Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 111 of 205
Found at i:33173639 original size:146 final size:146
Alignment explanation
Indices: 33173375--33173667 Score: 550
Period size: 146 Copynumber: 2.0 Consensus size: 146
33173365 AGATACCTAA
* *
33173375 GATTTGAGGGTTTAATAATTGAAAAAATAAAATTTAATAACAAAAGGATATACACTCAGATAATG
1 GATTTGAGGGTTTAATAATTGAAAAAATAAAATTTAATAACAAAAGGATAAACACTCAGATAATA
33173440 TTTTTAATCTAACTATAGAACTTTGAATCTTGCCGAAAGTATTTAGTTAATCTAAGCTGCGATTA
66 TTTTTAATCTAACTATAGAACTTTGAATCTTGCCGAAAGTATTTAGTTAATCTAAGCTGCGATTA
*
33173505 GACTGCGTTTCACTAT
131 GACTGCGTTCCACTAT
*
33173521 GATTTGAGGGTTTAATAATTGAAAATATAAAATTTAATAACAAAAGGATAAACACTCAGATAATA
1 GATTTGAGGGTTTAATAATTGAAAAAATAAAATTTAATAACAAAAGGATAAACACTCAGATAATA
33173586 TTTTTAATCTAACTATAGAACTTTGAATCTTGCCGAAAGTATTTAGTTAATCTAAGCTGCGATTA
66 TTTTTAATCTAACTATAGAACTTTGAATCTTGCCGAAAGTATTTAGTTAATCTAAGCTGCGATTA
33173651 GACTGCGTTCCACTAT
131 GACTGCGTTCCACTAT
33173667 G
1 G
33173668 TCATGGTTTT
Statistics
Matches: 143, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
146 143 1.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (146 bp):
GATTTGAGGGTTTAATAATTGAAAAAATAAAATTTAATAACAAAAGGATAAACACTCAGATAATA
TTTTTAATCTAACTATAGAACTTTGAATCTTGCCGAAAGTATTTAGTTAATCTAAGCTGCGATTA
GACTGCGTTCCACTAT
Found at i:33175525 original size:16 final size:17
Alignment explanation
Indices: 33175504--33175538 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
33175494 TTAATTTCCA
33175504 TAATGTAATTATTT-TT
1 TAATGTAATTATTTATT
33175520 TAATGTAATTATTTATT
1 TAATGTAATTATTTATT
33175537 TA
1 TA
33175539 TTTATTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (17 bp):
TAATGTAATTATTTATT
Found at i:33188166 original size:44 final size:42
Alignment explanation
Indices: 33188103--33188807 Score: 324
Period size: 44 Copynumber: 16.2 Consensus size: 42
33188093 GATCGCATCT
* * *
33188103 AGTCTGATCTCCCTAAAGTTGTAGTGGAGCAGACTAAGTAAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AAGCA
33188147 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAAATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAAA--GCA
* * * * *
33188192 AATCTTATCTCCCTAAAGTTACAGTAGAGCAGA-TTAAAGCCGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAG-C-A
* * * * * *
33188235 TAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTT
1 -AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGC-A
* * * * *** * *
33188279 GGATCTTATCTCTCTGAAGTTGTAG-AGAGCAGA-TCGCATCT
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCA
* * *
33188320 AGTCTGATCTCCCTAAAGTTGTAGTGGAGCAGACTAAGTAAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AAGCA
33188364 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAAATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAAA--GCA
* * * * *
33188409 AATCTTATCTCCCTAAAGTTACAGTAGAGCAGA-TTAAAGCCGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAG-C-A
* * * * * *
33188452 TAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTT
1 -AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGC-A
* * * * *** * *
33188496 GGATCTTATCTCTCTGAAGTTACAG-AGAGCAGA-TCGCATCT
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCA
*
33188537 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AAGCA
* * * *
33188581 AGTCTTATC-CTCTTGAAGTTGCAAT-GAGGCAAACTGAAGATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AA-A-AGCA
* * *
33188626 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGA-TTAAAGTCGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAG-C-A
* * * * * * * *
33188669 TAATCCTATATTCCTGAAGTTGCAGTGGAGCGGATTAAAATCTT
1 -AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGC-A
* ** * *** * *
33188713 GGATCTTATCTCTATGAAGTTGCAG-AGAGCAGA-TCGCATCT
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCA
33188754 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AAGCA
33188798 AGTCTTATCT
1 AGTCTTATCT
33188808 TTCTAAAATC
Statistics
Matches: 499, Mismatches: 115, Indels: 94
0.70 0.16 0.13
Matches are distributed among these distances:
40 58 0.12
41 30 0.06
42 17 0.03
43 41 0.08
44 244 0.49
45 100 0.20
46 9 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (42 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCA
Found at i:33188392 original size:217 final size:217
Alignment explanation
Indices: 33188017--33188806 Score: 1355
Period size: 217 Copynumber: 3.6 Consensus size: 217
33188007 TAGGTGGCCA
* * **
33188017 ATAATCCTATCTTCCTGAAGTTACAGTACAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* *
33188082 TGTAGAGAGCAGATCGCATCTAGTCTGATCTCCCTAAAGTTGTAGTGGAGCAGACTAAGTAAGCA
66 TGCAGAGAGCAGATCGCATCTAGTCTGATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCA
33188147 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAAATGGCAAATCTTATCTCCCTAAAGTT
131 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAAATGGCAAATCTTATCTCCCTAAAGTT
33188212 ACAGTAGAGCAGATTAAAGCCG
196 ACAGTAGAGCAGATTAAAGCCG
33188234 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* *
33188299 TGTAGAGAGCAGATCGCATCTAGTCTGATCTCCCTAAAGTTGTAGTGGAGCAGACTAAGTAAGCA
66 TGCAGAGAGCAGATCGCATCTAGTCTGATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCA
33188364 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAAATGGCAAATCTTATCTCCCTAAAGTT
131 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAAATGGCAAATCTTATCTCCCTAAAGTT
33188429 ACAGTAGAGCAGATTAAAGCCG
196 ACAGTAGAGCAGATTAAAGCCG
33188451 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* * * *
33188516 TACAGAGAGCAGATCGCATCTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
66 TGCAGAGAGCAGATCGCATCTAGTCTGATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* * * *
33188581 AGTCTTATCCTCTTGAAGTTGCAATGAGGCAAACTGAAGATGGCAAATCTTATCTCCCTAAAGTT
131 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAAATGGCAAATCTTATCTCCCTAAAGTT
* * *
33188646 GCAGTGGAGCAGATTAAAGTCG
196 ACAGTAGAGCAGATTAAAGCCG
* * * *
33188668 ATAATCCTATATTCCTGAAGTTGCAGTGGAGCGGATTAAAATCTTGGATCTTATCTCTATGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* *
33188733 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
66 TGCAGAGAGCAGATCGCATCTAGTCTGATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCA
33188798 AGTCTTATC
131 AGTCTTATC
33188807 TTTCTAAAAT
Statistics
Matches: 550, Mismatches: 23, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
217 550 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (217 bp):
ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
TGCAGAGAGCAGATCGCATCTAGTCTGATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCA
AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAAATGGCAAATCTTATCTCCCTAAAGTT
ACAGTAGAGCAGATTAAAGCCG
Found at i:33190332 original size:18 final size:18
Alignment explanation
Indices: 33190311--33190345 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
33190301 TTAATTTCCA
33190311 TAATGTAATTATTTTTTT
1 TAATGTAATTATTTTTTT
33190329 TAATGTAATTATTTTTT
1 TAATGTAATTATTTTTT
33190346 ATATATATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.66
Consensus pattern (18 bp):
TAATGTAATTATTTTTTT
Found at i:33197959 original size:23 final size:23
Alignment explanation
Indices: 33197925--33197975 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
33197915 GCATCTATAT
*
33197925 TGTAATATCCCGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
33197948 TGTAATACCCCGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
*
33197971 AGTAA
1 TGTAA
33197976 GAAAGTAGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (23 bp):
TGTAATACCCCGAAAATTACTAC
Found at i:33203342 original size:18 final size:18
Alignment explanation
Indices: 33203319--33203361 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
33203309 TCCAAAAAGA
**
33203319 TCAAAATATAAAATGATT
1 TCAAAATATAAAAAAATT
33203337 TCAAAATATAAAAAAATT
1 TCAAAATATAAAAAAATT
33203355 TCAAAAT
1 TCAAAAT
33203362 TCAATGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.30
Consensus pattern (18 bp):
TCAAAATATAAAAAAATT
Found at i:33204726 original size:22 final size:22
Alignment explanation
Indices: 33204698--33204753 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
33204688 TAATTTCTAC
*
33204698 AATTTTAATTTATAAACCCTTG
1 AATTTTAATTTATAAACCCATG
*
33204720 -ATATTTAATTTATACACCCATG
1 AAT-TTTAATTTATAAACCCATG
33204742 AATTTTAATTTA
1 AATTTTAATTTA
33204754 CACCTAAGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 2 0.07
22 26 0.87
23 2 0.07
ACGTcount: A:0.38, C:0.12, G:0.04, T:0.46
Consensus pattern (22 bp):
AATTTTAATTTATAAACCCATG
Found at i:33208708 original size:24 final size:24
Alignment explanation
Indices: 33208676--33208727 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
33208666 TTTGTATTAC
33208676 TGATTGCATGTTCAGCATGTCTTT
1 TGATTGCATGTTCAGCATGTCTTT
33208700 TGATTGCATGTTCAGCATGTCTTT
1 TGATTGCATGTTCAGCATGTCTTT
33208724 TGAT
1 TGAT
33208728 ACTGTTAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.17, C:0.15, G:0.21, T:0.46
Consensus pattern (24 bp):
TGATTGCATGTTCAGCATGTCTTT
Found at i:33210378 original size:21 final size:21
Alignment explanation
Indices: 33210354--33210400 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
33210344 TGTGAGCAAG
33210354 TTATCTAC-ACCAATGAGTGAT
1 TTATCT-CGACCAATGAGTGAT
* *
33210375 TTATCTCGACCGATGAGTGGT
1 TTATCTCGACCAATGAGTGAT
33210396 TTATC
1 TTATC
33210401 CACAACATAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (21 bp):
TTATCTCGACCAATGAGTGAT
Found at i:33210425 original size:45 final size:45
Alignment explanation
Indices: 33210374--33210509 Score: 193
Period size: 45 Copynumber: 3.0 Consensus size: 45
33210364 CAATGAGTGA
*
33210374 TTTATCT-CGACCGATGAGTGGTTTATCCACAACATACTAGTAGCT
1 TTTATCTGC-ACCGATGAGTGGTTTATCCACAACGTACTAGTAGCT
* * * *
33210419 TTTATCTGCACCAATGACTAGTTTATCCACAATGTACTAGTAGCT
1 TTTATCTGCACCGATGAGTGGTTTATCCACAACGTACTAGTAGCT
* *
33210464 TTTATCTGCACCGATGAGTGGTTTATCCACACCGTACTAGCAGCT
1 TTTATCTGCACCGATGAGTGGTTTATCCACAACGTACTAGTAGCT
33210509 T
1 T
33210510 GTTTGCAAAC
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
45 78 0.99
46 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.34
Consensus pattern (45 bp):
TTTATCTGCACCGATGAGTGGTTTATCCACAACGTACTAGTAGCT
Found at i:33210440 original size:26 final size:26
Alignment explanation
Indices: 33210409--33210480 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 26
33210399 TCCACAACAT
33210409 ACTAGTAGCTTTTATCTGCACCAATG
1 ACTAGTAGCTTTTATCTGCACCAATG
33210435 AC---TAG--TTTATC--CA-CAATG
1 ACTAGTAGCTTTTATCTGCACCAATG
*
33210453 TACTAGTAGCTTTTATCTGCACCGATG
1 -ACTAGTAGCTTTTATCTGCACCAATG
33210480 A
1 A
33210481 GTGGTTTATC
Statistics
Matches: 36, Mismatches: 1, Indels: 18
0.65 0.02 0.33
Matches are distributed among these distances:
18 5 0.14
19 4 0.11
21 6 0.17
22 3 0.08
23 3 0.08
24 6 0.17
26 5 0.14
27 4 0.11
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (26 bp):
ACTAGTAGCTTTTATCTGCACCAATG
Found at i:33214707 original size:56 final size:56
Alignment explanation
Indices: 33214621--33214737 Score: 234
Period size: 56 Copynumber: 2.1 Consensus size: 56
33214611 AGGATGAAAC
33214621 TTTGGACCATGTGCTTCGTGGATGTATAGTAGCGTTGTTAATTTGGAAGTGGTTGG
1 TTTGGACCATGTGCTTCGTGGATGTATAGTAGCGTTGTTAATTTGGAAGTGGTTGG
33214677 TTTGGACCATGTGCTTCGTGGATGTATAGTAGCGTTGTTAATTTGGAAGTGGTTGG
1 TTTGGACCATGTGCTTCGTGGATGTATAGTAGCGTTGTTAATTTGGAAGTGGTTGG
33214733 TTTGG
1 TTTGG
33214738 GAGGAGAAAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.17, C:0.09, G:0.34, T:0.40
Consensus pattern (56 bp):
TTTGGACCATGTGCTTCGTGGATGTATAGTAGCGTTGTTAATTTGGAAGTGGTTGG
Found at i:33225823 original size:24 final size:24
Alignment explanation
Indices: 33225808--33225859 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
33225798 AATCAAAGTC
33225808 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
33225832 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
33225856 AAAT
1 AAAT
33225860 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:33230440 original size:40 final size:40
Alignment explanation
Indices: 33230356--33230540 Score: 205
Period size: 40 Copynumber: 4.7 Consensus size: 40
33230346 TTGAATGCTG
* * * *
33230356 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAA
* *
33230396 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAA
* *
33230436 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
* * * *
33230476 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
* *
33230515 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33230541 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 35 0.28
40 82 0.66
41 8 0.06
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
Found at i:33233210 original size:24 final size:24
Alignment explanation
Indices: 33233165--33233219 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
33233155 TCCAATCAAA
**
33233165 GCTAAATACATTATGTTAATAAAT
1 GCTAAATACATTATACTAATAAAT
* *
33233189 GCTAAATATATTATACTCATAAAT
1 GCTAAATACATTATACTAATAAAT
*
33233213 ACTAAAT
1 GCTAAAT
33233220 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.47, C:0.11, G:0.05, T:0.36
Consensus pattern (24 bp):
GCTAAATACATTATACTAATAAAT
Found at i:33234887 original size:131 final size:130
Alignment explanation
Indices: 33234727--33234977 Score: 285
Period size: 131 Copynumber: 1.9 Consensus size: 130
33234717 CAACAACTAA
* ** * * *
33234727 TTTTGTCGTTGTAAATTTTATTAATAATTCACAATGACA-ATTTGTGTCATTGCTATTAATAAGT
1 TTTTGTCGTTATAAATTTTATTAATAATTCACAACAACACA-TT-TGTCATTGCAATGAATAAGC
** *
33234791 AGAAAATTAAATTATGTAACAAC-ATTTCAA-AGTTGCTGCTAATATTTTAACATTTAATAATAC
64 AGAAAATTAAATTACATAACAACAATTT-AAGA-TTGCTGCAAATATTTTAACATTTAATAATAC
33234854 CTTG
127 CTTG
* * *
33234858 TTTTGTTGTTATACATTTTATTACA-AATTCACAACAACACGATTTGTCGTTGCAATGAATAAGC
1 TTTTGTCGTTATAAATTTTATTA-ATAATTCACAACAACAC-ATTTGTCATTGCAATGAATAAGC
* * *
33234922 ATAAAATTAAATTACATAACGACAATTTAAGATTGTTGCAAATATTTTAACATTTA
64 AGAAAATTAAATTACATAACAACAATTTAAGATTGCTGCAAATATTTTAACATTTA
33234978 GCAACAACTT
Statistics
Matches: 100, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
131 91 0.91
132 8 0.08
133 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (130 bp):
TTTTGTCGTTATAAATTTTATTAATAATTCACAACAACACATTTGTCATTGCAATGAATAAGCAG
AAAATTAAATTACATAACAACAATTTAAGATTGCTGCAAATATTTTAACATTTAATAATACCTTG
Found at i:33240427 original size:19 final size:20
Alignment explanation
Indices: 33240395--33240432 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
33240385 CAAGCTGATT
33240395 TTAGCTCAATTTCAGCTCCC
1 TTAGCTCAATTTCAGCTCCC
33240415 TTAGCTC-ATTTCAGCTCC
1 TTAGCTCAATTTCAGCTCC
33240433 AACCAGCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.18, C:0.34, G:0.11, T:0.37
Consensus pattern (20 bp):
TTAGCTCAATTTCAGCTCCC
Found at i:33240636 original size:15 final size:15
Alignment explanation
Indices: 33240626--33240665 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
33240616 AATTTAATAG
33240626 CTATGTTTTTAATTAA
1 CTATGTTTTTAATT-A
* *
33240642 TTATTTTTTTAATTA
1 CTATGTTTTTAATTA
33240657 CTATGTTTT
1 CTATGTTTT
33240666 GTTGCTTATA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.65
Consensus pattern (15 bp):
CTATGTTTTTAATTA
Found at i:33245856 original size:19 final size:20
Alignment explanation
Indices: 33245824--33245861 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
33245814 CAAGCTGATT
33245824 TTAGCTCAATTTCAGCTCCC
1 TTAGCTCAATTTCAGCTCCC
33245844 TTAGCTC-ATTTCAGCTCC
1 TTAGCTCAATTTCAGCTCC
33245862 AACCAGCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.18, C:0.34, G:0.11, T:0.37
Consensus pattern (20 bp):
TTAGCTCAATTTCAGCTCCC
Found at i:33246065 original size:15 final size:15
Alignment explanation
Indices: 33246055--33246094 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
33246045 AATTTAATAG
33246055 CTATGTTTTTAATTAA
1 CTATGTTTTTAATT-A
* *
33246071 TTATTTTTTTAATTA
1 CTATGTTTTTAATTA
33246086 CTATGTTTT
1 CTATGTTTT
33246095 GTTGCTTATA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.65
Consensus pattern (15 bp):
CTATGTTTTTAATTA
Found at i:33251134 original size:13 final size:13
Alignment explanation
Indices: 33251113--33251189 Score: 127
Period size: 13 Copynumber: 5.9 Consensus size: 13
33251103 ACACTCAAAT
33251113 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
*
33251126 TTCTGAAAAGCAC
1 TTCTCAAAAGCAC
33251139 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
* *
33251152 TTCTGAAAAGTAC
1 TTCTCAAAAGCAC
33251165 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
33251178 TTCTCAAAAGCA
1 TTCTCAAAAGCA
33251190 ATGAAGAACT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 58 1.00
ACGTcount: A:0.39, C:0.26, G:0.10, T:0.25
Consensus pattern (13 bp):
TTCTCAAAAGCAC
Found at i:33252900 original size:252 final size:252
Alignment explanation
Indices: 33252181--33252931 Score: 1369
Period size: 251 Copynumber: 3.0 Consensus size: 252
33252171 CGAGATTTGG
* * *
33252181 TTTTTTCCTTCTCTATTTTGTTCCCTTTCGAAGATTCAGTTGGTGCTAAAGTATCATGCAAAATA
1 TTTTTTCCTTCTCTATTTTGTTCCCTTTCGAAGATTCAGTTGATGCTAAACTATCACGCAAAATA
33252246 CCTGCCATTTCTCCTGCTGTTGGATCGTTCTTTTCTCTATTAATAACTTTCATCAAGTCCTCAAT
66 CCTGCCATTTCTCCTGCTGTTGGATCGTTCTTTTCTCTATTAATAACTTTCATCAAGTCCTCAAT
* * *
33252311 TCTTGAAAAACTTTGGGACGATGCATGCTTTTTTCCTGAAATAATGGTTGCACTTGGCCTTTGAA
131 TCTTGAAGAACTTTTGGACGATGCATGCTTTTTTCCTGAAATAGTGGTTGCACTTGGCCTTTGAA
* * *
33252376 CAGAAGTAGCAGTTCTGTTCCCACGTAGATAGCTCATAACTTCAGACAAGTCACTAT
196 CAGAAGTAGCAGTTCTGTTCCCAGGTAGATAGTTCATAATTTCAGACAAGTCACTAT
33252433 TTTTTTCCTTCTCTATTTTGTTCCCTTTCGAAGATTCAGTTGATGCTAAACTATCACGCAAAATA
1 TTTTTTCCTTCTCTATTTTGTTCCCTTTCGAAGATTCAGTTGATGCTAAACTATCACGCAAAATA
*
33252498 CCTGCCA-TTCTCCTGCTGTTGGATCGCTCTTTTCTCTATTAATAACTTTCATCAAGTCCTCAAT
66 CCTGCCATTTCTCCTGCTGTTGGATCGTTCTTTTCTCTATTAATAACTTTCATCAAGTCCTCAAT
*
33252562 TCTTGAAGAACTTTTGGACAATGCATGCTTTTTTCCTGAAATAGTGGTTGCACTTGGCCTTTGAA
131 TCTTGAAGAACTTTTGGACGATGCATGCTTTTTTCCTGAAATAGTGGTTGCACTTGGCCTTTGAA
33252627 CAGAAGTAGCAGTTCTGTTCCCAGGTAGATAGTTCATAATTTCAGACAAGTCACTAT
196 CAGAAGTAGCAGTTCTGTTCCCAGGTAGATAGTTCATAATTTCAGACAAGTCACTAT
33252684 TTTTTTCCTTCTCTATTTTGTTCCCTTTCGAAGATTCAGTTGATGCTAAACTATCACGCAAAATA
1 TTTTTTCCTTCTCTATTTTGTTCCCTTTCGAAGATTCAGTTGATGCTAAACTATCACGCAAAATA
33252749 CCTGCCATTTCTCCTGCTGTTGGATCGTTCTTTTCTCTATTAATAACTTTCATCAAGTCCTCAAT
66 CCTGCCATTTCTCCTGCTGTTGGATCGTTCTTTTCTCTATTAATAACTTTCATCAAGTCCTCAAT
* *
33252814 TCTTGAAGATCTTTTGGACGATGCATGCTTTTTTCATGAAATAGTGGTTGCACTTGGCCTTTGAA
131 TCTTGAAGAACTTTTGGACGATGCATGCTTTTTTCCTGAAATAGTGGTTGCACTTGGCCTTTGAA
*
33252879 CAGAAGTAGCAGTTCTGTTCCCAGGTTGATAGTTCATAATTTCAGACAAGTCA
196 CAGAAGTAGCAGTTCTGTTCCCAGGTAGATAGTTCATAATTTCAGACAAGTCA
33252932 TTTGTACCAT
Statistics
Matches: 482, Mismatches: 16, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
251 243 0.50
252 239 0.50
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (252 bp):
TTTTTTCCTTCTCTATTTTGTTCCCTTTCGAAGATTCAGTTGATGCTAAACTATCACGCAAAATA
CCTGCCATTTCTCCTGCTGTTGGATCGTTCTTTTCTCTATTAATAACTTTCATCAAGTCCTCAAT
TCTTGAAGAACTTTTGGACGATGCATGCTTTTTTCCTGAAATAGTGGTTGCACTTGGCCTTTGAA
CAGAAGTAGCAGTTCTGTTCCCAGGTAGATAGTTCATAATTTCAGACAAGTCACTAT
Found at i:33254797 original size:18 final size:20
Alignment explanation
Indices: 33254754--33254798 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
33254744 AATCATTTAA
33254754 AATTTAAAAAGATATAAATT
1 AATTTAAAAAGATATAAATT
*
33254774 -ATTTAAATAG-TA-AAATT
1 AATTTAAAAAGATATAAATT
33254791 AATTTAAA
1 AATTTAAA
33254799 CTCGAACTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 5 0.22
18 9 0.39
19 9 0.39
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (20 bp):
AATTTAAAAAGATATAAATT
Found at i:33261281 original size:21 final size:21
Alignment explanation
Indices: 33261255--33261307 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
33261245 CATTGTTTCT
* *
33261255 AATCTCATCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
33261276 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
33261297 AATCTCACCGC
1 AATCTCACCGC
33261308 CACCGCTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:33261503 original size:14 final size:14
Alignment explanation
Indices: 33261479--33261516 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
33261469 ATTTGCCTGT
*
33261479 AAAAT-ATTTTTTG
1 AAAATGATTTTTAG
33261492 AAAAATGATTTTTAG
1 -AAAATGATTTTTAG
33261507 AAAATGATTT
1 AAAATGATTT
33261517 ACTTTTCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 15 0.68
15 7 0.32
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.45
Consensus pattern (14 bp):
AAAATGATTTTTAG
Found at i:33262150 original size:25 final size:25
Alignment explanation
Indices: 33262121--33262172 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
33262111 AAGCGTTATC
33262121 CTCCTATTTAAGGATTGGGGTGGGA
1 CTCCTATTTAAGGATTGGGGTGGGA
33262146 CTCCTATTTAAGGATTGGGGTGGGA
1 CTCCTATTTAAGGATTGGGGTGGGA
33262171 CT
1 CT
33262173 ATGAGTAGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.19, C:0.13, G:0.35, T:0.33
Consensus pattern (25 bp):
CTCCTATTTAAGGATTGGGGTGGGA
Found at i:33263468 original size:6 final size:6
Alignment explanation
Indices: 33263457--33263482 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
33263447 AGTTGTAAAG
33263457 TTTTAT TTTTAT TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TT
33263483 ATTTATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:33266931 original size:13 final size:11
Alignment explanation
Indices: 33266909--33266942 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
33266899 AGTATTTCAC
33266909 TTTTTTTTATAA
1 TTTTTTTTAT-A
33266921 TTTTCTTTTATA
1 TTTT-TTTTATA
33266933 TTTTTTTTAT
1 TTTTTTTTAT
33266943 CGTGTCTAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 6 0.29
12 9 0.43
13 6 0.29
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTTTTTATA
Found at i:33273217 original size:40 final size:40
Alignment explanation
Indices: 33273119--33273381 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
33273109 TCCTCGTTCA
* * * ** *
33273119 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
33273158 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
33273198 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
33273238 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
33273278 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
33273318 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
33273358 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
33273382 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:33280883 original size:40 final size:40
Alignment explanation
Indices: 33280785--33281127 Score: 485
Period size: 40 Copynumber: 8.6 Consensus size: 40
33280775 TCCTCGTTCA
* * * * *
33280785 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
33280824 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
33280864 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
33280904 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
33280944 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
33280984 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
33281024 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
33281064 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
33281104 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
33281128 CAGCATTCAA
Statistics
Matches: 280, Mismatches: 20, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
39 37 0.13
40 235 0.84
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:33297867 original size:4 final size:4
Alignment explanation
Indices: 33297858--33297882 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
33297848 ATAGAAGCTT
33297858 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
33297883 CTCTTTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:33299977 original size:29 final size:32
Alignment explanation
Indices: 33299935--33300003 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 32
33299925 TAACTTAGGT
* *
33299935 TTATTTT-TAGTTAA-TTAATT-TTATTATTG
1 TTATTTTATAGTTAATTTAATTATAATTATTA
33299964 TTATTTTATA-TTAATTTAATTAGTAATTATTA
1 TTATTTTATAGTTAATTTAATTA-TAATTATTA
33299996 TTATTTTA
1 TTATTTTA
33300004 GATTTGTACT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 11 0.32
30 8 0.24
32 15 0.44
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (32 bp):
TTATTTTATAGTTAATTTAATTATAATTATTA
Found at i:33304768 original size:19 final size:19
Alignment explanation
Indices: 33304744--33304808 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 19
33304734 AATAGTTAAA
33304744 AAATAAATTTAAATATCAT
1 AAATAAATTTAAATATCAT
* *
33304763 AAATAAATATTCAA-A-CAAA
1 AAATAAAT-TTAAATATC-AT
*
33304782 AAATCAATTTAAATATCAT
1 AAATAAATTTAAATATCAT
33304801 AAATAAAT
1 AAATAAAT
33304809 ATTCAAACAT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
18 5 0.14
19 26 0.72
20 5 0.14
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (19 bp):
AAATAAATTTAAATATCAT
Found at i:33304783 original size:38 final size:38
Alignment explanation
Indices: 33304741--33304817 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
33304731 TAAAATAGTT
33304741 AAAAAATAAATTTAAATATCATAAATAAATATTCAAAC
1 AAAAAATAAATTTAAATATCATAAATAAATATTCAAAC
*
33304779 AAAAAATCAATTTAAATATCATAAATAAATATTCAAAC
1 AAAAAATAAATTTAAATATCATAAATAAATATTCAAAC
33304817 A
1 A
33304818 TTATTCATAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.29
Consensus pattern (38 bp):
AAAAAATAAATTTAAATATCATAAATAAATATTCAAAC
Found at i:33305316 original size:14 final size:14
Alignment explanation
Indices: 33305297--33305323 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
33305287 GTGCCAAAAC
33305297 ATACCACAATTCAA
1 ATACCACAATTCAA
33305311 ATACCACAATTCA
1 ATACCACAATTCA
33305324 TAATCAACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (14 bp):
ATACCACAATTCAA
Found at i:33306411 original size:66 final size:66
Alignment explanation
Indices: 33306305--33306437 Score: 239
Period size: 66 Copynumber: 2.0 Consensus size: 66
33306295 CATGTACTAT
* *
33306305 CTCGAGCCATCGGTATGAACTCCTTCATCGGTACATAGTACCTGATAAATAACTATCAAAGGATG
1 CTCGAGCCATCGGTATGAACTCCTTCACCGGTACATAGTACCTGATAAAAAACTATCAAAGGATG
33306370 C
66 C
*
33306371 CTCGAGCCATCGGTGTGAACTCCTTCACCGGTACATAGTACCTGATAAAAAACTATCAAAGGATG
1 CTCGAGCCATCGGTATGAACTCCTTCACCGGTACATAGTACCTGATAAAAAACTATCAAAGGATG
33306436 C
66 C
33306437 C
1 C
33306438 ATAGCGTCTT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.24
Consensus pattern (66 bp):
CTCGAGCCATCGGTATGAACTCCTTCACCGGTACATAGTACCTGATAAAAAACTATCAAAGGATG
C
Found at i:33306550 original size:45 final size:45
Alignment explanation
Indices: 33306493--33306660 Score: 212
Period size: 45 Copynumber: 3.7 Consensus size: 45
33306483 ATCCTGTTTA
* * * **
33306493 TCAGCCATGGTCTTACTCGTTTCTGACAAATTGCCATAGCGTCTT
1 TCAGCTATGGTCTTATTCGTTTCTGTCATGTTGCCATAGCGTCTT
** * *
33306538 TCAAATATGGTCTTATTCATTTCTGTCATGTTGCCACAGCGTCTT
1 TCAGCTATGGTCTTATTCGTTTCTGTCATGTTGCCATAGCGTCTT
* *
33306583 TTAGCTATGGTCTTATTCGTTT-TCGTCATGTTGCCATAACGTCTT
1 TCAGCTATGGTCTTATTCGTTTCT-GTCATGTTGCCATAGCGTCTT
*
33306628 TCAGCTATGGTCTTATTCGTTTTTGTCATGTTG
1 TCAGCTATGGTCTTATTCGTTTCTGTCATGTTG
33306661 ATGATAACAT
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
44 1 0.01
45 103 0.98
46 1 0.01
ACGTcount: A:0.17, C:0.21, G:0.18, T:0.43
Consensus pattern (45 bp):
TCAGCTATGGTCTTATTCGTTTCTGTCATGTTGCCATAGCGTCTT
Found at i:33309125 original size:19 final size:18
Alignment explanation
Indices: 33309101--33309140 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
33309091 TTTCTCAAGA
*
33309101 ATTTTATAATGAAAATATT
1 ATTTT-TAATGAAAATATC
33309120 A-TTTTAATGAAAATATC
1 ATTTTTAATGAAAATATC
33309137 ATTT
1 ATTT
33309141 CTCAAGAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 13 0.68
18 5 0.26
19 1 0.05
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (18 bp):
ATTTTTAATGAAAATATC
Found at i:33309129 original size:17 final size:17
Alignment explanation
Indices: 33309107--33309140 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
33309097 AAGAATTTTA
*
33309107 TAATGAAAATATTATTT
1 TAATGAAAATATCATTT
33309124 TAATGAAAATATCATTT
1 TAATGAAAATATCATTT
33309141 CTCAAGAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (17 bp):
TAATGAAAATATCATTT
Found at i:33309388 original size:4 final size:4
Alignment explanation
Indices: 33309370--33309406 Score: 56
Period size: 4 Copynumber: 9.0 Consensus size: 4
33309360 GAACAAAGAT
*
33309370 TAAA TAAA AATAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TA-AA TAAA TAAA TAAA TAAA TAAA TAAA
33309407 CAAAAATTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 27 0.90
5 3 0.10
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:33315763 original size:27 final size:28
Alignment explanation
Indices: 33315670--33315763 Score: 124
Period size: 27 Copynumber: 3.5 Consensus size: 28
33315660 TTCACTACAC
33315670 AGGCTTTTCTTT--TGTATTTCGCCACAA
1 AGGCTTTTCTTTCATG-ATTTCGCCACAA
* *
33315697 AGGCTTTCCTTTCATG-TTTCGTCACAA
1 AGGCTTTTCTTTCATGATTTCGCCACAA
33315724 AGGCTTTTCTTTCATGATTT-GCCACAA
1 AGGCTTTTCTTTCATGATTTCGCCACAA
*
33315751 AGGTTTTTCTTTC
1 AGGCTTTTCTTTC
33315764 CTAACGTGTT
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
27 54 0.92
28 3 0.05
29 2 0.03
ACGTcount: A:0.18, C:0.22, G:0.15, T:0.45
Consensus pattern (28 bp):
AGGCTTTTCTTTCATGATTTCGCCACAA
Found at i:33318247 original size:40 final size:40
Alignment explanation
Indices: 33318147--33318411 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
33318137 GCTCCTCGTT
* * * *
33318147 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
33318187 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
33318226 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
33318266 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
33318306 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
33318346 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
33318387 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
33318412 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:33318371 original size:80 final size:80
Alignment explanation
Indices: 33318114--33318411 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
33318104 AAATCACGTA
* ** * * *
33318114 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
33318176 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
33318192 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
33318255 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
33318272 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
33318336 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
33318352 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
33318412 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:33318420 original size:41 final size:41
Alignment explanation
Indices: 33318343--33318420 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
33318333 TTTGTATCTC
* * *
33318343 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
33318384 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
33318421 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:33326191 original size:40 final size:40
Alignment explanation
Indices: 33326091--33326262 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
33326081 GCTCCTCGTT
* * *
33326091 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
33326131 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
33326170 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
33326210 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
33326250 CAAATGCCTTCGG
1 CAAATGCCTTCGG
33326263 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.29
40 79 0.68
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:33326275 original size:80 final size:79
Alignment explanation
Indices: 33326091--33326315 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
33326081 GCTCCTCGTT
* * * * *
33326091 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
33326155 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* * *
33326170 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
** *
33326235 AATTT-GTATCTCGCA
64 AATTTAACAACTCGCA
* * * * *
33326250 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
33326314 GA
63 GA
33326316 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 68 0.56
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAACAACTCGCA
Found at i:33326324 original size:41 final size:41
Alignment explanation
Indices: 33326247--33326324 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
33326237 TTTGTATCTC
* * *
33326247 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
33326288 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
33326325 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:33328384 original size:51 final size:51
Alignment explanation
Indices: 33328319--33328446 Score: 193
Period size: 51 Copynumber: 2.5 Consensus size: 51
33328309 TACCATGACA
* *
33328319 TCTTTCATCCATGGTCTTATGCCATATGCCTTATACCAGACTACCATAGCC
1 TCTTTCATCTATGGTCTTATGCCATATACCTTATACCAGACTACCATAGCC
* * * *
33328370 TCTTTCATCTATGGTTTTATGCCATATACCTTATACTAGACTACCGTAGCT
1 TCTTTCATCTATGGTCTTATGCCATATACCTTATACCAGACTACCATAGCC
*
33328421 TCTTTTATCTATGGTCTTATGCCATA
1 TCTTTCATCTATGGTCTTATGCCATA
33328447 AATCGTCTTC
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 69 1.00
ACGTcount: A:0.23, C:0.26, G:0.12, T:0.40
Consensus pattern (51 bp):
TCTTTCATCTATGGTCTTATGCCATATACCTTATACCAGACTACCATAGCC
Found at i:33330466 original size:20 final size:22
Alignment explanation
Indices: 33330441--33330487 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 22
33330431 TGACTAGACC
*
33330441 AAAAATTTGTAAAAAAA-A-TT
1 AAAAATTAGTAAAAAAATATTT
33330461 AAAAA-TAGTAAAAAAATATTT
1 AAAAATTAGTAAAAAAATATTT
33330482 AAAAAT
1 AAAAAT
33330488 ATATAAGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 10 0.43
20 6 0.26
21 7 0.30
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (22 bp):
AAAAATTAGTAAAAAAATATTT
Found at i:33330475 original size:17 final size:17
Alignment explanation
Indices: 33330453--33330612 Score: 98
Period size: 17 Copynumber: 9.1 Consensus size: 17
33330443 AAATTTGTAA
*
33330453 AAAAAATTAAAAATAGT
1 AAAAAATTAAAAATTGT
*
33330470 --AAAA--AAATATT-T
1 AAAAAATTAAAAATTGT
*
33330482 AAAAATATATAAGAATTGT
1 AAAAA-AT-TAAAAATTGT
* *
33330501 AAAAACATT-TAAATTATT
1 AAAAA-ATTAAAAATT-GT
33330519 AAAAATATTAAAAATTGT
1 AAAAA-ATTAAAAATTGT
*
33330537 AAAAAAATAAAAATTGT
1 AAAAAATTAAAAATTGT
*
33330554 AAAAAATTAAATATTGT
1 AAAAAATTAAAAATTGT
*
33330571 AAATAACTATTAAATATTGTT
1 AAA-AA--ATTAAAAATTG-T
*
33330592 AAAAATATTTTAAAATTGT
1 AAAAA-A-TTAAAAATTGT
33330611 AA
1 AA
33330613 CAAGTTATTA
Statistics
Matches: 113, Mismatches: 16, Indels: 26
0.73 0.10 0.17
Matches are distributed among these distances:
12 1 0.01
13 5 0.04
14 3 0.03
15 5 0.04
17 33 0.29
18 23 0.20
19 18 0.16
20 21 0.19
21 4 0.04
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (17 bp):
AAAAAATTAAAAATTGT
Found at i:33330485 original size:9 final size:9
Alignment explanation
Indices: 33330452--33330600 Score: 67
Period size: 9 Copynumber: 16.0 Consensus size: 9
33330442 AAAATTTGTA
*
33330452 AAAAAAATT
1 AAAAATATT
*
33330461 AAAAATAGTAA
1 AAAAATA-T-T
33330472 AAAAATATTT
1 AAAAATA-TT
33330482 AAAAATATAT
1 AAAAATAT-T
*
33330492 AAGAAT-TGT
1 AAAAATAT-T
*
33330501 AAAAACATT
1 AAAAATATT
* *
33330510 TAAATTATT
1 AAAAATATT
33330519 AAAAATATT
1 AAAAATATT
33330528 AAAAAT-TGT
1 AAAAATAT-T
*
33330537 AAAAA-AAT
1 AAAAATATT
33330545 AAAAAT-TGT
1 AAAAATAT-T
33330554 AAAAA-ATT
1 AAAAATATT
*
33330562 AAATAT-TGT
1 AAAAATAT-T
33330571 AAATAACTATT
1 AAA-AA-TATT
* *
33330582 AAATATTGTT
1 AAA-AATATT
33330592 AAAAATATT
1 AAAAATATT
33330601 TTAAAATTGT
Statistics
Matches: 105, Mismatches: 21, Indels: 28
0.68 0.14 0.18
Matches are distributed among these distances:
8 13 0.12
9 54 0.51
10 22 0.21
11 15 0.14
12 1 0.01
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (9 bp):
AAAAATATT
Found at i:33330485 original size:10 final size:10
Alignment explanation
Indices: 33330441--33330533 Score: 52
Period size: 10 Copynumber: 9.6 Consensus size: 10
33330431 TGACTAGACC
33330441 AAAAAT-TTGT
1 AAAAATATT-T
* *
33330451 AAAAAAAATT
1 AAAAATATTT
**
33330461 AAAAATAGTAA
1 AAAAATA-TTT
33330472 AAAAATATTT
1 AAAAATATTT
*
33330482 AAAAATATAT
1 AAAAATATTT
* *
33330492 AAGAAT-TGT
1 AAAAATATTT
*
33330501 AAAAACATTT
1 AAAAATATTT
*
33330511 -AAATTA-TT
1 AAAAATATTT
33330519 AAAAATA-TT
1 AAAAATATTT
33330528 AAAAAT
1 AAAAAT
33330534 TGTAAAAAAA
Statistics
Matches: 62, Mismatches: 17, Indels: 9
0.70 0.19 0.10
Matches are distributed among these distances:
8 2 0.03
9 23 0.37
10 29 0.47
11 8 0.13
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.31
Consensus pattern (10 bp):
AAAAATATTT
Found at i:33330544 original size:20 final size:20
Alignment explanation
Indices: 33330482--33330663 Score: 82
Period size: 20 Copynumber: 9.6 Consensus size: 20
33330472 AAAAATATTT
*
33330482 AAAAATATATAAGAATTGTAA
1 AAAAATAT-TAAAAATTGTAA
* * *
33330503 AAACAT-TT--AAATTAT-T
1 AAAAATATTAAAAATTGTAA
33330519 AAAAATATTAAAAATTGT-A
1 AAAAATATTAAAAATTGTAA
33330538 AAAAA-A-TAAAAATTGT--
1 AAAAATATTAAAAATTGTAA
*
33330554 AAAAA-ATTAAATATTGTAA
1 AAAAATATTAAAAATTGTAA
* * * *
33330573 ATAACTATTAAATATTGT-T
1 AAAAATATTAAAAATTGTAA
*
33330592 AAAAATATTTTAAAATTGTAA
1 AAAAATA-TTAAAAATTGTAA
* ** *
33330613 CAAGTTATTATAAAATTATAA
1 AAAAATATTA-AAAATTGTAA
* * * *
33330634 AACATTATTTAAAATT-TAT
1 AAAAATATTAAAAATTGTAA
*
33330653 TAAAATATTAA
1 AAAAATATTAA
33330664 TTTTTTTGAA
Statistics
Matches: 121, Mismatches: 30, Indels: 22
0.70 0.17 0.13
Matches are distributed among these distances:
16 11 0.09
17 26 0.21
18 1 0.01
19 29 0.24
20 30 0.25
21 24 0.20
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (20 bp):
AAAAATATTAAAAATTGTAA
Found at i:33330722 original size:23 final size:21
Alignment explanation
Indices: 33330691--33330747 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 21
33330681 AAAAATTTGC
*
33330691 TAATAATTATTAAAAAGTGTAAA
1 TAATAATTA--AAAAAATGTAAA
*
33330714 TAATCATTAAAAAAATGTAAA
1 TAATAATTAAAAAAATGTAAA
33330735 -AA-AATGTAAAAAA
1 TAATAAT-TAAAAAA
33330748 GAATTCTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 2 0.07
20 9 0.30
21 11 0.37
23 8 0.27
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (21 bp):
TAATAATTAAAAAAATGTAAA
Found at i:33330726 original size:21 final size:20
Alignment explanation
Indices: 33330692--33330734 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
33330682 AAAATTTGCT
* *
33330692 AATAATTATTAAAAAGTGTA
1 AATAATCATTAAAAAATGTA
33330712 AATAATCATTAAAAAAATGTA
1 AATAATCATT-AAAAAATGTA
33330733 AA
1 AA
33330735 AAAATGTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.30
Consensus pattern (20 bp):
AATAATCATTAAAAAATGTA
Found at i:33330737 original size:9 final size:10
Alignment explanation
Indices: 33330721--33330747 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
33330711 AAATAATCAT
33330721 TAAAAAAATG
1 TAAAAAAATG
33330731 TAAAAAAATG
1 TAAAAAAATG
33330741 TAAAAAA
1 TAAAAAA
33330748 GAATTCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (10 bp):
TAAAAAAATG
Found at i:33330931 original size:3 final size:3
Alignment explanation
Indices: 33330925--33330956 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
33330915 AAGAAGAAGA
*
33330925 AGG AGG AGG AGG AGG AGG AGG AGG CGG AGG AG
1 AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AG
33330957 AATTTGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.31, C:0.03, G:0.66, T:0.00
Consensus pattern (3 bp):
AGG
Found at i:33331105 original size:13 final size:13
Alignment explanation
Indices: 33331087--33331111 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33331077 TAACAATATT
33331087 TAATAATTATTTA
1 TAATAATTATTTA
33331100 TAATAATTATTT
1 TAATAATTATTT
33331112 TTTTACAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TAATAATTATTTA
Found at i:33331820 original size:16 final size:17
Alignment explanation
Indices: 33331799--33331831 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
33331789 TATAAAATAT
33331799 AATAAA-ATATTAAAAA
1 AATAAATATATTAAAAA
*
33331815 AATAAATATTTTAAAAA
1 AATAAATATATTAAAAA
33331832 GAAAAATACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AATAAATATATTAAAAA
Found at i:33332430 original size:79 final size:80
Alignment explanation
Indices: 33332305--33332523 Score: 234
Period size: 79 Copynumber: 2.7 Consensus size: 80
33332295 TACAAAAGTG
* * * *
33332305 CACAAATTTATTTAGATAAATATAAACTTTAAAATTAACAATTCAAATATGATAGCATACTCACA
1 CACAAATTTATTCAAATAAACATAAACTTT-AAATTAACCATTCAAATATGATAGCATACTCACA
33332370 GCAAAACTTGC-ACA-
65 GCAAAACTTGCAACAC
* * * * * *
33332384 CACAAATTTATTCAAATAAACATAGACTTTAAACTTAACCATTCAAATTTGATAGTATATTCGCG
1 CACAAATTTATTCAAATAAACATAAACTTTAAA-TTAACCATTCAAATATGATAGCATACTCACA
33332449 GCAAAACTTGCAGTAAACAC
65 GCAAAACTTGC----AACAC
*
33332469 GCACAAATTTATTCAAATAAACATAAAC-TT-AA--AACCATTCAAATAGGATAGCATA
1 -CACAAATTTATTCAAATAAACATAAACTTTAAATTAACCATTCAAATATGATAGCATA
33332524 TCCCAACAAA
Statistics
Matches: 118, Mismatches: 14, Indels: 14
0.81 0.10 0.10
Matches are distributed among these distances:
78 3 0.03
79 62 0.53
81 20 0.17
84 5 0.04
85 2 0.02
86 26 0.22
ACGTcount: A:0.47, C:0.17, G:0.08, T:0.28
Consensus pattern (80 bp):
CACAAATTTATTCAAATAAACATAAACTTTAAATTAACCATTCAAATATGATAGCATACTCACAG
CAAAACTTGCAACAC
Found at i:33333872 original size:17 final size:17
Alignment explanation
Indices: 33333850--33333889 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
33333840 TTTTCTTATT
*
33333850 TAAAATTTTA-AAAATAA
1 TAAAATTGTATAAAA-AA
33333867 TAAAATTGTATAAAAAA
1 TAAAATTGTATAAAAAA
33333884 TAAAAT
1 TAAAAT
33333890 CAATATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 17 0.81
18 4 0.19
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (17 bp):
TAAAATTGTATAAAAAA
Found at i:33334797 original size:62 final size:61
Alignment explanation
Indices: 33334700--33334823 Score: 194
Period size: 62 Copynumber: 2.0 Consensus size: 61
33334690 AAGAAAAAAG
* * *
33334700 AGTTAACATTGTTAATGAAACATAACTCAGTTGATAAATTTACCAAAAACAAATCAAATTGA
1 AGTTAAAATTGTCAATAAAACATAACTCAGTTGATAAATTTACCAAAAA-AAATCAAATTGA
* *
33334762 AGTTAAAATTGTCAATAAAACATAATTCAGTTGATAAATTTACCAAAAAAAATCTAATTGA
1 AGTTAAAATTGTCAATAAAACATAACTCAGTTGATAAATTTACCAAAAAAAATCAAATTGA
33334823 A
1 A
33334824 TTTATAGTGT
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
61 12 0.21
62 45 0.79
ACGTcount: A:0.50, C:0.11, G:0.09, T:0.30
Consensus pattern (61 bp):
AGTTAAAATTGTCAATAAAACATAACTCAGTTGATAAATTTACCAAAAAAAATCAAATTGA
Found at i:33334809 original size:28 final size:27
Alignment explanation
Indices: 33334717--33334809 Score: 62
Period size: 28 Copynumber: 3.1 Consensus size: 27
33334707 ATTGTTAATG
33334717 AAACATAACTCAGTTGATAAATTTACCAA
1 AAACATAA-TCAGTTGATAAATTTACC-A
* **
33334746 AAACA-AATCAAATTGAAGTTAAAATTGTCAATA
1 AAACATAATC-AGTTG-A--T-AAATT-T-ACCA
33334779 AAACATAATTCAGTTGATAAATTTACCA
1 AAACATAA-TCAGTTGATAAATTTACCA
33334807 AAA
1 AAA
33334810 AAAATCTAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 19
0.66 0.08 0.26
Matches are distributed among these distances:
27 2 0.04
28 11 0.22
29 7 0.14
30 5 0.10
31 2 0.04
32 5 0.10
33 8 0.16
34 7 0.14
35 2 0.04
ACGTcount: A:0.52, C:0.13, G:0.08, T:0.28
Consensus pattern (27 bp):
AAACATAATCAGTTGATAAATTTACCA
Found at i:33335117 original size:21 final size:21
Alignment explanation
Indices: 33335070--33335117 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
33335060 CCAAAATCTC
* **
33335070 GTTCTTTGGTAATACAATCTT
1 GTTCTTTGGTAATACAACCAA
* *
33335091 GGTCTTTGGTAATATAACCAA
1 GTTCTTTGGTAATACAACCAA
33335112 GTTCTT
1 GTTCTT
33335118 GATTATTTGA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.44
Consensus pattern (21 bp):
GTTCTTTGGTAATACAACCAA
Found at i:33345773 original size:42 final size:37
Alignment explanation
Indices: 33345688--33345765 Score: 129
Period size: 37 Copynumber: 2.1 Consensus size: 37
33345678 ACATAATATC
* *
33345688 ATTAACAACATTAATAATCTAATGCTATGGAAATTAA
1 ATTAACAAAATTAATAATCTAATGCTATAGAAATTAA
*
33345725 ATTAACAAAATTAATAATCTAATTCTATAGAAATTAA
1 ATTAACAAAATTAATAATCTAATGCTATAGAAATTAA
33345762 ATTA
1 ATTA
33345766 TTCTAACACC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.51, C:0.09, G:0.05, T:0.35
Consensus pattern (37 bp):
ATTAACAAAATTAATAATCTAATGCTATAGAAATTAA
Found at i:33348242 original size:35 final size:35
Alignment explanation
Indices: 33348195--33348264 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
33348185 ACATCTGATT
33348195 AGGGAAAAAAAACCGTAAATGATCTTTCCTATTGG
1 AGGGAAAAAAAACCGTAAATGATCTTTCCTATTGG
*
33348230 AGGGAAAGAAAACCGTAAATGATCTTTCCTATTGG
1 AGGGAAAAAAAACCGTAAATGATCTTTCCTATTGG
33348265 CCTCATTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (35 bp):
AGGGAAAAAAAACCGTAAATGATCTTTCCTATTGG
Found at i:33352009 original size:21 final size:18
Alignment explanation
Indices: 33351965--33352009 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
33351955 CCAAATTTCT
33351965 TTAAATTTAGCAAAAATA
1 TTAAATTTAGCAAAAATA
33351983 TGTAAATTTAGCATATAAATAA
1 T-TAAATTTAGCA-A-AAAT-A
33352005 TTAAA
1 TTAAA
33352010 AATTGAGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 1 0.04
19 11 0.48
20 1 0.04
21 8 0.35
22 2 0.09
ACGTcount: A:0.53, C:0.04, G:0.07, T:0.36
Consensus pattern (18 bp):
TTAAATTTAGCAAAAATA
Found at i:33353618 original size:63 final size:63
Alignment explanation
Indices: 33353503--33353637 Score: 157
Period size: 63 Copynumber: 2.2 Consensus size: 63
33353493 TGTGGTAGCC
* * * * *
33353503 CATGTGTCC-GGCCGTGTAACTCACTGTTTTTAAATTAGAGCCACACGTGCTAG-GAACACGAG
1 CATGTGTCCAGGCCATGTAACTAACTGTTTGTAAATTAGAACCACACGGGCTAGAG-ACACGAG
* * * *
33353565 CATGTGTCCAGGCCATGTAACTAACTGTTTGTGAATTAGAATCACATGGGCTAGAGACACGGG
1 CATGTGTCCAGGCCATGTAACTAACTGTTTGTAAATTAGAACCACACGGGCTAGAGACACGAG
*
33353628 CGTGTGTCCA
1 CATGTGTCCA
33353638 AGCTGTGTGA
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
62 9 0.15
63 51 0.84
64 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (63 bp):
CATGTGTCCAGGCCATGTAACTAACTGTTTGTAAATTAGAACCACACGGGCTAGAGACACGAG
Found at i:33356784 original size:40 final size:40
Alignment explanation
Indices: 33356593--33356777 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
33356583 TTGAATGATG
* * * *
33356593 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
33356633 TCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33356673 TCCGGGCTAAG-CCCGAAGGGATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
33356712 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
33356753 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33356778 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 33 0.27
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33356799 original size:79 final size:79
Alignment explanation
Indices: 33356649--33356810 Score: 186
Period size: 79 Copynumber: 2.1 Consensus size: 79
33356639 CTAAGATCCA
* * * **
33356649 AAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGGATTTGTGCGAGTTACTAAATC
1 AAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATC
*
33356714 CGGGTTAAGTCCCG
66 CGGGTTAAATCCCG
* * *
33356728 AAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTAT
1 AAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTAA
*
33356791 ATCC-GGTTAAATTCCG
63 ATCCGGGTTAAATCCCG
33356807 AAGG
1 AAGG
33356811 TATGTGATTT
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 44 0.63
80 24 0.34
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
AAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATC
CGGGTTAAATCCCG
Found at i:33367252 original size:10 final size:10
Alignment explanation
Indices: 33367220--33367257 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
33367210 TCTAGAATTT
33367220 AACA-TCAAG
1 AACATTCAAG
*
33367229 AACATTTTAAG
1 AACA-TTCAAG
33367240 AACATTCAAG
1 AACATTCAAG
33367250 AACATTCA
1 AACATTCA
33367258 TGGAAAGTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 4 0.16
10 13 0.52
11 8 0.32
ACGTcount: A:0.50, C:0.18, G:0.08, T:0.24
Consensus pattern (10 bp):
AACATTCAAG
Found at i:33369764 original size:45 final size:45
Alignment explanation
Indices: 33369713--33369813 Score: 148
Period size: 45 Copynumber: 2.2 Consensus size: 45
33369703 ACGGTAGCAA
** **
33369713 TAACAGTAACAATAACAGTATTCAACACACAAAGTGTTGAATTTG
1 TAACAGTAACAATAACAGTATTCAACACACAAAGTGTCAAATCGG
**
33369758 TAACAGTAACGGTAACAGTATTCAACACACAAAGTGTCAAATCGG
1 TAACAGTAACAATAACAGTATTCAACACACAAAGTGTCAAATCGG
33369803 TAACAGTAACA
1 TAACAGTAACA
33369814 GTAGTCGGCA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.45, C:0.18, G:0.15, T:0.23
Consensus pattern (45 bp):
TAACAGTAACAATAACAGTATTCAACACACAAAGTGTCAAATCGG
Found at i:33373583 original size:14 final size:14
Alignment explanation
Indices: 33373541--33373585 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
33373531 TTAAAGAAGC
33373541 AACTCATTAAATTA
1 AACTCATTAAATTA
* *
33373555 AATTCATCAAA-TA
1 AACTCATTAAATTA
*
33373568 AACTCATTTAATTA
1 AACTCATTAAATTA
33373582 AACT
1 AACT
33373586 AAGATGAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:33375120 original size:22 final size:22
Alignment explanation
Indices: 33375069--33375134 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 22
33375059 GGTATTTGGG
* *
33375069 AATTGGTTCGAAATAGTATGG-
1 AATTGGTACGAAATGGTATGGT
33375090 AATTGGTACGAAATGGTATGGT
1 AATTGGTACGAAATGGTATGGT
* *
33375112 ATTTGGTACGAATTGGTAATGGT
1 AATTGGTACGAAATGGT-ATGGT
33375135 TCAAAAGGAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 19 0.49
22 15 0.38
23 5 0.13
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (22 bp):
AATTGGTACGAAATGGTATGGT
Found at i:33376144 original size:153 final size:154
Alignment explanation
Indices: 33375866--33376173 Score: 591
Period size: 153 Copynumber: 2.0 Consensus size: 154
33375856 GTACCCTCTT
33375866 TTAATACCTTACATGCTCCAAAAACGTTCATGGATGATGTACCTGCAGCAACATTCATCAAATAA
1 TTAATACCTTACATGCTCCAAAAACGTTCATGGATGATGTACCTGCAGCAACATTCATCAAATAA
33375931 TTCAAATTCATGTTTAGACACATTAAATTAACACTAAAATGCTGCACATTAAATTCGGCAGCCTT
66 TTCAAATTCATGTTTAGACACATTAAATTAACACTAAAATGCTGCACATTAAATTCGGCAGCCTT
33375996 AGGAC-ATAATTAAAACAAGTAAC
131 AGGACAATAATTAAAACAAGTAAC
33376019 TTAATACCTTACATGCTCCAAAAACGTTCATGGATGATGTACCTGCAGCAACATTCATCAAATAA
1 TTAATACCTTACATGCTCCAAAAACGTTCATGGATGATGTACCTGCAGCAACATTCATCAAATAA
*
33376084 TTCAAATTCATGTTTAGACACATTAAATTAACACTAAAATGCTGCACATTAAATTTGGCAGCCTT
66 TTCAAATTCATGTTTAGACACATTAAATTAACACTAAAATGCTGCACATTAAATTCGGCAGCCTT
33376149 AGGACATATAATTAAAACAAGTAAC
131 AGGACA-ATAATTAAAACAAGTAAC
33376174 AAAGTTAACA
Statistics
Matches: 152, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
153 134 0.88
155 18 0.12
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.29
Consensus pattern (154 bp):
TTAATACCTTACATGCTCCAAAAACGTTCATGGATGATGTACCTGCAGCAACATTCATCAAATAA
TTCAAATTCATGTTTAGACACATTAAATTAACACTAAAATGCTGCACATTAAATTCGGCAGCCTT
AGGACAATAATTAAAACAAGTAAC
Found at i:33380595 original size:16 final size:16
Alignment explanation
Indices: 33380574--33380608 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
33380564 TTCAAATAGG
33380574 TGCCTCGATCAACATC
1 TGCCTCGATCAACATC
33380590 TGCCTCGATCAACATC
1 TGCCTCGATCAACATC
33380606 TGC
1 TGC
33380609 TTCAATGTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.23, C:0.37, G:0.14, T:0.26
Consensus pattern (16 bp):
TGCCTCGATCAACATC
Found at i:33384354 original size:51 final size:51
Alignment explanation
Indices: 33384246--33384364 Score: 150
Period size: 51 Copynumber: 2.3 Consensus size: 51
33384236 TAATCAGTAA
* * * *
33384246 CGGTAGCAATAACAGTAACAGTAACGGTATTCAACACACTAAGTGCAAAAT
1 CGGTAACAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCAAAAT
** * *
33384297 TTGTAACAGTAACGGTAACAGTAACAGTATTCAACACACAAAGTGTC-GAAT
1 CGGTAACAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTG-CAAAAT
33384348 CGGTAACAGTAACAGTA
1 CGGTAACAGTAACAGTA
33384365 GTCGGCATAT
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
51 55 0.98
52 1 0.02
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.21
Consensus pattern (51 bp):
CGGTAACAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCAAAAT
Found at i:33393412 original size:61 final size:58
Alignment explanation
Indices: 33393340--33393456 Score: 162
Period size: 61 Copynumber: 2.0 Consensus size: 58
33393330 AGTGATTATC
* *
33393340 TTAATATTAAATTAAATTTAATATTTATCTTGTAGATAAATATTCTATTAATTTAATATAT
1 TTAATATTAAATTAAATCTAATATTTATC-T-T-GATAAATATTATATTAATTTAATATAT
* * *
33393401 TTAATGTTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAATTTAATAT
1 TTAATATTAAATTAAATCTAATATTTATCTTGATAAATATTATATTAATTTAATAT
33393457 TAAAGTGATT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
58 23 0.45
59 1 0.02
60 1 0.02
61 26 0.51
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.51
Consensus pattern (58 bp):
TTAATATTAAATTAAATCTAATATTTATCTTGATAAATATTATATTAATTTAATATAT
Found at i:33393474 original size:58 final size:62
Alignment explanation
Indices: 33393358--33393481 Score: 152
Period size: 58 Copynumber: 2.1 Consensus size: 62
33393348 AAATTAAATT
* *
33393358 TAATATTTATCTTGTAGATAAATATTCTATTAATTTAATATATTTAATGTTAAATTTAATC-
1 TAATATTTATCTTGTAGATAAATATTATATTAATTTAATATATTAAATGTTAAATTTAATCA
* *
33393419 TAATATTTATC-T-T-GATAAGTATTATATTAATTT-A-ATATTAAAGTGATTAAGTTTAATCA
1 TAATATTTATCTTGTAGATAAATATTATATTAATTTAATATATTAAA-TG-TTAAATTTAATCA
33393478 TAAT
1 TAAT
33393482 TGAACTCTCT
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
56 7 0.12
57 3 0.05
58 29 0.52
59 5 0.09
60 1 0.02
61 11 0.20
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.49
Consensus pattern (62 bp):
TAATATTTATCTTGTAGATAAATATTATATTAATTTAATATATTAAATGTTAAATTTAATCA
Found at i:33395621 original size:12 final size:12
Alignment explanation
Indices: 33395604--33395629 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
33395594 TATTTTGTTA
33395604 TATTTTTAATGT
1 TATTTTTAATGT
33395616 TATTTTTAATGT
1 TATTTTTAATGT
33395628 TA
1 TA
33395630 AATAATAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (12 bp):
TATTTTTAATGT
Found at i:33398980 original size:23 final size:25
Alignment explanation
Indices: 33398944--33398989 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
33398934 TCATGTGAAA
*
33398944 ATATACTCATTCAGATT-TAATTTC
1 ATATACTCACTCAGATTCTAATTTC
*
33398968 ATAT-CTCACTCAGCTTCTAATT
1 ATATACTCACTCAGATTCTAATT
33398990 CTATTTCCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.30, C:0.22, G:0.04, T:0.43
Consensus pattern (25 bp):
ATATACTCACTCAGATTCTAATTTC
Found at i:33399980 original size:46 final size:46
Alignment explanation
Indices: 33399913--33400098 Score: 300
Period size: 46 Copynumber: 4.0 Consensus size: 46
33399903 ACAATGCTAT
* * * *
33399913 AACTCAATATGGTTTTCTTCATTAAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
* *
33399959 AACTCAGTATGGTTTTCTTCATTGAAACATCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
33400005 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
* *
33400051 AACTCAGTATGGCTTTCTTCCCTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
33400097 AA
1 AA
33400099 TTTTTCATGA
Statistics
Matches: 132, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 132 1.00
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.36
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
Found at i:33401314 original size:17 final size:17
Alignment explanation
Indices: 33401292--33401338 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
33401282 AATTCTTTTT
33401292 AAATCACAAAATTCACA
1 AAATCACAAAATTCACA
* *
33401309 AAATCACAGAATTCACT
1 AAATCACAAAATTCACA
*
33401326 AATTCA-AAAATTC
1 AAATCACAAAATTC
33401339 TTATAAATTC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
16 6 0.23
17 20 0.77
ACGTcount: A:0.53, C:0.21, G:0.02, T:0.23
Consensus pattern (17 bp):
AAATCACAAAATTCACA
Found at i:33407301 original size:39 final size:42
Alignment explanation
Indices: 33407253--33407393 Score: 144
Period size: 47 Copynumber: 3.2 Consensus size: 42
33407243 ATGAGTATTC
* *
33407253 GAATATGAAATG-ATA-G-TAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAATGTATATGATAAGGCCTAATAGCCGATGTGAT
33407292 GAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAA-TGTATA----TGATAAGGCCTAATAGCCGATGTGAT
33407339 GAATGTGAAAATGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTG-AAATG--TATA--TGATAAGGCCTAATAGCCGATGTGAT
*
33407386 GAGTGTGA
1 GAATGTGA
33407394 GAGGTGATGT
Statistics
Matches: 88, Mismatches: 3, Indels: 15
0.83 0.03 0.14
Matches are distributed among these distances:
39 9 0.10
40 2 0.02
41 3 0.03
46 2 0.02
47 65 0.74
48 3 0.03
49 4 0.05
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (42 bp):
GAATGTGAAATGTATATGATAAGGCCTAATAGCCGATGTGAT
Found at i:33407332 original size:47 final size:47
Alignment explanation
Indices: 33407269--33407393 Score: 214
Period size: 47 Copynumber: 2.7 Consensus size: 47
33407259 GAAATGATAG
* * *
33407269 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAATGTATATATGTGA
33407316 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAATGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAATGTATATATGTGA
*
33407363 TAAGGCCTAATAGCCGATGTGATGAGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGA
33407394 GAGGTGATGT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAATGTATATATGTGA
Found at i:33413191 original size:17 final size:17
Alignment explanation
Indices: 33413143--33413198 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
33413133 TCGCAATAGG
33413143 CATTAAGAAAACATAAA
1 CATTAAGAAAACATAAA
*** *
33413160 -GGGAA-AAAGCATAAA
1 CATTAAGAAAACATAAA
33413175 CATTAAGAAAACATAAA
1 CATTAAGAAAACATAAA
*
33413192 CACTAAG
1 CATTAAG
33413199 CCCTAGAAAA
Statistics
Matches: 28, Mismatches: 9, Indels: 4
0.68 0.22 0.10
Matches are distributed among these distances:
15 9 0.32
16 4 0.14
17 15 0.54
ACGTcount: A:0.61, C:0.12, G:0.12, T:0.14
Consensus pattern (17 bp):
CATTAAGAAAACATAAA
Found at i:33417226 original size:56 final size:56
Alignment explanation
Indices: 33417140--33417259 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
33417130 ACAAGGGATG
33417140 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
33417196 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
33417252 ATGAGCAA
1 ATGGGCAA
33417260 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:33421150 original size:40 final size:40
Alignment explanation
Indices: 33421106--33422143 Score: 1842
Period size: 40 Copynumber: 25.9 Consensus size: 40
33421096 TAAGTGACCA
** *
33421106 TATCCGGACTAAGTTCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421146 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421186 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421226 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421266 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421306 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421346 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421386 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421426 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421466 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421506 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421546 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421586 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421626 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421666 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421706 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421746 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421786 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421826 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421866 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
33421906 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
* *
33421946 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
* *
33421986 TATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
* * * *
33422026 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATA
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
* * * ** * * * * *
33422066 TATCTGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
* * * * *
33422106 TATCCGGGCTAGGTTCCGAAGAGCAATCATGCTGGTGA
1 TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGA
33422144 CGTGTATTCG
Statistics
Matches: 971, Mismatches: 27, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 971 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATG
Found at i:33424796 original size:5 final size:5
Alignment explanation
Indices: 33424786--33424815 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
33424776 TTAATTATCT
33424786 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
33424816 AATTGAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:33428145 original size:17 final size:17
Alignment explanation
Indices: 33428123--33428156 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
33428113 ATACGCCACT
*
33428123 AAGTGTTCTGACGACTC
1 AAGTGTTCTGACAACTC
33428140 AAGTGTTCTGACAACTC
1 AAGTGTTCTGACAACTC
33428157 CATCGAACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (17 bp):
AAGTGTTCTGACAACTC
Found at i:33429991 original size:27 final size:27
Alignment explanation
Indices: 33429960--33430137 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33429950 TGAATTGTAC
33429960 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33429987 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33430013 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33430041 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33430069 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33430096 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33430123 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33430138 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33430074 original size:82 final size:81
Alignment explanation
Indices: 33429961--33430116 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33429951 GAATTGTACA
* *
33429961 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33430025 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33430042 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33430107 TGCGAGTTGA
65 TGCGAATTGA
33430117 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33430128 original size:82 final size:81
Alignment explanation
Indices: 33429957--33430137 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33429947 GATTGAATTG
* *
33429957 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33430022 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33430038 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33430102 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33430120 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33430138 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33433011 original size:21 final size:21
Alignment explanation
Indices: 33432985--33433028 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
33432975 CAGATGCGAC
*
33432985 GGGTGTTGAGTTTCTGAGATT
1 GGGTGTTGAGTTTCTAAGATT
33433006 GGGTGTTGAGTTTCTAAGATT
1 GGGTGTTGAGTTTCTAAGATT
33433027 GG
1 GG
33433029 TTGTAATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.16, C:0.05, G:0.39, T:0.41
Consensus pattern (21 bp):
GGGTGTTGAGTTTCTAAGATT
Found at i:33448341 original size:19 final size:19
Alignment explanation
Indices: 33448317--33448354 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
33448307 GAAAAATATC
*
33448317 TTTAATAATTTTTATACTT
1 TTTAATAACTTTTATACTT
33448336 TTTAATAACTTTTATACTT
1 TTTAATAACTTTTATACTT
33448355 ATTTGAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTAATAACTTTTATACTT
Found at i:33450569 original size:21 final size:22
Alignment explanation
Indices: 33450534--33450585 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
33450524 TGCTATTTTT
33450534 ATATATAATGT-AATTTATAACA
1 ATATATAAT-TAAATTTATAACA
*
33450556 ATA-ATAATTAAATTTATAGCA
1 ATATATAATTAAATTTATAACA
33450577 ATATATAAT
1 ATATATAAT
33450586 AATATAATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 1 0.04
21 18 0.67
22 8 0.30
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (22 bp):
ATATATAATTAAATTTATAACA
Found at i:33454560 original size:18 final size:18
Alignment explanation
Indices: 33454537--33454578 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
33454527 GCCAAGTGCA
*
33454537 TATCCTAACCCTTATATT
1 TATCCTAACCCTTATATG
33454555 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
33454573 TATCCT
1 TATCCT
33454579 TTTTCACTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.26, C:0.29, G:0.02, T:0.43
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:33455022 original size:59 final size:58
Alignment explanation
Indices: 33454924--33455102 Score: 234
Period size: 59 Copynumber: 3.1 Consensus size: 58
33454914 ATTGATTTAT
* * *
33454924 TTTTGAATATTTTTGTTTAAATTATTTTTATATTGTTTCATTTAATAAAATATAAGTTC
1 TTTTGAATATTTTTG-TAAAATTATTTTTATATTATTTCATTTAATAAAATAGAAGTTC
*
33454983 TTTTCAATATTTTTGTAAAATTTATTTTTATATTATTTCATTTAATAAAATAGAAGTTC
1 TTTTGAATATTTTTGTAAAA-TTATTTTTATATTATTTCATTTAATAAAATAGAAGTTC
** ** * *
33455042 TTTTGAATATTTTTGTACAAACCA-AATAATATTATTTCATTTAATAAATTAGAAGTTC
1 TTTTGAATATTTTTGTA-AAATTATTTTTATATTATTTCATTTAATAAAATAGAAGTTC
33455100 TTT
1 TTT
33455103 CGATGTGGAC
Statistics
Matches: 107, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
58 37 0.35
59 67 0.63
60 3 0.03
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (58 bp):
TTTTGAATATTTTTGTAAAATTATTTTTATATTATTTCATTTAATAAAATAGAAGTTC
Found at i:33456186 original size:15 final size:15
Alignment explanation
Indices: 33456166--33456217 Score: 104
Period size: 15 Copynumber: 3.5 Consensus size: 15
33456156 CCTCGATCTA
33456166 AAATAATGCAACATT
1 AAATAATGCAACATT
33456181 AAATAATGCAACATT
1 AAATAATGCAACATT
33456196 AAATAATGCAACATT
1 AAATAATGCAACATT
33456211 AAATAAT
1 AAATAAT
33456218 AACCGTAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.56, C:0.12, G:0.06, T:0.27
Consensus pattern (15 bp):
AAATAATGCAACATT
Found at i:33458015 original size:29 final size:29
Alignment explanation
Indices: 33457973--33458054 Score: 92
Period size: 29 Copynumber: 2.8 Consensus size: 29
33457963 AAATCCATAT
*
33457973 CGTCAAAATAATTTTTTCAGAACACATCA
1 CGTCAAAATTATTTTTTCAGAACACATCA
* * * *
33458002 CGTCAAATTTATTTTTTCAAAACCCATCT
1 CGTCAAAATTATTTTTTCAGAACACATCA
* * *
33458031 TGTTAAAATTATTTTTCCAGAACA
1 CGTCAAAATTATTTTTTCAGAACA
33458055 ATAATTAGCA
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.37, C:0.20, G:0.06, T:0.38
Consensus pattern (29 bp):
CGTCAAAATTATTTTTTCAGAACACATCA
Found at i:33459719 original size:42 final size:43
Alignment explanation
Indices: 33459625--33459719 Score: 104
Period size: 43 Copynumber: 2.2 Consensus size: 43
33459615 ACCATGTACA
* * *
33459625 ATTTGAAATAGGGTCACACGGTCGTGTCGCTAGACCGTGTGTG
1 ATTTGAAATAAGGTCACACGGTCATGTCGCTAGACCGTGTGCG
** * *
33459668 ATTCAAAATAAGGTCACACGG-CTATGTGGCT-GACCGTTTGCG
1 ATTTGAAATAAGGTCACACGGTC-ATGTCGCTAGACCGTGTGCG
33459710 ATTTGAAATA
1 ATTTGAAATA
33459720 GTGTAACACC
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
42 18 0.43
43 24 0.57
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (43 bp):
ATTTGAAATAAGGTCACACGGTCATGTCGCTAGACCGTGTGCG
Found at i:33459976 original size:18 final size:18
Alignment explanation
Indices: 33459929--33459977 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
33459919 ATCAGGGACT
33459929 ATTTTGAAACAAAATAAAA
1 ATTTTGAAA-AAAATAAAA
**
33459948 AGTTTTAGAAAAATCTAAAA
1 A-TTTT-GAAAAAAATAAAA
33459968 ATTTTGAAAA
1 ATTTTGAAAA
33459978 TAGGGGTCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 5 0.19
19 5 0.19
20 12 0.46
21 4 0.15
ACGTcount: A:0.57, C:0.04, G:0.08, T:0.31
Consensus pattern (18 bp):
ATTTTGAAAAAAATAAAA
Found at i:33462654 original size:24 final size:24
Alignment explanation
Indices: 33462630--33462676 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
33462620 AAACTACTTC
33462630 TAAAAAAAACTCAAGAGAGAATTCT
1 TAAAAAAAACTCAA-AGAGAATTCT
** *
33462655 TGTAGAAAACTCAAAGAGAATT
1 TAAAAAAAACTCAAAGAGAATT
33462677 TATCACTCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.53, C:0.11, G:0.15, T:0.21
Consensus pattern (24 bp):
TAAAAAAAACTCAAAGAGAATTCT
Found at i:33463439 original size:15 final size:15
Alignment explanation
Indices: 33463419--33463447 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
33463409 CAAAACATAT
33463419 TTATTTTCACAATTA
1 TTATTTTCACAATTA
33463434 TTATTTTCACAATT
1 TTATTTTCACAATT
33463448 GTACCCTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.55
Consensus pattern (15 bp):
TTATTTTCACAATTA
Found at i:33465293 original size:44 final size:44
Alignment explanation
Indices: 33465225--33465352 Score: 168
Period size: 44 Copynumber: 2.9 Consensus size: 44
33465215 AAGGATATTG
* *
33465225 TAGCGTCTTTCAGCCATGGTCTTACTCACTTTT-GTCATGATGCCA
1 TAGCGTCTTTCAG-CTTGGTCTTACTC-CTTTTAATCATGATGCCA
* * *
33465270 TAGCATCTTTCAGCTTGGTCTTACTCGTTTTAATCATGTTGCCA
1 TAGCGTCTTTCAGCTTGGTCTTACTCCTTTTAATCATGATGCCA
*
33465314 TAGCGTCTTTCAGCTATGGTCTTACTCGTTTTAATCATG
1 TAGCGTCTTTCAGCT-TGGTCTTACTCCTTTTAATCATG
33465353 TTTATGATAA
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
43 4 0.05
44 36 0.48
45 35 0.47
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.41
Consensus pattern (44 bp):
TAGCGTCTTTCAGCTTGGTCTTACTCCTTTTAATCATGATGCCA
Found at i:33465353 original size:45 final size:45
Alignment explanation
Indices: 33465225--33465354 Score: 192
Period size: 45 Copynumber: 2.9 Consensus size: 45
33465215 AAGGATATTG
* * * *
33465225 TAGCGTCTTTCAGCCATGGTCTTACTCACTTTT-GTCATGATGCCA
1 TAGCGTCTTTCAGCTATGGTCTTACTC-GTTTTAATCATGTTGCCA
*
33465270 TAGCATCTTTCAGCT-TGGTCTTACTCGTTTTAATCATGTTGCCA
1 TAGCGTCTTTCAGCTATGGTCTTACTCGTTTTAATCATGTTGCCA
33465314 TAGCGTCTTTCAGCTATGGTCTTACTCGTTTTAATCATGTT
1 TAGCGTCTTTCAGCTATGGTCTTACTCGTTTTAATCATGTT
33465355 TATGATAACA
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
43 4 0.05
44 35 0.45
45 38 0.49
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.42
Consensus pattern (45 bp):
TAGCGTCTTTCAGCTATGGTCTTACTCGTTTTAATCATGTTGCCA
Found at i:33468089 original size:27 final size:27
Alignment explanation
Indices: 33468058--33468235 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33468048 TAAATTGTAC
33468058 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33468085 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33468111 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33468139 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33468167 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33468194 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33468221 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33468236 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33468172 original size:82 final size:81
Alignment explanation
Indices: 33468059--33468214 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33468049 AAATTGTACA
* *
33468059 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33468123 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33468140 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33468205 TGCGAGTTGA
65 TGCGAATTGA
33468215 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33468226 original size:82 final size:81
Alignment explanation
Indices: 33468055--33468235 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33468045 GATTAAATTG
* *
33468055 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33468120 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33468136 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33468200 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33468218 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33468236 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33476064 original size:96 final size:96
Alignment explanation
Indices: 33475917--33476107 Score: 283
Period size: 96 Copynumber: 2.0 Consensus size: 96
33475907 CGAGATGATG
* * *
33475917 AGTATCCGCAACAAATGCCGAAACTTAGCCATCGGTAAGACATTTAGGACCAGCACCCGAAACAT
1 AGTATCCGCAACAAATGCCGAAACTTAGCCATCAGTAAGACATTCAAGACCAGCACCCGAAACAT
33475982 GGTAACCTGAGTCTGCTCACACAAGCTGACA
66 GGTAACCTGAGTCTGCTCACACAAGCTGACA
* * * * *
33476013 AGTATTCGTAACAAATGCTGAAACTTAGCCATTAGTAGGACATTCAAGACCAGCACCCGAAACAT
1 AGTATCCGCAACAAATGCCGAAACTTAGCCATCAGTAAGACATTCAAGACCAGCACCCGAAACAT
* * *
33476078 GGTAACCTGGGTTTGCTCACACAAGTTGAC
66 GGTAACCTGAGTCTGCTCACACAAGCTGAC
33476108 GGTCAAAATG
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 84 1.00
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (96 bp):
AGTATCCGCAACAAATGCCGAAACTTAGCCATCAGTAAGACATTCAAGACCAGCACCCGAAACAT
GGTAACCTGAGTCTGCTCACACAAGCTGACA
Found at i:33477734 original size:20 final size:20
Alignment explanation
Indices: 33477709--33477756 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
33477699 TGTGAAACTC
33477709 CCGTGTGCGATTACTTTAGG
1 CCGTGTGCGATTACTTTAGG
33477729 CCGTGTGCGATTACTTTAGG
1 CCGTGTGCGATTACTTTAGG
33477749 CCGTGTGC
1 CCGTGTGC
33477757 TATGCCCGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.12, C:0.23, G:0.31, T:0.33
Consensus pattern (20 bp):
CCGTGTGCGATTACTTTAGG
Found at i:33480905 original size:27 final size:27
Alignment explanation
Indices: 33480875--33481052 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33480865 ATATTGAGTC
* * * *
33480875 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
33480902 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
33480929 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
33480957 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
33480984 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
33481011 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
33481038 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33481053 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:33481014 original size:82 final size:81
Alignment explanation
Indices: 33480896--33481051 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33480886 TGCTATATAA
* *
33480896 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
33480961 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
33480978 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
33481042 CACTTAGTGC
65 CACTTAGTGC
33481052 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:33495902 original size:14 final size:14
Alignment explanation
Indices: 33495883--33495912 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
33495873 TCCCTAGATC
33495883 CTCTCTGACCACCA
1 CTCTCTGACCACCA
33495897 CTCTCTGACCACCA
1 CTCTCTGACCACCA
33495911 CT
1 CT
33495913 AGCATTGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.50, G:0.07, T:0.23
Consensus pattern (14 bp):
CTCTCTGACCACCA
Found at i:33510321 original size:29 final size:29
Alignment explanation
Indices: 33510288--33510344 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
33510278 GGAGAAGGAG
33510288 TTAGAAAAATAAAAGGGGAGATTCTTGTC
1 TTAGAAAAATAAAAGGGGAGATTCTTGTC
33510317 TTAGAAAAATAAAAGGGGAGATTCTTGT
1 TTAGAAAAATAAAAGGGGAGATTCTTGT
33510345 GTTTTTATTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.42, C:0.05, G:0.25, T:0.28
Consensus pattern (29 bp):
TTAGAAAAATAAAAGGGGAGATTCTTGTC
Found at i:33512562 original size:7 final size:7
Alignment explanation
Indices: 33512550--33512580 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
33512540 ACTTTTGTAA
33512550 TCATCCC
1 TCATCCC
33512557 TCATCCC
1 TCATCCC
*
33512564 TCATCCT
1 TCATCCC
33512571 TCATCCC
1 TCATCCC
33512578 TCA
1 TCA
33512581 ATCATCCCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.16, C:0.52, G:0.00, T:0.32
Consensus pattern (7 bp):
TCATCCC
Found at i:33519542 original size:79 final size:81
Alignment explanation
Indices: 33519406--33519590 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
33519396 TTGAATGATG
*
33519406 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
33519470 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
33519485 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
33519547 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
33519565 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33519591 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:33519604 original size:40 final size:40
Alignment explanation
Indices: 33519407--33519590 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
33519397 TGAATGATGT
* * * *
33519407 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
33519447 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
33519487 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33519525 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33519566 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
33519591 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:33519612 original size:79 final size:79
Alignment explanation
Indices: 33519459--33519623 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
33519449 GGACTAAGAT
* **
33519459 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
33519524 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
33519538 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
33519601 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
33519617 CCGAAGG
1 CCGAAGG
33519624 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Done.