Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 124 of 205
Found at i:37172143 original size:282 final size:280
Alignment explanation
Indices: 37171609--37172163 Score: 1029
Period size: 282 Copynumber: 2.0 Consensus size: 280
37171599 GTAGGCTTTG
*
37171609 CTGCTACAAAAGAGTCATAGTTTAGAACAATATTTTCCAATGGAACATGCTAATTCTGCAGAATT
1 CTGCAACAAAAGAGTCATAGTTTAGAACAATATTTTCCAATGGAACATGCTAATTCTGCAGAATT
37171674 ATGCATAGATACCTGTTGGCAATCATCCTTTATCTGATTCAGTTTAATCCAGCAAATTTTGATAT
66 ATGCATAGATACCTGTTGGCAATCATCCTTTATCTGATTCAGTTTAATCCAGCAAATTTTGATAT
37171739 AGAGGGATTACTGATCACATCTGCAATTACAGTTAGAATTACATTATATTAAACTAAGAAAAAAC
131 AGAGGGATTACTGATCACATCTGCAATTACAGTTAGAATTACATTATATTAAACTAAGAAAAAAC
*
37171804 ACCACTTGTTTTATAAGATTACTAGCATTTCCTTAGAAGAATCATCGAGCACCTGCAGCCCCTCT
196 ACCACTTGTTTTATAAGATTACTAGCATCTCCTTAGAAGAATCATCGAGCACCTGCAGCCCCTCT
37171869 TTCTTGTTCAAGAATTACAT
261 TTCTTGTTCAAGAATTACAT
*
37171889 CTGCAACAAAAGGGTCATAGTTTAGAACAATATTTTCCAATGGAACATGCTAATTCTGCAGAATT
1 CTGCAACAAAAGAGTCATAGTTTAGAACAATATTTTCCAATGGAACATGCTAATTCTGCAGAATT
* *
37171954 ATGCATAGATACCTGTTGGTAATCATCCTTTATCTGATTTAGTTTAATCCAGCAAATTTTGATAG
66 ATGCATAGATACCTGTTGGCAATCATCCTTTATCTGATTCAGTTTAATCCAGCAAATTTTGATA-
* *
37172019 GTAGAGGGATTACTGATCACATCTGCAATTACAGTTAGTATTACATTATATTAAACTAAGCAAAA
130 -TAGAGGGATTACTGATCACATCTGCAATTACAGTTAGAATTACATTATATTAAACTAAGAAAAA
37172084 ACACCACTTGTTTTATAAGATTACTAGCATCTCCTTAGAAGAATCATCGAGCACCTGCAGCCCCT
194 ACACCACTTGTTTTATAAGATTACTAGCATCTCCTTAGAAGAATCATCGAGCACCTGCAGCCCCT
37172149 CTTTCTTGTTCAAGA
259 CTTTCTTGTTCAAGA
37172164 CCATTTTAGT
Statistics
Matches: 266, Mismatches: 7, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
280 125 0.47
282 141 0.53
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.33
Consensus pattern (280 bp):
CTGCAACAAAAGAGTCATAGTTTAGAACAATATTTTCCAATGGAACATGCTAATTCTGCAGAATT
ATGCATAGATACCTGTTGGCAATCATCCTTTATCTGATTCAGTTTAATCCAGCAAATTTTGATAT
AGAGGGATTACTGATCACATCTGCAATTACAGTTAGAATTACATTATATTAAACTAAGAAAAAAC
ACCACTTGTTTTATAAGATTACTAGCATCTCCTTAGAAGAATCATCGAGCACCTGCAGCCCCTCT
TTCTTGTTCAAGAATTACAT
Found at i:37176131 original size:7 final size:7
Alignment explanation
Indices: 37176119--37176171 Score: 61
Period size: 7 Copynumber: 7.4 Consensus size: 7
37176109 ATTTCTTGTC
37176119 ATTTTAA
1 ATTTTAA
37176126 ATTTTAA
1 ATTTTAA
**
37176133 ATTTTTT
1 ATTTTAA
* *
37176140 GTGTTATA
1 ATTTTA-A
37176148 ATTTTAA
1 ATTTTAA
37176155 ATTTTAA
1 ATTTTAA
37176162 ATTTTAA
1 ATTTTAA
37176169 ATT
1 ATT
37176172 ATAGTTTGTG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
7 33 0.89
8 4 0.11
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (7 bp):
ATTTTAA
Found at i:37176180 original size:39 final size:36
Alignment explanation
Indices: 37176119--37176198 Score: 124
Period size: 39 Copynumber: 2.1 Consensus size: 36
37176109 ATTTCTTGTC
37176119 ATTTTAAATTTTAAATTTTTTGTGTTATAATTTTAA
1 ATTTTAAATTTTAAATTTTTTGTGTTATAATTTTAA
37176155 ATTTTAAATTTTAAATTATAGTTTGTGTTATAATTTTAA
1 ATTTTAAATTTTAAATT-T--TTTGTGTTATAATTTTAA
*
37176194 TTTTT
1 ATTTT
37176199 TTGTGGTATG
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
36 17 0.43
37 1 0.03
39 22 0.55
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (36 bp):
ATTTTAAATTTTAAATTTTTTGTGTTATAATTTTAA
Found at i:37177784 original size:120 final size:120
Alignment explanation
Indices: 37177659--37178316 Score: 1217
Period size: 120 Copynumber: 5.5 Consensus size: 120
37177649 AATTATTTTA
* *
37177659 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTT
37177724 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
37177779 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTT
37177844 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
37177899 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTT
37177964 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
37178019 AATTTTATTAAATTATATGTTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTT
* *
37178084 ATAGTATCATATATTATTATTTGAGTAAATTCAAATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
37178139 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTT
*
37178204 ATAGTATCATATATTATTATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
37178259 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATATTTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
37178317 ATGATTAAAT
Statistics
Matches: 527, Mismatches: 10, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
120 521 0.99
121 6 0.01
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:37177934 original size:16 final size:16
Alignment explanation
Indices: 37177913--37177958 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
37177903 TTATTAAATT
37177913 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
37177929 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
37177944 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
37177959 CTTTTATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:37178133 original size:66 final size:66
Alignment explanation
Indices: 37178057--37178254 Score: 206
Period size: 66 Copynumber: 3.2 Consensus size: 66
37178047 TAATATATTT
*
37178057 AATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATTATTTGAGTAAATTCAAATAA
1 AATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATTATTTGAGTAAATTCATATAA
37178122 G
66 G
* * * * *
37178123 AATATTAATTA--TT-AA-GA-ATTTTATTA-AATTATATATT-TTAATT-A-T-AA-T-ATAT-
1 AATAATAATTATGTTAAATTATATTTTA-TAGTATCATATATTATTATTTGAGTAAATTCATATA
**
37178175 TT
65 AG
*
37178177 AATAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATTATTTGAGTAAATTCATATAA
1 AATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATTATTTGAGTAAATTCATATAA
37178242 G
66 G
*
37178243 AATATTAATTAT
1 AATAATAATTAT
37178255 TAAGAATTTT
Statistics
Matches: 101, Mismatches: 17, Indels: 28
0.69 0.12 0.19
Matches are distributed among these distances:
54 10 0.10
55 3 0.03
56 3 0.03
57 4 0.04
58 4 0.04
59 15 0.15
60 10 0.10
61 16 0.16
62 4 0.04
63 4 0.04
64 3 0.03
65 4 0.04
66 21 0.21
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (66 bp):
AATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATTATTTGAGTAAATTCATATAA
G
Found at i:37178174 original size:16 final size:16
Alignment explanation
Indices: 37178153--37178198 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
37178143 TTATTAAATT
37178153 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
37178169 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
37178184 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
37178199 CTTTTATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:37178553 original size:16 final size:16
Alignment explanation
Indices: 37178528--37178565 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
37178518 TTGATTTGCT
37178528 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
37178544 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
37178560 ATTACA
1 ATTACA
37178566 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.26, C:0.34, G:0.03, T:0.37
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:37188867 original size:13 final size:15
Alignment explanation
Indices: 37188845--37188876 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
37188835 TATCCTATTT
37188845 TATTATTAATTAAC-
1 TATTATTAATTAACA
37188859 TATTA-TAATTAACA
1 TATTATTAATTAACA
37188873 TATT
1 TATT
37188877 TCCATTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTATTAATTAACA
Found at i:37203353 original size:61 final size:61
Alignment explanation
Indices: 37203258--37203378 Score: 242
Period size: 61 Copynumber: 2.0 Consensus size: 61
37203248 TAGATACTGT
37203258 GAATATACAACCATATAGAGAAGGGTGTAATCAATGGTAAAGGTGTAAATAGACAAATATC
1 GAATATACAACCATATAGAGAAGGGTGTAATCAATGGTAAAGGTGTAAATAGACAAATATC
37203319 GAATATACAACCATATAGAGAAGGGTGTAATCAATGGTAAAGGTGTAAATAGACAAATAT
1 GAATATACAACCATATAGAGAAGGGTGTAATCAATGGTAAAGGTGTAAATAGACAAATAT
37203379 AGGATTGATT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.46, C:0.09, G:0.21, T:0.23
Consensus pattern (61 bp):
GAATATACAACCATATAGAGAAGGGTGTAATCAATGGTAAAGGTGTAAATAGACAAATATC
Found at i:37210269 original size:2 final size:2
Alignment explanation
Indices: 37210230--37210254 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
37210220 ATAGGACAAA
37210230 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
37210255 TTGTGTGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:37213120 original size:21 final size:22
Alignment explanation
Indices: 37213079--37213120 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
37213069 CAACGTTTAA
* *
37213079 TGTCGTGACATGGAGTGGTTGT
1 TGTCGCGACATCGAGTGGTTGT
37213101 TGTCGCGACATCGA-TGGTTG
1 TGTCGCGACATCGAGTGGTTG
37213121 AATGTTCCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.14, C:0.14, G:0.38, T:0.33
Consensus pattern (22 bp):
TGTCGCGACATCGAGTGGTTGT
Found at i:37213217 original size:71 final size:70
Alignment explanation
Indices: 37213049--37213225 Score: 178
Period size: 71 Copynumber: 2.5 Consensus size: 70
37213039 ATTGAACACC
* ** * * * * *
37213049 GAATGCTTCCCCTCTTGGTTCAACGTTTAATGTCGTGACATGGAGTGGTTGTTGTCGCGACATCG
1 GAATG-TTCCCCTCTTGGTTCAAAGTTGGATGTCATGACATAGAGTAGTGGTTGTCGCGACATCA
*
37213114 ATGGTT
65 ACGGTT
* * *
37213120 GAATGTTCCCCTTTTAGGTTCGAAGTTGGATGTCATGACATAGAGTAGTGGTTGTTGCGACATCA
1 GAATGTTCCCCTCTT-GGTTCAAAGTTGGATGTCATGACATAGAGTAGTGGTTGTCGCGACATCA
37213185 ACGGTT
65 ACGGTT
*
37213191 -ATTTGTTTCCCCTCTTGGTTCAAAGTTAGG-TGTCA
1 GA-ATG-TTCCCCTCTTGGTTCAAAGTT-GGATGTCA
37213226 CAAAATTCCC
Statistics
Matches: 87, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
70 10 0.11
71 66 0.76
72 11 0.13
ACGTcount: A:0.19, C:0.18, G:0.27, T:0.36
Consensus pattern (70 bp):
GAATGTTCCCCTCTTGGTTCAAAGTTGGATGTCATGACATAGAGTAGTGGTTGTCGCGACATCAA
CGGTT
Found at i:37216803 original size:59 final size:61
Alignment explanation
Indices: 37216732--37216848 Score: 148
Period size: 62 Copynumber: 1.9 Consensus size: 61
37216722 ATCACTTTGA
* * * * *
37216732 TATTAAATTAATATAATATTTA-T-CAGGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAAATAATAGAATATTTACTACAAGATAAACATTAAATTAAATTTAATATTAAATCT
* *
37216791 TATTAAAATAATAGAATCTTTATCTACAAGATAAACATTAAATTTAATTTAATATTAA
1 TATTAAAATAATAGAATATTTA-CTACAAGATAAACATTAAATTAAATTTAATATTAA
37216849 GATAATCACT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 19 0.40
61 1 0.02
62 28 0.58
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.42
Consensus pattern (61 bp):
TATTAAAATAATAGAATATTTACTACAAGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:37218448 original size:16 final size:16
Alignment explanation
Indices: 37218427--37218457 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37218417 CTATGCATAC
*
37218427 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
37218443 AAAATACAAAAGACA
1 AAAATACAAAAGACA
37218458 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:37220908 original size:35 final size:35
Alignment explanation
Indices: 37220843--37220938 Score: 88
Period size: 35 Copynumber: 2.7 Consensus size: 35
37220833 ATGTATATCG
* * **
37220843 TTTACATGGTGTCGCCCTG-AAGAGGTTATATACTA
1 TTTACATGGTGTCACTCTGAAAGA-CCTATATACTA
* * *
37220878 TTTACA-GAGTGTCACTCTGAAGGACCTATATATTG
1 TTTACATG-GTGTCACTCTGAAAGACCTATATACTA
*
37220913 TTTACATGGTGTCCCTCTGAAAGACC
1 TTTACATGGTGTCACTCTGAAAGACC
37220939 AATAGATAAC
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
34 1 0.02
35 44 0.90
36 4 0.08
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (35 bp):
TTTACATGGTGTCACTCTGAAAGACCTATATACTA
Found at i:37224382 original size:22 final size:24
Alignment explanation
Indices: 37224349--37224395 Score: 71
Period size: 22 Copynumber: 2.0 Consensus size: 24
37224339 TACTTGTATT
*
37224349 TCTATTTTATTTTTTTCA-TTATA
1 TCTATTTTATTTTTATCATTTATA
37224372 TCTA-TTTATTTTTATCATTTATA
1 TCTATTTTATTTTTATCATTTATA
37224395 T
1 T
37224396 AAATAATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.68
Consensus pattern (24 bp):
TCTATTTTATTTTTATCATTTATA
Found at i:37228042 original size:34 final size:34
Alignment explanation
Indices: 37227971--37228050 Score: 108
Period size: 34 Copynumber: 2.4 Consensus size: 34
37227961 ATGCCATTAG
*
37227971 CCATCCAGCACACCATAAGCTCGTATGATCCAAT
1 CCATCCAGCACACCATAAGCTCGTATAATCCAAT
* * *
37228005 CCATCTAGCACACCATATGCTCGTATAAGT-CAGT
1 CCATCCAGCACACCATAAGCTCGTATAA-TCCAAT
37228039 CCATCCAGCACA
1 CCATCCAGCACA
37228051 TTGTATCCAG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
34 39 0.98
35 1 0.03
ACGTcount: A:0.31, C:0.35, G:0.12, T:0.21
Consensus pattern (34 bp):
CCATCCAGCACACCATAAGCTCGTATAATCCAAT
Found at i:37228852 original size:29 final size:29
Alignment explanation
Indices: 37228818--37228874 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
37228808 AGCTAATACC
37228818 AATCCAAAAACATAAAAATTACTAAAAAG
1 AATCCAAAAACATAAAAATTACTAAAAAG
37228847 AATCCAAAAACATAAAAATTACTAAAAA
1 AATCCAAAAACATAAAAATTACTAAAAA
37228875 TGGGGCAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.67, C:0.14, G:0.02, T:0.18
Consensus pattern (29 bp):
AATCCAAAAACATAAAAATTACTAAAAAG
Found at i:37236340 original size:26 final size:26
Alignment explanation
Indices: 37236296--37236397 Score: 132
Period size: 26 Copynumber: 3.9 Consensus size: 26
37236286 AAGTATACTG
*
37236296 TACTGACAGCTTTGCTGCGATATTGT
1 TACTGGCAGCTTTGCTGCGATATTGT
* *
37236322 TACCGGCAGCTTTGTTGCGATATTGT
1 TACTGGCAGCTTTGCTGCGATATTGT
* * **
37236348 TACTGACAGCTTTGCTGCGATACTAC
1 TACTGGCAGCTTTGCTGCGATATTGT
*
37236374 TACTGGTAGCTTTGCTGCGATATT
1 TACTGGCAGCTTTGCTGCGATATT
37236398 AGTTTGTTAG
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 64 1.00
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.37
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGCGATATTGT
Found at i:37236353 original size:52 final size:52
Alignment explanation
Indices: 37236296--37236397 Score: 150
Period size: 52 Copynumber: 2.0 Consensus size: 52
37236286 AAGTATACTG
* ** *
37236296 TACTGACAGCTTTGCTGCGATATTGTTACCGGCAGCTTTGTTGCGATATTGT
1 TACTGACAGCTTTGCTGCGATACTACTACCGGCAGCTTTGCTGCGATATTGT
* *
37236348 TACTGACAGCTTTGCTGCGATACTACTACTGGTAGCTTTGCTGCGATATT
1 TACTGACAGCTTTGCTGCGATACTACTACCGGCAGCTTTGCTGCGATATT
37236398 AGTTTGTTAG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.37
Consensus pattern (52 bp):
TACTGACAGCTTTGCTGCGATACTACTACCGGCAGCTTTGCTGCGATATTGT
Found at i:37236533 original size:27 final size:27
Alignment explanation
Indices: 37236498--37236562 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
37236488 ATTGCACTGT
*
37236498 ACTGATACTGTATTAGGCTAAGGCCCAC
1 ACTG-TACTGTATTAGGCTAAGACCCAC
* *
37236526 A-TGTTACTGTATTGGGTTAAGACCCAC
1 ACTG-TACTGTATTAGGCTAAGACCCAC
37236553 ACTGTACTGT
1 ACTGTACTGT
37236563 TATTGAATAG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 29 0.91
28 3 0.09
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31
Consensus pattern (27 bp):
ACTGTACTGTATTAGGCTAAGACCCAC
Found at i:37237258 original size:27 final size:28
Alignment explanation
Indices: 37237228--37237291 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
37237218 CTATATAGTA
37237228 ACAGTAT-AATATGGGCCTTAGCCCAAT
1 ACAGTATCAATATGGGCCTTAGCCCAAT
* * *
37237255 ACAGTATCAGTGTGGGCTTTAGCCCAAT
1 ACAGTATCAATATGGGCCTTAGCCCAAT
37237283 ACAGTATCA
1 ACAGTATCA
37237292 GTACAATGCA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 7 0.21
28 26 0.79
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (28 bp):
ACAGTATCAATATGGGCCTTAGCCCAAT
Found at i:37237276 original size:28 final size:28
Alignment explanation
Indices: 37237239--37237293 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
37237229 CAGTATAATA
37237239 TGGGCCTTAGCCCAATACAGTATCAGTG
1 TGGGCCTTAGCCCAATACAGTATCAGTG
*
37237267 TGGGCTTTAGCCCAATACAGTATCAGT
1 TGGGCCTTAGCCCAATACAGTATCAGT
37237294 ACAATGCAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (28 bp):
TGGGCCTTAGCCCAATACAGTATCAGTG
Found at i:37237425 original size:26 final size:26
Alignment explanation
Indices: 37237396--37237475 Score: 81
Period size: 26 Copynumber: 3.1 Consensus size: 26
37237386 AACACACCAA
* *
37237396 TATCGTAGCAAATCTGCTAGTAATAG
1 TATCGCAGCAAAGCTGCTAGTAATAG
* *
37237422 TATCGCAGCAGAGCTG-TCAGTAACAG
1 TATCGCAGCAAAGCTGCT-AGTAATAG
* * *
37237448 TATCACAGCAAAGCTGCCAGTATTAG
1 TATCGCAGCAAAGCTGCTAGTAATAG
37237474 TA
1 TA
37237476 CAGTATACTT
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
25 1 0.02
26 42 0.98
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCTAGTAATAG
Found at i:37237666 original size:27 final size:27
Alignment explanation
Indices: 37237644--37238012 Score: 385
Period size: 27 Copynumber: 13.7 Consensus size: 27
37237634 TCTACCTTAT
*
37237644 GAGGGTATTTCAGTTATTTTACCCTAT-
1 GAGGGTATTTCAGTCATTTTACCCT-TC
* *
37237671 GCA-GGTATTTCAGTTATTTTGCCCTTC
1 G-AGGGTATTTCAGTCATTTTACCCTTC
* *
37237698 G-GGGTATTT-TGATCATTTTACCCTTA
1 GAGGGTATTTCAG-TCATTTTACCCTTC
**
37237724 GAGGGTATTTTGGTCATTTT-CCCTTC
1 GAGGGTATTTCAGTCATTTTACCCTTC
*
37237750 AAGGGTATTTC-GATCATTTTACCCTTC
1 GAGGGTATTTCAG-TCATTTTACCCTTC
* *
37237777 GAGGGTATTTCAGTTATTTTACCCTTT
1 GAGGGTATTTCAGTCATTTTACCCTTC
*
37237804 GAGGGTATTTCGGTCATTTTACCCTTC
1 GAGGGTATTTCAGTCATTTTACCCTTC
* *
37237831 GAAGGTATTTCAATCATTTTACCCTTC
1 GAGGGTATTTCAGTCATTTTACCCTTC
* *
37237858 GAGGATATTTAAGTCATTTTACCCTTC
1 GAGGGTATTTCAGTCATTTTACCCTTC
* ** *
37237885 GATGGTATTTTGGTCATTTTATCCTTC
1 GAGGGTATTTCAGTCATTTTACCCTTC
** * *
37237912 GAGGGTATTTTGGTTATTTTATCCTTC
1 GAGGGTATTTCAGTCATTTTACCCTTC
*
37237939 AAGGGTATTTC-GATCATTTTACCCTTC
1 GAGGGTATTTCAG-TCATTTTACCCTTC
*
37237966 AAGGGTATTTC-GATCATTTTACCCTTC
1 GAGGGTATTTCAG-TCATTTTACCCTTC
* *
37237993 AAGGGTATTTCGGTCATTTT
1 GAGGGTATTTCAGTCATTTT
37238013 CCCACGAATC
Statistics
Matches: 298, Mismatches: 33, Indels: 22
0.84 0.09 0.06
Matches are distributed among these distances:
25 2 0.01
26 42 0.14
27 250 0.84
28 4 0.01
ACGTcount: A:0.19, C:0.18, G:0.18, T:0.44
Consensus pattern (27 bp):
GAGGGTATTTCAGTCATTTTACCCTTC
Found at i:37244485 original size:34 final size:34
Alignment explanation
Indices: 37244428--37244528 Score: 97
Period size: 34 Copynumber: 3.1 Consensus size: 34
37244418 ATGAAACATG
* * * *
37244428 CAGTATTAGTCTGGGTCTAAGCCCAATACAATAA
1 CAGTATCAGTGTGGGCCTTAGCCCAATACAATAA
37244462 CAGTATCAGTGTGGGCCTTAG-CC----CAAT-A
1 CAGTATCAGTGTGGGCCTTAGCCCAATACAATAA
* * *
37244490 CAGTATCAGTGTGAGCCTTAGCCCAATACAGTAT
1 CAGTATCAGTGTGGGCCTTAGCCCAATACAATAA
37244524 CAGTA
1 CAGTA
37244529 CAATGCAGTA
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
28 21 0.39
29 6 0.11
33 5 0.09
34 22 0.41
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.26
Consensus pattern (34 bp):
CAGTATCAGTGTGGGCCTTAGCCCAATACAATAA
Found at i:37244497 original size:28 final size:28
Alignment explanation
Indices: 37244456--37244527 Score: 126
Period size: 28 Copynumber: 2.5 Consensus size: 28
37244446 AAGCCCAATA
*
37244456 CAATAACAGTATCAGTGTGGGCCTTAGCC
1 CAAT-ACAGTATCAGTGTGAGCCTTAGCC
37244485 CAATACAGTATCAGTGTGAGCCTTAGCC
1 CAATACAGTATCAGTGTGAGCCTTAGCC
37244513 CAATACAGTATCAGT
1 CAATACAGTATCAGT
37244528 ACAATGCAGT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 38 0.90
29 4 0.10
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.25
Consensus pattern (28 bp):
CAATACAGTATCAGTGTGAGCCTTAGCC
Found at i:37244664 original size:26 final size:26
Alignment explanation
Indices: 37244635--37244703 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 26
37244625 ACCAATATCG
* * *
37244635 CAGCAAAGTTGCCAGTAATAGTACCA
1 CAGCAAAGCTGCCAGTAACAATACCA
*
37244661 CAGCAAAGCTGCCAGTAACAATATCA
1 CAGCAAAGCTGCCAGTAACAATACCA
37244687 CAGCAAAGCTGCCAGTA
1 CAGCAAAGCTGCCAGTA
37244704 TCAGTATATG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.39, C:0.26, G:0.19, T:0.16
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGTAACAATACCA
Found at i:37244932 original size:27 final size:27
Alignment explanation
Indices: 37244902--37245268 Score: 335
Period size: 27 Copynumber: 13.6 Consensus size: 27
37244892 ACCCTATGGA
* *
37244902 GGTATTTCAGTTATTTTACTCTTC-AGG
1 GGTATTTCGGTTATTTTACCCTTCGA-G
*** * *
37244929 GGTATTTTAATCATTTTACCCTTTGAG
1 GGTATTTCGGTTATTTTACCCTTCGAG
* * * *
37244956 GGTATTTTGGTCATTTTACCCTTCAAA
1 GGTATTTCGGTTATTTTACCCTTCGAG
* * *
37244983 GGTATTTCGGTTACTTTACCTTTCGGG
1 GGTATTTCGGTTATTTTACCCTTCGAG
*
37245010 GGTATTTC-ATTCATTTTACCCTTCGAG
1 GGTATTTCGGTT-ATTTTACCCTTCGAG
* *
37245037 GGTATTTC-ATTCATTTTACCTTTCGAG
1 GGTATTTCGGTT-ATTTTACCCTTCGAG
*
37245064 GGTATTTCGGTTATTTTACCCTTCGAA
1 GGTATTTCGGTTATTTTACCCTTCGAG
* * *
37245091 GGTATTTTGATCATTTTACCCTTCGAG
1 GGTATTTCGGTTATTTTACCCTTCGAG
** *
37245118 GGTATTTAAGTTATTTTACCCTTTGAG
1 GGTATTTCGGTTATTTTACCCTTCGAG
* ** ** *
37245145 GGTATTTCGGTCAAATTATTCTTCAAG
1 GGTATTTCGGTTATTTTACCCTTCGAG
*
37245172 GGTATTTCGGTTATTTTATCCTTCGAG
1 GGTATTTCGGTTATTTTACCCTTCGAG
* * * *
37245199 GGTATTTCGGTCATTTTAACCTTCAAT
1 GGTATTTCGGTTATTTTACCCTTCGAG
* * *
37245226 GGTATCTCGGTCATTTTACCTTTCGAG
1 GGTATTTCGGTTATTTTACCCTTCGAG
*
37245253 GGTATTTCGGTCATTT
1 GGTATTTCGGTTATTT
37245269 GCCCATGAAT
Statistics
Matches: 279, Mismatches: 58, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
26 2 0.01
27 274 0.98
28 3 0.01
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.46
Consensus pattern (27 bp):
GGTATTTCGGTTATTTTACCCTTCGAG
Found at i:37250291 original size:21 final size:21
Alignment explanation
Indices: 37250267--37250307 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
37250257 CTTGGCATGT
*
37250267 AAGTCTCAATACTTAACCTAC
1 AAGTCTCAAGACTTAACCTAC
**
37250288 AAGTCTTGAGACTTAACCTA
1 AAGTCTCAAGACTTAACCTA
37250308 TTTATTGTAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (21 bp):
AAGTCTCAAGACTTAACCTAC
Found at i:37252899 original size:39 final size:39
Alignment explanation
Indices: 37252839--37252966 Score: 168
Period size: 39 Copynumber: 3.3 Consensus size: 39
37252829 TGAGCAATAC
* * * *
37252839 CTACTAAAATGTATGCGCTATCGTGTCATACCTACTAATT
1 CTACTAAAA-GTATGCTCTATCGAGCCATACCTACTGATT
37252879 CTACTAAAAGTATGCTCTATCGAGCCATACCTACTGA-T
1 CTACTAAAAGTATGCTCTATCGAGCCATACCTACTGATT
* * *
37252917 CTACTGAAAGTATGCTCTATCGAGCCATATCTACTGGTT
1 CTACTAAAAGTATGCTCTATCGAGCCATACCTACTGATT
*
37252956 CTACTGAAAGT
1 CTACTAAAAGT
37252967 TGTTCAAATG
Statistics
Matches: 80, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
38 35 0.44
39 36 0.45
40 9 0.11
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (39 bp):
CTACTAAAAGTATGCTCTATCGAGCCATACCTACTGATT
Found at i:37261563 original size:89 final size:90
Alignment explanation
Indices: 37261419--37261595 Score: 329
Period size: 89 Copynumber: 2.0 Consensus size: 90
37261409 GATTGTTCCC
*
37261419 AAATTATTTTTAAAGGACACGTAAGCTTGATTTAAGGCCCATAAATGAATGTATTACTTCGACCT
1 AAATTATTTTTAAAGGACACGTAAGCTTGATTTAAGGCCCATAAATGAATCTATTACTTCGACCT
37261484 AAATTATTATGAAATTTTGTTAACT
66 AAATTATTATGAAATTTTGTTAACT
*
37261509 AAATTATTTTT-AAGGCCACGTAAGCTTGATTTAAGGCCCATAAATGAATCTATTACTTCGACCT
1 AAATTATTTTTAAAGGACACGTAAGCTTGATTTAAGGCCCATAAATGAATCTATTACTTCGACCT
37261573 AAATTATTATGAAATTTTGTTAA
66 AAATTATTATGAAATTTTGTTAA
37261596 TTATATTGGC
Statistics
Matches: 85, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
89 74 0.87
90 11 0.13
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (90 bp):
AAATTATTTTTAAAGGACACGTAAGCTTGATTTAAGGCCCATAAATGAATCTATTACTTCGACCT
AAATTATTATGAAATTTTGTTAACT
Found at i:37264672 original size:18 final size:17
Alignment explanation
Indices: 37264649--37264729 Score: 60
Period size: 18 Copynumber: 4.6 Consensus size: 17
37264639 TTAAGGATTT
37264649 AAATCTAATTCAAACTTA
1 AAATCTAATT-AAACTTA
*
37264667 AAATCTAATTGAACTTAA
1 AAATCTAATTAAACTT-A
*
37264685 AAGATCTAAAATCTAAAGTTA
1 AA-ATCT--AAT-TAAACTTA
*
37264706 AAAT-T--TTAAACTTT
1 AAATCTAATTAAACTTA
37264720 AAATCTAATT
1 AAATCTAATT
37264730 GAAAGATCTA
Statistics
Matches: 50, Mismatches: 5, Indels: 17
0.69 0.07 0.24
Matches are distributed among these distances:
14 10 0.20
15 2 0.04
17 7 0.14
18 13 0.26
19 5 0.10
20 2 0.04
21 6 0.12
22 5 0.10
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.36
Consensus pattern (17 bp):
AAATCTAATTAAACTTA
Found at i:37268005 original size:17 final size:18
Alignment explanation
Indices: 37267973--37268006 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37267963 TCTCAGATGA
*
37267973 GCTTTTCCATTAAAAAGT
1 GCTTTTCCACTAAAAAGT
37267991 GCTTTTCC-CTAAAAAG
1 GCTTTTCCACTAAAAAG
37268007 CAATAAAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (18 bp):
GCTTTTCCACTAAAAAGT
Found at i:37268296 original size:21 final size:19
Alignment explanation
Indices: 37268270--37268342 Score: 65
Period size: 21 Copynumber: 3.6 Consensus size: 19
37268260 ATCTAATTAC
37268270 AAATATTTAATTATTATATTT
1 AAATATTTAATTA-TAT-TTT
*
37268291 AAATATTTAAATATATTTT
1 AAATATTTAATTATATTTT
* *
37268310 ATATATTATAATTAAATTTAAT
1 AAATATT-TAATTATATTT--T
*
37268332 AAATAATTAAT
1 AAATATTTAAT
37268343 ATTAATTACT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 9 0.21
20 12 0.28
21 16 0.37
22 6 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AAATATTTAATTATATTTT
Found at i:37268585 original size:13 final size:13
Alignment explanation
Indices: 37268559--37268591 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
37268549 CACTCAAATT
*
37268559 TTCT-AAAAGTAC
1 TTCTCAAAAGCAC
37268571 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
37268584 TTCTCAAA
1 TTCTCAAA
37268592 GTCACTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.30
Consensus pattern (13 bp):
TTCTCAAAAGCAC
Found at i:37268610 original size:13 final size:13
Alignment explanation
Indices: 37268594--37268627 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
37268584 TTCTCAAAGT
*
37268594 CACTTTTCCATAG
1 CACTTTTCCACAG
37268607 CACTTTTCCACAG
1 CACTTTTCCACAG
*
37268620 CACATTTC
1 CACTTTTC
37268628 AAAAGTATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.24, C:0.35, G:0.06, T:0.35
Consensus pattern (13 bp):
CACTTTTCCACAG
Found at i:37277796 original size:19 final size:19
Alignment explanation
Indices: 37277768--37277811 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
37277758 GCAAAATAAA
*
37277768 TTTTAAAAA-TATTAAAAT
1 TTTTAAAAATTATAAAAAT
37277786 TTTTGAAAAATTATAAAAAT
1 TTTT-AAAAATTATAAAAAT
37277806 TATTTA
1 T-TTTA
37277812 TTTAATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 4 0.18
19 5 0.23
20 10 0.45
21 3 0.14
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
TTTTAAAAATTATAAAAAT
Found at i:37279179 original size:20 final size:18
Alignment explanation
Indices: 37279133--37279181 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 18
37279123 GCAGCGAAAC
37279133 TTAAAAACAATTAAAAAAT
1 TTAAAAA-AATTAAAAAAT
*
37279152 TT-AAAAAATTCATAAAATT
1 TTAAAAAAATT-A-AAAAAT
37279171 TTAAAAAAATT
1 TTAAAAAAATT
37279182 GTTGGTTTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 4 0.15
18 5 0.19
19 9 0.35
20 8 0.31
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (18 bp):
TTAAAAAAATTAAAAAAT
Found at i:37279751 original size:29 final size:28
Alignment explanation
Indices: 37279719--37279776 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
37279709 TTCATTAAAA
37279719 ATATAAAAAAATCT-TTGAAAATTTTACAT
1 ATATAAAAAAAT-TATTGAAAATTTT-CAT
* *
37279748 ATATAATAAAATTATTTAAAATTTTCAT
1 ATATAAAAAAATTATTGAAAATTTTCAT
37279776 A
1 A
37279777 AAATTTTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 5 0.19
29 21 0.81
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (28 bp):
ATATAAAAAAATTATTGAAAATTTTCAT
Found at i:37279798 original size:19 final size:19
Alignment explanation
Indices: 37279762--37279797 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
37279752 AATAAAATTA
37279762 TTTAAAATTTTCATAAAAT
1 TTTAAAATTTTCATAAAAT
*
37279781 TTTAAGATTTTC-TAAAA
1 TTTAAAATTTTCATAAAA
37279798 ACCTAGAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (19 bp):
TTTAAAATTTTCATAAAAT
Found at i:37283178 original size:22 final size:21
Alignment explanation
Indices: 37283148--37283221 Score: 67
Period size: 22 Copynumber: 3.4 Consensus size: 21
37283138 TTGTACAAGT
* *
37283148 TTAGTACTTTTGTCCTCTCTG
1 TTAGCACTTTTGTGCTCTCTG
** *
37283169 TTCAGCACTTCGGTGCTCTCTAC
1 TT-AGCACTTTTGTGCTCTCT-G
*
37283192 TTAGCACTCTTGTGCTCTCTG
1 TTAGCACTTTTGTGCTCTCTG
37283213 TTTAGCACT
1 -TTAGCACT
37283222 ACAATGCTCT
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
21 2 0.05
22 37 0.90
23 2 0.05
ACGTcount: A:0.12, C:0.28, G:0.16, T:0.43
Consensus pattern (21 bp):
TTAGCACTTTTGTGCTCTCTG
Found at i:37283230 original size:44 final size:44
Alignment explanation
Indices: 37283148--37283231 Score: 105
Period size: 44 Copynumber: 1.9 Consensus size: 44
37283138 TTGTACAAGT
* * * **
37283148 TTAGTACTTTTGTCCTCTCTGTTCAGCACTTCGGTGCTCTCTAC
1 TTAGCACTCTTGTCCTCTCTGTTCAGCACTACAATGCTCTCTAC
* *
37283192 TTAGCACTCTTGTGCTCTCTGTTTAGCACTACAATGCTCT
1 TTAGCACTCTTGTCCTCTCTGTTCAGCACTACAATGCTCT
37283232 TTAGTGTGGT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
44 33 1.00
ACGTcount: A:0.14, C:0.29, G:0.15, T:0.42
Consensus pattern (44 bp):
TTAGCACTCTTGTCCTCTCTGTTCAGCACTACAATGCTCTCTAC
Found at i:37284037 original size:30 final size:30
Alignment explanation
Indices: 37284003--37284069 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
37283993 TTTAGTTGCC
37284003 TGATTGGCCCGTTATACACGTGGCACAATA
1 TGATTGGCCCGTTATACACGTGGCACAATA
** * * *
37284033 TGATTGGCCTTTTATATACGTGGCATAATC
1 TGATTGGCCCGTTATACACGTGGCACAATA
37284063 TGATTGG
1 TGATTGG
37284070 TAGAAATTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (30 bp):
TGATTGGCCCGTTATACACGTGGCACAATA
Found at i:37286935 original size:30 final size:31
Alignment explanation
Indices: 37286887--37286946 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
37286877 AAATCTTTTA
*
37286887 TTTTCGCCCAAAATTTTTACTC-CTTCCCAC
1 TTTTCGCCCAAAACTTTTACTCACTTCCCAC
* * *
37286917 TTTTCTCCTAAAACTTTTATTCACTTCCCA
1 TTTTCGCCCAAAACTTTTACTCACTTCCCA
37286947 TCCCACCTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 18 0.72
31 7 0.28
ACGTcount: A:0.22, C:0.33, G:0.02, T:0.43
Consensus pattern (31 bp):
TTTTCGCCCAAAACTTTTACTCACTTCCCAC
Found at i:37287708 original size:5 final size:5
Alignment explanation
Indices: 37287698--37287728 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
37287688 CTCGAAAATT
37287698 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA T
37287729 CGAATGCTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:37292659 original size:50 final size:50
Alignment explanation
Indices: 37292558--37292886 Score: 329
Period size: 50 Copynumber: 6.5 Consensus size: 50
37292548 GGGAATGAGA
* * * * **
37292558 TCCCATGTAATACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATATAAGACCATGTCTGGGACATGGCATGGGCA-C----CGA-TATGAGAAC
37292614 TCCCATATAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATATAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
* * * * * **
37292664 TTCCATATAAGACCA-GTCTGGGACTTGGCGTTGGCACCGAGATGAGAGG
1 TCCCATATAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
***
37292713 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATATAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
* * * * **
37292763 TCCCATATAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGG
1 TCCCATATAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
* * * *
37292813 TCCC-TCATAAGACCATGTCTGGGATATGACATGGACATCGATATGAGAAC
1 TCCCAT-ATAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
* *
37292863 TCCCATGTAAGACCATATCTGGGA
1 TCCCATATAAGACCATGTCTGGGA
37292887 TATGACATTG
Statistics
Matches: 226, Mismatches: 44, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
49 40 0.18
50 148 0.65
51 3 0.01
55 1 0.00
56 34 0.15
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.22
Consensus pattern (50 bp):
TCCCATATAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
Found at i:37292846 original size:100 final size:100
Alignment explanation
Indices: 37292558--37292886 Score: 446
Period size: 100 Copynumber: 3.2 Consensus size: 100
37292548 GGGAATGAGA
* * * *
37292558 TCCCATGTAATACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCCCAT-AT
1 TCCCATATAAGACCATGTCTGGGACATGGCGTTGGCACCA---AG---ATGAGAGGTCCC-TCAT
37292622 AAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
59 AAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
* * * * *
37292664 TTCCATATAAGACCA-GTCTGGGACTTGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCA
1 TCCCATATAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGTCCCTCATAAGACCA
37292728 TGTCTGGGACATGGCATGGGCACCGATATGAGAAC
66 TGTCTGGGACATGGCATGGGCACCGATATGAGAAC
37292763 TCCCATATAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGTCCCTCATAAGACCA
1 TCCCATATAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGTCCCTCATAAGACCA
* * * *
37292828 TGTCTGGGATATGACATGGACATCGATATGAGAAC
66 TGTCTGGGACATGGCATGGGCACCGATATGAGAAC
* *
37292863 TCCCATGTAAGACCATATCTGGGA
1 TCCCATATAAGACCATGTCTGGGA
37292887 TATGACATTG
Statistics
Matches: 201, Mismatches: 20, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
99 69 0.34
100 98 0.49
102 2 0.01
105 20 0.10
106 12 0.06
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.22
Consensus pattern (100 bp):
TCCCATATAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGTCCCTCATAAGACCA
TGTCTGGGACATGGCATGGGCACCGATATGAGAAC
Found at i:37292887 original size:50 final size:49
Alignment explanation
Indices: 37292605--37292938 Score: 307
Period size: 50 Copynumber: 6.7 Consensus size: 49
37292595 TCATTGAGAT
**
37292605 TATGAGAGGTCCCATATAAGACCATGTCTGGGACATGGCATGGGCACCGA
1 TATGAGAACTCCCATATAAGACCATGTCTGGGACATGGCAT-GGCACCGA
* * *
37292655 TATGAGAACTTCCATATAAGACCA-GTCTGGGACTTGGCGTTGGCACCGA
1 TATGAGAACTCCCATATAAGACCATGTCTGGGACATGGC-ATGGCACCGA
* ** ***
37292704 GATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
1 TATGAGAACTCCCATATAAGACCATGTCTGGGACATGGCAT-GGCACCGA
* *
37292754 TATGAGAACTCCCATATAAGACCATGTCTGGGACATGGCGTTGGCACCAA
1 TATGAGAACTCCCATATAAGACCATGTCTGGGACATGGC-ATGGCACCGA
* ** * * *
37292804 GATGAGAGGTCCC-TCATAAGACCATGTCTGGGATATGACATGGACATCGA
1 TATGAGAACTCCCAT-ATAAGACCATGTCTGGGACATGGCATGG-CACCGA
* * * * * *
37292854 TATGAGAACTCCCATGTAAGACCATATCTGGGATATGACATTG-ACAG-
1 TATGAGAACTCCCATATAAGACCATGTCTGGGACATGGCATGGCACCGA
* * * *
37292901 TACAGAAAACATCCCATGTAAGACTATGTCTGGGACAT
1 TA-TGAGAAC-TCCCATATAAGACCATGTCTGGGACAT
37292939 AACTTTGGCA
Statistics
Matches: 232, Mismatches: 43, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
47 2 0.01
48 7 0.03
49 67 0.29
50 154 0.66
51 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (49 bp):
TATGAGAACTCCCATATAAGACCATGTCTGGGACATGGCATGGCACCGA
Found at i:37299419 original size:40 final size:40
Alignment explanation
Indices: 37299330--37299593 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
37299320 TTGAATGATG
* *
37299330 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
37299369 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
37299409 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37299448 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37299488 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37299528 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37299569 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37299594 AACGAGGAGC
Statistics
Matches: 205, Mismatches: 13, Indels: 13
0.89 0.06 0.06
Matches are distributed among these distances:
39 53 0.26
40 142 0.69
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37299611 original size:120 final size:118
Alignment explanation
Indices: 37299330--37299626 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
37299320 TTGAATGATG
* *
37299330 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
37299390 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACTAAA
* ** * *
37299448 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
37299513 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACTA-AA
* * *
37299569 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
37299627 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACTAAA
Found at i:37303429 original size:8 final size:8
Alignment explanation
Indices: 37303416--37303471 Score: 50
Period size: 7 Copynumber: 7.5 Consensus size: 8
37303406 AGGAGGGCAT
37303416 GATTGAAA
1 GATTGAAA
37303424 GATTG-AA
1 GATTGAAA
*
37303431 GATTTAAA
1 GATTGAAA
37303439 G-TTGAATA
1 GATTGAA-A
37303447 GA-T-AAA
1 GATTGAAA
*
37303453 GATTGAAG
1 GATTGAAA
37303461 GATTG-AA
1 GATTGAAA
37303468 GATT
1 GATT
37303472 TAAAAAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
6 3 0.08
7 18 0.46
8 18 0.46
ACGTcount: A:0.45, C:0.00, G:0.25, T:0.30
Consensus pattern (8 bp):
GATTGAAA
Found at i:37307101 original size:96 final size:96
Alignment explanation
Indices: 37306916--37307090 Score: 246
Period size: 96 Copynumber: 1.8 Consensus size: 96
37306906 AGAGGAGTAC
* * * * * *
37306916 GATTGATCTCTCACCTGTTGTGAAGTGTTATTGGTGTAGTTCAAAAGATCATGAGGGTTTCCGAT
1 GATTGAGCTATCACCTGTTGTGAAGTGTTATTGGAGTAGTTCAAAAGATCATAAGAGTTTCCAAT
37306981 GTCTAATTAAATATCTAAATAGAGAGAATAA
66 GTCTAATTAAATATCTAAATAGAGAGAATAA
* *
37307012 GATTGAGCTATCACCTTTTGTGCAA-TGTTATTGGAGTAGTTCTAAAGATCATAAGAGTTTCCAA
1 GATTGAGCTATCACCTGTTGTG-AAGTGTTATTGGAGTAGTTCAAAAGATCATAAGAGTTTCCAA
37307076 TGTGC-AATTAAATAT
65 TGT-CTAATTAAATAT
37307091 TCAACAAGAG
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
96 66 0.96
97 3 0.04
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.35
Consensus pattern (96 bp):
GATTGAGCTATCACCTGTTGTGAAGTGTTATTGGAGTAGTTCAAAAGATCATAAGAGTTTCCAAT
GTCTAATTAAATATCTAAATAGAGAGAATAA
Found at i:37315746 original size:30 final size:30
Alignment explanation
Indices: 37315710--37315767 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
37315700 TGACATCACT
*
37315710 TATCTGTGATGGTCATTGAA-CTGACTAACC
1 TATCTGTGACGGTCATTGAATC-GACTAACC
37315740 TATCTGTGACGGTCATTGAATCGACTAA
1 TATCTGTGACGGTCATTGAATCGACTAA
37315768 AGGGGTGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (30 bp):
TATCTGTGACGGTCATTGAATCGACTAACC
Found at i:37316749 original size:278 final size:278
Alignment explanation
Indices: 37316252--37316803 Score: 1077
Period size: 278 Copynumber: 2.0 Consensus size: 278
37316242 ACTGCCTAAC
37316252 TGTTATTACTTTGATTGCGTGATAAACACTAGTTAAGCATAGAAGGATCCCAGCAGGATCATCAA
1 TGTTATTACTTTGATTGCGTGATAAACACTAGTTAAGCATAGAAGGATCCCAGCAGGATCATCAA
*
37316317 TATGGTGAGAACTACATACATAATTCATGTGTAATATTACGAAGATTATACCCTGAATCACTTCC
66 TATGGTGAAAACTACATACATAATTCATGTGTAATATTACGAAGATTATACCCTGAATCACTTCC
37316382 TCAAAAGTTTCTTCTCATTTCCTCTTCTTCTTCAACCAGAACAGTTGGATGATAACCGCAAAGCA
131 TCAAAAGTTTCTTCTCATTTCCTCTTCTTCTTCAACCAGAACAGTTGGATGATAACCGCAAAGCA
37316447 CCTTTCTTAGCATCAATAAATTTACTCGTCTAATAGATTTGACTTGCATATATATTACTACAATA
196 CCTTTCTTAGCATCAATAAATTTACTCGTCTAATAGATTTGACTTGCATATATATTACTACAATA
37316512 TTAGACTTTATTCTTAAG
261 TTAGACTTTATTCTTAAG
* *
37316530 TGTTATTGCTTTGATTGCGTGATAAACACTAGTTAAGCATAGAAGGATCCCAGCAGGATCTTCAA
1 TGTTATTACTTTGATTGCGTGATAAACACTAGTTAAGCATAGAAGGATCCCAGCAGGATCATCAA
37316595 TATGGTGAAAACTACATACATAATTCATGTGTAATATTACGAAGATTATACCCTGAATCACTTCC
66 TATGGTGAAAACTACATACATAATTCATGTGTAATATTACGAAGATTATACCCTGAATCACTTCC
37316660 TCAAAAGTTTCTTCTCATTTCCTCTTCTTCTTCAACCAGAACAGTTGGATGATAACCGCAAAGCA
131 TCAAAAGTTTCTTCTCATTTCCTCTTCTTCTTCAACCAGAACAGTTGGATGATAACCGCAAAGCA
37316725 CCTTTCTTAGCATCAATAAATTTACTCGTCTAATAGATTTGACTTGCATATATATTACTACAATA
196 CCTTTCTTAGCATCAATAAATTTACTCGTCTAATAGATTTGACTTGCATATATATTACTACAATA
37316790 TTAGACTTTATTCT
261 TTAGACTTTATTCT
37316804 CTTCAGCATT
Statistics
Matches: 271, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
278 271 1.00
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (278 bp):
TGTTATTACTTTGATTGCGTGATAAACACTAGTTAAGCATAGAAGGATCCCAGCAGGATCATCAA
TATGGTGAAAACTACATACATAATTCATGTGTAATATTACGAAGATTATACCCTGAATCACTTCC
TCAAAAGTTTCTTCTCATTTCCTCTTCTTCTTCAACCAGAACAGTTGGATGATAACCGCAAAGCA
CCTTTCTTAGCATCAATAAATTTACTCGTCTAATAGATTTGACTTGCATATATATTACTACAATA
TTAGACTTTATTCTTAAG
Found at i:37318293 original size:32 final size:32
Alignment explanation
Indices: 37318257--37318320 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
37318247 ACCTCTACAT
*
37318257 TAATGCTCAACTCAAGTTCGAATATTTTTAAC
1 TAATGCTCAACTCAAGTTCAAATATTTTTAAC
*
37318289 TAATGCTTAACTCAAGTTCAAATATTTTTAAC
1 TAATGCTCAACTCAAGTTCAAATATTTTTAAC
37318321 CTACCACTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.39
Consensus pattern (32 bp):
TAATGCTCAACTCAAGTTCAAATATTTTTAAC
Found at i:37321905 original size:29 final size:31
Alignment explanation
Indices: 37321848--37321906 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 31
37321838 TACTTCACGA
* *
37321848 TAAAAATATTAAATATATTAAAGATAAGTAG
1 TAAAAATATTAAATAAATTAAAGACAAGTAG
*
37321879 TAAAAA-A-TAAATAAATTAAAGCCAAGTA
1 TAAAAATATTAAATAAATTAAAGACAAGTA
37321907 AACTAGAGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 18 0.72
30 1 0.04
31 6 0.24
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.27
Consensus pattern (31 bp):
TAAAAATATTAAATAAATTAAAGACAAGTAG
Found at i:37322311 original size:180 final size:180
Alignment explanation
Indices: 37322009--37322370 Score: 654
Period size: 180 Copynumber: 2.0 Consensus size: 180
37321999 AAAGAGCATG
* * *
37322009 AAAACTGTGGAGTAAGAGTAGATTTAGTAACAATCATCTTCGCGTTGCTTCATTGCCATCCTTAC
1 AAAACTGTGGAATAAGAGTAGATTTAGTAACAATCATCTTCACCTTGCTTCATTGCCATCCTTAC
*
37322074 ATGAGGAGAGTTGAAAAATAAAGAAGAAAAAAACACTCTCACCAGAACCTTTTACGGATTTTACT
66 ATGAGGAGAGTTGAAAAATAAAGAAGAAAAAAACAATCTCACCAGAACCTTTTACGGATTTTACT
37322139 TAATAAATAGTAAACTTTTTACTTGATCTAATAAAC-AATCCTATAAATAT
131 TAATAAATAGTAAACTTTTTACTTGATCTAATAAACGAA-CCTATAAATAT
*
37322189 AAAACTGTGGAATAATAGTAGATTTAGTAACAATCATCTTCACCTTGCTTCATTGCCATCCTTAC
1 AAAACTGTGGAATAAGAGTAGATTTAGTAACAATCATCTTCACCTTGCTTCATTGCCATCCTTAC
*
37322254 ATGAGGAGAGTTGAAAAATAAAGAAGAAAAAAACAATCTCACCATAACCTTTTACGGATTTTACT
66 ATGAGGAGAGTTGAAAAATAAAGAAGAAAAAAACAATCTCACCAGAACCTTTTACGGATTTTACT
37322319 TAATAAATAGTAAACTTTTTACTTGATCTAATAAACGAACCTATAAATAT
131 TAATAAATAGTAAACTTTTTACTTGATCTAATAAACGAACCTATAAATAT
37322369 AA
1 AA
37322371 GAAATAACAG
Statistics
Matches: 175, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
180 173 0.99
181 2 0.01
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.31
Consensus pattern (180 bp):
AAAACTGTGGAATAAGAGTAGATTTAGTAACAATCATCTTCACCTTGCTTCATTGCCATCCTTAC
ATGAGGAGAGTTGAAAAATAAAGAAGAAAAAAACAATCTCACCAGAACCTTTTACGGATTTTACT
TAATAAATAGTAAACTTTTTACTTGATCTAATAAACGAACCTATAAATAT
Found at i:37324045 original size:20 final size:19
Alignment explanation
Indices: 37323991--37324049 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
37323981 TCTCAACAAA
*
37323991 TTATAAAAATGTTCAAAACAAT
1 TTAT-AAAAT-TTCAAAA-TAT
* *
37324013 TTTTAAAAATTCAAAATAT
1 TTATAAAATTTCAAAATAT
37324032 TTATAAAACTTTCAAAAT
1 TTATAAAA-TTTCAAAAT
37324050 TTATATATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
19 9 0.29
20 15 0.48
21 4 0.13
22 3 0.10
ACGTcount: A:0.53, C:0.08, G:0.02, T:0.37
Consensus pattern (19 bp):
TTATAAAATTTCAAAATAT
Found at i:37324086 original size:19 final size:19
Alignment explanation
Indices: 37324032--37324086 Score: 51
Period size: 18 Copynumber: 3.0 Consensus size: 19
37324022 TTCAAAATAT
* * *
37324032 TTATAA-AACTTTCAAAAT
1 TTATAATAATTTTAAAAAA
* *
37324050 TTAT-ATATTTTTTAAAAA
1 TTATAATAATTTTAAAAAA
37324068 TTATAATAATTTTAAAAAA
1 TTATAATAATTTTAAAAAA
37324087 AATTCTAAAG
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
17 1 0.03
18 16 0.55
19 12 0.41
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (19 bp):
TTATAATAATTTTAAAAAA
Found at i:37331453 original size:35 final size:35
Alignment explanation
Indices: 37331405--37331562 Score: 217
Period size: 35 Copynumber: 4.5 Consensus size: 35
37331395 TTATGGACTG
* *
37331405 GTCCTTTGGGGCGACACCATGTAAATGGTATACAT
1 GTCCTTCGGGGCGACACCGTGTAAATGGTATACAT
**
37331440 GTTGTTCGGGGCGACACCGTGTAAATGGTATACAT
1 GTCCTTCGGGGCGACACCGTGTAAATGGTATACAT
* *
37331475 GTCCTTTGGGGCGACACCGTGTAAACGGTATACAT
1 GTCCTTCGGGGCGACACCGTGTAAATGGTATACAT
* * *
37331510 GTCCTTTGGGGCGACACCGTATAAATGGCATACAT
1 GTCCTTCGGGGCGACACCGTGTAAATGGTATACAT
* *
37331545 GTCTTTCAGGGCGACACC
1 GTCCTTCGGGGCGACACC
37331563 TCAAAAGGGG
Statistics
Matches: 109, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 109 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (35 bp):
GTCCTTCGGGGCGACACCGTGTAAATGGTATACAT
Found at i:37336977 original size:29 final size:29
Alignment explanation
Indices: 37336935--37337062 Score: 195
Period size: 29 Copynumber: 4.4 Consensus size: 29
37336925 TTATTGACCA
*
37336935 ATGAAAAGGGATAGCTTCTA-CTATGGAAT
1 ATGAAAAGGGATAGCTTC-AGCTATCGAAT
37336964 ATGAAAAGGGATAGCTTCAGCTATCGAAT
1 ATGAAAAGGGATAGCTTCAGCTATCGAAT
* *
37336993 ATGAAAAGGGGTAGCTTCAGCTATTGAAT
1 ATGAAAAGGGATAGCTTCAGCTATCGAAT
* *
37337022 ATGAAAAGGGGTAGCTTCAGCTATCGATT
1 ATGAAAAGGGATAGCTTCAGCTATCGAAT
37337051 ATGAAAAGGGAT
1 ATGAAAAGGGAT
37337063 GTTGACGACC
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
28 1 0.01
29 91 0.99
ACGTcount: A:0.37, C:0.11, G:0.27, T:0.26
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCAGCTATCGAAT
Found at i:37337082 original size:29 final size:28
Alignment explanation
Indices: 37337050--37337220 Score: 110
Period size: 29 Copynumber: 5.9 Consensus size: 28
37337040 AGCTATCGAT
*
37337050 TATGAAAAGGGATGTTGACGACCATCAA
1 TATGAAAAGGGATGGTGACGACCATCAA
* *
37337078 CTATGAAAAGGGACGGTGATGACCATCGAA
1 -TATGAAAAGGGATGGTGACGACCATC-AA
* *** * * *
37337108 TTTGAGAAA-GGATAACGTCGACTATCGAT
1 TATGA-AAAGGGATGGTGACGACCATC-AA
* * *
37337137 TATGAAAAGGGATGGTGACGACGATTGAT
1 TATGAAAAGGGATGGTGACGACCA-TCAA
** *
37337166 TAATGAAAAGGGATGGTTTCAACCATCGAA
1 T-ATGAAAAGGGATGGTGACGACCATC-AA
* *
37337196 TATGAAAAGGGATGGTCACAACCAT
1 TATGAAAAGGGATGGTGACGACCAT
37337221 TGTTTAACAC
Statistics
Matches: 109, Mismatches: 27, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
28 3 0.03
29 79 0.72
30 27 0.25
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.22
Consensus pattern (28 bp):
TATGAAAAGGGATGGTGACGACCATCAA
Found at i:37337106 original size:58 final size:57
Alignment explanation
Indices: 37337044--37337207 Score: 145
Period size: 58 Copynumber: 2.8 Consensus size: 57
37337034 AGCTTCAGCT
* *
37337044 ATCGATTATGAAAAGGGATGTTGACGACCATCAACTATGAAAAGGGACGGTGATGACC
1 ATCGATTATGAAAAGGGATGTTGTCGACCATCAA-TATGAAAAGGGACGGTGACGACC
*** * * * *
37337102 ATCGAATT-TGAGAAA-GGATAACGTCGACTATCGATTATGAAAAGGGATGGTGACGACG
1 ATCG-ATTATGA-AAAGGGATGTTGTCGACCATC-AATATGAAAAGGGACGGTGACGACC
* *
37337160 ATTGATTAATGAAAAGGGATGGTT-TCAACCATCGAATATGAAAAGGGA
1 ATCGATT-ATGAAAAGGGAT-GTTGTCGACCATC-AATATGAAAAGGGA
37337208 TGGTCACAAC
Statistics
Matches: 83, Mismatches: 16, Indels: 13
0.74 0.14 0.12
Matches are distributed among these distances:
57 3 0.04
58 45 0.54
59 35 0.42
ACGTcount: A:0.38, C:0.12, G:0.27, T:0.23
Consensus pattern (57 bp):
ATCGATTATGAAAAGGGATGTTGTCGACCATCAATATGAAAAGGGACGGTGACGACC
Found at i:37337205 original size:87 final size:87
Alignment explanation
Indices: 37337042--37337205 Score: 215
Period size: 87 Copynumber: 1.9 Consensus size: 87
37337032 GTAGCTTCAG
* *
37337042 CTATCGATTATGAAAAGGGATGTTGACGACCATCAACTATGAAAAGGGACGGTGATGACCATCGA
1 CTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGACGGTGATAACCATCGA
*
37337107 ATTTGAGAAAGGATAACGTCGA
66 ATATGAGAAAGGATAACGTCGA
* ** * * *
37337129 CTATCGATTATGAAAAGGGATGGTGACGACGATTGATTAATGAAAAGGGATGGT-TTCAACCATC
1 CTATCGATTATGAAAAGGGATGGTGACGACCATCAACT-ATGAAAAGGGACGGTGAT-AACCATC
37337193 GAATATGA-AAAGG
64 GAATATGAGAAAGG
37337206 GATGGTCACA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
87 39 0.59
88 27 0.41
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (87 bp):
CTATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGACGGTGATAACCATCGA
ATATGAGAAAGGATAACGTCGA
Found at i:37340363 original size:21 final size:21
Alignment explanation
Indices: 37340323--37340368 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
37340313 GCCAAGATCG
*
37340323 TGTGGCTACCCCACATGCCCA
1 TGTGGCTACCCCACACGCCCA
* * *
37340344 TGTGGCTACCTCATACGCCCG
1 TGTGGCTACCCCACACGCCCA
37340365 TGTG
1 TGTG
37340369 CTCAAACAGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.15, C:0.37, G:0.24, T:0.24
Consensus pattern (21 bp):
TGTGGCTACCCCACACGCCCA
Found at i:37341199 original size:13 final size:13
Alignment explanation
Indices: 37341181--37341253 Score: 76
Period size: 13 Copynumber: 5.5 Consensus size: 13
37341171 GCATAGACAC
37341181 TTCATATAACCAT
1 TTCATATAACCAT
* *
37341194 TTCATATATCTAT
1 TTCATATAACCAT
37341207 TTCCATATAATCCA-
1 TT-CATATAA-CCAT
37341221 TTCATATAACCAT
1 TTCATATAACCAT
* * *
37341234 TTTATGTAATCAT
1 TTCATATAACCAT
37341247 TTCATAT
1 TTCATAT
37341254 TATAATTCAT
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
12 3 0.06
13 35 0.73
14 8 0.17
15 2 0.04
ACGTcount: A:0.34, C:0.19, G:0.01, T:0.45
Consensus pattern (13 bp):
TTCATATAACCAT
Found at i:37341235 original size:27 final size:27
Alignment explanation
Indices: 37341183--37341253 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 27
37341173 ATAGACACTT
* *
37341183 CATATAACCATTTCATATATCTATTTC
1 CATATAACCATTTCATATAACCATTTC
37341210 CATATAATCCA-TTCATATAACCATTT-
1 CATATAA-CCATTTCATATAACCATTTC
* * *
37341236 TATGTAATCATTTCATAT
1 CATATAACCATTTCATAT
37341254 TATAATTCAT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
25 2 0.05
26 12 0.32
27 20 0.54
28 3 0.08
ACGTcount: A:0.35, C:0.20, G:0.01, T:0.44
Consensus pattern (27 bp):
CATATAACCATTTCATATAACCATTTC
Found at i:37346323 original size:138 final size:138
Alignment explanation
Indices: 37346067--37346328 Score: 298
Period size: 138 Copynumber: 1.9 Consensus size: 138
37346057 AAAATGGGCT
* * * * ** *
37346067 TGCTTACACAAGCTATCGGTCGAAATGTAAGCTACATGATGTTGCTCACACAAGCTATTGAGTAT
1 TGCTTACACAAGCTATCGGTCGAAACGTAAGCTACACGATGCTACTCACACAAGCTATCAAGTAA
* * * * **
37346132 CCGCAACTAATGCTGGACCTTAGGCATCGGTAGGACATTCAAGACCAGTACCCGAAACATGGTAA
66 CCGCAACTAATGCTGAAACTTAGCCATCGGTAGGAAATTCAAGACCAACACCCGAAACATGGTAA
37346197 CCTGGGTC
131 CCTGGGTC
* * *
37346205 TGCTTACACAAGCTGTCGGTCGAAACGTAA-CTACACGGTGCTATTCACACAAGCTATCAAGTAA
1 TGCTTACACAAGCTATCGGTCGAAACGTAAGCTACACGATGCTACTCACACAAGCTATCAAGTAA
* *
37346269 CCGCAAC-ACAT-CTTGAAAACTTAGCCA-CTGGTAGGAAATTCAGGACTAACACCCGAAACA
66 CCGCAACTA-ATGC-TG-AAACTTAGCCATC-GGTAGGAAATTCAAGACCAACACCCGAAACA
37346329 CCGTAACCCT
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
136 2 0.02
137 38 0.37
138 62 0.61
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.22
Consensus pattern (138 bp):
TGCTTACACAAGCTATCGGTCGAAACGTAAGCTACACGATGCTACTCACACAAGCTATCAAGTAA
CCGCAACTAATGCTGAAACTTAGCCATCGGTAGGAAATTCAAGACCAACACCCGAAACATGGTAA
CCTGGGTC
Found at i:37355265 original size:19 final size:18
Alignment explanation
Indices: 37355233--37355268 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
37355223 TAAAGTAGTG
*
37355233 ATTTAGTAATTAAAAGAA
1 ATTTAGTAAATAAAAGAA
37355251 ATTTAAGTAAATAAAAGA
1 ATTT-AGTAAATAAAAGA
37355269 TGAAACAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.31
Consensus pattern (18 bp):
ATTTAGTAAATAAAAGAA
Found at i:37368555 original size:261 final size:260
Alignment explanation
Indices: 37368091--37368613 Score: 1028
Period size: 261 Copynumber: 2.0 Consensus size: 260
37368081 ACTAACACAT
37368091 TAGAATTGTGGTATCAAAACCACTGTTTCTGACACCAGTGAAAAACGAGTTGTTACAAAGTTCGT
1 TAGAATTGTGGTATCAAAACCACTGTTTCTGACACCAGTGAAAAACGAGTTGTTACAAAGTTCGT
37368156 ATAAACTTAGTGAGTTCCTTTAAAAGGTGGCAGATTCCACCTGATTCTTCAAGCTACTCAGCTAG
66 ATAAACTTAGTGAGTTCCTTTAAAAGGTGGCAGATTCCACCTGATTCTTCAAGCTACTCAGCTAG
37368221 CCATAAGACCATTCTCTAGTTTGACTCTCTACATGACAATACCCCATGTTATTTTTCTGTATCGA
131 CCATAAGACCATTCTCTAGTTTGACTCTCTACATGACAATACCCCATGTTATTTTTCTGTATCGA
37368286 CAAAACCTATCCTTATTTATCATTCTTCCCTTTCCTTATTACTCTTTCCCCTTACACAAGGTGTG
196 CAAAACCTATCCTTATTTATCATTCTTCCCTTTCCTTATTACTCTTTCCCCTTACACAAGGTGTG
37368351 NTAGAATTGTGGTATCAAAACCACTGTTTCTGACACCAGTGAAAAACGAGTTGTTACAAAGTTCG
1 -TAGAATTGTGGTATCAAAACCACTGTTTCTGACACCAGTGAAAAACGAGTTGTTACAAAGTTCG
37368416 TATAAACTTAGTGAGTTCCTTTAAAAGGTGGCAGATTCCACCTGATTCTTCAAGCTACTCAGCTA
65 TATAAACTTAGTGAGTTCCTTTAAAAGGTGGCAGATTCCACCTGATTCTTCAAGCTACTCAGCTA
37368481 GCCATAAGACCATTCTCTAGTTTGACTCTCTACATGACAATACCCCATGTTATTTTTCTGTATCG
130 GCCATAAGACCATTCTCTAGTTTGACTCTCTACATGACAATACCCCATGTTATTTTTCTGTATCG
*
37368546 ACAAAACCTATCCTTATTTATCATTCTTCCCTTTCCTTATTCCTCTTTCCCCTTACACAAGGTGT
195 ACAAAACCTATCCTTATTTATCATTCTTCCCTTTCCTTATTACTCTTTCCCCTTACACAAGGTGT
37368611 G
260 G
37368612 TA
1 TA
37368614 TTATCCCAAC
Statistics
Matches: 261, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
260 2 0.01
261 259 0.99
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.35
Consensus pattern (260 bp):
TAGAATTGTGGTATCAAAACCACTGTTTCTGACACCAGTGAAAAACGAGTTGTTACAAAGTTCGT
ATAAACTTAGTGAGTTCCTTTAAAAGGTGGCAGATTCCACCTGATTCTTCAAGCTACTCAGCTAG
CCATAAGACCATTCTCTAGTTTGACTCTCTACATGACAATACCCCATGTTATTTTTCTGTATCGA
CAAAACCTATCCTTATTTATCATTCTTCCCTTTCCTTATTACTCTTTCCCCTTACACAAGGTGTG
Found at i:37369591 original size:58 final size:56
Alignment explanation
Indices: 37369477--37369606 Score: 143
Period size: 58 Copynumber: 2.2 Consensus size: 56
37369467 TTTGTCAACT
* * * * * *
37369477 ATGGTCTTACACTGCATACCTTGTACCATTTACCTTGCTGCCATGGCATTTTTCATCC
1 ATGGTCTTACACT--ATACCTTGTACCATATACCATGCTGACATGACATCTCTCATCC
* *
37369535 ATGGTCTTACACTATTACCATTTTACCATATACCATGCTTACATGACATCTCTCATCC
1 ATGGTCTTACACTA-TACC-TTGTACCATATACCATGCTGACATGACATCTCTCATCC
*
37369593 GTGGTCTTACACTA
1 ATGGTCTTACACTA
37369607 CGTACCACAT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
56 1 0.02
57 4 0.07
58 56 0.92
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.37
Consensus pattern (56 bp):
ATGGTCTTACACTATACCTTGTACCATATACCATGCTGACATGACATCTCTCATCC
Found at i:37375892 original size:11 final size:11
Alignment explanation
Indices: 37375880--37375917 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
37375870 TGGTGGTCAT
*
37375880 AATTTGCTCAT
1 AATTTGCTCAA
37375891 AATTTGCTCAA
1 AATTTGCTCAA
37375902 AATTTGCTCAA
1 AATTTGCTCAA
37375913 AATTT
1 AATTT
37375918 AGGAGAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.42
Consensus pattern (11 bp):
AATTTGCTCAA
Found at i:37376256 original size:23 final size:24
Alignment explanation
Indices: 37376207--37376270 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 24
37376197 TGGTGAAAAA
37376207 AGGG-AAGAAAAAAGAGAGAAATGGAG
1 AGGGAAAG-AAAAA-AGAGAAA-GGAG
37376233 AGGGAAAGAAAAAAGAGAAA-GAG
1 AGGGAAAGAAAAAAGAGAAAGGAG
*
37376256 AGGAAAAAGAAAAAA
1 AGG-GAAAGAAAAAA
37376271 AAAGAAGAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
23 6 0.17
24 10 0.29
25 7 0.20
26 9 0.26
27 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.33, T:0.02
Consensus pattern (24 bp):
AGGGAAAGAAAAAAGAGAAAGGAG
Found at i:37376271 original size:25 final size:25
Alignment explanation
Indices: 37376211--37376276 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 25
37376201 GAAAAAAGGG
*
37376211 AAGAAAAAAGAGAGAAATGGAGAGGGA
1 AAGAAAAAA-AGAGAAA-GGAGAGGAA
37376238 AAG-AAAAAAGAGAAA-GAGAGGAAA
1 AAGAAAAAAAGAGAAAGGAGAGG-AA
*
37376262 AAGAAAAAAAAAGAA
1 AAGAAAAAAAGAGAA
37376277 GAAAAACTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
23 6 0.17
24 4 0.11
25 17 0.49
26 5 0.14
27 3 0.09
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.02
Consensus pattern (25 bp):
AAGAAAAAAAGAGAAAGGAGAGGAA
Found at i:37376453 original size:18 final size:17
Alignment explanation
Indices: 37376422--37376456 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
37376412 CTAGAATATA
*
37376422 TTTTTTTAACTTTTTAT
1 TTTTTTTAAATTTTTAT
37376439 TTTTTTTACAATTTTTAT
1 TTTTTTTA-AATTTTTAT
37376457 GGTTTCAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTTTAAATTTTTAT
Found at i:37377572 original size:15 final size:14
Alignment explanation
Indices: 37377549--37377584 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
37377539 ATCTACTAGC
*
37377549 TCTTTTTCTTTTTT
1 TCTTTTTCTATTTT
37377563 TCTATTTTCTATTTT
1 TCT-TTTTCTATTTT
37377578 TCTTTTT
1 TCTTTTT
37377585 ATAAAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.81
Consensus pattern (14 bp):
TCTTTTTCTATTTT
Found at i:37379924 original size:87 final size:86
Alignment explanation
Indices: 37379776--37379942 Score: 219
Period size: 87 Copynumber: 1.9 Consensus size: 86
37379766 AAATTTAAAT
* * * * * *
37379776 TCAATGAATACATCAAGTCCGTCTTAATAGGACCACCCAACCTCTGGGATATGAATTCATTAAGA
1 TCAATAAATACATCAAATCCATCTCAATAGGACCACCCAACCTCTGGGATACGAATCCATTAAGA
37379841 GTAATAAACTCAACCTCACATG
66 GTAA-AAACTCAACCTCACATG
* * *
37379863 TCAATAAATTCATCAAATCCATCTCAATAGGACCACCCAA-ATCCTGGGCTACGAATCCATTAAG
1 TCAATAAATACATCAAATCCATCTCAATAGGACCACCCAACCT-CTGGGATACGAATCCATTAAG
*
37379927 AGTAAGAACTCAACCT
65 AGTAAAAACTCAACCT
37379943 TATTCATGTA
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
86 11 0.16
87 58 0.84
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.24
Consensus pattern (86 bp):
TCAATAAATACATCAAATCCATCTCAATAGGACCACCCAACCTCTGGGATACGAATCCATTAAGA
GTAAAAACTCAACCTCACATG
Found at i:37401397 original size:14 final size:14
Alignment explanation
Indices: 37401378--37401405 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37401368 TAAAGTTATA
37401378 TTTAATAATTCATT
1 TTTAATAATTCATT
37401392 TTTAATAATTCATT
1 TTTAATAATTCATT
37401406 AATAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:37401436 original size:13 final size:13
Alignment explanation
Indices: 37401418--37401448 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
37401408 TAAATTGGGT
37401418 TTAAATTAATTAA
1 TTAAATTAATTAA
*
37401431 TTAAATTGATTAA
1 TTAAATTAATTAA
37401444 TTAAA
1 TTAAA
37401449 GTAGTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (13 bp):
TTAAATTAATTAA
Found at i:37407408 original size:29 final size:28
Alignment explanation
Indices: 37407360--37407417 Score: 64
Period size: 28 Copynumber: 2.0 Consensus size: 28
37407350 TGTGGAACAA
* * *
37407360 TGGCTTTTATTTTGACTAAAGTTTATTT
1 TGGCTTTTATTTTCACTAAACTGTATTT
37407388 TGGCTTTT-TTTCTCACTTAAACTGTATTT
1 TGGCTTTTATTT-TCAC-TAAACTGTATTT
37407417 T
1 T
37407418 TAGTTTCTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
27 3 0.12
28 11 0.44
29 11 0.44
ACGTcount: A:0.19, C:0.12, G:0.12, T:0.57
Consensus pattern (28 bp):
TGGCTTTTATTTTCACTAAACTGTATTT
Found at i:37408121 original size:12 final size:12
Alignment explanation
Indices: 37408104--37408128 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37408094 GGCCAATAGG
37408104 TTAGTATTAAAA
1 TTAGTATTAAAA
37408116 TTAGTATTAAAA
1 TTAGTATTAAAA
37408128 T
1 T
37408129 AGTGTCTCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (12 bp):
TTAGTATTAAAA
Found at i:37411883 original size:15 final size:15
Alignment explanation
Indices: 37411863--37411940 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
37411853 TTTATGGAAA
37411863 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
37411878 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
37411892 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
37411908 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
37411922 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
37411938 ATC
1 ATC
37411941 GAGATATTGG
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
14 9 0.19
15 29 0.62
16 9 0.19
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:37411892 original size:30 final size:30
Alignment explanation
Indices: 37411856--37411940 Score: 152
Period size: 30 Copynumber: 2.8 Consensus size: 30
37411846 ATCCATATTT
*
37411856 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
37411886 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
37411916 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
37411941 GAGATATTGG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.45, C:0.07, G:0.24, T:0.25
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:37414822 original size:52 final size:49
Alignment explanation
Indices: 37414724--37414857 Score: 173
Period size: 52 Copynumber: 2.7 Consensus size: 49
37414714 TTGAATTTTA
* *
37414724 AAAACTCTTTTAAATAATAATTTAAATTCTATTTAATCATCTTTTATTT
1 AAAACTCTTTTAAATAATAATTTAAATTATATTTAATCATCTTTTATCT
* *
37414773 AAAACTCTTTTAAATAATAATAATTAAATTATGTTTTAATTAT-TATTTATCT
1 AAAACTCTTTTAAATAATAAT--TTAAATTAT-ATTTAATCATCT-TTTATCT
*
37414825 AAAACTCTTTTAAATAATAA-CTAAATTATATTT
1 AAAACTCTTTTAAATAATAATTTAAATTATATTT
37414858 CCTTATCTGA
Statistics
Matches: 75, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
48 3 0.04
49 29 0.39
51 9 0.12
52 34 0.45
ACGTcount: A:0.43, C:0.08, G:0.01, T:0.49
Consensus pattern (49 bp):
AAAACTCTTTTAAATAATAATTTAAATTATATTTAATCATCTTTTATCT
Found at i:37414919 original size:94 final size:94
Alignment explanation
Indices: 37414806--37414979 Score: 303
Period size: 94 Copynumber: 1.9 Consensus size: 94
37414796 TTAAATTATG
*
37414806 TTTTAATTATTATTTATCTAAAACTCTTTTAAATAATAACTAAATTATATTTCCTTATCTGATAA
1 TTTTAATTATTATTTATCTAAAACTATTTTAAATAATAACTAAATTATATTTCCTTATCTGATAA
*
37414871 GGAATATATAAAATCATTTTGATTTTGAA
66 GAAATATATAAAATCATTTTGATTTTGAA
* * *
37414900 TTTTAATTATTATTTATCTAAAACTATTTTAAATAATAATTAAATTCTATTTCTTTATCTGATAA
1 TTTTAATTATTATTTATCTAAAACTATTTTAAATAATAACTAAATTATATTTCCTTATCTGATAA
37414965 GAAATATATAAAATC
66 GAAATATATAAAATC
37414980 CCATTTTTAT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 75 1.00
ACGTcount: A:0.41, C:0.08, G:0.04, T:0.47
Consensus pattern (94 bp):
TTTTAATTATTATTTATCTAAAACTATTTTAAATAATAACTAAATTATATTTCCTTATCTGATAA
GAAATATATAAAATCATTTTGATTTTGAA
Found at i:37418596 original size:50 final size:52
Alignment explanation
Indices: 37418486--37418602 Score: 141
Period size: 50 Copynumber: 2.3 Consensus size: 52
37418476 AACAAATAAG
* * * * * *
37418486 TTACTTAATGCATGAATTAATTTAATGATGTAACCTTTAACTAACATGGGAG
1 TTACATAATGCATGAATTAATTTAATGATGCAAACTTTAAATAACATGAGAA
*
37418538 TTACATAATGCATGTCA-TAATTT-ATGATGCAAAC-TTAAATAACATGAGAA
1 TTACATAATGCATG-AATTAATTTAATGATGCAAACTTTAAATAACATGAGAA
37418588 TTACATAATGCATGA
1 TTACATAATGCATGA
37418603 CTTTATTAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
50 27 0.48
51 9 0.16
52 19 0.34
53 1 0.02
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (52 bp):
TTACATAATGCATGAATTAATTTAATGATGCAAACTTTAAATAACATGAGAA
Found at i:37423031 original size:29 final size:28
Alignment explanation
Indices: 37422995--37423072 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
37422985 TCATGAGATT
37422995 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
37423025 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
37423052 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
37423073 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:37423290 original size:174 final size:174
Alignment explanation
Indices: 37423025--37423352 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
37423015 AAATTGTACA
37423025 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
37423090 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
37423155 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
37423199 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
37423264 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
37423329 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
37423353 ACCTTGAGTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:37429865 original size:26 final size:27
Alignment explanation
Indices: 37429814--37429866 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
37429804 AAAATTAATA
* *
37429814 CACAACTATTAATCTAATTATGCATAT
1 CACAAATATTAATCTAATTATCCATAT
37429841 CACAAATATTAAT-TAA-TATTCCATAT
1 CACAAATATTAATCTAATTA-TCCATAT
37429867 AAAACAACAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 2 0.09
26 9 0.39
27 12 0.52
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.38
Consensus pattern (27 bp):
CACAAATATTAATCTAATTATCCATAT
Found at i:37433767 original size:30 final size:30
Alignment explanation
Indices: 37433728--37433826 Score: 90
Period size: 30 Copynumber: 3.3 Consensus size: 30
37433718 ACGGCCTAAG
* *
37433728 ACACAGGCTGTTCGCACGACTGCGTGTCAC
1 ACACGGGCTGTTCGCACGACCGCGTGTCAC
* * * *
37433758 ACTCGGGCTGTTTGCACGGCCGTGTGTCAC
1 ACACGGGCTGTTCGCACGACCGCGTGTCAC
* * * * *
37433788 ACACGAGCTGTTCCCATGACCGTGTGTTAC
1 ACACGGGCTGTTCGCACGACCGCGTGTCAC
*
37433818 ACACAGGCT
1 ACACGGGCT
37433827 ATGTCAAATG
Statistics
Matches: 54, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.18, C:0.31, G:0.27, T:0.23
Consensus pattern (30 bp):
ACACGGGCTGTTCGCACGACCGCGTGTCAC
Found at i:37436341 original size:22 final size:22
Alignment explanation
Indices: 37436313--37436354 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
37436303 GCCAATATGG
*
37436313 GATTAAAATTAATTTTTTAAGA
1 GATTAAAATTAAGTTTTTAAGA
37436335 GATTAAAATTAAGTTTTTAA
1 GATTAAAATTAAGTTTTTAA
37436355 TAAAATAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (22 bp):
GATTAAAATTAAGTTTTTAAGA
Found at i:37436456 original size:69 final size:69
Alignment explanation
Indices: 37436335--37436579 Score: 282
Period size: 69 Copynumber: 3.5 Consensus size: 69
37436325 TTTTTTAAGA
* * *
37436335 GATTAAAATTAAGTTTTTAAT-AAAATAGTGAAGAAGTGAGTTATGAGAGTATTCTCTAGTTAAA
1 GATTAAAATTAATTTTTTAATAAAAATAGTGAAGAAGTGAGCTATAAGAGTATTCTCTAGTTAAA
37436399 GTGG
66 GTGG
* * *
37436403 GATTAAAATTTATTTTTTAATAAAAATAGTGAAGAAGTGAGCTATAAGTGTATTCTCTAGTTAAT
1 GATTAAAATTAATTTTTTAATAAAAATAGTGAAGAAGTGAGCTATAAGAGTATTCTCTAGTTAAA
*
37436468 GTGA
66 GTGG
* * *
37436472 GATTAAAATTAACTTTTTTATTGAAAA-AGTGAAGAAAATGCCA-CTTATTTATGAGAGTATTCT
1 GATTAAAATTAA-TTTTTTAATAAAAATAGTGAAG-AAGTG--AGC-TA--TA--AGAGTATTCT
37436535 CTAGTTAAAGTGG
57 CTAGTTAAAGTGG
*
37436548 GATTAAAATTAA-ATTTTAATAAAAATAGTGAA
1 GATTAAAATTAATTTTTTAATAAAAATAGTGAA
37436580 TAAATTGTCA
Statistics
Matches: 149, Mismatches: 17, Indels: 15
0.82 0.09 0.08
Matches are distributed among these distances:
68 19 0.13
69 60 0.40
70 16 0.11
71 1 0.01
72 3 0.02
74 12 0.08
75 6 0.04
76 32 0.21
ACGTcount: A:0.41, C:0.04, G:0.18, T:0.37
Consensus pattern (69 bp):
GATTAAAATTAATTTTTTAATAAAAATAGTGAAGAAGTGAGCTATAAGAGTATTCTCTAGTTAAA
GTGG
Found at i:37436537 original size:76 final size:75
Alignment explanation
Indices: 37436452--37436598 Score: 197
Period size: 76 Copynumber: 1.9 Consensus size: 75
37436442 AGCTATAAGT
* * * *
37436452 GTATTCTCTAGTTAATGTGAGATTAAAATTAACTTTTTTATTGAAAA-AGTGAAGAAAATGCCAC
1 GTATTCTCTAGTTAAAGTGAGATTAAAATTAA--ATTTTAATAAAAATAGTGAAGAAAATGCCAC
37436516 TTATTTATGAGA
64 TTATTTATGAGA
* * * *
37436528 GTATTCTCTAGTTAAAGTGGGATTAAAATTAAATTTTAATAAAAATAGTGAATAAATTGTCACTT
1 GTATTCTCTAGTTAAAGTGAGATTAAAATTAAATTTTAATAAAAATAGTGAAGAAAATGCCACTT
37436593 ATTTAT
66 ATTTAT
37436599 AAGGTAAATG
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
74 10 0.16
75 22 0.35
76 30 0.48
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.39
Consensus pattern (75 bp):
GTATTCTCTAGTTAAAGTGAGATTAAAATTAAATTTTAATAAAAATAGTGAAGAAAATGCCACTT
ATTTATGAGA
Found at i:37436785 original size:29 final size:29
Alignment explanation
Indices: 37436753--37436809 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
37436743 ACATTTCAAG
*
37436753 GGATTAAAATTAAGTTTTAATGAAAATAA
1 GGATTAAAATTAACTTTTAATGAAAATAA
* *
37436782 GGATTAAAATTAACTTTTCATTAAAATA
1 GGATTAAAATTAACTTTTAATGAAAATA
37436810 GTGAAGAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.49, C:0.04, G:0.11, T:0.37
Consensus pattern (29 bp):
GGATTAAAATTAACTTTTAATGAAAATAA
Found at i:37439034 original size:61 final size:59
Alignment explanation
Indices: 37438906--37439038 Score: 171
Period size: 61 Copynumber: 2.2 Consensus size: 59
37438896 TTCCATCCTT
*
37438906 AACTCAAGGGGTCGGCTATGCATGAGAGAAAAAAGGGGGATTGACATTCTAGTTTTAATA
1 AACTCAAGGGG-CGGCTATGCATGAGAGAAAAAAGGAGGATTGACATTCTAGTTTTAATA
* * *
37438966 AAATCAAGGGGCAGAGC-ATGCATGAGAGAAAAAAAGGAGGATTGACATGTC-ATTTTTAGTA
1 AACTCAAGGGGC-G-GCTATGCATGAGAG-AAAAAAGGAGGATTGACAT-TCTAGTTTTAATA
37439027 AACTCAAGGGGC
1 AACTCAAGGGGC
37439039 TTCTCACAAG
Statistics
Matches: 64, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
59 1 0.02
60 22 0.34
61 39 0.61
62 2 0.03
ACGTcount: A:0.38, C:0.12, G:0.29, T:0.22
Consensus pattern (59 bp):
AACTCAAGGGGCGGCTATGCATGAGAGAAAAAAGGAGGATTGACATTCTAGTTTTAATA
Found at i:37449291 original size:125 final size:122
Alignment explanation
Indices: 37449122--37449371 Score: 419
Period size: 125 Copynumber: 2.0 Consensus size: 122
37449112 TTTATTTATG
** *
37449122 TTAGTTATTTATTATTTGTTTTTTTATTTGACTTGGATTTGATTGTGTTTCAGGTTATGTCAGAA
1 TTAGTTATTTATTATTTGTTTTTTTATTTGACTTAAATTTGATTGTGTTTCAGGTTATGTCAAAA
* * *
37449187 TTCGAGTTTCTTTTTCGAACGTCTAAAGCCCTAAGTCAAATCTGTGACTTGAACAAATT
66 TCCGAGTTTC--TTTCGAACATCTAAAGCCCTAAGTCAAATCCGTGACTTGAACAAATT
37449246 TTAGTTATTTATTATTTGTTTGTTTTATTTGACTTAAATTTGATTGTGTTTCAGGTTATGTCAAA
1 TTAGTTATTTATTATTTGTTT-TTTTATTTGACTTAAATTTGATTGTGTTTCAGGTTATGTCAAA
37449311 ATCCGAGTTTCTTTCGAACATCTAAAGCCCTAAGTCAAATCCGTGACTTGAACAAATT
65 ATCCGAGTTTCTTTCGAACATCTAAAGCCCTAAGTCAAATCCGTGACTTGAACAAATT
37449369 TTA
1 TTA
37449372 TGACTTGCTC
Statistics
Matches: 119, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
123 48 0.40
124 21 0.18
125 50 0.42
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.46
Consensus pattern (122 bp):
TTAGTTATTTATTATTTGTTTTTTTATTTGACTTAAATTTGATTGTGTTTCAGGTTATGTCAAAA
TCCGAGTTTCTTTCGAACATCTAAAGCCCTAAGTCAAATCCGTGACTTGAACAAATT
Found at i:37455218 original size:101 final size:102
Alignment explanation
Indices: 37455099--37455283 Score: 266
Period size: 101 Copynumber: 1.8 Consensus size: 102
37455089 AAAGTGATGG
* * *
37455099 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAAAA--TGATAGGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAAATGTGAT-GGTCACATGTGTAGC
37455162 ACTATATGCAGGCTACTATGCGTACCGAATAGCTTCGA
65 ACTATATGCAGGCTACTATGCGTACCGAATAGCTTCGA
* * ** *
37455200 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTATCGGATTGTGATGGTCACATGTGTAGCA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAAATGTGATGGTCACATGTGTAGCA
*
37455265 CTATGTGCAGGCTACTATG
66 CTATATGCAGGCTACTATG
37455284 TGAACCAGTA
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
101 37 0.51
102 32 0.44
103 4 0.05
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAAATGTGATGGTCACATGTGTAGCA
CTATATGCAGGCTACTATGCGTACCGAATAGCTTCGA
Found at i:37455223 original size:51 final size:49
Alignment explanation
Indices: 37455096--37455285 Score: 193
Period size: 51 Copynumber: 3.8 Consensus size: 49
37455086 GTGAAAGTGA
* * * *
37455096 TGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACC-AAAATGAT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATA-G-T
* * * *
37455146 AGGTCGCATGTGTAGTACTATATGCAGGCTACTATGCGTACCGAATAGCT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATAG-T
* * * * *
37455196 TCGATCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTATCGGATTGT
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATAGT
*
37455246 GATGGTCACATGTGTAGCACTATGTGCAGGCTACTATGTG
1 --TGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
37455286 AACCAGTATC
Statistics
Matches: 115, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
50 38 0.33
51 76 0.66
52 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (49 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATAGT
Found at i:37455234 original size:26 final size:26
Alignment explanation
Indices: 37455205--37455285 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
37455195 TTCGATCACG
37455205 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
*
37455231 TGTGTA-T-CGGATTGTG-ATGG-TCAC-A
1 TGTGTAGTAC-TA-TGTGCA-GGCT-ACTA
*
37455256 TGTGTAGCACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
37455282 TGTG
1 TGTG
37455286 AACCAGTATC
Statistics
Matches: 43, Mismatches: 3, Indels: 18
0.67 0.05 0.28
Matches are distributed among these distances:
24 1 0.02
25 19 0.44
26 22 0.51
27 1 0.02
ACGTcount: A:0.21, C:0.15, G:0.30, T:0.35
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:37455380 original size:107 final size:107
Alignment explanation
Indices: 37455254--37455467 Score: 419
Period size: 107 Copynumber: 2.0 Consensus size: 107
37455244 GTGATGGTCA
37455254 CATGTGTAGCACTATGTGCAGGCTACTATGTGAACCAGTATCATTAATTATAAGGTGGTTGCTAT
1 CATGTGTAGCACTATGTGCAGGCTACTATGTGAACCAGTATCATTAATTATAAGGTGGTTGCTAT
*
37455319 GTGCTGATCCCACCGGATATCATTGATTACAAAGGGTGGTTG
66 GTGCTGATCCCACCGGATATCAATGATTACAAAGGGTGGTTG
37455361 CATGTGTAGCACTATGTGCAGGCTACTATGTGAACCAGTATCATTAATTATAAGGTGGTTGCTAT
1 CATGTGTAGCACTATGTGCAGGCTACTATGTGAACCAGTATCATTAATTATAAGGTGGTTGCTAT
37455426 GTGCTGATCCCACCGGATATCAATGATTACAAAGGGTGGTTG
66 GTGCTGATCCCACCGGATATCAATGATTACAAAGGGTGGTTG
37455468 TTGTGTGCTG
Statistics
Matches: 106, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
107 106 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (107 bp):
CATGTGTAGCACTATGTGCAGGCTACTATGTGAACCAGTATCATTAATTATAAGGTGGTTGCTAT
GTGCTGATCCCACCGGATATCAATGATTACAAAGGGTGGTTG
Found at i:37455637 original size:16 final size:16
Alignment explanation
Indices: 37455616--37455647 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37455606 CGATTGAAAG
*
37455616 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
37455632 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
37455648 GCAACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:37458450 original size:48 final size:48
Alignment explanation
Indices: 37458377--37458470 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 48
37458367 CATGGCAACA
*
37458377 TGTGATATGTGATTTCTGTATAAGACCATATCTAGGATATGGCATCGG
1 TGTGATATGTGATTTCTGTATAAGACCATAGCTAGGATATGGCATCGG
* * * *
37458425 TGTGATATGTGCTATTGTGTA-AAGACCATAGCTGGGCTATGGCATC
1 TGTGATATGTGAT-TTCTGTATAAGACCATAGCTAGGATATGGCATC
37458471 AATATGTAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
48 34 0.85
49 6 0.15
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.34
Consensus pattern (48 bp):
TGTGATATGTGATTTCTGTATAAGACCATAGCTAGGATATGGCATCGG
Found at i:37461183 original size:10 final size:10
Alignment explanation
Indices: 37461159--37461190 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
37461149 TTTGATTAGT
37461159 GAAAAAG-GA
1 GAAAAAGTGA
37461168 -AAAAAGTGA
1 GAAAAAGTGA
37461177 GAAAAAGTGA
1 GAAAAAGTGA
37461187 GAAA
1 GAAA
37461191 TTTCTCGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 6 0.29
9 2 0.10
10 13 0.62
ACGTcount: A:0.66, C:0.00, G:0.28, T:0.06
Consensus pattern (10 bp):
GAAAAAGTGA
Found at i:37461462 original size:51 final size:52
Alignment explanation
Indices: 37461299--37461493 Score: 200
Period size: 51 Copynumber: 3.8 Consensus size: 52
37461289 TGAAAGTGAT
* * * *
37461299 GGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGA-A-TGATA
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGCGATA
* * * * *
37461349 GGTCACATGTGTAGTACTATATGCAGGCTACTATGCGTACCGGATAGC-TTC
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGCGATA
* ** *
37461400 GATCATGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGCGAT-
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGCGATA
* * * * *
37461451 GGTCACATGTGTAGCACTATTTGCAAGCTACTATGTGAACCGG
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
37461494 TATCATTAAT
Statistics
Matches: 116, Mismatches: 26, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
50 38 0.33
51 77 0.66
52 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (52 bp):
GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGCGATA
Found at i:37461493 original size:102 final size:101
Alignment explanation
Indices: 37461305--37461493 Score: 272
Period size: 102 Copynumber: 1.9 Consensus size: 101
37461295 TGATGGTCAC
* * *
37461305 GTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCACATGTGTAGTACTATA
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAACGATAGGTCACATGTGTAGCACTATA
* *
37461370 TGCAGGCTACTATGCGTACCGGATAGCTTCGATCAT
66 TGCAAGCTACTATGCGAACCGGATAGCTTCGATCAT
* *
37461406 GTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGCGAT-GGTCACATGTGTAGCACTA
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-A-CGATAGGTCACATGTGTAGCACTA
* *
37461470 TTTGCAAGCTACTATGTGAACCGG
64 TATGCAAGCTACTATGCGAACCGG
37461494 TATCATTAAT
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
101 35 0.45
102 39 0.51
103 3 0.04
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (101 bp):
GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAACGATAGGTCACATGTGTAGCACTATA
TGCAAGCTACTATGCGAACCGGATAGCTTCGATCAT
Found at i:37465046 original size:20 final size:19
Alignment explanation
Indices: 37465021--37465060 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
37465011 TTAGTTTTTG
37465021 TTTATTTATTTATTTATATT
1 TTTATTTATTTATTTA-ATT
*
37465041 TTTATTTATTTGTTTAATT
1 TTTATTTATTTATTTAATT
37465060 T
1 T
37465061 CTTTTCAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.75
Consensus pattern (19 bp):
TTTATTTATTTATTTAATT
Found at i:37466070 original size:48 final size:48
Alignment explanation
Indices: 37465999--37466095 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
37465989 TGGAAAGATC
37465999 ATCCAAATCTATTCTAACTTGTAGAGGTCTATTCTAACTTGGATTGGA
1 ATCCAAATCTATTCTAACTTGTAGAGGTCTATTCTAACTTGGATTGGA
37466047 ATCCAAATCTATTCTAACTTGTAGAGGTCTATTCTAACTTGGATTGGA
1 ATCCAAATCTATTCTAACTTGTAGAGGTCTATTCTAACTTGGATTGGA
37466095 A
1 A
37466096 AGATCATCCA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.37
Consensus pattern (48 bp):
ATCCAAATCTATTCTAACTTGTAGAGGTCTATTCTAACTTGGATTGGA
Found at i:37473003 original size:62 final size:61
Alignment explanation
Indices: 37472883--37473006 Score: 185
Period size: 62 Copynumber: 2.0 Consensus size: 61
37472873 GTGACACCTC
*
37472883 AATAGAGGTCTAACATGGAAGGCCATATTTAGCTATACCAACCAATATAGTCCACCAGGAT
1 AATAGAGGTCTAACATGGAAGACCATATTTAGCTATACCAACCAATATAGTCCACCAGGAT
* * * **
37472944 AATAGAGGTCTAACATGTAAGACCATATCTTAGCTATGCCAACCAGTATAGTCTGCCAGGAT
1 AATAGAGGTCTAACATGGAAGACCATAT-TTAGCTATACCAACCAATATAGTCCACCAGGAT
37473006 A
1 A
37473007 GTAAACACAG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
61 26 0.46
62 30 0.54
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (61 bp):
AATAGAGGTCTAACATGGAAGACCATATTTAGCTATACCAACCAATATAGTCCACCAGGAT
Found at i:37479890 original size:32 final size:32
Alignment explanation
Indices: 37479848--37479957 Score: 139
Period size: 32 Copynumber: 3.4 Consensus size: 32
37479838 TAGAAATTTT
* **
37479848 TGGCCCACACGGCCTAAATTGCCATGCTTGTG
1 TGGCCCACACGGCCCAAATTGCCATGCCCGTG
* *
37479880 TGGCCTACACGGCCCAAATTGCCATGCCCATG
1 TGGCCCACACGGCCCAAATTGCCATGCCCGTG
* * *
37479912 TCGCCCACACCGCCCAAATTGCCTTGCCCGTG
1 TGGCCCACACGGCCCAAATTGCCATGCCCGTG
*
37479944 TGGCCTACACGGCC
1 TGGCCCACACGGCC
37479958 TCGCACATTG
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 65 1.00
ACGTcount: A:0.18, C:0.39, G:0.23, T:0.20
Consensus pattern (32 bp):
TGGCCCACACGGCCCAAATTGCCATGCCCGTG
Found at i:37480854 original size:52 final size:52
Alignment explanation
Indices: 37480776--37480880 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
37480766 CAAACAATCC
37480776 TTAACAAAAATATAATACCCTTTTGTACACACAAAGTCTAGAACCCAAGACT
1 TTAACAAAAATATAATACCCTTTTGTACACACAAAGTCTAGAACCCAAGACT
37480828 TTAACAAAAATATAATACCCTTTTGTACACACAAAGTCTAGAACCCAAGACT
1 TTAACAAAAATATAATACCCTTTTGTACACACAAAGTCTAGAACCCAAGACT
37480880 T
1 T
37480881 CAAACGCACT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.44, C:0.23, G:0.08, T:0.26
Consensus pattern (52 bp):
TTAACAAAAATATAATACCCTTTTGTACACACAAAGTCTAGAACCCAAGACT
Found at i:37481772 original size:25 final size:24
Alignment explanation
Indices: 37481744--37481790 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
37481734 TCACTTGCAT
37481744 TTATACA-TTATATATTTAATGTTAA
1 TTATACACTT-TAT-TTTAATGTTAA
*
37481769 TTATGCACTTTATTTTAATGTT
1 TTATACACTTTATTTTAATGTT
37481791 TTATATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 9 0.45
26 2 0.10
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (24 bp):
TTATACACTTTATTTTAATGTTAA
Found at i:37493217 original size:42 final size:42
Alignment explanation
Indices: 37493149--37493345 Score: 215
Period size: 42 Copynumber: 4.7 Consensus size: 42
37493139 AAGGAAAACA
* *
37493149 TTCATTGT-ATTTAGAGGTCCAGGTGTGGAGGTCTATTTACTT
1 TTCATT-TCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * *
37493191 TTCATTTCATTTAAAGGCCCATGTGTGGAGGTCCATTTGCTT
1 TTCATTTCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
37493233 TTCATTTCATTTAGAGGCTCCCAGGTTTGGAGGTCCATTCACTT
1 TTCATTTCATTTAGAGG--CCCAGGTGTGGAGGTCCATTTACTT
* * * *
37493277 TTCATTGCATTTGGAGACCCAGGTGTGGAGGTCCGTTTACTT
1 TTCATTTCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
*
37493319 TTC---T-AGGTTAGAGGCCCAGGTGTGGAG
1 TTCATTTCA-TTTAGAGGCCCAGGTGTGGAG
37493346 ATTATTGCAG
Statistics
Matches: 131, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
38 1 0.01
39 18 0.14
41 1 0.01
42 76 0.58
44 35 0.27
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.38
Consensus pattern (42 bp):
TTCATTTCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
Found at i:37493303 original size:86 final size:84
Alignment explanation
Indices: 37493149--37493345 Score: 222
Period size: 86 Copynumber: 2.4 Consensus size: 84
37493139 AAGGAAAACA
* * * * *
37493149 TTCATTGTATTTAGAGGTCCAGGTGTGGAGGTCTATTTACTTTTCATTTCATTTAAAGGCCCATG
1 TTCATTGTATTTAGAGGTCCAGGTGTGGAGGTCCATTCACTTTTCATTGCATTTAAAGACCCAGG
*
37493214 TGTGGAGGTCCATTTGCTT
66 TGTGGAGGTCCATTTACTT
* **
37493233 TTCATT-TCATTTAGAGGCTCCCAGGTTTGGAGGTCCATTCACTTTTCATTGCATTTGGAGACCC
1 TTCATTGT-ATTTAGAGG-T-CCAGGTGTGGAGGTCCATTCACTTTTCATTGCATTTAAAGACCC
*
37493297 AGGTGTGGAGGTCCGTTTACTT
63 AGGTGTGGAGGTCCATTTACTT
* * *
37493319 TTC-TAG--GTTAGAGGCCCAGGTGTGGAG
1 TTCATTGTATTTAGAGGTCCAGGTGTGGAG
37493346 ATTATTGCAG
Statistics
Matches: 95, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
81 11 0.12
83 8 0.08
84 15 0.16
85 2 0.02
86 59 0.62
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.38
Consensus pattern (84 bp):
TTCATTGTATTTAGAGGTCCAGGTGTGGAGGTCCATTCACTTTTCATTGCATTTAAAGACCCAGG
TGTGGAGGTCCATTTACTT
Found at i:37493926 original size:18 final size:18
Alignment explanation
Indices: 37493903--37493937 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37493893 ACTACAGGCA
*
37493903 TTCTATTTCTTTTTTTTC
1 TTCTATCTCTTTTTTTTC
*
37493921 TTCTATCTGTTTTTTTT
1 TTCTATCTCTTTTTTTT
37493938 TGCCATAGGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.14, G:0.03, T:0.77
Consensus pattern (18 bp):
TTCTATCTCTTTTTTTTC
Found at i:37494171 original size:45 final size:46
Alignment explanation
Indices: 37494107--37494203 Score: 144
Period size: 45 Copynumber: 2.1 Consensus size: 46
37494097 AAGTTTTAAA
* *
37494107 TTTTTTTTAAAAAAGAGAAAATTTAGATATTAA-TAA-AAAAATAT
1 TTTTTTTTAAAAAAGAGAAAATTTAGATATTAACAAATAAAAATAG
*
37494151 TTTTTTTTAAAAAAATAGAAAATTTAGATATTAACAAATAAAAATAG
1 TTTTTTTT-AAAAAAGAGAAAATTTAGATATTAACAAATAAAAATAG
37494198 TTTTTT
1 TTTTTT
37494204 AGTTATTTTA
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
44 8 0.17
45 24 0.51
46 2 0.04
47 13 0.28
ACGTcount: A:0.52, C:0.01, G:0.06, T:0.41
Consensus pattern (46 bp):
TTTTTTTTAAAAAAGAGAAAATTTAGATATTAACAAATAAAAATAG
Found at i:37494459 original size:150 final size:152
Alignment explanation
Indices: 37494248--37494528 Score: 469
Period size: 150 Copynumber: 1.8 Consensus size: 152
37494238 AGTAAAAGTT
*
37494248 TTAATCTTTAAGAAAAATAGTATTTTTTTTTAAAAAAAAGGAGAAAGTTTAGATTTTGAAAAATA
1 TTAATCTTTAAGAAAAATAGTA-TTTCTTTT-AAAAAAAGGAGAAAGTTTAGATTTTGAAAAATA
* *
37494313 AAAATCTATTGTTTTT-AGTCATTTTAAAGGAAAGTTTAAAATTTTAAAACAATGTTTTGATTTT
64 AAAATCTATT-TTTTTGAGTCATTTTAAAAGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTT
37494377 TTTTAAACTACTTCAAAATAAAAAC
128 TTTTAAACTACTTCAAAATAAAAAC
37494402 TTAATCTTTAAGAAAAATAGTA-TTCTTTT-AAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAA
1 TTAATCTTTAAGAAAAATAGTATTTCTTTTAAAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAA
* *
37494465 AATCTGTTTTTTTGAGTCATTTTAAAAGAAAGTTTAAATTTTTAAAACAAAGTTTTGATTTTTT
66 AATCTATTTTTTTGAGTCATTTTAAAAGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTT
37494529 ATAACTATTT
Statistics
Matches: 121, Mismatches: 5, Indels: 6
0.92 0.04 0.05
Matches are distributed among these distances:
149 5 0.04
150 88 0.73
152 6 0.05
154 22 0.18
ACGTcount: A:0.43, C:0.05, G:0.11, T:0.42
Consensus pattern (152 bp):
TTAATCTTTAAGAAAAATAGTATTTCTTTTAAAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAA
AATCTATTTTTTTGAGTCATTTTAAAAGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTT
TAAACTACTTCAAAATAAAAAC
Found at i:37495190 original size:20 final size:20
Alignment explanation
Indices: 37495147--37495191 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
37495137 TTGTATAATT
* *
37495147 TTTATTTATTTTATTTCGTT
1 TTTATTTATTTTATGTCGTA
37495167 TTTATTTATTTTCATGTC-TA
1 TTTATTTATTTT-ATGTCGTA
37495187 TTTAT
1 TTTAT
37495192 ATTTTTTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.18, C:0.07, G:0.04, T:0.71
Consensus pattern (20 bp):
TTTATTTATTTTATGTCGTA
Found at i:37502723 original size:19 final size:21
Alignment explanation
Indices: 37502699--37502739 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
37502689 TGAATTTAGT
37502699 AAAATAAA-AAT-AGTAAGTG
1 AAAATAAAGAATGAGTAAGTG
*
37502718 AAAATAAAGTATGAGTAAGTG
1 AAAATAAAGAATGAGTAAGTG
37502739 A
1 A
37502740 TGATATAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 2 0.11
21 9 0.47
ACGTcount: A:0.59, C:0.00, G:0.20, T:0.22
Consensus pattern (21 bp):
AAAATAAAGAATGAGTAAGTG
Done.