Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 120 of 205
Found at i:36039564 original size:51 final size:51
Alignment explanation
Indices: 36039508--36039609 Score: 186
Period size: 51 Copynumber: 2.0 Consensus size: 51
36039498 TACAGCTCTT
*
36039508 TTAAATAGGGATTTGAGAGAAATTTGAAAGGAAATTGAGAGCAAATTGAGA
1 TTAAATAGGGATTTGAGAGAAATTTGAAAGCAAATTGAGAGCAAATTGAGA
*
36039559 TTAAATAGGGATTTGAGAGAAATTTGAAAGCAAATTGAGAGGAAATTGAGA
1 TTAAATAGGGATTTGAGAGAAATTTGAAAGCAAATTGAGAGCAAATTGAGA
36039610 GGAAATTGAG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.45, C:0.02, G:0.27, T:0.25
Consensus pattern (51 bp):
TTAAATAGGGATTTGAGAGAAATTTGAAAGCAAATTGAGAGCAAATTGAGA
Found at i:36040048 original size:9 final size:9
Alignment explanation
Indices: 36040034--36040093 Score: 61
Period size: 9 Copynumber: 6.6 Consensus size: 9
36040024 TAAAAATTTT
36040034 ATTTTTATA
1 ATTTTTATA
36040043 ATTTTTTTATA
1 A--TTTTTATA
*
36040054 ATTTTTATG
1 ATTTTTATA
*
36040063 ATTTTTATG
1 ATTTTTATA
36040072 ATTTTTA-A
1 ATTTTTATA
36040080 TATTTTTA-A
1 -ATTTTTATA
36040089 ATTTT
1 ATTTT
36040094 AAAAGCGTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
8 5 0.11
9 32 0.70
11 9 0.20
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (9 bp):
ATTTTTATA
Found at i:36040051 original size:11 final size:11
Alignment explanation
Indices: 36040035--36040059 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
36040025 AAAAATTTTA
36040035 TTTTTATAATT
1 TTTTTATAATT
36040046 TTTTTATAATT
1 TTTTTATAATT
36040057 TTT
1 TTT
36040060 ATGATTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTTATAATT
Found at i:36055303 original size:62 final size:62
Alignment explanation
Indices: 36055227--36055353 Score: 236
Period size: 62 Copynumber: 2.0 Consensus size: 62
36055217 TATTCTAAAT
*
36055227 TTTAATTACTATCTTATCTATGATGTTTCCTACAAAGTTCAAAATTATGGGGTATGGGTCGA
1 TTTAATTACTATCTTATCTATGATGTTTCCTACAAAGTTCAAAATTATAGGGTATGGGTCGA
*
36055289 TTTAATTATTATCTTATCTATGATGTTTCCTACAAAGTTCAAAATTATAGGGTATGGGTCGA
1 TTTAATTACTATCTTATCTATGATGTTTCCTACAAAGTTCAAAATTATAGGGTATGGGTCGA
36055351 TTT
1 TTT
36055354 CACTTTACAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.43
Consensus pattern (62 bp):
TTTAATTACTATCTTATCTATGATGTTTCCTACAAAGTTCAAAATTATAGGGTATGGGTCGA
Found at i:36056351 original size:23 final size:23
Alignment explanation
Indices: 36056317--36056360 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
36056307 AAGTATGTAT
36056317 ATATATTAATTACAAATGTATAC
1 ATATATTAATTACAAATGTATAC
* *
36056340 ATATATTTATTACACATGTAT
1 ATATATTAATTACAAATGTAT
36056361 TTATAATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.43, C:0.09, G:0.05, T:0.43
Consensus pattern (23 bp):
ATATATTAATTACAAATGTATAC
Found at i:36060654 original size:90 final size:90
Alignment explanation
Indices: 36060501--36060679 Score: 295
Period size: 90 Copynumber: 2.0 Consensus size: 90
36060491 AGAAAGTGTA
* * * *
36060501 GGATACTTTGGAGGATAAATTTTTGAAAAGGAAGTTTTAGATCCGAGTGCAACAAAAGGAACTCT
1 GGATACTTCGGAAGATAAATTTTTGAAAAGGAAGTTTGAGATCCAAGTGCAACAAAAGGAACTCT
36060566 TTTTGAACTTTGACCATAAGAGGTG
66 TTTTGAACTTTGACCATAAGAGGTG
* * *
36060591 GGATACTTCGGAAGATAAATTTTTGGAGAGGAAGTTTGAGATCCAAGTTCAACAAAAGGAACTCT
1 GGATACTTCGGAAGATAAATTTTTGAAAAGGAAGTTTGAGATCCAAGTGCAACAAAAGGAACTCT
36060656 TTTTGAACTTTGACCATAAGAGGT
66 TTTTGAACTTTGACCATAAGAGGT
36060680 ATTGGAAAAT
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 82 1.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.30
Consensus pattern (90 bp):
GGATACTTCGGAAGATAAATTTTTGAAAAGGAAGTTTGAGATCCAAGTGCAACAAAAGGAACTCT
TTTTGAACTTTGACCATAAGAGGTG
Found at i:36061311 original size:19 final size:19
Alignment explanation
Indices: 36061287--36061324 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
36061277 TGTCGTTTGT
36061287 TTGCTCATATTCCTCGCGA
1 TTGCTCATATTCCTCGCGA
36061306 TTGCTCATATTCCTCGCGA
1 TTGCTCATATTCCTCGCGA
36061325 GGGTAATACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.37
Consensus pattern (19 bp):
TTGCTCATATTCCTCGCGA
Found at i:36076910 original size:137 final size:137
Alignment explanation
Indices: 36076664--36076940 Score: 527
Period size: 137 Copynumber: 2.0 Consensus size: 137
36076654 GGTTTGTATT
*
36076664 GATGCAGGATGGTAACTCATCAGCTCAAAACTAGTGAAGTGAACTATCCAATGCACAATTTGGAG
1 GATGCAGGATGGTAACTCATCAGCTCAAAACTAGTGAAGTGAACTATCCAATGCACAATTTAGAG
36076729 TTGGTCGCCGTAGTCTTTACATTAAAAATTTGGAGGCATTATCAGTACGGTGAGAAGTGTATTAT
66 TTGGTCGCCGTAGTCTTTACATTAAAAATTTGGAGGCATTATCAGTACGGTGAGAAGTGTATTAT
36076794 CTACACC
131 CTACACC
* *
36076801 GATGCAGGATGGTAACTCGTCAGCTCAAAACTAGTGAAGTGAACTATCCGATGCACAATTTAGAG
1 GATGCAGGATGGTAACTCATCAGCTCAAAACTAGTGAAGTGAACTATCCAATGCACAATTTAGAG
36076866 TTGGTCGCCGTAGTCTTTACATTAAAAATTTGGAGGCATTATCAGTACGGTGAGAAGTGTATTAT
66 TTGGTCGCCGTAGTCTTTACATTAAAAATTTGGAGGCATTATCAGTACGGTGAGAAGTGTATTAT
36076931 CTACACC
131 CTACACC
36076938 GAT
1 GAT
36076941 CATAAAAGCC
Statistics
Matches: 137, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 137 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (137 bp):
GATGCAGGATGGTAACTCATCAGCTCAAAACTAGTGAAGTGAACTATCCAATGCACAATTTAGAG
TTGGTCGCCGTAGTCTTTACATTAAAAATTTGGAGGCATTATCAGTACGGTGAGAAGTGTATTAT
CTACACC
Found at i:36081482 original size:101 final size:99
Alignment explanation
Indices: 36081379--36081716 Score: 316
Period size: 101 Copynumber: 3.4 Consensus size: 99
36081369 GGTGGAGCTA
*
36081379 AAAATATCA-TTTTTAAAATTTTTAGATTAAAAAAAACGACACATTTAAAAAA-AATCCATGCAG
1 AAAATATCATTTTTTAAAATTTTTAAATTAAAAAAAA--ACACATTTAAAAAACAATCCAT-CAG
*
36081442 TACACTGGTGGCGCCATTCTATATGGCTCCACCAAAT
63 TAAACTGGTGGCGCCATTCTATATGGCTCCACCAAAT
* * * *
36081479 AAAATATTATTTTTTAAAA-TTTTAAAATAAAAAAATAACACATTTAAAAATATACTATACAT-A
1 AAAATATCATTTTTTAAAATTTTTAAATTAAAAAAA-AACACATTT-AAAA-A-ACAATCCATCA
* * * **
36081542 GTATACTGGTGGCGTCATTCTATATGGATCTGCCAAAT
62 GTAAACTGGTGGCGCCATTCTATATGGCTCCACCAAAT
** * *
36081580 AAAATATTGTTTTTTTAAAATTTTTAAATT-TAAAAAAACACATTTAAAAAACAATCC-TACTAA
1 AAAATA-TCATTTTTTAAAATTTTTAAATTAAAAAAAAACACATTTAAAAAACAATCCAT-C-AG
* *
36081643 TAAAATGGTGGCGCCATT-TAGAATGGCTCCACC-AAT
63 TAAACTGGTGGCGCCATTCTA-TATGGCTCCACCAAAT
* * * *
36081679 AAGAA-AACATTTTTTATAGTTTTAAAATTAAAAAAAAA
1 AA-AATATCATTTTTTAAAATTTTTAAATTAAAAAAAAA
36081717 ATAACATTAA
Statistics
Matches: 193, Mismatches: 31, Indels: 29
0.76 0.12 0.11
Matches are distributed among these distances:
97 1 0.01
98 22 0.11
99 24 0.12
100 56 0.29
101 60 0.31
102 17 0.09
103 13 0.07
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (99 bp):
AAAATATCATTTTTTAAAATTTTTAAATTAAAAAAAAACACATTTAAAAAACAATCCATCAGTAA
ACTGGTGGCGCCATTCTATATGGCTCCACCAAAT
Found at i:36083552 original size:83 final size:83
Alignment explanation
Indices: 36083413--36083575 Score: 290
Period size: 83 Copynumber: 2.0 Consensus size: 83
36083403 TATAGTTGTA
* * *
36083413 CCTCTTAAAAATGTCTTATCTAAGATTCAAACTCACATTTATCCAAACTTATTTTGGGCCTAATA
1 CCTCTTAAAAATGTCGTATCCAAGATTCAAACACACATTTATCCAAACTTATTTTGGGCCTAATA
36083478 TTATTATCTAAACATGTC
66 TTATTATCTAAACATGTC
*
36083496 CCTCTTAAAAATGTCGTCTCCAAGATTCAAACACACATTTATCCAAACTTATTTTGGGCCTAATA
1 CCTCTTAAAAATGTCGTATCCAAGATTCAAACACACATTTATCCAAACTTATTTTGGGCCTAATA
36083561 TTATTATCTAAACAT
66 TTATTATCTAAACAT
36083576 TCCAAATTTC
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
83 76 1.00
ACGTcount: A:0.34, C:0.21, G:0.07, T:0.37
Consensus pattern (83 bp):
CCTCTTAAAAATGTCGTATCCAAGATTCAAACACACATTTATCCAAACTTATTTTGGGCCTAATA
TTATTATCTAAACATGTC
Found at i:36085606 original size:21 final size:22
Alignment explanation
Indices: 36085580--36085621 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
36085570 ATTAGTAAGT
36085580 ATGTAT-ATATATTAATTACAA
1 ATGTATAATATATTAATTACAA
*
36085601 ATGTATACATATATTTATTAC
1 ATGTATA-ATATATTAATTAC
36085622 GCATGTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
23 12 0.67
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (22 bp):
ATGTATAATATATTAATTACAA
Found at i:36085741 original size:23 final size:22
Alignment explanation
Indices: 36085715--36085761 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
36085705 ATAAACTTTC
*
36085715 ACACTTAATTCAA-TTTAATTCTA
1 ACACTCAA-TCAACTTTAATT-TA
36085738 ACACTCAATCAACTTTAATTTA
1 ACACTCAATCAACTTTAATTTA
36085760 AC
1 AC
36085762 TAAATTCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.40, C:0.21, G:0.00, T:0.38
Consensus pattern (22 bp):
ACACTCAATCAACTTTAATTTA
Found at i:36087086 original size:9 final size:9
Alignment explanation
Indices: 36087060--36087110 Score: 52
Period size: 9 Copynumber: 5.6 Consensus size: 9
36087050 CAAAAAATTT
36087060 ATTTTTATA
1 ATTTTTATA
36087069 ATTTGTTTATA
1 A-TT-TTTATA
*
36087080 ATTTTTATG
1 ATTTTTATA
36087089 ATTTTTA-A
1 ATTTTTATA
36087097 TATTTTTA-A
1 -ATTTTTATA
36087106 ATTTT
1 ATTTT
36087111 AAAAGTATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
8 5 0.14
9 21 0.57
10 4 0.11
11 7 0.19
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (9 bp):
ATTTTTATA
Found at i:36087101 original size:18 final size:19
Alignment explanation
Indices: 36087059--36087109 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
36087049 ACAAAAAATT
*
36087059 TATTTTTATAATTTGTTTA
1 TATTTTTATAATTTGTTAA
*
36087078 TAATTTTTATGATTT-TTAA
1 T-ATTTTTATAATTTGTTAA
36087097 TATTTTTA-AATTT
1 TATTTTTATAATTT
36087110 TAAAAGTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 4 0.14
18 7 0.25
19 5 0.18
20 12 0.43
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (19 bp):
TATTTTTATAATTTGTTAA
Found at i:36094391 original size:25 final size:25
Alignment explanation
Indices: 36094362--36094453 Score: 75
Period size: 25 Copynumber: 3.8 Consensus size: 25
36094352 CCTTAGCGCA
36094362 CTCTCTGATTAATAGCACATTAGTG
1 CTCTCTGATTAATAGCACATTAGTG
* * *
36094387 CTCTCCGATTATTAGCACATTTA-TA
1 CTCTCTGATTAATAGCACA-TTAGTG
* *
36094412 CTCTCTG--T-ATAACACTTTAGTG
1 CTCTCTGATTAATAGCACATTAGTG
* * *
36094434 TTCTCTGTTTAATAGTACAT
1 CTCTCTGATTAATAGCACAT
36094454 AAAAATACAC
Statistics
Matches: 50, Mismatches: 12, Indels: 10
0.69 0.17 0.14
Matches are distributed among these distances:
21 3 0.06
22 12 0.24
23 1 0.02
24 1 0.02
25 30 0.60
26 3 0.06
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.41
Consensus pattern (25 bp):
CTCTCTGATTAATAGCACATTAGTG
Found at i:36097715 original size:17 final size:18
Alignment explanation
Indices: 36097687--36097721 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
36097677 GAATTGTAAA
36097687 TATTGAGAAATAAATTAT
1 TATTGAGAAATAAATTAT
*
36097705 TATTG-GAAATATATTAT
1 TATTGAGAAATAAATTAT
36097722 CGAATTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (18 bp):
TATTGAGAAATAAATTAT
Found at i:36110133 original size:21 final size:22
Alignment explanation
Indices: 36110098--36110142 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
36110088 AGCTCTCATA
*
36110098 AATTTTTAGAAAATTATA-AATT
1 AATTGTTAGAAAATT-TAGAATT
36110120 AATTGTTA-AAAATTTAGAATT
1 AATTGTTAGAAAATTTAGAATT
36110141 AA
1 AA
36110143 AATTTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 2 0.10
21 12 0.57
22 7 0.33
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (22 bp):
AATTGTTAGAAAATTTAGAATT
Found at i:36110278 original size:9 final size:9
Alignment explanation
Indices: 36110264--36110316 Score: 56
Period size: 9 Copynumber: 5.8 Consensus size: 9
36110254 ATAAAAAAAT
36110264 TAATTTTTA
1 TAATTTTTA
36110273 TAATTTGTTTA
1 TAA-TT-TTTA
36110284 TAATTTTTA
1 TAATTTTTA
*
36110293 TGATTTTTA
1 TAATTTTTA
36110302 -ATATTTTTA
1 TA-ATTTTTA
36110311 -AATTTT
1 TAATTTT
36110317 AAAAGTGTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
8 5 0.13
9 23 0.59
10 4 0.10
11 7 0.18
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (9 bp):
TAATTTTTA
Found at i:36110307 original size:18 final size:20
Alignment explanation
Indices: 36110264--36110315 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
36110254 ATAAAAAAAT
*
36110264 TAATTTTTATAATTTGTTTA
1 TAATTTTTATAATTTGTTAA
*
36110284 TAATTTTTATGATTT-TTAA
1 TAATTTTTATAATTTGTTAA
36110303 T-ATTTTTA-AATTT
1 TAATTTTTATAATTT
36110316 TAAAAGTGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 4 0.14
18 7 0.24
19 4 0.14
20 14 0.48
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (20 bp):
TAATTTTTATAATTTGTTAA
Found at i:36110884 original size:31 final size:31
Alignment explanation
Indices: 36110846--36110909 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
36110836 TCACGTAAAA
*
36110846 ATATATGGTACACTATTTTTAGAAAAAGTAT
1 ATATATGGTACACTATTTTTAGAAAAAATAT
36110877 ATATATGGTACACTATTTTTAGAAAAAATAT
1 ATATATGGTACACTATTTTTAGAAAAAATAT
36110908 AT
1 AT
36110910 GATAATTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.39
Consensus pattern (31 bp):
ATATATGGTACACTATTTTTAGAAAAAATAT
Found at i:36114376 original size:23 final size:23
Alignment explanation
Indices: 36114350--36114396 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
36114340 AATGATTTTT
*
36114350 ATTTTTTTAAAAAATTAAAAATA
1 ATTTTTATAAAAAATTAAAAATA
*
36114373 ATTTTTATATAAAATTAAAAATA
1 ATTTTTATAAAAAATTAAAAATA
36114396 A
1 A
36114397 AAGAGCATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
ATTTTTATAAAAAATTAAAAATA
Found at i:36123031 original size:22 final size:22
Alignment explanation
Indices: 36123003--36123079 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 22
36122993 TTTCTTTTAA
36123003 TTAGGAGATTAGATGCTAAAGT
1 TTAGGAGATTAGATGCTAAAGT
* * *
36123025 TTAGGAGATAATAGTTTGGTTCAA--
1 TTAGGAGAT--TAG-AT-GCTAAAGT
36123049 TTAGGAGATTAGATGCTAAAGT
1 TTAGGAGATTAGATGCTAAAGT
36123071 TTAGGAGAT
1 TTAGGAGAT
36123080 AATATTTGGT
Statistics
Matches: 43, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
20 4 0.09
21 1 0.02
22 21 0.49
24 12 0.28
25 1 0.02
26 4 0.09
ACGTcount: A:0.35, C:0.04, G:0.27, T:0.34
Consensus pattern (22 bp):
TTAGGAGATTAGATGCTAAAGT
Found at i:36123054 original size:46 final size:45
Alignment explanation
Indices: 36123001--36123090 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 45
36122991 CTTTTCTTTT
36123001 AATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATAGTTTGGTTC
1 AATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATA-TTTGGTTC
36123047 AATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTGGTT
1 AATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTGGTT
36123091 TCTATCTTTG
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 7 0.16
46 37 0.84
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.36
Consensus pattern (45 bp):
AATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTGGTTC
Found at i:36130612 original size:12 final size:13
Alignment explanation
Indices: 36130595--36130654 Score: 50
Period size: 15 Copynumber: 4.3 Consensus size: 13
36130585 AAGTAAAACC
36130595 TAATGT-ATATAA
1 TAATGTAATATAA
36130607 TAATGTACATATAA
1 TAATGTA-ATATAA
*
36130621 TAATAATAATAATAA
1 TAAT-GTAAT-ATAA
*
36130636 TAATAATAATAATAA
1 TAAT-GTAAT-ATAA
36130651 TAAT
1 TAAT
36130655 AATAACCAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
12 6 0.14
14 12 0.28
15 25 0.58
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (13 bp):
TAATGTAATATAA
Found at i:36130623 original size:3 final size:3
Alignment explanation
Indices: 36130617--36130659 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
36130607 TAATGTACAT
36130617 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
36130660 CCAATTAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:36132487 original size:44 final size:44
Alignment explanation
Indices: 36132439--36132682 Score: 127
Period size: 44 Copynumber: 5.6 Consensus size: 44
36132429 TATCTTTGGA
**
36132439 AGATAAGATTTGCCATCTTCAATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTAATCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * * * * * *
36132483 AGATAAGATCTATAATTTTCAACCTACTCTATTGCTACTCAGGG
1 AGATAAGATTTGTAATCTTCAATCTGCTCCACTACTGCTTAGGG
** * * *
36132527 AGATAAGGCTAGTGA-CTTAAATCTGCTTCC-CTACTGCCTT-GGG
1 AGATAAGATTTGTAATCTTCAATCTGC-TCCACTACTG-CTTAGGG
* ***** **
36132570 AAGATAAAATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 -AGATAAGATTTGTAATCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
36132615 AGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGGTTAGGG
1 AGATAAGATTTGTAATCTTCAATCTGCTCCACTACTGCTTAGGG
* * *
36132659 AGATAAGGTTGGT-ATCTTCGATCT
1 AGATAAGATTTGTAATCTTCAATCT
36132683 ACTTCGCTAC
Statistics
Matches: 137, Mismatches: 57, Indels: 13
0.66 0.28 0.06
Matches are distributed among these distances:
43 21 0.15
44 98 0.72
45 18 0.13
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (44 bp):
AGATAAGATTTGTAATCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:36132546 original size:132 final size:132
Alignment explanation
Indices: 36132355--36132666 Score: 435
Period size: 132 Copynumber: 2.4 Consensus size: 132
36132345 ACAGGAACAC
* * * * *
36132355 AAGATCTACAATCTTCGACCTACTCTACTGTTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTA
1 AAGATCTATAATTTTCAACCTACTCTACTGCTGCTCAGGGAGATAAGGCTAGTGACTTAAATCTA
* * * **
36132420 CTTCCCTACTATCTTTGGAAGATAAGATTTGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAG
66 CTTCCCTACTACCTTGGGAAGATAAAATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGGAG
36132485 AT
131 AT
* * *
36132487 AAGATCTATAATTTTCAACCTACTCTATTGCTACTCAGGGAGATAAGGCTAGTGACTTAAATCTG
1 AAGATCTATAATTTTCAACCTACTCTACTGCTGCTCAGGGAGATAAGGCTAGTGACTTAAATCTA
* * **
36132552 CTTCCCTACTGCCTTGGGAAGATAAAATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAG
66 CTTCCCTACTACCTTGGGAAGATAAAATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGGAG
36132617 AT
131 AT
* * * *
36132619 AAGATCTGTAATTTTCAACCTACTCCACTGCTGGTTAGGGAGATAAGG
1 AAGATCTATAATTTTCAACCTACTCTACTGCTGCTCAGGGAGATAAGG
36132667 TTGGTATCTT
Statistics
Matches: 157, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
132 157 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (132 bp):
AAGATCTATAATTTTCAACCTACTCTACTGCTGCTCAGGGAGATAAGGCTAGTGACTTAAATCTA
CTTCCCTACTACCTTGGGAAGATAAAATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGGAG
AT
Found at i:36132722 original size:132 final size:130
Alignment explanation
Indices: 36132355--36132753 Score: 388
Period size: 132 Copynumber: 3.0 Consensus size: 130
36132345 ACAGGAACAC
* * * * * * *
36132355 AAGATCTACAATCTTCGACCTACTCTACTGTTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTA
1 AAGATCTATAATTTTCAACCTACTCCACTGCTACTCAGGGAGATAAGGCTAGTGACTTAAATCTA
* ** *
36132420 CTTCCCTACTATCTTTGGAAGATAAGATTTGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAG
66 CTTCCCTACT-GCTCAGGAAGATAAGA-TTGCCATCTTTAATCTGCTCCACTACTGCTTAGGGAG
36132485 AT
129 AT
* * *
36132487 AAGATCTATAATTTTCAACCTACTCTATTGCTACTCAGGGAGATAAGGCTAGTGACTTAAATCTG
1 AAGATCTATAATTTTCAACCTACTCCACTGCTACTCAGGGAGATAAGGCTAGTGACTTAAATCTA
** * * * *
36132552 CTTCCCTACTGCCTTGGGAAGATAAAATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAG
66 CTTCCCTACTG-CTCAGGAAGATAAGATT-GCCATCTTTAATCTGCTCCACTACTGCTTAGGGAG
36132617 AT
129 AT
* ** * * * **
36132619 AAGATCTGTAATTTTCAACCTACTCCACTGCTGGTTAGGGAGATAAGGTTGGT-ATCTTCGATCT
1 AAGATCTATAATTTTCAACCTACTCCACTGCTACTCAGGGAGATAAGGCTAGTGA-CTTAAATCT
* * * * ** * *
36132683 ACTTCGCTACTAG-TACAGGAAGACAAGATCTGCTATCTTTAACCTATTCCACTGCTGCTCAGGG
65 ACTTCCCTACT-GCT-CAGGAAGATAAGAT-TGCCATCTTTAATCTGCTCCACTACTGCTTAGGG
36132747 AGAT
127 AGAT
36132751 AAG
1 AAG
36132754 GCTGGTTATC
Statistics
Matches: 221, Mismatches: 40, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
131 4 0.02
132 215 0.97
133 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (130 bp):
AAGATCTATAATTTTCAACCTACTCCACTGCTACTCAGGGAGATAAGGCTAGTGACTTAAATCTA
CTTCCCTACTGCTCAGGAAGATAAGATTGCCATCTTTAATCTGCTCCACTACTGCTTAGGGAGAT
Found at i:36134063 original size:10 final size:10
Alignment explanation
Indices: 36134036--36134070 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
36134026 CTCCATTTTC
36134036 TTTTTTATTT
1 TTTTTTATTT
*
36134046 TTGGTTTATTT
1 TT-TTTTATTT
36134057 TTTTTTATTT
1 TTTTTTATTT
36134067 TTTT
1 TTTT
36134071 GGACTCAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.09, C:0.00, G:0.06, T:0.86
Consensus pattern (10 bp):
TTTTTTATTT
Found at i:36134127 original size:47 final size:48
Alignment explanation
Indices: 36134058--36134150 Score: 143
Period size: 47 Copynumber: 2.0 Consensus size: 48
36134048 GGTTTATTTT
* * * *
36134058 TTTTTATTTTTTTGGACTCAAAGTGCCCTTTGTGGGTTTTCACCTTAG
1 TTTTTATTTTTTAGGAATCAAAGCGCCCTTTGCGGGTTTTCACCTTAG
36134106 TTTTT-TTTTTTAGGAATCAAAGCGCCCTTTGCGGGTTTTCACCTT
1 TTTTTATTTTTTAGGAATCAAAGCGCCCTTTGCGGGTTTTCACCTT
36134151 GGTCCCTTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 36 0.88
48 5 0.12
ACGTcount: A:0.15, C:0.18, G:0.18, T:0.48
Consensus pattern (48 bp):
TTTTTATTTTTTAGGAATCAAAGCGCCCTTTGCGGGTTTTCACCTTAG
Found at i:36143094 original size:39 final size:40
Alignment explanation
Indices: 36142994--36143178 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 40
36142984 TCGAATGATG
* * *
36142994 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * * *
36143033 ATCCGGACAAAGAT-CTGAAGGCATTTGTGTGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
36143074 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
36143113 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
36143152 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
36143179 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 34 0.29
40 76 0.64
41 9 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:36143200 original size:79 final size:79
Alignment explanation
Indices: 36143049--36143201 Score: 186
Period size: 79 Copynumber: 1.9 Consensus size: 79
36143039 ACAAAGATCT
** * **
36143049 GAAGGCATTTGTGTGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
36143114 CCGGGTTAAGTCCC
66 CCGGGTTAAGTCCC
* *
36143128 GAAGGCATTTGTGCAAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCAAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTA
*
36143191 TATCC-GGTTAA
63 AATCCGGGTTAA
36143202 ATTTCGAAGG
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 37 0.59
80 24 0.38
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
GAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
CCGGGTTAAGTCCC
Found at i:36151314 original size:79 final size:81
Alignment explanation
Indices: 36151178--36151360 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
36151168 TCGAATGATG
* *
36151178 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
36151242 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
36151257 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
36151319 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
36151337 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
36151361 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:36151376 original size:40 final size:40
Alignment explanation
Indices: 36151179--36151362 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
36151169 CGAATGATGT
* * * *
36151179 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
36151219 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
36151259 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36151297 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36151338 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36151363 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36151384 original size:79 final size:79
Alignment explanation
Indices: 36151231--36151395 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
36151221 GGACTAAGAT
* **
36151231 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
36151296 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
36151310 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
36151373 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36151389 CCGAAGG
1 CCGAAGG
36151396 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36157571 original size:192 final size:192
Alignment explanation
Indices: 36157244--36157627 Score: 671
Period size: 192 Copynumber: 2.0 Consensus size: 192
36157234 AACAATATAA
*
36157244 AATACAGATGGACCTGTTGCGCAAATGGACCATTGAGACAAAACGCGCGGATTCTTCCCTCAGAT
1 AATACAGATGGACCTGTTGCGCAAATGGACCATTGAGACAAAACGCGCGGATCCTTCCCTCAGAT
* *
36157309 TGGATCACCGCGCGGGTCTGAGCTCACTACGACGCCGTTTTGAGGTCAACTCAATCAGCCTAAAA
66 AGGATCACCACGCGGGTCTGAGCTCACTACGACGCCGTTTTGAGGTCAACTCAATCAGCCTAAAA
*
36157374 CGACACCGTTTCTCAACGTGTATAAATGCCATATTAAACCCTAATTAGTAACTTTTATCATT
131 CGACACCGTTTCTCAACGTATATAAATGCCATATTAAACCCTAATTAGTAACTTTTATCATT
*
36157436 AATACAGATGGACCTGTTGCGCAAATGGACCATTGAGACAAAACGCGCGGATCCTTCCCTCGGAT
1 AATACAGATGGACCTGTTGCGCAAATGGACCATTGAGACAAAACGCGCGGATCCTTCCCTCAGAT
* * * *
36157501 CAGG-TCACCACGCGGGTCTGAGCTCACTACGACGCCGTTTTGTGGTTACCTCAATCAGCCTCAA
66 -AGGATCACCACGCGGGTCTGAGCTCACTACGACGCCGTTTTGAGGTCAACTCAATCAGCCTAAA
36157565 ACGACACCGTTTCTCAACGTATATAAATGCCATATTAAACCCTAATTAGTAACTTTTATCATT
130 ACGACACCGTTTCTCAACGTATATAAATGCCATATTAAACCCTAATTAGTAACTTTTATCATT
36157628 TTTAAAACAA
Statistics
Matches: 182, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
192 180 0.99
193 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (192 bp):
AATACAGATGGACCTGTTGCGCAAATGGACCATTGAGACAAAACGCGCGGATCCTTCCCTCAGAT
AGGATCACCACGCGGGTCTGAGCTCACTACGACGCCGTTTTGAGGTCAACTCAATCAGCCTAAAA
CGACACCGTTTCTCAACGTATATAAATGCCATATTAAACCCTAATTAGTAACTTTTATCATT
Found at i:36158226 original size:16 final size:16
Alignment explanation
Indices: 36158157--36158224 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
36158147 TTTGGTTCGC
36158157 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
36158173 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
36158189 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
36158205 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
36158221 TGTA
1 TGTA
36158225 ATAGCAAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:36158259 original size:45 final size:44
Alignment explanation
Indices: 36158205--36158299 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
36158195 GGATTAGAGG
* *
36158205 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
36158250 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
36158294 TGTAAT
1 TGTAAT
36158300 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:36159747 original size:44 final size:44
Alignment explanation
Indices: 36159699--36159942 Score: 127
Period size: 44 Copynumber: 5.6 Consensus size: 44
36159689 TATCTTTGGA
**
36159699 AGATAAGATTTGCCATCTTCAATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTAATCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * * * * * *
36159743 AGATAAGATCTATAATTTTCAACCTACTCTATTGCTACTCAGGG
1 AGATAAGATTTGTAATCTTCAATCTGCTCCACTACTGCTTAGGG
** * * *
36159787 AGATAAGGCTAGTGA-CTTAAATCTGCTTCC-CTACTGCCTT-GGG
1 AGATAAGATTTGTAATCTTCAATCTGC-TCCACTACTG-CTTAGGG
* ***** **
36159830 AAGATAAAATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 -AGATAAGATTTGTAATCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
36159875 AGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGGTTAGGG
1 AGATAAGATTTGTAATCTTCAATCTGCTCCACTACTGCTTAGGG
* * *
36159919 AGATAAGGTTGGT-ATCTTCGATCT
1 AGATAAGATTTGTAATCTTCAATCT
36159943 ACTTCGCTAC
Statistics
Matches: 137, Mismatches: 57, Indels: 13
0.66 0.28 0.06
Matches are distributed among these distances:
43 21 0.15
44 98 0.72
45 18 0.13
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (44 bp):
AGATAAGATTTGTAATCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:36159806 original size:132 final size:132
Alignment explanation
Indices: 36159615--36159926 Score: 435
Period size: 132 Copynumber: 2.4 Consensus size: 132
36159605 ACAGGAACAC
* * * * *
36159615 AAGATCTACAATCTTCGACCTACTCTACTGTTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTA
1 AAGATCTATAATTTTCAACCTACTCTACTGCTGCTCAGGGAGATAAGGCTAGTGACTTAAATCTA
* * * **
36159680 CTTCCCTACTATCTTTGGAAGATAAGATTTGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAG
66 CTTCCCTACTACCTTGGGAAGATAAAATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGGAG
36159745 AT
131 AT
* * *
36159747 AAGATCTATAATTTTCAACCTACTCTATTGCTACTCAGGGAGATAAGGCTAGTGACTTAAATCTG
1 AAGATCTATAATTTTCAACCTACTCTACTGCTGCTCAGGGAGATAAGGCTAGTGACTTAAATCTA
* * **
36159812 CTTCCCTACTGCCTTGGGAAGATAAAATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAG
66 CTTCCCTACTACCTTGGGAAGATAAAATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGGAG
36159877 AT
131 AT
* * * *
36159879 AAGATCTGTAATTTTCAACCTACTCCACTGCTGGTTAGGGAGATAAGG
1 AAGATCTATAATTTTCAACCTACTCTACTGCTGCTCAGGGAGATAAGG
36159927 TTGGTATCTT
Statistics
Matches: 157, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
132 157 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (132 bp):
AAGATCTATAATTTTCAACCTACTCTACTGCTGCTCAGGGAGATAAGGCTAGTGACTTAAATCTA
CTTCCCTACTACCTTGGGAAGATAAAATTCACCATCTTCAATCTGCTCCACTACTGCTTAGGGAG
AT
Found at i:36159982 original size:132 final size:130
Alignment explanation
Indices: 36159615--36160013 Score: 388
Period size: 132 Copynumber: 3.0 Consensus size: 130
36159605 ACAGGAACAC
* * * * * * *
36159615 AAGATCTACAATCTTCGACCTACTCTACTGTTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTA
1 AAGATCTATAATTTTCAACCTACTCCACTGCTACTCAGGGAGATAAGGCTAGTGACTTAAATCTA
* ** *
36159680 CTTCCCTACTATCTTTGGAAGATAAGATTTGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAG
66 CTTCCCTACT-GCTCAGGAAGATAAGA-TTGCCATCTTTAATCTGCTCCACTACTGCTTAGGGAG
36159745 AT
129 AT
* * *
36159747 AAGATCTATAATTTTCAACCTACTCTATTGCTACTCAGGGAGATAAGGCTAGTGACTTAAATCTG
1 AAGATCTATAATTTTCAACCTACTCCACTGCTACTCAGGGAGATAAGGCTAGTGACTTAAATCTA
** * * * *
36159812 CTTCCCTACTGCCTTGGGAAGATAAAATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAG
66 CTTCCCTACTG-CTCAGGAAGATAAGATT-GCCATCTTTAATCTGCTCCACTACTGCTTAGGGAG
36159877 AT
129 AT
* ** * * * **
36159879 AAGATCTGTAATTTTCAACCTACTCCACTGCTGGTTAGGGAGATAAGGTTGGT-ATCTTCGATCT
1 AAGATCTATAATTTTCAACCTACTCCACTGCTACTCAGGGAGATAAGGCTAGTGA-CTTAAATCT
* * * * ** * *
36159943 ACTTCGCTACTAG-TACAGGAAGACAAGATCTGCTATCTTTAACCTATTCCACTGCTGCTCAGGG
65 ACTTCCCTACT-GCT-CAGGAAGATAAGAT-TGCCATCTTTAATCTGCTCCACTACTGCTTAGGG
36160007 AGAT
127 AGAT
36160011 AAG
1 AAG
36160014 GCTGGTTATC
Statistics
Matches: 221, Mismatches: 40, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
131 4 0.02
132 215 0.97
133 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (130 bp):
AAGATCTATAATTTTCAACCTACTCCACTGCTACTCAGGGAGATAAGGCTAGTGACTTAAATCTA
CTTCCCTACTGCTCAGGAAGATAAGATTGCCATCTTTAATCTGCTCCACTACTGCTTAGGGAGAT
Found at i:36161323 original size:10 final size:10
Alignment explanation
Indices: 36161296--36161330 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
36161286 CTCCATTTTC
36161296 TTTTTTATTT
1 TTTTTTATTT
*
36161306 TTGGTTTATTT
1 TT-TTTTATTT
36161317 TTTTTTATTT
1 TTTTTTATTT
36161327 TTTT
1 TTTT
36161331 GGACTCAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.09, C:0.00, G:0.06, T:0.86
Consensus pattern (10 bp):
TTTTTTATTT
Found at i:36161387 original size:47 final size:48
Alignment explanation
Indices: 36161318--36161410 Score: 143
Period size: 47 Copynumber: 2.0 Consensus size: 48
36161308 GGTTTATTTT
* * * *
36161318 TTTTTATTTTTTTGGACTCAAAGTGCCCTTTGTGGGTTTTCACCTTAG
1 TTTTTATTTTTTAGGAATCAAAGCGCCCTTTGCGGGTTTTCACCTTAG
36161366 TTTTT-TTTTTTAGGAATCAAAGCGCCCTTTGCGGGTTTTCACCTT
1 TTTTTATTTTTTAGGAATCAAAGCGCCCTTTGCGGGTTTTCACCTT
36161411 GGTCCCTTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 36 0.88
48 5 0.12
ACGTcount: A:0.15, C:0.18, G:0.18, T:0.48
Consensus pattern (48 bp):
TTTTTATTTTTTAGGAATCAAAGCGCCCTTTGCGGGTTTTCACCTTAG
Found at i:36177337 original size:23 final size:23
Alignment explanation
Indices: 36177311--36177363 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
36177301 ATAAGTGCCA
36177311 CACTGATACGTAGCCGAAGCTAC
1 CACTGATACGTAGCCGAAGCTAC
*
36177334 CACTGATACGTAGCCGTAGCTAC
1 CACTGATACGTAGCCGAAGCTAC
*
36177357 TACTGAT
1 CACTGAT
36177364 CAATAACACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (23 bp):
CACTGATACGTAGCCGAAGCTAC
Found at i:36180725 original size:49 final size:50
Alignment explanation
Indices: 36180671--36180811 Score: 232
Period size: 49 Copynumber: 2.9 Consensus size: 50
36180661 TAATAAGTGA
*
36180671 TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGT
1 TATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGAGTATATGT
*
36180720 TATGTGATTACGTGTAAGACCATAGCTGGGCTATGACATC-AGTATATGT
1 TATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGAGTATATGT
* *
36180769 TATGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCGAG
1 TATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGAG
36180812 AAAATAAGTA
Statistics
Matches: 85, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
48 1 0.01
49 82 0.96
50 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (50 bp):
TATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGAGTATATGT
Found at i:36183117 original size:30 final size:30
Alignment explanation
Indices: 36183068--36183353 Score: 321
Period size: 30 Copynumber: 9.6 Consensus size: 30
36183058 CATCCAATGC
* *
36183068 TCAAATCGGCAATATATATACATATACAAA
1 TCAATTCGGCAATGTATATACATATACAAA
* **
36183098 TCAATTCGACAATACATATACATATACAAA
1 TCAATTCGGCAATGTATATACATATACAAA
*
36183128 TCAATTCGGTAATGTATAT-CTATATACAAA
1 TCAATTCGGCAATGTATATAC-ATATACAAA
*
36183158 TTAATTCGGCAATGTATATACATATACAAA
1 TCAATTCGGCAATGTATATACATATACAAA
* *
36183188 TCAATCCGGCAATGTATATCCATATACAAA
1 TCAATTCGGCAATGTATATACATATACAAA
* *
36183218 TCAATTCGGTAATGTATATCCATATACAAA
1 TCAATTCGGCAATGTATATACATATACAAA
* * *
36183248 TCAATTCAGCAATGTATATCCATATACGAA
1 TCAATTCGGCAATGTATATACATATACAAA
* * *
36183278 TCAATTCGGC----TATAAATATATATAAA
1 TCAATTCGGCAATGTATATACATATACAAA
**
36183304 TCAATTCGGCAATAAATATATCTATATACAAA
1 TCAATTCGGCAATGTATATA-C-ATATACAAA
* *
36183336 TCAATTTGGCAATATATA
1 TCAATTCGGCAATGTATA
36183354 AAACATGTAC
Statistics
Matches: 219, Mismatches: 29, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
26 21 0.10
29 1 0.00
30 172 0.79
31 1 0.00
32 24 0.11
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.31
Consensus pattern (30 bp):
TCAATTCGGCAATGTATATACATATACAAA
Found at i:36183176 original size:90 final size:88
Alignment explanation
Indices: 36183068--36183353 Score: 360
Period size: 90 Copynumber: 3.2 Consensus size: 88
36183058 CATCCAATGC
* *
36183068 TCAAATCGGCAATATATATACATATACAAATCAATTCGACAATACATATACATATACAAATCAAT
1 TCAATTCGGCAATATATATACATATACAAATCAATTCGGCAATA-ATAT-CATATACAAATCAAT
36183133 TCGGTAATGTATATCTATATACAAA
64 TCGGTAATGTATATCTATATACAAA
* * * *
36183158 TTAATTCGGCAATGTATATACATATACAAATCAATCCGGCAATGTATATCCATATACAAATCAAT
1 TCAATTCGGCAATATATATACATATACAAATCAATTCGGCAAT-AATAT-CATATACAAATCAAT
*
36183223 TCGGTAATGTATATCCATATACAAA
64 TCGGTAATGTATATCTATATACAAA
* * * * * *
36183248 TCAATTCAGCAATGTATATCCATATACGAATCAATTCGGCTATAA-AT-ATATATAAATCAATTC
1 TCAATTCGGCAATATATATACATATACAAATCAATTCGGCAATAATATCATATACAAATCAATTC
* *
36183311 GGCAATAAATATATCTATATACAAA
66 GGTAAT--GTATATCTATATACAAA
*
36183336 TCAATTTGGCAATATATA
1 TCAATTCGGCAATATATA
36183354 AAACATGTAC
Statistics
Matches: 171, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
86 20 0.12
88 32 0.19
89 1 0.01
90 118 0.69
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.31
Consensus pattern (88 bp):
TCAATTCGGCAATATATATACATATACAAATCAATTCGGCAATAATATCATATACAAATCAATTC
GGTAATGTATATCTATATACAAA
Found at i:36183318 original size:26 final size:26
Alignment explanation
Indices: 36183239--36183324 Score: 91
Period size: 26 Copynumber: 3.2 Consensus size: 26
36183229 ATGTATATCC
* * **
36183239 ATATACAAATCAATTCAGCAATGTAT
1 ATATATAAATCAATTCGGCAATAAAT
*
36183265 ATCCATATACGAATCAATTCGGCTATAAAT
1 AT--ATATA--AATCAATTCGGCAATAAAT
36183295 ATATATAAATCAATTCGGCAATAAAT
1 ATATATAAATCAATTCGGCAATAAAT
36183321 ATAT
1 ATAT
36183325 CTATATACAA
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
26 24 0.48
28 9 0.18
30 17 0.34
ACGTcount: A:0.45, C:0.15, G:0.08, T:0.31
Consensus pattern (26 bp):
ATATATAAATCAATTCGGCAATAAAT
Found at i:36185130 original size:21 final size:21
Alignment explanation
Indices: 36185091--36185130 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
36185081 TATTCTTGAT
* *
36185091 AATAATTAATAACATTGATTA
1 AATAATAAATAACAGTGATTA
*
36185112 AATAATAAATAATAGTGAT
1 AATAATAAATAACAGTGAT
36185131 ATTTTAAATG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.35
Consensus pattern (21 bp):
AATAATAAATAACAGTGATTA
Found at i:36185693 original size:21 final size:21
Alignment explanation
Indices: 36185669--36185709 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
36185659 TATTCTATTT
36185669 CTGGTAG-TACGACTACATTAC
1 CTGGTAGCTA-GACTACATTAC
*
36185690 CTGGTGGCTAGACTACATTA
1 CTGGTAGCTAGACTACATTA
36185710 TTGGTGTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (21 bp):
CTGGTAGCTAGACTACATTAC
Found at i:36189451 original size:19 final size:18
Alignment explanation
Indices: 36189405--36189451 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
36189395 TTTACAAGAA
*
36189405 AATAT-TGAAAAGTAAAG
1 AATATATGAAAAATAAAG
*
36189422 CATATAGTGAAAAATATAAG
1 AATATA-TGAAAAATA-AAG
36189442 AATATATGAA
1 AATATATGAA
36189452 TATTGTAGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 4 0.17
19 12 0.50
20 8 0.33
ACGTcount: A:0.57, C:0.02, G:0.15, T:0.26
Consensus pattern (18 bp):
AATATATGAAAAATAAAG
Found at i:36193906 original size:36 final size:35
Alignment explanation
Indices: 36193866--36193937 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 35
36193856 CATCTCCGGA
36193866 GCTTGGCAAATAAGGAAAGTGATCTTTTGAAGATAT
1 GCTTGGCAAATAAGGAAAGTGATCTTTTG-AGATAT
* **
36193902 GCTTGGCAAATATGGATGGTGATCTTTTGAGATAT
1 GCTTGGCAAATAAGGAAAGTGATCTTTTGAGATAT
36193937 G
1 G
36193938 TGATCCTAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 7 0.21
36 26 0.79
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.33
Consensus pattern (35 bp):
GCTTGGCAAATAAGGAAAGTGATCTTTTGAGATAT
Found at i:36195760 original size:36 final size:35
Alignment explanation
Indices: 36195720--36195791 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 35
36195710 CATCTCCGGA
36195720 GCTTGGCAAATAAGGAAAGTGATCTTTTGAAGATAT
1 GCTTGGCAAATAAGGAAAGTGATCTTTTG-AGATAT
* *
36195756 GCTTGGCAAATATGGAAGGTGATCTTTTGAGATAT
1 GCTTGGCAAATAAGGAAAGTGATCTTTTGAGATAT
36195791 G
1 G
36195792 TGATCCTAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
35 7 0.21
36 27 0.79
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (35 bp):
GCTTGGCAAATAAGGAAAGTGATCTTTTGAGATAT
Found at i:36200368 original size:18 final size:20
Alignment explanation
Indices: 36200327--36200370 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
36200317 TTATTTAGAA
*
36200327 ATATTTAATATCGTTTATAG
1 ATATTTAACATCGTTTATAG
36200347 ATATTTAACAT-GTTTA-AG
1 ATATTTAACATCGTTTATAG
36200365 ATATTT
1 ATATTT
36200371 TGTTGGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.35
19 5 0.22
20 10 0.43
ACGTcount: A:0.36, C:0.05, G:0.09, T:0.50
Consensus pattern (20 bp):
ATATTTAACATCGTTTATAG
Found at i:36204642 original size:12 final size:11
Alignment explanation
Indices: 36204608--36204645 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
36204598 TTGAAAATGA
36204608 TAAAAATTAAT
1 TAAAAATTAAT
*
36204619 CAAAAATT-AT
1 TAAAAATTAAT
36204629 TATAAAATTAAT
1 TA-AAAATTAAT
36204641 TAAAA
1 TAAAA
36204646 TTCAACACGT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 3 0.13
11 16 0.70
12 4 0.17
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (11 bp):
TAAAAATTAAT
Found at i:36208284 original size:43 final size:42
Alignment explanation
Indices: 36208236--36208486 Score: 245
Period size: 43 Copynumber: 5.9 Consensus size: 42
36208226 TTTTGGAAAT
* *
36208236 AAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTCCTCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTT-CTCAC
* * *
36208279 AAACGCCGCTATAGATCAGGATCTTTAGCGACGC-TTCTACAAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTCT-C-AC
* * * * *
36208322 AAAAGCCGCTATAGCTCAAGACCTTTAACGGCGATTTTCCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCG-CTTTCTCAC
* * * * * *
36208365 AAATGCCACTGTAGATCAAGACCTTTAGCGGCACCTTTTTTAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGC-GCTTTCTCAC
* *
36208408 AAACGCCGCTATAGATCAAGACCTTTTAGCGGCGCTTATATCAA
1 AAACGCCGCTATAGATCAAGACC-TTTAGCGGCGCTT-TCTCAC
* *
36208452 AAACGCCGCTATAGAACAA-ACCTTTAGCGACGCTT
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTT
36208487 CTTGCAAAAA
Statistics
Matches: 170, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
41 2 0.01
42 15 0.09
43 119 0.70
44 31 0.18
45 3 0.02
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (42 bp):
AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTCTCAC
Found at i:36208503 original size:129 final size:129
Alignment explanation
Indices: 36208255--36208503 Score: 281
Period size: 129 Copynumber: 1.9 Consensus size: 129
36208245 TATAGACCAT
* * * *
36208255 GACCTTTAGCGGCGCTTTCCTCACAAACGCCGCTATAGATCAGGATCTTTAGCGACGCTTCTACA
1 GACCTTTAGCGGCCCTTTCCTCACAAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTATACA
** * * **
36208320 ACAAAAGCCGCTATAGCTCAAGACCTTTAACGGCGATTTTCCCACAAATGCCACTGTAGATCAA
66 ACAAAAGCCGCTATAGAACAAGACCTTTAACGACGATTTTCCCAAAAACCCCACTGTAGATCAA
* * *
36208384 GACCTTTAGCGGCACCTTT-TTTACAAACGCCGCTATAGATCAAGACCTTTTAGCGGCGCTTATA
1 GACCTTTAGCGGC-CCTTTCCTCACAAACGCCGCTATAGATCAAGACC-TTTAGCGACGCTTATA
* * * *
36208448 TCAA-AAACGCCGCTATAGAACAA-ACCTTTAGCGACGCTTCTT-GCAAAAACCCCACT
64 -CAACAAAAGCCGCTATAGAACAAGACCTTTAACGACGATT-TTCCCAAAAACCCCACT
36208504 AAAATCATAA
Statistics
Matches: 99, Mismatches: 17, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
129 60 0.61
130 36 0.36
131 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (129 bp):
GACCTTTAGCGGCCCTTTCCTCACAAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTATACA
ACAAAAGCCGCTATAGAACAAGACCTTTAACGACGATTTTCCCAAAAACCCCACTGTAGATCAA
Found at i:36212219 original size:103 final size:103
Alignment explanation
Indices: 36212090--36212402 Score: 518
Period size: 103 Copynumber: 3.0 Consensus size: 103
36212080 GTAAAATTTT
* * ** ** *
36212090 TTTCATTCTGAACAAAACGATACCGTTTTGCTATTCTAAAAATTTTTTATTTTATTTTTTATAAA
1 TTTCATTTTGAACAAAATGACGCCGTTTTATTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
36212155 TTGATTTATTTTTTGCAGCGTTAATAAAAACGCCGCTA
66 TTGATTTATTTTTTGCAGCGTTAATAAAAACGCCGCTA
36212193 TTTCATTTTGAACAAAATGACGCCGTTTTATTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
1 TTTCATTTTGAACAAAATGACGCCGTTTTATTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
36212258 TTGATTTATTTTTTGCAGCGTTAATAAAAACGCCGCTA
66 TTGATTTATTTTTTGCAGCGTTAATAAAAACGCCGCTA
36212296 TTTCATTTTGAACAAAATGACGCCGTTTTATTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
1 TTTCATTTTGAACAAAATGACGCCGTTTTATTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
* * *
36212361 TTGATTTATTTTTTGCGGCGTTTTATAGAAAACACCGCTA
66 TTGATTTATTTTTTGCAGCG-TTAATA-AAAACGCCGCTA
36212401 TT
1 TT
36212403 GCTTATCTTT
Statistics
Matches: 198, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
103 180 0.91
104 5 0.03
105 13 0.07
ACGTcount: A:0.30, C:0.12, G:0.11, T:0.47
Consensus pattern (103 bp):
TTTCATTTTGAACAAAATGACGCCGTTTTATTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
TTGATTTATTTTTTGCAGCGTTAATAAAAACGCCGCTA
Found at i:36213242 original size:15 final size:14
Alignment explanation
Indices: 36213183--36213253 Score: 56
Period size: 14 Copynumber: 4.9 Consensus size: 14
36213173 ACCCCTGAAT
* *
36213183 CCCTAAACTTTAAAT
1 CCCTAAACCTT-AAC
36213198 CCCT-AACTCTTAAC
1 CCCTAAAC-CTTAAC
*
36213212 CCCT-AACATCTAAC
1 CCCTAAACCT-TAAC
36213226 CCCTAAACCCTTAAC
1 CCCTAAA-CCTTAAC
*
36213241 CCTTAAACCTTAA
1 CCCTAAACCTTAA
36213254 ATCCCAACCC
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
13 1 0.02
14 26 0.55
15 18 0.38
16 2 0.04
ACGTcount: A:0.35, C:0.38, G:0.00, T:0.27
Consensus pattern (14 bp):
CCCTAAACCTTAAC
Found at i:36213262 original size:21 final size:20
Alignment explanation
Indices: 36213238--36213278 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
36213228 CTAAACCCTT
*
36213238 AACCCTTAAACCTTAAATCCC
1 AACCCTTAAACCAT-AATCCC
36213259 AACCCTTAAACCATAATCCC
1 AACCCTTAAACCATAATCCC
36213279 TAATTCATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.22
Consensus pattern (20 bp):
AACCCTTAAACCATAATCCC
Found at i:36213287 original size:14 final size:14
Alignment explanation
Indices: 36213269--36213310 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
36213259 AACCCTTAAA
36213269 CCATAATCCCTAAT
1 CCATAATCCCTAAT
*
36213283 TCATAATCCCTAAAT
1 CCATAATCCCT-AAT
*
36213298 CCATACTCCCTAA
1 CCATAATCCCTAA
36213311 ACCTTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.29
Consensus pattern (14 bp):
CCATAATCCCTAAT
Found at i:36213307 original size:15 final size:15
Alignment explanation
Indices: 36213265--36213311 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
36213255 TCCCAACCCT
36213265 TAAA-CCATAATCCC
1 TAAATCCATAATCCC
*
36213279 T-AATTCATAATCCC
1 TAAATCCATAATCCC
*
36213293 TAAATCCATACTCCC
1 TAAATCCATAATCCC
36213308 TAAA
1 TAAA
36213312 CCTTAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 2 0.07
14 11 0.39
15 15 0.54
ACGTcount: A:0.40, C:0.32, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:36213517 original size:14 final size:15
Alignment explanation
Indices: 36213496--36213567 Score: 58
Period size: 15 Copynumber: 4.9 Consensus size: 15
36213486 TCCTAACTTT
36213496 TAACCCCTAAACCCC
1 TAACCCCTAAACCCC
* *
36213511 TAACCCTTTAACCCC
1 TAACCCCTAAACCCC
* * *
36213526 TAAACCTTAAATCCC
1 TAACCCCTAAACCCC
* *
36213541 -AACCCCT-AATCCA
1 TAACCCCTAAACCCC
*
36213554 TAATCCCTAAACCC
1 TAACCCCTAAACCC
36213568 ATACTACCTA
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
13 5 0.11
14 11 0.24
15 29 0.64
ACGTcount: A:0.35, C:0.44, G:0.00, T:0.21
Consensus pattern (15 bp):
TAACCCCTAAACCCC
Found at i:36214006 original size:73 final size:73
Alignment explanation
Indices: 36213828--36213999 Score: 272
Period size: 73 Copynumber: 2.4 Consensus size: 73
36213818 GATAAAATAA
* * *
36213828 TTTTAGCGGCGCTTTTCCAAAAACGCCGCTAAATCCCCGAAATCTCAGAAAACGGCGACGTTGGG
1 TTTTTGCGGCGCTTTTCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGACGTTGAG
36213893 CTTAGGTT
66 CTTAGGTT
* * *
36213901 TTTTTGCGGCGCTTTTTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAATGGCGCCGTTGAG
1 TTTTTGCGGCGCTTTTCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGACGTTGAG
36213966 CTTAGGTT
66 CTTAGGTT
* *
36213974 TTTTTGCGGAGCTTTCCCAAAAACGC
1 TTTTTGCGGCGCTTTTCCAAAAACGC
36214000 TACTAAAGGC
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 90 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (73 bp):
TTTTTGCGGCGCTTTTCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGACGTTGAG
CTTAGGTT
Found at i:36214110 original size:114 final size:114
Alignment explanation
Indices: 36213906--36214691 Score: 1040
Period size: 114 Copynumber: 6.9 Consensus size: 114
36213896 AGGTTTTTTT
* * * *
36213906 GCGGCGCTT-TTTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAATGGCGCCGTTGAGCTTA
1 GCGGCGCTTCCTT-AAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGCCGTTGGGCTTA
* * *
36213970 GGTTTTTTTGCGGAGCTTTCCCAAAAACGCTACTAAAGGCCTGAGCATTA
65 GGTTTTTTTGCGGCGCTTTCCCAAAAACGCTGCTAAAGCCCTGAGCATTA
* * * *
36214020 GTGACGCTTCCTTAAAAACGCCACAAAATCCCCGAAAGCTCAAAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGCCGTTGGGCTTAG
*
36214085 GTTTTTTTGCGGCGCTTTCCCAAAAAC-ATCGCTAAAGCCCTGAGCATTA
66 GTTTTTTTGCGGCGCTTTCCCAAAAACGCT-GCTAAAGCCCTGAGCATTA
* * * * * *
36214134 GCAGCGCTTCCCTAAAAAAGCCGCTAAATCCCCGAAAGCTTATAAAACGGCGCCGTTGGTCTTAG
1 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGCCGTTGGGCTTAG
* * *
36214199 GTTTGTTTGCGGCGCTTTCCCAAAAATGCCGCTAAAGCCCTGAGCATTA
66 GTTTTTTTGCGGCGCTTTCCCAAAAACGCTGCTAAAGCCCTGAGCATTA
* * * * *
36214248 GCGGTGCTTCCTTAAAAACGCCACTAAATCCCTGATAGCTCAGAAAACGGCGCCGTTGGGCTTAG
1 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGCCGTTGGGCTTAG
36214313 GTTTTTTTGCGGCGCTTTCCCAAAAACG-TCGCTAAAGCCCTGAGCATTA
66 GTTTTTTTGCGGCGCTTTCCCAAAAACGCT-GCTAAAGCCCTGAGCATTA
* * * * * *
36214362 GGGGCGCTTCCCTAAAAACGCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGTCTTAG
1 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGCCGTTGGGCTTAG
* *
36214427 GTTTGTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTA
66 GTTTTTTTGCGGCGCTTTCCCAAAAACGCTGCTAAAGCCCTGAGCATTA
* * * * *
36214476 GCGGCACTTCCTTAAAAATGCCGCTAAATCCCCGATAGCTCAGAAAAA-GGCACCGTTCGGCTTA
1 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCCCGAAAGCTCA-AAAAACGGCGCCGTTGGGCTTA
* *
36214540 GGTTTTTTTGCGGCGCTTTCCCAAAAACACCGCTAAAGCCCTGAGCATTA
65 GGTTTTTTTGCGGCGCTTTCCCAAAAACGCTGCTAAAGCCCTGAGCATTA
* * * * * *
36214590 GCGGTGCTTTCTGAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGCTAGGCTTAG
1 GCGGCGCTTCCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGCCGTTGGGCTTAG
* * * *
36214655 GTTTTTTTTACGGTGCTTTCCGAAAAACGCTACTAAA
66 G-TTTTTTTGCGGCGCTTTCCCAAAAACGCTGCTAAA
36214692 TCCCCGAAAG
Statistics
Matches: 585, Mismatches: 79, Indels: 15
0.86 0.12 0.02
Matches are distributed among these distances:
113 6 0.01
114 544 0.93
115 35 0.06
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (114 bp):
GCGGCGCTTCCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGCCGTTGGGCTTAG
GTTTTTTTGCGGCGCTTTCCCAAAAACGCTGCTAAAGCCCTGAGCATTA
Found at i:36214680 original size:74 final size:74
Alignment explanation
Indices: 36214591--36214735 Score: 211
Period size: 74 Copynumber: 2.0 Consensus size: 74
36214581 TGAGCATTAG
* *
36214591 CGGTGCTTTCTGAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGCTAGG-CTTAG
1 CGGTGCTTTCCGAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCG-TAGGACTTAG
36214655 GTTTTTTTTA
65 GTTTTTTTTA
* *** *
36214665 CGGTGCTTTCCGAAAAACGCTACTAAATCCCCGAAAGCTCGGGAAACGGCGTCGTTGGACTTAGG
1 CGGTGCTTTCCGAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTAGGACTTAGG
36214730 TTTTTT
66 TTTTTT
36214736 GTGGCACTTT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
73 3 0.05
74 60 0.95
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (74 bp):
CGGTGCTTTCCGAAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTAGGACTTAGG
TTTTTTTTA
Found at i:36218965 original size:44 final size:44
Alignment explanation
Indices: 36218902--36218990 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
36218892 CCTCACTAAG
36218902 ATTAGCCTCAATTAACCGAACATGGATTCATAAATAGAGACACA
1 ATTAGCCTCAATTAACCGAACATGGATTCATAAATAGAGACACA
*
36218946 ATTAGCCTTAATTAACCGAACATGGATTCATAAATAGAGACACA
1 ATTAGCCTCAATTAACCGAACATGGATTCATAAATAGAGACACA
36218990 A
1 A
36218991 ATATCCAAGC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.44, C:0.19, G:0.13, T:0.24
Consensus pattern (44 bp):
ATTAGCCTCAATTAACCGAACATGGATTCATAAATAGAGACACA
Found at i:36220762 original size:15 final size:16
Alignment explanation
Indices: 36220737--36220778 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
36220727 GGTTGCCAGC
36220737 TGGATTATATACGAAAA
1 TGGA-TATATACGAAAA
36220754 TGGTATATATACGAAAA
1 TGG-ATATATACGAAAA
36220771 TGG-TATAT
1 TGGATATAT
36220779 TTTTTGGGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 5 0.21
17 18 0.75
18 1 0.04
ACGTcount: A:0.43, C:0.05, G:0.19, T:0.33
Consensus pattern (16 bp):
TGGATATATACGAAAA
Found at i:36220764 original size:17 final size:17
Alignment explanation
Indices: 36220742--36220778 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
36220732 CCAGCTGGAT
36220742 TATATACGAAAATGGTA
1 TATATACGAAAATGGTA
36220759 TATATACGAAAATGGTA
1 TATATACGAAAATGGTA
36220776 TAT
1 TAT
36220779 TTTTTGGGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.05, G:0.16, T:0.32
Consensus pattern (17 bp):
TATATACGAAAATGGTA
Found at i:36220861 original size:20 final size:21
Alignment explanation
Indices: 36220825--36220863 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
36220815 TTTTTTATAT
*
36220825 TAAAATATTTTTTATTTTAAA
1 TAAAATATTTATTATTTTAAA
36220846 TAAAATA-TTATTATTTTA
1 TAAAATATTTATTATTTTA
36220864 TTTTTATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TAAAATATTTATTATTTTAAA
Found at i:36220874 original size:25 final size:25
Alignment explanation
Indices: 36220830--36220880 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
36220820 TATATTAAAA
36220830 TATTTTTTATTTTAAAT-AAAATAT
1 TATTTTTTATTTTAAATAAAAATAT
* *
36220854 TATTATTTTATTTTTATTAAAAATAT
1 TATT-TTTTATTTTAAATAAAAATAT
36220880 T
1 T
36220881 TAAATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 4 0.17
25 11 0.48
26 8 0.35
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
TATTTTTTATTTTAAATAAAAATAT
Found at i:36221204 original size:3 final size:3
Alignment explanation
Indices: 36221182--36221222 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
36221172 GAGAGAAAGG
* *
36221182 AGA AGA A-A AAA AGA ATA AGA AGA AGA AG- AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
36221223 AGAAAGAAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
2 4 0.12
3 29 0.88
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:36221204 original size:17 final size:17
Alignment explanation
Indices: 36221182--36221230 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
36221172 GAGAGAAAGG
*
36221182 AGAAGAAAAAAAGAATA
1 AGAAGAAAAAAAGAAGA
* *
36221199 AGAAGAAGAAGAGAAGA
1 AGAAGAAAAAAAGAAGA
*
36221216 AGAAGAAAGAAAGAA
1 AGAAGAAAAAAAGAA
36221231 AGAAAAAGGT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (17 bp):
AGAAGAAAAAAAGAAGA
Found at i:36221217 original size:14 final size:13
Alignment explanation
Indices: 36221169--36221230 Score: 53
Period size: 11 Copynumber: 5.0 Consensus size: 13
36221159 AGGTGCACCG
*
36221169 GAAGAGAGAAAGGA
1 GAAGA-AGAAAGAA
36221183 GAAGAA-AAA-AA
1 GAAGAAGAAAGAA
*
36221194 GAATAAG-AAGAA
1 GAAGAAGAAAGAA
36221206 GAAG-AG-AAGAA
1 GAAGAAGAAAGAA
36221217 GAAGAAAGAAAGAA
1 GAAG-AAGAAAGAA
36221231 AGAAAAAGGT
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
11 19 0.47
12 8 0.20
13 3 0.08
14 10 0.25
ACGTcount: A:0.68, C:0.00, G:0.31, T:0.02
Consensus pattern (13 bp):
GAAGAAGAAAGAA
Found at i:36221483 original size:60 final size:60
Alignment explanation
Indices: 36221390--36221504 Score: 212
Period size: 60 Copynumber: 1.9 Consensus size: 60
36221380 TAATTTTTTA
* *
36221390 TAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATTATGTTATAACTTGTTGTGTTTG
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTTG
36221450 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGT
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGT
36221505 ATTTATTTTA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.33, C:0.01, G:0.13, T:0.53
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTTG
Found at i:36221784 original size:16 final size:16
Alignment explanation
Indices: 36221763--36221815 Score: 88
Period size: 16 Copynumber: 3.3 Consensus size: 16
36221753 TTGGTTCGCT
*
36221763 GTAATGGAATAGAGAC
1 GTAATGGAATAGAGGC
*
36221779 GTAATGGAATAGAGGT
1 GTAATGGAATAGAGGC
36221795 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
36221811 GTAAT
1 GTAAT
36221816 AGCAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.40, C:0.04, G:0.34, T:0.23
Consensus pattern (16 bp):
GTAATGGAATAGAGGC
Found at i:36226094 original size:103 final size:103
Alignment explanation
Indices: 36225896--36226136 Score: 369
Period size: 103 Copynumber: 2.3 Consensus size: 103
36225886 CCAAACATGC
* * * *
36225896 TGTTAGTGTTTAGTATAGGGTTTTGTGATTTTCTAGTAATGTAATTTTTTAAAAAATAATTTTAT
1 TGTTAGTGTTTAGTATAGTGTTTTGTGATTTT-TAGTAATGTAATTATTAAAAAAATAAATTTAT
* *
36225961 AGTTATTTTGTTAGTATTTTATGATTAGGTTATATAAAT
65 AGTTATTTTATTAGTAATTTATGATTAGGTTATATAAAT
36226000 TGTTAGTGTTTAGGTAT-GTGTTTTGTGATATTTTAGTAATGT-ATTATTAAAAAAATAAATTTA
1 TGTTAGTGTTTA-GTATAGTGTTTTGTGAT-TTTTAGTAATGTAATTATTAAAAAAATAAATTTA
*
36226063 TAGTTATTTTATTAGTAATTTATGATTAGGTTATATAATT
64 TAGTTATTTTATTAGTAATTTATGATTAGGTTATATAAAT
*
36226103 TGTTAGTGTTTAGTTTAGTGTTTTGTGATTTTTA
1 TGTTAGTGTTTAGTATAGTGTTTTGTGATTTTTA
36226137 ATGTAATTTT
Statistics
Matches: 126, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
102 8 0.06
103 79 0.63
104 32 0.25
105 7 0.06
ACGTcount: A:0.29, C:0.00, G:0.17, T:0.54
Consensus pattern (103 bp):
TGTTAGTGTTTAGTATAGTGTTTTGTGATTTTTAGTAATGTAATTATTAAAAAAATAAATTTATA
GTTATTTTATTAGTAATTTATGATTAGGTTATATAAAT
Found at i:36228650 original size:91 final size:90
Alignment explanation
Indices: 36228529--36228709 Score: 258
Period size: 93 Copynumber: 2.0 Consensus size: 90
36228519 ATTTTATGAG
36228529 TTTATTTTTTTCTGCAATTTAAATAGTCAACTTCATA-TT-TGAAATGAATTTGTTATCATTTTA
1 TTTATTTTTTTCTGCAATTTAAATAGTCAACTTCATATTTATGAAATGAATTTGTTATCATTTTA
36228592 TTTATCAAATTTATGGGTTTATTTTT
66 TTTATCAAATTTATGGGTTT-TTTTT
* ** * * *
36228618 TTTATTTTTTATTTTGCAATTTAAATAGTCAACTTTGTATTTATGTAATGAATTTTTTGTCATTT
1 TTTA-TTTTT-TTCTGCAATTTAAATAGTCAACTTCATATTTATGAAATGAATTTGTTATCATTT
*
36228683 TATTTATCAATTTTATGGGTTTTTTTT
64 TATTTATCAAATTTATGGGTTTTTTTT
36228710 CAATTTAAAT
Statistics
Matches: 81, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
89 4 0.05
90 5 0.06
91 25 0.31
92 7 0.09
93 40 0.49
ACGTcount: A:0.26, C:0.07, G:0.09, T:0.58
Consensus pattern (90 bp):
TTTATTTTTTTCTGCAATTTAAATAGTCAACTTCATATTTATGAAATGAATTTGTTATCATTTTA
TTTATCAAATTTATGGGTTTTTTTT
Found at i:36228714 original size:76 final size:77
Alignment explanation
Indices: 36228624--36228797 Score: 289
Period size: 76 Copynumber: 2.3 Consensus size: 77
36228614 TTTTTTTATT
36228624 TTTTATTTTGCAATTTAAATAGTCAACTTTGTATTTATGTAATGAATTTTTTGT-CATTTTATTT
1 TTTT-TTTTGCAATTTAAATAGTCAACTTTGTATTTATGTAATGAATTTTTT-TCCATTTTATTT
**
36228688 ATCAATTTTATGGG
64 ATCAATTTTATGAA
*
36228702 TTTTTTTT-CAATTTAAATAGTCAACTTTGTATTTATGTAATGACTTTTTTTCCATTTTATTTAT
1 TTTTTTTTGCAATTTAAATAGTCAACTTTGTATTTATGTAATGAATTTTTTTCCATTTTATTTAT
36228766 CAATTTTATGAA
66 CAATTTTATGAA
36228778 TTTTTTTTGCAATTTAAATA
1 TTTTTTTTGCAATTTAAATA
36228798 AATAAACTTT
Statistics
Matches: 91, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
75 1 0.01
76 71 0.78
77 15 0.16
78 4 0.04
ACGTcount: A:0.28, C:0.07, G:0.09, T:0.56
Consensus pattern (77 bp):
TTTTTTTTGCAATTTAAATAGTCAACTTTGTATTTATGTAATGAATTTTTTTCCATTTTATTTAT
CAATTTTATGAA
Found at i:36238146 original size:13 final size:12
Alignment explanation
Indices: 36238128--36238159 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 12
36238118 TTCAAAACCC
36238128 AAAAAAAAGGAGA
1 AAAAAAAAGGA-A
36238141 AAAAAAAAGGAA
1 AAAAAAAAGGAA
36238153 AAAAAAA
1 AAAAAAA
36238160 GCCCTAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGGAA
Found at i:36238160 original size:11 final size:12
Alignment explanation
Indices: 36238128--36238160 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
36238118 TTCAAAACCC
*
36238128 AAAAAAAAGGAG
1 AAAAAAAAAGAG
36238140 AAAAAAAAAG-G
1 AAAAAAAAAGAG
36238151 AAAAAAAAAG
1 AAAAAAAAAG
36238161 CCCTAATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAGAG
Found at i:36238427 original size:31 final size:33
Alignment explanation
Indices: 36238367--36238432 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
36238357 TGCAATCGTT
36238367 AGGGTGAAGAGAGTGAAAAGAGGAGCTGT-GAAA
1 AGGGTGAAGAGAGTG-AAAGAGGAGCTGTGGAAA
*
36238400 AGGGTGAAGAGAGTG-AAGATGAGCTGTGGAAA
1 AGGGTGAAGAGAGTGAAAGAGGAGCTGTGGAAA
36238432 A
1 A
36238433 TGTCTTACCC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
31 11 0.35
32 5 0.16
33 15 0.48
ACGTcount: A:0.41, C:0.03, G:0.42, T:0.14
Consensus pattern (33 bp):
AGGGTGAAGAGAGTGAAAGAGGAGCTGTGGAAA
Found at i:36244832 original size:26 final size:26
Alignment explanation
Indices: 36244783--36244834 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
36244773 TTTAAAATAC
*
36244783 TTTAAAAAATTTTTTATTTTTTTATT
1 TTTAAAAAATTTTTTATTTGTTTATT
*
36244809 TTTAAAATATTTTTT-TTGTGTTTATT
1 TTTAAAAAATTTTTTATT-TGTTTATT
36244835 AAAAATCGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (26 bp):
TTTAAAAAATTTTTTATTTGTTTATT
Found at i:36250590 original size:49 final size:50
Alignment explanation
Indices: 36250518--36250641 Score: 169
Period size: 50 Copynumber: 2.5 Consensus size: 50
36250508 TCATTAGTGA
* *
36250518 TTACCGATTCTCAACTCATATGAGCTTACCGA-TTACAGCTCGTGAAAGC
1 TTACCGATTCTTAACTCGTATGAGCTTACCGATTTACAGCTCGTGAAAGC
* * *
36250567 TTACCAATTCTTAACTCGTATGAGCTTGCCGATTTACAGCTCGTGAGAGC
1 TTACCGATTCTTAACTCGTATGAGCTTACCGATTTACAGCTCGTGAAAGC
* * *
36250617 ATACCGATTCATAGCTCGTATGAGC
1 TTACCGATTCTTAACTCGTATGAGC
36250642 ATATATGTAT
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
49 28 0.43
50 37 0.57
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (50 bp):
TTACCGATTCTTAACTCGTATGAGCTTACCGATTTACAGCTCGTGAAAGC
Found at i:36250644 original size:25 final size:25
Alignment explanation
Indices: 36250518--36250641 Score: 94
Period size: 25 Copynumber: 5.0 Consensus size: 25
36250508 TCATTAGTGA
* *
36250518 TTACCGATTC-TCAACTCATATGAGC
1 TTACCGATTCAT-AGCTCGTATGAGC
* *
36250543 TTACCGATT-ACAGCTCGTGA-AAGC
1 TTACCGATTCATAGCTCGT-ATGAGC
* * *
36250567 TTACCAATTCTTAACTCGTATGAGC
1 TTACCGATTCATAGCTCGTATGAGC
* * *
36250592 TTGCCGATTTACAGCTCGTGA-GAGC
1 TTACCGATTCATAGCTCGT-ATGAGC
*
36250617 ATACCGATTCATAGCTCGTATGAGC
1 TTACCGATTCATAGCTCGTATGAGC
36250642 ATATATGTAT
Statistics
Matches: 74, Mismatches: 19, Indels: 12
0.70 0.18 0.11
Matches are distributed among these distances:
24 18 0.24
25 55 0.74
26 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (25 bp):
TTACCGATTCATAGCTCGTATGAGC
Found at i:36258049 original size:19 final size:19
Alignment explanation
Indices: 36258021--36258066 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
36258011 TGATTTATTC
*
36258021 TAAGAATTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
36258040 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
36258059 TAA-ATTTA
1 TAAGATTTA
36258067 AAATATATCC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.46, C:0.13, G:0.04, T:0.37
Consensus pattern (19 bp):
TAAGATTTATCTACCTAAA
Found at i:36258157 original size:30 final size:28
Alignment explanation
Indices: 36258117--36258196 Score: 81
Period size: 30 Copynumber: 2.8 Consensus size: 28
36258107 AAGTTTGTTA
*
36258117 TATGAGGACGCCTTCATGGCTATCTAATGT
1 TATGTGGACGCCTTCATGGCTATCT-AT-T
**
36258147 TATGTGGACGCCTTTGTGGCTATCTATT
1 TATGTGGACGCCTTCATGGCTATCTATT
* *
36258175 TGTATGGACGCC-TCTATGGCTA
1 TATGTGGACGCCTTC-ATGGCTA
36258197 CCTTGTGCAT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
27 1 0.02
28 17 0.40
29 2 0.05
30 22 0.52
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (28 bp):
TATGTGGACGCCTTCATGGCTATCTATT
Found at i:36258194 original size:28 final size:29
Alignment explanation
Indices: 36258112--36258196 Score: 84
Period size: 28 Copynumber: 2.8 Consensus size: 29
36258102 TCAACAAGTT
36258112 TGTTATATGAGGACGCCTTCATGGCTATCTAA
1 TGTTATAT--GGACGCCTT-ATGGCTATCTAA
* *
36258144 TGTTATGTGGACGCCTTTGTGGCTATCT-A
1 TGTTATATGGACGCC-TTATGGCTATCTAA
*
36258173 T-TTGTATGGACGCCTCTATGGCTA
1 TGTTATATGGACGCCT-TATGGCTA
36258197 CCTTGTGCAT
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
27 1 0.02
28 18 0.39
29 2 0.04
30 16 0.35
31 2 0.04
32 7 0.15
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.38
Consensus pattern (29 bp):
TGTTATATGGACGCCTTATGGCTATCTAA
Found at i:36268384 original size:12 final size:12
Alignment explanation
Indices: 36268369--36268395 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
36268359 ACATAAATTT
36268369 TAATTTAATATA
1 TAATTTAATATA
36268381 TAATTTAATATA
1 TAATTTAATATA
36268393 TAA
1 TAA
36268396 ATTTTGATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
TAATTTAATATA
Found at i:36268397 original size:31 final size:28
Alignment explanation
Indices: 36268352--36268444 Score: 87
Period size: 30 Copynumber: 3.1 Consensus size: 28
36268342 AAAAGTATTA
*
36268352 AATTTATACATAAATTTTAATTTAATATAT
1 AATTTATATATAAATTTTAATTT--TATAT
* * *
36268382 AATTTAATATATAAATTTTGATTTTGTGT
1 AATTT-ATATATAAATTTTAATTTTATAT
* *
36268411 AATTTTATATATAAAATTTTAATTTGATCT
1 AA-TTTATATAT-AAATTTTAATTTTATAT
36268441 AATT
1 AATT
36268445 CTTTTAAATT
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
29 13 0.25
30 23 0.44
31 16 0.31
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (28 bp):
AATTTATATATAAATTTTAATTTTATAT
Found at i:36268420 original size:29 final size:30
Alignment explanation
Indices: 36268354--36268435 Score: 94
Period size: 31 Copynumber: 2.7 Consensus size: 30
36268344 AAGTATTAAA
*
36268354 TTTATACATAAATTTTAATTTAATATATAAT
1 TTTATATATAAATTTTAATTT-ATATATAAT
* * * *
36268385 TTAATATATAAATTTTGATTT-TGTGTAAT
1 TTTATATATAAATTTTAATTTATATATAAT
36268414 TTTATATATAAAATTTTAATTT
1 TTTATATAT-AAATTTTAATTT
36268436 GATCTAATTC
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 14 0.33
30 11 0.26
31 18 0.42
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.55
Consensus pattern (30 bp):
TTTATATATAAATTTTAATTTATATATAAT
Found at i:36268436 original size:29 final size:29
Alignment explanation
Indices: 36268381--36268436 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
36268371 ATTTAATATA
*
36268381 TAATTTAATATATAAATTTTGATTTTGTG
1 TAATTTAATATATAAATTTTGAATTTGTG
*
36268410 TAATTTTATATATAAAATTTT-AATTTG
1 TAATTTAATATAT-AAATTTTGAATTTG
36268437 ATCTAATTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (29 bp):
TAATTTAATATATAAATTTTGAATTTGTG
Found at i:36271550 original size:13 final size:13
Alignment explanation
Indices: 36271532--36271559 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
36271522 GCACGTTCCC
36271532 TGCATGGCCACCT
1 TGCATGGCCACCT
36271545 TGCATGGCCACCT
1 TGCATGGCCACCT
36271558 TG
1 TG
36271560 GCTGCTGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.36, G:0.25, T:0.25
Consensus pattern (13 bp):
TGCATGGCCACCT
Found at i:36272699 original size:21 final size:21
Alignment explanation
Indices: 36272667--36272707 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
36272657 AGGCTTGAGG
36272667 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
36272688 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
36272708 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:36277620 original size:37 final size:35
Alignment explanation
Indices: 36277554--36277622 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
36277544 ATTTGAAAAA
* *
36277554 TTATAAATATATAAATGTATAAAAGAACTAAAATT
1 TTATAAATATAAAAATATATAAAAGAACTAAAATT
36277589 TTATAAACTTATAAAAATATATAAAAGAACTAAA
1 TTATAAA--TATAAAAATATATAAAAGAACTAAA
36277623 GAAACCCATC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
35 7 0.23
37 23 0.77
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.32
Consensus pattern (35 bp):
TTATAAATATAAAAATATATAAAAGAACTAAAATT
Found at i:36282811 original size:43 final size:42
Alignment explanation
Indices: 36282693--36282811 Score: 125
Period size: 44 Copynumber: 2.7 Consensus size: 42
36282683 CATAAGATTC
* *
36282693 CGATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTACGTGTAAGACC-CGTCTGGGACGTTGGCAT
* *
36282736 CGAT-TTGAGATTTACGTGTAAGACCCTGTCTGGGACAG-TGGTAT
1 CGATATT-TGA-TTACGTGTAAGACCC-GTCTGGGAC-GTTGGCAT
*
36282780 CGATATTTGATTACATGTAAGACCTCGTCTGG
1 CGATATTTGATTACGTGTAAGACC-CGTCTGG
36282812 ATGAATTTGA
Statistics
Matches: 64, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
42 1 0.02
43 26 0.41
44 34 0.53
45 3 0.05
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.32
Consensus pattern (42 bp):
CGATATTTGATTACGTGTAAGACCCGTCTGGGACGTTGGCAT
Found at i:36283204 original size:43 final size:42
Alignment explanation
Indices: 36283157--36283287 Score: 145
Period size: 43 Copynumber: 3.0 Consensus size: 42
36283147 ACATAAGATT
36283157 TCGATATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGCA
1 TCGATATGTGATTTCGTGTAAGACC-CGTCTGGGACATTGGCA
* * * *
36283200 TCGATTTGAGATTTACGTGTAAGACCCTGTCTGGGACAGTGGTA
1 TCGATATGTGATTT-CGTGTAAGACCC-GTCTGGGACATTGGCA
* * * * *
36283244 TCGATATTTGATTACATGTAAGACCTCGTCTAGGACGTTGGCA
1 TCGATATGTGATTTCGTGTAAGACC-CGTCTGGGACATTGGCA
36283287 T
1 T
36283288 TGTACGAGCT
Statistics
Matches: 72, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
43 36 0.50
44 36 0.50
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.32
Consensus pattern (42 bp):
TCGATATGTGATTTCGTGTAAGACCCGTCTGGGACATTGGCA
Found at i:36283215 original size:465 final size:465
Alignment explanation
Indices: 36282344--36283274 Score: 1844
Period size: 465 Copynumber: 2.0 Consensus size: 465
36282334 TTTGTGTTTT
36282344 TGGATGAATTTGAATAAATATATGACTAAACAAGTCAAATTTGTATTAATTTAGATCAAGAAAAG
1 TGGATGAATTTGAATAAATATATGACTAAACAAGTCAAATTTGTATTAATTTAGATCAAGAAAAG
36282409 AAGAAATCGAATTTGGATCGGAGGAAATCAAAAGTTGTCGAATAGTCGTCCCGGTCCGTTCGTCT
66 AAGAAATCGAATTTGGATCGGAGGAAATCAAAAGTTGTCGAATAGTCGTCCCGGTCCGTTCGTCT
36282474 TCGTCCGAGGTAAGATTGTAAGTGAATAAAGGATGTTAAATTGTATGTATTTATTTTGTACATAG
131 TCGTCCGAGGTAAGATTGTAAGTGAATAAAGGATGTTAAATTGTATGTATTTATTTTGTACATAG
36282539 TCAAATTGAATTGTATGTATGTATAATTACATTGCCGAATTGAATTTAGCATGGAATGATTTGTT
196 TCAAATTGAATTGTATGTATGTATAATTACATTGCCGAATTGAATTTAGCATGGAATGATTTGTT
36282604 ACGAGCTTGAATCGATCAAAATACGACGTCCGAAAGCCCCGTTCGAACCTTAGGAATAGTTAGAA
261 ACGAGCTTGAATCGATCAAAATACGACGTCCGAAAGCCCCGTTCGAACCTTAGGAATAGTTAGAA
*
36282669 TACATATGTCATGACATAAGATTCCGATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGC
326 TACATATGTCATGACATAAGATTCCGATATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGC
36282734 ATCGATTTGAGATTTACGTGTAAGACCCTGTCTGGGACAGTGGTATCGATATTTGATTACATGTA
391 ATCGATTTGAGATTTACGTGTAAGACCCTGTCTGGGACAGTGGTATCGATATTTGATTACATGTA
36282799 AGACCTCGTC
456 AGACCTCGTC
36282809 TGGATGAATTTGAATAAATATATGACTAAACAAGTCAAATTTGTATTAATTTAGATCAAGAAAAG
1 TGGATGAATTTGAATAAATATATGACTAAACAAGTCAAATTTGTATTAATTTAGATCAAGAAAAG
36282874 AAGAAATCGAATTTGGATCGGAGGAAATCAAAAGTTGTCGAATAGTCGTCCCGGTCCGTTCGTCT
66 AAGAAATCGAATTTGGATCGGAGGAAATCAAAAGTTGTCGAATAGTCGTCCCGGTCCGTTCGTCT
36282939 TCGTCCGAGGTAAGATTGTAAGTGAATAAAGGATGTTAAATTGTATGTATTTATTTTGTACATAG
131 TCGTCCGAGGTAAGATTGTAAGTGAATAAAGGATGTTAAATTGTATGTATTTATTTTGTACATAG
36283004 TCAAATTGAATTGTATGTATGTATAATTACATTGCCGAATTGAATTTAGCATGGAATGATTTGTT
196 TCAAATTGAATTGTATGTATGTATAATTACATTGCCGAATTGAATTTAGCATGGAATGATTTGTT
36283069 ACGAGCTTGAATCGATCAAAATACGACGTCCGAAAGCCCCGTTCGAACCTTAGGAATAGTTAGAA
261 ACGAGCTTGAATCGATCAAAATACGACGTCCGAAAGCCCCGTTCGAACCTTAGGAATAGTTAGAA
*
36283134 TACATATGTCATGACATAAGATTTCGATATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGC
326 TACATATGTCATGACATAAGATTCCGATATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGC
36283199 ATCGATTTGAGATTTACGTGTAAGACCCTGTCTGGGACAGTGGTATCGATATTTGATTACATGTA
391 ATCGATTTGAGATTTACGTGTAAGACCCTGTCTGGGACAGTGGTATCGATATTTGATTACATGTA
36283264 AGACCTCGTC
456 AGACCTCGTC
36283274 T
1 T
36283275 AGGACGTTGG
Statistics
Matches: 464, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
465 464 1.00
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (465 bp):
TGGATGAATTTGAATAAATATATGACTAAACAAGTCAAATTTGTATTAATTTAGATCAAGAAAAG
AAGAAATCGAATTTGGATCGGAGGAAATCAAAAGTTGTCGAATAGTCGTCCCGGTCCGTTCGTCT
TCGTCCGAGGTAAGATTGTAAGTGAATAAAGGATGTTAAATTGTATGTATTTATTTTGTACATAG
TCAAATTGAATTGTATGTATGTATAATTACATTGCCGAATTGAATTTAGCATGGAATGATTTGTT
ACGAGCTTGAATCGATCAAAATACGACGTCCGAAAGCCCCGTTCGAACCTTAGGAATAGTTAGAA
TACATATGTCATGACATAAGATTCCGATATGTGATTTCGTGTAAGACCACGTCTGGGACATTGGC
ATCGATTTGAGATTTACGTGTAAGACCCTGTCTGGGACAGTGGTATCGATATTTGATTACATGTA
AGACCTCGTC
Found at i:36287021 original size:25 final size:25
Alignment explanation
Indices: 36286972--36287023 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
36286962 AAAATATAAA
*
36286972 ATAAAATATTTTAATATAATTTATT
1 ATAAAATATTTTAATATAATATATT
*
36286997 ATAAAATATTTTATATTTAA-ATATT
1 ATAAAATATTTTA-ATATAATATATT
36287022 AT
1 AT
36287024 CAGTGTGACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
ATAAAATATTTTAATATAATATATT
Found at i:36295019 original size:34 final size:34
Alignment explanation
Indices: 36294977--36295083 Score: 178
Period size: 34 Copynumber: 3.1 Consensus size: 34
36294967 GACAATGATG
** *
36294977 CTAAATTTTGAAGCGTTTATGTGATAAAACGCCG
1 CTAAATTTTGCGGCGTTTATGTGATAAAACGCCA
36295011 CTAAATTTTGCGGCGTTTATGTGATAAAACGCCA
1 CTAAATTTTGCGGCGTTTATGTGATAAAACGCCA
*
36295045 CTAAATTTTGCGGCGTTAATGTGATAAAACGCCA
1 CTAAATTTTGCGGCGTTTATGTGATAAAACGCCA
36295079 CTAAA
1 CTAAA
36295084 GAACATGATA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 69 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (34 bp):
CTAAATTTTGCGGCGTTTATGTGATAAAACGCCA
Found at i:36295205 original size:43 final size:43
Alignment explanation
Indices: 36295071--36295193 Score: 183
Period size: 43 Copynumber: 2.9 Consensus size: 43
36295061 TAATGTGATA
* * *
36295071 AAACGCCACTAAAGAACATGATATTTATCGGCGCTTAACCCAC
1 AAACGCCACTAAAGAACATGATCTTTAGCGGCGCTTTACCCAC
*
36295114 AAACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTACCCAC
1 AAACGCCACTAAAGAACATGATCTTTAGCGGCGCTTTACCCAC
* * *
36295157 AAACGCCGCTAAACAATATGATCTTTAGCGGCGCTTT
1 AAACGCCACTAAAGAACATGATCTTTAGCGGCGCTTT
36295194 TATCACAAAC
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 72 1.00
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.22
Consensus pattern (43 bp):
AAACGCCACTAAAGAACATGATCTTTAGCGGCGCTTTACCCAC
Found at i:36295211 original size:43 final size:43
Alignment explanation
Indices: 36295071--36295212 Score: 160
Period size: 43 Copynumber: 3.3 Consensus size: 43
36295061 TAATGTGATA
* * ** * *
36295071 AAACGCCACTAAAGAACATGATATTTATCGGCGCTTAACCCAC
1 AAACGCCGCTAAACAACATGACCTTTAGCGGCGCTTTACCCAC
* *
36295114 AAACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTACCCAC
1 AAACGCCGCTAAACAACATGACCTTTAGCGGCGCTTTACCCAC
* * *
36295157 AAACGCCGCTAAACAATATGATCTTTAGCGGCGCTTTTA-TCAC
1 AAACGCCGCTAAACAACATGACCTTTAGCGGCGC-TTTACCCAC
*
36295200 AAACGCGGCTAAA
1 AAACGCCGCTAAA
36295213 AGTGATTTTT
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
43 84 0.95
44 4 0.05
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.21
Consensus pattern (43 bp):
AAACGCCGCTAAACAACATGACCTTTAGCGGCGCTTTACCCAC
Found at i:36295504 original size:28 final size:28
Alignment explanation
Indices: 36295468--36295525 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
36295458 TTAGTTAATG
36295468 TTAAAAAACTAACTAATACAATAATGCT
1 TTAAAAAACTAACTAATACAATAATGCT
36295496 TTAAAAAACTAACTAATACAATAATGCT
1 TTAAAAAACTAACTAATACAATAATGCT
36295524 TT
1 TT
36295526 GATATGCATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.52, C:0.14, G:0.03, T:0.31
Consensus pattern (28 bp):
TTAAAAAACTAACTAATACAATAATGCT
Found at i:36299005 original size:20 final size:20
Alignment explanation
Indices: 36298980--36299020 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
36298970 ATGTTATAAT
36298980 TTTTTTTATTTACCAAAATA
1 TTTTTTTATTTACCAAAATA
*
36299000 TTTTTTTATTTATCAAAATA
1 TTTTTTTATTTACCAAAATA
36299020 T
1 T
36299021 ATCAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTTTTATTTACCAAAATA
Found at i:36299317 original size:19 final size:21
Alignment explanation
Indices: 36299279--36299317 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
36299269 AAAAATTGAT
*
36299279 TATATTGTTGTTATTATTTTG
1 TATATTGTTGTTAATATTTTG
36299300 TATATT-TTG-TAATATTTT
1 TATATTGTTGTTAATATTTT
36299318 TTGTTTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (21 bp):
TATATTGTTGTTAATATTTTG
Found at i:36299390 original size:3 final size:3
Alignment explanation
Indices: 36299384--36299412 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
36299374 ATTATTATTA
36299384 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
36299413 AGTATTAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:36300296 original size:18 final size:18
Alignment explanation
Indices: 36300273--36300310 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
36300263 GGTTGGTGGT
36300273 GAAGAAGAAGGTGCTGGC
1 GAAGAAGAAGGTGCTGGC
*
36300291 GAAGAAGAAGGTGGTGGC
1 GAAGAAGAAGGTGCTGGC
36300309 GA
1 GA
36300311 TCATTGGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.08, G:0.47, T:0.11
Consensus pattern (18 bp):
GAAGAAGAAGGTGCTGGC
Found at i:36305541 original size:16 final size:15
Alignment explanation
Indices: 36305520--36305549 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
36305510 AATAAAAATA
36305520 TATTATTTTCATATTT
1 TATTATTTT-ATATTT
36305536 TATTATTTTATATT
1 TATTATTTTATATT
36305550 ATTTCAGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTATTTTATATTT
Found at i:36306120 original size:17 final size:17
Alignment explanation
Indices: 36306100--36306275 Score: 83
Period size: 18 Copynumber: 10.6 Consensus size: 17
36306090 TTCCCTCTTC
*
36306100 TTCTTCTTT-TTTTTCT
1 TTCTTCTTTCCTTTTCT
*
36306116 GTTCTCCTTTCCTTTTCT
1 -TTCTTCTTTCCTTTTCT
36306134 TTCTTTCTTT-C-TTTCT
1 TTC-TTCTTTCCTTTTCT
* *
36306150 TTTTTCTTCTCCTTTCCTT
1 TTCTTCTT-TCCTTTTC-T
36306169 TTCTTC-TT-C-TTTCT
1 TTCTTCTTTCCTTTTCT
*
36306183 TTCTT-TTT--TTCTC-
1 TTCTTCTTTCCTTTTCT
*
36306196 TTCTCCTTTCCTTTTCT
1 TTCTTCTTTCCTTTTCT
*
36306213 TTCCTTCTTT-TTCTTTCT
1 TT-CTTCTTTCCT-TTTCT
* *
36306231 TTCCTCTCCTTCC-TTCCT
1 TT-CT-TCTTTCCTTTTCT
36306249 TTCTTTCTTT-C-TTTCT
1 TTC-TTCTTTCCTTTTCT
36306265 TTCTTTCTTTC
1 TTC-TTCTTTC
36306276 TTTCCCTCTC
Statistics
Matches: 124, Mismatches: 17, Indels: 36
0.70 0.10 0.20
Matches are distributed among these distances:
13 4 0.03
14 14 0.11
15 8 0.06
16 28 0.23
17 22 0.18
18 38 0.31
19 10 0.08
ACGTcount: A:0.00, C:0.30, G:0.01, T:0.69
Consensus pattern (17 bp):
TTCTTCTTTCCTTTTCT
Found at i:36306138 original size:4 final size:4
Alignment explanation
Indices: 36306129--36306279 Score: 125
Period size: 4 Copynumber: 37.0 Consensus size: 4
36306119 CTCCTTTCCT
36306129 TTTC TTTC TTTC TTTC TTTC TTT- TTTC TTCTCC TTTCC TTT- TCTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT-T-C TTT-C TTTC T-TTC
* * *
36306175 -TTC TTTC TTTC TTTT TTTC TCTTC -TCC TTTCC TTTTC TTTC CTTC -TT-
1 TTTC TTTC TTTC TTTC TTTC T-TTC TTTC TTT-C -TTTC TTTC TTTC TTTC
* * *
36306222 TTTC TTTC TTTCC TCTCC TTCC TTCC TTTC TTTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTT-C T-TTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
36306272 TTTC TTTC
1 TTTC TTTC
36306280 CCTCTCCTTC
Statistics
Matches: 126, Mismatches: 7, Indels: 28
0.78 0.04 0.17
Matches are distributed among these distances:
3 13 0.10
4 90 0.71
5 16 0.13
6 7 0.06
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (4 bp):
TTTC
Found at i:36306138 original size:34 final size:34
Alignment explanation
Indices: 36306063--36306230 Score: 139
Period size: 39 Copynumber: 4.7 Consensus size: 34
36306053 AAAAAAATTA
* *
36306063 CCTTTT-TTT-TTCTTTTTTTT-TCCT-TCCTTC
1 CCTTTTCTTTCTTCTTTTTTTTCTCTTCTCCTTT
* *
36306093 CCTCTTC-TTCTTCTTTTTTTTCTGTTCTCCTTT
1 CCTTTTCTTTCTTCTTTTTTTTCTCTTCTCCTTT
*
36306126 CCTTTTCTTTCTTTCTTTCTTTCTTTTTTCTTCTCCTTT
1 CCTTTTCTTTC-TTC--T-TTT-TTTTCTCTTCTCCTTT
36306165 CCTTTTCTTCTTCTTTCTTTCTTTTTTTCTCTTCTCCTTT
1 CCTTTTC-T-TTC-TTC--T-TTTTTTTCTCTTCTCCTTT
36306205 CCTTTTCTTTCCTTCTTTTTCTTTCT
1 CCTTTTCTTT-CTTCTTTTT-TTTCT
36306231 TTCCTCTCCT
Statistics
Matches: 116, Mismatches: 8, Indels: 22
0.79 0.05 0.15
Matches are distributed among these distances:
30 7 0.06
31 11 0.09
32 2 0.02
33 11 0.09
34 3 0.03
35 7 0.06
36 6 0.05
37 1 0.01
38 8 0.07
39 23 0.20
40 23 0.20
41 14 0.12
ACGTcount: A:0.00, C:0.29, G:0.01, T:0.70
Consensus pattern (34 bp):
CCTTTTCTTTCTTCTTTTTTTTCTCTTCTCCTTT
Found at i:36306153 original size:40 final size:40
Alignment explanation
Indices: 36306103--36306270 Score: 206
Period size: 39 Copynumber: 4.2 Consensus size: 40
36306093 CCTCTTCTTC
*
36306103 TTCTTT-TTTTTCTGTTCTCCTTTCCTTTTCTTTCTTTCT
1 TTCTTTCTTTTTCTCTTCTCCTTTCCTTTTCTTTCTTTCT
36306142 TTCTTTCTTTTT-TCTTCTCCTTTCCTTTTC-TTC-TTCT
1 TTCTTTCTTTTTCTCTTCTCCTTTCCTTTTCTTTCTTTCT
*
36306179 TTCTTTCTTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTTT
1 TTCTTTC--TTTTTCTCTTCTCCTTTCCTTTTCTTT-CTT-TCT
* *
36306223 TTCTTTC-TTTCCTCTCCTTCC-TTCC-TTTCTTTCTTTCT
1 TTCTTTCTTTTTCTCTTC-TCCTTTCCTTTTCTTTCTTTCT
36306261 TTCTTTCTTT
1 TTCTTTCTTT
36306271 CTTTCTTTCC
Statistics
Matches: 114, Mismatches: 5, Indels: 20
0.82 0.04 0.14
Matches are distributed among these distances:
37 11 0.10
38 12 0.11
39 33 0.29
40 30 0.26
41 14 0.12
42 4 0.04
43 1 0.01
44 9 0.08
ACGTcount: A:0.00, C:0.30, G:0.01, T:0.70
Consensus pattern (40 bp):
TTCTTTCTTTTTCTCTTCTCCTTTCCTTTTCTTTCTTTCT
Found at i:36306349 original size:27 final size:27
Alignment explanation
Indices: 36306319--36306388 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
36306309 CCCTATTATA
36306319 CATTGGTGCCGCCAATGG-TATTGGCAC
1 CATTGGTGCCGCCAATGGCT-TTGGCAC
*
36306346 CATTGGTGCTGCCAATGGCTTTGGCAC
1 CATTGGTGCCGCCAATGGCTTTGGCAC
*
36306373 CTTTGGTGCCGCCAAT
1 CATTGGTGCCGCCAAT
36306389 ACCATTGGCG
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
27 38 0.97
28 1 0.03
ACGTcount: A:0.16, C:0.27, G:0.29, T:0.29
Consensus pattern (27 bp):
CATTGGTGCCGCCAATGGCTTTGGCAC
Found at i:36306396 original size:27 final size:27
Alignment explanation
Indices: 36306319--36306397 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
36306309 CCCTATTATA
*
36306319 CATTGGTGCCGCCAATGGTATTGGCAC
1 CATTGGTGCCGCCAATGGCATTGGCAC
* *
36306346 CATTGGTGCTGCCAATGGCTTTGGCAC
1 CATTGGTGCCGCCAATGGCATTGGCAC
* **
36306373 CTTTGGTGCCGCCAATACCATTGGC
1 CATTGGTGCCGCCAATGGCATTGGC
36306398 GTGACCAGTG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.16, C:0.28, G:0.28, T:0.28
Consensus pattern (27 bp):
CATTGGTGCCGCCAATGGCATTGGCAC
Found at i:36306485 original size:24 final size:25
Alignment explanation
Indices: 36306455--36306502 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
36306445 TTTTGTTTTT
36306455 TATATA-TTTTGGTAAATAAAAATA
1 TATATATTTTTGGTAAATAAAAATA
36306479 TATATATTTTTTGGTAAATAAAAA
1 TATATA-TTTTTGGTAAATAAAAA
36306503 AAAGTTATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 6 0.27
26 16 0.73
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (25 bp):
TATATATTTTTGGTAAATAAAAATA
Found at i:36306793 original size:40 final size:40
Alignment explanation
Indices: 36306747--36306852 Score: 151
Period size: 40 Copynumber: 2.6 Consensus size: 40
36306737 ATGATGTTTT
* * * *
36306747 GCGGCGTTTTTCAGAAAGCGCCGCTATTTCTTGATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTATTGCTCGACCTATA
*
36306787 GTGGCGTTTCTT-AAAAAGCGCCGCTATTGCTCGACCTATA
1 GCGGCGTTT-TTCAAAAAGCGCCGCTATTGCTCGACCTATA
36306827 GCGGCGTTTTTCAAAAAGCGCCGCTA
1 GCGGCGTTTTTCAAAAAGCGCCGCTA
36306853 ATGCCTCTAA
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
39 2 0.03
40 54 0.93
41 2 0.03
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.30
Consensus pattern (40 bp):
GCGGCGTTTTTCAAAAAGCGCCGCTATTGCTCGACCTATA
Found at i:36306953 original size:40 final size:38
Alignment explanation
Indices: 36306893--36307126 Score: 198
Period size: 40 Copynumber: 5.9 Consensus size: 38
36306883 TTTGCGGCAA
* *
36306893 TTTTAAAAAAGAGCCACTAATGCTCGATCTATAGTGACG
1 TTTTTAAAAAGCGCCACTAATGCTCGATCTATAG-GACG
* * *
36306932 TTTATCAAAAAGCGCCGCTAATGCTCGATTCTATAGCAGCG
1 TTT-TTAAAAAGCGCCACTAATGCTCGA-TCTATAGGA-CG
* * * * *
36306973 ATTTTAAAAAAGTGCTACTAATGCTAGATCTATAGCAGCG
1 -TTTTTAAAAAGCGCCACTAATGCTCGATCTATAGGA-CG
* * ** *
36307013 TTTTTTAAAAGGCGTCGTTAATGCTCGATCTATAGCGGCG
1 -TTTTTAAAAAGCGCCACTAATGCTCGATCTATAG-GACG
* * *
36307053 TTTTTTAAAAAGCGCCGCTAATGCTCAATCTATAGCGGCG
1 -TTTTTAAAAAGCGCCACTAATGCTCGATCTATAG-GACG
* *
36307093 TTTTTAAAAAGCGTCACTAATGCTCGATTTATAG
1 TTTTTAAAAAGCGCCACTAATGCTCGATCTATAG
36307127 CGGCTTTTTA
Statistics
Matches: 162, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
39 33 0.20
40 98 0.60
41 28 0.17
42 3 0.02
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (38 bp):
TTTTTAAAAAGCGCCACTAATGCTCGATCTATAGGACG
Found at i:36307035 original size:81 final size:81
Alignment explanation
Indices: 36306892--36307127 Score: 275
Period size: 81 Copynumber: 3.0 Consensus size: 81
36306882 TTTTGCGGCA
* * * * *
36306892 ATTTTAAAAAAGAGCCACTAATGCTCGATCTATAG-TGACGTTTATCAAAAAGCGCCGCTAATGC
1 ATTTTAAAAAAGAGCCACTAATGCTAGATCTATAGCAG-CGTTTTTTAAAAAGCGTCGCTAATGC
36306956 TCGATTCTATAGCAGCG
65 TCGATTCTATAGCAGCG
* * * *
36306973 ATTTTAAAAAAGTGCTACTAATGCTAGATCTATAGCAGCGTTTTTTAAAAGGCGTCGTTAATGCT
1 ATTTTAAAAAAGAGCCACTAATGCTAGATCTATAGCAGCGTTTTTTAAAAAGCGTCGCTAATGCT
*
36307038 CGA-TCTATAGCGGCG
66 CGATTCTATAGCAGCG
* * * * * *
36307053 TTTTTTAAAAAGCGCCGCTAATGCTCA-ATCTATAGCGGCG-TTTTTAAAAAGCGTCACTAATGC
1 ATTTTAAAAAAGAGCCACTAATGCT-AGATCTATAGCAGCGTTTTTTAAAAAGCGTCGCTAATGC
36307116 TCGATT-TATAGC
65 TCGATTCTATAGC
36307128 GGCTTTTTAT
Statistics
Matches: 133, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
79 30 0.23
80 44 0.33
81 58 0.44
82 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (81 bp):
ATTTTAAAAAAGAGCCACTAATGCTAGATCTATAGCAGCGTTTTTTAAAAAGCGTCGCTAATGCT
CGATTCTATAGCAGCG
Found at i:36307150 original size:39 final size:38
Alignment explanation
Indices: 36306904--36307151 Score: 173
Period size: 40 Copynumber: 6.2 Consensus size: 38
36306894 TTTAAAAAAG
* * *
36306904 AGCCACTAATGCTCGATCTATAGTGACGTTTATCA-AAA
1 AGCCACTAATGCTCGATCTATAGCGGCGTTT-TTATAAA
* * * *
36306942 AGCGCCGCTAATGCTCGATTCTATAGCAGCGATTTTAAAAA
1 A--GCCACTAATGCTCGA-TCTATAGCGGCGTTTTTATAAA
* * *
36306983 AGTGCTACTAATGCTAGATCTATAGCAGCGTTTTT-TAAA
1 A--GCCACTAATGCTCGATCTATAGCGGCGTTTTTATAAA
**
36307022 AGGCGTCGTTAATGCTCGATCTATAGCGGCGTTTTT-TAAAA
1 A-GC--CACTAATGCTCGATCTATAGCGGCGTTTTTAT-AAA
* *
36307063 AGCGCCGCTAATGCTCAATCTATAGCGGCGTTTTTA-AAA
1 A--GCCACTAATGCTCGATCTATAGCGGCGTTTTTATAAA
*
36307102 AGCGTCACTAATGCTCGATTTATAGCGGC-TTTTTATCCAAA
1 AGC--CACTAATGCTCGATCTATAGCGGCGTTTTTAT--AAA
*
36307143 TGCCACTAA
1 AGCCACTAA
36307152 AAACCTATTT
Statistics
Matches: 171, Mismatches: 25, Indels: 27
0.77 0.11 0.12
Matches are distributed among these distances:
37 2 0.01
38 9 0.05
39 35 0.20
40 86 0.50
41 37 0.22
42 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (38 bp):
AGCCACTAATGCTCGATCTATAGCGGCGTTTTTATAAA
Found at i:36317318 original size:14 final size:17
Alignment explanation
Indices: 36317285--36317320 Score: 51
Period size: 14 Copynumber: 2.3 Consensus size: 17
36317275 ATAAAGTGTA
36317285 AAATAATTTGATATGTG
1 AAATAATTTGATATGTG
36317302 AAATAA-TTGA-A-GTG
1 AAATAATTTGATATGTG
36317316 AAATA
1 AAATA
36317321 TGGCAATGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 8 0.42
15 1 0.05
16 4 0.21
17 6 0.32
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (17 bp):
AAATAATTTGATATGTG
Done.