Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 117 of 205
Found at i:35202071 original size:14 final size:14
Alignment explanation
Indices: 35202027--35202073 Score: 60
Period size: 14 Copynumber: 3.3 Consensus size: 14
35202017 AAATTCATTC
35202027 ATCAATTCATGTAA
1 ATCAATTCATGTAA
*
35202041 ATCATATATCAT-AAA
1 ATCA-AT-TCATGTAA
35202056 ATCAATTCATGTAA
1 ATCAATTCATGTAA
35202070 ATCA
1 ATCA
35202074 TGTATTTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
13 4 0.14
14 12 0.43
15 8 0.29
16 4 0.14
ACGTcount: A:0.47, C:0.15, G:0.04, T:0.34
Consensus pattern (14 bp):
ATCAATTCATGTAA
Found at i:35202201 original size:20 final size:19
Alignment explanation
Indices: 35202151--35202201 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
35202141 AATAACGGAA
*
35202151 AATTATCCATATCAATAGT
1 AATTATCCATACCAATAGT
*
35202170 AACTTATACATACCAATAGT
1 AA-TTATCCATACCAATAGT
35202190 AATTCATCCATA
1 AATT-ATCCATA
35202202 TAATTACATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.43, C:0.20, G:0.04, T:0.33
Consensus pattern (19 bp):
AATTATCCATACCAATAGT
Found at i:35202456 original size:23 final size:23
Alignment explanation
Indices: 35202378--35202458 Score: 76
Period size: 23 Copynumber: 3.5 Consensus size: 23
35202368 GCTAATGAAT
* *
35202378 GGTAAGCTC-TATCGAGCTAAAAC
1 GGTAAGCTCATA-AGAGCTGAAAC
* *
35202401 GGTAAGCTCCGT-AGAGCTGAAAT
1 GGTAAGCT-CATAAGAGCTGAAAC
* *
35202424 AGTAAACTCATAAGAGCTGAAAC
1 GGTAAGCTCATAAGAGCTGAAAC
35202447 GGTAAGCTCATA
1 GGTAAGCTCATA
35202459 CAAGCTGTGG
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
22 2 0.04
23 42 0.91
24 1 0.02
25 1 0.02
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (23 bp):
GGTAAGCTCATAAGAGCTGAAAC
Found at i:35202977 original size:125 final size:125
Alignment explanation
Indices: 35202755--35203092 Score: 516
Period size: 125 Copynumber: 2.7 Consensus size: 125
35202745 TAAGAGACGC
* *
35202755 CGTTTAACTTTGACTTGTAGTGGCACTAGCGGCGTTTATCTACAAACGCCAGTAAAGATCTAGCA
1 CGTTTAACTTTGACTTGTAGTGGCACTAGCGGCGTTTATCTAAAAACGCCGGTAAAGATCTAGCA
*
35202820 TTTGCGACGCTTATCAAAAAACGCCACTAATGCTCCGCAAATAATTAAGCAGAACGCCGT
66 TTTGCGACGCTTATCAAAAAACGCCACTAATGCTCCGCAAATAATTAAGCAGAACGCAGT
* ** * *
35202880 CGTTTAACTTTGACTTATAGTGGCACTAGCGGCGTTTATCTGGAAATGCCGGTAAAGATCTAGCT
1 CGTTTAACTTTGACTTGTAGTGGCACTAGCGGCGTTTATCTAAAAACGCCGGTAAAGATCTAGCA
*
35202945 TTTGC-AGCGCTTATCAAAAAATGCCACTAATGCTCCGCAAATAATTAAGCAGAACGCAGT
66 TTTGCGA-CGCTTATCAAAAAACGCCACTAATGCTCCGCAAATAATTAAGCAGAACGCAGT
* * *
35203005 CGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTATCTAAAAACGTCGGTAAAGATCTATCA
1 CGTTTAACTTTGACTTGTAGTGGCACTAGCGGCGTTTATCTAAAAACGCCGGTAAAGATCTAGCA
* * * *
35203070 TTTGTGGCTCTTATCCAAAAACG
66 TTTGCGACGCTTATCAAAAAACG
35203093 TTGCTAAAGA
Statistics
Matches: 190, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
124 1 0.01
125 189 0.99
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (125 bp):
CGTTTAACTTTGACTTGTAGTGGCACTAGCGGCGTTTATCTAAAAACGCCGGTAAAGATCTAGCA
TTTGCGACGCTTATCAAAAAACGCCACTAATGCTCCGCAAATAATTAAGCAGAACGCAGT
Found at i:35203145 original size:166 final size:163
Alignment explanation
Indices: 35202948--35203583 Score: 699
Period size: 166 Copynumber: 3.9 Consensus size: 163
35202938 TCTAGCTTTT
* *
35202948 GCAGCGCTTATCAAAAAATGCCACTAATGCTCCGCAAATAATTAAGCAGAACGCAGTCGTTTAAC
1 GCAGCGC-TAACAAAAAATGCCACTAATGCTCCGCAAATAATTAAGCAGAACGCCGTCGTTTAAC
* * **
35203013 TTTGACCTGTAGTGGCACTAGCGGCGTTTATCTAAAAACGTCGGTAAAGATCTATCATTTGTGGC
65 TTTGACCTGTAGTGACACTAGCGGCGTTTATCTAAAAAC--CGGTAAAGATCTAGCATTTGCAGC
* ** *
35203078 TCTTATCCAAAAACGTTGCTAAAGATCGGTATATTA
128 TCTTATCAAAAAACGCCGCTAAAGATCGGTACATTA
* * **
35203114 GCAGCGCTAACAGAAAAATGCCACTAATGCTCCGTAAATAATTGAGCAGAACATCGTCGTTTAAC
1 GCAGCGCTAACA-AAAAATGCCACTAATGCTCCGCAAATAATTAAGCAGAACGCCGTCGTTTAAC
*
35203179 TTTGACCTGTAGTGACACTAGCGGCGTTTATCTGAAAACATCGGTAAAGATCTAGCATTTGCAGC
65 TTTGACCTGTAGTGACACTAGCGGCGTTTATCT-AAAA-ACCGGTAAAGATCTAGCATTTGCAGC
* * * *
35203244 GCTTATCAAAAAATGCCGCTAGAGATTGGTACATTA
128 TCTTATCAAAAAACGCCGCTAAAGATCGGTACATTA
* * * *
35203280 GCGGCGCTAACAGAAAAATGCCACTAATGCTCCGCAAATAATTAAGCAGAACGCCATTGTTTAAA
1 GCAGCGCTAACA-AAAAATGCCACTAATGCTCCGCAAATAATTAAGCAGAACGCCGTCGTTTAAC
* * * * *
35203345 TTTGA----TA---ATATTAG-TG-G--TA-GTAAAACACCGATAAAGATCTAGCATTTGCAG-T
65 TTTGACCTGTAGTGACACTAGCGGCGTTTATCTAAAA-ACCGGTAAAGATCTAGCATTTGCAGCT
*
35203397 GCTTATCAAAAAATGCCGCTAAAGATCGGTACATTA
129 -CTTATCAAAAAACGCCGCTAAAGATCGGTACATTA
* * * * *
35203433 GCAGCGCTAGA-AAAAAATGCCACTATTGCTCCGCAAATAATTAAGTAGAATGTCGTCATTTAAC
1 GCAGCGCTA-ACAAAAAATGCCACTAATGCTCCGCAAATAATTAAGCAGAACGCCGTCGTTTAAC
* * * *
35203497 TTTGACCTGTAGTGACACTAGCGGCATTTATATGGAAATACCGGTAAAGATCTAGCATTTGCGGC
65 TTTGACCTGTAGTGACACTAGCGGCGTTTATCT--AAAAACCGGTAAAGATCTAGCATTTGCAGC
*
35203562 GT-TTATCAAAAAACGCCACTAA
128 -TCTTATCAAAAAACGCCGCTAA
35203584 TCCTCGATCT
Statistics
Matches: 394, Mismatches: 55, Indels: 43
0.80 0.11 0.09
Matches are distributed among these distances:
152 49 0.12
153 70 0.18
154 2 0.01
155 2 0.01
156 2 0.01
157 1 0.00
158 1 0.00
159 10 0.03
160 1 0.00
162 2 0.01
163 2 0.01
164 1 0.00
165 45 0.11
166 200 0.51
167 5 0.01
168 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (163 bp):
GCAGCGCTAACAAAAAATGCCACTAATGCTCCGCAAATAATTAAGCAGAACGCCGTCGTTTAACT
TTGACCTGTAGTGACACTAGCGGCGTTTATCTAAAAACCGGTAAAGATCTAGCATTTGCAGCTCT
TATCAAAAAACGCCGCTAAAGATCGGTACATTA
Found at i:35203738 original size:40 final size:39
Alignment explanation
Indices: 35203686--35203761 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 39
35203676 CTTTTTTGGA
* * *
35203686 AAACGCCGTAATTGCTCA-ACTATAGCGGCGTTTTTTTAC
1 AAACGCCGTAATTCCCCATA-TATAGCGGCATTTTTTTAC
35203725 AAACGCCGCTAATTCCCCATATATAGCGGCATTTTTT
1 AAACGCCG-TAATTCCCCATATATAGCGGCATTTTTT
35203762 GCCAAATGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 8 0.25
40 23 0.72
41 1 0.03
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (39 bp):
AAACGCCGTAATTCCCCATATATAGCGGCATTTTTTTAC
Found at i:35204222 original size:13 final size:13
Alignment explanation
Indices: 35204204--35204246 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
35204194 GTGTTTACGA
35204204 TTTATGGTGTAGG
1 TTTATGGTGTAGG
* *
35204217 TTTATGATTTAGTG
1 TTTATGGTGTAG-G
*
35204231 TTTATGGTGTACG
1 TTTATGGTGTAGG
35204244 TTT
1 TTT
35204247 TCAATTTACA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
13 14 0.58
14 10 0.42
ACGTcount: A:0.16, C:0.02, G:0.28, T:0.53
Consensus pattern (13 bp):
TTTATGGTGTAGG
Found at i:35204327 original size:22 final size:22
Alignment explanation
Indices: 35204268--35204327 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
35204258 GTTGAGTGTT
* *
35204268 TAGGGGTGAG-GGCTTAGGGTT
1 TAGGGGTTAGTGGCTTAGGGTC
*
35204289 TAGGGGTTA-TAGACTTAGGGTC
1 TAGGGGTTAGT-GGCTTAGGGTC
35204311 TAGGGGTTAGTGGCTTA
1 TAGGGGTTAGTGGCTTA
35204328 AGGTTACAGG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
21 8 0.25
22 23 0.72
23 1 0.03
ACGTcount: A:0.18, C:0.07, G:0.43, T:0.32
Consensus pattern (22 bp):
TAGGGGTTAGTGGCTTAGGGTC
Found at i:35204354 original size:7 final size:7
Alignment explanation
Indices: 35204325--35204376 Score: 52
Period size: 7 Copynumber: 7.1 Consensus size: 7
35204315 GGTTAGTGGC
35204325 TTAAGG-
1 TTAAGGT
35204331 TTACAGGT
1 TTA-AGGT
35204339 TTAAGGGT
1 TTAA-GGT
35204347 TTAAGGT
1 TTAAGGT
35204354 TTAAGGT
1 TTAAGGT
* *
35204361 ATAGAAGT
1 TTA-AGGT
35204369 TTAAGGT
1 TTAAGGT
35204376 T
1 T
35204377 ATGGGCTTAG
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
6 3 0.08
7 20 0.53
8 15 0.39
ACGTcount: A:0.31, C:0.02, G:0.29, T:0.38
Consensus pattern (7 bp):
TTAAGGT
Found at i:35208477 original size:21 final size:21
Alignment explanation
Indices: 35208451--35208500 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
35208441 CTACAACTTA
*
35208451 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCGGCAGCAAGGG
*
35208472 AAGCAGAGGCTGCAGCAAGGG
1 AAGCAGAGGCGGCAGCAAGGG
35208493 AAGCAGAG
1 AAGCAGAG
35208501 CAGAGCAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.34, C:0.18, G:0.46, T:0.02
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCAAGGG
Found at i:35208946 original size:43 final size:42
Alignment explanation
Indices: 35208855--35209090 Score: 265
Period size: 43 Copynumber: 5.4 Consensus size: 42
35208845 CATTTATAGA
* ** * * *
35208855 AAAAGCGCCGCTAAAAGTCACCAAACAATAGTGGCGTTTGTGG
1 AAAAGCGTCGCTAAAAGTCA-TGATCTATAGCGGCGTTTGTGG
* *
35208898 AAAAAGCGTCGCTAAAAGTCATGATCTATAGTGGCGTTTGTGAT
1 -AAAAGCGTCGCTAAAAGTCATGATCTATAGCGGCGTTTGTG-G
35208942 AAAAGCGTCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGG
1 AAAAGCGTCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGG
**
35208984 AAAAGCGTCGCTAAAGGTCATGAGTCATGATCTATAGCGATGTTTGTGG
1 AAAAGCGTCGCT-AA----A--AGTCATGATCTATAGCGGCGTTTGTGG
*
35209033 AAAAGCGTCGCTAAAGGTCATGATCTATAGCGGCGTTTGTGGG
1 AAAAGCGTCGCTAAAAGTCATGATCTATAGCGGCGTTTGT-GG
*
35209076 ATAAGCGTCGCTAAA
1 AAAAGCGTCGCTAAA
35209091 GAACATGACC
Statistics
Matches: 169, Mismatches: 14, Indels: 19
0.84 0.07 0.09
Matches are distributed among these distances:
42 34 0.20
43 75 0.44
44 20 0.12
47 1 0.01
48 2 0.01
49 37 0.22
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (42 bp):
AAAAGCGTCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGG
Found at i:35209029 original size:49 final size:49
Alignment explanation
Indices: 35208957--35209055 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 49
35208947 CGTCGCTAAA
*
35208957 AGTCATGATCTATAGCGGCGTTTGTGGAAAAGCGTCGCTAAAGGTCATG
1 AGTCATGATCTATAGCGACGTTTGTGGAAAAGCGTCGCTAAAGGTCATG
*
35209006 AGTCATGATCTATAGCGATGTTTGTGGAAAAGCGTCGCTAAAGGTCATG
1 AGTCATGATCTATAGCGACGTTTGTGGAAAAGCGTCGCTAAAGGTCATG
35209055 A
1 A
35209056 TCTATAGCGG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.27
Consensus pattern (49 bp):
AGTCATGATCTATAGCGACGTTTGTGGAAAAGCGTCGCTAAAGGTCATG
Found at i:35209055 original size:91 final size:93
Alignment explanation
Indices: 35208914--35209091 Score: 288
Period size: 92 Copynumber: 1.9 Consensus size: 93
35208904 CGTCGCTAAA
* * *
35208914 AGTCATGATCTATAGTGGCGTTTGTGATAAAAGCGTCGCTAAAAGTCATGATCTATAGCGGCGTT
1 AGTCATGATCTATAGCGACGTTTGTGAGAAAAGCGTCGCTAAAAGTCATGATCTATAGCGGCGTT
35208979 TGT-GGAAAAGCGTCGCTAAAGGTCATG
66 TGTGGGAAAAGCGTCGCTAAAGGTCATG
* *
35209006 AGTCATGATCTATAGCGATGTTTGTG-GAAAAGCGTCGCTAAAGGTCATGATCTATAGCGGCGTT
1 AGTCATGATCTATAGCGACGTTTGTGAGAAAAGCGTCGCTAAAAGTCATGATCTATAGCGGCGTT
*
35209070 TGTGGGATAAGCGTCGCTAAAG
66 TGTGGGAAAAGCGTCGCTAAAG
35209092 AACATGACCT
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
91 39 0.49
92 40 0.51
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (93 bp):
AGTCATGATCTATAGCGACGTTTGTGAGAAAAGCGTCGCTAAAAGTCATGATCTATAGCGGCGTT
TGTGGGAAAAGCGTCGCTAAAGGTCATG
Found at i:35209107 original size:43 final size:42
Alignment explanation
Indices: 35209009--35209107 Score: 117
Period size: 43 Copynumber: 2.3 Consensus size: 42
35208999 GGTCATGAGT
* ** **
35209009 CATGATCTATAGCGATGTTTGTGGAAAAGCGTCGCTAAAGGT
1 CATGACCTATAGCGGCGTTTGTGGAAAAGCGTCGCTAAAGAA
* *
35209051 CATGATCTATAGCGGCGTTTGTGGGATAAGCGTCGCTAAAGAA
1 CATGACCTATAGCGGCGTTTGT-GGAAAAGCGTCGCTAAAGAA
*
35209094 CATGACCTTTAGCG
1 CATGACCTATAGCG
35209108 ACATTTATTT
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 20 0.41
43 29 0.59
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (42 bp):
CATGACCTATAGCGGCGTTTGTGGAAAAGCGTCGCTAAAGAA
Found at i:35210694 original size:30 final size:30
Alignment explanation
Indices: 35210633--35210695 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
35210623 CTTCTTGGGA
* *
35210633 TTGAGAAGACCTGATATCTCATTCAATAGC
1 TTGAGAAGACCTGATATCGCATTCAAGAGC
* *
35210663 TTGAGAAGA-CTCGATATCGCGTTCAGGAGC
1 TTGAGAAGACCT-GATATCGCATTCAAGAGC
35210693 TTG
1 TTG
35210696 GGATTGAGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 2 0.07
30 26 0.93
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (30 bp):
TTGAGAAGACCTGATATCGCATTCAAGAGC
Found at i:35210696 original size:66 final size:66
Alignment explanation
Indices: 35210588--35210738 Score: 221
Period size: 66 Copynumber: 2.3 Consensus size: 66
35210578 TACGAGGACG
* **
35210588 TTCAAGAGCTTGGGAAGACTCGATATCTCGTTCAGCTTCTTGGGATTGAGAAGACCTGATATCTC
1 TTCAAGAGCTTGGGAAGACTCGATATCGCGTTCAGCAGCTTGGGATTGAGAAGACCTGATATCTC
35210653 A
66 A
* * * *
35210654 TTCAATAGCTTGAGAAGACTCGATATCGCGTTCAGGAGCTTGGGATTGAGAAGACTTGATATCTC
1 TTCAAGAGCTTGGGAAGACTCGATATCGCGTTCAGCAGCTTGGGATTGAGAAGACCTGATATCTC
*
35210719 G
66 A
*
35210720 TTCAAGATCTTGGGAAGAC
1 TTCAAGAGCTTGGGAAGAC
35210739 CAAATATTTG
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
66 74 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (66 bp):
TTCAAGAGCTTGGGAAGACTCGATATCGCGTTCAGCAGCTTGGGATTGAGAAGACCTGATATCTC
A
Found at i:35210732 original size:36 final size:35
Alignment explanation
Indices: 35210601--35210734 Score: 127
Period size: 36 Copynumber: 3.9 Consensus size: 35
35210591 AAGAGCTTGG
*
35210601 GAAGACTCGATATCTCGTTCAGCTTCTTGGGATTGA
1 GAAGACTCGATATCTCGTTCAG-ATCTTGGGATTGA
* * *
35210637 GAAGAC-CTGATATCTCATTCA-A---T-AGCTTGA
1 GAAGACTC-GATATCTCGTTCAGATCTTGGGATTGA
* *
35210667 GAAGACTCGATATCGCGTTCAGGAGCTTGGGATTGA
1 GAAGACTCGATATCTCGTTCA-GATCTTGGGATTGA
*
35210703 GAAGACTTGATATCTCGTTCAAGATCTTGGGA
1 GAAGACTCGATATCTCGTTC-AGATCTTGGGA
35210735 AGACCAAATA
Statistics
Matches: 78, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
30 22 0.28
31 2 0.03
32 1 0.01
35 2 0.03
36 50 0.64
37 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (35 bp):
GAAGACTCGATATCTCGTTCAGATCTTGGGATTGA
Found at i:35220862 original size:22 final size:22
Alignment explanation
Indices: 35220834--35220899 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
35220824 GGGATGTCTA
* * *
35220834 AGAGCCCTTTATGGTACGTTTG
1 AGAGCCCTTTAGGGGACGTATG
35220856 AGAGCCCTTTAGGGGACGTATG
1 AGAGCCCTTTAGGGGACGTATG
* * *
35220878 CGAGCCCTCTAGGGGATGTATG
1 AGAGCCCTTTAGGGGACGTATG
35220900 GAAGTCCATG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.20, C:0.20, G:0.33, T:0.27
Consensus pattern (22 bp):
AGAGCCCTTTAGGGGACGTATG
Found at i:35220971 original size:27 final size:27
Alignment explanation
Indices: 35220941--35221071 Score: 88
Period size: 27 Copynumber: 4.9 Consensus size: 27
35220931 TGGCAGTCCA
35220941 CCAAGACAATCTAAATGTGGCAA-TCTG
1 CCAAGACAATCTAAATGTGG-AAGTCTG
** *
35220968 CCAAGATGATCT-AATGTGGAAGTTTG
1 CCAAGACAATCTAAATGTGGAAGTCTG
* * * **
35220994 TCAGGACAATATAAATGTGGAAGTCCA
1 CCAAGACAATCTAAATGTGGAAGTCTG
* * * * *
35221021 CGAGGACGATGT-AATGTGGAAGTTTG
1 CCAAGACAATCTAAATGTGGAAGTCTG
* **
35221047 TCAAGATGATCTAAATGTGGAAGTC
1 CCAAGACAATCTAAATGTGGAAGTC
35221072 CATCAGGATT
Statistics
Matches: 77, Mismatches: 24, Indels: 6
0.72 0.22 0.06
Matches are distributed among these distances:
25 2 0.03
26 35 0.45
27 40 0.52
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (27 bp):
CCAAGACAATCTAAATGTGGAAGTCTG
Found at i:35226707 original size:43 final size:42
Alignment explanation
Indices: 35226616--35226727 Score: 118
Period size: 42 Copynumber: 2.7 Consensus size: 42
35226606 TGTGATTTTG
* * * ** *
35226616 TGTAAGACCATGTTTGGGACATTGGCATCGTATATGATTTCG
1 TGTAAGACCATATTTGGGACAATGGCATCATATATGATAACA
* *
35226658 TGTAAGACCCTATTTGGGACAATGGCATCAATATATTATAACA
1 TGTAAGACCATATTTGGGACAATGGCATC-ATATATGATAACA
* *
35226701 TGTAAGACCATATCTGGGA-TATGGCAT
1 TGTAAGACCATATTTGGGACAATGGCAT
35226728 TGCACGAGCT
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 33 0.57
43 25 0.43
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATTTGGGACAATGGCATCATATATGATAACA
Found at i:35235087 original size:30 final size:30
Alignment explanation
Indices: 35235053--35235119 Score: 118
Period size: 30 Copynumber: 2.2 Consensus size: 30
35235043 GTGACTCAGC
35235053 CGTGTGTGAGACAC-AGCTTGGCGACACAGT
1 CGTGTGTGAGACACGA-CTTGGCGACACAGT
35235083 CGTGTGTGAGACACGACTTGGCGACACAGT
1 CGTGTGTGAGACACGACTTGGCGACACAGT
35235113 CGTGTGT
1 CGTGTGT
35235120 CCCCTGTAGG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
30 35 0.97
31 1 0.03
ACGTcount: A:0.21, C:0.22, G:0.34, T:0.22
Consensus pattern (30 bp):
CGTGTGTGAGACACGACTTGGCGACACAGT
Found at i:35239090 original size:6 final size:6
Alignment explanation
Indices: 35239081--35239157 Score: 65
Period size: 6 Copynumber: 13.5 Consensus size: 6
35239071 TATAAATCTA
* * * **
35239081 AAAAAT -AAAAT -AAAA- ACAAAT AACAAT AAAAAT AAAAGT ACGAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
35239126 AAAAAT AAAAAT --AAAT AAAATAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAAA-AT AAAAAT AAA
35239158 TGAAATCACT
Statistics
Matches: 56, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
4 4 0.07
5 12 0.21
6 34 0.61
7 6 0.11
ACGTcount: A:0.77, C:0.04, G:0.03, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:35239110 original size:16 final size:15
Alignment explanation
Indices: 35239056--35239112 Score: 57
Period size: 14 Copynumber: 3.9 Consensus size: 15
35239046 GTGTATAATA
35239056 AAATAAAAT-AAAAC
1 AAATAAAATAAAAAC
* **
35239070 ATAT-AAATCTAAA-
1 AAATAAAATAAAAAC
35239083 AAATAAAATAAAAAC
1 AAATAAAATAAAAAC
35239098 AAATAACAATAAAAA
1 AAATAA-AATAAAAA
35239113 TAAAAGTACG
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
13 7 0.21
14 13 0.38
15 6 0.18
16 8 0.24
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.18
Consensus pattern (15 bp):
AAATAAAATAAAAAC
Found at i:35239111 original size:27 final size:27
Alignment explanation
Indices: 35239049--35239117 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 27
35239039 AAAAAAAGTG
*
35239049 TATAATAAAATAAAATAAAACATATAAA
1 TATAA-AAAATAAAATAAAACAAATAAA
*
35239077 TCTAAAAAATAAAATAAAAACAAATAACA
1 TATAAAAAATAAAAT-AAAACAAATAA-A
35239106 -AT-AAAAATAAAA
1 TATAAAAAATAAAA
35239118 GTACGAATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
27 20 0.56
28 15 0.42
29 1 0.03
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (27 bp):
TATAAAAAATAAAATAAAACAAATAAA
Found at i:35239116 original size:40 final size:41
Alignment explanation
Indices: 35239056--35239158 Score: 104
Period size: 40 Copynumber: 2.5 Consensus size: 41
35239046 GTGTATAATA
35239056 AAATAAAATA-AAACATATAAATCTAAAAA-ATAAAATAAAAAC
1 AAATAAAATATAAA-A-ATAAATCTAAAAATA-AAAATAAAAAC
* ** ** *
35239098 AAATAACA-ATAAAAATAAAAGTACGAATAAAAATAAAAAT
1 AAATAAAATATAAAAATAAATCTAAAAATAAAAATAAAAAC
35239138 AAATAAAATATAAAAATAAAT
1 AAATAAAATATAAAAATAAAT
35239159 GAAATCACTT
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
40 26 0.52
41 14 0.28
42 10 0.20
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (41 bp):
AAATAAAATATAAAAATAAATCTAAAAATAAAAATAAAAAC
Found at i:35239132 original size:24 final size:22
Alignment explanation
Indices: 35239081--35239157 Score: 86
Period size: 24 Copynumber: 3.4 Consensus size: 22
35239071 TATAAATCTA
35239081 AAAAAT-AAAATAAAAACAAAT
1 AAAAATAAAAATAAAAACAAAT
* *
35239102 AACAATAAAAATAAAAGTACGAAT
1 AAAAATAAAAATAAAA--ACAAAT
35239126 AAAAATAAAAATAAATAA-AATAT
1 AAAAATAAAAATAAA-AACAA-AT
35239149 AAAAATAAA
1 AAAAATAAA
35239158 TGAAATCACT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
21 5 0.11
22 10 0.21
23 12 0.26
24 19 0.40
25 1 0.02
ACGTcount: A:0.77, C:0.04, G:0.03, T:0.17
Consensus pattern (22 bp):
AAAAATAAAAATAAAAACAAAT
Found at i:35239152 original size:17 final size:16
Alignment explanation
Indices: 35239081--35239158 Score: 77
Period size: 16 Copynumber: 4.6 Consensus size: 16
35239071 TATAAATCTA
*
35239081 AAAAATAAAATAAAAAC
1 AAAAAT-AAATAAAAAT
*
35239098 AAATAA-CAATAAAAAT
1 AAA-AATAAATAAAAAT
*
35239114 AAAAGTACGAATAAAAAT
1 AAAAATA--AATAAAAAT
35239132 AAAAATAAATAAAATAT
1 AAAAATAAATAAAA-AT
35239149 AAAAATAAAT
1 AAAAATAAAT
35239159 GAAATCACTT
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
15 1 0.02
16 18 0.35
17 15 0.29
18 17 0.33
ACGTcount: A:0.76, C:0.04, G:0.03, T:0.18
Consensus pattern (16 bp):
AAAAATAAATAAAAAT
Found at i:35239158 original size:12 final size:11
Alignment explanation
Indices: 35239055--35239157 Score: 66
Period size: 12 Copynumber: 8.7 Consensus size: 11
35239045 AGTGTATAAT
35239055 AAAATAAAATA
1 AAAATAAAATA
35239066 AAACATATAAATCTAA
1 AAA-ATA-AAA--T-A
35239082 AAAATAAAATA
1 AAAATAAAATA
*
35239093 AAAA-CAAATA
1 AAAATAAAATA
*
35239103 ACAATAAAAATA
1 AAAAT-AAAATA
* *
35239115 AAAGTACGAATA
1 AAAATA-AAATA
35239127 AAAATAAAAATA
1 AAAAT-AAAATA
*
35239139 AATAA-AATATA
1 AA-AATAAAATA
35239150 AAAATAAA
1 AAAATAAA
35239158 TGAAATCACT
Statistics
Matches: 71, Mismatches: 10, Indels: 22
0.69 0.10 0.21
Matches are distributed among these distances:
10 10 0.14
11 18 0.25
12 26 0.37
13 6 0.08
14 3 0.04
15 4 0.06
16 4 0.06
ACGTcount: A:0.75, C:0.05, G:0.02, T:0.18
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:35239163 original size:17 final size:17
Alignment explanation
Indices: 35239105--35239163 Score: 68
Period size: 17 Copynumber: 3.5 Consensus size: 17
35239095 AACAAATAAC
*
35239105 AATAAAA-ATAAAAGTA
1 AATAAAATATAAAAATA
35239121 CGAATAAAA-ATAAAAATA
1 --AATAAAATATAAAAATA
35239139 AATAAAATATAAAAATA
1 AATAAAATATAAAAATA
*
35239156 AATGAAAT
1 AATAAAAT
35239164 CACTTCTGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
16 7 0.18
17 16 0.42
18 15 0.39
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (17 bp):
AATAAAATATAAAAATA
Found at i:35239636 original size:21 final size:22
Alignment explanation
Indices: 35239612--35239654 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
35239602 TTTTCAAAAC
* *
35239612 GTTTTAGAT-TTTTTCCTTTTT
1 GTTTTAAATCTTTTTCATTTTT
35239633 GTTTTAAATCTTTTTCATTTTT
1 GTTTTAAATCTTTTTCATTTTT
35239655 TAAGTAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.14, C:0.09, G:0.07, T:0.70
Consensus pattern (22 bp):
GTTTTAAATCTTTTTCATTTTT
Found at i:35242866 original size:33 final size:33
Alignment explanation
Indices: 35242807--35242918 Score: 136
Period size: 33 Copynumber: 3.4 Consensus size: 33
35242797 CTATGGCCTC
* * *
35242807 AATAGAGTAAGTCTACCA-AGAGAGTAAACACAA
1 AATAGAGTAAGTCCA-TAGAGACAGTAAACACAA
* * *
35242840 AATAGAGTAGGTCCATAGGGACAGTAAACACAT
1 AATAGAGTAAGTCCATAGAGACAGTAAACACAA
*
35242873 AATAGAGTAAGTCCATCGAGACAGTAAACACAA
1 AATAGAGTAAGTCCATAGAGACAGTAAACACAA
*
35242906 AATAAAGTAAGTC
1 AATAGAGTAAGTC
35242919 TACTAGACTA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
32 1 0.01
33 66 0.99
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.17
Consensus pattern (33 bp):
AATAGAGTAAGTCCATAGAGACAGTAAACACAA
Found at i:35242932 original size:33 final size:33
Alignment explanation
Indices: 35242807--35242937 Score: 133
Period size: 33 Copynumber: 4.0 Consensus size: 33
35242797 CTATGGCCTC
* * *
35242807 AATAGAGTAAGTCTACCAAGAGAGTAAACACAA
1 AATAGAGTAAGTCCACCTAGACAGTAAACACAA
* *
35242840 AATAGAGTAGGTCCA--TAGGGACAGTAAACACAT
1 AATAGAGTAAGTCCACCTA--GACAGTAAACACAA
* *
35242873 AATAGAGTAAGTCCATCGAGACAGTAAACACAA
1 AATAGAGTAAGTCCACCTAGACAGTAAACACAA
* *
35242906 AATAAAGTAAGTCTA-CTAGACTAGTAAACACA
1 AATAGAGTAAGTCCACCTAGAC-AGTAAACACA
35242938 GAACAGAGAT
Statistics
Matches: 82, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
31 1 0.01
32 5 0.06
33 75 0.91
35 1 0.01
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (33 bp):
AATAGAGTAAGTCCACCTAGACAGTAAACACAA
Found at i:35242932 original size:66 final size:65
Alignment explanation
Indices: 35242807--35242937 Score: 165
Period size: 66 Copynumber: 2.0 Consensus size: 65
35242797 CTATGGCCTC
* * * *
35242807 AATAGAGTAAGTCTACCAAGAGAGTAAACACAAAATAGAGTAGGTCCATAGGGACAGTAAACACA
1 AATAGAGTAAGTCCACCAAGACAGTAAACACAAAATAAAGTAAGTCCATA-GGACAGTAAACACA
35242872 T
65 T
* * *
35242873 AATAGAGTAAGTCCATCGAGACAGTAAACACAAAATAAAGTAAGTCTACTA-GACTAGTAAACAC
1 AATAGAGTAAGTCCACCAAGACAGTAAACACAAAATAAAGTAAGTCCA-TAGGAC-AGTAAACAC
35242937 A
64 A
35242938 GAACAGAGAT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
65 3 0.05
66 51 0.91
67 2 0.04
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (65 bp):
AATAGAGTAAGTCCACCAAGACAGTAAACACAAAATAAAGTAAGTCCATAGGACAGTAAACACAT
Found at i:35242967 original size:66 final size:65
Alignment explanation
Indices: 35242831--35242979 Score: 149
Period size: 66 Copynumber: 2.3 Consensus size: 65
35242821 ACCAAGAGAG
* * * * *
35242831 TAAACACAAAATAGAGTAGGTCCATAGGGACAGTAAACACATAATAGAGTAAGTCCATCGAGACA
1 TAAACACAAAATAAAGTAAGTCCATA-GGACAGTAAACACAGAACAGAGTAAGTACATCGAGACA
*
35242896 G
65 A
* * *
35242897 TAAACACAAAATAAAGTAAGTCTACTA-GACTAGTAAACACAGAACAGAG-ATAGTACATTGGGA
1 TAAACACAAAATAAAGTAAGTCCA-TAGGAC-AGTAAACACAGAACAGAGTA-AGTACATCGAGA
35242960 CAA
63 CAA
* *
35242963 TAAACACGAGATAAAGT
1 TAAACACAAAATAAAGT
35242980 CTACCGAGAC
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
65 4 0.06
66 63 0.91
67 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.17
Consensus pattern (65 bp):
TAAACACAAAATAAAGTAAGTCCATAGGACAGTAAACACAGAACAGAGTAAGTACATCGAGACAA
Found at i:35251087 original size:29 final size:29
Alignment explanation
Indices: 35251051--35251112 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 29
35251041 TGGTTATACC
*
35251051 ATCCCTTTCCAT-AATTCGATAGCCGAAGCT
1 ATCCTTTTCCATGAA-TCGATAGCCG-AGCT
* *
35251081 ATCCTTTTTCATGAATCGATAGTCGAGCT
1 ATCCTTTTCCATGAATCGATAGCCGAGCT
35251110 ATC
1 ATC
35251113 TATATTCATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 7 0.25
30 19 0.68
31 2 0.07
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.34
Consensus pattern (29 bp):
ATCCTTTTCCATGAATCGATAGCCGAGCT
Found at i:35251201 original size:29 final size:29
Alignment explanation
Indices: 35251048--35251445 Score: 232
Period size: 29 Copynumber: 13.5 Consensus size: 29
35251038 TGATGGTTAT
* *
35251048 ACCATCCCTTTCCATAATTCGATAGCCGAA
1 ACCATCCCTTTTCAT-ATTCGATAGTCGAA
* * * *
35251078 GCTATCCTTTTTCATGAATCGATAGTCG-A
1 ACCATCCCTTTTCAT-ATTCGATAGTCGAA
* * ** * * * **
35251107 GCTATCTATATTCATAATTTTGATGGTCGTC
1 ACCATCCCTTTTCAT-A-TTCGATAGTCGAA
* * **
35251138 ACCATCCCTTTTCATAATTTTGATGGTCGTC
1 ACCATCCCTTTTCAT-A-TTCGATAGTCGAA
* *
35251169 ACCATCCCTTTTCATATTCGATGGTCAAA
1 ACCATCCCTTTTCATATTCGATAGTCGAA
*
35251198 ACCATCCCTTTTCATATTCGATAGCCGAA
1 ACCATCCCTTTTCATATTCGATAGTCGAA
* * * **
35251227 GCTATCCCTCTTT-ATATTCGATGGTCGTC
1 ACCATCCCT-TTTCATATTCGATAGTCGAA
* * * * *
35251256 ACCATCCATTTTCGTAGTT-AATGGTC-ATC
1 ACCATCCCTTTTCATA-TTCGATAGTCGA-A
** *
35251285 ACCATCCCTTTTCATAAGCGATAGCCGAA
1 ACCATCCCTTTTCATATTCGATAGTCGAA
* *
35251314 GCTATCCCTTTTCATATTCGATAGTC-AA
1 ACCATCCCTTTTCATATTCGATAGTCGAA
* *
35251342 AGCTATCCCTTTTCATATTCGATAG-CTAA
1 A-CCATCCCTTTTCATATTCGATAGTCGAA
* **
35251371 AGCTATCCCTTTTCATATTCGATAGTCGTC
1 A-CCATCCCTTTTCATATTCGATAGTCGAA
* * *
35251401 ACCATCCATTTTCATTGTTCGATAGTTGAA
1 ACCATCCCTTTTCA-TATTCGATAGTCGAA
*
35251431 ACTATCCCTTTTCAT
1 ACCATCCCTTTTCAT
35251446 TAGTAGATGA
Statistics
Matches: 292, Mismatches: 64, Indels: 25
0.77 0.17 0.07
Matches are distributed among these distances:
28 6 0.02
29 184 0.63
30 61 0.21
31 41 0.14
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (29 bp):
ACCATCCCTTTTCATATTCGATAGTCGAA
Found at i:35251258 original size:87 final size:87
Alignment explanation
Indices: 35251141--35251395 Score: 293
Period size: 87 Copynumber: 2.9 Consensus size: 87
35251131 GGTCGTCACC
*
35251141 ATCCCTTTTCATAATTTTGATGGTCGTCACCATCCCTTTTCATATTCGATGGTCAAAACCATCCC
1 ATCCCTTTTCAT-A-TTCGATGGTCGTCACCATCCCTTTTCATATTCGATGGTCAAAACCATCCC
35251206 TTTTCATATTCGATAGCCGAAGCT
64 TTTTCATATTCGATAGCCGAAGCT
* * * **
35251230 ATCCCTCTTT-ATATTCGATGGTCGTCACCATCCATTTTCGTAGTT-AATGGTCATCACCATCCC
1 ATCCCT-TTTCATATTCGATGGTCGTCACCATCCCTTTTCATA-TTCGATGGTCAAAACCATCCC
**
35251293 TTTTCATAAGCGATAGCCGAAGCT
64 TTTTCATATTCGATAGCCGAAGCT
* ** * * * *
35251317 ATCCCTTTTCATATTCGATAGTC-AAAGCTATCCCTTTTCATATTCGATAG-CTAAAGCTATCCC
1 ATCCCTTTTCATATTCGATGGTCGTCA-CCATCCCTTTTCATATTCGATGGTC-AAAACCATCCC
35251380 TTTTCATATTCGATAG
64 TTTTCATATTCGATAG
35251396 TCGTCACCAT
Statistics
Matches: 138, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
86 7 0.05
87 117 0.85
88 3 0.02
89 8 0.06
90 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (87 bp):
ATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATATTCGATGGTCAAAACCATCCCTT
TTCATATTCGATAGCCGAAGCT
Found at i:35270384 original size:68 final size:70
Alignment explanation
Indices: 35270312--35270445 Score: 191
Period size: 72 Copynumber: 1.9 Consensus size: 70
35270302 TTTAATAATT
* * *
35270312 TTAATATTAAATTTAATTTATTACTTATC-AAAAT-AGTATTTTATTAATTTAATATTAAAGTGA
1 TTAATATTAAATTAAATTTAATACTTATCTAAAATAAATATTTTATTAATTTAATATTAAAGTGA
35270375 TTATC
66 TTATC
* *
35270380 TTAATATTAAATTAAATTTAATATTTATCTTTGAAATAAATATTTTATTAATTTAATATTAAAGT
1 TTAATATTAAATTAAATTTAATACTTATC--TAAAATAAATATTTTATTAATTTAATATTAAAGT
35270445 G
64 G
35270446 TGTGTTAGGT
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
68 26 0.46
71 4 0.07
72 27 0.47
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.50
Consensus pattern (70 bp):
TTAATATTAAATTAAATTTAATACTTATCTAAAATAAATATTTTATTAATTTAATATTAAAGTGA
TTATC
Found at i:35273518 original size:23 final size:22
Alignment explanation
Indices: 35273466--35273518 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
35273456 TCCACGTCTT
*
35273466 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
35273488 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
35273511 TTTCTTTT
1 TTTCTTTT
35273519 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:35284498 original size:43 final size:43
Alignment explanation
Indices: 35284445--35284746 Score: 365
Period size: 43 Copynumber: 6.9 Consensus size: 43
35284435 TTTTAGAACT
* * * *
35284445 AACGCTGCTAAAGGTCATGACCTTTAGCGGCGCTTTTTCCACA
1 AACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTTCCACA
* * * * *
35284488 AACGCCGCTAAAGATCATGACTTTTAACAGCGCTTTTCCCTCA
1 AACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTTCCACA
* *
35284531 AATGACGCTATAGATCATGACTTTTAGCGGCGCTTTTTCCACA
1 AACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTTCCACA
*
35284574 AACGCCGCTATAGATCATGACTTTTAGCAGTGC-CTTTCT-CACA
1 AACGCCGCTATAGATCATGACTTTTAGC-G-GCGCTTTTTCCACA
* *
35284617 AACGCCGCTATAGATCATGACTTTTAGCGACACTTTTTCCACA
1 AACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTTCCACA
* * *
35284660 AACGCCGCTATAGATCATGATCATGACTTTTAGCGGTGCCTTTCCCACA
1 AACGCCGC--T--AT-A-GATCATGACTTTTAGCGGCGCTTTTTCCACA
35284709 AACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTT
1 AACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTT
35284747 TTATAAAAGC
Statistics
Matches: 222, Mismatches: 27, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
41 1 0.00
42 6 0.03
43 165 0.74
44 7 0.03
45 5 0.02
47 3 0.01
48 1 0.00
49 34 0.15
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (43 bp):
AACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTTCCACA
Found at i:35284557 original size:86 final size:86
Alignment explanation
Indices: 35284445--35284746 Score: 415
Period size: 86 Copynumber: 3.4 Consensus size: 86
35284435 TTTTAGAACT
* * * *
35284445 AACGCTGCTAAAGGTCATGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGATCATGACT
1 AACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGATCATGACT
* * * *
35284510 TTTAACAGCGCTTTTCCCTCA
66 TTTAGCAGTGCCTTTCCCACA
* * *
35284531 AATGACGCTATAGATCATGACTTTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCATGACT
1 AACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGATCATGACT
*
35284596 TTTAGCAGTGCCTTTCTCACA
66 TTTAGCAGTGCCTTTCCCACA
* *
35284617 AACGCCGCTATAGATCATGACTTTTAGCGACACTTTTTCCACAAACGCCGCTATAGATCATGATC
1 AACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTTCCACAAACGCCGC--TA-A--A-GATC
*
35284682 ATGACTTTTAGCGGTGCCTTTCCCACA
60 ATGACTTTTAGCAGTGCCTTTCCCACA
35284709 AACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTT
1 AACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTT
35284747 TTATAAAAGC
Statistics
Matches: 189, Mismatches: 21, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
86 121 0.64
88 2 0.01
91 1 0.01
92 65 0.34
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (86 bp):
AACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGATCATGACT
TTTAGCAGTGCCTTTCCCACA
Found at i:35285134 original size:9 final size:9
Alignment explanation
Indices: 35285120--35285356 Score: 80
Period size: 9 Copynumber: 27.7 Consensus size: 9
35285110 GCATTAGCTT
35285120 TAAGTTATG
1 TAAGTTATG
*
35285129 TAAGTTATA
1 TAAGTTATG
*
35285138 T-A-TTAAG
1 TAAGTTATG
*
35285145 TAAATTATG
1 TAAGTTATG
35285154 TAAG-T-TG
1 TAAGTTATG
* *
35285161 T--CTTATA
1 TAAGTTATG
35285168 TAAGTTATG
1 TAAGTTATG
35285177 T-A-TTATG
1 TAAGTTATG
35285184 TAAGTTATG
1 TAAGTTATG
35285193 TATA-TATCATAG
1 TA-AGT-T-AT-G
35285205 T-A-TTATG
1 TAAGTTATG
**
35285212 TATTTTATG
1 TAAGTTATG
35285221 TAAGTTATG
1 TAAGTTATG
*
35285230 T--CTTATG
1 TAAGTTATG
*
35285237 TAGGTTATG
1 TAAGTTATG
35285246 TAAGTTATG
1 TAAGTTATG
35285255 T-A-TTATG
1 TAAGTTATG
*
35285262 TAAGTTATA
1 TAAGTTATG
* *
35285271 TAAATATTTG
1 TAAGT-TATG
** *
35285281 T-CTTTGTG
1 TAAGTTATG
35285289 T-A-TTATG
1 TAAGTTATG
* *
35285296 TAACTTATA
1 TAAGTTATG
*
35285305 TAATTTATG
1 TAAGTTATG
*
35285314 TAGGTTATG
1 TAAGTTATG
35285323 TATTA-TTATG
1 TA--AGTTATG
*
35285333 TAAGTTTTG
1 TAAGTTATG
**
35285342 TCGGTTATG
1 TAAGTTATG
35285351 TAAGTT
1 TAAGTT
35285357 GTAATATGAT
Statistics
Matches: 168, Mismatches: 36, Indels: 48
0.67 0.14 0.19
Matches are distributed among these distances:
6 1 0.01
7 34 0.20
8 15 0.09
9 100 0.60
10 14 0.08
11 2 0.01
12 2 0.01
ACGTcount: A:0.31, C:0.03, G:0.17, T:0.50
Consensus pattern (9 bp):
TAAGTTATG
Found at i:35285187 original size:16 final size:16
Alignment explanation
Indices: 35285148--35285444 Score: 93
Period size: 16 Copynumber: 18.1 Consensus size: 16
35285138 TATTAAGTAA
35285148 ATTATGTAAG-T-TGT
1 ATTATGTAAGTTATGT
* *
35285162 CTTATATAAGTTATGT
1 ATTATGTAAGTTATGT
35285178 ATTATGTAAGTTATGT
1 ATTATGTAAGTTATGT
* *
35285194 A-TATATCA--TA-GT
1 ATTATGTAAGTTATGT
**
35285206 ATTATGTATTTTATGT
1 ATTATGTAAGTTATGT
*
35285222 AAGTTATGT--CTTATGT
1 -A-TTATGTAAGTTATGT
35285238 AGGTTATGTAAGTTATGT
1 A--TTATGTAAGTTATGT
*
35285256 ATTATGTAAGTTATAT
1 ATTATGTAAGTTATGT
* ** *
35285272 AAATATTTGT-CTTTGTGT
1 --AT-TATGTAAGTTATGT
* *
35285290 ATTATGTAACTTATAT
1 ATTATGTAAGTTATGT
*
35285306 AATTTATGTAGGTTATGTATT
1 -A-TTATGTAAGTTATG---T
*
35285327 ATTATGTAAGTTTTGT
1 ATTATGTAAGTTATGT
*
35285343 CGGTTATGTAAG-T-TGT
1 --ATTATGTAAGTTATGT
* *
35285359 AATATGATTAA--TATTT
1 ATTATG--TAAGTTATGT
35285375 ATGTATGTAAGTTATGAT
1 AT-TATGTAAGTTATG-T
* *
35285393 ATGATTGATAAGTT-T-C
1 ATTA-TG-TAAGTTATGT
*
35285409 AGTTATATAAGTTATGT
1 A-TTATGTAAGTTATGT
35285426 ATTATGTAAGTTTATGT
1 ATTATGTAAG-TTATGT
35285443 AT
1 AT
35285445 GTAGGTTATG
Statistics
Matches: 209, Mismatches: 39, Indels: 67
0.66 0.12 0.21
Matches are distributed among these distances:
12 3 0.01
13 6 0.03
14 12 0.06
15 23 0.11
16 74 0.35
17 22 0.11
18 45 0.22
19 22 0.11
20 1 0.00
21 1 0.00
ACGTcount: A:0.31, C:0.02, G:0.17, T:0.50
Consensus pattern (16 bp):
ATTATGTAAGTTATGT
Found at i:35285244 original size:25 final size:25
Alignment explanation
Indices: 35285163--35285269 Score: 126
Period size: 25 Copynumber: 4.2 Consensus size: 25
35285153 GTAAGTTGTC
*
35285163 TTATATAAGTTATGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
**
35285188 TTATGTATA-TATCATAGTATTATGTATT
1 TTATGTA-AGT-T-AT-GTATTATGTAAG
* *
35285216 TTATGTAAGTTATGTCTTATGTAGG
1 TTATGTAAGTTATGTATTATGTAAG
35285241 TTATGTAAGTTATGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
35285266 TTAT
1 TTAT
35285270 ATAAATATTT
Statistics
Matches: 69, Mismatches: 8, Indels: 10
0.79 0.09 0.11
Matches are distributed among these distances:
25 43 0.62
26 4 0.06
27 4 0.06
28 18 0.26
ACGTcount: A:0.31, C:0.02, G:0.17, T:0.50
Consensus pattern (25 bp):
TTATGTAAGTTATGTATTATGTAAG
Found at i:35285325 original size:34 final size:36
Alignment explanation
Indices: 35285241--35285328 Score: 103
Period size: 34 Copynumber: 2.6 Consensus size: 36
35285231 CTTATGTAGG
*
35285241 TTATGTAAGTTATGTATTATGTAAGTTATATAAATA
1 TTATGTAAGTTATGTATTATGTAACTTATATAAATA
** *
35285277 TT-TGT-CTTTGTGTATTATGTAACTTATAT-AAT-
1 TTATGTAAGTTATGTATTATGTAACTTATATAAATA
*
35285309 TTATGTAGGTTATGTATTAT
1 TTATGTAAGTTATGTATTAT
35285329 TATGTAAGTT
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
32 2 0.05
33 6 0.14
34 30 0.70
35 3 0.07
36 2 0.05
ACGTcount: A:0.31, C:0.02, G:0.15, T:0.52
Consensus pattern (36 bp):
TTATGTAAGTTATGTATTATGTAACTTATATAAATA
Found at i:35285455 original size:23 final size:23
Alignment explanation
Indices: 35285427--35285470 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
35285417 AAGTTATGTA
35285427 TTATGTAAGTTTATGT-ATGTAGG
1 TTATGTAAG-TTATGTAATGTAGG
35285450 TTATGTAAGTTATGTAATGTA
1 TTATGTAAGTTATGTAATGTA
35285471 TCAATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.48
Consensus pattern (23 bp):
TTATGTAAGTTATGTAATGTAGG
Found at i:35285533 original size:19 final size:18
Alignment explanation
Indices: 35285481--35285534 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 18
35285471 TCAATTTTTA
*
35285481 AAAATATATATAAATTTT
1 AAAATATATATAAATATT
*
35285499 AAAA-ATATAT--ACATT
1 AAAATATATATAAATATT
35285514 AAAACTATATATAAATATT
1 AAAA-TATATATAAATATT
35285533 AA
1 AA
35285535 TAAGTTATGT
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
15 7 0.24
17 12 0.41
18 4 0.14
19 6 0.21
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (18 bp):
AAAATATATATAAATATT
Found at i:35285739 original size:21 final size:21
Alignment explanation
Indices: 35285715--35285854 Score: 101
Period size: 21 Copynumber: 6.5 Consensus size: 21
35285705 TTTATATTGA
**
35285715 AAATATATATATTAATAAGTT
1 AAATATATATATTAATATTTT
* *
35285736 AAAT-TAAATTTTAAAATTATATTT
1 AAATATATATATT--AA-TAT-TTT
35285760 AAA-ATATATATTAA-ATTTT
1 AAATATATATATTAATATTTT
* *
35285779 AAAAATATATATACTAATTTTTTT
1 --AAATATATATATTAA-TATTTT
35285803 AAAATATATATATTAA-ATTTT
1 -AAATATATATATTAATATTTT
*
35285824 AAAATATATATATTAA-ATCTT
1 -AAATATATATATTAATATTTT
35285845 AAATATATAT
1 AAATATATAT
35285855 TAATAAGTTA
Statistics
Matches: 98, Mismatches: 11, Indels: 21
0.75 0.08 0.16
Matches are distributed among these distances:
19 3 0.03
20 18 0.18
21 31 0.32
22 14 0.14
23 17 0.17
24 15 0.15
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (21 bp):
AAATATATATATTAATATTTT
Found at i:35285757 original size:31 final size:30
Alignment explanation
Indices: 35285721--35285788 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 30
35285711 TTGAAAATAT
35285721 ATATATTAATAAGT-TAAATTAAATTTTAAAA
1 ATATATTAA-AA-TATAAATTAAATTTTAAAA
* *
35285752 TTATATTTAAAATATATATTAAATTTTAAAA
1 ATATA-TTAAAATATAAATTAAATTTTAAAA
35285783 ATATAT
1 ATATAT
35285789 ATACTAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
30 2 0.06
31 26 0.81
32 4 0.12
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (30 bp):
ATATATTAAAATATAAATTAAATTTTAAAA
Found at i:35287007 original size:19 final size:19
Alignment explanation
Indices: 35286983--35287023 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
35286973 AGGTTAAGAC
35286983 ATATATAAATCTTCATTGA
1 ATATATAAATCTTCATTGA
*
35287002 ATATATATATCTTCATTGA
1 ATATATAAATCTTCATTGA
35287021 ATA
1 ATA
35287024 ACATATTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (19 bp):
ATATATAAATCTTCATTGA
Found at i:35287848 original size:14 final size:14
Alignment explanation
Indices: 35287829--35287861 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
35287819 AAGTTACAGT
35287829 TCCTACACTTTGAC
1 TCCTACACTTTGAC
35287843 TCCTACACTTTGAC
1 TCCTACACTTTGAC
35287857 TCCTA
1 TCCTA
35287862 TCCAGAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36
Consensus pattern (14 bp):
TCCTACACTTTGAC
Found at i:35288134 original size:28 final size:28
Alignment explanation
Indices: 35288094--35288151 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
35288084 GTGATTGAAG
*
35288094 TTGGTATCTAAACCCTAAATTCCCAAAT
1 TTGGTATCTAAACCCCAAATTCCCAAAT
35288122 TTGGTATCTAAACCCCAAATTCCCAAAT
1 TTGGTATCTAAACCCCAAATTCCCAAAT
35288150 TT
1 TT
35288152 CACTAAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.33
Consensus pattern (28 bp):
TTGGTATCTAAACCCCAAATTCCCAAAT
Found at i:35288360 original size:18 final size:20
Alignment explanation
Indices: 35288331--35288372 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
35288321 CGTTTCTAAT
35288331 TTCTGATTTCCTCCTTTG-C
1 TTCTGATTTCCTCCTTTGCC
*
35288350 TTCTG-TTTCCTTCTTTGCC
1 TTCTGATTTCCTCCTTTGCC
35288369 TTCT
1 TTCT
35288373 AGGATTCTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.02, C:0.31, G:0.10, T:0.57
Consensus pattern (20 bp):
TTCTGATTTCCTCCTTTGCC
Found at i:35289113 original size:40 final size:40
Alignment explanation
Indices: 35289047--35289122 Score: 100
Period size: 39 Copynumber: 1.9 Consensus size: 40
35289037 CATTTTTCCC
* *
35289047 AAAAATGCCACAAATGCCTATTTTTAGCGGC-ATTTTTAA
1 AAAAATGCCACAAATGCCGATCTTTAGCGGCGATTTTTAA
* *
35289086 AAAAATGCCACTAATTCTCGATCTTTAGCGGCGATTT
1 AAAAATGCCACAAATGC-CGATCTTTAGCGGCGATTT
35289123 CCATAAAGCG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 15 0.48
40 12 0.39
41 4 0.13
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (40 bp):
AAAAATGCCACAAATGCCGATCTTTAGCGGCGATTTTTAA
Found at i:35296628 original size:17 final size:18
Alignment explanation
Indices: 35296606--35296642 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
35296596 AAGTTTTATA
*
35296606 ATTTTTAGTATAT-TTTT
1 ATTTTTAATATATATTTT
35296623 ATTTTTAATATATATTTT
1 ATTTTTAATATATATTTT
35296641 AT
1 AT
35296643 AATTTTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (18 bp):
ATTTTTAATATATATTTT
Found at i:35304971 original size:22 final size:23
Alignment explanation
Indices: 35304927--35304976 Score: 75
Period size: 24 Copynumber: 2.2 Consensus size: 23
35304917 GAAGAATTCT
*
35304927 GAAGTTAAATGAGAGGTTTTGCAG
1 GAAGTTAAACGAGA-GTTTTGCAG
35304951 GAAGTTAAACGAGA-TTTTGCAG
1 GAAGTTAAACGAGAGTTTTGCAG
35304973 GAAG
1 GAAG
35304977 CTCACTACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 12 0.48
24 13 0.52
ACGTcount: A:0.36, C:0.06, G:0.32, T:0.26
Consensus pattern (23 bp):
GAAGTTAAACGAGAGTTTTGCAG
Found at i:35310291 original size:19 final size:18
Alignment explanation
Indices: 35310255--35310297 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
35310245 AAAATTTAGA
35310255 AAATAT-TTAAAAATTTT
1 AAATATATTAAAAATTTT
*
35310272 AAATATATTAAATATATTT
1 AAATATATTAAAAAT-TTT
*
35310291 ATATATA
1 AAATATA
35310298 AATGGAAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 6 0.27
18 7 0.32
19 9 0.41
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
AAATATATTAAAAATTTT
Found at i:35311240 original size:14 final size:14
Alignment explanation
Indices: 35311218--35311247 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
35311208 TAAACAAAAA
*
35311218 TTAATATATATATT
1 TTAAAATATATATT
35311232 TTAAAATATATATT
1 TTAAAATATATATT
35311246 TT
1 TT
35311248 GTTAATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTAAAATATATATT
Found at i:35320089 original size:55 final size:55
Alignment explanation
Indices: 35320030--35320353 Score: 409
Period size: 55 Copynumber: 5.9 Consensus size: 55
35320020 ACATTCTTAA
* * * *
35320030 ATGTGGAAAGTCCGCCAAGACAATCTTATGTGGAAGTCCATAAGGACTATCTGAT
1 ATGTGGAAAGTCCGCCAGGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGAT
* * * *
35320085 ATGTGGAAAGTTCGCTAGGACTATCTTATGTGGAAGTCTGTGTGGACTATCTGAT
1 ATGTGGAAAGTCCGCCAGGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGAT
* * * *
35320140 ATG-GAGAAAGTCCACCATGACTATCTTATATGGAAGTCCATGAGGACTATCTGAT
1 ATGTG-GAAAGTCCGCCAGGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGAT
* * * *
35320195 ATGTGGAAAGTCGGTCAGGACTCTCTTATGTGGAAGTCCGTAAGGACTATCTGAT
1 ATGTGGAAAGTCCGCCAGGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGAT
* * *
35320250 ATGAGGAAAGTCCGCCAAGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGGT
1 ATGTGGAAAGTCCGCCAGGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGAT
* * ** *
35320305 ATG-GGGAATTCCGTTAGGACTATCTTATGTAGAAGTCCGTGAGGACTAT
1 ATGTGGAAAGTCCGCCAGGACTATCTTATGTGGAAGTCCGTGAGGACTAT
35320354 TTGGTATAGG
Statistics
Matches: 230, Mismatches: 37, Indels: 5
0.85 0.14 0.02
Matches are distributed among these distances:
54 41 0.18
55 188 0.82
56 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (55 bp):
ATGTGGAAAGTCCGCCAGGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGAT
Found at i:35320194 original size:110 final size:110
Alignment explanation
Indices: 35320034--35320370 Score: 450
Period size: 110 Copynumber: 3.1 Consensus size: 110
35320024 TCTTAAATGT
* *
35320034 GGAAAGTCCGCCAAGACAATCTTATGTGGAAGTCCATAAGGACTATCTGATATGTGGAAAGTTCG
1 GGAAAGTCCGCCAAGACTATCTTATGTGGAAGTCCATGAGGACTATCTGATATGTGGAAAGTTCG
* *
35320099 CTAGGACTATCTTATGTGGAAGTCTGTGTGGACTATCTGATATG-
66 CTAGGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGATATGA
* * *
35320143 GAGAAAGTCCACCATGACTATCTTATATGGAAGTCCATGAGGACTATCTGATATGTGGAAAG-TC
1 G-GAAAGTCCGCCAAGACTATCTTATGTGGAAGTCCATGAGGACTATCTGATATGTGGAAAGTTC
* * *
35320207 GGTCAGGACTCTCTTATGTGGAAGTCCGTAAGGACTATCTGATATGA
65 GCT-AGGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGATATGA
* * *
35320254 GGAAAGTCCGCCAAGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGGTATG-GGGAA-TTCC
1 GGAAAGTCCGCCAAGACTATCTTATGTGGAAGTCCATGAGGACTATCTGATATGTGGAAAGTT-C
* * * *
35320317 GTTAGGACTATCTTATGTAGAAGTCCGTGAGGACTATTTGGTAT-A
65 GCTAGGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGATATGA
*
35320362 GGGAAGTCC
1 GGAAAGTCC
35320371 ATCAGGACTA
Statistics
Matches: 200, Mismatches: 23, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
108 9 0.05
109 46 0.23
110 144 0.72
111 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (110 bp):
GGAAAGTCCGCCAAGACTATCTTATGTGGAAGTCCATGAGGACTATCTGATATGTGGAAAGTTCG
CTAGGACTATCTTATGTGGAAGTCCGTGAGGACTATCTGATATGA
Found at i:35322520 original size:30 final size:30
Alignment explanation
Indices: 35322469--35322525 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
35322459 CATAAATATT
*
35322469 AAATTATTATAATAATTATAAAGTAGAGTC
1 AAATTATTATAATAATAATAAAGTAGAGTC
* *
35322499 AAATTATTA-AATTATCAATAAATTAGA
1 AAATTATTATAATAAT-AATAAAGTAGA
35322526 CTAAAACTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 5 0.22
30 18 0.78
ACGTcount: A:0.53, C:0.04, G:0.07, T:0.37
Consensus pattern (30 bp):
AAATTATTATAATAATAATAAAGTAGAGTC
Found at i:35325882 original size:4 final size:4
Alignment explanation
Indices: 35325861--35325895 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
35325851 GTTGTAAAGT
*
35325861 TTTA TTTT TTTA -TTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
35325896 CTTAGTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 3 0.11
4 25 0.89
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:35330492 original size:25 final size:23
Alignment explanation
Indices: 35330464--35330513 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 23
35330454 GAACAAAAAG
35330464 AAAATAT-TTTATGTTTAAAATATTT
1 AAAATATATTT-T-TTTAAAA-ATTT
35330489 AAAATATATTTTTTTAAAAATTT
1 AAAATATATTTTTTTAAAAATTT
35330512 AA
1 AA
35330514 TTAATAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
23 6 0.25
24 7 0.29
25 8 0.33
26 3 0.12
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
AAAATATATTTTTTTAAAAATTT
Found at i:35333648 original size:20 final size:20
Alignment explanation
Indices: 35333623--35333662 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
35333613 CAGAAAATGA
35333623 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
35333643 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
35333663 GAAAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:35333776 original size:20 final size:20
Alignment explanation
Indices: 35333751--35333793 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
35333741 AGAAAAGTTG
* *
35333751 TTTATACATATATTAATAAA
1 TTTATACACATAGTAATAAA
*
35333771 TTTATATACATAGTAATAAA
1 TTTATACACATAGTAATAAA
35333791 TTT
1 TTT
35333794 TTATATTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (20 bp):
TTTATACACATAGTAATAAA
Found at i:35335810 original size:12 final size:12
Alignment explanation
Indices: 35335795--35335831 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
35335785 TGTTAAGGAT
35335795 AGGGGAAAGGGA
1 AGGGGAAAGGGA
35335807 AGGGG-AAGGGA
1 AGGGGAAAGGGA
*
35335818 AAGGGAAAGGGA
1 AGGGGAAAGGGA
35335830 AG
1 AG
35335832 ATCGGTGTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
11 10 0.45
12 12 0.55
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (12 bp):
AGGGGAAAGGGA
Found at i:35335817 original size:17 final size:17
Alignment explanation
Indices: 35335797--35335831 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
35335787 TTAAGGATAG
*
35335797 GGGAAAGGGAAGGGGAA
1 GGGAAAGGGAAAGGGAA
35335814 GGGAAAGGGAAAGGGAA
1 GGGAAAGGGAAAGGGAA
35335831 G
1 G
35335832 ATCGGTGTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (17 bp):
GGGAAAGGGAAAGGGAA
Found at i:35335829 original size:6 final size:6
Alignment explanation
Indices: 35335797--35335830 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
35335787 TTAAGGATAG
*
35335797 GGGAAA GGG-AA GGGGAA GGGAAA GGGAAA GGGAA
1 GGGAAA GGGAAA GGGAAA GGGAAA GGGAAA GGGAA
35335831 GATCGGTGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (6 bp):
GGGAAA
Found at i:35337350 original size:50 final size:49
Alignment explanation
Indices: 35337272--35337416 Score: 184
Period size: 49 Copynumber: 2.9 Consensus size: 49
35337262 TTTTCTGTAC
* * * * *
35337272 TGCCAATGCCATATCTCAGATATTGTCTTACATGGGAGATCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CTCTCATATCGG
* * *
35337322 TGCCCATGCCATGTCCTAGACATGGTCTTACA-GGGTACTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGG-ACTCTCATATCGG
35337371 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CTCTCATA
35337417 ATCTCAATGA
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
49 44 0.54
50 37 0.46
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTCTCATATCGG
Found at i:35345097 original size:50 final size:50
Alignment explanation
Indices: 35345043--35345149 Score: 135
Period size: 50 Copynumber: 2.1 Consensus size: 50
35345033 ATATGAGAGT
* * *
35345043 TCTCATATCAGTGCCCATGCCATATCCTAGACATGGTCTTAC-GGGGTACC
1 TCTCATATCAGTGCCAACGCCATATCCCAGACATGGTCTTACAGGGG-ACC
* * * *
35345093 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATATCAGTGCCAACGCCATATCCCAGACATGGTCTTACAGGGGACC
35345143 TCTCATA
1 TCTCATA
35345150 ATCTCAATGA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 45 0.94
51 3 0.06
ACGTcount: A:0.21, C:0.32, G:0.20, T:0.27
Consensus pattern (50 bp):
TCTCATATCAGTGCCAACGCCATATCCCAGACATGGTCTTACAGGGGACC
Found at i:35361952 original size:27 final size:27
Alignment explanation
Indices: 35361921--35362098 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
35361911 TAAATTGTAC
35361921 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
35361948 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
35361974 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
35362002 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
35362030 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
35362057 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
35362084 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
35362099 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:35362035 original size:82 final size:81
Alignment explanation
Indices: 35361922--35362077 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
35361912 AAATTGTACA
* *
35361922 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
35361986 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
35362003 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
35362068 TGCGAGTTGA
65 TGCGAATTGA
35362078 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:35362089 original size:82 final size:81
Alignment explanation
Indices: 35361918--35362098 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
35361908 GATTAAATTG
* *
35361918 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
35361983 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
35361999 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
35362063 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
35362081 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
35362099 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:35380723 original size:20 final size:20
Alignment explanation
Indices: 35380688--35380738 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
35380678 GTATCGATCT
*
35380688 GGTATCGATACCTTT-CTGAA
1 GGTATCGATATCTTTCCT-AA
*
35380708 GGTATCGATATGTTTCCTAA
1 GGTATCGATATCTTTCCTAA
*
35380728 TGTATCGATAT
1 GGTATCGATAT
35380739 TCCTGTTCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 25 0.93
21 2 0.07
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (20 bp):
GGTATCGATATCTTTCCTAA
Found at i:35382735 original size:6 final size:6
Alignment explanation
Indices: 35382721--35382854 Score: 205
Period size: 6 Copynumber: 22.3 Consensus size: 6
35382711 ATGATTTAAA
* * * * ** *
35382721 TGTGTG TGCGTG TGCGTG CGTGCG TGTGCA TGTATG TGTGTG TGTGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
35382769 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
35382817 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TG
35382855 CGTTTCCTTC
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 118 1.00
ACGTcount: A:0.01, C:0.04, G:0.49, T:0.46
Consensus pattern (6 bp):
TGTGTG
Found at i:35382739 original size:10 final size:10
Alignment explanation
Indices: 35382721--35382854 Score: 205
Period size: 10 Copynumber: 13.4 Consensus size: 10
35382711 ATGATTTAAA
*
35382721 TGTGTGTGCG
1 TGTGTGTGTG
* *
35382731 TGTGCGTGCG
1 TGTGTGTGTG
* **
35382741 TGCGTGTGCA
1 TGTGTGTGTG
*
35382751 TGTATGTGTG
1 TGTGTGTGTG
35382761 TGTGTGTGTG
1 TGTGTGTGTG
35382771 TGTGTGTGTG
1 TGTGTGTGTG
35382781 TGTGTGTGTG
1 TGTGTGTGTG
35382791 TGTGTGTGTG
1 TGTGTGTGTG
35382801 TGTGTGTGTG
1 TGTGTGTGTG
35382811 TGTGTGTGTG
1 TGTGTGTGTG
35382821 TGTGTGTGTG
1 TGTGTGTGTG
35382831 TGTGTGTGTG
1 TGTGTGTGTG
35382841 TGTGTGTGTG
1 TGTGTGTGTG
35382851 TGTG
1 TGTG
35382855 CGTTTCCTTC
Statistics
Matches: 115, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 115 1.00
ACGTcount: A:0.01, C:0.04, G:0.49, T:0.46
Consensus pattern (10 bp):
TGTGTGTGTG
Found at i:35382762 original size:4 final size:4
Alignment explanation
Indices: 35382721--35382854 Score: 205
Period size: 4 Copynumber: 33.5 Consensus size: 4
35382711 ATGATTTAAA
* * * * ** *
35382721 TGTG TGTG CGTG TGCG TGCG TGCG TGTG CATG TATG TGTG TGTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
35382769 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG
35382817 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TG
1 TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TGTG TG
35382855 CGTTTCCTTC
Statistics
Matches: 122, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 122 1.00
ACGTcount: A:0.01, C:0.04, G:0.49, T:0.46
Consensus pattern (4 bp):
TGTG
Found at i:35390660 original size:24 final size:24
Alignment explanation
Indices: 35390633--35390678 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
35390623 AGAACAATCC
* *
35390633 CAAAAGGAAATGCAGGAGCAGCTT
1 CAAAAGCAAATGAAGGAGCAGCTT
*
35390657 CAAAAGCAAATGAATGAGCAGC
1 CAAAAGCAAATGAAGGAGCAGC
35390679 AAAAAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (24 bp):
CAAAAGCAAATGAAGGAGCAGCTT
Found at i:35392946 original size:10 final size:10
Alignment explanation
Indices: 35392931--35392968 Score: 53
Period size: 9 Copynumber: 4.0 Consensus size: 10
35392921 AAAAGGGGAT
35392931 GACAAAAAAA
1 GACAAAAAAA
35392941 GAC-AAAAAA
1 GACAAAAAAA
35392950 -ACAAAAAAA
1 GACAAAAAAA
*
35392959 AACAAAAAAA
1 GACAAAAAAA
35392969 AAAAAACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 2 0.08
9 12 0.46
10 12 0.46
ACGTcount: A:0.84, C:0.11, G:0.05, T:0.00
Consensus pattern (10 bp):
GACAAAAAAA
Found at i:35392953 original size:8 final size:8
Alignment explanation
Indices: 35392935--35392979 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
35392925 GGGGATGACA
35392935 AAAAAAGAC
1 AAAAAA-AC
35392944 AAAAAAAC
1 AAAAAAAC
35392952 AAAAAAA-
1 AAAAAAAC
*
35392959 AACAAAAAA
1 AA-AAAAAC
35392968 AAAAAAAC
1 AAAAAAAC
35392976 AAAA
1 AAAA
35392980 TCTACTAGGG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
7 2 0.06
8 23 0.70
9 8 0.24
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:35392955 original size:18 final size:18
Alignment explanation
Indices: 35392932--35392974 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
35392922 AAAGGGGATG
*
35392932 ACAAAAAAAGACAAAAAA
1 ACAAAAAAAAACAAAAAA
35392950 ACAAAAAAAAACAAAAAA
1 ACAAAAAAAAACAAAAAA
35392968 A-AAAAAA
1 ACAAAAAA
35392975 CAAAATCTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 6 0.25
18 18 0.75
ACGTcount: A:0.88, C:0.09, G:0.02, T:0.00
Consensus pattern (18 bp):
ACAAAAAAAAACAAAAAA
Found at i:35392969 original size:10 final size:10
Alignment explanation
Indices: 35392934--35392979 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
35392924 AGGGGATGAC
* *
35392934 AAAAAAAGAC
1 AAAAAAACAA
35392944 AAAAAAACAA
1 AAAAAAACAA
35392954 AAAAAAACAA
1 AAAAAAACAA
35392964 AAAAAAA-AA
1 AAAAAAACAA
*
35392973 AACAAAA
1 AAAAAAA
35392980 TCTACTAGGG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
9 8 0.24
10 25 0.76
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (10 bp):
AAAAAAACAA
Found at i:35394397 original size:132 final size:132
Alignment explanation
Indices: 35394217--35394860 Score: 947
Period size: 132 Copynumber: 4.9 Consensus size: 132
35394207 TTGACAGCGA
* * * * *
35394217 AGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTAAAACTAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAAT
* *
35394282 TCTACTTCCCTAGACAACAGTAGAATAGATTGAAGACTTT-AGATCTTATC-CCACTAAGCAGTA
66 TCTACTTCCCTAGGCAACAGTGGAATAGATTGAAGA-TTTCAGATCTTATCTCC-CTAAGCAGTA
35394345 GTGG
129 GTGG
* * * *
35394349 AGCAGATCGAAGATGGCGGATTTTACCTCCTTGTGGTTATAGTAGAGTACATTGAAGCCAATAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAAT
* *
35394414 TCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAAATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTAGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
35394479 GG
131 GG
* * *
35394481 AGCAGATCGAAGATGGCAGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCTAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAAT
*
35394546 TCTACTTCCCTAGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCTGTAGT
66 TCTACTTCCCTAGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
35394611 GG
131 GG
* *
35394613 AGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTATAGTGGAGGACATTGAAGCTAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAAT
* *
35394678 TCTACTTCCCT-GGTCAACAGTGGAATAGATTGAAGATTTCAGATCTTAGCTCCCTAAGCTGTAG
66 TCTACTTCCCTAGG-CAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAG
35394742 TGG
130 TGG
* *
35394745 AGTAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAAT
* * * * * *
35394810 CCTACCTCCCT-GGTCAGCAGTGGAATAGGTTGGAGATTGTAAG-TCTTATCT
66 TCTACTTCCCTAGG-CAACAGTGGAATAGATTGAAGATT-TCAGATCTTATCT
35394861 ACCTGCAGTT
Statistics
Matches: 472, Mismatches: 36, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
131 5 0.01
132 462 0.98
133 5 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.30
Consensus pattern (132 bp):
AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAAT
TCTACTTCCCTAGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
GG
Found at i:35394643 original size:44 final size:44
Alignment explanation
Indices: 35394463--35394776 Score: 109
Period size: 44 Copynumber: 7.1 Consensus size: 44
35394453 CAAATCTTAT
* **
35394463 CTCCCTAAGC-AGTAGTGGAGCAGATCGAAGATGGCAGATTTTAC
1 CTCCCTAAGCTA-TAGTGGAGTAGATCGAAGATGGTGGATTTTAC
* ** * * * * * * * *
35394507 CTCCTTGTGGTTACAGTGGAGTACATTGAAGCTAGT-AATTCTAC
1 CTCCCT-AAGCTATAGTGGAGTAGATCGAAGATGGTGGATTTTAC
* * * * * * * * * *
35394551 TTCCCTAGGCAACAGTGGAATAGATTGAAGAT-TTCAGATCTTAT
1 CTCCCTAAGCTATAGTGGAGTAGATCGAAGATGGT-GGATTTTAC
* *
35394595 CTCCCTAAGCTGTAGTGGAGCAGATCGAAGATGGTGGATTTTAC
1 CTCCCTAAGCTATAGTGGAGTAGATCGAAGATGGTGGATTTTAC
** * * * * * * * *
35394639 CTCCCTGTGGTTATAGTGGAGGACATTGAAGCTAGT-AATTCTAC
1 CTCCCT-AAGCTATAGTGGAGTAGATCGAAGATGGTGGATTTTAC
* * * * * * * * * *
35394683 TTCCCT-GGTCAACAGTGGAATAGATTGAAGAT-TTCAGATCTTAG
1 CTCCCTAAG-CTATAGTGGAGTAGATCGAAGATGGT-GGATTTTAC
*
35394727 CTCCCTAAGCTGTAGTGGAGTAGATCGAAGATGGTGGATTTTAC
1 CTCCCTAAGCTATAGTGGAGTAGATCGAAGATGGTGGATTTTAC
35394771 CTCCCT
1 CTCCCT
35394777 GTGGTTATAG
Statistics
Matches: 186, Mismatches: 73, Indels: 22
0.66 0.26 0.08
Matches are distributed among these distances:
42 4 0.02
43 36 0.19
44 105 0.56
45 40 0.22
46 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (44 bp):
CTCCCTAAGCTATAGTGGAGTAGATCGAAGATGGTGGATTTTAC
Found at i:35394816 original size:44 final size:45
Alignment explanation
Indices: 35394636--35394821 Score: 105
Period size: 44 Copynumber: 4.2 Consensus size: 45
35394626 TGGTGGATTT
* * *
35394636 TACCTCCCTGTGGTTATAGTGGAGGACATTGAAGCTAGT-AATTC
1 TACCTCCCTGTGGTTATAGTGGAGTACATTGAAGATAGTCAATCC
* * * * * * *
35394680 TACTTCCC--TGGTCAACAGTGGAATAGATTGAAGAT-TTCAGATCT
1 TACCTCCCTGTGGT-TATAGTGGAGTACATTGAAGATAGTCA-ATCC
* ** * * * * * ** **
35394724 TAGCTCCCT-AAGCTGTAGTGGAGTAGATCGAAGATGGTGGATTT
1 TACCTCCCTGTGGTTATAGTGGAGTACATTGAAGATAGTCAATCC
*
35394768 TACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGT-AATCC
1 TACCTCCCTGTGGTTATAGTGGAGTACATTGAAGATAGTCAATCC
35394812 TACCTCCCTG
1 TACCTCCCTG
35394822 GTCAGCAGTG
Statistics
Matches: 100, Mismatches: 36, Indels: 12
0.68 0.24 0.08
Matches are distributed among these distances:
42 5 0.05
43 17 0.17
44 55 0.55
45 23 0.23
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (45 bp):
TACCTCCCTGTGGTTATAGTGGAGTACATTGAAGATAGTCAATCC
Found at i:35406627 original size:27 final size:27
Alignment explanation
Indices: 35406597--35406774 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
35406587 ATATTGAGTC
* * * *
35406597 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
35406624 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35406651 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
35406679 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
35406706 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
35406733 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35406760 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35406775 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:35406736 original size:82 final size:81
Alignment explanation
Indices: 35406618--35406773 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
35406608 TGCTATATAA
* *
35406618 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
35406683 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
35406700 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
35406764 CACTTAGTGC
65 CACTTAGTGC
35406774 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:35414699 original size:27 final size:27
Alignment explanation
Indices: 35414660--35414837 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
35414650 ATTTTGAGTC
* * * *
35414660 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
35414687 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35414714 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
35414742 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
35414769 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
35414796 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35414823 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35414838 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:35414799 original size:82 final size:81
Alignment explanation
Indices: 35414681--35414836 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
35414671 TGCTATATAA
* *
35414681 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
35414746 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
35414763 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
35414827 CACTTAGTGC
65 CACTTAGTGC
35414837 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:35425774 original size:104 final size:102
Alignment explanation
Indices: 35425655--35425897 Score: 361
Period size: 103 Copynumber: 2.4 Consensus size: 102
35425645 ATCTGTTTTC
*
35425655 TTTTAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTCAACTATTT
1 TTTTAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGA-TTTGTTTCAACTATTT
* *
35425720 CAAAATAAAAGTTTTGATTTTTAAGAAAAATAGTATTT
65 CAAAATAAAAGCTTTGATCTTTAAGAAAAATAGTATTT
35425758 TTTTAAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTGTTTCAACTATTT
1 TTTT-AGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTGTTTCAACTATTT
* *
35425823 CAAAATAAAAGCTTTGATCTTTAATAAAAATAGT-GTT
65 CAAAATAAAAGCTTTGATCTTTAAGAAAAATAGTATTT
* *
35425860 TTTT--T--TTTAAAAGAGAAAGTTTAGATTTTTAAAATAAA
1 TTTTAGTCATTTTAAAG-GAAAGTTTAAATTTTTAAAATAAA
35425898 ATTATGTTTT
Statistics
Matches: 131, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
97 7 0.05
98 23 0.18
99 1 0.01
102 6 0.05
103 50 0.38
104 44 0.34
ACGTcount: A:0.40, C:0.04, G:0.10, T:0.46
Consensus pattern (102 bp):
TTTTAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGATTTGTTTCAACTATTTC
AAAATAAAAGCTTTGATCTTTAAGAAAAATAGTATTT
Found at i:35425852 original size:103 final size:102
Alignment explanation
Indices: 35425638--35425897 Score: 368
Period size: 104 Copynumber: 2.5 Consensus size: 102
35425628 GATTTTAAAA
*
35425638 AATAAAAATCTGTTTTCTTTTAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGA
1 AATAAAAAT-AGTTTT-TTTTAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGA
* * *
35425703 TTTTTTTTCAACTATTTCAAAATAAAAGTTTTGATTTTT
64 TTTTGTTTCAACTATTTCAAAATAAAAGCTTTGATCTTT
*
35425742 AAGAAAAATAGTATTTTTTTAAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGA
1 AATAAAAATAGT-TTTTTTT-AGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGA
35425807 -TTTGTTTCAACTATTTCAAAATAAAAGCTTTGATCTTT
64 TTTTGTTTCAACTATTTCAAAATAAAAGCTTTGATCTTT
* * *
35425845 AATAAAAATAGTGTTTTTT--T--TTTAAAAGAGAAAGTTTAGATTTTTAAAATAAA
1 AATAAAAATAGTTTTTTTTAGTCATTTTAAAG-GAAAGTTTAAATTTTTAAAATAAA
35425898 ATTATGTTTT
Statistics
Matches: 144, Mismatches: 9, Indels: 12
0.87 0.05 0.07
Matches are distributed among these distances:
97 7 0.05
98 23 0.16
99 1 0.01
102 6 0.04
103 52 0.36
104 55 0.38
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (102 bp):
AATAAAAATAGTTTTTTTTAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAATAAAGTTTTGATT
TTGTTTCAACTATTTCAAAATAAAAGCTTTGATCTTT
Found at i:35427226 original size:14 final size:14
Alignment explanation
Indices: 35427207--35427236 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
35427197 AGAAACTTTT
35427207 TAAGAAAGCTAATA
1 TAAGAAAGCTAATA
35427221 TAAGAAAGCTAATA
1 TAAGAAAGCTAATA
35427235 TA
1 TA
35427237 TATTACTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.13, T:0.23
Consensus pattern (14 bp):
TAAGAAAGCTAATA
Found at i:35430823 original size:20 final size:20
Alignment explanation
Indices: 35430800--35430838 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
35430790 TCAATCATGC
* *
35430800 ATTCATTCATTCATCCATTA
1 ATTCACTCATTCACCCATTA
35430820 ATTCACTCATTCACCCATT
1 ATTCACTCATTCACCCATT
35430839 TGTTTATTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.31, G:0.00, T:0.41
Consensus pattern (20 bp):
ATTCACTCATTCACCCATTA
Found at i:35442833 original size:30 final size:30
Alignment explanation
Indices: 35442799--35442858 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
35442789 AAAATTAAGT
*
35442799 TTGAATCTAGAAAAATATACTTTCGGGGTA
1 TTGAATCTAGAAAAATATACTTTCAGGGTA
* *
35442829 TTGAATCTAGCAAAATGTACTTTCAGGGTA
1 TTGAATCTAGAAAAATATACTTTCAGGGTA
35442859 AAATTAGGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (30 bp):
TTGAATCTAGAAAAATATACTTTCAGGGTA
Found at i:35451515 original size:5 final size:5
Alignment explanation
Indices: 35451505--35451530 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
35451495 AGCAAAACTT
35451505 TCTTC TCTTC TCTTC TCTTC TCTTC T
1 TCTTC TCTTC TCTTC TCTTC TCTTC T
35451531 AACGTTGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (5 bp):
TCTTC
Found at i:35451933 original size:30 final size:31
Alignment explanation
Indices: 35451877--35451934 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
35451867 CACTCTTAAA
** *
35451877 ATATTTACACTATTGGTCCTTCAAATTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTTC
35451908 ATATTTACACTA-TAATCCCTCAAATTT
1 ATATTTACACTATTAATCCCTCAAATTT
35451935 CGAGTATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 12 0.50
31 12 0.50
ACGTcount: A:0.31, C:0.21, G:0.03, T:0.45
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTCAAATTTTTC
Found at i:35452127 original size:23 final size:23
Alignment explanation
Indices: 35452099--35452142 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
35452089 CTTTCTTACT
*
35452099 GTAGTAATTTTTGGGGTATTATA
1 GTAGTAATTTTTGGGATATTATA
35452122 GTAGTAATTTTTGGGATATTA
1 GTAGTAATTTTTGGGATATTA
35452143 CAGGAAGAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (23 bp):
GTAGTAATTTTTGGGATATTATA
Found at i:35452220 original size:42 final size:42
Alignment explanation
Indices: 35452161--35452542 Score: 516
Period size: 42 Copynumber: 9.1 Consensus size: 42
35452151 ACGGAAAGCA
35452161 TTCATTGCATTTAGAGGCCCAGGTGTGGAGG-CTCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTC-CATTTACTT
* *
35452203 TTCATTGCATTTAGAGGCCCACGTGTGGAGGTCCATTGACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * * *
35452245 TTCATTGCATTTAAAGGTCCATGTGTGGAAGTTCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
35452287 TTCATTGCATTTAGAGGCCCACGTGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
35452329 TTTATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
35452371 TTCATTACATTTAGAGGCCCATGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
35452413 TTCATTGCATTTAGAGGCCCTA-GTGTAGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCC-AGGTGTGGAGGTCCATTTACTT
* * **
35452455 TTCATTGCATTTAAAGACTTAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * * *
35452497 TTCATTGCATTTAAAAGCCCAAGTGTGGATGTTCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
35452539 TTCA
1 TTCA
35452543 CTATATTATA
Statistics
Matches: 301, Mismatches: 36, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
41 1 0.00
42 298 0.99
43 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.37
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
Found at i:35453748 original size:20 final size:20
Alignment explanation
Indices: 35453723--35453767 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
35453713 TAAATATACA
35453723 TAATTAAAATT-AGACACAAT
1 TAATT-AAATTAAGACACAAT
* *
35453743 TAATTAAGTTAAGACACAGT
1 TAATTAAATTAAGACACAAT
35453763 TAATT
1 TAATT
35453768 CGGTTGGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.33
Consensus pattern (20 bp):
TAATTAAATTAAGACACAAT
Found at i:35455117 original size:93 final size:93
Alignment explanation
Indices: 35455020--35455196 Score: 238
Period size: 94 Copynumber: 1.9 Consensus size: 93
35455010 TTTGTAGTCA
*
35455020 TTTTAAAG-GAAAGTTTA-ATTTTTTTTAAAA-AAAA-TTTGATTTTTTTCAAGTATTTCAAAAT
1 TTTTAAAGAGAAAGTTTAGA---TTTTTAAAATAAAATTTTGATTTTTTTCAACTATTTCAAAAT
35455081 AAAAGCTTTGATCT-TTAAGAAAAATAGTGTTT
63 AAAA-CTTTGAT-TGTTAAGAAAAATAGTGTTT
**
35455113 TTTTAAAGAGAAAGTTTAGATTTTTAAAATAAAATTTTGATTTTTTTCAACTATTTTGAAATAAA
1 TTTTAAAGAGAAAGTTTAGATTTTTAAAATAAAATTTTGATTTTTTTCAACTATTTCAAAATAAA
*
35455178 ATTTTGATTGTTAAGAAAA
66 ACTTTGATTGTTAAGAAAA
35455197 GTAATAAATT
Statistics
Matches: 75, Mismatches: 4, Indels: 10
0.84 0.04 0.11
Matches are distributed among these distances:
92 10 0.13
93 27 0.36
94 37 0.49
95 1 0.01
ACGTcount: A:0.41, C:0.03, G:0.11, T:0.45
Consensus pattern (93 bp):
TTTTAAAGAGAAAGTTTAGATTTTTAAAATAAAATTTTGATTTTTTTCAACTATTTCAAAATAAA
ACTTTGATTGTTAAGAAAAATAGTGTTT
Found at i:35455147 original size:144 final size:144
Alignment explanation
Indices: 35454837--35455146 Score: 400
Period size: 144 Copynumber: 2.2 Consensus size: 144
35454827 AAAAAAGGAG
****
35454837 AAAGTTTAGATTTTAAAAAATAAAAA-A-A-AAAAT-TAGTCATTTTAAAGGAAAGTTTAAAATT
1 AAAGTTTAGATTTTAAAAAATAAAAATATATTTTTTGTAGTCATTTTAAAGGAAAGTTTAAAATT
* * *
35454898 TTAAAACAAAGTTTTGATTTTTTTTAACTATTTCAAAATAAAAGCTTTGATCATTAATAAAAATA
66 TTAAAACAAAGATTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCATTAAGAAAAATA
*
35454963 ATTTTTTTTTAAAA
131 ATGTTTTTTTAAAA
* **
35454977 AGAGTTTAGATTTTAAAAAATAAAAATATATTTTTTGTAGTCATTTTAAAGGAAAGTTTAATTTT
1 AAAGTTTAGATTTTAAAAAATAAAAATATATTTTTTGTAGTCATTTTAAAGGAAAGTTTAA--AA
* *
35455042 TTTTAAAA-AAA-ATTTGATTTTTTTCAAGTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAAA
64 TTTTAAAACAAAGATTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCATTAAGAAAAA
*
35455105 TAGTGTTTTTTTAAAGA
129 TAATGTTTTTTTAAA-A
*
35455122 GAAAGTTTAGATTTT-TAAAATAAAA
1 -AAAGTTTAGATTTTAAAAAATAAAA
35455147 TTTTGATTTT
Statistics
Matches: 146, Mismatches: 16, Indels: 11
0.84 0.09 0.06
Matches are distributed among these distances:
140 25 0.17
141 1 0.01
142 1 0.01
143 1 0.01
144 84 0.58
145 13 0.09
146 21 0.14
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.42
Consensus pattern (144 bp):
AAAGTTTAGATTTTAAAAAATAAAAATATATTTTTTGTAGTCATTTTAAAGGAAAGTTTAAAATT
TTAAAACAAAGATTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCATTAAGAAAAATA
ATGTTTTTTTAAAA
Found at i:35455154 original size:20 final size:21
Alignment explanation
Indices: 35455112--35455157 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
35455102 AAATAGTGTT
*
35455112 TTTTTAAAGAGAAAGTTTAGA
1 TTTTTAAAGAGAAAATTTAGA
* *
35455133 TTTTTAAA-ATAAAATTTTGA
1 TTTTTAAAGAGAAAATTTAGA
35455153 TTTTT
1 TTTTT
35455158 TTCAACTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (21 bp):
TTTTTAAAGAGAAAATTTAGA
Found at i:35455158 original size:21 final size:22
Alignment explanation
Indices: 35455111--35455158 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
35455101 AAAATAGTGT
*
35455111 TTTTTTAAAGAGAAAGTTTAGA
1 TTTTTTAAAGAGAAAATTTAGA
* *
35455133 -TTTTTAAA-ATAAAATTTTGA
1 TTTTTTAAAGAGAAAATTTAGA
35455153 TTTTTT
1 TTTTTT
35455159 TCAACTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (22 bp):
TTTTTTAAAGAGAAAATTTAGA
Found at i:35455246 original size:94 final size:94
Alignment explanation
Indices: 35455046--35455246 Score: 221
Period size: 94 Copynumber: 2.1 Consensus size: 94
35455036 AATTTTTTTT
* * **
35455046 AAAAAAAATTTGATTTTTTTCAAGTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAAATAGTGT
1 AAAAAAAATTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAAATAATAA
* **
35455111 TTTTTTAAAGAGAAAGTTTAGATTTTTAA
66 TTTTTTAAAGAGAAACTTTAGATTTCAAA
* * ** * *
35455140 AATAAAATTTTGATTTTTTTCAACTATTTTGAAATAAAA-TTTTGAT-TGTTAAGAAAAGTAATA
1 AAAAAAAATTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCT-TTAAGAAAAATAAT-
35455203 AATTTTTTAAAGA-AAACTTT-GATTATGCAAA
64 AATTTTTTAAAGAGAAACTTTAGATT-T-CAAA
35455234 AAAAAAAATTTGA
1 AAAAAAAATTTGA
35455247 CCATTGGGCT
Statistics
Matches: 88, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
92 5 0.06
93 25 0.28
94 58 0.66
ACGTcount: A:0.45, C:0.04, G:0.10, T:0.41
Consensus pattern (94 bp):
AAAAAAAATTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAAATAATAA
TTTTTTAAAGAGAAACTTTAGATTTCAAA
Found at i:35457550 original size:27 final size:27
Alignment explanation
Indices: 35457518--35457575 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
35457508 TTCCAAATGG
* * *
35457518 TAAACACGGGTTAGTCTACCGAGACAA
1 TAAACACAGGATAGTCCACCGAGACAA
*
35457545 TAAACACAGGATAGTCCATCGAGACAA
1 TAAACACAGGATAGTCCACCGAGACAA
35457572 TAAA
1 TAAA
35457576 AATACGGTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.43, C:0.21, G:0.19, T:0.17
Consensus pattern (27 bp):
TAAACACAGGATAGTCCACCGAGACAA
Found at i:35464414 original size:98 final size:98
Alignment explanation
Indices: 35464242--35464436 Score: 336
Period size: 98 Copynumber: 2.0 Consensus size: 98
35464232 TTTGCTCAAA
* *
35464242 TACTTTAGTTTTAATCATGTGTTTTCTTTTCTTCTTACTTTTAGTTTGTCTGTTTTTGTTTTTGT
1 TACTTTAGTTTTAATCATGTGTTTTCTTTTCGTCTTACTTTTAGTTTGTCTATTTTTGTTTTTGT
* * *
35464307 TTTTTGTTTACTTGAGGACAAGCAATGACTTAG
66 TTTTCGTTTACTTAAGGACAAACAATGACTTAG
*
35464340 TACTTTAGTTTTAATCATGTGTTTTCTTTTCGTCTTATTTTTAGTTTGTCTATTTTTGTTTTTGT
1 TACTTTAGTTTTAATCATGTGTTTTCTTTTCGTCTTACTTTTAGTTTGTCTATTTTTGTTTTTGT
35464405 TTTTCGTTTACTTAAGGACAAACAATGACTTA
66 TTTTCGTTTACTTAAGGACAAACAATGACTTA
35464437 AGTGTGGGGG
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.18, C:0.11, G:0.14, T:0.57
Consensus pattern (98 bp):
TACTTTAGTTTTAATCATGTGTTTTCTTTTCGTCTTACTTTTAGTTTGTCTATTTTTGTTTTTGT
TTTTCGTTTACTTAAGGACAAACAATGACTTAG
Found at i:35466509 original size:5 final size:5
Alignment explanation
Indices: 35466495--35466527 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
35466485 AAGTATTAAG
35466495 TATA- TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATA
35466528 ATGATAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:35466602 original size:15 final size:16
Alignment explanation
Indices: 35466577--35466607 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
35466567 GCAAAATGAA
35466577 AAAGAAAAGGAGAAAG
1 AAAGAAAAGGAGAAAG
35466593 AAAG-AAAGGAGAAAG
1 AAAGAAAAGGAGAAAG
35466608 CAAGCCTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (16 bp):
AAAGAAAAGGAGAAAG
Found at i:35469253 original size:24 final size:23
Alignment explanation
Indices: 35469215--35469261 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
35469205 TAATGCTCTT
*
35469215 AATATTTTACAAAAATATTATATA
1 AATATTTTACAAAAA-AATATATA
**
35469239 AATATTTTAGTAAAAAATATATA
1 AATATTTTACAAAAAAATATATA
35469262 CTACAATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (23 bp):
AATATTTTACAAAAAAATATATA
Found at i:35473067 original size:8 final size:8
Alignment explanation
Indices: 35473054--35473079 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
35473044 TTAATTATAT
35473054 TATAAAAG
1 TATAAAAG
35473062 TATAAAAG
1 TATAAAAG
35473070 TATAAAAG
1 TATAAAAG
35473078 TA
1 TA
35473080 AAGTTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.27
Consensus pattern (8 bp):
TATAAAAG
Found at i:35478064 original size:26 final size:26
Alignment explanation
Indices: 35478035--35478225 Score: 240
Period size: 26 Copynumber: 7.3 Consensus size: 26
35478025 GTGTTGGTCG
35478035 AAATACCCTCGATGGGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTACCA
*
35478061 AAATACCCTCGATGGGTAAATTATCA
1 AAATACCCTCGATGGGTAAATTACCA
* * *
35478087 AAATACCCTCAATGGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTACCA
* *
35478113 AAATACCATCGATGAGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTACCA
** **
35478139 AAATACCCTTAATGGGTAAATTATTA
1 AAATACCCTCGATGGGTAAATTACCA
35478165 AAATACCCTCGATGGGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTACCA
* * *
35478191 AAATACCCCCG-TAGGGAAAAATTACTA
1 AAATACCCTCGAT-GGG-TAAATTACCA
35478218 AAATACCC
1 AAATACCC
35478226 CTAGAAGGGT
Statistics
Matches: 142, Mismatches: 21, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
25 1 0.01
26 125 0.88
27 16 0.11
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (26 bp):
AAATACCCTCGATGGGTAAATTACCA
Found at i:35478620 original size:28 final size:28
Alignment explanation
Indices: 35478588--35478671 Score: 69
Period size: 33 Copynumber: 2.8 Consensus size: 28
35478578 TAACAGGCTT
35478588 AGGCCCACACTGTTATTATATTGGACTA
1 AGGCCCACACTGTTATTATATTGGACTA
** *
35478616 AGGCCCGTATTGTTCTGTTATTATATTGGGCTA
1 AGGCCC--A---CACTGTTATTATATTGGACTA
* * *
35478649 AGGCCCGCACTGTTCTGATATTG
1 AGGCCCACACTGTTATTATATTG
35478672 TATTTGGCTA
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
28 18 0.42
30 1 0.02
33 24 0.56
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.36
Consensus pattern (28 bp):
AGGCCCACACTGTTATTATATTGGACTA
Found at i:35478639 original size:33 final size:32
Alignment explanation
Indices: 35478597--35478692 Score: 120
Period size: 33 Copynumber: 2.9 Consensus size: 32
35478587 TAGGCCCACA
* *
35478597 CTGTTATTATATTGGACTAAGGCCCGTATTGTT
1 CTGTTATTATATTGG-CTAAGGCCCGCACTGTT
35478630 CTGTTATTATATTGGGCTAAGGCCCGCACTGTT
1 CTGTTATTATATT-GGCTAAGGCCCGCACTGTT
* * *
35478663 CTGATATTGTATTTGGCTAAGGCCCACACT
1 CTGTTATTATA-TTGGCTAAGGCCCGCACT
35478693 AATACTAAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
33 52 0.93
34 4 0.07
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.38
Consensus pattern (32 bp):
CTGTTATTATATTGGCTAAGGCCCGCACTGTT
Found at i:35483398 original size:18 final size:18
Alignment explanation
Indices: 35483375--35483410 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
35483365 AAATTTTATT
*
35483375 TATTTTTCTTGGAATCTA
1 TATTTTCCTTGGAATCTA
35483393 TATTTTCCTTGGAATCTA
1 TATTTTCCTTGGAATCTA
35483411 ACTTTCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.14, G:0.11, T:0.53
Consensus pattern (18 bp):
TATTTTCCTTGGAATCTA
Found at i:35483416 original size:17 final size:18
Alignment explanation
Indices: 35483382--35483417 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
35483372 ATTTATTTTT
*
35483382 CTTGGAATCTATATTTTC
1 CTTGGAATCTATACTTTC
35483400 CTTGGAATCTA-ACTTTC
1 CTTGGAATCTATACTTTC
35483417 C
1 C
35483418 CTTGAAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (18 bp):
CTTGGAATCTATACTTTC
Found at i:35484193 original size:10 final size:10
Alignment explanation
Indices: 35484178--35484204 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
35484168 TTAAGTTAAA
35484178 ATTTATAACC
1 ATTTATAACC
35484188 ATTTATAACC
1 ATTTATAACC
35484198 ATTTATA
1 ATTTATA
35484205 TTTATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (10 bp):
ATTTATAACC
Found at i:35484787 original size:8 final size:8
Alignment explanation
Indices: 35484774--35484799 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
35484764 CATATGGCTA
35484774 ATTTAGGG
1 ATTTAGGG
35484782 ATTTAGGG
1 ATTTAGGG
35484790 ATTTAGGG
1 ATTTAGGG
35484798 AT
1 AT
35484800 CCCACATCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.35, T:0.38
Consensus pattern (8 bp):
ATTTAGGG
Found at i:35486632 original size:12 final size:13
Alignment explanation
Indices: 35486617--35486649 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
35486607 TTTTGCTTTC
35486617 AATTAAAAT-ATA
1 AATTAAAATGATA
35486629 AATTAAAATGATA
1 AATTAAAATGATA
*
35486642 ATTTAAAA
1 AATTAAAA
35486650 ATTTATCAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (13 bp):
AATTAAAATGATA
Found at i:35487692 original size:40 final size:42
Alignment explanation
Indices: 35487599--35487708 Score: 129
Period size: 40 Copynumber: 2.7 Consensus size: 42
35487589 GATACGTAGA
* **
35487599 AAAAT-GCTTCCAGCT-GGAAGCTCTTTTTGCCATTTTTCAGC
1 AAAATCGCTTCCAG-TAGGAAGCTCTTTTCGCCATAGTTCAGC
*
35487640 AAAAGCGCTTCCAGTAGGAAGCTCTTTTCGCCA-AGTT-AGC
1 AAAATCGCTTCCAGTAGGAAGCTCTTTTCGCCATAGTTCAGC
* *
35487680 AAAATCGCTTCCACTAGGAAGTTCTTTTC
1 AAAATCGCTTCCAGTAGGAAGCTCTTTTC
35487709 CTCTAACTGT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
40 29 0.48
41 7 0.12
42 24 0.40
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (42 bp):
AAAATCGCTTCCAGTAGGAAGCTCTTTTCGCCATAGTTCAGC
Found at i:35490160 original size:19 final size:20
Alignment explanation
Indices: 35490127--35490165 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
35490117 TAGTTTAGTT
* *
35490127 ATTTTTTTATCTTTTTATTA
1 ATTTTTTAATCTTTTAATTA
35490147 ATTTTTTAAT-TTTTAATTA
1 ATTTTTTAATCTTTTAATTA
35490166 TTCATTTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (20 bp):
ATTTTTTAATCTTTTAATTA
Done.