236523 original size:37 final size:37
Alignment explanation
Indices: 32236473--32236551 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32236463 TTATTACGAA
* * *
32236473 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
32236510 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
32236547 GTCTT
1 GTCTT
32236552 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:32236748 original size:47 final size:47
Alignment explanation
Indices: 32236670--32237080 Score: 750
Period size: 47 Copynumber: 8.7 Consensus size: 47
32236660 CCCTTCGGGA
* * * * * *
32236670 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32236717 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32236764 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32236811 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32236858 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32236905 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32236952 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32236999 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32237046 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
32237081 AGAATCCTAA
Statistics
Matches: 354, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 354 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32248881 original size:15 final size:15
Alignment explanation
Indices: 32248861--32248889 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32248851 TTTATAATTA
32248861 ATTTAATTAATATTT
1 ATTTAATTAATATTT
32248876 ATTTAATTAATATT
1 ATTTAATTAATATT
32248890 AATCACCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTTAATTAATATTT
Found at i:32250051 original size:41 final size:40
Alignment explanation
Indices: 32249952--32250096 Score: 121
Period size: 40 Copynumber: 3.6 Consensus size: 40
32249942 ATTATTGTAT
* * * *
32249952 TGAATGCACAAACGTGCCCCTGTTTGTACTTCGGTACCTC
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGATACCCC
* ** * *
32249992 TAAATGCACATAATTGCCCTTGATTGTACTTTGATACCCCC
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGATA-CCCC
* **
32250033 TGAATGCACATGCGTGCCCCTTTTTGTACTTC-AGTACCCC
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGA-TACCCC
* * * *
32250073 AGAATGCATATACATGCTCCTGAT
1 TGAATGCACATACGTGCCCCTGAT
32250097 CTTATTATGG
Statistics
Matches: 79, Mismatches: 24, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
40 50 0.63
41 29 0.37
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTGATTGTACTTCGATACCCC
Found at i:32252829 original size:19 final size:18
Alignment explanation
Indices: 32252805--32252841 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
32252795 GCGAAGAAAT
32252805 TAAATAATTAAATTCAAAA
1 TAAATAATTAAATT-AAAA
32252824 TAAATAATTAAATTAAAA
1 TAAATAATTAAATTAAAA
32252842 GATCATCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (18 bp):
TAAATAATTAAATTAAAA
Found at i:32254463 original size:25 final size:27
Alignment explanation
Indices: 32254425--32254474 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
32254415 GTTAAATAAA
*
32254425 TAAAAAAAACAAACT-AGTCCATTTGT
1 TAAAAAAAACAAACTGAATCCATTTGT
*
32254451 TAAAAATAA-AAACTGAATCCATTT
1 TAAAAAAAACAAACTGAATCCATTT
32254475 TTACGGTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.28
Consensus pattern (27 bp):
TAAAAAAAACAAACTGAATCCATTTGT
Found at i:32257694 original size:22 final size:22
Alignment explanation
Indices: 32257669--32257711 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
32257659 AATTAGTTAA
32257669 TAAC-AAATAATTTTTATTAAAT
1 TAACTAAA-AATTTTTATTAAAT
* *
32257691 TAACTTAAAATTTTTTTTAAA
1 TAACTAAAAATTTTTATTAAA
32257712 AAAAGTCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.49
Consensus pattern (22 bp):
TAACTAAAAATTTTTATTAAAT
Found at i:32262120 original size:98 final size:98
Alignment explanation
Indices: 32261995--32262191 Score: 304
Period size: 98 Copynumber: 2.0 Consensus size: 98
32261985 TTTAAAATAA
** * * * *
32261995 TAAAGGAAATATTCTGAGTTTGCGATTTTAGAGGAATCGTGCCCTAACGTATTGAGTGTGATTTT
1 TAAAGGAAATATTCCAAGTTTGCGATTTTAGAGGAATCGTCCCCTAACGCATTGAGCGTGATTTC
32262060 TTAAATCTTGGATAAATGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAATGGATGTTCTTTTAAAG
* * *
32262093 TAAAGGAAATATTCCAAGTTTGGGATTTTAGAGGAATCGTCCCCTAATGCATTGGGCGTGATTTC
1 TAAAGGAAATATTCCAAGTTTGCGATTTTAGAGGAATCGTCCCCTAACGCATTGAGCGTGATTTC
*
32262158 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAATGGATGTTCTTTTAAAG
32262191 T
1 T
32262192 TTTATTGCAC
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
98 89 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.38
Consensus pattern (98 bp):
TAAAGGAAATATTCCAAGTTTGCGATTTTAGAGGAATCGTCCCCTAACGCATTGAGCGTGATTTC
TTAAATCTTGGATAAATGGATGTTCTTTTAAAG
Found at i:32263222 original size:11 final size:12
Alignment explanation
Indices: 32263204--32263234 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
32263194 TTAATATAAG
32263204 ATTATTTAAATA
1 ATTATTTAAATA
32263216 ATT-TTTAAATA
1 ATTATTTAAATA
32263227 ATTATTTA
1 ATTATTTA
32263235 GGTTATAGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
ATTATTTAAATA
Found at i:32266515 original size:23 final size:23
Alignment explanation
Indices: 32266485--32266531 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
32266475 CTTCGTTTCG
32266485 GTACTTAGTTTAAAAATGATTAT
1 GTACTTAGTTTAAAAATGATTAT
32266508 GTACTTAGTTTAAAAATGATTAT
1 GTACTTAGTTTAAAAATGATTAT
32266531 G
1 G
32266532 ACGTGTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.15, T:0.43
Consensus pattern (23 bp):
GTACTTAGTTTAAAAATGATTAT
Found at i:32267124 original size:29 final size:31
Alignment explanation
Indices: 32267064--32267126 Score: 94
Period size: 29 Copynumber: 2.1 Consensus size: 31
32267054 TCACATTTGG
* *
32267064 TACTTGTACTTTTATAAAATGTCTAATGTGA
1 TACTTGTACTTTTATAAAATATCTAATATGA
32267095 TACTTGTAC-TTTA-AAAATATCTAATATGA
1 TACTTGTACTTTTATAAAATATCTAATATGA
32267124 TAC
1 TAC
32267127 CTGAGCTATC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 17 0.57
30 4 0.13
31 9 0.30
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.43
Consensus pattern (31 bp):
TACTTGTACTTTTATAAAATATCTAATATGA
Found at i:32267415 original size:20 final size:20
Alignment explanation
Indices: 32267355--32267415 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
32267345 GCATTACGTG
*
32267355 AAAAACTAAATAAAAGTTCAAT
1 AAAAAATAAATAAAA-TT-AAT
* * * *
32267377 TAAAAATATATATAGTTAAT
1 AAAAAATAAATAAAATTAAT
32267397 AAAAAATAAATAAAATTAA
1 AAAAAATAAATAAAATTAA
32267416 GCTTACATGA
Statistics
Matches: 30, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
20 18 0.60
21 2 0.07
22 10 0.33
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (20 bp):
AAAAAATAAATAAAATTAAT
Found at i:32274709 original size:25 final size:25
Alignment explanation
Indices: 32274681--32274729 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
32274671 ACCAATACTC
* *
32274681 AGCTCATATAAGCTTACCGTTATTT
1 AGCTCAGAGAAGCTTACCGTTATTT
* *
32274706 AGCTCGGAGGAGCTTACCGTTATT
1 AGCTCAGAGAAGCTTACCGTTATT
32274730 CAGATTGGAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (25 bp):
AGCTCAGAGAAGCTTACCGTTATTT
Found at i:32274739 original size:25 final size:25
Alignment explanation
Indices: 32274691--32274751 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
32274681 AGCTCATATA
* *
32274691 AGCTTACCGTTATTTAGCTCGGAGG
1 AGCTTACCGTTATTCAGATCGGAGG
*
32274716 AGCTTACCGTTATTCAGATTGGAGG
1 AGCTTACCGTTATTCAGATCGGAGG
*
32274741 AGCTTATCGTT
1 AGCTTACCGTT
32274752 TATAGCTCGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.34
Consensus pattern (25 bp):
AGCTTACCGTTATTCAGATCGGAGG
Found at i:32280823 original size:51 final size:51
Alignment explanation
Indices: 32280756--32280953 Score: 197
Period size: 51 Copynumber: 3.9 Consensus size: 51
32280746 TTAATGATAT
* * * *
32280756 CGATTCACATAGTAGCCTGCACATAGTACTACACATGTGCCCATCACTATC
1 CGATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCACAATC
* * * *
32280807 CAATACACGTAGTAGCCTGCACATAGTACTAAACATGTGATCGA--AGCAATT
1 CGATACACGTAGTAGCCTGCACATAGTACTACACATGTGA-CCATCA-CAATC
* * * * *
32280858 CGATACGCATAGTAGCCTGCACATAGTACTACATATGCGACC-T-ACCATTC
1 CGATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCA-CAATC
* * *
32280908 TGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCA
1 CGATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCA
32280954 TTTTCACTTT
Statistics
Matches: 117, Mismatches: 25, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
50 41 0.35
51 73 0.62
52 3 0.03
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.24
Consensus pattern (51 bp):
CGATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCACAATC
Found at i:32280826 original size:245 final size:245
Alignment explanation
Indices: 32280396--32280875 Score: 924
Period size: 245 Copynumber: 2.0 Consensus size: 245
32280386 TTTCCCGAAG
*
32280396 AACACTTCGGAATAATAACAGATACACGATGGATTCTGCACACAGCAACCACCCTTTGTAATCAA
1 AACACTTCGGAATAATAACAGATACACGATGGATTCCGCACACAGCAACCACCCTTTGTAATCAA
32280461 TGATATCCGGTGGGATCAGCACATAGCAACCACCTTATAATTAATGATATCGATTCACATAGTAG
66 TGATATCCGGTGGGATCAGCACATAGCAACCACCTTATAATTAATGATATCGATTCACATAGTAG
32280526 CCTGCACATAGTACCACACATGTGCCCATCACTATCCAATACACGTAGTAGCCTGCACATAGTAC
131 CCTGCACATAGTACCACACATGTGCCCATCACTATCCAATACACGTAGTAGCCTGCACATAGTAC
32280591 TAAACACGTGATCGAAGCAATTCGATACGCATAGTAGCCTTTGTAATAAT
196 TAAACACGTGATCGAAGCAATTCGATACGCATAGTAGCCTTTGTAATAAT
*
32280641 AACACTTCGGAATAATAACAGATACACGGTGGATTCCGCACACAGCAACCACCCTTTGTAATCAA
1 AACACTTCGGAATAATAACAGATACACGATGGATTCCGCACACAGCAACCACCCTTTGTAATCAA
32280706 TGATATCCGGTGGGATCAGCACATAGCAACCACCTTATAATTAATGATATCGATTCACATAGTAG
66 TGATATCCGGTGGGATCAGCACATAGCAACCACCTTATAATTAATGATATCGATTCACATAGTAG
*
32280771 CCTGCACATAGTACTACACATGTGCCCATCACTATCCAATACACGTAGTAGCCTGCACATAGTAC
131 CCTGCACATAGTACCACACATGTGCCCATCACTATCCAATACACGTAGTAGCCTGCACATAGTAC
*
32280836 TAAACATGTGATCGAAGCAATTCGATACGCATAGTAGCCT
196 TAAACACGTGATCGAAGCAATTCGATACGCATAGTAGCCT
32280876 GCACATAGTA
Statistics
Matches: 231, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
245 231 1.00
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.24
Consensus pattern (245 bp):
AACACTTCGGAATAATAACAGATACACGATGGATTCCGCACACAGCAACCACCCTTTGTAATCAA
TGATATCCGGTGGGATCAGCACATAGCAACCACCTTATAATTAATGATATCGATTCACATAGTAG
CCTGCACATAGTACCACACATGTGCCCATCACTATCCAATACACGTAGTAGCCTGCACATAGTAC
TAAACACGTGATCGAAGCAATTCGATACGCATAGTAGCCTTTGTAATAAT
Found at i:32280971 original size:101 final size:102
Alignment explanation
Indices: 32280755--32280947 Score: 264
Period size: 101 Copynumber: 1.9 Consensus size: 102
32280745 ATTAATGATA
* *
32280755 TCGATTCACATAGTAGCCTGCACATAGTACTACACATGTGCCCATCACTATCCAATACACGTAGT
1 TCGATTCACATAGTAGCCTGCACATAGTACTACACATGCGCCCACCACTATCCAATACACGTAGT
*
32280820 AGCCTGCACATAGTACTAAACATGTGATCGAAGCAAT
66 AGCCTGCACATAGTACTAAACACGTGATCGAAGCAAT
* * * * ***
32280857 TCGATACGCATAGTAGCCTGCACATAGTACTACATATGCGACCTACCA-T-TCTGGTACACGTAG
1 TCGATTCACATAGTAGCCTGCACATAGTACTACACATGCG-CCCACCACTATCCAATACACGTAG
*
32280920 TAGCCTGCACATAGTACTACACACGTGA
65 TAGCCTGCACATAGTACTAAACACGTGA
32280948 CCATCATTTT
Statistics
Matches: 79, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
101 37 0.47
102 37 0.47
103 5 0.06
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (102 bp):
TCGATTCACATAGTAGCCTGCACATAGTACTACACATGCGCCCACCACTATCCAATACACGTAGT
AGCCTGCACATAGTACTAAACACGTGATCGAAGCAAT
Found at i:32285039 original size:25 final size:25
Alignment explanation
Indices: 32284981--32285068 Score: 81
Period size: 25 Copynumber: 3.6 Consensus size: 25
32284971 TTAGGGTTAT
32284981 CGAT-TTCAGCTCT-TATGAGCTTAC
1 CGATATTCAGCT-TGTATGAGCTTAC
* *
32285005 TGATACTCAGCTTGTATGAGCTTAC
1 CGATATTCAGCTTGTATGAGCTTAC
* * * *
32285030 CGCTATTCAGCTCGGAGGAGCTTAC
1 CGATATTCAGCTTGTATGAGCTTAC
* *
32285055 CGTTATTCAACTTG
1 CGATATTCAGCTTG
32285069 GAGCAGCATA
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
24 4 0.08
25 47 0.92
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (25 bp):
CGATATTCAGCTTGTATGAGCTTAC
Found at i:32294403 original size:19 final size:19
Alignment explanation
Indices: 32294379--32294416 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
32294369 TATGTAAATA
*
32294379 AAGACAAAATTTAGTAATT
1 AAGACAAAATTAAGTAATT
*
32294398 AAGACATAATTAAGTAATT
1 AAGACAAAATTAAGTAATT
32294417 TTAAAGGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.32
Consensus pattern (19 bp):
AAGACAAAATTAAGTAATT
Found at i:32295211 original size:31 final size:31
Alignment explanation
Indices: 32295176--32295474 Score: 388
Period size: 31 Copynumber: 9.7 Consensus size: 31
32295166 GTATATGTTT
** * * *
32295176 TATACATTGTTGAATTTGACTTGTTTATAGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
*
32295207 TATACATTGCCGAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATGGA
*
32295238 TATACATTGCCGAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATGGA
*
32295269 TATACATTGCCGAATTTGATTTGTGTATGGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* *
32295300 TATATATTGCCGAA-TTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* *
32295330 TATACATTGCCGAAGTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATGGA
32295361 TATACATTGCCGAATTTGATTTGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* * *
32295392 TATTCATTGCCGAA-TTGATTTTTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
** *
32295422 TATACATTGCTAAATTTGATTCGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* * *
32295453 TACATATTGCTGAA-TTGATTTG
1 TATACATTGCCGAATTTGATTTG
32295475 AGCATTGGAT
Statistics
Matches: 237, Mismatches: 29, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
30 59 0.25
31 178 0.75
ACGTcount: A:0.28, C:0.09, G:0.18, T:0.44
Consensus pattern (31 bp):
TATACATTGCCGAATTTGATTTGTATATGGA
Found at i:32295342 original size:123 final size:122
Alignment explanation
Indices: 32295188--32295474 Score: 405
Period size: 123 Copynumber: 2.3 Consensus size: 122
32295178 TACATTGTTG
* *
32295188 AATTTGACTTGTTTATAGATATACATTGCCGAATTTGATTTGTATATGGTTATACATTGCCGAAT
1 AATTTGATTTGTATATAGATATACATTGCCGAA-TTGATTTGTATATGGTTATACATTGCCGAAT
* * * * *
32295253 TTGATTTGTATATGGTTATACATTGCCGAATTTGATTTGTGTATGGATATATATTGCCG
65 TTGATTTGTATATGGATATACATTGCCGAA-TTGATTTGTATATAGATATACATTGCCA
32295312 AA-TTGATTTGTATATAGATATACATTGCCGAAGTTGATTTGTATATGGTTATACATTGCCGAAT
1 AATTTGATTTGTATATAGATATACATTGCCGAA-TTGATTTGTATATGGTTATACATTGCCGAAT
* * *
32295376 TTGATTTGTATATGGATATTCATTGCCGAATTGATTTTTATATAGATATACATTGCTA
65 TTGATTTGTATATGGATATACATTGCCGAATTGATTTGTATATAGATATACATTGCCA
* * * * *
32295434 AATTTGATTCGTATATGGATACATATTGCTGAATTGATTTG
1 AATTTGATTTGTATATAGATATACATTGCCGAATTGATTTG
32295475 AGCATTGGAT
Statistics
Matches: 146, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
122 32 0.22
123 112 0.77
124 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.44
Consensus pattern (122 bp):
AATTTGATTTGTATATAGATATACATTGCCGAATTGATTTGTATATGGTTATACATTGCCGAATT
TGATTTGTATATGGATATACATTGCCGAATTGATTTGTATATAGATATACATTGCCA
Found at i:32295352 original size:92 final size:92
Alignment explanation
Indices: 32295165--32295474 Score: 408
Period size: 92 Copynumber: 3.4 Consensus size: 92
32295155 TGAATTTAAA
* ** * * * *
32295165 TGTATATGTTTTATACATTGTTGAATTTGACTTGTTTATAGATATACATTGCCGAATTTGATTTG
1 TGTATATG-GTTATACATTGCCGAATTTGATTTGTATATGGATATATATTGCCGAA-TTGATTTG
* *
32295230 TATATGGTTATACATTGCCGAATTTGATT
64 TATATAGATATACATTGCCGAATTTGATT
*
32295259 TGTATATGGTTATACATTGCCGAATTTGATTTGTGTATGGATATATATTGCCGAATTGATTTGTA
1 TGTATATGGTTATACATTGCCGAATTTGATTTGTATATGGATATATATTGCCGAATTGATTTGTA
*
32295324 TATAGATATACATTGCCGAAGTTGATT
66 TATAGATATACATTGCCGAATTTGATT
*
32295351 TGTATATGGTTATACATTGCCGAATTTGATTTGTATATGGATAT-TCATTGCCGAATTGATTTTT
1 TGTATATGGTTATACATTGCCGAATTTGATTTGTATATGGATATAT-ATTGCCGAATTGATTTGT
**
32295415 ATATAGATATACATTGCTAAATTTGATT
65 ATATAGATATACATTGCCGAATTTGATT
* * * * *
32295443 CGTATATGGATACATATTGCTGAA-TTGATTTG
1 TGTATATGGTTATACATTGCCGAATTTGATTTG
32295475 AGCATTGGAT
Statistics
Matches: 195, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
91 9 0.05
92 138 0.71
93 40 0.21
94 8 0.04
ACGTcount: A:0.28, C:0.09, G:0.18, T:0.45
Consensus pattern (92 bp):
TGTATATGGTTATACATTGCCGAATTTGATTTGTATATGGATATATATTGCCGAATTGATTTGTA
TATAGATATACATTGCCGAATTTGATT
Found at i:32302940 original size:47 final size:49
Alignment explanation
Indices: 32302865--32302964 Score: 132
Period size: 47 Copynumber: 2.1 Consensus size: 49
32302855 GGAGTAAAAT
* *
32302865 CAGATTTCTCGGTCGCCTGTACACAGTCCGTACCACCTTTGT-TAATAA
1 CAGATTTCTCGGTCGCCTGCACACAGTCCGTACCACCCTTGTATAATAA
* * * *
32302913 CAGA-TTCTCGGTGGCCTGCACATAGTCCGTGCCACCCTTGTATCATAA
1 CAGATTTCTCGGTCGCCTGCACACAGTCCGTACCACCCTTGTATAATAA
32302961 CAGA
1 CAGA
32302965 ATACCGGTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 32 0.71
48 13 0.29
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (49 bp):
CAGATTTCTCGGTCGCCTGCACACAGTCCGTACCACCCTTGTATAATAA
Found at i:32309908 original size:35 final size:35
Alignment explanation
Indices: 32309869--32310121 Score: 172
Period size: 35 Copynumber: 6.9 Consensus size: 35
32309859 CCTTAGATAT
32309869 GTCTATCCCAACCTTTTTAAAGTTGCTTTAGACAG
1 GTCTATCCCAACCTTTTTAAAGTTGCTTTAGACAG
* * *
32309904 GTCTATCCTAACTTTTTTTAAAGGTTGTTTTAGAC-G
1 GTCTATCCCAAC-CTTTTTAAA-GTTGCTTTAGACAG
*
32309940 TGTCTATCCCAA-CTTTTTAAGGTTGCTTTAGACAAG
1 -GTCTATCCCAACCTTTTTAAAGTTGCTTTAGAC-AG
* * *
32309976 GTCTATGTCTATCTTAACTTTTTTTAAATGTTGCTTTAGA-TG
1 GTCTA--TC---C-CAAC-CTTTTTAAA-GTTGCTTTAGACAG
* *
32310018 TGTCTATCCCAA-CTTTTTAAGGTTGCTTTAGATAAG
1 -GTCTATCCCAACCTTTTTAAAGTTGCTTTAGA-CAG
* * * * *
32310054 GTCTATCCCAACCTTTCTGAGGTTGTTTTAGACGG
1 GTCTATCCCAACCTTTTTAAAGTTGCTTTAGACAG
* * * *
32310089 GTTTATTCTAACATTTTTTAAAGGTTGCTTTAG
1 GTCTATCCCAAC-CTTTTTAAA-GTTGCTTTAG
32310122 GGTCTATTTC
Statistics
Matches: 170, Mismatches: 28, Indels: 38
0.72 0.12 0.16
Matches are distributed among these distances:
34 22 0.13
35 51 0.30
36 33 0.19
37 34 0.20
38 1 0.01
40 1 0.01
41 4 0.02
42 1 0.01
43 12 0.07
44 11 0.06
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.44
Consensus pattern (35 bp):
GTCTATCCCAACCTTTTTAAAGTTGCTTTAGACAG
Found at i:32309988 original size:41 final size:40
Alignment explanation
Indices: 32309940--32310059 Score: 117
Period size: 41 Copynumber: 3.0 Consensus size: 40
32309930 GTTTTAGACG
32309940 TGTCTATCCCAACTTTTTAAGGTTGCTTTAGACAAGGTCTA
1 TGTCTATCCCAACTTTTTAAGGTTGCTTTAGA-AAGGTCTA
** * *
32309981 TGTCTATCTTAACTTTTTTTAAATGTTGCTTTAG--A----TG
1 TGTCTATCCCAAC--TTTTT-AAGGTTGCTTTAGAAAGGTCTA
32310018 TGTCTATCCCAACTTTTTAAGGTTGCTTTAGATAAGGTCTA
1 TGTCTATCCCAACTTTTTAAGGTTGCTTTAGA-AAGGTCTA
32310059 T
1 T
32310060 CCCAACCTTT
Statistics
Matches: 61, Mismatches: 8, Indels: 20
0.69 0.09 0.22
Matches are distributed among these distances:
34 12 0.20
35 5 0.08
37 13 0.21
41 14 0.23
43 5 0.08
44 12 0.20
ACGTcount: A:0.23, C:0.16, G:0.16, T:0.45
Consensus pattern (40 bp):
TGTCTATCCCAACTTTTTAAGGTTGCTTTAGAAAGGTCTA
Found at i:32310014 original size:78 final size:78
Alignment explanation
Indices: 32309904--32310059 Score: 267
Period size: 78 Copynumber: 2.0 Consensus size: 78
32309894 CTTTAGACAG
*
32309904 GTCTATCCTAACTTTTTTTAAAGGTTGTTTTAGACGTGTCTATCCCAACTTTTTAAGGTTGCTTT
1 GTCTATCCTAACTTTTTTTAAAGGTTGCTTTAGACGTGTCTATCCCAACTTTTTAAGGTTGCTTT
32309969 AGACAAGGTCTAT
66 AGACAAGGTCTAT
* * *
32309982 GTCTATCTTAACTTTTTTTAAATGTTGCTTTAGATGTGTCTATCCCAACTTTTTAAGGTTGCTTT
1 GTCTATCCTAACTTTTTTTAAAGGTTGCTTTAGACGTGTCTATCCCAACTTTTTAAGGTTGCTTT
*
32310047 AGATAAGGTCTAT
66 AGACAAGGTCTAT
32310060 CCCAACCTTT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 73 1.00
ACGTcount: A:0.23, C:0.15, G:0.16, T:0.46
Consensus pattern (78 bp):
GTCTATCCTAACTTTTTTTAAAGGTTGCTTTAGACGTGTCTATCCCAACTTTTTAAGGTTGCTTT
AGACAAGGTCTAT
Found at i:32311205 original size:20 final size:20
Alignment explanation
Indices: 32311169--32311207 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
32311159 TTTTCCTTCG
*
32311169 TTCTTTAATTATTTTCTTTT
1 TTCTTTAATTATCTTCTTTT
32311189 TTCTTTAATT-TACTTCTTT
1 TTCTTTAATTAT-CTTCTTT
32311208 CGCTCCAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.15, C:0.13, G:0.00, T:0.72
Consensus pattern (20 bp):
TTCTTTAATTATCTTCTTTT
Found at i:32311834 original size:21 final size:21
Alignment explanation
Indices: 32311790--32311859 Score: 70
Period size: 21 Copynumber: 3.2 Consensus size: 21
32311780 TGTAACTCGG
*
32311790 TCACACGGGCGTGTG-CTCACT
1 TCACACGGGCGTGTGCCTC-TT
*
32311811 TCACATGGGCGTGTGCCTCTT
1 TCACACGGGCGTGTGCCTCTT
* *
32311832 TCATACAGGCGTGTGCCTCCTT
1 TCACACGGGCGTGTGCCT-CTT
32311854 TACACA
1 T-CACA
32311860 GCCTAAACCC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
21 30 0.75
22 7 0.17
23 3 0.08
ACGTcount: A:0.16, C:0.31, G:0.24, T:0.29
Consensus pattern (21 bp):
TCACACGGGCGTGTGCCTCTT
Found at i:32313335 original size:17 final size:18
Alignment explanation
Indices: 32313299--32313342 Score: 65
Period size: 16 Copynumber: 2.5 Consensus size: 18
32313289 AAGGGAATTC
32313299 ATTTATTTTTATATAAATA
1 ATTTA-TTTTATATAAATA
32313318 ATTTATTTTATA-AAATA
1 ATTTATTTTATATAAATA
32313335 A-TTATTTT
1 ATTTATTTT
32313343 CTTAAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.28
17 6 0.24
18 7 0.28
19 5 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTATTTTATATAAATA
Found at i:32324408 original size:359 final size:359
Alignment explanation
Indices: 32323745--32324462 Score: 1409
Period size: 359 Copynumber: 2.0 Consensus size: 359
32323735 CACCGCTCAT
32323745 AATCGGCTGCCACCATCCCACGTGCATAGTGGCTTAATCGTAAAAATTCAGCTTCATACTCAGCC
1 AATCGGCTGCCACCATCCCACGTGCATAGTGGCTTAATCGTAAAAATTCAGCTTCATACTCAGCC
32323810 ACTAATTTATCCCCCTGAGTCAGATTCAGAAACTCTTTCCTTCGGGCATCCACATAACTAGTTCC
66 ACTAATTTATCCCCCTGAGTCAGATTCAGAAACTCTTTCCTTCGGGCATCCACATAACTAGTTCC
32323875 CACATACTTCCCTTAGAAAGAAGTTTTGAAGAATTCTCATGTCAATCAGTCAACCTGAGTACCCT
131 CACATACTTCCCTTAGAAAGAAGTTTTGAAGAATTCTCATGTCAATCAGTCAACCTGAGTACCCT
32323940 TTTTAACTGTAAGCCACCACTAATAGGCTTCGTCTTGTAACAATGACACGAATCCTTTTAGTTTC
196 TTTTAACTGTAAGCCACCACTAATAGGCTTCGTCTTGTAACAATGACACGAATCCTTTTAGTTTC
*
32324005 TGTTCGGAAGTGCAGTCGAGGTCATCCATGATCTTCTTTATGGCCTTAATCCAATATTCAGCCAC
261 TGTTCGGAAGTGCAGTCGAGGTCATCCATGATCTTCTCTATGGCCTTAATCCAATATTCAGCCAC
32324070 GTTAGGAGCAATTCCAGCAATACCCCTAAAAATC
326 GTTAGGAGCAATTCCAGCAATACCCCTAAAAATC
*
32324104 AATCGGCTGCCACCATCCCACGTGCATAGTGGCTTAATCGTAAAAATTTAGCTTCATACTCAGCC
1 AATCGGCTGCCACCATCCCACGTGCATAGTGGCTTAATCGTAAAAATTCAGCTTCATACTCAGCC
*
32324169 ACTAATTTATCCCCTTGAGTCAGATTCAGAAACTCTTTCCTTCGGGCATCCACATAACTAGTTCC
66 ACTAATTTATCCCCCTGAGTCAGATTCAGAAACTCTTTCCTTCGGGCATCCACATAACTAGTTCC
32324234 CACATACTTCCCTTAGAAAGAAGTTTTGAAGAATTCTCATGTCAATCAGTCAACCTGAGTACCCT
131 CACATACTTCCCTTAGAAAGAAGTTTTGAAGAATTCTCATGTCAATCAGTCAACCTGAGTACCCT
32324299 TTTTAACTGTAAGCCACCACTAATAGGCTTCGTCTTGTAACAATGACACGAATCCTTTTAGTTTC
196 TTTTAACTGTAAGCCACCACTAATAGGCTTCGTCTTGTAACAATGACACGAATCCTTTTAGTTTC
32324364 TGTTCGGAAGTGCAGTCGAGGTCATCCATGATCTTCTCTATGGCCTTAATCCAATATTCAGCCAC
261 TGTTCGGAAGTGCAGTCGAGGTCATCCATGATCTTCTCTATGGCCTTAATCCAATATTCAGCCAC
32324429 GTTAGGAGCAATTCCAGCAATACCCCTAAAAATC
326 GTTAGGAGCAATTCCAGCAATACCCCTAAAAATC
32324463 TCAGCCCCAT
Statistics
Matches: 356, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
359 356 1.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (359 bp):
AATCGGCTGCCACCATCCCACGTGCATAGTGGCTTAATCGTAAAAATTCAGCTTCATACTCAGCC
ACTAATTTATCCCCCTGAGTCAGATTCAGAAACTCTTTCCTTCGGGCATCCACATAACTAGTTCC
CACATACTTCCCTTAGAAAGAAGTTTTGAAGAATTCTCATGTCAATCAGTCAACCTGAGTACCCT
TTTTAACTGTAAGCCACCACTAATAGGCTTCGTCTTGTAACAATGACACGAATCCTTTTAGTTTC
TGTTCGGAAGTGCAGTCGAGGTCATCCATGATCTTCTCTATGGCCTTAATCCAATATTCAGCCAC
GTTAGGAGCAATTCCAGCAATACCCCTAAAAATC
Found at i:32329699 original size:16 final size:17
Alignment explanation
Indices: 32329678--32329712 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
32329668 TAACTAAAAT
*
32329678 AAATAAATAAACAA-TA
1 AAATAAACAAACAACTA
32329694 AAATAAACAAACAACTA
1 AAATAAACAAACAACTA
32329711 AA
1 AA
32329713 CCAGTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.14
Consensus pattern (17 bp):
AAATAAACAAACAACTA
Found at i:32345066 original size:17 final size:16
Alignment explanation
Indices: 32345026--32345067 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 16
32345016 AAATCCGTAC
32345026 TTTTTTTATATTAATA
1 TTTTTTTATATTAATA
32345042 TTTATTTTAGT-TTAATA
1 TTT-TTTTA-TATTAATA
32345059 TATTTTTTA
1 T-TTTTTTA
32345068 ACTTTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 3 0.13
17 17 0.74
18 3 0.13
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (16 bp):
TTTTTTTATATTAATA
Found at i:32350254 original size:44 final size:46
Alignment explanation
Indices: 32350164--32350257 Score: 133
Period size: 44 Copynumber: 2.1 Consensus size: 46
32350154 ATAGAACTGT
32350164 AATGGAATAAAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
1 AATGGAATAAAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
*
32350210 AATGGAATAGAA-CTGTAAT-AGT-ATTC-TTGTGTTTGGTTGAATGG
1 AATGGAATA-AAGCTGTAATCAGTAATTCAAT-TGTTTGGTTGAATGG
32350254 AATG
1 AATG
32350258 ATGTTGTAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
43 1 0.02
44 23 0.51
45 3 0.07
46 16 0.36
47 2 0.04
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (46 bp):
AATGGAATAAAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
Found at i:32350478 original size:57 final size:58
Alignment explanation
Indices: 32350347--32350482 Score: 168
Period size: 58 Copynumber: 2.4 Consensus size: 58
32350337 TATTGTTATT
* * *
32350347 AAATTTTAATAAGATTATTATTAAAAATAATTTAATAAAAATAATAAATAATGTAACC
1 AAATTTTAACAAAATTATTATTAAAAATAATTTAATAAAAATAATAAATAATGTAACA
* * * * * *
32350405 ATATTTTAACATAATTATTATTAAATATAATTTAAT-AAAATAATATATAATTTAATA
1 AAATTTTAACAAAATTATTATTAAAAATAATTTAATAAAAATAATAAATAATGTAACA
32350462 AAATTCTTAA-AAAATTATTAT
1 AAATT-TTAACAAAATTATTAT
32350483 ATGAATTAAA
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
57 31 0.47
58 35 0.53
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.41
Consensus pattern (58 bp):
AAATTTTAACAAAATTATTATTAAAAATAATTTAATAAAAATAATAAATAATGTAACA
Found at i:32354487 original size:20 final size:20
Alignment explanation
Indices: 32354464--32354529 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 20
32354454 ACACTTTGGT
*
32354464 GCCTTTATTTGCACTTCGGC
1 GCCTCTATTTGCACTTCGGC
* **
32354484 GCCTCTGTTTGCACTTCGAT
1 GCCTCTATTTGCACTTCGGC
* * * *
32354504 GCCTATGTTTGCACTACGGT
1 GCCTCTATTTGCACTTCGGC
32354524 GCCTCT
1 GCCTCT
32354530 GGTTAGCATT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.11, C:0.30, G:0.21, T:0.38
Consensus pattern (20 bp):
GCCTCTATTTGCACTTCGGC
Found at i:32364981 original size:15 final size:13
Alignment explanation
Indices: 32364946--32364971 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32364936 TTAGGGTTTT
32364946 ACTAAAAATAATA
1 ACTAAAAATAATA
32364959 ACTAAAAATAATA
1 ACTAAAAATAATA
32364972 TAATTAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (13 bp):
ACTAAAAATAATA
Found at i:32368081 original size:128 final size:128
Alignment explanation
Indices: 32367853--32368124 Score: 544
Period size: 128 Copynumber: 2.1 Consensus size: 128
32367843 ACTTCTGACT
32367853 CCAAAAGCACTTTTGGAAGAAAAGCTGTGCAGAACAAGCTGCTTTTGGCTGAAATTTTTAACTTT
1 CCAAAAGCACTTTTGGAAGAAAAGCTGTGCAGAACAAGCTGCTTTTGGCTGAAATTTTTAACTTT
32367918 TCAAAAGTGCTTTTCAAAAGCACTTCTGAAAAGGAGAAGCTAAAAATTTTAGCTTTTCCTCTC
66 TCAAAAGTGCTTTTCAAAAGCACTTCTGAAAAGGAGAAGCTAAAAATTTTAGCTTTTCCTCTC
32367981 CCAAAAGCACTTTTGGAAGAAAAGCTGTGCAGAACAAGCTGCTTTTGGCTGAAATTTTTAACTTT
1 CCAAAAGCACTTTTGGAAGAAAAGCTGTGCAGAACAAGCTGCTTTTGGCTGAAATTTTTAACTTT
32368046 TCAAAAGTGCTTTTCAAAAGCACTTCTGAAAAGGAGAAGCTAAAAATTTTAGCTTTTCCTCTC
66 TCAAAAGTGCTTTTCAAAAGCACTTCTGAAAAGGAGAAGCTAAAAATTTTAGCTTTTCCTCTC
32368109 CCAAAAGCACTTTTGG
1 CCAAAAGCACTTTTGG
32368125 TGCTTAATTA
Statistics
Matches: 144, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
128 144 1.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (128 bp):
CCAAAAGCACTTTTGGAAGAAAAGCTGTGCAGAACAAGCTGCTTTTGGCTGAAATTTTTAACTTT
TCAAAAGTGCTTTTCAAAAGCACTTCTGAAAAGGAGAAGCTAAAAATTTTAGCTTTTCCTCTC
Found at i:32368627 original size:13 final size:13
Alignment explanation
Indices: 32368549--32368627 Score: 52
Period size: 13 Copynumber: 6.1 Consensus size: 13
32368539 TTTAAACCAA
* *
32368549 ACTTTTTAAAAGC
1 ACTTTTCAAAAGT
* *
32368562 ACTTATCAAAAAT
1 ACTTTTCAAAAGT
* *
32368575 ACTTATCAAAAAT
1 ACTTTTCAAAAGT
* *
32368588 ACTTTTTCACAA-C
1 AC-TTTTCAAAAGT
* *
32368601 ACTTTTCTACAGT
1 ACTTTTCAAAAGT
32368614 ACTTTTCAAAAGT
1 ACTTTTCAAAAGT
32368627 A
1 A
32368628 TTGCTAAACT
Statistics
Matches: 51, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
12 6 0.12
13 38 0.75
14 7 0.14
ACGTcount: A:0.41, C:0.19, G:0.04, T:0.37
Consensus pattern (13 bp):
ACTTTTCAAAAGT
Found at i:32368759 original size:30 final size:30
Alignment explanation
Indices: 32368725--32368782 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
32368715 TTCTTTTAAC
32368725 AATTAAATCGTGAATTATTATTTATTAAAA
1 AATTAAATCGTGAATTATTATTTATTAAAA
* * *
32368755 AATTAAATTGTGATTTATTTTTTATTAA
1 AATTAAATCGTGAATTATTATTTATTAA
32368783 CTAGCATTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (30 bp):
AATTAAATCGTGAATTATTATTTATTAAAA
Found at i:32369355 original size:3 final size:3
Alignment explanation
Indices: 32369347--32369376 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
32369337 AATGCGACTT
32369347 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
32369377 ATTGGACATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:32370074 original size:18 final size:17
Alignment explanation
Indices: 32370053--32370097 Score: 63
Period size: 19 Copynumber: 2.5 Consensus size: 17
32370043 CAGTTAAAAT
32370053 TATTTTATAATAAGATAA
1 TATTTTATAATAA-ATAA
*
32370071 TATTTTTACAATAAATAA
1 TA-TTTTATAATAAATAA
32370089 TATTTTATA
1 TATTTTATA
32370098 TAGACTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 6 0.25
18 8 0.33
19 10 0.42
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (17 bp):
TATTTTATAATAAATAA
Found at i:32370083 original size:19 final size:18
Alignment explanation
Indices: 32370055--32370094 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
32370045 GTTAAAATTA
*
32370055 TTTTATAATAAGATAATAT
1 TTTTACAATAA-ATAATAT
32370074 TTTTACAATAAATAATAT
1 TTTTACAATAAATAATAT
32370092 TTT
1 TTT
32370095 ATATAGACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
TTTTACAATAAATAATAT
Found at i:32371628 original size:20 final size:20
Alignment explanation
Indices: 32371586--32371644 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 20
32371576 TTCGAGGTAA
*
32371586 TTTAAATTTTTTTTAAGATT
1 TTTAAATTTTTTTTAAGAAT
* **
32371606 TTTAGATTTTTTTTTTGAAT
1 TTTAAATTTTTTTTAAGAAT
32371626 TTTAAGATATATTTTTTAA
1 TTTAA-AT-T-TTTTTTAA
32371645 TTGGGACAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
20 20 0.69
21 2 0.07
22 1 0.03
23 6 0.21
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (20 bp):
TTTAAATTTTTTTTAAGAAT
Found at i:32376563 original size:27 final size:27
Alignment explanation
Indices: 32376533--32376586 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
32376523 TATATTGTAT
32376533 ACATTAATTATGGATGCAGAAAAGAGG
1 ACATTAATTATGGATGCAGAAAAGAGG
32376560 ACATTAATTATGGATGCAGAAAAGAGG
1 ACATTAATTATGGATGCAGAAAAGAGG
32376587 CTTGGTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.07, G:0.26, T:0.22
Consensus pattern (27 bp):
ACATTAATTATGGATGCAGAAAAGAGG
Found at i:32381252 original size:32 final size:31
Alignment explanation
Indices: 32381185--32381255 Score: 81
Period size: 32 Copynumber: 2.3 Consensus size: 31
32381175 AGTGTGGCCG
* **
32381185 TGTGGGCCACAGGGCAAGGCCAAGTTGGGTG
1 TGTGGGCCACAGGGCAAGGCCAAGTTGAGCA
*
32381216 TGTGGGCCACATGGGTAAGGCCAA-TATGAGCA
1 TGTGGGCCACA-GGGCAAGGCCAAGT-TGAGCA
32381248 TGTGGGCC
1 TGTGGGCC
32381256 TAGAATTCTG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
31 12 0.35
32 22 0.65
ACGTcount: A:0.21, C:0.20, G:0.41, T:0.18
Consensus pattern (31 bp):
TGTGGGCCACAGGGCAAGGCCAAGTTGAGCA
Found at i:32381671 original size:14 final size:15
Alignment explanation
Indices: 32381652--32381689 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 15
32381642 GATGGTTGGA
32381652 GATGGTGTGT-AGAG
1 GATGGTGTGTAAGAG
32381666 GATGGTGTGTAGAGAG
1 GATGGTGTGTA-AGAG
32381682 GATGGTGT
1 GATGGTGT
32381690 CTGATCTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 10 0.45
16 12 0.55
ACGTcount: A:0.21, C:0.00, G:0.50, T:0.29
Consensus pattern (15 bp):
GATGGTGTGTAAGAG
Found at i:32407418 original size:31 final size:29
Alignment explanation
Indices: 32407379--32408000 Score: 214
Period size: 31 Copynumber: 20.3 Consensus size: 29
32407369 ATATACCCAA
32407379 CAATTCGGCAATGTATAACCATTCACGAAT
1 CAATTCGGCAATGTATAACCATT-ACGAAT
* * *
32407409 CAAGTTCGGCAATGTATAATCATACACAAAT
1 CAA-TTCGGCAATGTATAACCAT-TACGAAT
* * * ** *
32407440 CAAATTCGACATTCTATATTCATAAAC-AATT
1 C-AATTCGGCAATGTATAACCAT-TACGAA-T
* * *
32407471 CAATGTCGACAATATATAACCATTTACAAAT
1 CAAT-TCGGCAATGTATAACCA-TTACGAAT
* ** *
32407502 TAATTTCAACAATGTACAACCATATACGAAT
1 CAA-TTCGGCAATGTATAACCAT-TACGAAT
* * *
32407533 CAATTCAGG-AACT-TATATCCATATACCAAA
1 CAATTC-GGCAA-TGTATAACCAT-TACGAAT
* *
32407563 CAATTCGACAATGTATAACCATACACGAAT
1 CAATTCGGCAATGTATAACCAT-TACGAAT
* * * *
32407593 CAAGTTCGACAATGTATAATCATACACAAAT
1 CAA-TTCGGCAATGTATAACCAT-TACGAAT
* * ** *
32407624 CAAATTCGGCATTCTATATTCATAAAC-AATT
1 C-AATTCGGCAATGTATAACCAT-TACGAA-T
* * *
32407655 CAATGTCGACAATATATAACCATGTATGAAT
1 CAAT-TCGGCAATGTATAACCAT-TACGAAT
* * *
32407686 TAATTTCAGCAATGTACAACCATATACGAAT
1 CAA-TTCGGCAATGTATAACCAT-TACGAAT
** * * *
32407717 CAATTCAACAACT-TATATCCATATACCAAA
1 CAATTCGGCAA-TGTATAACCAT-TACGAAT
* *
32407747 CAATTCGGCAATGTATAACCGTACACGAAT
1 CAATTCGGCAATGTATAACCAT-TACGAAT
* * * *
32407777 CAAGATCGACAATGTATAATCATATACAAAT
1 CAA-TTCGGCAATGTATAACCAT-TACGAAT
* * ** *
32407808 CCAATTTGGCAATCTATATTCATAAAC-AATT
1 -CAATTCGGCAATGTATAACCAT-TACGAA-T
* * * *
32407839 CAGTATCAGCAATATATAACCATGTACAAAT
1 CAAT-TCGGCAATGTATAACCAT-TACGAAT
* * * *
32407870 TAATTTCAGCAAGGTACAACCATGTACGAAT
1 CAA-TTCGGCAATGTATAACCAT-TACGAAT
* * *
32407901 CAATTCGGCAACT-TATATCCATATACCAAA
1 CAATTCGGCAA-TGTATAACCAT-TACGAAT
* *
32407931 CAATTCGGCAAGGTATAACCATACACGAAT
1 CAATTCGGCAATGTATAACCAT-TACGAAT
* * *
32407961 CAAGTTCGACAATGTATAATCATATACAAAT
1 CAA-TTCGGCAATGTATAACCAT-TACGAAT
32407992 CCAATTCGG
1 -CAATTCGG
32408001 GATCCTATAT
Statistics
Matches: 451, Mismatches: 110, Indels: 61
0.73 0.18 0.10
Matches are distributed among these distances:
29 3 0.01
30 151 0.33
31 277 0.61
32 20 0.04
ACGTcount: A:0.42, C:0.21, G:0.10, T:0.28
Consensus pattern (29 bp):
CAATTCGGCAATGTATAACCATTACGAAT
Found at i:32407667 original size:153 final size:154
Alignment explanation
Indices: 32407386--32407807 Score: 333
Period size: 153 Copynumber: 2.7 Consensus size: 154
32407376 CAACAATTCG
* * * * *
32407386 GCAATGTATAACCAT-TCACGAATCAAGTTCGGCAATGTATAATCATACACAAATCAAATTCGAC
1 GCAATGTACAACCATAT-ACCAAACAA-TTCGACAATGTATAACCATACACAAATC-AATTCGAC
* * * * * ** *
32407450 ATTCTATATTCATAAACAATTC-AATGTCGACAATATATAACCATTTACAAATTAATTTCAACAA
63 AATGTATAATCATACACAAATCAAATGTCGACAATATATAACCATAAACAAATTAATGTCAACAA
*
32407514 TGTACAACCATATACGAATCAA-TTCA
128 TATACAACCATATACGAATCAATTTCA
* * * *
32407540 GGAACT-TATATCCATATACCAAACAATTCGACAATGTATAACCATACACGAATCAAGTTCGACA
1 GCAA-TGTACAACCATATACCAAACAATTCGACAATGTATAACCATACACAAATCAA-TTCGACA
* * * ** *
32407604 ATGTATAATCATACACAAATCAAAT-TCGGCATTCTATATTCATAAAC-AATTCAATGTCGACAA
64 ATGTATAATCATACACAAATCAAATGTCGACAATATATAACCATAAACAAATT-AATGTCAACAA
* * * *
32407667 TATATAACCATGTATGAATTAATTTCA
128 TATACAACCATATACGAATCAATTTCA
* * * * * *
32407694 GCAATGTACAACCATATACGAATCAATTCAACAACT-TATATCCATATACCAAA-CAATTCGGCA
1 GCAATGTACAACCATATACCAAACAATTCGACAA-TGTATAACCATACA-CAAATCAATTCGACA
* * * * * *
32407757 ATGTATAACCGTACACGAATC-AA-GATCGACAATGTATAATCATATACAAAT
64 ATGTATAATCATACACAAATCAAATG-TCGACAATATATAACCATAAACAAAT
32407808 CCAATTTGGC
Statistics
Matches: 212, Mismatches: 44, Indels: 24
0.76 0.16 0.09
Matches are distributed among these distances:
152 8 0.04
153 131 0.62
154 67 0.32
155 6 0.03
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (154 bp):
GCAATGTACAACCATATACCAAACAATTCGACAATGTATAACCATACACAAATCAATTCGACAAT
GTATAATCATACACAAATCAAATGTCGACAATATATAACCATAAACAAATTAATGTCAACAATAT
ACAACCATATACGAATCAATTTCA
Found at i:32407689 original size:184 final size:184
Alignment explanation
Indices: 32407337--32408069 Score: 1119
Period size: 184 Copynumber: 4.0 Consensus size: 184
32407327 TATATATATT
* * * *
32407337 CATATACGAATCCAATTTAGCAA-TGAATATCGATATACCCAACAATTCGGCAATGTATAACCAT
1 CATATACGAAT-CAATTCAGCAACT-TATATCCATATACCAAACAATTCGGCAATGTATAACCAT
* * *
32407401 TCACGAATCAAGTTCGGCAATGTATAATCATACACAAATCAAATTCGACATTCTATATTCATAAA
64 ACACGAATCAAGTTCGACAATGTATAATCATACACAAATCAAATTCGGCATTCTATATTCATAAA
* * *
32407466 CAATTCAATGTCGACAATATATAACCATTTACAAATTAATTTCAACAATGTACAAC
129 CAATTCAATATCGACAATATATAACCATGTACAAATTAATTTCAGCAATGTACAAC
* *
32407522 CATATACGAATCAATTCAGGAACTTATATCCATATACCAAACAATTCGACAATGTATAACCATAC
1 CATATACGAATCAATTCAGCAACTTATATCCATATACCAAACAATTCGGCAATGTATAACCATAC
32407587 ACGAATCAAGTTCGACAATGTATAATCATACACAAATCAAATTCGGCATTCTATATTCATAAACA
66 ACGAATCAAGTTCGACAATGTATAATCATACACAAATCAAATTCGGCATTCTATATTCATAAACA
* **
32407652 ATTCAATGTCGACAATATATAACCATGTATGAATTAATTTCAGCAATGTACAAC
131 ATTCAATATCGACAATATATAACCATGTACAAATTAATTTCAGCAATGTACAAC
* *
32407706 CATATACGAATCAATTCAACAACTTATATCCATATACCAAACAATTCGGCAATGTATAACCGTAC
1 CATATACGAATCAATTCAGCAACTTATATCCATATACCAAACAATTCGGCAATGTATAACCATAC
* * * * *
32407771 ACGAATCAAGATCGACAATGTATAATCATATACAAATCCAATTTGGCAATCTATATTCATAAACA
66 ACGAATCAAGTTCGACAATGTATAATCATACACAAATCAAATTCGGCATTCTATATTCATAAACA
* *
32407836 ATTCAGTATC-AGCAATATATAACCATGTACAAATTAATTTCAGCAAGGTACAAC
131 ATTCAATATCGA-CAATATATAACCATGTACAAATTAATTTCAGCAATGTACAAC
* * *
32407890 CATGTACGAATCAATTCGGCAACTTATATCCATATACCAAACAATTCGGCAAGGTATAACCATAC
1 CATATACGAATCAATTCAGCAACTTATATCCATATACCAAACAATTCGGCAATGTATAACCATAC
* * * *
32407955 ACGAATCAAGTTCGACAATGTATAATCATATACAAATCCAATTCGGGATCCTATATTCATAAACA
66 ACGAATCAAGTTCGACAATGTATAATCATACACAAATCAAATTCGGCATTCTATATTCATAAACA
* * *
32408020 ATTCAATATTGACAATATATAACCATGTACAAATTAATTTTACCAATGTA
131 ATTCAATATCGACAATATATAACCATGTACAAATTAATTTCAGCAATGTA
32408070 TATAACATTT
Statistics
Matches: 503, Mismatches: 42, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
183 1 0.00
184 489 0.97
185 13 0.03
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.28
Consensus pattern (184 bp):
CATATACGAATCAATTCAGCAACTTATATCCATATACCAAACAATTCGGCAATGTATAACCATAC
ACGAATCAAGTTCGACAATGTATAATCATACACAAATCAAATTCGGCATTCTATATTCATAAACA
ATTCAATATCGACAATATATAACCATGTACAAATTAATTTCAGCAATGTACAAC
Found at i:32412364 original size:12 final size:12
Alignment explanation
Indices: 32412347--32412371 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32412337 AAAATCTGAT
32412347 TTCAATGTGTAA
1 TTCAATGTGTAA
32412359 TTCAATGTGTAA
1 TTCAATGTGTAA
32412371 T
1 T
32412372 GTGTATAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (12 bp):
TTCAATGTGTAA
Found at i:32412893 original size:190 final size:190
Alignment explanation
Indices: 32412570--32412949 Score: 760
Period size: 190 Copynumber: 2.0 Consensus size: 190
32412560 CTAAGTATTT
32412570 AAAGAATTAAAACTTAACAAATTGGGCCACTTTGACAATTTGGCCTGATTTTTAGCTAAGTCTAA
1 AAAGAATTAAAACTTAACAAATTGGGCCACTTTGACAATTTGGCCTGATTTTTAGCTAAGTCTAA
32412635 TTTAAATTTCTTGATTGGGCTTGGAATATCTTATTGGGCCGTTTCTTCAAGCATTTGGGCTTGTA
66 TTTAAATTTCTTGATTGGGCTTGGAATATCTTATTGGGCCGTTTCTTCAAGCATTTGGGCTTGTA
32412700 ATCCGTTCTCTCTCGAAATTGGTTCTTTGATGCTTGTAACTGAGATCCAATGCACCTTAG
131 ATCCGTTCTCTCTCGAAATTGGTTCTTTGATGCTTGTAACTGAGATCCAATGCACCTTAG
32412760 AAAGAATTAAAACTTAACAAATTGGGCCACTTTGACAATTTGGCCTGATTTTTAGCTAAGTCTAA
1 AAAGAATTAAAACTTAACAAATTGGGCCACTTTGACAATTTGGCCTGATTTTTAGCTAAGTCTAA
32412825 TTTAAATTTCTTGATTGGGCTTGGAATATCTTATTGGGCCGTTTCTTCAAGCATTTGGGCTTGTA
66 TTTAAATTTCTTGATTGGGCTTGGAATATCTTATTGGGCCGTTTCTTCAAGCATTTGGGCTTGTA
32412890 ATCCGTTCTCTCTCGAAATTGGTTCTTTGATGCTTGTAACTGAGATCCAATGCACCTTAG
131 ATCCGTTCTCTCTCGAAATTGGTTCTTTGATGCTTGTAACTGAGATCCAATGCACCTTAG
32412950 CTGCAAGATT
Statistics
Matches: 190, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
190 190 1.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (190 bp):
AAAGAATTAAAACTTAACAAATTGGGCCACTTTGACAATTTGGCCTGATTTTTAGCTAAGTCTAA
TTTAAATTTCTTGATTGGGCTTGGAATATCTTATTGGGCCGTTTCTTCAAGCATTTGGGCTTGTA
ATCCGTTCTCTCTCGAAATTGGTTCTTTGATGCTTGTAACTGAGATCCAATGCACCTTAG
Found at i:32413699 original size:33 final size:34
Alignment explanation
Indices: 32413645--32413719 Score: 98
Period size: 33 Copynumber: 2.2 Consensus size: 34
32413635 ATATTTAAAC
* * *
32413645 AAATTAATTACTGACACTTATTTAAGTTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTAAACTA
*
32413679 AAATTAATT-CTAACACTTATTTGAGCTAAACTA
1 AAATTAATTACTAACACTTATTTAAGCTAAACTA
*
32413712 AATTTAAT
1 AAATTAAT
32413720 AAACTAACTC
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 27 0.75
34 9 0.25
ACGTcount: A:0.43, C:0.12, G:0.07, T:0.39
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTAAACTA
Found at i:32417388 original size:12 final size:12
Alignment explanation
Indices: 32417371--32417395 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32417361 AAAATCTGAT
32417371 TTCAATGTGTAA
1 TTCAATGTGTAA
32417383 TTCAATGTGTAA
1 TTCAATGTGTAA
32417395 T
1 T
32417396 ATGTATAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (12 bp):
TTCAATGTGTAA
Found at i:32421440 original size:31 final size:31
Alignment explanation
Indices: 32421396--32421800 Score: 137
Period size: 31 Copynumber: 13.2 Consensus size: 31
32421386 TATACCCAAC
* * * *
32421396 AATTCAGCAATGTATAACCATTCACGAGTCA
1 AATTCGGCAATGTATAACCATACACAAATCA
* *
32421427 AGTTCGGCAATGTATAATCATACACAAATCA
1 AATTCGGCAATGTATAACCATACACAAATCA
* * ** * **
32421458 AATTCGGCATTCTATATTCATAAAC-AATTT
1 AATTCGGCAATGTATAACCATACACAAATCA
* * ** *
32421488 AATGTCGACAATATATAACCATGTA-AGAATTA
1 AAT-TCGGCAATGTATAACCATACACA-AATCA
* ** * * *
32421520 ATTTTAGCAATGTACAACCATATACCCAA-C-
1 AATTCGGCAATGTATAACCATACA-CAAATCA
*
32421550 AATTCGGCAATGTATAACCATACACGAATCA
1 AATTCGGCAATGTATAACCATACACAAATCA
* * * * *
32421581 AGTTCGGTAATGTATAATCATATACAAATCC
1 AATTCGGCAATGTATAACCATACACAAATCA
* ** * *
32421612 AATTCGGC-ATCCTATATTCATAAACAATTC-
1 AATTCGGCAAT-GTATAACCATACACAAATCA
** * **
32421642 AATATCGATAATATATAACCATGTACAAAT-A
1 AAT-TCGGCAATGTATAACCATACACAAATCA
* * * * *
32421673 AATTTCAGCAAGGTACAACCATATACGAATC-
1 AA-TTCGGCAATGTATAACCATACACAAATCA
* * ** * *
32421704 AATTGGGTAACCTATATCCATATACCAAA-C-
1 AATTCGGCAATGTATAACCATACA-CAAATCA
* * *
32421734 AATTCGGCAAGGTATAACCATAAACTAATCA
1 AATTCGGCAATGTATAACCATACACAAATCA
* * * * * *
32421765 AGTTTGGTAATGTATAATCATATACAAATCC
1 AATTCGGCAATGTATAACCATACACAAATCA
32421796 AATTC
1 AATTC
32421801 AGCATCCTAT
Statistics
Matches: 269, Mismatches: 89, Indels: 32
0.69 0.23 0.08
Matches are distributed among these distances:
29 6 0.02
30 66 0.25
31 186 0.69
32 11 0.04
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (31 bp):
AATTCGGCAATGTATAACCATACACAAATCA
Found at i:32421707 original size:154 final size:154
Alignment explanation
Indices: 32421385--32421698 Score: 495
Period size: 154 Copynumber: 2.0 Consensus size: 154
32421375 ATGAAAATCG
* *
32421385 ATATACCCAACAATTCAGCAATGTATAACCATTCACGAGTCAAGTTCGGCAATGTATAATCATAC
1 ATATACCCAACAATTCAGCAATGTATAACCATACACGAATCAAGTTCGGCAATGTATAATCATAC
* * *
32421450 ACAAATCAAATTCGGCATTCTATATTCATAAACAATTTAATGTCGACAATATATAACCATGTAAG
66 ACAAATCAAATTCGGCATCCTATATTCATAAACAATTCAATATCGACAATATATAACCATGTAAG
* * *
32421515 AATTAATTTTAGCAATGTACAACC
131 AATAAATTTCAGCAAGGTACAACC
* * *
32421539 ATATACCCAACAATTCGGCAATGTATAACCATACACGAATCAAGTTCGGTAATGTATAATCATAT
1 ATATACCCAACAATTCAGCAATGTATAACCATACACGAATCAAGTTCGGCAATGTATAATCATAC
* *
32421604 ACAAATCCAATTCGGCATCCTATATTCATAAACAATTCAATATCGATAATATATAACCATGTACA
66 ACAAATCAAATTCGGCATCCTATATTCATAAACAATTCAATATCGACAATATATAACCATGTA-A
32421669 -AATAAATTTCAGCAAGGTACAACC
130 GAATAAATTTCAGCAAGGTACAACC
32421693 ATATAC
1 ATATAC
32421699 GAATCAATTG
Statistics
Matches: 146, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
154 145 0.99
155 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (154 bp):
ATATACCCAACAATTCAGCAATGTATAACCATACACGAATCAAGTTCGGCAATGTATAATCATAC
ACAAATCAAATTCGGCATCCTATATTCATAAACAATTCAATATCGACAATATATAACCATGTAAG
AATAAATTTCAGCAAGGTACAACC
Found at i:32421725 original size:154 final size:154
Alignment explanation
Indices: 32421385--32421765 Score: 471
Period size: 154 Copynumber: 2.5 Consensus size: 154
32421375 ATGAAAATCG
* ** * *
32421385 ATATACCCAACAATTCAGCAATGTATAACCATTCACGAGTCAAGTTCGGCAATGTATAATCATAC
1 ATATACCCAACAATTCGGCAACCTATAACCATACACGAATCAAGTTCGGCAATGTATAATCATAC
* * *
32421450 ACAAATCAAATTCGGCATTCTATATTCATAAACAATTTAATGTCGACAATATATAACCATGTAAG
66 ACAAATCAAATTCGGCATCCTATATTCATAAACAATTCAATATCGACAATATATAACCATGTAAG
* * *
32421515 AATTAATTTTAGCAATGTACAACC
131 AATAAATTTCAGCAAGGTACAACC
** * *
32421539 ATATACCCAACAATTCGGCAATGTATAACCATACACGAATCAAGTTCGGTAATGTATAATCATAT
1 ATATACCCAACAATTCGGCAACCTATAACCATACACGAATCAAGTTCGGCAATGTATAATCATAC
* *
32421604 ACAAATCCAATTCGGCATCCTATATTCATAAACAATTCAATATCGATAATATATAACCATGTACA
66 ACAAATCAAATTCGGCATCCTATATTCATAAACAATTCAATATCGACAATATATAACCATGTA-A
32421669 -AATAAATTTCAGCAAGGTACAACC
130 GAATAAATTTCAGCAAGGTACAACC
* * * * * * * * *
32421693 ATATA-CGAATCAATTGGGTAACCTATATCCATATACCAAACAA-TTCGGCAAGGTATAACCATA
1 ATATACCCAA-CAATTCGGCAACCTATAACCATACACGAATCAAGTTCGGCAATGTATAATCATA
* *
32421756 AACTAATCAA
65 CACAAATCAA
32421766 GTTTGGTAAT
Statistics
Matches: 197, Mismatches: 28, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
153 27 0.14
154 169 0.86
155 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (154 bp):
ATATACCCAACAATTCGGCAACCTATAACCATACACGAATCAAGTTCGGCAATGTATAATCATAC
ACAAATCAAATTCGGCATCCTATATTCATAAACAATTCAATATCGACAATATATAACCATGTAAG
AATAAATTTCAGCAAGGTACAACC
Found at i:32421874 original size:62 final size:60
Alignment explanation
Indices: 32421535--32421874 Score: 202
Period size: 62 Copynumber: 5.5 Consensus size: 60
32421525 AGCAATGTAC
* * * * * * *
32421535 AACCATATACCCAA-CAATTCGGCAATGTATAACCATACACGAATCAAGTTCGGTAATGTAT
1 AACCATATA-CAAATCAATTCAGCAAGGTATATCCATAAACGAATCAA-TTCGATAATATAT
* * *** *
32421596 AATCATATACAAATCCAATTCGGCATCCTATATTCATAAAC-AATTCAATATCGATAATATAT
1 AACCATATACAAAT-CAATTCAGCAAGGTATATCCATAAACGAA-TCAAT-TCGATAATATAT
* * * * * * * **
32421658 AACCATGTACAAATAAATTTCAGCAAGGTACAACCATATACGAATCAATTGGGTAACCTAT
1 AACCATATACAAATCAA-TTCAGCAAGGTATATCCATAAACGAATCAATTCGATAATATAT
* * * * * * *
32421719 ATCCATATACCAAA-CAATTCGGCAAGGTATAACCATAAACTAATCAAGTTTGGTAATGTAT
1 AACCATATA-CAAATCAATTCAGCAAGGTATATCCATAAACGAATCAA-TTCGATAATATAT
* *** * *
32421780 AATCATATACAAATCCAATTCAGCATCCTATATTCATAAAC-AATTCAATATCGACAATATAT
1 AACCATATACAAAT-CAATTCAGCAAGGTATATCCATAAACGAA-TCAAT-TCGATAATATAT
* * *
32421842 AACCATGTACAAATTAATTTCAGCAATGTATAT
1 AACCATATACAAATCAA-TTCAGCAAGGTATAT
32421875 AACATTTATA
Statistics
Matches: 213, Mismatches: 53, Indels: 25
0.73 0.18 0.09
Matches are distributed among these distances:
60 33 0.15
61 52 0.24
62 126 0.59
63 2 0.01
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (60 bp):
AACCATATACAAATCAATTCAGCAAGGTATATCCATAAACGAATCAATTCGATAATATAT
Found at i:32424534 original size:29 final size:28
Alignment explanation
Indices: 32424495--32424617 Score: 88
Period size: 29 Copynumber: 4.3 Consensus size: 28
32424485 TAAAAGAAGT
*
32424495 GCCTTTATGGCTATCTCTATTAAAAGGAA
1 GCCTTTGTGGC-ATCTCTATTAAAAGGAA
* * * *
32424524 GCATTTGTGGCGATCTTTGTTAAATGGAA
1 GCCTTTGTGGC-ATCTCTATTAAAAGGAA
* * *
32424553 TCCTTT-TAGGCAATTTCTATTAAATGGAA
1 GCCTTTGT-GGC-ATCTCTATTAAAAGGAA
* * *
32424582 GTCTTTGTGGCAT-TCTATGTCAAAGGAT
1 GCCTTTGTGGCATCTCTAT-TAAAAGGAA
32424610 GCCTTTGT
1 GCCTTTGT
32424618 AACGCCCCAA
Statistics
Matches: 73, Mismatches: 18, Indels: 7
0.74 0.18 0.07
Matches are distributed among these distances:
27 5 0.07
28 16 0.22
29 51 0.70
30 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.39
Consensus pattern (28 bp):
GCCTTTGTGGCATCTCTATTAAAAGGAA
Found at i:32425131 original size:11 final size:11
Alignment explanation
Indices: 32425117--32425143 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
32425107 GTTTTTCTTC
32425117 TTTTCCTTTCT
1 TTTTCCTTTCT
32425128 TTTTCCTTTCT
1 TTTTCCTTTCT
32425139 TTTTC
1 TTTTC
32425144 TTCATTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTCCTTTCT
Found at i:32425152 original size:10 final size:10
Alignment explanation
Indices: 32425108--32425145 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
32425098 TCCTCTTTTG
32425108 TTTTTC-TTC
1 TTTTTCTTTC
*
32425117 TTTTCCTTTC
1 TTTTTCTTTC
32425127 TTTTTCCTTTC
1 TTTTT-CTTTC
32425138 TTTTTCTT
1 TTTTTCTT
32425146 CATTTTTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 5 0.20
10 10 0.40
11 10 0.40
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:32428297 original size:34 final size:34
Alignment explanation
Indices: 32428259--32428327 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
32428249 ATACAACGTA
*
32428259 AGAAGGTGGTGGAGAGGTCTCGAGAGGATCCAAC
1 AGAAGGTGGTGGAGAGGTCTAGAGAGGATCCAAC
32428293 AGAAGGTGGTGGAGAGGTCTAGAGAGGATCCAAC
1 AGAAGGTGGTGGAGAGGTCTAGAGAGGATCCAAC
32428327 A
1 A
32428328 CCCCAAGTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.13, G:0.41, T:0.14
Consensus pattern (34 bp):
AGAAGGTGGTGGAGAGGTCTAGAGAGGATCCAAC
Found at i:32429807 original size:23 final size:21
Alignment explanation
Indices: 32429777--32429851 Score: 69
Period size: 23 Copynumber: 3.3 Consensus size: 21
32429767 GAAAAAAAGC
32429777 CCTAAATTTGTGGAATACAAATG
1 CCTAAATTT-TGGAA-ACAAATG
* * *
32429800 CCTAAATTTTAGCCAAAGAAATC
1 CCTAAATTTT-G-GAAACAAATG
32429823 CCTAAAATTTTGGAAGACAAATG
1 CCT-AAATTTTGGAA-ACAAATG
32429846 CCTAAA
1 CCTAAA
32429852 ACTTAGCCTA
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
22 6 0.14
23 27 0.64
24 9 0.21
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.27
Consensus pattern (21 bp):
CCTAAATTTTGGAAACAAATG
Found at i:32432152 original size:45 final size:44
Alignment explanation
Indices: 32432051--32432200 Score: 182
Period size: 45 Copynumber: 3.4 Consensus size: 44
32432041 CAGAAATGAG
* *
32432051 TAAGACCATAGCTGAAAGACGCTATGGCATCA-TA-ATGAA--AA
1 TAAGACCATAGCTGAAAGACACTATGGCATCATTATAT-AAGGAC
* *
32432092 TAAGACCATAACTGAAAGACACTATGGCATCATTATATATAGGGC
1 TAAGACCATAGCTGAAAGACACTATGGCATCATTATATA-AGGAC
* * *
32432137 TAAGACCATGGCTGAAAGACACTATGACATCATTGTATACAGGAC
1 TAAGACCATAGCTGAAAGACACTATGGCATCATTATATA-AGGAC
32432182 TAAGACCATAGCTGAAAGA
1 TAAGACCATAGCTGAAAGA
32432201 TGCTACGATA
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
41 30 0.32
42 3 0.03
43 3 0.03
45 57 0.61
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.21
Consensus pattern (44 bp):
TAAGACCATAGCTGAAAGACACTATGGCATCATTATATAAGGAC
Found at i:32434038 original size:21 final size:20
Alignment explanation
Indices: 32434009--32434054 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
32433999 CAAAATGCAA
32434009 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
32434030 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
32434050 T-AACC
1 TCAACC
32434055 ATTCCAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:32451766 original size:25 final size:25
Alignment explanation
Indices: 32451681--32451801 Score: 111
Period size: 25 Copynumber: 4.7 Consensus size: 25
32451671 CCTTAACCGG
*
32451681 TAGTCCTTGCGAAC-TCCCTCAATAGA
1 TAGTCCTTGCG-ACTTCCAT-AATAGA
* *
32451707 CAGTCCTTACGGACTTCCA-ACATAGGA
1 TAGTCCTTGC-GACTTCCATA-ATA-GA
*
32451734 TAGCCCTTGCGACTTCCATAATAGA
1 TAGTCCTTGCGACTTCCATAATAGA
**
32451759 TAGTCCTTGCGACTTCTGTAATAGA
1 TAGTCCTTGCGACTTCCATAATAGA
*
32451784 TAGTCCTTACAGACTTCC
1 TAGTCCTTGC-GACTTCC
32451802 CATAGATATG
Statistics
Matches: 78, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
25 34 0.44
26 30 0.38
27 14 0.18
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (25 bp):
TAGTCCTTGCGACTTCCATAATAGA
Found at i:32456515 original size:20 final size:19
Alignment explanation
Indices: 32456499--32456545 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
32456489 AAAAAAATTC
32456499 AAAAAATAATTTTAAAAATA
1 AAAAAATAA-TTTAAAAATA
*
32456519 AAAAAATTATTTAAAAAGTA
1 AAAAAATAATTTAAAAA-TA
*
32456539 CAAAAAT
1 AAAAAAT
32456546 GATAAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (19 bp):
AAAAAATAATTTAAAAATA
Found at i:32456517 original size:21 final size:20
Alignment explanation
Indices: 32456491--32456535 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
32456481 AAAATTTAAA
32456491 AAAAATTCAAAAAATAATTTT
1 AAAAATTCAAAAAATAA-TTT
* *
32456512 AAAAA-TAAAAAAATTATTT
1 AAAAATTCAAAAAATAATTT
32456531 AAAAA
1 AAAAA
32456536 GTACAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 8 0.36
20 9 0.41
21 5 0.23
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (20 bp):
AAAAATTCAAAAAATAATTT
Found at i:32456521 original size:19 final size:21
Alignment explanation
Indices: 32456499--32456545 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 21
32456489 AAAAAAATTC
32456499 AAAAAATAAT-TTTAAAAA-T
1 AAAAAATAATATTTAAAAAGT
*
32456518 AAAAAA-ATTATTTAAAAAGT
1 AAAAAATAATATTTAAAAAGT
32456538 ACAAAAAT
1 A-AAAAAT
32456546 GATAAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 2 0.09
19 14 0.61
20 2 0.09
21 5 0.22
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (21 bp):
AAAAAATAATATTTAAAAAGT
Found at i:32462206 original size:11 final size:11
Alignment explanation
Indices: 32462190--32462216 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
32462180 AATCTTGGTT
32462190 TATAAAATTTA
1 TATAAAATTTA
32462201 TATAAAATTTA
1 TATAAAATTTA
32462212 TATAA
1 TATAA
32462217 TTTTAACAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
TATAAAATTTA
Done.