Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 109 of 205
Found at i:32464973 original size:34 final size:31
Alignment explanation
Indices: 32464918--32464987 Score: 104
Period size: 34 Copynumber: 2.2 Consensus size: 31
32464908 CAATTCAATA
*
32464918 ACAGTTCAGTTCAGTTGGGCCTTAGCCTATT
1 ACAGTTCAGTTCAGTTGGGCCTTAGCCCATT
32464949 ACAGTATCAGTATCAGTGTGGGCCTTAGCCCATT
1 ACAGT-TCAGT-TCAGT-TGGGCCTTAGCCCATT
32464983 ACAGT
1 ACAGT
32464988 GATAGTAACA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
31 5 0.14
32 5 0.14
33 5 0.14
34 20 0.57
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (31 bp):
ACAGTTCAGTTCAGTTGGGCCTTAGCCCATT
Found at i:32468132 original size:27 final size:27
Alignment explanation
Indices: 32468100--32468167 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 27
32468090 CTAGAAAAAA
32468100 GAAGCCTTTGTGGC-GATCT-ATGAAATG
1 GAAGCCTTTGTGGCGGATCTCA--AAATG
*
32468127 GAAGCCTGTGTGGCGGATCTCAAAATG
1 GAAGCCTTTGTGGCGGATCTCAAAATG
* *
32468154 AAAGCCCTTGTGGC
1 GAAGCCTTTGTGGC
32468168 AATAATTTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
27 29 0.83
28 5 0.14
29 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (27 bp):
GAAGCCTTTGTGGCGGATCTCAAAATG
Found at i:32469914 original size:19 final size:19
Alignment explanation
Indices: 32469892--32469933 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
32469882 AAAAAAATTG
32469892 GAATTTT-TACAAATATTTT
1 GAATTTTATA-AAATATTTT
*
32469911 GAATTTTATAAATTATTTT
1 GAATTTTATAAAATATTTT
32469930 GAAT
1 GAAT
32469934 ATTTGAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.38, C:0.02, G:0.07, T:0.52
Consensus pattern (19 bp):
GAATTTTATAAAATATTTT
Found at i:32469945 original size:20 final size:19
Alignment explanation
Indices: 32469896--32469954 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 19
32469886 AAATTGGAAT
*
32469896 TTTTACAAA-TATTTTGAA
1 TTTTATAAATTATTTTGAA
32469914 TTTTATAAATTATTTTGAA
1 TTTTATAAATTATTTTGAA
*
32469933 TATTTGA-AAATTATTTTAAA
1 T-TTT-ATAAATTATTTTGAA
32469953 TT
1 TT
32469955 ATTTTGTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
18 8 0.22
19 11 0.31
20 16 0.44
21 1 0.03
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (19 bp):
TTTTATAAATTATTTTGAA
Found at i:32469955 original size:10 final size:10
Alignment explanation
Indices: 32469905--32469959 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
32469895 TTTTTACAAA
*
32469905 TATTTTGAAT
1 TATTTTAAAT
*
32469915 T-TTATAAAT
1 TATTTTAAAT
*
32469924 TATTTTGAA-
1 TATTTTAAAT
*
32469933 TATTTGAAAAT
1 TATTT-TAAAT
32469944 TATTTTAAAT
1 TATTTTAAAT
32469954 TATTTT
1 TATTTT
32469960 GTAATTTTTG
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
9 12 0.34
10 18 0.51
11 5 0.14
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.58
Consensus pattern (10 bp):
TATTTTAAAT
Found at i:32470131 original size:24 final size:23
Alignment explanation
Indices: 32470076--32470129 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
32470066 TCGAACTCAA
* *
32470076 AACTCGAATTACTTATTTGAATT
1 AACTCAAATAACTTATTTGAATT
*
32470099 TACTCAAATAACTTGATTTG-ATT
1 AACTCAAATAACTT-ATTTGAATT
32470122 AACTCAAA
1 AACTCAAA
32470130 ATTAATTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 21 0.81
24 5 0.19
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (23 bp):
AACTCAAATAACTTATTTGAATT
Found at i:32476458 original size:57 final size:57
Alignment explanation
Indices: 32476390--32476503 Score: 165
Period size: 57 Copynumber: 2.0 Consensus size: 57
32476380 GGCTTATGAC
* * **
32476390 AGAGTAAGTTGGGATTTCATTGGTGTGTGTCTCTTAGCTATCGGGATTCCCGAGTTA
1 AGAGTAAGTTGGGATTTCATTGATGTGTCTCTCAAAGCTATCGGGATTCCCGAGTTA
* * *
32476447 AGAGTAAGTTGGGATTTTATTGATGTGTCTTTCAAAGCTGTCGGGATTCCCGAGTTA
1 AGAGTAAGTTGGGATTTCATTGATGTGTCTCTCAAAGCTATCGGGATTCCCGAGTTA
32476504 CTCATAACTA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.21, C:0.13, G:0.29, T:0.37
Consensus pattern (57 bp):
AGAGTAAGTTGGGATTTCATTGATGTGTCTCTCAAAGCTATCGGGATTCCCGAGTTA
Found at i:32481224 original size:11 final size:11
Alignment explanation
Indices: 32481204--32481323 Score: 103
Period size: 11 Copynumber: 11.4 Consensus size: 11
32481194 TAAAAATTAA
32481204 AAAAAGTATTTT
1 AAAAA-TATTTT
32481216 AAAAATATTTT
1 AAAAATATTTT
32481227 AAAAATATTTT
1 AAAAATATTTT
32481238 --AAA-A-TTT
1 AAAAATATTTT
*
32481245 AAAAAAATTTT
1 AAAAATATTTT
32481256 AAAAAGTATTTT
1 AAAAA-TATTTT
*
32481268 TAAAATATTTT
1 AAAAATATTTT
*
32481279 --AAA-A-TTA
1 AAAAATATTTT
* **
32481286 AAAAATAATAA
1 AAAAATATTTT
32481297 AAAAAGTATTTT
1 AAAAA-TATTTT
32481309 AAAAATATTTT
1 AAAAATATTTT
32481320 AAAA
1 AAAA
32481324 TTAAAAAAAT
Statistics
Matches: 91, Mismatches: 7, Indels: 21
0.76 0.06 0.18
Matches are distributed among these distances:
7 5 0.05
8 2 0.02
9 12 0.13
10 2 0.02
11 48 0.53
12 22 0.24
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:32481254 original size:29 final size:31
Alignment explanation
Indices: 32481213--32481273 Score: 99
Period size: 29 Copynumber: 2.0 Consensus size: 31
32481203 AAAAAAGTAT
*
32481213 TTTAAAAATATTTTAAAAA-TA-TTTTAAAA
1 TTTAAAAAAATTTTAAAAAGTATTTTTAAAA
32481242 TTTAAAAAAATTTTAAAAAGTATTTTTAAAA
1 TTTAAAAAAATTTTAAAAAGTATTTTTAAAA
32481273 T
1 T
32481274 ATTTTAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 18 0.62
30 2 0.07
31 9 0.31
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (31 bp):
TTTAAAAAAATTTTAAAAAGTATTTTTAAAA
Found at i:32481266 original size:41 final size:41
Alignment explanation
Indices: 32481189--32481341 Score: 204
Period size: 41 Copynumber: 3.7 Consensus size: 41
32481179 ACCAAAAATT
*
32481189 TATTTTAAAAATTAAAAAAAGTATTTTAAAAA-TATTTTAAAAA
1 TATTTT-AAAATT-AAAAAA-TATTTAAAAAAGTATTTTAAAAA
* *
32481232 TATTTTAAAATTTAAAAAA-ATTTTAAAAAGTATTTTTAAAA
1 TATTTTAAAA-TTAAAAAATATTTAAAAAAGTATTTTAAAAA
* *
32481273 TATTTTAAAATTAAAAAATAATAAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATATTTAAAAAAGTATTTTAAAAA
32481314 TATTTTAAAATTAAAAAA-ATTTAAAAAA
1 TATTTTAAAATTAAAAAATATTTAAAAAA
32481342 TAAATATATT
Statistics
Matches: 100, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
40 26 0.26
41 56 0.56
42 10 0.10
43 8 0.08
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (41 bp):
TATTTTAAAATTAAAAAATATTTAAAAAAGTATTTTAAAAA
Found at i:32481329 original size:17 final size:17
Alignment explanation
Indices: 32481307--32481353 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
32481297 AAAAAGTATT
*
32481307 TTAAAAATATTTTAAAA
1 TTAAAAATATTTAAAAA
*
32481324 TTAAAAAAATTTAAAAA
1 TTAAAAATATTTAAAAA
* *
32481341 ATAAATATATTTA
1 TTAAAAATATTTA
32481354 TTATATCGGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAAAAATATTTAAAAA
Found at i:32489564 original size:17 final size:17
Alignment explanation
Indices: 32489542--32489584 Score: 70
Period size: 17 Copynumber: 2.5 Consensus size: 17
32489532 AATTTATAGC
32489542 TAAATATATATTA-ATAA
1 TAAATATA-ATTATATAA
32489559 TAAATATAATTATATAA
1 TAAATATAATTATATAA
32489576 TAAATATAA
1 TAAATATAA
32489585 ATTTAATTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 4 0.16
17 21 0.84
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAATATAATTATATAA
Found at i:32494991 original size:120 final size:120
Alignment explanation
Indices: 32494778--32495017 Score: 410
Period size: 120 Copynumber: 2.0 Consensus size: 120
32494768 AAATTTGAAA
* *
32494778 TTAAGTTCAACAAGGAGAATTTTTAAAGGAATTATAAGGACTTATTGATAGATATCATTAAAGTA
1 TTAAGTTCAACAAAGAGAATTTTTAAAGGAATTATAAGGACTTATTGATAGATATCAATAAAGTA
32494843 AATTTTGGATGCGACATTGCAAAAAAGGGACTAAATTGTAAAATAGGAAATGTAT
66 AATTTTGGATGCGACATTGCAAAAAAGGGACTAAATTGTAAAATAGGAAATGTAT
32494898 TTAAGTTCAACAAAGAGAATTTTTAAAGGAATTATAAGGACTTATTGAT-GTATATCAATAAAGT
1 TTAAGTTCAACAAAGAGAATTTTTAAAGGAATTATAAGGACTTATTGATAG-ATATCAATAAAGT
* * * *
32494962 CAATTTTGGATGTGGCATTGCAAAAAAGGGACTAAATTGTAAAATAGGAACTGTAT
65 AAATTTTGGATGCGACATTGCAAAAAAGGGACTAAATTGTAAAATAGGAAATGTAT
32495018 GAGGACTATA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
119 1 0.01
120 112 0.99
ACGTcount: A:0.42, C:0.07, G:0.19, T:0.31
Consensus pattern (120 bp):
TTAAGTTCAACAAAGAGAATTTTTAAAGGAATTATAAGGACTTATTGATAGATATCAATAAAGTA
AATTTTGGATGCGACATTGCAAAAAAGGGACTAAATTGTAAAATAGGAAATGTAT
Found at i:32499583 original size:50 final size:50
Alignment explanation
Indices: 32499342--32499583 Score: 249
Period size: 50 Copynumber: 4.9 Consensus size: 50
32499332 GATAATAACA
* * * *
32499342 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA--TGTTTTCT-GTAC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCG--G
* * * * ** * *
32499391 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGG
* * *
32499441 TGCCCATGCCATGTCCCAGACATGGTCTTACGA-GGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTTATCTCGG
* * *
32499491 TGCGAACGCCATGTCCCAGACATGGTCTTATATGGAACCTCTTATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGG
* *
32499541 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGTCCTCTT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTT
32499584 TACCCAAATG
Statistics
Matches: 161, Mismatches: 27, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
49 34 0.21
50 121 0.75
51 5 0.03
52 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGG
Found at i:32499954 original size:30 final size:30
Alignment explanation
Indices: 32499920--32499977 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
32499910 CCTTGACTCG
32499920 AACTTTGGAAAAATTACAATTTTGCCCCTA
1 AACTTTGGAAAAATTACAATTTTGCCCCTA
* * * *
32499950 AACTTTTGCATAATTACACTTTTGCCCC
1 AACTTTGGAAAAATTACAATTTTGCCCC
32499978 AAAGCTCGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (30 bp):
AACTTTGGAAAAATTACAATTTTGCCCCTA
Found at i:32504861 original size:27 final size:26
Alignment explanation
Indices: 32504831--32505018 Score: 198
Period size: 27 Copynumber: 7.0 Consensus size: 26
32504821 CTCCATTGAC
**
32504831 CGAAATACCCTTATAGGGTAAAATGA
1 CGAAATACCCCCATAGGGTAAAATGA
*
32504857 TCGAAATACCCTCATAGGGTAAAATGA
1 -CGAAATACCCCCATAGGGTAAAATGA
* **
32504884 TCCAAATACCCTTATA-GGTAAAATGA
1 -CGAAATACCCCCATAGGGTAAAATGA
* *
32504910 CTGAAATACCCCTATAGGGTAGAATGA
1 C-GAAATACCCCCATAGGGTAAAATGA
*
32504937 CCGAAATACCCCAATAGGGTAAAATGA
1 -CGAAATACCCCCATAGGGTAAAATGA
*
32504964 CTAAAATACCCCCATAGGGTAAAATGAA
1 C-GAAATACCCCCATAGGGTAAAATG-A
* * *
32504992 CAAAATACCACCATTGGGTAAAATGA
1 CGAAATACCCCCATAGGGTAAAATGA
32505018 C
1 C
32505019 TGTTATACCC
Statistics
Matches: 144, Mismatches: 12, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.01
26 25 0.17
27 115 0.80
28 3 0.02
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.21
Consensus pattern (26 bp):
CGAAATACCCCCATAGGGTAAAATGA
Found at i:32504896 original size:54 final size:52
Alignment explanation
Indices: 32504827--32505020 Score: 223
Period size: 54 Copynumber: 3.6 Consensus size: 52
32504817 TGCTCTCCAT
32504827 TGACCGAAATACCCTTATAGGGTAAAATGA-TCGAAATACCCTCATAGGGTAAAA
1 TGACC-AAATACCCTTATAGGGTAAAATGACT-GAAATACCC-CATAGGGTAAAA
*
32504881 TGATCCAAATACCCTTATA-GGTAAAATGACTGAAATACCCCTATAGGGTAGAA
1 TGA-CCAAATACCCTTATAGGGTAAAATGACTGAAATACCCC-ATAGGGTAAAA
** *
32504934 TGACCGAAATACCCCAATAGGGTAAAATGACTAAAATACCCCCATAGGGTAAAA
1 TGACC-AAATACCCTTATAGGGTAAAATGACTGAAATA-CCCCATAGGGTAAAA
* * *
32504988 TGAACAAAATACCAC-CATTGGGTAAAATGACTG
1 TG-ACCAAATACC-CTTATAGGGTAAAATGACTG
32505021 TTATACCCTT
Statistics
Matches: 123, Mismatches: 9, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
52 3 0.02
53 43 0.35
54 68 0.55
55 9 0.07
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.21
Consensus pattern (52 bp):
TGACCAAATACCCTTATAGGGTAAAATGACTGAAATACCCCATAGGGTAAAA
Found at i:32504971 original size:80 final size:81
Alignment explanation
Indices: 32504827--32505018 Score: 239
Period size: 80 Copynumber: 2.4 Consensus size: 81
32504817 TGCTCTCCAT
* * *
32504827 TGACCGAAATACCCTTATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGATCCAAATA
1 TGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGATCAAAATA
**
32504892 CCCTTATA-GGTAAAA
66 CCCCCATAGGGTAAAA
* *
32504907 TGACTGAAATACCCCTATAGGGTAGAATGACCGAAATACCC-CAATAGGGTAAAATGA-CTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCTC-ATAGGGTAAAATGATC-AAAA
32504970 TACCCCCATAGGGTAAAA
64 TACCCCCATAGGGTAAAA
* * *
32504988 TGAACAAAATACCACC-ATTGGGTAAAATGAC
1 TGACCGAAATACC-CCTATAGGGTAAAATGAC
32505019 TGTTATACCC
Statistics
Matches: 96, Mismatches: 12, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
79 2 0.02
80 62 0.65
81 30 0.31
82 2 0.02
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.21
Consensus pattern (81 bp):
TGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGATCAAAATA
CCCCCATAGGGTAAAA
Found at i:32507653 original size:312 final size:312
Alignment explanation
Indices: 32507075--32507698 Score: 1203
Period size: 312 Copynumber: 2.0 Consensus size: 312
32507065 ATGATGGTGC
32507075 ATTGTGACCGATCACATGGAAGCTCAAATTCATTTTATGTACGTTCCTTAAAGGTGAAGATTGTG
1 ATTGTGACCGATCACATGGAAGCTCAAATTCATTTTATGTACGTTCCTTAAAGGTGAAGATTGTG
32507140 GTTGTTCAATTCTGCTGATACAAGAATTAATCAAGAGGAACGAATATGTCCATTTATGCATTCCA
66 GTTGTTCAATTCTGCTGATACAAGAATTAATCAAGAGGAACGAATATGTCCATTTATGCATTCCA
32507205 AAGGGAATTGTATGGGATTTAATGTCATGCCTTGAATCTCCAAGATACATGCTCCAAGTTCATGA
131 AAGGGAATTGTATGGGATTTAATGTCATGCCTTGAATCTCCAAGATACATGCTCCAAGTTCATGA
* * * * *
32507270 CTAATAAGTTCATTAATTCAGCCCATGTATCGGCACATACATGCATCAAAAGAAGGTGTTGAATT
196 CTAATAAGTTCATTAATTCAGCCCATGTACCAGCACATACATGCATCAAAAGAAGGGGCTGAATC
32507335 AGTTAAATGCCAATTGCCCATCTATGTGCTCAAGACGCCATTATGATTCAAT
261 AGTTAAATGCCAATTGCCCATCTATGTGCTCAAGACGCCATTATGATTCAAT
32507387 ATTGTGACCGATCACATGGAAGCTCAAATTCATTTTATGTACGTTCCTTAAAGGTGAAGATTGTG
1 ATTGTGACCGATCACATGGAAGCTCAAATTCATTTTATGTACGTTCCTTAAAGGTGAAGATTGTG
32507452 GTTGTTCAATTCTGCTGATACAAGAATTAATCAAGAGGAACGAATATGTCCATTTATGCATTCCA
66 GTTGTTCAATTCTGCTGATACAAGAATTAATCAAGAGGAACGAATATGTCCATTTATGCATTCCA
32507517 AAGGGAATTGTATGGGATTTAATGTCATGCCTTGAATCTCCAAGATACATGCTCCAAGTTCATGA
131 AAGGGAATTGTATGGGATTTAATGTCATGCCTTGAATCTCCAAGATACATGCTCCAAGTTCATGA
32507582 CTAATAAGTTCATTAATTCAGCCCATGTACCAGCACATACATGCATCAAAAGAAGGGGCTGAATC
196 CTAATAAGTTCATTAATTCAGCCCATGTACCAGCACATACATGCATCAAAAGAAGGGGCTGAATC
32507647 AGTTAAATGCCAATTGCCCATCTATGTGCTCAAGACGCCATTATGATTCAAT
261 AGTTAAATGCCAATTGCCCATCTATGTGCTCAAGACGCCATTATGATTCAAT
32507699 TAAAGCATAT
Statistics
Matches: 307, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
312 307 1.00
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (312 bp):
ATTGTGACCGATCACATGGAAGCTCAAATTCATTTTATGTACGTTCCTTAAAGGTGAAGATTGTG
GTTGTTCAATTCTGCTGATACAAGAATTAATCAAGAGGAACGAATATGTCCATTTATGCATTCCA
AAGGGAATTGTATGGGATTTAATGTCATGCCTTGAATCTCCAAGATACATGCTCCAAGTTCATGA
CTAATAAGTTCATTAATTCAGCCCATGTACCAGCACATACATGCATCAAAAGAAGGGGCTGAATC
AGTTAAATGCCAATTGCCCATCTATGTGCTCAAGACGCCATTATGATTCAAT
Found at i:32516023 original size:2 final size:2
Alignment explanation
Indices: 32516016--32516047 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
32516006 TTGGACCCTT
32516016 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
32516048 CAAAATTCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:32523077 original size:13 final size:12
Alignment explanation
Indices: 32523045--32523078 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
32523035 GTTTCATATG
32523045 CATAAT-ATAAA
1 CATAATCATAAA
32523056 CATAATCATAAA
1 CATAATCATAAA
32523068 CATCAATCATA
1 CAT-AATCATA
32523079 TCCAAAAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 6 0.29
12 8 0.38
13 7 0.33
ACGTcount: A:0.56, C:0.18, G:0.00, T:0.26
Consensus pattern (12 bp):
CATAATCATAAA
Found at i:32524765 original size:20 final size:20
Alignment explanation
Indices: 32524723--32524765 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
32524713 TTTTCTTTTC
*
32524723 TTAATTTTATGTTTTATTTA
1 TTAATTTTATGTTTTATTAA
32524743 TTAATTTTATGTTATT-TTAA
1 TTAATTTTATGTT-TTATTAA
32524763 TTA
1 TTA
32524766 CAAACTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (20 bp):
TTAATTTTATGTTTTATTAA
Found at i:32557380 original size:20 final size:19
Alignment explanation
Indices: 32557355--32557392 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
32557345 AAGAGAAAGG
32557355 GAAAATATGAATAAATATAT
1 GAAAATATGAAT-AATATAT
*
32557375 GAAAATGTGAATAATATA
1 GAAAATATGAATAATATA
32557393 CTTTATGGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (19 bp):
GAAAATATGAATAATATAT
Found at i:32565348 original size:30 final size:30
Alignment explanation
Indices: 32565314--32565424 Score: 204
Period size: 30 Copynumber: 3.7 Consensus size: 30
32565304 CCTGACCACA
*
32565314 CCTGACCACACTGCCGTGTGAGGTACACGG
1 CCTGACCACACTGCCGTGTGAGGCACACGG
*
32565344 CCTGACCACACTGCCGTGTGAGGCACACAG
1 CCTGACCACACTGCCGTGTGAGGCACACGG
32565374 CCTGACCACACTGCCGTGTGAGGCACACGG
1 CCTGACCACACTGCCGTGTGAGGCACACGG
32565404 CCTGACCACACTGCCGTGTGA
1 CCTGACCACACTGCCGTGTGA
32565425 CCCCTGATAG
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 78 1.00
ACGTcount: A:0.21, C:0.36, G:0.28, T:0.15
Consensus pattern (30 bp):
CCTGACCACACTGCCGTGTGAGGCACACGG
Found at i:32575157 original size:342 final size:342
Alignment explanation
Indices: 32574522--32575157 Score: 862
Period size: 342 Copynumber: 1.9 Consensus size: 342
32574512 GGACTTCATT
* * * * *
32574522 AGTGGGTTGCCCTTGACACCCACTAAGAAGGATTCTGTTCGGGTCATCGTGTATCGATTGACCAA
1 AGTGGGTTGCCCTTGACACCCACTAAGAAGGATTATGTTCGAGTCATCATGGATCAATTGACCAA
* * * * * * * *
32574587 GTCTGCTCATTTTATTCTAGTTCGGATAGACTACTCTTTGGAAAAACTAGCGAAGCTCTACATCT
66 GTCTACTCATCTTATTCCAGTTCGGACAGACTACTCTCTAGAAAAACTAGCAAACCTCTACATCT
* *
32574652 CTGAGATTGTAAGACTGCATGAGGTTCCTATTTGGATAATTTGTAATGTAAATCCTCGTTTCACT
131 CCGAGATTGTAAGACTGCATGAGGTTCCTATTTGGATAATTTCTAATGTAAATCCTCGTTTCACT
* ** * * *
32574717 TCTCGATTTTGGAAGAAATTACATGAGGCTCTGGGTTCGAGATTGGACTTCAGTACTGCGTTTCG
196 TCTCGATTCTGGAAGAAATTACACAAGGCTCTAGGTTCAAGATTGGACTTCAGTACTGCGTTCCG
* ** *
32574782 TCCTCAGACTGATGGTCAATCCGATAAGGTGATTTAGTTACTGGAGGATATGCTTTGGAGTTGAG
261 TCCTCAAACCAATGGTCAATCCGAGAAGGTGATTTAGTTACTGGAGGATATGCTTTGGAGTTGAG
32574847 TGATGATGGGCTTTGTC
326 TGATGATGGGCTTTGTC
*
32574864 AGTGGGTTGCCCTTGACACCCACTAAGAAGTATTATGTTTC-AGTCATCATGGATCAATTGACCA
1 AGTGGGTTGCCCTTGACACCCACTAAGAAGGATTATG-TTCGAGTCATCATGGATCAATTGACCA
* * * * ** *
32574928 AGTCTACTCATCTTATTCCGGTTCGGACGGACTACTCTCTATAGAAGTTAGCAAACCTCTATATC
65 AGTCTACTCATCTTATTCCAGTTCGGACAGACTACTCTCTAGAAAAACTAGCAAACCTCTACATC
* * * * * *
32574993 TCCGAGATTGTAAGACTGCATGGGGTTCCTATTTTGATTATTTCTGATAG-AGATCCTCGTTTTA
130 TCCGAGATTGTAAGACTGCATGAGGTTCCTATTTGGATAATTTCTAAT-GTAAATCCTCGTTTCA
32575057 CTTCTCGATTCTGGAAGAAATTACACAAGGCTCTAGGTTCAAGATTGGACTTCAGTACTGCGTTC
194 CTTCTCGATTCTGGAAGAAATTACACAAGGCTCTAGGTTCAAGATTGGACTTCAGTACTGCGTTC
* * *
32575122 CTTCCTCAAACCAATGGTCAATCTGAGAGGGTGATT
259 CGTCCTCAAACCAATGGTCAATCCGAGAAGGTGATT
32575158 CAAATACAGG
Statistics
Matches: 250, Mismatches: 42, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
342 246 0.98
343 4 0.02
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (342 bp):
AGTGGGTTGCCCTTGACACCCACTAAGAAGGATTATGTTCGAGTCATCATGGATCAATTGACCAA
GTCTACTCATCTTATTCCAGTTCGGACAGACTACTCTCTAGAAAAACTAGCAAACCTCTACATCT
CCGAGATTGTAAGACTGCATGAGGTTCCTATTTGGATAATTTCTAATGTAAATCCTCGTTTCACT
TCTCGATTCTGGAAGAAATTACACAAGGCTCTAGGTTCAAGATTGGACTTCAGTACTGCGTTCCG
TCCTCAAACCAATGGTCAATCCGAGAAGGTGATTTAGTTACTGGAGGATATGCTTTGGAGTTGAG
TGATGATGGGCTTTGTC
Found at i:32582568 original size:8 final size:8
Alignment explanation
Indices: 32582555--32582585 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
32582545 GAATGAGTGA
32582555 GGGATGAT
1 GGGATGAT
32582563 GGGATGAT
1 GGGATGAT
32582571 GGGATGA-
1 GGGATGAT
32582578 GGGATGAT
1 GGGATGAT
32582586 TGAAAAAGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.32
8 15 0.68
ACGTcount: A:0.26, C:0.00, G:0.52, T:0.23
Consensus pattern (8 bp):
GGGATGAT
Found at i:32582568 original size:23 final size:23
Alignment explanation
Indices: 32582542--32582585 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
32582532 AGAAGAGAAT
32582542 GATGAATGAG-TGAGGGATGATGG
1 GATG-ATGAGATGAGGGATGATGG
*
32582565 GATGATGGGATGAGGGATGAT
1 GATGATGAGATGAGGGATGAT
32582586 TGAAAAAGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.30, C:0.00, G:0.48, T:0.23
Consensus pattern (23 bp):
GATGATGAGATGAGGGATGATGG
Found at i:32582583 original size:15 final size:16
Alignment explanation
Indices: 32582555--32582585 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
32582545 GAATGAGTGA
32582555 GGGATGATGGGATGAT
1 GGGATGATGGGATGAT
32582571 GGGATGA-GGGATGAT
1 GGGATGATGGGATGAT
32582586 TGAAAAAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.26, C:0.00, G:0.52, T:0.23
Consensus pattern (16 bp):
GGGATGATGGGATGAT
Found at i:32590139 original size:20 final size:19
Alignment explanation
Indices: 32590114--32590153 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
32590104 TAAGAGCCAA
32590114 AATTATATGATATTTAGAAT
1 AATTATATGAT-TTTAGAAT
* *
32590134 AATTATTTGATTTTATAAT
1 AATTATATGATTTTAGAAT
32590153 A
1 A
32590154 TTAAAATTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.50
Consensus pattern (19 bp):
AATTATATGATTTTAGAAT
Found at i:32595015 original size:27 final size:25
Alignment explanation
Indices: 32594966--32595032 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
32594956 TCCGACCCAT
* *
32594966 AGCTCGTGTGAGCAGGCCCATTTTCAC
1 AGCTCGTGTGAGCATG-CCAATTT-AC
* *
32594993 AGCTCGTGTGAGCATTCTAATTTAC
1 AGCTCGTGTGAGCATGCCAATTTAC
*
32595018 AGCTCGTTTGAGCAT
1 AGCTCGTGTGAGCAT
32595033 ACATGTACAG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
25 16 0.46
26 5 0.14
27 14 0.40
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.31
Consensus pattern (25 bp):
AGCTCGTGTGAGCATGCCAATTTAC
Found at i:32597417 original size:20 final size:20
Alignment explanation
Indices: 32597384--32597421 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
32597374 GTATTCCAAC
* *
32597384 CGAGATTGCTATGTGTAAAT
1 CGAGACTGCCATGTGTAAAT
32597404 CGAGACTGCCATGTGTAA
1 CGAGACTGCCATGTGTAA
32597422 GAGGTTCGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (20 bp):
CGAGACTGCCATGTGTAAAT
Found at i:32607697 original size:34 final size:33
Alignment explanation
Indices: 32607621--32607703 Score: 118
Period size: 34 Copynumber: 2.5 Consensus size: 33
32607611 CAATTCAATA
32607621 ACAGT-TCAGT-TCAGTTGGGCCTTAGCCCATT
1 ACAGTATCAGTATCAGTTGGGCCTTAGCCCATT
32607652 ACAGTATCAGTATCAGTGTGGGCCTTAGCCCATT
1 ACAGTATCAGTATCAGT-TGGGCCTTAGCCCATT
*
32607686 ACAGTGA-CAGTAACAGTT
1 ACAGT-ATCAGTATCAGTT
32607704 CGGACATGCA
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
31 5 0.11
32 5 0.11
33 6 0.13
34 30 0.64
35 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (33 bp):
ACAGTATCAGTATCAGTTGGGCCTTAGCCCATT
Found at i:32614362 original size:29 final size:29
Alignment explanation
Indices: 32614202--32614369 Score: 160
Period size: 29 Copynumber: 5.8 Consensus size: 29
32614192 AGTTTGAAAC
* * * *
32614202 AAGGCATTCCTTTAATAGAGATGGCCAAA
1 AAGGCATTCTTTTAACAGAGATAGCCATA
* *
32614231 AAGGCA-TCTTTTTAACAGAGATAGCAACA
1 AAGGCATTC-TTTTAACAGAGATAGCCATA
* * *
32614260 AATGAATTCTTTTAATAGAGATAGCCATA
1 AAGGCATTCTTTTAACAGAGATAGCCATA
* * * * *
32614289 AAGGCCTCCTTTGAATAGAGGTAGCC-TCA
1 AAGGCATTCTTTTAACAGAGATAGCCAT-A
32614318 AAGGCATTCTTTTAACAGAGATAGCCATA
1 AAGGCATTCTTTTAACAGAGATAGCCATA
* *
32614347 AAGACATTCTTTTAACAAAGATA
1 AAGGCATTCTTTTAACAGAGATA
32614370 CCCACTGATG
Statistics
Matches: 112, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
28 3 0.03
29 106 0.95
30 3 0.03
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (29 bp):
AAGGCATTCTTTTAACAGAGATAGCCATA
Found at i:32619005 original size:10 final size:10
Alignment explanation
Indices: 32618992--32619029 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
32618982 AAGAAGCTAA
32618992 ATTGAGCTCG
1 ATTGAGCTCG
32619002 ATTGAGCT-G
1 ATTGAGCTCG
32619011 ACTTGAGCTCG
1 A-TTGAGCTCG
*
32619022 AGTGAGCT
1 ATTGAGCT
32619030 GGAAACGAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (10 bp):
ATTGAGCTCG
Found at i:32619016 original size:20 final size:20
Alignment explanation
Indices: 32618993--32619030 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
32618983 AGAAGCTAAA
*
32618993 TTGAGCTCGATTGAGCTGAC
1 TTGAGCTCGAGTGAGCTGAC
32619013 TTGAGCTCGAGTGAGCTG
1 TTGAGCTCGAGTGAGCTG
32619031 GAAACGAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.34, T:0.29
Consensus pattern (20 bp):
TTGAGCTCGAGTGAGCTGAC
Found at i:32619197 original size:29 final size:29
Alignment explanation
Indices: 32619147--32619258 Score: 118
Period size: 29 Copynumber: 3.9 Consensus size: 29
32619137 GCCGTATCAC
* * * *
32619147 CCACAAAGGATTCCTAATAACAAAGTTCG
1 CCACAAAGGCTTCTTTATAACAGAGTTCG
*
32619176 CCACAAAGGCTTCTTTACAACAGAGTTCG
1 CCACAAAGGCTTCTTTATAACAGAGTTCG
* * * * *
32619205 CCACAGAGGCTTTTTTATAATAGAGATCA
1 CCACAAAGGCTTCTTTATAACAGAGTTCG
32619234 CCACAAAGGC-TCTTTTATAACAGAG
1 CCACAAAGGCTTC-TTTATAACAGAG
32619259 ATCACAGCAA
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
28 1 0.01
29 67 0.99
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (29 bp):
CCACAAAGGCTTCTTTATAACAGAGTTCG
Found at i:32619241 original size:58 final size:59
Alignment explanation
Indices: 32619176--32619310 Score: 150
Period size: 58 Copynumber: 2.3 Consensus size: 59
32619166 ACAAAGTTCG
* * * * *
32619176 CCACAAAGGCTTC-TTTACAACAGAGTTCGCCA-CAGAGGCTTTTTTATAATAGAGATCA
1 CCACAAAGGCTTCTTTTACAACAGAGATC-ACAGCAAAGGATTTCTTATAATAGAGATCA
* * *
32619234 CCACAAAGGC-TCTTTTATAACAGAGATCACAGCAAAGGATTTCTTATAGTAGAGATTA
1 CCACAAAGGCTTCTTTTACAACAGAGATCACAGCAAAGGATTTCTTATAATAGAGATCA
*
32619292 CCACAAACGCTTCATTTTA
1 CCACAAAGGCTTC-TTTTA
32619311 GAGATAGCCA
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
57 4 0.06
58 53 0.83
59 2 0.03
60 5 0.08
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (59 bp):
CCACAAAGGCTTCTTTTACAACAGAGATCACAGCAAAGGATTTCTTATAATAGAGATCA
Found at i:32619259 original size:29 final size:28
Alignment explanation
Indices: 32619176--32619303 Score: 114
Period size: 29 Copynumber: 4.4 Consensus size: 28
32619166 ACAAAGTTCG
* * *
32619176 CCACAAAGGCTTCTTTACAACAGAGTTCG
1 CCACAAAGGCTT-TTTATAACAGAGATCA
* *
32619205 CCACAGAGGCTTTTTTATAATAGAGATCA
1 CCACAAAGGC-TTTTTATAACAGAGATCA
32619234 CCACAAAGGCTCTTTTATAACAGAGATCA
1 CCACAAAGGCT-TTTTATAACAGAGATCA
* ** *
32619263 -CAGCAAAGGATTTCTTATAGTAGAGATTA
1 CCA-CAAAGGCTTT-TTATAACAGAGATCA
*
32619292 CCACAAACGCTT
1 CCACAAAGGCTT
32619304 CATTTTAGAG
Statistics
Matches: 81, Mismatches: 13, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
28 5 0.06
29 72 0.89
30 4 0.05
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (28 bp):
CCACAAAGGCTTTTTATAACAGAGATCA
Found at i:32619821 original size:17 final size:17
Alignment explanation
Indices: 32619796--32619829 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
32619786 TAGTTAGTGG
*
32619796 GATAATGTGGGGGTTAA
1 GATAATGTGGGAGTTAA
*
32619813 GATATTGTGGGAGTTAA
1 GATAATGTGGGAGTTAA
32619830 TTTAATTTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.38, T:0.32
Consensus pattern (17 bp):
GATAATGTGGGAGTTAA
Found at i:32627572 original size:38 final size:38
Alignment explanation
Indices: 32627492--32627576 Score: 100
Period size: 38 Copynumber: 2.2 Consensus size: 38
32627482 GCAATCCTTG
* * * *
32627492 TTATAATTATTGCAATTATAATTTAGGATCGAATATTT
1 TTATAATTACTGCAATTATAATTTAGGATCAAACATTA
* *
32627530 TTATAATTACTGTAATTATAATTTTTGG-TCAAACATTA
1 TTATAATTACTGCAATTATAA-TTTAGGATCAAACATTA
32627568 TTATAATTA
1 TTATAATTA
32627577 TTATATTTGG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
38 35 0.88
39 5 0.12
ACGTcount: A:0.38, C:0.06, G:0.08, T:0.48
Consensus pattern (38 bp):
TTATAATTACTGCAATTATAATTTAGGATCAAACATTA
Found at i:32630016 original size:19 final size:18
Alignment explanation
Indices: 32629992--32630027 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
32629982 CTCATGCTGA
32629992 TTCTTCTCATCTCATTTTC
1 TTCTTCTC-TCTCATTTTC
*
32630011 TTCTTCTCTCTCCTTTT
1 TTCTTCTCTCTCATTTT
32630028 ATTGGGTAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.06, C:0.33, G:0.00, T:0.61
Consensus pattern (18 bp):
TTCTTCTCTCTCATTTTC
Found at i:32633737 original size:21 final size:21
Alignment explanation
Indices: 32633711--32633752 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
32633701 ATTGTTTTAG
32633711 GCTTGAGACA-TATTCCCTTAA
1 GCTTGA-ACAGTATTCCCTTAA
*
32633732 GCTTGAACAGTATTCTCTTAA
1 GCTTGAACAGTATTCCCTTAA
32633753 ATTGGTATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (21 bp):
GCTTGAACAGTATTCCCTTAA
Found at i:32635385 original size:60 final size:60
Alignment explanation
Indices: 32635292--32635411 Score: 204
Period size: 60 Copynumber: 2.0 Consensus size: 60
32635282 AAAGCTTTTG
* *
32635292 AATTTGTTTTCCTCTAGGTTTGATCTTTGTGAAATTAGGTTTCATTAATTCTCAAAATTT
1 AATTTGTTCTCCTCTAGGTTTGATCTTAGTGAAATTAGGTTTCATTAATTCTCAAAATTT
* *
32635352 AATTTGTTCTCCTCTAGGTTTGGTCTTAGTGAAATTAGGTTTCATTAATTCTCAGAATTT
1 AATTTGTTCTCCTCTAGGTTTGATCTTAGTGAAATTAGGTTTCATTAATTCTCAAAATTT
32635412 GAGTTTGTAT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.24, C:0.12, G:0.15, T:0.48
Consensus pattern (60 bp):
AATTTGTTCTCCTCTAGGTTTGATCTTAGTGAAATTAGGTTTCATTAATTCTCAAAATTT
Found at i:32649649 original size:26 final size:26
Alignment explanation
Indices: 32649616--32649676 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
32649606 CCTATAAGTG
32649616 TTCTAAAACTGATACAT-CTATGATA
1 TTCTAAAACTGATACATGCTATGATA
* *
32649641 TTCTGAAAA-TGATATATGTTATGATA
1 TTCT-AAAACTGATACATGCTATGATA
32649667 TTCTAAAACT
1 TTCTAAAACT
32649677 ACTACAGGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 15 0.48
26 16 0.52
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.39
Consensus pattern (26 bp):
TTCTAAAACTGATACATGCTATGATA
Found at i:32662284 original size:23 final size:24
Alignment explanation
Indices: 32662258--32662302 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
32662248 TATAATTATA
*
32662258 TATAT-TATATAATAAGACCCATG
1 TATATGTACATAATAAGACCCATG
*
32662281 TATATGTACATAGTAAGACCCA
1 TATATGTACATAATAAGACCCA
32662303 CGCATAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.31
Consensus pattern (24 bp):
TATATGTACATAATAAGACCCATG
Found at i:32663638 original size:3 final size:3
Alignment explanation
Indices: 32663575--32663625 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
32663565 AATTAGTCTC
32663575 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
32663623 TAT
1 TAT
32663626 GCCCCGATTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:32668064 original size:13 final size:13
Alignment explanation
Indices: 32668046--32668070 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32668036 ATTTACGATC
32668046 TCAAGTTCAATTT
1 TCAAGTTCAATTT
32668059 TCAAGTTCAATT
1 TCAAGTTCAATT
32668071 ACCCATTGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (13 bp):
TCAAGTTCAATTT
Found at i:32679810 original size:30 final size:30
Alignment explanation
Indices: 32679718--32679819 Score: 113
Period size: 30 Copynumber: 3.4 Consensus size: 30
32679708 GGCTATCGAT
*
32679718 TATG-AAAGGGATGGGTGATGACCATC-AAC
1 TATGAAAAGGGAT-GGTGACGACCATCGAAC
*
32679747 AATGAAAAGGGATGGTGACGACCATCGAAC
1 TATGAAAAGGGATGGTGACGACCATCGAAC
* *
32679777 TATGAAAAGGGATGGCT-TCGACTATC-AATC
1 TATGAAAAGGGATGG-TGACGACCATCGAA-C
32679807 TATGAAAAGGGAT
1 TATGAAAAGGGAT
32679820 AACTTTGGCT
Statistics
Matches: 64, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
29 17 0.27
30 46 0.72
31 1 0.02
ACGTcount: A:0.37, C:0.14, G:0.28, T:0.21
Consensus pattern (30 bp):
TATGAAAAGGGATGGTGACGACCATCGAAC
Found at i:32679832 original size:30 final size:31
Alignment explanation
Indices: 32679776--32679842 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
32679766 GACCATCGAA
**
32679776 CTATGAAAAGGGATGGCTTCGACTATC-AAT
1 CTATGAAAAGGGATAACTTCGACTATCAAAT
* *
32679806 CTATGAAAAGGGATAACTTTGGCTATCAAAT
1 CTATGAAAAGGGATAACTTCGACTATCAAAT
32679837 -TATGAA
1 CTATGAA
32679843 TGTACATATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 29 0.91
31 3 0.09
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.28
Consensus pattern (31 bp):
CTATGAAAAGGGATAACTTCGACTATCAAAT
Found at i:32683255 original size:25 final size:25
Alignment explanation
Indices: 32683227--32683274 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
32683217 CAAGCAAGTC
32683227 ATATCAAGAA-GCTCACAAAGAGCCT
1 ATATC-AGAACGCTCACAAAGAGCCT
*
32683252 ATATCAGAACGCTCATAAAGAGC
1 ATATCAGAACGCTCACAAAGAGC
32683275 TGCGATATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.44, C:0.23, G:0.17, T:0.17
Consensus pattern (25 bp):
ATATCAGAACGCTCACAAAGAGCCT
Found at i:32690863 original size:32 final size:32
Alignment explanation
Indices: 32690803--32690863 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
32690793 CCTTTTTATT
* * *
32690803 AAATTTGGTCATCAACCTTTTTACAAATAGTC
1 AAATTTGATCATCAACCTTTTAAAAAATAGTC
*
32690835 AAATTTGATCATTAACCTTTTAAAAAATA
1 AAATTTGATCATCAACCTTTTAAAAAATA
32690864 ATAAAAATGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.38
Consensus pattern (32 bp):
AAATTTGATCATCAACCTTTTAAAAAATAGTC
Found at i:32691948 original size:42 final size:42
Alignment explanation
Indices: 32691879--32691958 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
32691869 CTAAATCCTA
* ** *
32691879 AACCTCGAACCCTTAACCATGCGCATTGAATCCCAAACCCCG
1 AACCCCGAACCCTTAACCATGAACATTGAACCCCAAACCCCG
*
32691921 AACCCCGAACCCTTAACCCTGAACATTGAACCCCAAAC
1 AACCCCGAACCCTTAACCATGAACATTGAACCCCAAAC
32691959 TCTTGAATCC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.34, C:0.41, G:0.10, T:0.15
Consensus pattern (42 bp):
AACCCCGAACCCTTAACCATGAACATTGAACCCCAAACCCCG
Found at i:32691977 original size:29 final size:28
Alignment explanation
Indices: 32691920--32691988 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 28
32691910 CCCAAACCCC
*
32691920 GAACCCCGAACCCTTAACCCTGAACATT
1 GAACCCCAAACCCTTAACCCTGAACATT
* * *
32691948 GAACCCCAAACTCTTGAATCCTGAATATT
1 GAACCCCAAACCCTT-AACCCTGAACATT
*
32691977 GAACCCCGAACC
1 GAACCCCAAACC
32691989 ACAAACCCAA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
28 13 0.38
29 21 0.62
ACGTcount: A:0.33, C:0.36, G:0.12, T:0.19
Consensus pattern (28 bp):
GAACCCCAAACCCTTAACCCTGAACATT
Found at i:32696528 original size:42 final size:42
Alignment explanation
Indices: 32696481--32696578 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 42
32696471 GTCCTCACCC
*** *
32696481 GTGTAACTCACTGAGTAGGGTCACACGGCCGTGT-CGTAGGTT
1 GTGTAACTCACTGAGTAGCCACACACGGCCGTGTAC-TAGGCT
* * *
32696523 GTGTAACTCTCTGAGTTGCCACACATGGCCGTGTACTAGGCT
1 GTGTAACTCACTGAGTAGCCACACACGGCCGTGTACTAGGCT
32696565 GTGTAACTCACTGA
1 GTGTAACTCACTGA
32696579 CTTAAAACAC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
42 46 0.98
43 1 0.02
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.28
Consensus pattern (42 bp):
GTGTAACTCACTGAGTAGCCACACACGGCCGTGTACTAGGCT
Found at i:32700462 original size:22 final size:22
Alignment explanation
Indices: 32700428--32700482 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
32700418 AAAAAAGTAG
*
32700428 GCACCAAAGTGCAAATCAATAA
1 GCACCGAAGTGCAAATCAATAA
* **
32700450 GTACCGAAGTGCAAATCGCTAA
1 GCACCGAAGTGCAAATCAATAA
32700472 GCACCGAAGTG
1 GCACCGAAGTG
32700483 TGAAAAAGTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.40, C:0.24, G:0.22, T:0.15
Consensus pattern (22 bp):
GCACCGAAGTGCAAATCAATAA
Found at i:32701046 original size:19 final size:20
Alignment explanation
Indices: 32700999--32701047 Score: 73
Period size: 19 Copynumber: 2.5 Consensus size: 20
32700989 TACAATATTC
32700999 ATATATTCTTATATTTTTCA
1 ATATATTCTTATATTTTTCA
*
32701019 CTATATTCTT-TATTTTTCA
1 ATATATTCTTATATTTTTCA
*
32701038 ATATTTTCTT
1 ATATATTCTT
32701048 GTAAACTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 17 0.65
20 9 0.35
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.63
Consensus pattern (20 bp):
ATATATTCTTATATTTTTCA
Found at i:32705824 original size:36 final size:37
Alignment explanation
Indices: 32705774--32705843 Score: 90
Period size: 36 Copynumber: 1.9 Consensus size: 37
32705764 TTCATATGAA
* *
32705774 TTACTTAATTTTATTATAA-TAT-ATATTATATATAT
1 TTACTTAACTTTATTAAAATTATAATATTATATATAT
*
32705809 TTACTTTAACTTTATTAAAATTTTAATATTATATA
1 TTAC-TTAACTTTATTAAAATTATAATATTATATA
32705844 ACTACTACCT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
35 4 0.14
36 13 0.45
37 2 0.07
38 10 0.34
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (37 bp):
TTACTTAACTTTATTAAAATTATAATATTATATATAT
Found at i:32707454 original size:41 final size:41
Alignment explanation
Indices: 32707397--32707479 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
32707387 ATTATGTTGG
32707397 AATGTTCGTGGATTGGGGAGTCCACGGGTAGGCTTCAGCAT
1 AATGTTCGTGGATTGGGGAGTCCACGGGTAGGCTTCAGCAT
*
32707438 AATGTTCGTGGATTGGGGAGTCCACGGGTAGGCTTTAGCAT
1 AATGTTCGTGGATTGGGGAGTCCACGGGTAGGCTTCAGCAT
32707479 A
1 A
32707480 TGCTGAAGGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.20, C:0.16, G:0.36, T:0.28
Consensus pattern (41 bp):
AATGTTCGTGGATTGGGGAGTCCACGGGTAGGCTTCAGCAT
Found at i:32710151 original size:21 final size:21
Alignment explanation
Indices: 32710127--32710169 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
32710117 CTGATTTTAT
32710127 TAGTGCTCAGTTAGGAAATAG
1 TAGTGCTCAGTTAGGAAATAG
32710148 TAGTGCTCAGTTAGGAAATAG
1 TAGTGCTCAGTTAGGAAATAG
32710169 T
1 T
32710170 CCATCGTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (21 bp):
TAGTGCTCAGTTAGGAAATAG
Found at i:32712493 original size:25 final size:26
Alignment explanation
Indices: 32712447--32712499 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 26
32712437 ATAAAATTGA
32712447 AACAAATCAATATAAATAAAAT-ATT
1 AACAAATCAATATAAATAAAATAATT
* * * *
32712472 AACAAATCGATATTATTTAAATAATT
1 AACAAATCAATATAAATAAAATAATT
32712498 AA
1 AA
32712500 TATTGATCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.32
Consensus pattern (26 bp):
AACAAATCAATATAAATAAAATAATT
Found at i:32715155 original size:48 final size:48
Alignment explanation
Indices: 32715053--32715249 Score: 225
Period size: 48 Copynumber: 4.1 Consensus size: 48
32715043 AACAGATTTC
** * * * * * *
32715053 TCGGTGGCCTGCACACAGTCCGTATCACCTTTGTGTAATAATAGATTC
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGAATA
* * * *
32715101 TCGGTGGCCTGCACATAGTCTGTGCCACCCTTGTATCTTAACATG-TTA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACA-GAATA
* *
32715149 TTGGTGGCCTACACACAGTCCGTGCCACCCTTGTATCATAACAGAATA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGAATA
* * *
32715197 TCAGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCATAATAGAATA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGAATA
32715245 TCGGT
1 TCGGT
32715250 ACGCATAGTA
Statistics
Matches: 125, Mismatches: 22, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
47 1 0.01
48 123 0.98
49 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (48 bp):
TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGAATA
Found at i:32716756 original size:25 final size:25
Alignment explanation
Indices: 32716726--32716775 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
32716716 AATTGTTTGA
*
32716726 ATATGAATATGCAGTGAATTGGATT
1 ATATGAAAATGCAGTGAATTGGATT
*
32716751 ATATGAAAATGTAGTGAATTGGATT
1 ATATGAAAATGCAGTGAATTGGATT
32716776 TCTATGGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.02, G:0.24, T:0.36
Consensus pattern (25 bp):
ATATGAAAATGCAGTGAATTGGATT
Found at i:32719537 original size:14 final size:14
Alignment explanation
Indices: 32719514--32719547 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
32719504 TCCCATTTTC
32719514 AAAA-AAATAAAAT
1 AAAATAAATAAAAT
*
32719527 AAAATAAATAAGAT
1 AAAATAAATAAAAT
32719541 AAAATAA
1 AAAATAA
32719548 CCAAAATCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (14 bp):
AAAATAAATAAAAT
Found at i:32724553 original size:65 final size:64
Alignment explanation
Indices: 32724482--32724629 Score: 210
Period size: 65 Copynumber: 2.3 Consensus size: 64
32724472 CTATGTAAGC
32724482 CTTTATTCTGCCATCACATGCTAGTGCGTCCCACCATGCCTTGACTATTTTTTAATATCACATG
1 CTTTATTCTGCCATCACATGCTAGTGCGTCCCACCATGCCTTGACTATTTTTTAATATCACATG
** * * *
32724546 CTTTTATTCAT-CCATCACATGCTAGTGTTTCCCATCATGCCTTTACTGTTTTTTAATATCACAT
1 C-TTTATTC-TGCCATCACATGCTAGTGCGTCCCACCATGCCTTGACTATTTTTTAATATCACAT
32724610 G
64 G
*
32724611 C-TTATTATGCCATCACATG
1 CTTTATTCTGCCATCACATG
32724630 ATGTCTTTAC
Statistics
Matches: 75, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
62 1 0.01
63 15 0.20
64 1 0.01
65 57 0.76
66 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.11, T:0.41
Consensus pattern (64 bp):
CTTTATTCTGCCATCACATGCTAGTGCGTCCCACCATGCCTTGACTATTTTTTAATATCACATG
Found at i:32725399 original size:24 final size:24
Alignment explanation
Indices: 32725350--32725399 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
32725340 CCACTATTAA
* **
32725350 ATGGATTCCTTCTACTCAAGTGTC
1 ATGGATGCCTTCTACTCAAGAATC
*
32725374 ATGGATGCCTTCTACTTAAGAATC
1 ATGGATGCCTTCTACTCAAGAATC
32725398 AT
1 AT
32725400 CTGTCTCAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (24 bp):
ATGGATGCCTTCTACTCAAGAATC
Found at i:32726040 original size:38 final size:38
Alignment explanation
Indices: 32725963--32726040 Score: 93
Period size: 38 Copynumber: 2.1 Consensus size: 38
32725953 GAACAATAAT
* *
32725963 AATACCAACAATCACATAAACTGGTTTTCCATTTCAAC
1 AATACCAACAATCACATAAACTGATTTTCCATTTAAAC
* * * **
32726001 AATACCAACATTTACATAAGCTGATTTTTTATTTAAAC
1 AATACCAACAATCACATAAACTGATTTTCCATTTAAAC
32726039 AA
1 AA
32726041 CAAAAAAATT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (38 bp):
AATACCAACAATCACATAAACTGATTTTCCATTTAAAC
Found at i:32730634 original size:3 final size:3
Alignment explanation
Indices: 32730626--32730669 Score: 52
Period size: 3 Copynumber: 14.0 Consensus size: 3
32730616 CATTTTAGTG
* *
32730626 TTA TTA TTA TTA TTA TTA TTTA TTA TTA CTA TTAA TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TT-A TTA TTA TTA
32730670 GTTTCATCTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
3 29 0.83
4 6 0.17
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:32730650 original size:16 final size:17
Alignment explanation
Indices: 32730629--32730669 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
32730619 TTTAGTGTTA
*
32730629 TTATTATTATTATT-AT
1 TTATTATTACTATTAAT
32730645 TTATTATTACTATTAAT
1 TTATTATTACTATTAAT
32730662 TT-TTATTA
1 TTATTATTA
32730670 GTTTCATCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (17 bp):
TTATTATTACTATTAAT
Found at i:32730650 original size:19 final size:19
Alignment explanation
Indices: 32730626--32730669 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
32730616 CATTTTAGTG
*
32730626 TTATTATTATTATT-ATTAT
1 TTATTATTACTATTAATT-T
32730645 TTATTATTACTATTAATTT
1 TTATTATTACTATTAATTT
32730664 TTATTA
1 TTATTA
32730670 GTTTCATCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 20 0.87
20 3 0.13
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
TTATTATTACTATTAATTT
Found at i:32735361 original size:37 final size:35
Alignment explanation
Indices: 32735301--32735377 Score: 93
Period size: 34 Copynumber: 2.1 Consensus size: 35
32735291 ATTCAATCAA
*
32735301 AAAAATAAAAATTCAAAATCAAAAAACAAAAAAAGAAG
1 AAAAAGAAAAATTCAAAATC--AAAA-AAAAAAAGAAG
* *
32735339 AAAAAGAAAAA-TCAAAGTCAAAAGAAAAAAGAAG
1 AAAAAGAAAAATTCAAAATCAAAAAAAAAAAGAAG
32735373 AAAAA
1 AAAAA
32735378 TCAATCAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
34 15 0.42
35 4 0.11
37 7 0.19
38 10 0.28
ACGTcount: A:0.77, C:0.06, G:0.09, T:0.08
Consensus pattern (35 bp):
AAAAAGAAAAATTCAAAATCAAAAAAAAAAAGAAG
Found at i:32735398 original size:38 final size:37
Alignment explanation
Indices: 32735301--32735427 Score: 105
Period size: 38 Copynumber: 3.3 Consensus size: 37
32735291 ATTCAATCAA
*
32735301 AAAAATAAAAATTCAAAATCAAAAAACAAAAAAAGAAG
1 AAAAAGAAAAA-TCAAAATCAAAAAACAAAAAAAGAAG
* *
32735339 AAAAAGAAAAATCAAAGTCAAAAGAA-AAAAGAAGAA-
1 AAAAAGAAAAATCAAAATCAAAA-AACAAAAAAAGAAG
** * *
32735375 AAATCAATCAAAATCAAAATCAAAATCAAAATAAAAAAAGGAG
1 AAA--AAGAAAAATCAAAATC--AA--AAAACAAAAAAAGAAG
32735418 AAAAAGAAAA
1 AAAAAGAAAA
32735428 GGAGAGGCTA
Statistics
Matches: 70, Mismatches: 10, Indels: 15
0.74 0.11 0.16
Matches are distributed among these distances:
36 3 0.04
37 20 0.29
38 25 0.36
40 2 0.03
41 7 0.10
42 10 0.14
43 3 0.04
ACGTcount: A:0.74, C:0.08, G:0.09, T:0.09
Consensus pattern (37 bp):
AAAAAGAAAAATCAAAATCAAAAAACAAAAAAAGAAG
Found at i:32735411 original size:6 final size:6
Alignment explanation
Indices: 32735380--32735410 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
32735370 AAGAAAAATC
32735380 AATCAA AATCAA AATCAA AATCAA AAT-AA AA
1 AATCAA AATCAA AATCAA AATCAA AATCAA AA
32735411 AAAGGAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.71, C:0.13, G:0.00, T:0.16
Consensus pattern (6 bp):
AATCAA
Found at i:32736643 original size:19 final size:19
Alignment explanation
Indices: 32736619--32736662 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
32736609 TATTTTAGTG
* *
32736619 TTATTATTATTATTATTTT
1 TTATTATTACTATTAATTT
32736638 TTATTATTACTATTAATTT
1 TTATTATTACTATTAATTT
32736657 TTATTA
1 TTATTA
32736663 GTTTCATCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATTATTACTATTAATTT
Found at i:32739332 original size:27 final size:26
Alignment explanation
Indices: 32739301--32739478 Score: 151
Period size: 27 Copynumber: 6.6 Consensus size: 26
32739291 TAAATTGTAC
32739301 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
32739328 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
32739354 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
* *
32739382 GGCACTAAGAGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* * *
32739410 AGCACCAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
32739437 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
32739464 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32739479 GACTTAATAA
Statistics
Matches: 122, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
26 1 0.01
27 98 0.80
28 23 0.19
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:32739421 original size:82 final size:81
Alignment explanation
Indices: 32739302--32739457 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
32739292 AAATTGTACA
* * * * *
32739302 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGAGTGCGAGTCGACTATGTAGCACCAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
32739366 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32739383 GCACTAAGAGTGCGAGTCTGACTATGTAGCACCAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGAGTGCGAGTC-GACTATGTAGCACCAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
32739448 TGCGAGTTGA
65 TGCGAATTGA
32739458 TTATATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 17 0.27
82 47 0.73
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (81 bp):
GCACTAAGAGTGCGAGTCGACTATGTAGCACCAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32739469 original size:82 final size:81
Alignment explanation
Indices: 32739298--32739478 Score: 202
Period size: 82 Copynumber: 2.2 Consensus size: 81
32739288 GATTAAATTG
* * * *
32739298 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACCAAGTGTGCGAAATGAATACGATGCACTAA
32739363 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
32739379 TGCGGCACTAAGAGTGCGAGTCTGACTATGTAGCACCAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACCAAGTGTGCGAAATGAATACGAT-GCACT
* **
32739443 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32739461 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32739479 GACTTAATAA
Statistics
Matches: 80, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
81 19 0.24
82 61 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACCAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32746743 original size:16 final size:15
Alignment explanation
Indices: 32746722--32746763 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
32746712 GCATAACATT
*
32746722 TTTATTTTATCTTTTA
1 TTTATTTT-TCATTTA
32746738 TTTATTTGTTCATTTA
1 TTTATTT-TTCATTTA
32746754 TTTATTTTTC
1 TTTATTTTTC
32746764 TATCATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 3 0.12
16 20 0.83
17 1 0.04
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.74
Consensus pattern (15 bp):
TTTATTTTTCATTTA
Found at i:32748050 original size:27 final size:27
Alignment explanation
Indices: 32747996--32748054 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
32747986 ATATGCTGGA
* *
32747996 GGCTTCTTTAGAGGTTCATGGATTGGT
1 GGCTTCTTTAGAGGTTCATAGATCGGT
* *
32748023 GGCTTCTTTGGAGGTTCATATATCGGT
1 GGCTTCTTTAGAGGTTCATAGATCGGT
32748050 GGCTT
1 GGCTT
32748055 GTGTTCTGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.14, C:0.14, G:0.32, T:0.41
Consensus pattern (27 bp):
GGCTTCTTTAGAGGTTCATAGATCGGT
Found at i:32749234 original size:16 final size:15
Alignment explanation
Indices: 32749213--32749254 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
32749203 GCATAACATT
*
32749213 TTTATTTTATCTTTTA
1 TTTATTTT-TCATTTA
32749229 TTTATTTGTTCATTTA
1 TTTATTT-TTCATTTA
32749245 TTTATTTTTC
1 TTTATTTTTC
32749255 TATCATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 3 0.12
16 20 0.83
17 1 0.04
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.74
Consensus pattern (15 bp):
TTTATTTTTCATTTA
Found at i:32750541 original size:27 final size:27
Alignment explanation
Indices: 32750487--32750545 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
32750477 ATATGCTGGA
* *
32750487 GGCTTCTTTAGAGGTTCATGGATTGGT
1 GGCTTCTTTAGAGGTTCATAGATCGGT
* *
32750514 GGCTTCTTTGGAGGTTCATATATCGGT
1 GGCTTCTTTAGAGGTTCATAGATCGGT
32750541 GGCTT
1 GGCTT
32750546 GTGTTCTGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.14, C:0.14, G:0.32, T:0.41
Consensus pattern (27 bp):
GGCTTCTTTAGAGGTTCATAGATCGGT
Found at i:32750668 original size:48 final size:48
Alignment explanation
Indices: 32750616--32750730 Score: 149
Period size: 48 Copynumber: 2.4 Consensus size: 48
32750606 ATGAATCGGT
* * ** *
32750616 GGCTTCTTTGGAAATTCATGGAGTGGTGGTTTATGTTTATACATTGGA
1 GGCTTCTTTGGAAGTTCATGGAGTGATGGCGTAGGTTTATACATTGGA
* * *
32750664 GGCTTCTTTAGAGGTTCATGGATTGATGGCGTAGGTTTATACATTGGA
1 GGCTTCTTTGGAAGTTCATGGAGTGATGGCGTAGGTTTATACATTGGA
*
32750712 GGCTTATTTGGAAGTTCAT
1 GGCTTCTTTGGAAGTTCAT
32750731 CTGATGGTGG
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 56 1.00
ACGTcount: A:0.21, C:0.10, G:0.30, T:0.40
Consensus pattern (48 bp):
GGCTTCTTTGGAAGTTCATGGAGTGATGGCGTAGGTTTATACATTGGA
Found at i:32763350 original size:51 final size:51
Alignment explanation
Indices: 32763271--32763370 Score: 175
Period size: 51 Copynumber: 2.0 Consensus size: 51
32763261 TTAATGAATC
32763271 CTATGTACAAAAGTTTTTAAAAAAAATATTTATACATGAACTCAAAATAAA
1 CTATGTACAAAAGTTTTTAAAAAAAATATTTATACATGAACTCAAAATAAA
*
32763322 CTATGTACAAAAGTTCTTT-AAAATAATATTTATACATGAACTCAAAATA
1 CTATGTACAAAAGTT-TTTAAAAAAAATATTTATACATGAACTCAAAATA
32763371 GACTTGAAAT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
51 44 0.94
52 3 0.06
ACGTcount: A:0.50, C:0.11, G:0.06, T:0.33
Consensus pattern (51 bp):
CTATGTACAAAAGTTTTTAAAAAAAATATTTATACATGAACTCAAAATAAA
Found at i:32764736 original size:17 final size:19
Alignment explanation
Indices: 32764705--32764739 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
32764695 ACTAATGAAT
32764705 AAAAGAGAAGAAAATCTAG
1 AAAAGAGAAGAAAATCTAG
32764724 AAAAGA-AAG-AAATCTA
1 AAAAGAGAAGAAAATCTA
32764740 AAATCACCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.66, C:0.06, G:0.17, T:0.11
Consensus pattern (19 bp):
AAAAGAGAAGAAAATCTAG
Found at i:32772009 original size:18 final size:17
Alignment explanation
Indices: 32771978--32772019 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
32771968 TTGTTTGTAT
32771978 ATTTTTTTCA-TTTTATA
1 ATTTTTTTCATTTTTA-A
*
32771995 ATTTTTATTCCTTTTTAA
1 ATTTTT-TTCATTTTTAA
32772013 ATTTTTT
1 ATTTTTT
32772020 AATTAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 7 0.32
18 10 0.45
19 5 0.23
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.71
Consensus pattern (17 bp):
ATTTTTTTCATTTTTAA
Found at i:32786762 original size:37 final size:37
Alignment explanation
Indices: 32786721--32786815 Score: 127
Period size: 37 Copynumber: 2.6 Consensus size: 37
32786711 TACTCCCTAT
* * *
32786721 TTTGGCTTGTTATCGGGTGGATTAGCTCTTATGAGCA
1 TTTGGCGTGTTATCGGTTGGATTAACTCTTATGAGCA
* * * *
32786758 TTTGGCGTGTTTTCCGTTGGATTAACTGTTATGAGCG
1 TTTGGCGTGTTATCGGTTGGATTAACTCTTATGAGCA
32786795 TTTGGCGTGTTATCGGTTGGA
1 TTTGGCGTGTTATCGGTTGGA
32786816 CTACTGTGCT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.14, C:0.13, G:0.32, T:0.42
Consensus pattern (37 bp):
TTTGGCGTGTTATCGGTTGGATTAACTCTTATGAGCA
Found at i:32795709 original size:61 final size:61
Alignment explanation
Indices: 32795637--32795752 Score: 178
Period size: 61 Copynumber: 1.9 Consensus size: 61
32795627 TTTAATATTT
* *
32795637 AATTTAATTTAATAGTTATGTTGATTGTATTTTACTAATTTAATATTAATGTGAGCTGTTA
1 AATTTAATTTAATAGTTATCTTGATAGTATTTTACTAATTTAATATTAATGTGAGCTGTTA
* * * *
32795698 AATTTGATTTAATATTTATCTTTATAGTATTTTATTAATTTAATATTAATGTGAG
1 AATTTAATTTAATAGTTATCTTGATAGTATTTTACTAATTTAATATTAATGTGAG
32795753 TAATTTCAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 49 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (61 bp):
AATTTAATTTAATAGTTATCTTGATAGTATTTTACTAATTTAATATTAATGTGAGCTGTTA
Found at i:32798773 original size:13 final size:13
Alignment explanation
Indices: 32798755--32798780 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32798745 TAAATTAATA
32798755 CGTGTGAAAATTT
1 CGTGTGAAAATTT
32798768 CGTGTGAAAATTT
1 CGTGTGAAAATTT
32798781 TATTATTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
CGTGTGAAAATTT
Found at i:32800003 original size:43 final size:43
Alignment explanation
Indices: 32799886--32800012 Score: 127
Period size: 43 Copynumber: 2.9 Consensus size: 43
32799876 TAGGATTCAT
*
32799886 TTATGTGTTATCGTGTAAAACCACGTCTGGGACGTTGGCATCAA
1 TTATGTGTTA-CGTGTAAGACCACGTCTGGGACGTTGGCATCAA
* * *
32799930 CT-TGTGTTTACGTGTAAGACC-CTGTTTGGGACAG-TGGCATC-G
1 TTATGTG-TTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCAA
* *
32799972 TTATGTGATTACATGTAAGACCACGTCTGGGATGTTGGCAT
1 TTATGTG-TTACGTGTAAGACCACGTCTGGGACGTTGGCAT
32800013 TGTACGATAT
Statistics
Matches: 68, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
42 3 0.04
43 59 0.87
44 6 0.09
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (43 bp):
TTATGTGTTACGTGTAAGACCACGTCTGGGACGTTGGCATCAA
Found at i:32801021 original size:23 final size:23
Alignment explanation
Indices: 32800990--32801189 Score: 240
Period size: 23 Copynumber: 8.7 Consensus size: 23
32800980 ATTGGGTATA
* * *
32800990 TATATATGCTGTCAAATTTTGTG
1 TATAAATGCTGTCCAATTTGGTG
*
32801013 TATAAATGCTGTCCAATTTAGTG
1 TATAAATGCTGTCCAATTTGGTG
*
32801036 TATATATGCTGTCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
*
32801059 TATAAATGTTGTCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
**
32801082 TATAAATATTGTCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
* *
32801105 TATATATGCTGTCCAATTTGGTA
1 TATAAATGCTGTCCAATTTGGTG
* *
32801128 TATATATGCTGTCCAATTGGGTG
1 TATAAATGCTGTCCAATTTGGTG
* * * *
32801151 TATAAATGATGTTCGATTTGATG
1 TATAAATGCTGTCCAATTTGGTG
32801174 TATAAGA-GCTGTCCAA
1 TATAA-ATGCTGTCCAA
32801190 ACAGGGTAGA
Statistics
Matches: 153, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
23 152 0.99
24 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (23 bp):
TATAAATGCTGTCCAATTTGGTG
Found at i:32801170 original size:69 final size:69
Alignment explanation
Indices: 32800988--32801177 Score: 265
Period size: 69 Copynumber: 2.8 Consensus size: 69
32800978 TGATTGGGTA
* * * *
32800988 TATATATATGCTGTCAAATTTTGTGTATAAATGCTGTCCAATTTAGTGTATATATGCTGTCCAAT
1 TATATATATGCTGTCCAATTTGGTGTATAAATGATGTCCAATTTGGTGTATATATGCTGTCCAAT
32801053 TTGG
66 TTGG
* * *
32801057 TGTATAAATGTTGTCCAATTTGGTGTATAAAT-ATTGTCCAATTTGGTGTATATATGCTGTCCAA
1 TATATATATGCTGTCCAATTTGGTGTATAAATGA-TGTCCAATTTGGTGTATATATGCTGTCCAA
32801121 TTTGG
65 TTTGG
* * * *
32801126 TATATATATGCTGTCCAATTGGGTGTATAAATGATGTTCGATTTGATGTATA
1 TATATATATGCTGTCCAATTTGGTGTATAAATGATGTCCAATTTGGTGTATA
32801178 AGAGCTGTCC
Statistics
Matches: 105, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
69 104 0.99
70 1 0.01
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.43
Consensus pattern (69 bp):
TATATATATGCTGTCCAATTTGGTGTATAAATGATGTCCAATTTGGTGTATATATGCTGTCCAAT
TTGG
Found at i:32803412 original size:20 final size:20
Alignment explanation
Indices: 32803385--32803443 Score: 50
Period size: 20 Copynumber: 3.0 Consensus size: 20
32803375 CTATCTTCCA
32803385 CTTT-TTTATTCTATATTTT
1 CTTTATTTATTCTATATTTT
*
32803404 CTTTATTTAGT-TATTATTTT
1 CTTTATTTATTCTA-TATTTT
*** *
32803424 GAATATTTATTCTTTATTTT
1 CTTTATTTATTCTATATTTT
32803444 TAATTTTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
19 6 0.19
20 24 0.77
21 1 0.03
ACGTcount: A:0.20, C:0.07, G:0.03, T:0.69
Consensus pattern (20 bp):
CTTTATTTATTCTATATTTT
Found at i:32805990 original size:24 final size:24
Alignment explanation
Indices: 32805962--32806021 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
32805952 TCCTTCAACA
*
32805962 TGTGGAGGTTTACCCCCTGAATG-
1 TGTGGAGGTTTACCACCTGAATGC
*
32805985 TCGTGGAGGTTTACCACCTGAGTGC
1 T-GTGGAGGTTTACCACCTGAATGC
32806010 TGTGGAGGTTTA
1 TGTGGAGGTTTA
32806022 TGTGTGCCCT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
23 1 0.03
24 31 0.94
25 1 0.03
ACGTcount: A:0.17, C:0.18, G:0.33, T:0.32
Consensus pattern (24 bp):
TGTGGAGGTTTACCACCTGAATGC
Found at i:32806061 original size:171 final size:172
Alignment explanation
Indices: 32805703--32806123 Score: 559
Period size: 171 Copynumber: 2.4 Consensus size: 172
32805693 CACTTAAGAG
*
32805703 GTGTCTATGAGGAGGTTTAGGTTCATGAGGTGCTCCCTTTCCCTTACCCTTGGATGGTTTGTCAC
1 GTGTCTATGAGGAGGTTTGGGTTCATGAGGTGCTCCCTTTCCCTTACCCTTGGATGGTTTGTCAC
* ** * * * *
32805768 CGGGGAATGGTTTCATGGATGGCTTACCGTCAGGGAATCCTTCAACATGTGGAGGTTTACCCCCT
66 CAGGGAATCCTTACATGGATGGCTTACCG-CACGGAAT-CGT--ACA-GTGGAGGTTTACCACCT
* * *
32805833 GAGTGTCGTGGAGGTTTATGTGTGTCCTCAACTTCCACATTCAATAG
126 GAGTGTCGTGGAGGTTTATGTGTGCCCTCAACTTCCACACTCAATAA
32805880 GTGTCTATGAGGAGGTTTGGGTTCATGAGGTGC-CCCTTTTCCCTTACCCTTGGATGGTTTGTCA
1 GTGTCTATGAGGAGGTTTGGGTTCATGAGGTGCTCCC-TTTCCCTTACCCTTGGATGGTTTGTCA
* * *
32805944 CCAGGGAATCCTTCAACATGTGGA-GGTTTACC-CCCTGAAT-GT-C-GTGGAGGTTTACCACCT
65 CCAGGGAATCCTT--ACA--TGGATGGCTTACCGCACGGAATCGTACAGTGGAGGTTTACCACCT
32806004 GAGTG-CTGTGGAGGTTTATGTGTGCCCTCAACTTCCACACTCAATAA
126 GAGTGTC-GTGGAGGTTTATGTGTGCCCTCAACTTCCACACTCAATAA
*
32806051 GTGTCTATGAGGAGGTTTGGGTTCATGAGGTGCTCCCTTTCCCTTACCCTTGGATGGTTTTTCAC
1 GTGTCTATGAGGAGGTTTGGGTTCATGAGGTGCTCCCTTTCCCTTACCCTTGGATGGTTTGTCAC
32806116 CAGGGAAT
66 CAGGGAAT
32806124 GGCTTCATGG
Statistics
Matches: 222, Mismatches: 15, Indels: 20
0.86 0.06 0.08
Matches are distributed among these distances:
170 1 0.00
171 126 0.57
172 3 0.01
173 1 0.00
176 4 0.02
177 69 0.31
178 5 0.02
179 2 0.01
180 7 0.03
181 4 0.02
ACGTcount: A:0.18, C:0.22, G:0.27, T:0.33
Consensus pattern (172 bp):
GTGTCTATGAGGAGGTTTGGGTTCATGAGGTGCTCCCTTTCCCTTACCCTTGGATGGTTTGTCAC
CAGGGAATCCTTACATGGATGGCTTACCGCACGGAATCGTACAGTGGAGGTTTACCACCTGAGTG
TCGTGGAGGTTTATGTGTGCCCTCAACTTCCACACTCAATAA
Found at i:32806192 original size:24 final size:24
Alignment explanation
Indices: 32806164--32806222 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
32806154 CCCTCAACAT
* *
32806164 GTGGAGGTTTACCCCCCGAGTGTC
1 GTGGAGGTTTACCACCCGAATGTC
* *
32806188 TTGGAGGTTTACCACCTGAATGTC
1 GTGGAGGTTTACCACCCGAATGTC
32806212 GTGGAGGTTTA
1 GTGGAGGTTTA
32806223 TGTGTGCCCT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.17, C:0.20, G:0.32, T:0.31
Consensus pattern (24 bp):
GTGGAGGTTTACCACCCGAATGTC
Found at i:32808152 original size:21 final size:21
Alignment explanation
Indices: 32808137--32808179 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
32808127 TTATTTTAAA
32808137 AAAATATTATAATATTAATAT
1 AAAATATTATAATATTAATAT
*
32808158 AAAATATTATAATTTTCAATAT
1 AAAATATTATAATATT-AATAT
32808180 GATTAAACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
AAAATATTATAATATTAATAT
Found at i:32808228 original size:9 final size:9
Alignment explanation
Indices: 32808202--32808243 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
32808192 ATATTTAATC
32808202 ATATAA-TA
1 ATATAATTA
*
32808210 A-ATTATTA
1 ATATAATTA
32808218 ATATAATTA
1 ATATAATTA
*
32808227 ATATAAATA
1 ATATAATTA
32808236 ATATAATT
1 ATATAATT
32808244 TATTATTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
7 3 0.11
8 4 0.14
9 21 0.75
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
ATATAATTA
Found at i:32808230 original size:25 final size:25
Alignment explanation
Indices: 32808202--32808269 Score: 63
Period size: 25 Copynumber: 2.8 Consensus size: 25
32808192 ATATTTAATC
32808202 ATATAATAAATTATTAATATAATTA
1 ATATAATAAATTATTAATATAATTA
*
32808227 ATATAA-ATAA-TA-TAAT-TTATTA
1 ATATAATA-AATTATTAATATAATTA
* *
32808249 TTTTAATAAATTATTTAATAT
1 ATATAATAAATTA-TTAATAT
32808270 TTTAATTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 11
0.71 0.06 0.23
Matches are distributed among these distances:
22 11 0.32
23 7 0.21
24 3 0.09
25 12 0.35
26 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
ATATAATAAATTATTAATATAATTA
Found at i:32808319 original size:16 final size:17
Alignment explanation
Indices: 32808283--32808319 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
32808273 AATTTTATTT
*
32808283 TAATAATAAATTTTGAA
1 TAATAATAAATTTTAAA
32808300 -AATAATAAA-TTTAAA
1 TAATAATAAATTTTAAA
32808315 TAATA
1 TAATA
32808320 TTCTTCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
TAATAATAAATTTTAAA
Found at i:32815069 original size:43 final size:43
Alignment explanation
Indices: 32815006--32815309 Score: 294
Period size: 43 Copynumber: 7.1 Consensus size: 43
32814996 AATAAATGCC
*
32815006 GCTATAGATCATGACCTTTAGCGGCACTTTTCCCACAAACGTCA
1 GCTATAGATCAAGACCTTTAGCGGCACTTTTCCCACAAACG-CA
* * *
32815050 G-TATAGATCAAGACCTTTAGCGGCACTTTTTCCAAAAACGCC
1 GCTATAGATCAAGACCTTTAGCGGCACTTTTCCCACAAACGCA
* * * *
32815092 GCTATAGATTAGGACCTTTAGCGGCGCTTTT-CCACAAACGCC
1 GCTATAGATCAAGACCTTTAGCGGCACTTTTCCCACAAACGCA
* * * * * *
32815134 GCTATAGTTTAAGATCTTTAGCGGCACTTTTTCTACAAACGCT
1 GCTATAGATCAAGACCTTTAGCGGCACTTTTCCCACAAACGCA
* * *
32815177 GCTATAAATCAAGACCTTTAGCGGCATTTTTCCAACAAACGCCA
1 GCTATAGATCAAGACCTTTAGCGGCACTTTTCCCACAAACG-CA
* * ***
32815221 -CTATAGATCAAGACCTTTAGCGCCGCTTTTTGATACAAACGCCA
1 GCTATAGATCAAGACCTTTAGCGGCAC-TTTTCCCACAAACG-CA
* * * * *
32815265 -CTATAGAAC-AGACCTTTAGCGGCGCTTTTCACAAAAACGCC
1 GCTATAGATCAAGACCTTTAGCGGCACTTTTCCCACAAACGCA
32815306 GCTA
1 GCTA
32815310 AAAACATATC
Statistics
Matches: 220, Mismatches: 35, Indels: 12
0.82 0.13 0.04
Matches are distributed among these distances:
41 1 0.00
42 53 0.24
43 142 0.65
44 24 0.11
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (43 bp):
GCTATAGATCAAGACCTTTAGCGGCACTTTTCCCACAAACGCA
Found at i:32815236 original size:128 final size:128
Alignment explanation
Indices: 32815003--32815303 Score: 374
Period size: 128 Copynumber: 2.3 Consensus size: 128
32814993 TGAAATAAAT
* *
32815003 GCCGCTATAGATCATGACCTTTAGCGGCACTTTTCCCACAAACGTCAGTATAGATCAAGACCTTT
1 GCCGCTATAGATCAAGACCTTTAGCGGCACTTTTCCCACAAACGTCAGTATAAATCAAGACCTTT
* * * *
32815068 AGCGGCACTTTTTCCAAAAACGCCGCTATAGATTAGGACCTTTAGCGGCGCTTTTCCACAAAC
66 AGCGGCACTTTTTCCAAAAACGCCACTATAGATCAAGACCTTTAGCGCCGCTTTTCCACAAAC
* * * * * *
32815131 GCCGCTATAGTTTAAGATCTTTAGCGGCACTTTTTCTACAAACG-CTGCTATAAATCAAGACCTT
1 GCCGCTATAGATCAAGACCTTTAGCGGCACTTTTCCCACAAACGTCAG-TATAAATCAAGACCTT
**
32815195 TAGCGGCA-TTTTTCCAACAAACGCCACTATAGATCAAGACCTTTAGCGCCGCTTTTTGATACAA
65 TAGCGGCACTTTTTCCAA-AAACGCCACTATAGATCAAGACCTTTAGCGCCGC-TTTT-CCACAA
32815259 AC
127 AC
* * * * *
32815261 GCCACTATAGAAC-AGACCTTTAGCGGCGCTTTTCACAAAAACG
1 GCCGCTATAGATCAAGACCTTTAGCGGCACTTTTCCCACAAACG
32815304 CCGCTAAAAA
Statistics
Matches: 145, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
127 11 0.08
128 91 0.63
129 28 0.19
130 15 0.10
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (128 bp):
GCCGCTATAGATCAAGACCTTTAGCGGCACTTTTCCCACAAACGTCAGTATAAATCAAGACCTTT
AGCGGCACTTTTTCCAAAAACGCCACTATAGATCAAGACCTTTAGCGCCGCTTTTCCACAAAC
Found at i:32815278 original size:86 final size:86
Alignment explanation
Indices: 32815003--32815305 Score: 344
Period size: 86 Copynumber: 3.5 Consensus size: 86
32814993 TGAAATAAAT
* * * * *
32815003 GCCGCTATAGATCATGACCTTTAGCGGCACTTTTCCCACAAACGTCAGTATAGATCAAGACCTTT
1 GCCGCTATAGAACAGGACCTTTAGCGGCACTTTTCCAACAAACGCCACTATAGATCAAGACCTTT
** *
32815068 AGCGGCACTTTTTCCAAAAAC
66 AGCGGCACTTTTTATACAAAC
** * * * * *
32815089 GCCGCTATAGATTAGGACCTTTAGCGGCGCTTTTCC-ACAAACGCCGCTATAGTTTAAGATCTTT
1 GCCGCTATAGAACAGGACCTTTAGCGGCACTTTTCCAACAAACGCCACTATAGATCAAGACCTTT
*
32815153 AGCGGCACTTTTTCTACAAAC
66 AGCGGCACTTTTTATACAAAC
* * *
32815174 GCTGCTATA-AATCAAGACCTTTAGCGGCATTTTTCCAACAAACGCCACTATAGATCAAGACCTT
1 GCCGCTATAGAA-CAGGACCTTTAGCGGCACTTTTCCAACAAACGCCACTATAGATCAAGACCTT
* *
32815238 TAGCGCCGCTTTTTGATACAAAC
65 TAGCGGCACTTTTT-ATACAAAC
* *
32815261 GCCACTATAGAACA-GACCTTTAGCGGCGCTTTTCACAA-AAACGCC
1 GCCGCTATAGAACAGGACCTTTAGCGGCACTTTTC-CAACAAACGCC
32815306 GCTAAAAACA
Statistics
Matches: 184, Mismatches: 28, Indels: 10
0.83 0.13 0.05
Matches are distributed among these distances:
84 1 0.01
85 69 0.38
86 93 0.51
87 19 0.10
88 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (86 bp):
GCCGCTATAGAACAGGACCTTTAGCGGCACTTTTCCAACAAACGCCACTATAGATCAAGACCTTT
AGCGGCACTTTTTATACAAAC
Found at i:32818488 original size:787 final size:787
Alignment explanation
Indices: 32817479--32819052 Score: 3148
Period size: 787 Copynumber: 2.0 Consensus size: 787
32817469 GGCGACATGC
32817479 GGTGCAGTGTTACCGAACTTGTCCAGGAGCATCACAATAGCCGCATCTGCCTCAAAAGGATGGCA
1 GGTGCAGTGTTACCGAACTTGTCCAGGAGCATCACAATAGCCGCATCTGCCTCAAAAGGATGGCA
32817544 CCGCATCATTCTCACTAGTCAATAAATCATATAGCAGATGGCGATAAGCATTTCATAACATTAGT
66 CCGCATCATTCTCACTAGTCAATAAATCATATAGCAGATGGCGATAAGCATTTCATAACATTAGT
32817609 GTGACAATATTGAATATGTTGTCTTGCACTTCAAATCTCCATCATAGTTCCCAAATAATCATAAT
131 GTGACAATATTGAATATGTTGTCTTGCACTTCAAATCTCCATCATAGTTCCCAAATAATCATAAT
32817674 TTCTTTTGTTTTGTCGTAGAAAAAAAAACTTGCTGCAAGGAATGGATTATATATGACATTAATCA
196 TTCTTTTGTTTTGTCGTAGAAAAAAAAACTTGCTGCAAGGAATGGATTATATATGACATTAATCA
32817739 AAGGCAACCAAGTAAAAGTAATCCATTTTTACTTTTTGGTTCAAAATATTCTATCCCCCATTTAC
261 AAGGCAACCAAGTAAAAGTAATCCATTTTTACTTTTTGGTTCAAAATATTCTATCCCCCATTTAC
32817804 CAACATCTTTCGAGCTATCAAACATAGCTTTATCATCAAATTTATTCATCAGACTTTGAGACCAA
326 CAACATCTTTCGAGCTATCAAACATAGCTTTATCATCAAATTTATTCATCAGACTTTGAGACCAA
32817869 CTTGAACCAGTGCTTTTACTAAATACCATATTCACAAGAACTTGACTAACCAATTGAAATCAAAT
391 CTTGAACCAGTGCTTTTACTAAATACCATATTCACAAGAACTTGACTAACCAATTGAAATCAAAT
32817934 AACAGCACAAGCAAAATCACAAAACGAAAGCTAAAAATCATTACCATGGTGCCCTTGGCTTGCAG
456 AACAGCACAAGCAAAATCACAAAACGAAAGCTAAAAATCATTACCATGGTGCCCTTGGCTTGCAG
32817999 CAATATGCAATGGATCTAACCTAGATTTGTTCTTCTTAGTAACGGTCTCTTTGTTTGAGTATTTT
521 CAATATGCAATGGATCTAACCTAGATTTGTTCTTCTTAGTAACGGTCTCTTTGTTTGAGTATTTT
32818064 AACAACTCCTTGACAACATCAAGATGCCCTTTCTTTGCAGCAGTAAACAAGGCAGTCTCCCCCAA
586 AACAACTCCTTGACAACATCAAGATGCCCTTTCTTTGCAGCAGTAAACAAGGCAGTCTCCCCCAA
32818129 CTCATTCACCTCGTTTACCACACTAGCCTGTATCTCTGAAACCTCCATATTGAAATCTTCCCCAC
651 CTCATTCACCTCGTTTACCACACTAGCCTGTATCTCTGAAACCTCCATATTGAAATCTTCCCCAC
32818194 TCGCAGTCTTCATCATCTGAGAATCAATGTCCATCTCAGGAATCTTCTAGCATTGATCGATCCAC
716 TCGCAGTCTTCATCATCTGAGAATCAATGTCCATCTCAGGAATCTTCTAGCATTGATCGATCCAC
32818259 GTGAACT
781 GTGAACT
32818266 GGTGCAGTGTTACCGAACTTGTCCAGGAGCATCACAATAGCCGCATCTGCCTCAAAAGGATGGCA
1 GGTGCAGTGTTACCGAACTTGTCCAGGAGCATCACAATAGCCGCATCTGCCTCAAAAGGATGGCA
32818331 CCGCATCATTCTCACTAGTCAATAAATCATATAGCAGATGGCGATAAGCATTTCATAACATTAGT
66 CCGCATCATTCTCACTAGTCAATAAATCATATAGCAGATGGCGATAAGCATTTCATAACATTAGT
32818396 GTGACAATATTGAATATGTTGTCTTGCACTTCAAATCTCCATCATAGTTCCCAAATAATCATAAT
131 GTGACAATATTGAATATGTTGTCTTGCACTTCAAATCTCCATCATAGTTCCCAAATAATCATAAT
32818461 TTCTTTTGTTTTGTCGTAGAAAAAAAAACTTGCTGCAAGGAATGGATTATATATGACATTAATCA
196 TTCTTTTGTTTTGTCGTAGAAAAAAAAACTTGCTGCAAGGAATGGATTATATATGACATTAATCA
32818526 AAGGCAACCAAGTAAAAGTAATCCATTTTTACTTTTTGGTTCAAAATATTCTATCCCCCATTTAC
261 AAGGCAACCAAGTAAAAGTAATCCATTTTTACTTTTTGGTTCAAAATATTCTATCCCCCATTTAC
32818591 CAACATCTTTCGAGCTATCAAACATAGCTTTATCATCAAATTTATTCATCAGACTTTGAGACCAA
326 CAACATCTTTCGAGCTATCAAACATAGCTTTATCATCAAATTTATTCATCAGACTTTGAGACCAA
32818656 CTTGAACCAGTGCTTTTACTAAATACCATATTCACAAGAACTTGACTAACCAATTGAAATCAAAT
391 CTTGAACCAGTGCTTTTACTAAATACCATATTCACAAGAACTTGACTAACCAATTGAAATCAAAT
32818721 AACAGCACAAGCAAAATCACAAAACGAAAGCTAAAAATCATTACCATGGTGCCCTTGGCTTGCAG
456 AACAGCACAAGCAAAATCACAAAACGAAAGCTAAAAATCATTACCATGGTGCCCTTGGCTTGCAG
32818786 CAATATGCAATGGATCTAACCTAGATTTGTTCTTCTTAGTAACGGTCTCTTTGTTTGAGTATTTT
521 CAATATGCAATGGATCTAACCTAGATTTGTTCTTCTTAGTAACGGTCTCTTTGTTTGAGTATTTT
32818851 AACAACTCCTTGACAACATCAAGATGCCCTTTCTTTGCAGCAGTAAACAAGGCAGTCTCCCCCAA
586 AACAACTCCTTGACAACATCAAGATGCCCTTTCTTTGCAGCAGTAAACAAGGCAGTCTCCCCCAA
32818916 CTCATTCACCTCGTTTACCACACTAGCCTGTATCTCTGAAACCTCCATATTGAAATCTTCCCCAC
651 CTCATTCACCTCGTTTACCACACTAGCCTGTATCTCTGAAACCTCCATATTGAAATCTTCCCCAC
32818981 TCGCAGTCTTCATCATCTGAGAATCAATGTCCATCTCAGGAATCTTCTAGCATTGATCGATCCAC
716 TCGCAGTCTTCATCATCTGAGAATCAATGTCCATCTCAGGAATCTTCTAGCATTGATCGATCCAC
32819046 GTGAACT
781 GTGAACT
32819053 CCACACCTTG
Statistics
Matches: 787, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
787 787 1.00
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.30
Consensus pattern (787 bp):
GGTGCAGTGTTACCGAACTTGTCCAGGAGCATCACAATAGCCGCATCTGCCTCAAAAGGATGGCA
CCGCATCATTCTCACTAGTCAATAAATCATATAGCAGATGGCGATAAGCATTTCATAACATTAGT
GTGACAATATTGAATATGTTGTCTTGCACTTCAAATCTCCATCATAGTTCCCAAATAATCATAAT
TTCTTTTGTTTTGTCGTAGAAAAAAAAACTTGCTGCAAGGAATGGATTATATATGACATTAATCA
AAGGCAACCAAGTAAAAGTAATCCATTTTTACTTTTTGGTTCAAAATATTCTATCCCCCATTTAC
CAACATCTTTCGAGCTATCAAACATAGCTTTATCATCAAATTTATTCATCAGACTTTGAGACCAA
CTTGAACCAGTGCTTTTACTAAATACCATATTCACAAGAACTTGACTAACCAATTGAAATCAAAT
AACAGCACAAGCAAAATCACAAAACGAAAGCTAAAAATCATTACCATGGTGCCCTTGGCTTGCAG
CAATATGCAATGGATCTAACCTAGATTTGTTCTTCTTAGTAACGGTCTCTTTGTTTGAGTATTTT
AACAACTCCTTGACAACATCAAGATGCCCTTTCTTTGCAGCAGTAAACAAGGCAGTCTCCCCCAA
CTCATTCACCTCGTTTACCACACTAGCCTGTATCTCTGAAACCTCCATATTGAAATCTTCCCCAC
TCGCAGTCTTCATCATCTGAGAATCAATGTCCATCTCAGGAATCTTCTAGCATTGATCGATCCAC
GTGAACT
Found at i:32819711 original size:591 final size:591
Alignment explanation
Indices: 32818590--32819771 Score: 2355
Period size: 591 Copynumber: 2.0 Consensus size: 591
32818580 CCCCCATTTA
32818590 CCAACATCTTTCGAGCTATCAAACATAGCTTTATCATCAAATTTATTCATCAGACTTTGAGACCA
1 CCAACATCTTTCGAGCTATCAAACATAGCTTTATCATCAAATTTATTCATCAGACTTTGAGACCA
32818655 ACTTGAACCAGTGCTTTTACTAAATACCATATTCACAAGAACTTGACTAACCAATTGAAATCAAA
66 ACTTGAACCAGTGCTTTTACTAAATACCATATTCACAAGAACTTGACTAACCAATTGAAATCAAA
32818720 TAACAGCACAAGCAAAATCACAAAACGAAAGCTAAAAATCATTACCATGGTGCCCTTGGCTTGCA
131 TAACAGCACAAGCAAAATCACAAAACGAAAGCTAAAAATCATTACCATGGTGCCCTTGGCTTGCA
32818785 GCAATATGCAATGGATCTAACCTAGATTTGTTCTTCTTAGTAACGGTCTCTTTGTTTGAGTATTT
196 GCAATATGCAATGGATCTAACCTAGATTTGTTCTTCTTAGTAACGGTCTCTTTGTTTGAGTATTT
32818850 TAACAACTCCTTGACAACATCAAGATGCCCTTTCTTTGCAGCAGTAAACAAGGCAGTCTCCCCCA
261 TAACAACTCCTTGACAACATCAAGATGCCCTTTCTTTGCAGCAGTAAACAAGGCAGTCTCCCCCA
32818915 ACTCATTCACCTCGTTTACCACACTAGCCTGTATCTCTGAAACCTCCATATTGAAATCTTCCCCA
326 ACTCATTCACCTCGTTTACCACACTAGCCTGTATCTCTGAAACCTCCATATTGAAATCTTCCCCA
32818980 CTCGCAGTCTTCATCATCTGAGAATCAATGTCCATCTCAGGAATCTTCTAGCATTGATCGATCCA
391 CTCGCAGTCTTCATCATCTGAGAATCAATGTCCATCTCAGGAATCTTCTAGCATTGATCGATCCA
32819045 CGTGAACTCCACACCTTGTAAAGAATCACCACTCAAACTCCTACAACTATTATCAACAGAAATAA
456 CGTGAACTCCACACCTTGTAAAGAATCACCACTCAAACTCCTACAACTATTATCAACAGAAATAA
32819110 TCTAAGAAATATATATTGAAAGCAATAGAAATAAAAAAGAACACCTCTTGAACAGGAGGAAGTGC
521 TCTAAGAAATATATATTGAAAGCAATAGAAATAAAAAAGAACACCTCTTGAACAGGAGGAAGTGC
32819175 GGCTCT
586 GGCTCT
32819181 CCAACATCTTTCGAGCTATCAAACATAGCTTTATCATCAAATTTATTCATCAGACTTTGAGACCA
1 CCAACATCTTTCGAGCTATCAAACATAGCTTTATCATCAAATTTATTCATCAGACTTTGAGACCA
32819246 ACTTGAACCAGTGCTTTTACTAAATACCATATTCACAAGAACTTGACTAACCAATTGAAATCAAA
66 ACTTGAACCAGTGCTTTTACTAAATACCATATTCACAAGAACTTGACTAACCAATTGAAATCAAA
32819311 TAACAGCACAAGCAAAATCACAAAACGAAAGCTAAAAATCATTACCATGGTGCCCTTGGCTTGCA
131 TAACAGCACAAGCAAAATCACAAAACGAAAGCTAAAAATCATTACCATGGTGCCCTTGGCTTGCA
32819376 GCAATATGCAATGGATCTAACCTAGATTTGTTCTTCTTAGTAACGGTCTCTTTGTTTGAGTATTT
196 GCAATATGCAATGGATCTAACCTAGATTTGTTCTTCTTAGTAACGGTCTCTTTGTTTGAGTATTT
32819441 TAACAACTCCTTGACAACATCAAGATGCCCTTTCTTTGCAGCAGTAAACAAGGCAGTCTCCCCCA
261 TAACAACTCCTTGACAACATCAAGATGCCCTTTCTTTGCAGCAGTAAACAAGGCAGTCTCCCCCA
32819506 ACTCATTCACCTCGTTTACCACACTAGCCTGTATCTCTGAAACCTCCATATTGAAATCTTCCCCA
326 ACTCATTCACCTCGTTTACCACACTAGCCTGTATCTCTGAAACCTCCATATTGAAATCTTCCCCA
32819571 CTCGCAGTCTTCATCATCTGAGAATCAATGTCCATCTCAGGAATCTTCTAGCATTGATCGATCCA
391 CTCGCAGTCTTCATCATCTGAGAATCAATGTCCATCTCAGGAATCTTCTAGCATTGATCGATCCA
32819636 CGTGAACTCCACACCTTGTAAAGAATCACCACTCAAACTCCTACAACTATTATCAACAGAAATAA
456 CGTGAACTCCACACCTTGTAAAGAATCACCACTCAAACTCCTACAACTATTATCAACAGAAATAA
*
32819701 TCTAAGAAATATATATTGAAAGCAATGGAAATAAAAAAGAACACCTCTTGAACAGGAGGAAGTGC
521 TCTAAGAAATATATATTGAAAGCAATAGAAATAAAAAAGAACACCTCTTGAACAGGAGGAAGTGC
32819766 GGCTCT
586 GGCTCT
32819772 TCCTAGTTTT
Statistics
Matches: 590, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
591 590 1.00
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (591 bp):
CCAACATCTTTCGAGCTATCAAACATAGCTTTATCATCAAATTTATTCATCAGACTTTGAGACCA
ACTTGAACCAGTGCTTTTACTAAATACCATATTCACAAGAACTTGACTAACCAATTGAAATCAAA
TAACAGCACAAGCAAAATCACAAAACGAAAGCTAAAAATCATTACCATGGTGCCCTTGGCTTGCA
GCAATATGCAATGGATCTAACCTAGATTTGTTCTTCTTAGTAACGGTCTCTTTGTTTGAGTATTT
TAACAACTCCTTGACAACATCAAGATGCCCTTTCTTTGCAGCAGTAAACAAGGCAGTCTCCCCCA
ACTCATTCACCTCGTTTACCACACTAGCCTGTATCTCTGAAACCTCCATATTGAAATCTTCCCCA
CTCGCAGTCTTCATCATCTGAGAATCAATGTCCATCTCAGGAATCTTCTAGCATTGATCGATCCA
CGTGAACTCCACACCTTGTAAAGAATCACCACTCAAACTCCTACAACTATTATCAACAGAAATAA
TCTAAGAAATATATATTGAAAGCAATAGAAATAAAAAAGAACACCTCTTGAACAGGAGGAAGTGC
GGCTCT
Found at i:32820327 original size:21 final size:20
Alignment explanation
Indices: 32820303--32820356 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 20
32820293 ATCGCTGAAT
32820303 CTCTAAACCCTAA-ATCCATAA
1 CTCTAAACCCTAACAT-C-TAA
*
32820324 CTCTTAACCCCTAACATCTAA
1 CTC-TAAACCCTAACATCTAA
32820345 CTCCTAAACCCT
1 CT-CTAAACCCT
32820357 TAGCCCATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
21 15 0.54
22 11 0.39
23 2 0.07
ACGTcount: A:0.35, C:0.39, G:0.00, T:0.26
Consensus pattern (20 bp):
CTCTAAACCCTAACATCTAA
Found at i:32820398 original size:20 final size:21
Alignment explanation
Indices: 32820358--32820398 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
32820348 CTAAACCCTT
*
32820358 AGCCCATAAACCTTAAATCCC
1 AGCCCATAAACCATAAATCCC
*
32820379 AGCCCTTAAACCAT-AATCCC
1 AGCCCATAAACCATAAATCCC
32820399 TAAATTCATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.37, C:0.39, G:0.05, T:0.20
Consensus pattern (21 bp):
AGCCCATAAACCATAAATCCC
Found at i:32820936 original size:18 final size:17
Alignment explanation
Indices: 32820915--32820949 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
32820905 TTATTATTAA
*
32820915 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
32820933 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
32820950 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:32821012 original size:15 final size:14
Alignment explanation
Indices: 32820989--32821055 Score: 50
Period size: 15 Copynumber: 4.7 Consensus size: 14
32820979 TACTCAAATC
*
32820989 ATAATATATAATACT
1 ATAAAATATAATA-T
32821004 ATAAAATATAAT-T
1 ATAAAATATAATAT
32821017 -TAAAATA-AATATT
1 ATAAAATATAATA-T
* *
32821030 ATTAAATATAATTT
1 ATAAAATATAATAT
32821044 AATAAAAATATA
1 -AT-AAAATATA
32821056 TAATTTAATC
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
11 3 0.07
12 7 0.17
13 2 0.05
14 7 0.17
15 16 0.38
16 7 0.17
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (14 bp):
ATAAAATATAATAT
Found at i:32821027 original size:26 final size:25
Alignment explanation
Indices: 32820998--32821058 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 25
32820988 CATAATATAT
32820998 AATACTATAAAATATAATTTAA-AATA
1 AATA-TATAAAATATAATTTAATAA-A
*
32821024 AATATTATTAAATATAATTTAATAAA
1 AATA-TATAAAATATAATTTAATAAA
32821050 AATATATAA
1 AATATATAA
32821059 TTTAATCTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.13
26 25 0.81
27 2 0.06
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (25 bp):
AATATATAAAATATAATTTAATAAA
Found at i:32821300 original size:16 final size:17
Alignment explanation
Indices: 32821274--32821311 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
32821264 AGTAAATGAT
32821274 ATATAAGATAAATTAAC
1 ATATAAGATAAATTAAC
32821291 ATATAA-ATAAATTAAC
1 ATATAAGATAAATTAAC
*
32821307 TTATA
1 ATATA
32821312 TAATTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (17 bp):
ATATAAGATAAATTAAC
Found at i:32823792 original size:5 final size:5
Alignment explanation
Indices: 32823782--32823807 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
32823772 TCGATTTTAC
32823782 AGAAA AGAAA AGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA A
32823808 ACAGGGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:32825332 original size:114 final size:114
Alignment explanation
Indices: 32825116--32825461 Score: 531
Period size: 114 Copynumber: 3.0 Consensus size: 114
32825106 GCGGCGCTTT
* * * *
32825116 AAGCTCTGAGAATTAACGGCGCTATTTTAAAAACGCCGCTAAAGCCCTGAAAGGTCAAAAACA--
1 AAGCTCTGAGCATTAGCGGCGCT-TTTTAAAAACTCCGCTAAAGCCCTGAAAGGTCAAAAAAATG
32825179 ATGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTA
65 ATGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTA
* *
32825229 AAGCTTTGAGCATTAGCGGCGCTTTTTCAAAAACTCCACTAAAGCCCTGAAAGGT-AAAAAAATG
1 AAGCTCTGAGCATTAGCGGCGCTTTTT-AAAAACTCCGCTAAAGCCCTGAAAGGTCAAAAAAATG
32825293 ATGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTA
65 ATGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTA
32825343 AAGCTCTGAGCATTAGCGGCGCTTTTTTAAATAAGCT--GCTAAAGCCCTGAAAGGTCAAAAAAA
1 AAGCTCTGAGCATTAGCGGCGC-TTTTTAAA-AA-CTCCGCTAAAGCCCTGAAAGGTCAAAAAAA
* * *
32825406 TGATGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTTCTAAAAAATGTCGCTA
63 TGATGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTA
32825458 AAGC
1 AAGC
32825462 CTTAAAAGGT
Statistics
Matches: 215, Mismatches: 11, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
112 10 0.05
113 45 0.21
114 91 0.42
115 67 0.31
116 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (114 bp):
AAGCTCTGAGCATTAGCGGCGCTTTTTAAAAACTCCGCTAAAGCCCTGAAAGGTCAAAAAAATGA
TGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTA
Found at i:32825485 original size:187 final size:187
Alignment explanation
Indices: 32825244--32825635 Score: 583
Period size: 187 Copynumber: 2.1 Consensus size: 187
32825234 TTGAGCATTA
* * * * * *
32825244 GCGGCGCTTTTTCAAAAACT-CCACTAAAGCCCTGAAAGGTAAAAAAATGATGTCGTTGGGCTTA
1 GCGGCGCTTTTCCAAAAAATGTCGCTAAAGCCCTAAAAGGTAAAAAAACGATGTCGTTGGGCTTA
* *
32825308 GGTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGCTCTGAGCATTAGCGGCGCTTTTTTAA
66 GGTTTTTTGCGACGCTTTTCCAAAAAACGCCGCTAAAGCTCTGAGCATTAGCGGCGCTTTTTCAA
* * *
32825373 ATAA-GCTGCTAAAGCCCTGAAAGGTCAAAAAAATGATGTCGTTGGGCTTAGGTTTTTT
131 A-AATGCCGCTAAAGCACTGAAAGGTC-AAAAAACGATGTCGTTGGGCTTAGGTTTTTT
* * *
32825431 GCGGCGCTTTTCTAAAAAATGTCGCTAAAGCCTTAAAAGGT-CAAAAACGATGTCGTTGGGCTTA
1 GCGGCGCTTTTCCAAAAAATGTCGCTAAAGCCCTAAAAGGTAAAAAAACGATGTCGTTGGGCTTA
* * *
32825495 GGTTTTTTGCGACGCTTTTCCAAAAAGCGCCGGTAAAGCTTTGAGCATTAGCGGCGCTTTTTCAA
66 GGTTTTTTGCGACGCTTTTCCAAAAAACGCCGCTAAAGCTCTGAGCATTAGCGGCGCTTTTTCAA
*
32825560 AAATGCCGTTAAAGCACTGAAAGGTCAAAAAACGATGTCGTTGGGCTTAGGTTTTTT
131 AAATGCCGCTAAAGCACTGAAAGGTCAAAAAACGATGTCGTTGGGCTTAGGTTTTTT
32825617 GCGGCGCTTTTCCAAAAAA
1 GCGGCGCTTTTCCAAAAAA
32825636 CGCCACTAAA
Statistics
Matches: 184, Mismatches: 19, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
186 50 0.27
187 118 0.64
188 16 0.09
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (187 bp):
GCGGCGCTTTTCCAAAAAATGTCGCTAAAGCCCTAAAAGGTAAAAAAACGATGTCGTTGGGCTTA
GGTTTTTTGCGACGCTTTTCCAAAAAACGCCGCTAAAGCTCTGAGCATTAGCGGCGCTTTTTCAA
AAATGCCGCTAAAGCACTGAAAGGTCAAAAAACGATGTCGTTGGGCTTAGGTTTTTT
Found at i:32825494 original size:72 final size:72
Alignment explanation
Indices: 32825358--32825520 Score: 222
Period size: 72 Copynumber: 2.2 Consensus size: 72
32825348 CTGAGCATTA
* * * *
32825358 GCGGCGCTTTTTTAAATAAGCTGCTAAAGCCCTGAAAGGTCAAAAAAATGATGTCGTTGGGCTTA
1 GCGGCGCTTTTCTAAAAAAGCTGCTAAAGCCCTAAAAGGTC-AAAAAACGATGTCGTTGGGCTTA
32825423 GGTTTTTT
65 GGTTTTTT
*
32825431 GCGGCGCTTTTCTAAAAAATG-TCGCTAAAGCCTTAAAAGGTC-AAAAACGATGTCGTTGGGCTT
1 GCGGCGCTTTTCTAAAAAA-GCT-GCTAAAGCCCTAAAAGGTCAAAAAACGATGTCGTTGGGCTT
32825494 AGGTTTTTT
64 AGGTTTTTT
* *
32825503 GCGACGCTTTTCCAAAAA
1 GCGGCGCTTTTCTAAAAA
32825521 GCGCCGGTAA
Statistics
Matches: 81, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
72 45 0.56
73 18 0.22
74 18 0.22
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (72 bp):
GCGGCGCTTTTCTAAAAAAGCTGCTAAAGCCCTAAAAGGTCAAAAAACGATGTCGTTGGGCTTAG
GTTTTTT
Found at i:32825631 original size:114 final size:114
Alignment explanation
Indices: 32825431--32825766 Score: 487
Period size: 114 Copynumber: 2.9 Consensus size: 114
32825421 TAGGTTTTTT
* * *
32825431 GCGGCGCTTTTCTAAAAAATGTCGCTAAAGC-CTTAAAAGGTC-AAAAACGATGTCGTTGGGCTT
1 GCGGCGCTTTT-TCAAAAATGCCGCTAAAGCAC-TGAAAGGTCAAAAAACGATGTCGTTGGGCTT
* * * *
32825494 AGGTTTTTTGCGACGCTTTTCCAAAAAGCGCCGGTAAAGCTTTGAGCATTA
64 AGGTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGCTCTGAGCATTA
*
32825545 GCGGCGCTTTTTCAAAAATGCCGTTAAAGCACTGAAAGGTCAAAAAACGATGTCGTTGGGCTTAG
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAGCACTGAAAGGTCAAAAAACGATGTCGTTGGGCTTAG
*
32825610 GTTTTTTGCGGCGCTTTTCCAAAAAACGCCACTAAAGCTCTGAGCATTA
66 GTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGCTCTGAGCATTA
* * * *
32825659 GCGGCACTTTTTCAAAAACGCCGCTAAAGCACTGAAAGGTCAAAAAACGATGTTGTTGAGCTTAG
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAGCACTGAAAGGTCAAAAAACGATGTCGTTGGGCTTAG
* ** *
32825724 GTTTTTTACGGCGCTTTTTTAAAAAACGCCGCTAAAGCCCTGA
66 GTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGCTCTGA
32825767 AAGGTCAAAA
Statistics
Matches: 201, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
113 24 0.12
114 177 0.88
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (114 bp):
GCGGCGCTTTTTCAAAAATGCCGCTAAAGCACTGAAAGGTCAAAAAACGATGTCGTTGGGCTTAG
GTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGCTCTGAGCATTA
Found at i:32825696 original size:301 final size:299
Alignment explanation
Indices: 32825131--32825838 Score: 1091
Period size: 301 Copynumber: 2.4 Consensus size: 299
32825121 CTGAGAATTA
*
32825131 ACGGCGCTATTT-T-AAAAACGCCGCTAAAGCCCTGAAAGGTCAAAAACAATGTCGTTGGGCTTA
1 ACGGCGCT-TTTCTAAAAAACGCCGCTAAAGCCCTGAAAGGTCAAAAACGATGTCGTTGGGCTTA
32825194 GGTTTTTTGCGGCGCTTTTCCAAAAAACGCCGCTAAAGCTTTGAGCATTAGCGGCGCTTTTTCAA
65 GGTTTTTTGCGGCGCTTTTCC-AAAAACGCCGCTAAAGCTTTGAGCATTAGCGGCGCTTTTTCAA
* *
32825259 AAACTCCACTAAAGCCCTGAAAGGTAAAAAAATGATGTCGTTGGGCTTAGGTTTTTTGCGGCGCT
129 AAACTCCACTAAAGCACTGAAAGGTAAAAAAACGATGTCGTTGGGCTTAGGTTTTTTGCGGCGCT
* * * * *
32825324 TTTCCAAAAAACGCCGCTAAAGCTCTGAGCATTAGCGGCGCTTTTTTAAATAAGCTGCTAAAGCC
194 TTTCCAAAAAACGCCACTAAAGCTCTGAGCATTAGCGGCACTTTTTCAAATAAGCCGCTAAAGCA
* *
32825389 CTGAAAGGTCAAAAAAATGATGTCGTTGGGCTTAGGTTTTTT
259 CTGAAAGGTC-AAAAAACGATGTCGTTGAGCTTAGGTTTTTT
* * * * *
32825431 GCGGCGCTTTTCTAAAAAATGTCGCTAAAGCCTTAAAAGGTCAAAAACGATGTCGTTGGGCTTAG
1 ACGGCGCTTTTCTAAAAAACGCCGCTAAAGCCCTGAAAGGTCAAAAACGATGTCGTTGGGCTTAG
* *
32825496 GTTTTTTGCGACGCTTTTCCAAAAAGCGCCGGTAAAGCTTTGAGCATTAGCGGCGCTTTTTCAAA
66 GTTTTTTGCGGCGCTTTTCCAAAAA-CGCCGCTAAAGCTTTGAGCATTAGCGGCGCTTTTTCAAA
** *
32825561 AA-TGCCGTTAAAGCACTGAAAGGTCAAAAAACGATGTCGTTGGGCTTAGGTTTTTTGCGGCGCT
130 AACT-CCACTAAAGCACTGAAAGGTAAAAAAACGATGTCGTTGGGCTTAGGTTTTTTGCGGCGCT
32825625 TTTCCAAAAAACGCCACTAAAGCTCTGAGCATTAGCGGCACTTTTTCAAA-AACGCCGCTAAAGC
194 TTTCCAAAAAACGCCACTAAAGCTCTGAGCATTAGCGGCACTTTTTCAAATAA-GCCGCTAAAGC
*
32825689 ACTGAAAGGTCAAAAAACGATGTTGTTGAGCTTAGGTTTTTT
258 ACTGAAAGGTCAAAAAACGATGTCGTTGAGCTTAGGTTTTTT
* *
32825731 ACGGCGCTTTTTTAAAAAACGCCGCTAAAGCCCTGAAAGGTCAAAAAATGATGTCGTTGGGCTTA
1 ACGGCGCTTTTCTAAAAAACGCCGCTAAAGCCCTGAAAGGTC-AAAAACGATGTCGTTGGGCTTA
* * *
32825796 GGTTTTTTGCGGCGCTTTTTCAAAAATGCCGCTAAAGCCTTGA
65 GGTTTTTTGCGGCGCTTTTCCAAAAACGCCGCTAAAGCTTTGA
32825839 AAGGTCAAAA
Statistics
Matches: 369, Mismatches: 33, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
299 3 0.01
300 94 0.25
301 272 0.74
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (299 bp):
ACGGCGCTTTTCTAAAAAACGCCGCTAAAGCCCTGAAAGGTCAAAAACGATGTCGTTGGGCTTAG
GTTTTTTGCGGCGCTTTTCCAAAAACGCCGCTAAAGCTTTGAGCATTAGCGGCGCTTTTTCAAAA
ACTCCACTAAAGCACTGAAAGGTAAAAAAACGATGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTT
TCCAAAAAACGCCACTAAAGCTCTGAGCATTAGCGGCACTTTTTCAAATAAGCCGCTAAAGCACT
GAAAGGTCAAAAAACGATGTCGTTGAGCTTAGGTTTTTT
Found at i:32825748 original size:72 final size:71
Alignment explanation
Indices: 32825659--32825888 Score: 352
Period size: 72 Copynumber: 3.2 Consensus size: 71
32825649 CTGAGCATTA
* * *
32825659 GCGGCACTTTTTCAAAAACGCCGCTAAAGCACTGAAAGGTCAAAAAACGATGTTGTTGAGCTTAG
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGC-CTGAAAGGTCAAAAAACGATGTCGTTGGGCTTAG
32825724 GTTTTTT
65 GTTTTTT
* * *
32825731 ACGGCGCTTTTTTAAAAAACGCCGCTAAAGCCCTGAAAGGTCAAAAAATGATGTCGTTGGGCTTA
1 GCGGCGC-TTTTTCAAAAACGCCGCTAAAG-CCTGAAAGGTCAAAAAACGATGTCGTTGGGCTTA
32825796 GGTTTTTT
64 GGTTTTTT
*
32825804 GCGGCGCTTTTTCAAAAATGCCGCTAAAGCCTTGAAAGGTCAAAAAACGATGTCGTTGGGCTTAG
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCC-TGAAAGGTCAAAAAACGATGTCGTTGGGCTTAG
32825869 GTTTTTT
65 GTTTTTT
*
32825876 GCGACGCTTTTTC
1 GCGGCGCTTTTTC
32825889 TTTAGTGACG
Statistics
Matches: 144, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
71 2 0.01
72 76 0.53
73 65 0.45
74 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30
Consensus pattern (71 bp):
GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCTGAAAGGTCAAAAAACGATGTCGTTGGGCTTAGG
TTTTTT
Found at i:32825750 original size:73 final size:72
Alignment explanation
Indices: 32825666--32825887 Score: 347
Period size: 73 Copynumber: 3.1 Consensus size: 72
32825656 TTAGCGGCAC
* *
32825666 TTTTTCAAAAACGCCGCTAAAGCACTGAAAGGTCAAAAAACGATGTTGTTGAGCTTAGGTTTTTT
1 TTTTTCAAAAACGCCGCTAAAGC-CTGAAAGGTCAAAAAACGATGTCGTTGGGCTTAGGTTTTTT
*
32825731 ACGGCGCT
65 GCGGCGCT
* *
32825739 TTTTTAAAAAACGCCGCTAAAGCCCTGAAAGGTCAAAAAATGATGTCGTTGGGCTTAGGTTTTTT
1 TTTTTCAAAAACGCCGCTAAAG-CCTGAAAGGTCAAAAAACGATGTCGTTGGGCTTAGGTTTTTT
32825804 GCGGCGC-
65 GCGGCGCT
*
32825811 TTTTTCAAAAATGCCGCTAAAGCCTTGAAAGGTCAAAAAACGATGTCGTTGGGCTTAGGTTTTTT
1 TTTTTCAAAAACGCCGCTAAAGCC-TGAAAGGTCAAAAAACGATGTCGTTGGGCTTAGGTTTTTT
*
32825876 GCGACGCT
65 GCGGCGCT
32825884 TTTT
1 TTTT
32825888 CTTTAGTGAC
Statistics
Matches: 137, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
71 2 0.01
72 65 0.47
73 69 0.50
74 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (72 bp):
TTTTTCAAAAACGCCGCTAAAGCCTGAAAGGTCAAAAAACGATGTCGTTGGGCTTAGGTTTTTTG
CGGCGCT
Found at i:32827391 original size:43 final size:43
Alignment explanation
Indices: 32827334--32827543 Score: 201
Period size: 43 Copynumber: 4.9 Consensus size: 43
32827324 TTACGGAGAA
* *
32827334 AAACGCCGCAAAAGAACAAGACCTTTAGCAGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCCAC
* * * * * * *
32827377 AAACGTCGCGAAAGACCAAGACCTTTTGTGGCACTTCTCCCAC
1 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCCAC
* * *
32827420 AAACGCCGCTAAAG-ACTATGACCTTTAGCGGTGCTTTCCCCAC
1 AAACGCCGCTAAAGAAC-AAGACCTTTAGCGGCGCTTTTCCCAC
* ** *
32827463 AAACGCTGCTAAAGGCCAAGACCTTTAGCGGTGCTTTT-CCATC
1 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCCA-C
* * *
32827506 AAACGCCGCTAAA-AACCATGACCTTTAGTGGCGTTTTT
1 AAACGCCGCTAAAGAA-CAAGACCTTTAGCGGCGCTTTT
32827544 TTAAAAACGC
Statistics
Matches: 134, Mismatches: 29, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
42 4 0.03
43 129 0.96
44 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCCAC
Found at i:32827444 original size:86 final size:85
Alignment explanation
Indices: 32827334--32827533 Score: 224
Period size: 86 Copynumber: 2.3 Consensus size: 85
32827324 TTACGGAGAA
* * *
32827334 AAACGCCGCAAAAGAACAAGACCTTTAGCAGCGCTTTTCCCACAAACG-TCGCGAAAGACCAAGA
1 AAACGCCGCTAAAG-ACATGACCTTTAGCAGCGCTTTCCCCACAAACGCT-GCGAAAGACCAAGA
* *
32827398 CCTTTTGTGGCACTTCTCCCA-C
64 CCTTTAGCGGCACTT-TCCCATC
* * * *
32827420 AAACGCCGCTAAAGACTATGACCTTTAGCGGTGCTTTCCCCACAAACGCTGCTAAAGGCCAAGAC
1 AAACGCCGCTAAAGAC-ATGACCTTTAGCAGCGCTTTCCCCACAAACGCTGCGAAAGACCAAGAC
** *
32827485 CTTTAGCGGTGCTTTTCCATC
65 CTTTAGCGGCACTTTCCCATC
*
32827506 AAACGCCGCTAAAAACCATGACCTTTAG
1 AAACGCCGCTAAAGA-CATGACCTTTAG
32827534 TGGCGTTTTT
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
85 6 0.06
86 89 0.92
87 2 0.02
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (85 bp):
AAACGCCGCTAAAGACATGACCTTTAGCAGCGCTTTCCCCACAAACGCTGCGAAAGACCAAGACC
TTTAGCGGCACTTTCCCATC
Found at i:32833438 original size:9 final size:9
Alignment explanation
Indices: 32833424--32833606 Score: 84
Period size: 9 Copynumber: 21.3 Consensus size: 9
32833414 AAATTAAATG
32833424 AGTTATGTA
1 AGTTATGTA
32833433 AGTTATGATA
1 AGTTATG-TA
* * *
32833443 TGATATAT-
1 AGTTATGTA
*
32833451 ATTTATGT-
1 AGTTATGTA
*
32833459 A-TTAAGTA
1 AGTTATGTA
*
32833467 AATTATGTA
1 AGTTATGTA
32833476 AGTTATGT-
1 AGTTATGTA
*
32833484 A-TTATATA
1 AGTTATGTA
*
32833492 AGTTATTTA
1 AGTTATGTA
32833501 AGTTATGT-
1 AGTTATGTA
32833509 A-TTATGTA
1 AGTTATGTA
**
32833517 ACCTATGTA
1 AGTTATGTA
32833526 AGTTATGTA
1 AGTTATGTA
**
32833535 AGTGCTGT-
1 AGTTATGTA
32833543 A-TTATGTA
1 AGTTATGTA
**
32833551 AGGCAAAT-TA
1 A-G-TTATGTA
32833561 AGTTATGTA
1 AGTTATGTA
* *
32833570 GGCTATGT-
1 AGTTATGTA
*
32833578 A-TTATGCA
1 AGTTATGTA
*
32833586 AGTTATTTA
1 AGTTATGTA
*
32833595 AGTTGTGTA
1 AGTTATGTA
32833604 AGT
1 AGT
32833607 GTTGTATTAT
Statistics
Matches: 127, Mismatches: 33, Indels: 28
0.68 0.18 0.15
Matches are distributed among these distances:
7 24 0.19
8 15 0.12
9 77 0.61
10 9 0.07
11 2 0.02
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.44
Consensus pattern (9 bp):
AGTTATGTA
Done.