Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 110 of 205
Found at i:32833484 original size:25 final size:25
Alignment explanation
Indices: 32833453--32833534 Score: 103
Period size: 25 Copynumber: 3.3 Consensus size: 25
32833443 TGATATATAT
32833453 TTATGTATTAAGTAAATTATGTAAG
1 TTATGTATTAAGTAAATTATGTAAG
* *
32833478 TTATGTATTATA-TAAGTTATTTAAG
1 TTATGTATTA-AGTAAATTATGTAAG
* **
32833503 TTATGTATTATGTAACCTATGTAAG
1 TTATGTATTAAGTAAATTATGTAAG
32833528 TTATGTA
1 TTATGTA
32833535 AGTGCTGTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
25 48 0.98
26 1 0.02
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (25 bp):
TTATGTATTAAGTAAATTATGTAAG
Found at i:32833597 original size:69 final size:69
Alignment explanation
Indices: 32833490--32833644 Score: 220
Period size: 69 Copynumber: 2.2 Consensus size: 69
32833480 ATGTATTATA
* * * *
32833490 TAAGTTATTTAAGTTATGTATTATGTAACCTATGTAAGTTATGTAAGTGCTGTATTATGTAAGGC
1 TAAGTTATGTAGGCTATGTATTATGCAACCTATGTAAGTTATGTAAGTGCTGTATTATGTAAGGC
32833555 AAAT
66 AAAT
** * * *
32833559 TAAGTTATGTAGGCTATGTATTATGCAAGTTATTTAAGTTGTGTAAGTGTTGTATTATGTAAGGC
1 TAAGTTATGTAGGCTATGTATTATGCAACCTATGTAAGTTATGTAAGTGCTGTATTATGTAAGGC
32833624 AAAT
66 AAAT
*
32833628 TAAGTTATGTAGTCTAT
1 TAAGTTATGTAGGCTAT
32833645 CCCGCAACAT
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 76 1.00
ACGTcount: A:0.32, C:0.05, G:0.21, T:0.43
Consensus pattern (69 bp):
TAAGTTATGTAGGCTATGTATTATGCAACCTATGTAAGTTATGTAAGTGCTGTATTATGTAAGGC
AAAT
Found at i:32834105 original size:25 final size:25
Alignment explanation
Indices: 32834077--32834158 Score: 94
Period size: 25 Copynumber: 3.3 Consensus size: 25
32834067 TGATATATAT
*
32834077 TTATATATTAAGTAAATTATGTAAG
1 TTATGTATTAAGTAAATTATGTAAG
* *
32834102 TTATGTATTATA-TAAGTTATTTAAG
1 TTATGTATTA-AGTAAATTATGTAAG
* **
32834127 TTATGTATTATGTAACCTATGTAAG
1 TTATGTATTAAGTAAATTATGTAAG
32834152 TTATGTA
1 TTATGTA
32834159 AGTGCTGTAT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
25 47 0.98
26 1 0.02
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.48
Consensus pattern (25 bp):
TTATGTATTAAGTAAATTATGTAAG
Found at i:32834203 original size:69 final size:69
Alignment explanation
Indices: 32834114--32834452 Score: 572
Period size: 69 Copynumber: 4.9 Consensus size: 69
32834104 ATGTATTATA
* * ** * * *
32834114 TAAGTTATTTAAGT-TATGTATTATGTAACCTATGTAAGTTATGTAAGTGCTGTATTATGTAAGG
1 TAAGTTATGT-AGTCTATGTATTATGCAAGTTATTTAAGTTGTGTAAGTGTTGTATTATGTAAGG
32834178 CAAAT
65 CAAAT
*
32834183 TAAGTTATGTAGGCTATGTATTATGCAAGTTATTTAAGTTGTGTAAGTGTTGTATTATGTAAGGC
1 TAAGTTATGTAGTCTATGTATTATGCAAGTTATTTAAGTTGTGTAAGTGTTGTATTATGTAAGGC
32834248 AAAT
66 AAAT
32834252 TAAGTTATGTAGTCTATGTATTATGCAAGTTATTTAAGTTGTGTAAGTGTTGTATTATGTAAGGC
1 TAAGTTATGTAGTCTATGTATTATGCAAGTTATTTAAGTTGTGTAAGTGTTGTATTATGTAAGGC
32834317 AAAT
66 AAAT
*
32834321 TAAGTTATGTAGTCTATGTATTATGGAAGTTATTTAAGTTGTGTAAGTGTTGTATTATGTAAGGC
1 TAAGTTATGTAGTCTATGTATTATGCAAGTTATTTAAGTTGTGTAAGTGTTGTATTATGTAAGGC
32834386 AAAT
66 AAAT
*
32834390 TAAGTTATGTAGTCTATGTATTATGGAAGTTATTTAAGTTGTGTAAGTGTTGTATTATGTAAG
1 TAAGTTATGTAGTCTATGTATTATGCAAGTTATTTAAGTTGTGTAAGTGTTGTATTATGTAAG
32834453 TAAGTTATGT
Statistics
Matches: 259, Mismatches: 10, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
68 2 0.01
69 257 0.99
ACGTcount: A:0.31, C:0.04, G:0.22, T:0.43
Consensus pattern (69 bp):
TAAGTTATGTAGTCTATGTATTATGCAAGTTATTTAAGTTGTGTAAGTGTTGTATTATGTAAGGC
AAAT
Found at i:32834207 original size:624 final size:624
Alignment explanation
Indices: 32833019--32834268 Score: 2392
Period size: 624 Copynumber: 2.0 Consensus size: 624
32833009 ATATTAATGC
32833019 ATCCCGCAACATACCTTCCATGTCATCCCCTCCAACAGACTGATAGTAAGCAGTACCAGGATAAG
1 ATCCCGCAACATACCTTCCATGTCATCCCCTCCAACAGACTGATAGTAAGCAGTACCAGGATAAG
32833084 ATACATCCATCGTTGAAGAGGAGGTACTAGGCGGGCATTCTCCATGAAAAAGCCATTTTTTATAA
66 ATACATCCATCGTTGAAGAGGAGGTACTAGGCGGGCATTCTCCATGAAAAAGCCATTTTTTATAA
* * * *
32833149 CCCCAAACAAAACCATCAATAATTAGATGCTCGTATACAACTTCACGATAATGCTATTTTATTTT
131 CCCCAAACAAAACCATCAACAATTAGATGCTCGTATACAACTTCACGATAATGCCAGTTTATGTT
32833214 GACACACTTGTTACAGGGGCAAAGAATCATGTTCTCTTGGCTTGCATGTTGAAATGAAAAATTTA
196 GACACACTTGTTACAGGGGCAAAGAATCATGTTCTCTTGGCTTGCATGTTGAAATGAAAAATTTA
* *
32833279 GAAAACTCTGAACTCCATTTCAATAATTGTTGCTTACCCTTGACAAATTCATCCAAGACTGGTCT
261 GAAAACTCTGAACTCCATTTCAATAACTGTTGCTTACCCTTGACAAATTCATCCAAGACCGGTCT
*
32833344 ATTTCTTAATTCTTGAAGTCTGATTTCCACCAGAAAATACAAGGGTACGTAAGTTGTTCACTTAT
326 ATTTCTTAATTCTTGAAGTCTGATTTCCACCAGAAAATACAAGGGTACATAAGTTGTTCACTTAT
*
32833409 ATTTAAAATTAAATGAGTTATGTAAGTTATGATATGATATATATTTATGTATTAAGTAAATTATG
391 ATTTAAAATTAAATGAGTTATGTAAGTTATGATATGATATATATTTATATATTAAGTAAATTATG
32833474 TAAGTTATGTATTATATAAGTTATTTAAGTTATGTATTATGTAACCTATGTAAGTTATGTAAGTG
456 TAAGTTATGTATTATATAAGTTATTTAAGTTATGTATTATGTAACCTATGTAAGTTATGTAAGTG
32833539 CTGTATTATGTAAGGCAAATTAAGTTATGTAGGCTATGTATTATGCAAGTTATTTAAGTTGTGTA
521 CTGTATTATGTAAGGCAAATTAAGTTATGTAGGCTATGTATTATGCAAGTTATTTAAGTTGTGTA
32833604 AGTGTTGTATTATGTAAGGCAAATTAAGTTATGTAGTCT
586 AGTGTTGTATTATGTAAGGCAAATTAAGTTATGTAGTCT
* *
32833643 ATCCCGCAACATACCTTTCATGTCATCTCCTCCAACAGACTGATAGTAAGCAGTACCAGGATAAG
1 ATCCCGCAACATACCTTCCATGTCATCCCCTCCAACAGACTGATAGTAAGCAGTACCAGGATAAG
32833708 ATACATCCATCGTTGAAGAGGAGGTACTAGGCGGGCATTCTCCATGAAAAAGCCATTTTTTATAA
66 ATACATCCATCGTTGAAGAGGAGGTACTAGGCGGGCATTCTCCATGAAAAAGCCATTTTTTATAA
*
32833773 CCCCAAACAAACCCATCAACAATTAGATGCTCGTATACAACTTCACGATAATGCCAGTTTATGTT
131 CCCCAAACAAAACCATCAACAATTAGATGCTCGTATACAACTTCACGATAATGCCAGTTTATGTT
*
32833838 GACACACTTGTTACAGGGGTAAAGAATCATGTTCTCTTGGCTTGCATGTTGAAATGAAAAATTTA
196 GACACACTTGTTACAGGGGCAAAGAATCATGTTCTCTTGGCTTGCATGTTGAAATGAAAAATTTA
32833903 GAAAACTCTGAACTCCATTTCAATAACTGTTGCTTACCCTTGACAAATTCATCCAAGACCGGTCT
261 GAAAACTCTGAACTCCATTTCAATAACTGTTGCTTACCCTTGACAAATTCATCCAAGACCGGTCT
32833968 ATTTCTTAATTCTTGAAGTCTGATTTCCACCAGAAAATACAAGGGTACATAAGTTGTTCACTTAT
326 ATTTCTTAATTCTTGAAGTCTGATTTCCACCAGAAAATACAAGGGTACATAAGTTGTTCACTTAT
32834033 ATTTAAAATTAAATGAGTTATGTAAGTTATGATATGATATATATTTATATATTAAGTAAATTATG
391 ATTTAAAATTAAATGAGTTATGTAAGTTATGATATGATATATATTTATATATTAAGTAAATTATG
32834098 TAAGTTATGTATTATATAAGTTATTTAAGTTATGTATTATGTAACCTATGTAAGTTATGTAAGTG
456 TAAGTTATGTATTATATAAGTTATTTAAGTTATGTATTATGTAACCTATGTAAGTTATGTAAGTG
32834163 CTGTATTATGTAAGGCAAATTAAGTTATGTAGGCTATGTATTATGCAAGTTATTTAAGTTGTGTA
521 CTGTATTATGTAAGGCAAATTAAGTTATGTAGGCTATGTATTATGCAAGTTATTTAAGTTGTGTA
32834228 AGTGTTGTATTATGTAAGGCAAATTAAGTTATGTAGTCT
586 AGTGTTGTATTATGTAAGGCAAATTAAGTTATGTAGTCT
32834267 AT
1 AT
32834269 GTATTATGCA
Statistics
Matches: 614, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
624 614 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (624 bp):
ATCCCGCAACATACCTTCCATGTCATCCCCTCCAACAGACTGATAGTAAGCAGTACCAGGATAAG
ATACATCCATCGTTGAAGAGGAGGTACTAGGCGGGCATTCTCCATGAAAAAGCCATTTTTTATAA
CCCCAAACAAAACCATCAACAATTAGATGCTCGTATACAACTTCACGATAATGCCAGTTTATGTT
GACACACTTGTTACAGGGGCAAAGAATCATGTTCTCTTGGCTTGCATGTTGAAATGAAAAATTTA
GAAAACTCTGAACTCCATTTCAATAACTGTTGCTTACCCTTGACAAATTCATCCAAGACCGGTCT
ATTTCTTAATTCTTGAAGTCTGATTTCCACCAGAAAATACAAGGGTACATAAGTTGTTCACTTAT
ATTTAAAATTAAATGAGTTATGTAAGTTATGATATGATATATATTTATATATTAAGTAAATTATG
TAAGTTATGTATTATATAAGTTATTTAAGTTATGTATTATGTAACCTATGTAAGTTATGTAAGTG
CTGTATTATGTAAGGCAAATTAAGTTATGTAGGCTATGTATTATGCAAGTTATTTAAGTTGTGTA
AGTGTTGTATTATGTAAGGCAAATTAAGTTATGTAGTCT
Found at i:32834237 original size:34 final size:34
Alignment explanation
Indices: 32834130--32834453 Score: 280
Period size: 34 Copynumber: 9.4 Consensus size: 34
32834120 ATTTAAGTTA
** * * *
32834130 TGTATTATGTAACCTATGTAAGTTATGTAAGTGC
1 TGTATTATGTAAGTTATTTAAGTTGTGTAAGTGT
** * *
32834164 TGTATTATGTAAGGCAAATTAAGTTATGT-AG-GCT
1 TGTATTATGTAA-GTTATTTAAGTTGTGTAAGTG-T
*
32834198 ATGTATTATGCAAGTTATTTAAGTTGTGTAAGTGT
1 -TGTATTATGTAAGTTATTTAAGTTGTGTAAGTGT
** * * *
32834233 TGTATTATGTAAGGCAAATTAAGTTATGT-AGTCT
1 TGTATTATGTAA-GTTATTTAAGTTGTGTAAGTGT
*
32834267 ATGTATTATGCAAGTTATTTAAGTTGTGTAAGTGT
1 -TGTATTATGTAAGTTATTTAAGTTGTGTAAGTGT
** * * *
32834302 TGTATTATGTAAGGCAAATTAAGTTATGT-AGTCT
1 TGTATTATGTAA-GTTATTTAAGTTGTGTAAGTGT
*
32834336 ATGTATTATGGAAGTTATTTAAGTTGTGTAAGTGT
1 -TGTATTATGTAAGTTATTTAAGTTGTGTAAGTGT
** * * *
32834371 TGTATTATGTAAGGCAAATTAAGTTATGT-AGTCT
1 TGTATTATGTAA-GTTATTTAAGTTGTGTAAGTGT
*
32834405 ATGTATTATGGAAGTTATTTAAGTTGTGTAAGTGT
1 -TGTATTATGTAAGTTATTTAAGTTGTGTAAGTGT
32834440 TGTATTATGTAAGT
1 TGTATTATGTAAGT
32834454 AAGTTATGTA
Statistics
Matches: 229, Mismatches: 47, Indels: 28
0.75 0.15 0.09
Matches are distributed among these distances:
33 1 0.00
34 120 0.52
35 107 0.47
36 1 0.00
ACGTcount: A:0.30, C:0.04, G:0.23, T:0.43
Consensus pattern (34 bp):
TGTATTATGTAAGTTATTTAAGTTGTGTAAGTGT
Found at i:32835276 original size:17 final size:16
Alignment explanation
Indices: 32835256--32835296 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
32835246 TAAATATTCA
32835256 AATTTATAAATACTATC
1 AATTT-TAAATACTATC
32835273 AA-TTTAAATACTATC
1 AATTTTAAATACTATC
*
32835288 AATATTAAA
1 AATTTTAAA
32835297 ATTTATAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 13 0.59
16 7 0.32
17 2 0.09
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (16 bp):
AATTTTAAATACTATC
Found at i:32835282 original size:15 final size:16
Alignment explanation
Indices: 32835262--32835296 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
32835252 TTCAAATTTA
32835262 TAAATACTATCAAT-T
1 TAAATACTATCAATAT
32835277 TAAATACTATCAATAT
1 TAAATACTATCAATAT
32835293 TAAA
1 TAAA
32835297 ATTTATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.37
Consensus pattern (16 bp):
TAAATACTATCAATAT
Found at i:32837085 original size:16 final size:15
Alignment explanation
Indices: 32837066--32837103 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
32837056 TAAAAACACT
*
32837066 AAAAAAACAAAAGAA
1 AAAAAAAAAAAAGAA
32837081 AAAAAGAAAAAAAGAA
1 AAAAA-AAAAAAAGAA
32837097 AAAAAAA
1 AAAAAAA
32837104 TAAATGAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAGAA
Found at i:32837098 original size:7 final size:8
Alignment explanation
Indices: 32837074--32837101 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
32837064 CTAAAAAAAC
32837074 AAAAGAAA
1 AAAAGAAA
32837082 AAAAGAAA
1 AAAAGAAA
32837090 AAAAGAAA
1 AAAAGAAA
32837098 AAAA
1 AAAA
32837102 AATAAATGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (8 bp):
AAAAGAAA
Found at i:32841376 original size:39 final size:39
Alignment explanation
Indices: 32841312--32841595 Score: 311
Period size: 39 Copynumber: 7.3 Consensus size: 39
32841302 TTTTTTCCCA
* * *
32841312 TGTGGTGGTTCCTCTTCCCTGCCACCAGGTCCAGGGTGG
1 TGTGGTGGCTCCTCTCCCCTACCACCAGGTCCAGGGTGG
* *
32841351 TGTGGTGGCTCCTCTCCACTACCACCAGGTCCTGGGTGG
1 TGTGGTGGCTCCTCTCCCCTACCACCAGGTCCAGGGTGG
* * *
32841390 TGTGGTGGCTCCTCTCCTCTACCACCAGGTCCGGGGTGA
1 TGTGGTGGCTCCTCTCCCCTACCACCAGGTCCAGGGTGG
* * *
32841429 TGTGGTGGCTCATC-CCCCATACCACTAGGTCCGGGGTGG
1 TGTGGTGGCTCCTCTCCCC-TACCACCAGGTCCAGGGTGG
* * * * *
32841468 TGTGGTGGCTTCTCTCTCCTATCACCAGGTCCGGGGTGA
1 TGTGGTGGCTCCTCTCCCCTACCACCAGGTCCAGGGTGG
* * * *
32841507 TGTGGTGGTTCAT-TCCCCATACCACTAGGTTCAGGGTGG
1 TGTGGTGGCTCCTCTCCCC-TACCACCAGGTCCAGGGTGG
* * * * *
32841546 TGTGGTGGCTCATCCCCCCAACCACTAGGTCCAGGGTGT
1 TGTGGTGGCTCCTCTCCCCTACCACCAGGTCCAGGGTGG
32841585 TGTGGTGGCTC
1 TGTGGTGGCTC
32841596 ATTATCGTGG
Statistics
Matches: 209, Mismatches: 32, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
38 7 0.03
39 195 0.93
40 7 0.03
ACGTcount: A:0.11, C:0.30, G:0.32, T:0.27
Consensus pattern (39 bp):
TGTGGTGGCTCCTCTCCCCTACCACCAGGTCCAGGGTGG
Found at i:32841530 original size:117 final size:117
Alignment explanation
Indices: 32841333--32841595 Score: 352
Period size: 117 Copynumber: 2.2 Consensus size: 117
32841323 CTCTTCCCTG
* * *
32841333 CCACCAGGTCCAGGGTGGTGTGGTGGCTCCTCTCCACTACCACCAGGTCCTGGGTGGTGTGGTGG
1 CCACTAGGTCCAGGGTGGTGTGGTGGCTCCTCTCCACTACCACCAGGTCCGGGGTGATGTGGTGG
* * *
32841398 CTCCTCTCCTCTACCACCAGGTCCGGGGTGATGTGGTGGCTCAT-CCCCCATA
66 CTCATCTCCCCTACCACCAGGTCCAGGGTGATGTGGTGGCTCATCCCCCCA-A
* * *
32841450 CCACTAGGTCCGGGGTGGTGTGGTGGCTTCTCTCTC-CTATCACCAGGTCCGGGGTGATGTGGTG
1 CCACTAGGTCCAGGGTGGTGTGGTGGCTCCTCTC-CACTACCACCAGGTCCGGGGTGATGTGGTG
* * * *
32841514 GTTCAT-TCCCCATACCACTAGGTTCAGGGTGGTGTGGTGGCTCATCCCCCCAA
65 GCTCATCTCCCC-TACCACCAGGTCCAGGGTGATGTGGTGGCTCATCCCCCCAA
*
32841567 CCACTAGGTCCAGGGTGTTGTGGTGGCTC
1 CCACTAGGTCCAGGGTGGTGTGGTGGCTC
32841596 ATTATCGTGG
Statistics
Matches: 127, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
116 4 0.03
117 116 0.91
118 7 0.06
ACGTcount: A:0.12, C:0.30, G:0.32, T:0.26
Consensus pattern (117 bp):
CCACTAGGTCCAGGGTGGTGTGGTGGCTCCTCTCCACTACCACCAGGTCCGGGGTGATGTGGTGG
CTCATCTCCCCTACCACCAGGTCCAGGGTGATGTGGTGGCTCATCCCCCCAA
Found at i:32843803 original size:15 final size:15
Alignment explanation
Indices: 32843785--32843832 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
32843775 GATGTTTCTA
32843785 AATATATTTCATAAT
1 AATATATTTCATAAT
32843800 AATATATTTC-T-A-
1 AATATATTTCATAAT
*
32843812 AATA-AATTCATAAT
1 AATATATTTCATAAT
32843826 AATATAT
1 AATATAT
32843833 ATTTTAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
11 4 0.15
12 5 0.19
13 2 0.07
14 5 0.19
15 11 0.41
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (15 bp):
AATATATTTCATAAT
Found at i:32843821 original size:26 final size:27
Alignment explanation
Indices: 32843779--32843832 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
32843769 AAAATAGATG
*
32843779 TTTCTAAATATATTTCATAATAATATA
1 TTTCTAAATATAATTCATAATAATATA
32843806 TTTCTAAATA-AATTCATAATAATATA
1 TTTCTAAATATAATTCATAATAATATA
32843832 T
1 T
32843833 ATTTTAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 16 0.62
27 10 0.38
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46
Consensus pattern (27 bp):
TTTCTAAATATAATTCATAATAATATA
Found at i:32855033 original size:647 final size:647
Alignment explanation
Indices: 32853799--32855094 Score: 2583
Period size: 647 Copynumber: 2.0 Consensus size: 647
32853789 CATAGTATAT
32853799 GCAAACATTGAGGATGAGAAATCGACTTCAGAGGGAAAAAGCTGAAAGGTTAAGTTTGTAATATA
1 GCAAACATTGAGGATGAGAAATCGACTTCAGAGGGAAAAAGCTGAAAGGTTAAGTTTGTAATATA
32853864 AGGGCCAAGTATTAGTGGTCGATTAGAGCGTAAAATAGCATGAAAGTTCAATGCAAACCAATATC
66 AGGGCCAAGTATTAGTGGTCGATTAGAGCGTAAAATAGCATGAAAGTTCAATGCAAACCAATATC
32853929 CTAAATTAATTTTAAATCCAGAATGCATACACCACAAAAAAAATTCAATTTTATTTAAAATAGAT
131 CTAAATTAATTTTAAATCCAGAATGCATACACCACAAAAAAAATTCAATTTTATTTAAAATAGAT
32853994 GACTAATTATTTCGTCCTGAAAAACTAAAAATTAAAAATCGATGAATATATCTCAAAGCGGGTTC
196 GACTAATTATTTCGTCCTGAAAAACTAAAAATTAAAAATCGATGAATATATCTCAAAGCGGGTTC
32854059 ACGCACCAACAATCCTTAGAGGTCTTTGGATTATAACATTGATTTCTAGAATGAGTTAAAGTACA
261 ACGCACCAACAATCCTTAGAGGTCTTTGGATTATAACATTGATTTCTAGAATGAGTTAAAGTACA
32854124 ATAAACATCTTGAGCATCAAAGTAGATACGAACTTGCTTTTGTTGTCGAAATTGAGTCGTAAAGT
326 ATAAACATCTTGAGCATCAAAGTAGATACGAACTTGCTTTTGTTGTCGAAATTGAGTCGTAAAGT
32854189 TACCCGATTGTTAAATTAAGTATTGAAACTAAAGTTAAACAAAATGGCTATTTTAGAAGCTGATG
391 TACCCGATTGTTAAATTAAGTATTGAAACTAAAGTTAAACAAAATGGCTATTTTAGAAGCTGATG
32854254 GTTGAAAAAAAAAGAGTTTGTTTAGAAAATAAGTTGATGAAAAATATGGATTGTGAACTTAAAAC
456 GTTGAAAAAAAAAGAGTTTGTTTAGAAAATAAGTTGATGAAAAATATGGATTGTGAACTTAAAAC
32854319 AAGAATGAACCCTTAATAAAGATTAAGGACTCGATTCTTATAAGTTTTAAGGTGGATGGTGGATA
521 AAGAATGAACCCTTAATAAAGATTAAGGACTCGATTCTTATAAGTTTTAAGGTGGATGGTGGATA
32854384 GTTGGATAGAATCGTGACCCACTATCTAGCAAGATAGGAACCAGACAATATGAAGGGTGAAC
586 GTTGGATAGAATCGTGACCCACTATCTAGCAAGATAGGAACCAGACAATATGAAGGGTGAAC
*
32854446 GCAAACATTGAGGATGAGAAATCGACTTCAGAGGGAAAAAGTTGAAAGGTTAAGTTTGTAATATA
1 GCAAACATTGAGGATGAGAAATCGACTTCAGAGGGAAAAAGCTGAAAGGTTAAGTTTGTAATATA
32854511 AGGGCCAAGTATTAGTGGTCGATTAGAGCGTAAAATAGCATGAAAGTTCAATGCAAACCAATATC
66 AGGGCCAAGTATTAGTGGTCGATTAGAGCGTAAAATAGCATGAAAGTTCAATGCAAACCAATATC
32854576 CTAAATTAATTTTAAATCCAGAATGCATACACCACAAAAAAAATTCAATTTTATTTAAAATAGAT
131 CTAAATTAATTTTAAATCCAGAATGCATACACCACAAAAAAAATTCAATTTTATTTAAAATAGAT
32854641 GACTAATTATTTCGTCCTGAAAAACTAAAAATTAAAAATCGATGAATATATCTCAAAGCGGGTTC
196 GACTAATTATTTCGTCCTGAAAAACTAAAAATTAAAAATCGATGAATATATCTCAAAGCGGGTTC
32854706 ACGCACCAACAATCCTTAGAGGTCTTTGGATTATAACATTGATTTCTAGAATGAGTTAAAGTACA
261 ACGCACCAACAATCCTTAGAGGTCTTTGGATTATAACATTGATTTCTAGAATGAGTTAAAGTACA
32854771 ATAAACATCTTGAGCATCAAAGTAGATACGAACTTGCTTTTGTTGTCGAAATTGAGTCGTAAAGT
326 ATAAACATCTTGAGCATCAAAGTAGATACGAACTTGCTTTTGTTGTCGAAATTGAGTCGTAAAGT
32854836 TACCCGATTGTTAAATTAAGTATTGAAACTAAAGTTAAACAAAATGGCTATTTTAGAAGCTGATG
391 TACCCGATTGTTAAATTAAGTATTGAAACTAAAGTTAAACAAAATGGCTATTTTAGAAGCTGATG
32854901 GTTGAAAAAAAAAGAGTTTGTTTAGAAAATAAGTTGATGAAAAATATGGATTGTGAACTTAAAAC
456 GTTGAAAAAAAAAGAGTTTGTTTAGAAAATAAGTTGATGAAAAATATGGATTGTGAACTTAAAAC
32854966 AAGAATGAACCCTTAATAAAGATTAAGGACTCGATTCTTATAAGTTTTAAGGTGGATGGTGGATA
521 AAGAATGAACCCTTAATAAAGATTAAGGACTCGATTCTTATAAGTTTTAAGGTGGATGGTGGATA
32855031 GTTGGATAGAATCGTGACCCACTATCTAGCAAGATAGGAACCAGACAATATGAAGGGTGAAC
586 GTTGGATAGAATCGTGACCCACTATCTAGCAAGATAGGAACCAGACAATATGAAGGGTGAAC
32855093 GC
1 GC
32855095 CACACTCAAA
Statistics
Matches: 648, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
647 648 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.28
Consensus pattern (647 bp):
GCAAACATTGAGGATGAGAAATCGACTTCAGAGGGAAAAAGCTGAAAGGTTAAGTTTGTAATATA
AGGGCCAAGTATTAGTGGTCGATTAGAGCGTAAAATAGCATGAAAGTTCAATGCAAACCAATATC
CTAAATTAATTTTAAATCCAGAATGCATACACCACAAAAAAAATTCAATTTTATTTAAAATAGAT
GACTAATTATTTCGTCCTGAAAAACTAAAAATTAAAAATCGATGAATATATCTCAAAGCGGGTTC
ACGCACCAACAATCCTTAGAGGTCTTTGGATTATAACATTGATTTCTAGAATGAGTTAAAGTACA
ATAAACATCTTGAGCATCAAAGTAGATACGAACTTGCTTTTGTTGTCGAAATTGAGTCGTAAAGT
TACCCGATTGTTAAATTAAGTATTGAAACTAAAGTTAAACAAAATGGCTATTTTAGAAGCTGATG
GTTGAAAAAAAAAGAGTTTGTTTAGAAAATAAGTTGATGAAAAATATGGATTGTGAACTTAAAAC
AAGAATGAACCCTTAATAAAGATTAAGGACTCGATTCTTATAAGTTTTAAGGTGGATGGTGGATA
GTTGGATAGAATCGTGACCCACTATCTAGCAAGATAGGAACCAGACAATATGAAGGGTGAAC
Found at i:32859923 original size:41 final size:41
Alignment explanation
Indices: 32859836--32859996 Score: 227
Period size: 41 Copynumber: 4.0 Consensus size: 41
32859826 TTGTATAAAA
* * * * * *
32859836 CACCGGCATAAAGCCTGCT-GAAACAAAGACCGATACATTC
1 CACCGGCACAAAGCCTGCTAGACATAAAGTCTGATACATTT
32859876 CACCGGCACAAAGCCTGCTAGACATAAAGTCTGATACATTT
1 CACCGGCACAAAGCCTGCTAGACATAAAGTCTGATACATTT
32859917 CACCGGCACAAAGCCTGCTAGACATAAAGTCTGATACATTT
1 CACCGGCACAAAGCCTGCTAGACATAAAGTCTGATACATTT
* *
32859958 CACCGGCATC-AAGCCTGCTAGACGTAAAGTCTGAAACAT
1 CACCGGCA-CAAAGCCTGCTAGACATAAAGTCTGATACAT
32859997 CTTATTTTCA
Statistics
Matches: 111, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
40 18 0.16
41 92 0.83
42 1 0.01
ACGTcount: A:0.35, C:0.28, G:0.18, T:0.19
Consensus pattern (41 bp):
CACCGGCACAAAGCCTGCTAGACATAAAGTCTGATACATTT
Found at i:32860667 original size:16 final size:17
Alignment explanation
Indices: 32860646--32860680 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
32860636 ATCTAATAAT
32860646 TTATACAT-GTATATAC
1 TTATACATCGTATATAC
*
32860662 TTATACATCGTTTATAC
1 TTATACATCGTATATAC
32860679 TT
1 TT
32860681 CAACTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.49
Consensus pattern (17 bp):
TTATACATCGTATATAC
Found at i:32863626 original size:33 final size:33
Alignment explanation
Indices: 32863584--32863651 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
32863574 TAAACCCAGC
* *
32863584 CTGCCAGCCCAATTTTATTTTTTCTCTTGTAGG
1 CTGCAAGCCCAATTTTATTTTTTCTCCTGTAGG
32863617 CTGCAAGCCCAATTTTATTTTTTCTCCTGTAGG
1 CTGCAAGCCCAATTTTATTTTTTCTCCTGTAGG
32863650 CT
1 CT
32863652 CCAATTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.16, C:0.25, G:0.15, T:0.44
Consensus pattern (33 bp):
CTGCAAGCCCAATTTTATTTTTTCTCCTGTAGG
Found at i:32863655 original size:27 final size:28
Alignment explanation
Indices: 32863592--32863672 Score: 92
Period size: 33 Copynumber: 2.8 Consensus size: 28
32863582 GCCTGCCAGC
*
32863592 CCAATTTTATTTTTTCTCTTGTAGGCTGCAA
1 CCAATTTTATTTTTTCTCCTGTAGGCT---A
32863623 GCCCAATTTTATTTTTTCTCCTGTAGGCT-
1 --CCAATTTTATTTTTTCTCCTGTAGGCTA
*
32863652 CCAATTTTATTGTTTCTCCTG
1 CCAATTTTATTTTTTCTCCTG
32863673 CAGGTAAAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
27 20 0.43
33 26 0.57
ACGTcount: A:0.16, C:0.22, G:0.12, T:0.49
Consensus pattern (28 bp):
CCAATTTTATTTTTTCTCCTGTAGGCTA
Found at i:32866371 original size:45 final size:45
Alignment explanation
Indices: 32866307--32866395 Score: 178
Period size: 45 Copynumber: 2.0 Consensus size: 45
32866297 ATTGTTGTTG
32866307 AAGGCTTAAAGGAAATGAATAAATCTGTTGAACGTGTTAGGGGGC
1 AAGGCTTAAAGGAAATGAATAAATCTGTTGAACGTGTTAGGGGGC
32866352 AAGGCTTAAAGGAAATGAATAAATCTGTTGAACGTGTTAGGGGG
1 AAGGCTTAAAGGAAATGAATAAATCTGTTGAACGTGTTAGGGGG
32866396 GCTGTTAGAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.36, C:0.08, G:0.31, T:0.25
Consensus pattern (45 bp):
AAGGCTTAAAGGAAATGAATAAATCTGTTGAACGTGTTAGGGGGC
Found at i:32867845 original size:20 final size:20
Alignment explanation
Indices: 32867822--32867884 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
32867812 TATGTGTTAA
32867822 TTTTAAGACTTATGTAATGT
1 TTTTAAGACTTATGTAATGT
* *
32867842 TTTT-A-A-TTATGTAGTGA
1 TTTTAAGACTTATGTAATGT
**
32867859 TTCAAAGACTTATGTAATGT
1 TTTTAAGACTTATGTAATGT
32867879 TTTTAA
1 TTTTAA
32867885 TTATGTAGTG
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 11 0.34
18 2 0.06
19 2 0.06
20 17 0.53
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.49
Consensus pattern (20 bp):
TTTTAAGACTTATGTAATGT
Found at i:32867851 original size:17 final size:17
Alignment explanation
Indices: 32867831--32867891 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
32867821 ATTTTAAGAC
32867831 TTATGTAATGTTTTTAA
1 TTATGTAATGTTTTTAA
* ***
32867848 TTATGTAGTGATTCAAAGA
1 TTATGTAATG-TTTTTA-A
32867867 CTTATGTAATGTTTTTAA
1 -TTATGTAATGTTTTTAA
32867885 TTATGTA
1 TTATGTA
32867892 GTGCTTCAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 16 0.48
18 4 0.12
19 4 0.12
20 9 0.27
ACGTcount: A:0.31, C:0.03, G:0.15, T:0.51
Consensus pattern (17 bp):
TTATGTAATGTTTTTAA
Found at i:32867867 original size:37 final size:37
Alignment explanation
Indices: 32867826--32867900 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
32867816 TGTTAATTTT
32867826 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
32867863 AAGACTTATGTAATGTTTTTAATTATGTAGTGCTTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
32867900 A
1 A
32867901 TTCGGTTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.32, C:0.07, G:0.16, T:0.45
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
Found at i:32867916 original size:9 final size:9
Alignment explanation
Indices: 32867902--32867981 Score: 115
Period size: 9 Copynumber: 8.9 Consensus size: 9
32867892 GTGCTTCAAT
32867902 TCGGTTAAA
1 TCGGTTAAA
32867911 TCGGTTAAA
1 TCGGTTAAA
*
32867920 TCGATTAAA
1 TCGGTTAAA
* *
32867929 TCGATTAAG
1 TCGGTTAAA
32867938 TCGGTTAAA
1 TCGGTTAAA
*
32867947 TTGGTTAAA
1 TCGGTTAAA
*
32867956 TCGGTTAAG
1 TCGGTTAAA
32867965 TCGGTTAAA
1 TCGGTTAAA
32867974 TCGGTTAA
1 TCGGTTAA
32867982 TTTTTAACTA
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 63 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.35
Consensus pattern (9 bp):
TCGGTTAAA
Found at i:32868367 original size:15 final size:15
Alignment explanation
Indices: 32868347--32868380 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
32868337 GGTTTTGGTG
*
32868347 TTTTATTTATTTGTT
1 TTTTATTTATTTATT
32868362 TTTTATTTATTTATT
1 TTTTATTTATTTATT
32868377 TTTT
1 TTTT
32868381 CTAGCCGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (15 bp):
TTTTATTTATTTATT
Found at i:32874670 original size:32 final size:32
Alignment explanation
Indices: 32874634--32874717 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 32
32874624 TAATACTTTT
32874634 ATTTTAAAATATTTATAAATAGTCCAACAGTA
1 ATTTTAAAATATTTATAAATAGTCCAACAGTA
* * * *
32874666 ATTTT-AAATAATTA-AAA-A-T---ATATTT
1 ATTTTAAAATATTTATAAATAGTCCAACAGTA
32874691 ATTTTAAAATATTTATAAATAGTCCAA
1 ATTTTAAAATATTTATAAATAGTCCAA
32874718 TAGTTTTTAG
Statistics
Matches: 40, Mismatches: 5, Indels: 14
0.68 0.08 0.24
Matches are distributed among these distances:
25 8 0.20
26 8 0.20
27 3 0.08
28 2 0.05
29 2 0.05
30 3 0.08
31 8 0.20
32 6 0.15
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.42
Consensus pattern (32 bp):
ATTTTAAAATATTTATAAATAGTCCAACAGTA
Found at i:32874769 original size:11 final size:11
Alignment explanation
Indices: 32874753--32874777 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32874743 TCATACTAAC
32874753 ATTTTCTCCAT
1 ATTTTCTCCAT
32874764 ATTTTCTCCAT
1 ATTTTCTCCAT
32874775 ATT
1 ATT
32874778 GGTAGATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.24, G:0.00, T:0.56
Consensus pattern (11 bp):
ATTTTCTCCAT
Found at i:32878271 original size:44 final size:44
Alignment explanation
Indices: 32878197--32878291 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 44
32878187 ATTCTCTCTC
* *
32878197 AACTCAAAAATTGCCTTCGCCAGTTCTTACATGTTTAAATACAG
1 AACTCAAAAATTGCCTTCACCAGTTATTACATGTTTAAATACAG
* * * * *
32878241 AACTCGAACATTGGCTTCACCAGTTATTACATGTTTACATACTG
1 AACTCAAAAATTGCCTTCACCAGTTATTACATGTTTAAATACAG
32878285 AA-TCAAA
1 AACTCAAA
32878292 GAATACACTA
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 4 0.09
44 39 0.91
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.32
Consensus pattern (44 bp):
AACTCAAAAATTGCCTTCACCAGTTATTACATGTTTAAATACAG
Found at i:32881064 original size:42 final size:42
Alignment explanation
Indices: 32880975--32881055 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
32880965 ATTTCGTAAC
*
32880975 AAATATTTACAAATATCAAAAGAATATATTTATATAAATAAA
1 AAATATTTACAAATATCAAAAGAATATAATTATATAAATAAA
* * *
32881017 AAATATTTATAAATATGAAATGAATA-AGATTATATAAAT
1 AAATATTTACAAATATCAAAAGAATATA-ATTATATAAAT
32881056 TTTAAATATA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 1 0.03
42 33 0.97
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (42 bp):
AAATATTTACAAATATCAAAAGAATATAATTATATAAATAAA
Found at i:32881096 original size:19 final size:18
Alignment explanation
Indices: 32881059--32881105 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
32881049 TATAAATTTT
*
32881059 AAATATAAAATATTCATA
1 AAATATAAAATACTCATA
* *
32881077 ATTATATAAAATACTGATA
1 A-AATATAAAATACTCATA
32881096 AAATATAAAA
1 AAATATAAAA
32881106 AAAATCATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (18 bp):
AAATATAAAATACTCATA
Found at i:32881917 original size:30 final size:30
Alignment explanation
Indices: 32881883--32881939 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
32881873 AATAATAAAA
* *
32881883 AATAAAAATCA-ATAGAAATTATAAAAATGT
1 AATAAAAAT-ATATACAAATTAGAAAAATGT
32881913 AATAAAAATATATACAAATTAGAAAAA
1 AATAAAAATATATACAAATTAGAAAAA
32881940 ATATAAAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.67, C:0.04, G:0.05, T:0.25
Consensus pattern (30 bp):
AATAAAAATATATACAAATTAGAAAAATGT
Found at i:32882027 original size:29 final size:30
Alignment explanation
Indices: 32881964--32882035 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 30
32881954 AAAAAATTAT
* *
32881964 AGAAAATTTTAAATTTTTATAAAAATAGTA
1 AGAAAATTATAAAATTTTATAAAAATAGTA
* *
32881994 A-AAAATTATAAAATTTTAT-AAAGTCGTA
1 AGAAAATTATAAAATTTTATAAAAATAGTA
*
32882022 AGAAAATTAAAAAA
1 AGAAAATTATAAAA
32882036 ATATAATTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
28 8 0.22
29 27 0.75
30 1 0.03
ACGTcount: A:0.58, C:0.01, G:0.07, T:0.33
Consensus pattern (30 bp):
AGAAAATTATAAAATTTTATAAAAATAGTA
Found at i:32882294 original size:54 final size:54
Alignment explanation
Indices: 32882235--32882339 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
32882225 CTTTGATGTA
*
32882235 TTTTATAAATTTTTTATGACTTTT-ATAAAATTTTAA-AATTAT-TATTTTTATGGT
1 TTTTATAAAATTTTTA-G-CTTTTAATAAAA-TTTAAGAATTATATATTTTTATGGT
* *
32882289 TTTTATAAAATTTTTAGTTTTTAATAAAATTTAAGAATTTTATATTTTTAT
1 TTTTATAAAATTTTTAGCTTTTAATAAAATTTAAGAATTATATATTTTTAT
32882340 TAAAATTTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
52 9 0.20
53 12 0.27
54 24 0.53
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (54 bp):
TTTTATAAAATTTTTAGCTTTTAATAAAATTTAAGAATTATATATTTTTATGGT
Found at i:32882310 original size:19 final size:20
Alignment explanation
Indices: 32882278--32882320 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
32882268 TAAAATTATT
*
32882278 ATTTTTATGGTTTTTATAAA
1 ATTTTTATGGTTTTAATAAA
*
32882298 ATTTTTA-GTTTTTAATAAA
1 ATTTTTATGGTTTTAATAAA
32882317 ATTT
1 ATTT
32882321 AAGAATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (20 bp):
ATTTTTATGGTTTTAATAAA
Found at i:32882327 original size:27 final size:26
Alignment explanation
Indices: 32882297--32882359 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 26
32882287 GTTTTTATAA
32882297 AATTTTTAGTTTTTAATAAAATTTAAG
1 AATTTTTA-TTTTTAATAAAATTTAAG
* *
32882324 AATTTTATATTTTTATTAAAATTTAAT
1 AATTTT-TATTTTTAATAAAATTTAAG
32882351 AATTTTTAT
1 AATTTTTAT
32882360 AACTTATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
26 3 0.09
27 28 0.85
28 2 0.06
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (26 bp):
AATTTTTATTTTTAATAAAATTTAAG
Found at i:32882346 original size:19 final size:21
Alignment explanation
Indices: 32882319--32882359 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
32882309 TTAATAAAAT
*
32882319 TTAAGAATTTTAT-ATTTTTA
1 TTAAGAATTTAATAATTTTTA
32882339 TTAA-AATTTAATAATTTTTA
1 TTAAGAATTTAATAATTTTTA
32882359 T
1 T
32882360 AACTTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
TTAAGAATTTAATAATTTTTA
Found at i:32882366 original size:27 final size:27
Alignment explanation
Indices: 32882313--32882367 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
32882303 TAGTTTTTAA
**
32882313 TAAAATTTAAGAATTTTATATTTTTAT
1 TAAAATTTAAGAATTTTATATACTTAT
*
32882340 TAAAATTTAATAATTTT-TATAACTTAT
1 TAAAATTTAAGAATTTTATAT-ACTTAT
32882367 T
1 T
32882368 TTTTGAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.12
27 21 0.88
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (27 bp):
TAAAATTTAAGAATTTTATATACTTAT
Found at i:32883368 original size:4 final size:4
Alignment explanation
Indices: 32883359--32883384 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
32883349 GGATGTCCTG
32883359 TAAA TAAA TAAA TAAA TAAA TAAA TA
1 TAAA TAAA TAAA TAAA TAAA TAAA TA
32883385 TTGGGTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:32891177 original size:14 final size:14
Alignment explanation
Indices: 32891158--32891185 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32891148 AACATGCATA
32891158 AAATGACCAAATTC
1 AAATGACCAAATTC
32891172 AAATGACCAAATTC
1 AAATGACCAAATTC
32891186 CATTAAACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.21, G:0.07, T:0.21
Consensus pattern (14 bp):
AAATGACCAAATTC
Found at i:32892656 original size:26 final size:26
Alignment explanation
Indices: 32892620--32892684 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
32892610 CATCGTTGCT
*
32892620 CACACGAGCTGTGAAACGAGTCTACC
1 CACACGAGCTGTGAAACAAGTCTACC
* * *
32892646 CACACGAGCTGTGAAATAAGTCTGCT
1 CACACGAGCTGTGAAACAAGTCTACC
*
32892672 CACACGAGTTGTG
1 CACACGAGCTGTG
32892685 GGTCAAAATG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.29, C:0.26, G:0.25, T:0.20
Consensus pattern (26 bp):
CACACGAGCTGTGAAACAAGTCTACC
Found at i:32898613 original size:23 final size:24
Alignment explanation
Indices: 32898569--32898618 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
32898559 CTGCAAAAAT
* *
32898569 TGGTGGCTTTGTCCATAACCTACA
1 TGGTGGCTTTATCCACAACCTACA
*
32898593 TGGTGG-TTTATCCACACCCTACA
1 TGGTGGCTTTATCCACAACCTACA
32898616 TGG
1 TGG
32898619 CAGCTTGTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.32
Consensus pattern (24 bp):
TGGTGGCTTTATCCACAACCTACA
Found at i:32901797 original size:27 final size:27
Alignment explanation
Indices: 32901767--32901944 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32901757 ATATTGAGTC
* * * *
32901767 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
32901794 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32901821 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
32901849 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32901876 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
32901903 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32901930 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32901945 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32901906 original size:82 final size:81
Alignment explanation
Indices: 32901788--32901943 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32901778 TGCTATATAA
* *
32901788 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
32901853 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
32901870 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
32901934 CACTTAGTGC
65 CACTTAGTGC
32901944 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32910455 original size:27 final size:27
Alignment explanation
Indices: 32910425--32910601 Score: 144
Period size: 27 Copynumber: 6.5 Consensus size: 27
32910415 ATATTGAGCC
* * *
32910425 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCCACATAATCAACT
* * *
32910452 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACATAATCAACT
* *
32910479 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCCACATAAT-CAACT
* ** *
32910507 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACATAATCAACT
* **
32910534 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CATAATCAACT
* *
32910561 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCCACATAA-TCA-ACT
32910588 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32910602 TGTACAATTT
Statistics
Matches: 122, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.02
27 95 0.78
28 24 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCCACATAATCAACT
Found at i:32913250 original size:24 final size:24
Alignment explanation
Indices: 32913214--32913262 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
32913204 GGAAGAATTA
32913214 GTGGCTTCATCCACAACCTACATG
1 GTGGCTTCATCCACAACCTACATG
* *
32913238 GTGGCTTCGTCCATAACCTACATG
1 GTGGCTTCATCCACAACCTACATG
32913262 G
1 G
32913263 CAACTTGTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (24 bp):
GTGGCTTCATCCACAACCTACATG
Found at i:32930536 original size:20 final size:19
Alignment explanation
Indices: 32930504--32930560 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 19
32930494 TTTCTTGGAG
32930504 ATTTTCTTCTCATTATTTCT
1 ATTTTCTTCTCA-TATTTCT
*
32930524 ATTTTCGTT-TCATATTTTTT
1 ATTTTC-TTCTCATA-TTTCT
* *
32930544 ATTTTTTTCTGATATTT
1 ATTTTCTTCTCATATTT
32930561 AAAAAAAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
19 7 0.23
20 22 0.71
21 2 0.06
ACGTcount: A:0.16, C:0.12, G:0.04, T:0.68
Consensus pattern (19 bp):
ATTTTCTTCTCATATTTCT
Found at i:32930663 original size:79 final size:75
Alignment explanation
Indices: 32930545--32930694 Score: 246
Period size: 79 Copynumber: 1.9 Consensus size: 75
32930535 ATATTTTTTA
32930545 TTTTTTTCTGATATTTAAAAAAAAGAATAAAGAACGAAAAGGGCGCTTACCTGGGTTCGGGCGTT
1 TTTTTTTCTGATATTTAAAAAAAAGAATAAAGAACGAAAAGGGCGCTTACCTGGGTTCGGGCGTT
32930610 GGTTTCTATT
66 GGTTTCTATT
* *
32930620 TTTTTTTCTGATATTTTAAAAAAAAAAAGAATAAAGAAGGAAAATGGCGCTTACCTGGGTTCGGG
1 TTTTTTTCTGATA-TTT---AAAAAAAAGAATAAAGAACGAAAAGGGCGCTTACCTGGGTTCGGG
32930685 CGTTGGTTTC
62 CGTTGGTTTC
32930695 GAGGGTCGTA
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
75 13 0.19
76 3 0.04
79 53 0.77
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (75 bp):
TTTTTTTCTGATATTTAAAAAAAAGAATAAAGAACGAAAAGGGCGCTTACCTGGGTTCGGGCGTT
GGTTTCTATT
Found at i:32931379 original size:17 final size:17
Alignment explanation
Indices: 32931353--32931390 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
32931343 ATCATTGTAA
*
32931353 ATATTTTATTATTTTAC
1 ATATTCTATTATTTTAC
*
32931370 ATATTCTATTATTTTAT
1 ATATTCTATTATTTTAC
32931387 ATAT
1 ATAT
32931391 ATTGCACCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (17 bp):
ATATTCTATTATTTTAC
Found at i:32933281 original size:48 final size:48
Alignment explanation
Indices: 32933210--32933307 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
32933200 AATTTTACTA
32933210 AATCCCTTCTTCTTTTTAAGTGTGTGCCGCCCATGCCTAATCAAACCT
1 AATCCCTTCTTCTTTTTAAGTGTGTGCCGCCCATGCCTAATCAAACCT
32933258 AATCCCTTCTTCTTTTTAAGTGTGTGCCGCCCATGCCTAATCAAACCT
1 AATCCCTTCTTCTTTTTAAGTGTGTGCCGCCCATGCCTAATCAAACCT
32933306 AA
1 AA
32933308 GTATAAATAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.35
Consensus pattern (48 bp):
AATCCCTTCTTCTTTTTAAGTGTGTGCCGCCCATGCCTAATCAAACCT
Found at i:32936139 original size:67 final size:67
Alignment explanation
Indices: 32935992--32936139 Score: 224
Period size: 67 Copynumber: 2.2 Consensus size: 67
32935982 ACTGGTAGCC
* * * * *
32935992 TGTTTGCATATATTGGTAGTTTATCTGCATTACCGTTACTGGTGGCTTGTCCGTAATACTAGCAG
1 TGTTTGCATATATTGGCAGTTTATCTGCATTACCATTACTAGTGGCTTGTCCATAATACTAGCAA
32936057 CT
66 CT
**
32936059 TGTTTGTTTATATTGGCAGTTTATCTGCATTACCATTACTAGTGGCTTGTCCATAATACTAGCAA
1 TGTTTGCATATATTGGCAGTTTATCTGCATTACCATTACTAGTGGCTTGTCCATAATACTAGCAA
32936124 CT
66 CT
*
32936126 TGTTTGCACATATT
1 TGTTTGCATATATT
32936140 AACAATTTGT
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
67 71 1.00
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.42
Consensus pattern (67 bp):
TGTTTGCATATATTGGCAGTTTATCTGCATTACCATTACTAGTGGCTTGTCCATAATACTAGCAA
CT
Found at i:32936155 original size:67 final size:67
Alignment explanation
Indices: 32936011--32936158 Score: 188
Period size: 67 Copynumber: 2.2 Consensus size: 67
32936001 ATATTGGTAG
* * * * *** **
32936011 TTTATCTGCATTACCGTTACTGGTGGCTTGTCCGTAATACTAGCAGCTTGTTTGTTTATATTGGC
1 TTTATCTGCATTACCATTACTAGTGGCTTGTCCATAATACTAGCAACTTGTTTGCACATATTAAC
*
32936076 AG
66 AA
32936078 TTTATCTGCATTACCATTACTAGTGGCTTGTCCATAATACTAGCAACTTGTTTGCACATATTAAC
1 TTTATCTGCATTACCATTACTAGTGGCTTGTCCATAATACTAGCAACTTGTTTGCACATATTAAC
32936143 AA
66 AA
* *
32936145 TTTGTTTGCATTAC
1 TTTATCTGCATTAC
32936159 TATACTGGTG
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
67 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.41
Consensus pattern (67 bp):
TTTATCTGCATTACCATTACTAGTGGCTTGTCCATAATACTAGCAACTTGTTTGCACATATTAAC
AA
Found at i:32939437 original size:11 final size:10
Alignment explanation
Indices: 32939420--32939458 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
32939410 ATATATATAT
32939420 TTAAAATTTA
1 TTAAAATTTA
32939430 TTAGAAATTTA
1 TTA-AAATTTA
*
32939441 -TAAAAGTTA
1 TTAAAATTTA
32939450 TTAAAATTT
1 TTAAAATTT
32939459 GATCAAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 6 0.24
10 12 0.48
11 7 0.28
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (10 bp):
TTAAAATTTA
Found at i:32939535 original size:20 final size:20
Alignment explanation
Indices: 32939476--32939559 Score: 66
Period size: 20 Copynumber: 4.2 Consensus size: 20
32939466 TATAAAAATT
*
32939476 ATAAATTTTTTAATTTTTTTTA
1 ATAAATTTTAT-A-TTTTTTTA
* * *
32939498 A-AAAATTTATAATATTTTA
1 ATAAATTTTATATTTTTTTA
*
32939517 ATAAGTTTTATATTTTTTT-
1 ATAAATTTTATATTTTTTTA
*
32939536 ATCAAATTTTA-ATTTTTTTT
1 AT-AAATTTTATATTTTTTTA
32939556 ATAA
1 ATAA
32939560 TTTCATAATA
Statistics
Matches: 50, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
19 19 0.38
20 23 0.46
21 7 0.14
22 1 0.02
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (20 bp):
ATAAATTTTATATTTTTTTA
Found at i:32942655 original size:41 final size:41
Alignment explanation
Indices: 32942594--32942721 Score: 172
Period size: 41 Copynumber: 3.2 Consensus size: 41
32942584 AATACTGTTC
32942594 CAAAATTTATCAGTTCGTATTTTATTTTTAATCTTTTTTTT
1 CAAAATTTATCAGTTCGTATTTTATTTTTAATCTTTTTTTT
* **
32942635 CAAAATTTATCAGCTT-GTATTTTATTTTTAA-C-CTCATTT
1 CAAAATTTATCAG-TTCGTATTTTATTTTTAATCTTTTTTTT
* * *
32942674 CAAAATTTATCTGTTCGTATCTTATTTTTAATATTTTTTTT
1 CAAAATTTATCAGTTCGTATTTTATTTTTAATCTTTTTTTT
32942715 CAAAATT
1 CAAAATT
32942722 GTATACGTAG
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
38 2 0.03
39 30 0.41
40 1 0.01
41 39 0.53
42 2 0.03
ACGTcount: A:0.27, C:0.12, G:0.05, T:0.56
Consensus pattern (41 bp):
CAAAATTTATCAGTTCGTATTTTATTTTTAATCTTTTTTTT
Found at i:32942699 original size:39 final size:41
Alignment explanation
Indices: 32942594--32942705 Score: 149
Period size: 39 Copynumber: 2.8 Consensus size: 41
32942584 AATACTGTTC
* **
32942594 CAAAATTTATCAGTTCGTATTTTATTTTTAATCTTTTTTTT
1 CAAAATTTATCAGTTCGTATTTTATTTTTAATCTCTCATTT
32942635 CAAAATTTATCAGCTT-GTATTTTATTTTTAA-C-CTCATTT
1 CAAAATTTATCAG-TTCGTATTTTATTTTTAATCTCTCATTT
* *
32942674 CAAAATTTATCTGTTCGTATCTTATTTTTAAT
1 CAAAATTTATCAGTTCGTATTTTATTTTTAAT
32942706 ATTTTTTTTC
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
38 2 0.03
39 30 0.48
40 1 0.02
41 28 0.44
42 2 0.03
ACGTcount: A:0.27, C:0.12, G:0.05, T:0.55
Consensus pattern (41 bp):
CAAAATTTATCAGTTCGTATTTTATTTTTAATCTCTCATTT
Found at i:32943576 original size:23 final size:22
Alignment explanation
Indices: 32943529--32943576 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
32943519 ATTCTTTTCA
**
32943529 TTTTTTGTATCCGAAAATCCTT
1 TTTTTTGTATCCGAAAATCAAT
32943551 TTTTTCTGTATCC-ATAAATCAAT
1 TTTTT-TGTATCCGA-AAATCAAT
32943574 TTT
1 TTT
32943577 GGTCAGTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.25, C:0.17, G:0.06, T:0.52
Consensus pattern (22 bp):
TTTTTTGTATCCGAAAATCAAT
Found at i:32943710 original size:29 final size:30
Alignment explanation
Indices: 32943652--32943710 Score: 68
Period size: 29 Copynumber: 2.0 Consensus size: 30
32943642 GTTAGTATTC
* *
32943652 TTTTATGACAATATTTTTATTCAATTAATG
1 TTTTATGACAATATTTTTACTCAATCAATG
*
32943682 TTTTATG-TAATATTTTGTACTC-ATCAATG
1 TTTTATGACAATATTTT-TACTCAATCAATG
32943711 CAACAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.53
Consensus pattern (30 bp):
TTTTATGACAATATTTTTACTCAATCAATG
Found at i:32944759 original size:28 final size:27
Alignment explanation
Indices: 32944685--32944755 Score: 115
Period size: 28 Copynumber: 2.6 Consensus size: 27
32944675 AAAAAATGAC
*
32944685 ATTAACAAAACTTTTTATTCAATTAAT
1 ATTAACAAAATTTTTTATTCAATTAAT
*
32944712 ACTAACAAAAGTTTTTTATTCAATTAAT
1 ATTAACAAAA-TTTTTTATTCAATTAAT
32944740 ATTAACAAAATTTTTT
1 ATTAACAAAATTTTTT
32944756 TATTAAAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 15 0.38
28 25 0.62
ACGTcount: A:0.44, C:0.10, G:0.01, T:0.45
Consensus pattern (27 bp):
ATTAACAAAATTTTTTATTCAATTAAT
Found at i:32948189 original size:16 final size:16
Alignment explanation
Indices: 32948165--32948202 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
32948155 TTTGGTTCGC
* *
32948165 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
32948181 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
32948197 TGTAAT
1 TGTAAT
32948203 AGCAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:32948286 original size:39 final size:43
Alignment explanation
Indices: 32948181--32948290 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
32948171 GGATTAGAGG
32948181 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGCTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGCT--A
* * ***
32948226 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGCTA
32948266 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
32948291 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 11 0.19
45 23 0.40
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGCTA
Found at i:32948456 original size:18 final size:17
Alignment explanation
Indices: 32948435--32948469 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
32948425 TTATTATTAA
*
32948435 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
32948453 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
32948470 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:32948608 original size:157 final size:157
Alignment explanation
Indices: 32948322--32948638 Score: 571
Period size: 157 Copynumber: 2.0 Consensus size: 157
32948312 TAGAATACCC
*
32948322 TTAGCATAAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* *
32948387 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
32948452 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
* * *
32948479 TTAGCAGAAATTTGTTTTGGTAAATTATTTTTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
*
32948544 ATATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
32948609 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
32948636 TTA
1 TTA
32948639 ATATTCTTAT
Statistics
Matches: 153, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
157 153 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
TTAGCAGAAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:32948609 original size:16 final size:16
Alignment explanation
Indices: 32948572--32948613 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
32948562 TTAATCATAT
*
32948572 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
32948588 TT-AAATATATTATAA
1 TTAAAATATATTATAA
32948603 TTAAAATATAT
1 TTAAAATATAT
32948614 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:32948620 original size:14 final size:15
Alignment explanation
Indices: 32948581--32948622 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
32948571 TTTAAACATA
*
32948581 ATTATTATTAAATAT
1 ATTATAATTAAATAT
32948596 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
32948610 A-TATAATTTAATA
1 ATTATAATTAAATA
32948623 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:32948673 original size:61 final size:61
Alignment explanation
Indices: 32948607--32948794 Score: 201
Period size: 61 Copynumber: 3.1 Consensus size: 61
32948597 TTATAATTAA
32948607 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
* ** * * * * *
32948668 AATATATGATACAGTAAAATATAAATTAA-AA-TAATAATTATTAAAT--ATATTA-T--AATTA
1 AATATATAATTTAATAAAAT-T--CTTAATAATTAAT-ATTCTTATATGAAT-TTACTCAAATCA
*
32948726 A
61 T
32948727 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
32948788 AATATAT
1 AATATAT
32948795 GATACTATAA
Statistics
Matches: 97, Mismatches: 18, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
56 4 0.04
57 10 0.10
58 8 0.08
59 23 0.24
61 30 0.31
62 8 0.08
63 10 0.10
64 4 0.04
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
Found at i:32948703 original size:157 final size:154
Alignment explanation
Indices: 32948374--32948693 Score: 356
Period size: 157 Copynumber: 2.0 Consensus size: 154
32948364 TTTAAATTTT
*
32948374 AATAAGATTATTATTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATAT
1 AATAAGA-TATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATAT
* * * * * **
32948439 ATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAAATTTGTTTTGGTAAAT
65 ATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAAT
* * * ** * *
32948504 TATTTTTGTTATTGTTATTTAAATTTT
130 TATATATGATACAGTTA--TAAATATA
*
32948531 AATAAGATTATTAATATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATAT
1 AATAAGA-TATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATAT
* **
32948596 ATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTC
65 ATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACA--CAAATATG-ATTTACT-
32948661 AAATCATAATATATGATACAG-TA-AAATATA
126 AAAT--T-ATATATGATACAGTTATAAATATA
32948691 AAT
1 AAT
32948694 TAAAATAATA
Statistics
Matches: 137, Mismatches: 19, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
157 106 0.77
159 4 0.03
160 12 0.09
161 4 0.03
163 3 0.02
164 8 0.06
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (154 bp):
AATAAGATATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATA
TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAATT
ATATATGATACAGTTATAAATATA
Found at i:32948731 original size:16 final size:16
Alignment explanation
Indices: 32948691--32948736 Score: 60
Period size: 15 Copynumber: 3.0 Consensus size: 16
32948681 GTAAAATATA
32948691 AATTAAAATA-ATAAT
1 AATTAAAATATATAAT
* *
32948706 TATT-AAATATATTAT
1 AATTAAAATATATAAT
32948721 AATTAAAATATATAAT
1 AATTAAAATATATAAT
32948737 TTAATAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
14 5 0.20
15 10 0.40
16 10 0.40
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AATTAAAATATATAAT
Found at i:32948878 original size:120 final size:120
Alignment explanation
Indices: 32948572--32948867 Score: 472
Period size: 120 Copynumber: 2.5 Consensus size: 120
32948562 TTAATCATAT
*
32948572 TTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTAAA-ATAATTAATATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAT
32948637 TAATATTCTTATATGAATTTACTCAAATCATAATATATGATACAGTAAAATATAAA
65 TAATATTCTTATATGAATTTACTCAAATCATAATATATGATACAGTAAAATATAAA
32948693 TTAAAATAA-TAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTAAAATAATTAA-TATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAT
***
32948757 TAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTA-TAAAA-ATTTTT
65 TAATATTCTTATATGAATTTACTCAAATCATAATATATGATAC-AGTAAAATA-TAAA
* * *
32948813 TTGAAATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 TTAAAATAATTAATATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
32948868 TAAAATAATT
Statistics
Matches: 164, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
119 3 0.02
120 152 0.93
121 9 0.05
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.43
Consensus pattern (120 bp):
TTAAAATAATTAATATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATT
AATATTCTTATATGAATTTACTCAAATCATAATATATGATACAGTAAAATATAAA
Found at i:32950670 original size:14 final size:15
Alignment explanation
Indices: 32950637--32950670 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
32950627 AGTGTTCATC
*
32950637 CAAAACAGAACCATA
1 CAAAACAGAAACATA
32950652 CAAAACAGAAACA-A
1 CAAAACAGAAACATA
32950666 CAAAA
1 CAAAA
32950671 TCTGCTACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.68, C:0.24, G:0.06, T:0.03
Consensus pattern (15 bp):
CAAAACAGAAACATA
Found at i:32955562 original size:27 final size:27
Alignment explanation
Indices: 32955514--32955574 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
32955504 GTATGAACCA
*
32955514 GTGTTTACTGTCTCGACAGACTATCCC
1 GTGTTTACTGTCTCGACAGACTATCAC
* *
32955541 GTGTTTACTGTC-CTGGCGGACTATCAC
1 GTGTTTACTGTCTC-GACAGACTATCAC
*
32955568 ATGTTTA
1 GTGTTTA
32955575 TTGACTCCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGTTTACTGTCTCGACAGACTATCAC
Found at i:32957568 original size:27 final size:28
Alignment explanation
Indices: 32957524--32957590 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
32957514 TGAATTTTTG
* *
32957524 GTGAAATTAAGTAATTA-GGACTAAATT
1 GTGAAATTAAATAATTAGGGACTAAAAT
**
32957551 GTGAAATTAAATTTTTAGGGGACTAAAAT
1 GTGAAATTAAATAATTA-GGGACTAAAAT
32957580 GTGAAA-TAAAT
1 GTGAAATTAAAT
32957591 GAAATATGTG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 14 0.41
28 5 0.15
29 15 0.44
ACGTcount: A:0.45, C:0.03, G:0.19, T:0.33
Consensus pattern (28 bp):
GTGAAATTAAATAATTAGGGACTAAAAT
Found at i:32958945 original size:42 final size:42
Alignment explanation
Indices: 32958898--32959158 Score: 301
Period size: 42 Copynumber: 6.2 Consensus size: 42
32958888 GGCTTAGCGC
*
32958898 CTAGCAGGCTTATTGCCAGTGAAACAATATCAAACTTTACGT
1 CTAGCAGGCTTATTGCCAGTGAAACAATATCAGACTTTACGT
* ** * * *
32958940 CTAGCAGGCTTAATGCTGGTGAAATAATTTCAGACTTTACGC
1 CTAGCAGGCTTATTGCCAGTGAAACAATATCAGACTTTACGT
* * * *
32958982 CTAGCAGGCTTATTGCTAGTGAAACAAAATTAGACTTTATGT
1 CTAGCAGGCTTATTGCCAGTGAAACAATATCAGACTTTACGT
* * * * * *
32959024 CTATCAGGCTTAATGCCGGTGAAATAATTTCAGACTTTATGT
1 CTAGCAGGCTTATTGCCAGTGAAACAATATCAGACTTTACGT
*
32959066 CTAGCAGGCTTATTGCCAGTGAAACAATATCAAACTTTACGT
1 CTAGCAGGCTTATTGCCAGTGAAACAATATCAGACTTTACGT
* * * *
32959108 CTAGCAGGCTTAATT-CCGGTGAAACAGT-TCAGACTATATGT
1 CTAGCAGGCTT-ATTGCCAGTGAAACAATATCAGACTTTACGT
32959149 CTAGCAGGCT
1 CTAGCAGGCT
32959159 AAGTGCCGGT
Statistics
Matches: 183, Mismatches: 35, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
41 20 0.11
42 160 0.87
43 3 0.02
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31
Consensus pattern (42 bp):
CTAGCAGGCTTATTGCCAGTGAAACAATATCAGACTTTACGT
Found at i:32959026 original size:84 final size:84
Alignment explanation
Indices: 32958882--32959158 Score: 387
Period size: 84 Copynumber: 3.3 Consensus size: 84
32958872 TGAAATTGAG
*
32958882 ATTTCAGGC-TTAGCGCCTAGCAGGCTTATTGCCAGTGAAACAATATCAAACTTTACGTCTAGCA
1 ATTTCAGACTTTA-CGCCTAGCAGGCTTATTGCCAGTGAAACAATATCAAACTTTACGTCTAGCA
*
32958946 GGCTTAATGCTGGTGAAATA
65 GGCTTAATGCCGGTGAAATA
* * * * * *
32958966 ATTTCAGACTTTACGCCTAGCAGGCTTATTGCTAGTGAAACAAAATTAGACTTTATGTCTATCAG
1 ATTTCAGACTTTACGCCTAGCAGGCTTATTGCCAGTGAAACAATATCAAACTTTACGTCTAGCAG
32959031 GCTTAATGCCGGTGAAATA
66 GCTTAATGCCGGTGAAATA
* *
32959050 ATTTCAGACTTTATGTCTAGCAGGCTTATTGCCAGTGAAACAATATCAAACTTTACGTCTAGCAG
1 ATTTCAGACTTTACGCCTAGCAGGCTTATTGCCAGTGAAACAATATCAAACTTTACGTCTAGCAG
* *
32959115 GCTTAATTCCGGTGAAA-C
66 GCTTAATGCCGGTGAAATA
* * * *
32959133 AGTTCAGACTATATGTCTAGCAGGCT
1 ATTTCAGACTTTACGCCTAGCAGGCT
32959159 AAGTGCCGGT
Statistics
Matches: 172, Mismatches: 20, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
83 24 0.14
84 145 0.84
85 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (84 bp):
ATTTCAGACTTTACGCCTAGCAGGCTTATTGCCAGTGAAACAATATCAAACTTTACGTCTAGCAG
GCTTAATGCCGGTGAAATA
Found at i:32966034 original size:23 final size:23
Alignment explanation
Indices: 32966008--32966051 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
32965998 TATGGTTAGG
*
32966008 TTTTCTTCTCTTTTTCTTTTATT
1 TTTTCTTCTCTTTTCCTTTTATT
*
32966031 TTTTGTTCTCTTTTCCTTTTA
1 TTTTCTTCTCTTTTCCTTTTA
32966052 GAGTAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.05, C:0.18, G:0.02, T:0.75
Consensus pattern (23 bp):
TTTTCTTCTCTTTTCCTTTTATT
Found at i:32974253 original size:30 final size:30
Alignment explanation
Indices: 32974218--32974274 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
32974208 TTTCCGACCC
32974218 TAGGGGAAAAATCATAATTTTGT-AAAACTA
1 TAGGGGAAAAAT-ATAATTTTGTCAAAACTA
*
32974248 TAGGGGAAAAATGTAATTTTGTCAAAA
1 TAGGGGAAAAATATAATTTTGTCAAAA
32974275 TATGATTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 9 0.36
30 16 0.64
ACGTcount: A:0.46, C:0.05, G:0.19, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAATATAATTTTGTCAAAACTA
Found at i:32974601 original size:51 final size:51
Alignment explanation
Indices: 32974441--32974777 Score: 281
Period size: 51 Copynumber: 6.6 Consensus size: 51
32974431 GAAGTTGCCA
* *
32974441 GGTCACATGTGTAGTACTATGTGCAGGCTACTAAGTGTACCGGAATG-ATA-
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-ATGAAAAT
** * * * * * **
32974491 GGTTGCATGTGTAGTACTATGTGTAGGCTACTATGCGTACTGAAT-AACTT
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGAAAAT
** * **
32974541 CAATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTGTCGGATGAAAAT
1 -GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGAAAAT
* * ** * *
32974593 GGTTACGTGTGTAGTACTATGTGCACTCTACTACATGTACCAGGATG-ATA-
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GGATGAAAAT
* * * ***
32974643 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGAT-AGCTT
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGAAAAT
** * * * *
32974693 CAATCACTTGTCTAGTACTATGTGCAGACTACTACGTGTATCGGATGAAAAT
1 -GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGAAAAT
*
32974745 GGTCACATGTGTAGTACTATATGCAGGCTACTA
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTA
32974778 TATGAACCGG
Statistics
Matches: 217, Mismatches: 61, Indels: 17
0.74 0.21 0.06
Matches are distributed among these distances:
49 6 0.03
50 70 0.32
51 131 0.60
52 10 0.05
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGAAAAT
Found at i:32974654 original size:101 final size:101
Alignment explanation
Indices: 32974439--32974675 Score: 257
Period size: 101 Copynumber: 2.3 Consensus size: 101
32974429 GTGAAGTTGC
* *
32974439 CAGGTCACATGTGTAGTACTATGTGCAGGCTACTAAGTGTACCGGAATGATAGGTTGCATGTGTA
1 CAGGTCACATGTGTAGTACTATGTGCAGGCTACTAAGTGTACCGGAATGAAAGGTTACATGTGTA
* * ** *
32974504 GTACTATGTGTAGGCTACTATGCGTACTGAATAACTT
66 GTACTATGTGCACGCTACTACACGTACAGAATAAC-T
* * * ** *
32974541 CA-ATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTGTCGG-ATGAAAATGGTTACGTGTG
1 CAGGTCACATGTGTAGTACTATGTGCAGGCTACTAAGTGTACCGGAATG-AAA-GGTTACATGTG
* * * *
32974604 TAGTACTATGTGCACTCTACTACATGTACCAGGATGA-T
64 TAGTACTATGTGCACGCTACTACACGTA-CAGAATAACT
32974642 -AGGTCACATGTGTAGTACTATGTGCAGGCTACTA
1 CAGGTCACATGTGTAGTACTATGTGCAGGCTACTA
32974676 TGCGTACCAG
Statistics
Matches: 112, Mismatches: 19, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
100 4 0.04
101 70 0.62
102 33 0.29
103 5 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (101 bp):
CAGGTCACATGTGTAGTACTATGTGCAGGCTACTAAGTGTACCGGAATGAAAGGTTACATGTGTA
GTACTATGTGCACGCTACTACACGTACAGAATAACT
Found at i:32974725 original size:152 final size:152
Alignment explanation
Indices: 32974441--32974777 Score: 491
Period size: 152 Copynumber: 2.2 Consensus size: 152
32974431 GAAGTTGCCA
* **
32974441 GGTCACATGTGTAGTACTATGTGCAGGCTACTAAGTGTACCGGAATGATAGGTTGCATGTGTAGT
1 GGTCACATGTGTAGTACTATGTGCACGCTACTAAGTGTACCGGAATGATAGGTCACATGTGTAGT
* * * *
32974506 ACTATGTGTAGGCTACTATGCGTACTGAATAACTTCAATCACGTGTGTAGTACTATGTGCAGGCT
66 ACTATGTGCAGGCTACTATGCGTACAGAATAACTTCAATCACGTGTCTAGTACTATGTGCAGACT
*
32974571 ACTACGTGTGTCGGATGAAAAT
131 ACTACGTGTATCGGATGAAAAT
* * *
32974593 GGTTACGTGTGTAGTACTATGTGCACTCTACTACA-TGTACCAGG-ATGATAGGTCACATGTGTA
1 GGTCACATGTGTAGTACTATGTGCACGCTACTA-AGTGTACC-GGAATGATAGGTCACATGTGTA
* *
32974656 GTACTATGTGCAGGCTACTATGCGTACCAG-ATAGCTTCAATCACTTGTCTAGTACTATGTGCAG
64 GTACTATGTGCAGGCTACTATGCGTA-CAGAATAACTTCAATCACGTGTCTAGTACTATGTGCAG
32974720 ACTACTACGTGTATCGGATGAAAAT
128 ACTACTACGTGTATCGGATGAAAAT
* *
32974745 GGTCACATGTGTAGTACTATATGCAGGCTACTA
1 GGTCACATGTGTAGTACTATGTGCACGCTACTA
32974778 TATGAACCGG
Statistics
Matches: 164, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
152 159 0.97
153 5 0.03
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (152 bp):
GGTCACATGTGTAGTACTATGTGCACGCTACTAAGTGTACCGGAATGATAGGTCACATGTGTAGT
ACTATGTGCAGGCTACTATGCGTACAGAATAACTTCAATCACGTGTCTAGTACTATGTGCAGACT
ACTACGTGTATCGGATGAAAAT
Found at i:32982986 original size:14 final size:15
Alignment explanation
Indices: 32982960--32982988 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
32982950 CTTTAGGGGC
32982960 AAAAATGTAATTTTT
1 AAAAATGTAATTTTT
32982975 AAAAATGT-ATTTTT
1 AAAAATGTAATTTTT
32982989 GGACTGGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (15 bp):
AAAAATGTAATTTTT
Found at i:32983168 original size:12 final size:14
Alignment explanation
Indices: 32983151--32983183 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
32983141 GCTAGGTCAC
32983151 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
32983163 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
32983177 ATGTGTA
1 ATGTGTA
32983184 CCGGAATGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 1 0.05
14 11 0.58
ACGTcount: A:0.24, C:0.09, G:0.27, T:0.39
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:32983267 original size:51 final size:51
Alignment explanation
Indices: 32983145--32983440 Score: 278
Period size: 51 Copynumber: 5.8 Consensus size: 51
32983135 GACGTTGCTA
* * *
32983145 GGTCACATGTGTAGTACTATGTGTAGGCTACTATGTGTACCGGAATG-ATA-
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-ATGAAAAT
** * **
32983195 GGTTGCATGTGTAGTACTATGTGCAGGCTACTACGCGTGTCGGATGAAAAT
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGAAAAT
* * ** * * *
32983246 GGTTACGTGTGTAGTACTATGTGCACTCTATTACATGTACCAGGATG-ATA-
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GGATGAAAAT
* * * ***
32983296 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGAT-AGCTT
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGAAAAT
* * * *
32983346 CGATCACGTGTGTAGTACTATGTGCAGACTACTACGTGTATCGGATGAAAAT
1 -GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGAAAAT
* * *
32983398 GGTCACATGTGTAGTACTATTTGCAGGCTACTATGTGAACCGG
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
32983441 GTATCATTTA
Statistics
Matches: 192, Mismatches: 47, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
49 6 0.03
50 71 0.37
51 108 0.56
52 7 0.04
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGAAAAT
Found at i:32983327 original size:101 final size:100
Alignment explanation
Indices: 32983147--32983430 Score: 318
Period size: 101 Copynumber: 2.8 Consensus size: 100
32983137 CGTTGCTAGG
* * * * **
32983147 TCACATGTGTAGTACTATGTGTAGGCTACTATGTGTACCGGAATGATAGGTTGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGACTACTACGTGTACCGG-ATGATAGGTCACATGTGTAGTAC
** * *
32983212 TATGTGCAGGCTACTACGCGTGTCGGATGAAAAT-GG
65 TATGTGCAGGCTACTACGCGTACCAGAT-AAAATCGA
* ** * *
32983248 TTACGTGTGTAGTACTATGTGCACTCTATTACATGTACCAGGATGATAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGACTACTACGTGTACC-GGATGATAGGTCACATGTGTAGTAC
* ***
32983313 TATGTGCAGGCTACTATGCGTACCAGATAGCTTCGA
65 TATGTGCAGGCTACTACGCGTACCAGATAAAATCGA
* *
32983349 TCACGTGTGTAGTACTATGTGCAGACTACTACGTGTATCGGATGAAAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGACTACTACGTGTACCGGATG-ATA-GGTCACATGTGTAGTA
*
32983414 CTATTTGCAGGCTACTA
64 CTATGTGCAGGCTACTA
32983431 TGTGAACCGG
Statistics
Matches: 153, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
100 7 0.05
101 112 0.73
102 34 0.22
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (100 bp):
TCACGTGTGTAGTACTATGTGCAGACTACTACGTGTACCGGATGATAGGTCACATGTGTAGTACT
ATGTGCAGGCTACTACGCGTACCAGATAAAATCGA
Found at i:32988367 original size:20 final size:21
Alignment explanation
Indices: 32988328--32988367 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
32988318 TTCATTGAAT
*
32988328 ATTTTGTTTGCTAGTAGTTTC
1 ATTTAGTTTGCTAGTAGTTTC
*
32988349 ATTTAGTTTTCTA-TAGTTT
1 ATTTAGTTTGCTAGTAGTTT
32988368 TAGTGTGAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.17, C:0.07, G:0.15, T:0.60
Consensus pattern (21 bp):
ATTTAGTTTGCTAGTAGTTTC
Found at i:33000436 original size:69 final size:69
Alignment explanation
Indices: 33000363--33000897 Score: 383
Period size: 69 Copynumber: 7.8 Consensus size: 69
33000353 CAAGCTTTGG
* * ** * ** *
33000363 TTTTACAACTGGGAGCTTTACTCTCGTTATTTATTTTAGAGGCTGCGAATCTTCTCCTGCGAACC
1 TTTTACAGCTGGGAGCTTTACTCTCGCTAACTGTTTTAGAGGCTGCGGCTCTTCACCTGCGAACC
*
33000428 TTGT
66 TTAT
* * * * * * **
33000432 TTTTACAGCTGGGAGCTTTGCTCTCGCTAATTGTATTAGAGGCTGTGGCTTTTCGCCTATGAACC
1 TTTTACAGCTGGGAGCTTTACTCTCGCTAACTGTTTTAGAGGCTGCGGCTCTTCACCTGCGAACC
*
33000497 TTGT
66 TTAT
* ** * * * * * *
33000501 TTTCATGGTTGGGAGCTTTACTCTCGCTAATTGTTTTAAAGGCTGCAGCT-TATCACCTACAAAC
1 TTTTACAGCTGGGAGCTTTACTCTCGCTAACTGTTTTAGAGGCTGCGGCTCT-TCACCTGCGAAC
33000565 CTTAT
65 CTTAT
* * * * * * * * *
33000570 TTTTTCAACTAGGAGGTTTACTCCCGCTAACTGTTTTAGAGGCTACGGCTCTTCGCCTGTGAACA
1 TTTTACAGCTGGGAGCTTTACTCTCGCTAACTGTTTTAGAGGCTGCGGCTCTTCACCTGCGAACC
*
33000635 TTGT
66 TTAT
* * * * * ** *
33000639 TTTCACAGCTGGTAGCTTTA--CTCGTTAACTATTTTAGTGGCTGCGGCTCTTTGCCTGCGAGCC
1 TTTTACAGCTGGGAGCTTTACTCTCGCTAACTGTTTTAGAGGCTGCGGCTCTTCACCTGCGAACC
33000702 TTAT
66 TTAT
* * * * * * *
33000706 TTTCATAGTTGGGAGCTTTGCTCTTGCTAACTGTTTTAGAGGCTGCGACTCTTCACCTGCAAACC
1 TTTTACAGCTGGGAGCTTTACTCTCGCTAACTGTTTTAGAGGCTGCGGCTCTTCACCTGCGAACC
33000771 TTAT
66 TTAT
* * * * * * * ** **
33000775 TTTTACTGTTGAGAGCTTTGCTCTCGCTAACTATTTTAGAGGATACGGCTCTTTGCCTATGAACC
1 TTTTACAGCTGGGAGCTTTACTCTCGCTAACTGTTTTAGAGGCTGCGGCTCTTCACCTGCGAACC
*
33000840 TTGT
66 TTAT
* **** * * * *
33000844 TTTCATTTTTGGGAGCTTTGCTCTCACTAACTATTTTAAAGGCTGCGGCTCTTC
1 TTTTACAGCTGGGAGCTTTACTCTCGCTAACTGTTTTAGAGGCTGCGGCTCTTC
33000898 GTCTGCAAAC
Statistics
Matches: 364, Mismatches: 98, Indels: 8
0.77 0.21 0.02
Matches are distributed among these distances:
67 53 0.15
68 1 0.00
69 309 0.85
70 1 0.00
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.39
Consensus pattern (69 bp):
TTTTACAGCTGGGAGCTTTACTCTCGCTAACTGTTTTAGAGGCTGCGGCTCTTCACCTGCGAACC
TTAT
Found at i:33000751 original size:205 final size:206
Alignment explanation
Indices: 33000375--33000898 Score: 518
Period size: 205 Copynumber: 2.5 Consensus size: 206
33000365 TTACAACTGG
* * ** * ** * * *
33000375 GAGCTTTACTCTCGTTATTTATTTTAGAGGCTGCGAATCTTCTCCTGCGAACCTTGTTTTTACAG
1 GAGCTTTACTCCCGCTAACTATTTTAGAGGCTACGGCTCTTCGCCTGTGAACCTTGTTTTCACAG
* * * * * *
33000440 CTGGGAGCTTTGCTCTCGCTAATTGTATTAGAGGCTGTGGCTTTTCGCCTATGAACCTTGTTTTC
66 CTGGGAGCTTT-CACTCGCTAACTATATTAGAGGCTGCGGCTTTTCGCCTACGAACCTTATTTTC
* *
33000505 ATGGTTGGGAGCTTTACTCTCGCTAATTGTTTTAAAGGCTGC-AGCT-TATCACCTACAAACCTT
130 ATAGTTGGGAGCTTTACTCTCGCTAACTGTTTTAAAGGCTGCGA-CTCT-TCACCTACAAACCTT
*
33000568 ATTTTTTCAACTAG-
193 ATTTTTAC-ACTAGA
* * *
33000582 GAGGTTTACTCCCGCTAACTGTTTTAGAGGCTACGGCTCTTCGCCTGTGAACATTGTTTTCACAG
1 GAGCTTTACTCCCGCTAACTATTTTAGAGGCTACGGCTCTTCGCCTGTGAACCTTGTTTTCACAG
* * * * * *
33000647 CTGGTAGCTTT-ACTCGTTAACTATTTTAGTGGCTGCGGCTCTTT-GCCTGCGAGCCTTATTTTC
66 CTGGGAGCTTTCACTCGCTAACTATATTAGAGGCTGCGGCT-TTTCGCCTACGAACCTTATTTTC
* * * *
33000710 ATAGTTGGGAGCTTTGCTCTTGCTAACTGTTTTAGAGGCTGCGACTCTTCACCTGCAAACCTTAT
130 ATAGTTGGGAGCTTTACTCTCGCTAACTGTTTTAAAGGCTGCGACTCTTCACCTACAAACCTTAT
** *
33000775 TTTTACTGTTGA
195 TTTTACACTAGA
* * * * * ***
33000787 GAGCTTTGCTCTCGCTAACTATTTTAGAGGATACGGCTCTTTGCCTATGAACCTTGTTTTCATTT
1 GAGCTTTACTCCCGCTAACTATTTTAGAGGCTACGGCTCTTCGCCTGTGAACCTTGTTTTCACAG
* * * * * *
33000852 TTGGGAGCTTTGCTCTCACTAACTATTTTAAAGGCTGCGGCTCTTCG
66 CTGGGAGCTTT-CACTCGCTAACTATATTAGAGGCTGCGGCTTTTCG
33000899 TCTGCAAACT
Statistics
Matches: 256, Mismatches: 54, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
204 2 0.01
205 160 0.62
206 7 0.03
207 87 0.34
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.39
Consensus pattern (206 bp):
GAGCTTTACTCCCGCTAACTATTTTAGAGGCTACGGCTCTTCGCCTGTGAACCTTGTTTTCACAG
CTGGGAGCTTTCACTCGCTAACTATATTAGAGGCTGCGGCTTTTCGCCTACGAACCTTATTTTCA
TAGTTGGGAGCTTTACTCTCGCTAACTGTTTTAAAGGCTGCGACTCTTCACCTACAAACCTTATT
TTTACACTAGA
Found at i:33012662 original size:22 final size:22
Alignment explanation
Indices: 33012637--33012680 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
33012627 CAAGTTGAGC
33012637 ATTAATATGAATAAATTTAATT
1 ATTAATATGAATAAATTTAATT
33012659 ATTAATATGAATAAATTTAATT
1 ATTAATATGAATAAATTTAATT
33012681 CTTCTGCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (22 bp):
ATTAATATGAATAAATTTAATT
Found at i:33015602 original size:36 final size:35
Alignment explanation
Indices: 33015561--33015630 Score: 113
Period size: 36 Copynumber: 2.0 Consensus size: 35
33015551 TTCAATTTTG
*
33015561 GAAAGTGATAATTTATTATTCAATAAGATACATTTA
1 GAAAGTGATAATTTATCATTCAAT-AGATACATTTA
*
33015597 GAAAGTGATAATTTATCATTCAATAGATATATTT
1 GAAAGTGATAATTTATCATTCAATAGATACATTT
33015631 TCATGGGACA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 9 0.28
36 23 0.72
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (35 bp):
GAAAGTGATAATTTATCATTCAATAGATACATTTA
Found at i:33035955 original size:18 final size:17
Alignment explanation
Indices: 33035917--33035959 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
33035907 ATTAGCCGTT
33035917 TTTATTTATTTTTTTAA
1 TTTATTTATTTTTTTAA
*
33035934 TATT-TTT-TGTTTTTAA
1 T-TTATTTATTTTTTTAA
33035950 TTTATTTATT
1 TTTATTTATT
33035960 ACATTCTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 6
0.72 0.07 0.21
Matches are distributed among these distances:
15 2 0.10
16 12 0.57
17 5 0.24
18 2 0.10
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTATTTATTTTTTTAA
Found at i:33042443 original size:12 final size:11
Alignment explanation
Indices: 33042422--33042461 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
33042412 CCCTTTCTTT
33042422 TTATTTTATTA
1 TTATTTTATTA
33042433 TTATATTTATTA
1 TTAT-TTTATTA
*
33042445 TTACTTTTCTTA
1 TTA-TTTTATTA
33042457 TTATT
1 TTATT
33042462 ATGTTGTTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 6 0.23
12 19 0.73
13 1 0.04
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:33044049 original size:6 final size:6
Alignment explanation
Indices: 33044040--33044112 Score: 62
Period size: 6 Copynumber: 12.5 Consensus size: 6
33044030 GTTTTATAAT
* * * *
33044040 TTTTTA -TTTTA TTTTTTA TTTTTA TTTTTA ATTCTA ATTATA TTTTTA
1 TTTTTA TTTTTA -TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* *
33044088 TTGTTA TTTAT- TTTTTA -TTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTT
33044113 GTCGGACTTA
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
5 14 0.26
6 35 0.65
7 5 0.09
ACGTcount: A:0.21, C:0.01, G:0.01, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:33044063 original size:18 final size:18
Alignment explanation
Indices: 33044040--33044112 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 18
33044030 GTTTTATAAT
33044040 TTTTTATTTTATTTTTTA
1 TTTTTATTTTATTTTTTA
33044058 TTTTTATTTTTAATTCTAATTATA
1 TTTTTA-TTTT-ATT-T--TT-TA
*
33044082 TTTTTATTGTTA-TTTAT-
1 TTTTTATT-TTATTTTTTA
33044099 TTTTTATTTTATTT
1 TTTTTATTTTATTT
33044113 GTCGGACTTA
Statistics
Matches: 46, Mismatches: 1, Indels: 17
0.72 0.02 0.27
Matches are distributed among these distances:
16 3 0.07
17 10 0.22
18 7 0.15
19 5 0.11
20 3 0.07
21 2 0.04
22 1 0.02
23 5 0.11
24 10 0.22
ACGTcount: A:0.21, C:0.01, G:0.01, T:0.77
Consensus pattern (18 bp):
TTTTTATTTTATTTTTTA
Found at i:33053824 original size:28 final size:28
Alignment explanation
Indices: 33053791--33053854 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
33053781 CAATGAAAGT
33053791 TATAAAAAT-TATT-AAACTTTAATAAAAA
1 TATAAAAATAT-TTAAAAC-TTAATAAAAA
*
33053819 TATAAAAATATTTAAAACTTACTAAAAA
1 TATAAAAATATTTAAAACTTAATAAAAA
*
33053847 TAGAAAAA
1 TATAAAAA
33053855 AAAACAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 27 0.84
29 5 0.16
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (28 bp):
TATAAAAATATTTAAAACTTAATAAAAA
Found at i:33054095 original size:19 final size:19
Alignment explanation
Indices: 33054052--33054094 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
33054042 TGGTATGATA
33054052 ATTTTTATAATTCTTTACG
1 ATTTTTATAATTCTTTACG
* *
33054071 AATTTTATATTTCTTTAC-
1 ATTTTTATAATTCTTTACG
33054089 ATTTTT
1 ATTTTT
33054095 TTTTCTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.63
Consensus pattern (19 bp):
ATTTTTATAATTCTTTACG
Found at i:33054148 original size:19 final size:19
Alignment explanation
Indices: 33054124--33054184 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
33054114 CTTTATACAA
*
33054124 TTTTATATATTTTTATGAT
1 TTTTATATATTTTTATAAT
* *
33054143 TTTTATAAAATTTTATAAT
1 TTTTATATATTTTTATAAT
33054162 TTTT-TACTA-TTTTATAAT
1 TTTTATA-TATTTTTATAAT
33054180 ATTTT
1 -TTTT
33054185 TTCTAATTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
18 11 0.31
19 25 0.69
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTTATATATTTTTATAAT
Found at i:33054164 original size:18 final size:18
Alignment explanation
Indices: 33054122--33054179 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
33054112 GACTTTATAC
* *
33054122 AATTTTATATATTTTTAT
1 AATTTTATAAAATTTTAT
*
33054140 GATTTTTATAAAATTTTAT
1 -AATTTTATAAAATTTTAT
* **
33054159 AATTTTTTACTATTTTAT
1 AATTTTATAAAATTTTAT
33054177 AAT
1 AAT
33054180 ATTTTTTCTA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 17 0.53
19 15 0.47
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (18 bp):
AATTTTATAAAATTTTAT
Found at i:33054174 original size:28 final size:28
Alignment explanation
Indices: 33054095--33054184 Score: 85
Period size: 29 Copynumber: 3.1 Consensus size: 28
33054085 TTACATTTTT
* * * *
33054095 TTTTCTAATTTTCTTACGACTTTATACAA
1 TTTTATAATTTT-TTACTATTTTATAAAA
33054124 TTTTAT-ATATTTTTA-TGATTTTTATAAAA
1 TTTTATAAT-TTTTTACT-A-TTTTATAAAA
*
33054153 TTTTATAATTTTTTACTATTTTATAATA
1 TTTTATAATTTTTTACTATTTTATAAAA
33054181 TTTT
1 TTTT
33054185 TTCTAATTCT
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
28 19 0.37
29 29 0.57
30 3 0.06
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (28 bp):
TTTTATAATTTTTTACTATTTTATAAAA
Found at i:33054182 original size:10 final size:10
Alignment explanation
Indices: 33054123--33054184 Score: 60
Period size: 10 Copynumber: 6.5 Consensus size: 10
33054113 ACTTTATACA
33054123 ATTTTAT-AT
1 ATTTTATAAT
*
33054132 ATTTTTATGAT
1 A-TTTTATAAT
*
33054143 -TTTTATAAA
1 ATTTTATAAT
33054152 ATTTTATAAT
1 ATTTTATAAT
*
33054162 -TTTT-TACT
1 ATTTTATAAT
33054170 ATTTTATAAT
1 ATTTTATAAT
33054180 ATTTT
1 ATTTT
33054185 TTCTAATTCT
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
8 3 0.07
9 16 0.37
10 22 0.51
11 2 0.05
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (10 bp):
ATTTTATAAT
Found at i:33054714 original size:92 final size:89
Alignment explanation
Indices: 33054617--33054802 Score: 257
Period size: 92 Copynumber: 2.1 Consensus size: 89
33054607 TTTTAACTTT
* *
33054617 CAAAATGTATTAAAAA-GACCCTCAAACATTTTCAAAAGAAACAATTAAGCCCCTGCTTTTTTTT
1 CAAAATGCATTAAAAATG-CCCTCAAACATTTTCAAAAG-AACAATTAAGCCCCTAC-TTTTTTT
*
33054681 TTGGAACTCAATTGGGTACTTGAACTGC
63 TT-GAACTCAATTGAGTACTTGAACTGC
* * *
33054709 GAAAATGCATTAAAAATGCCCTCAAACTTTTTCAAAAGAGCAATTAAGCCCCTACTTTTTTTTTG
1 CAAAATGCATTAAAAATGCCCTCAAACATTTTCAAAAGAACAATTAAGCCCCTACTTTTTTTTTG
* *
33054774 CACTCAATTGAGTATTTGAACTGC
66 AACTCAATTGAGTACTTGAACTGC
33054798 CAAAA
1 CAAAA
33054803 CGTAAGGTCC
Statistics
Matches: 84, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
89 26 0.31
90 9 0.11
91 15 0.18
92 33 0.39
93 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.32
Consensus pattern (89 bp):
CAAAATGCATTAAAAATGCCCTCAAACATTTTCAAAAGAACAATTAAGCCCCTACTTTTTTTTTG
AACTCAATTGAGTACTTGAACTGC
Found at i:33054966 original size:19 final size:19
Alignment explanation
Indices: 33054939--33054982 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
33054929 TAGAAATCAA
33054939 TAAAATTTAGA-AAAAATAT
1 TAAAATTTA-ATAAAAATAT
*
33054958 TAAATTTTAATAAAAATAT
1 TAAAATTTAATAAAAATAT
*
33054977 AAAAAT
1 TAAAAT
33054983 ATTTTAATCT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (19 bp):
TAAAATTTAATAAAAATAT
Found at i:33055020 original size:11 final size:12
Alignment explanation
Indices: 33054996--33055020 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33054986 TTAATCTATT
33054996 AAAAATTAGAAA
1 AAAAATTAGAAA
33055008 AAAAATTAGAAA
1 AAAAATTAGAAA
33055020 A
1 A
33055021 TTTTATAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAAATTAGAAA
Found at i:33055135 original size:10 final size:10
Alignment explanation
Indices: 33055109--33055142 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
33055099 CAAAAGATGC
33055109 ATTAATTTTT
1 ATTAATTTTT
*
33055119 GTATAATTTTT
1 AT-TAATTTTT
33055130 ATTAATTTTT
1 ATTAATTTTT
33055140 ATT
1 ATT
33055143 TTTTTATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (10 bp):
ATTAATTTTT
Found at i:33055282 original size:20 final size:18
Alignment explanation
Indices: 33055259--33055298 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
33055249 GGTTAAAGGG
33055259 TATTTTTAATGCATTTTATA
1 TATTTTTAATG-ATTTT-TA
*
33055279 TATTTTTTATGATTTTTA
1 TATTTTTAATGATTTTTA
33055297 TA
1 TA
33055299 ACATTTTGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 5 0.26
20 10 0.53
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.65
Consensus pattern (18 bp):
TATTTTTAATGATTTTTA
Found at i:33055293 original size:19 final size:19
Alignment explanation
Indices: 33055259--33055362 Score: 56
Period size: 19 Copynumber: 5.5 Consensus size: 19
33055249 GGTTAAAGGG
*
33055259 TATTTTTAATGCATTTTATA
1 TATTTTTTATG-ATTTTATA
33055279 TATTTTTTATGATTTT-TA
1 TATTTTTTATGATTTTATA
***
33055297 TAACATTT-TGCAATTTT-TA
1 TATTTTTTATG--ATTTTATA
*
33055316 TATTTTTTACGATATTTATA
1 TATTTTTTATGAT-TTTATA
* * *
33055336 -ATTTATTCT-ATTTTAAA
1 TATTTTTTATGATTTTATA
*
33055353 TAATTTTTAT
1 TATTTTTTAT
33055363 TAAAATTTAT
Statistics
Matches: 63, Mismatches: 15, Indels: 14
0.68 0.16 0.15
Matches are distributed among these distances:
17 7 0.11
18 17 0.27
19 26 0.41
20 13 0.21
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.62
Consensus pattern (19 bp):
TATTTTTTATGATTTTATA
Found at i:33056425 original size:24 final size:24
Alignment explanation
Indices: 33056398--33056449 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
33056388 TTAGTAAGTC
*
33056398 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
33056422 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
33056446 AAAT
1 AAAT
33056450 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:33058393 original size:24 final size:25
Alignment explanation
Indices: 33058366--33058418 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
33058356 TTAGTGAGTC
*
33058366 AAATCA-ACTATACTAATAAAGGCT
1 AAATCATACTATACTAATAAAGACT
* *
33058390 AAAT-ATATTATACTAATAAATACT
1 AAATCATACTATACTAATAAAGACT
33058414 AAATC
1 AAATC
33058419 TTCTAGAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.53, C:0.13, G:0.04, T:0.30
Consensus pattern (25 bp):
AAATCATACTATACTAATAAAGACT
Found at i:33095870 original size:16 final size:15
Alignment explanation
Indices: 33095823--33095870 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
33095813 TTAATATTCT
33095823 GCATTAAACAACA-A
1 GCATTAAACAACAGA
*
33095837 -CATTAAACAATAGCA
1 GCATTAAACAACAG-A
33095852 GCATTAAACAACAGTA
1 GCATTAAACAACAG-A
33095868 GCA
1 GCA
33095871 AAACACATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 11 0.39
15 1 0.04
16 16 0.57
ACGTcount: A:0.52, C:0.21, G:0.10, T:0.17
Consensus pattern (15 bp):
GCATTAAACAACAGA
Found at i:33097933 original size:18 final size:18
Alignment explanation
Indices: 33097910--33097944 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
33097900 TCTTTTTTTT
33097910 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTT-TCAATC
33097928 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTTTCAAT
33097945 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (18 bp):
TCAATTTCTTTTTCAATC
Found at i:33097941 original size:6 final size:6
Alignment explanation
Indices: 33097932--33098040 Score: 76
Period size: 6 Copynumber: 17.7 Consensus size: 6
33097922 TCAATCTCAA
* * * ** **
33097932 TTTCTT TTTCAAT TTTCTTT TCTTCAT TTTCTT TTTCTC TCACTT TTTCGA
1 TTTCTT TTTC-TT TTTC-TT T-TTCTT TTTCTT TTTCTT TTTCTT TTTCTT
* ** *
33097983 TTTCTT TTTCTT TTCCAA TTTCTT TTTCTT TTT-TAT TTTCGT TTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCT-T TTTCTT TTTCTT
33098031 TTTCTT TTTC
1 TTTCTT TTTC
33098041 ATTACAATGT
Statistics
Matches: 76, Mismatches: 23, Indels: 8
0.71 0.21 0.07
Matches are distributed among these distances:
5 1 0.01
6 63 0.83
7 9 0.12
8 3 0.04
ACGTcount: A:0.07, C:0.19, G:0.02, T:0.72
Consensus pattern (6 bp):
TTTCTT
Found at i:33098039 original size:18 final size:18
Alignment explanation
Indices: 33097932--33098040 Score: 85
Period size: 18 Copynumber: 5.9 Consensus size: 18
33097922 TCAATCTCAA
33097932 TTTCTTTTTCAATTTTCTTT
1 TTTCTTTTTC-ATTTTC-TT
* * *
33097952 TCTTCATTTTCTTTTTCTC
1 T-TTCTTTTTCATTTTCTT
**
33097971 TCACTTTTTCGA-TTTCTT
1 TTTCTTTTTC-ATTTTCTT
* *
33097989 TTTCTTTTCCAATTTCTT
1 TTTCTTTTTCATTTTCTT
* *
33098007 TTTCTTTTTTATTTTCGT
1 TTTCTTTTTCATTTTCTT
*
33098025 TTTCTTTTTCTTTTTC
1 TTTCTTTTTCATTTTC
33098041 ATTACAATGT
Statistics
Matches: 69, Mismatches: 17, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
17 1 0.01
18 52 0.75
19 2 0.03
20 6 0.09
21 8 0.12
ACGTcount: A:0.07, C:0.19, G:0.02, T:0.72
Consensus pattern (18 bp):
TTTCTTTTTCATTTTCTT
Found at i:33098907 original size:17 final size:17
Alignment explanation
Indices: 33098887--33098921 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
33098877 TACTTCGTAC
*
33098887 TCCTTTTTTTTTGAATT
1 TCCTTTTTTTTCGAATT
33098904 TCCTTTTTTTTCGAATT
1 TCCTTTTTTTTCGAATT
33098921 T
1 T
33098922 TTTTTTCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.11, C:0.14, G:0.06, T:0.69
Consensus pattern (17 bp):
TCCTTTTTTTTCGAATT
Found at i:33098927 original size:17 final size:16
Alignment explanation
Indices: 33098889--33098927 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
33098879 CTTCGTACTC
33098889 CTTTTTTTTTGAATTT
1 CTTTTTTTTTGAATTT
*
33098905 CCTTTTTTTTCGAATTT
1 -CTTTTTTTTTGAATTT
33098922 -TTTTTT
1 CTTTTTT
33098928 CAATTACAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 6 0.29
17 15 0.71
ACGTcount: A:0.10, C:0.10, G:0.05, T:0.74
Consensus pattern (16 bp):
CTTTTTTTTTGAATTT
Found at i:33100811 original size:14 final size:14
Alignment explanation
Indices: 33100794--33100827 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
33100784 ATTTTCATAA
33100794 GTATATTATGTATT
1 GTATATTATGTATT
33100808 GTATATTATGTATT
1 GTATATTATGTATT
33100822 GTATAT
1 GTATAT
33100828 ATATAAGCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.56
Consensus pattern (14 bp):
GTATATTATGTATT
Found at i:33103781 original size:14 final size:14
Alignment explanation
Indices: 33103762--33103789 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
33103752 TAAAGTTATA
33103762 TTTAATAATTCATT
1 TTTAATAATTCATT
33103776 TTTAATAATTCATT
1 TTTAATAATTCATT
33103790 AATAAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:33106560 original size:21 final size:22
Alignment explanation
Indices: 33106531--33106574 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
33106521 AAAAGATGTC
33106531 ACTTGAATAATTATATCT-TTT
1 ACTTGAATAATTATATCTATTT
* *
33106552 ACTTTAATAGTTATATCTATTT
1 ACTTGAATAATTATATCTATTT
33106574 A
1 A
33106575 AAACATATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.34, C:0.09, G:0.05, T:0.52
Consensus pattern (22 bp):
ACTTGAATAATTATATCTATTT
Found at i:33108205 original size:19 final size:20
Alignment explanation
Indices: 33108181--33108218 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
33108171 AGCTTTGCTG
33108181 AACAAA-TTACAATTGAACT
1 AACAAAGTTACAATTGAACT
*
33108200 AACAAAGTTACATTTGAAC
1 AACAAAGTTACAATTGAAC
33108219 AAAACACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.50, C:0.16, G:0.08, T:0.26
Consensus pattern (20 bp):
AACAAAGTTACAATTGAACT
Found at i:33133215 original size:17 final size:17
Alignment explanation
Indices: 33133193--33133225 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
33133183 ATTCTTTGAG
33133193 AATTGCCAC-AGCATTTC
1 AATTGCC-CTAGCATTTC
33133210 AATTGCCCTAGCATTT
1 AATTGCCCTAGCATTT
33133226 TTTCATTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.07
17 14 0.93
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.33
Consensus pattern (17 bp):
AATTGCCCTAGCATTTC
Found at i:33145003 original size:68 final size:68
Alignment explanation
Indices: 33144883--33145079 Score: 191
Period size: 68 Copynumber: 2.9 Consensus size: 68
33144873 CTAGATCGCA
* * *
33144883 ATCCTAGT-GAACTTCAAATGTTTTCATAGCCCAGCTATGGTCTTACACAATATGGTGTCATATT
1 ATCCTAGTAG-ACTTCAAATGTTTCCATAGCCCAGCTATGATCTTACACAATATAGTGTCATATT
33144947 TACT
65 TACT
* * * * * * *
33144951 GTCCTAGTAGACTTCAAATGTTTCCATATCCCAGTTATGATTTTATATAATATAGTGTCATGTTT
1 ATCCTAGTAGACTTCAAATGTTTCCATAGCCCAGCTATGATCTTACACAATATAGTGTCATATTT
33145016 ACT
66 ACT
* * * * * ** * *
33145019 ATCCTGGCAGACTTCACATGTTGCAATAATCCAACTATGTTCTTACACAATA-AGATGTCAT
1 ATCCTAGTAGACTTCAAATGTTTCCATAGCCCAGCTATGATCTTACACAATATAG-TGTCAT
33145080 GATTATTGTC
Statistics
Matches: 103, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
67 2 0.02
68 100 0.97
69 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (68 bp):
ATCCTAGTAGACTTCAAATGTTTCCATAGCCCAGCTATGATCTTACACAATATAGTGTCATATTT
ACT
Found at i:33145080 original size:68 final size:67
Alignment explanation
Indices: 33144893--33145101 Score: 163
Period size: 68 Copynumber: 3.1 Consensus size: 67
33144883 ATCCTAGTGA
* * * * * * *
33144893 ACTTCAAATGTTTTC-ATAGCCCAGCTATGGTCTTACACAATATGGTGTCATATTTACTGTCCTA
1 ACTTCAAATG-TTGCAATATCCCAACTATGTTCTTACACAATA-AGTGTCATGTTTACTATCCTA
*
33144957 GTAG
64 GCAG
* * ** * * *
33144961 ACTTCAAATGTTTCCATATCCCAGTTATGATT-TTATATAATATAGTGTCATGTTTACTATCCTG
1 ACTTCAAATGTTGCAATATCCCAACTATG-TTCTTACACAATA-AGTGTCATGTTTACTATCCTA
33145025 GCAG
64 GCAG
* * * *
33145029 ACTTCACATGTTGCAATAAT-CCAACTATGTTCTTACACAATAAGATGTCATGATTATTGTCCTA
1 ACTTCAAATGTTGCAAT-ATCCCAACTATGTTCTTACACAATAAG-TGTCATGTTTACTATCCTA
*
33145093 ACAG
64 GCAG
33145097 ACTTC
1 ACTTC
33145102 TGATTCTGAG
Statistics
Matches: 114, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
67 8 0.07
68 103 0.90
69 3 0.03
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.37
Consensus pattern (67 bp):
ACTTCAAATGTTGCAATATCCCAACTATGTTCTTACACAATAAGTGTCATGTTTACTATCCTAGC
AG
Found at i:33167281 original size:51 final size:50
Alignment explanation
Indices: 33167069--33167408 Score: 319
Period size: 51 Copynumber: 6.7 Consensus size: 50
33167059 TATCATTCGA
* * * *
33167069 TACACGTAGTAGCCTTCACATAGTACTACACACATGATCAAGTTTTATGGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAA-ATTTATCGG
* *
33167120 T-CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTT-TACGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAATTTAT-CGG
* * *
33167169 TTCACCTAGTAGCCTTCACATAGTACTACACACGTAACCAAAGCTTT-TCGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAA--TTTATCGG
* * * * *
33167220 TACACATAGTAGCCTTCA-ATTAGTACTACAAATGTGACCATCATTTATCGA
1 TACACGTAGTAGCCTTCACA-TAGTACTACACACGTGACCA-AATTTATCGG
* * * * *
33167271 TTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTTGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAA-TTTATCGG
* * * * * * *
33167322 TACACATTGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATAGA
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AATTTATCGG
* * *
33167373 TACACGTAGTAGCCTTTACACAATACTACACACGTG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTG
33167409 TTCATCGATA
Statistics
Matches: 237, Mismatches: 42, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
48 1 0.00
49 6 0.03
50 79 0.33
51 144 0.61
52 7 0.03
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (50 bp):
TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAATTTATCGG
Found at i:33167299 original size:102 final size:101
Alignment explanation
Indices: 33167065--33167408 Score: 417
Period size: 102 Copynumber: 3.4 Consensus size: 101
33167055 CTTTTATCAT
* * * * *
33167065 TCGATACACGTAGTAGCCTTCACATAGTACTACACACATGATC-AAGTTTTATGGGT-CACGTAG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTT-T-GGTACACATAG
* * ***
33167128 TAGCCTTCACA-TAGTACTACACACGTGATCAAGTTTTA
64 TAGCCTTCA-ATTAGTACTACACATGTGACCATCATTTA
* * * * *
33167166 -CGGTTCACCTAGTAGCCTTCACATAGTACTACACACGTAACCAAAGCTTTTCGGTACACATAGT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTT-GGTACACATAGT
*
33167230 AGCCTTCAATTAGTACTACAAATGTGACCATCATTTA
65 AGCCTTCAATTAGTACTACACATGTGACCATCATTTA
* *
33167267 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTTGGTACACATTGT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTT-TTGGTACACATAGT
*
33167332 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
65 AGCCTTCAATTAGTACTACACATGTGACCATCATTTA
* * *
33167369 TAGATACACGTAGTAGCCTTTACACAATACTACACACGTG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
33167409 TTCATCGATA
Statistics
Matches: 212, Mismatches: 26, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
100 41 0.19
101 42 0.20
102 127 0.60
103 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (101 bp):
TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTGGTACACATAGTA
GCCTTCAATTAGTACTACACATGTGACCATCATTTA
Done.