Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 132 of 205
Found at i:39981374 original size:27 final size:27
Alignment explanation
Indices: 39981344--39981521 Score: 173
Period size: 27 Copynumber: 6.6 Consensus size: 27
39981334 ATATTGAGTC
* *
39981344 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
39981371 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
39981398 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
39981426 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
**
39981453 CGCACACTTAGTGC-ATCAT-ATCCATTT
1 CGCACACTTAGTGCTA-CATAAT-CAACT
* *
39981480 CGCACACTTAGTG-TAACATAGTCAAAT
1 CGCACACTTAGTGCT-ACATAATCAACT
39981507 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
39981522 GTACAATTTA
Statistics
Matches: 127, Mismatches: 17, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 26 0.20
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:39982921 original size:59 final size:59
Alignment explanation
Indices: 39982854--39982977 Score: 230
Period size: 59 Copynumber: 2.1 Consensus size: 59
39982844 CTTTTTTTTT
*
39982854 CATCACCCTTCCTTTCATTATTTAATTATCATGCTTATTATTTTATTTTCCTTTCCATA
1 CATCACCCTTCCTTTCATTATTTAATTATCATGCTTATTATTTTATTTTCCTTACCATA
*
39982913 CGTCACCCTTCCTTTCATTATTTAATTATCATGCTTATTATTTTATTTTCCTTACCATA
1 CATCACCCTTCCTTTCATTATTTAATTATCATGCTTATTATTTTATTTTCCTTACCATA
39982972 CATCAC
1 CATCAC
39982978 TAACACAACA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 62 1.00
ACGTcount: A:0.23, C:0.25, G:0.02, T:0.50
Consensus pattern (59 bp):
CATCACCCTTCCTTTCATTATTTAATTATCATGCTTATTATTTTATTTTCCTTACCATA
Found at i:39986871 original size:40 final size:40
Alignment explanation
Indices: 39986797--39987021 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
39986787 GGATATAACC
* * * * * *
39986797 ACTCGCAC-AAGGCCGTCGGGTCTTACCCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
39986836 ACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
39986876 ACTCGCACAAATGCCTTCGAGACTTAGCCTGGA-ATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
* * *
39986916 ACTCGCACAAATGCCTTCAGGACGTAGCCCGGA-ATTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
* *
39986956 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAATC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
* *
39986996 ACTAGCACAAATGTCTTCGGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTA
39987022 ACCCCGTTAG
Statistics
Matches: 161, Mismatches: 23, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 8 0.05
40 153 0.95
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:39991291 original size:28 final size:30
Alignment explanation
Indices: 39991260--39991316 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
39991250 TTTTATCATT
39991260 TATCAT-CTTTT-ATTATTTTACTTTCCAA
1 TATCATCCTTTTCATTATTTTACTTTCCAA
* *
39991288 TATCATCCTTTTCTTTATTTTATTTTCCA
1 TATCATCCTTTTCATTATTTTACTTTCCA
39991317 TAGATGAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 6 0.24
29 5 0.20
30 14 0.56
ACGTcount: A:0.21, C:0.19, G:0.00, T:0.60
Consensus pattern (30 bp):
TATCATCCTTTTCATTATTTTACTTTCCAA
Found at i:39993277 original size:34 final size:34
Alignment explanation
Indices: 39993226--39993350 Score: 128
Period size: 34 Copynumber: 3.7 Consensus size: 34
39993216 TAAGCCATTT
* *
39993226 TAGTAACAG-CTAGGGCCTTAGCCCATTTCAGTAA
1 TAGTAGCAGTCTA-GGCCTGAGCCCATTTCAGTAA
* *
39993260 TAGTAGCAATCTAGGCCTGAGCCCGA-GTCAGTAA
1 TAGTAGCAGTCTAGGCCTGAGCCC-ATTTCAGTAA
* * * *
39993294 CACTAGCAGTTTAGGCCTGAGCCCGTTTCAGTAA
1 TAGTAGCAGTCTAGGCCTGAGCCCATTTCAGTAA
* *
39993328 TAGTAGCAGTCTGGGCCTAAGCC
1 TAGTAGCAGTCTAGGCCTGAGCC
39993351 TATTAACATA
Statistics
Matches: 73, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
34 69 0.95
35 4 0.05
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (34 bp):
TAGTAGCAGTCTAGGCCTGAGCCCATTTCAGTAA
Found at i:40000084 original size:34 final size:34
Alignment explanation
Indices: 40000046--40000161 Score: 137
Period size: 34 Copynumber: 3.4 Consensus size: 34
40000036 GTAATAGCTA
* *
40000046 GGGCCTTAGCCCATTTCAGTAACAGTAGCAATTT
1 GGGCCTGAGCCCATTTCAGTAACAGTAGCAATCT
* *
40000080 GGGCC-GAGCCCGTCTT-AGTAACAGTAGCAGTCT
1 GGGCCTGAGCCCAT-TTCAGTAACAGTAGCAATCT
* *
40000113 GGGCCTGAGCTCGTTTCAGTAACAGTAGCAATCT
1 GGGCCTGAGCCCATTTCAGTAACAGTAGCAATCT
* *
40000147 GGGCATAAGCCCATT
1 GGGCCTGAGCCCATT
40000162 AACATATCAA
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
33 28 0.41
34 41 0.59
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (34 bp):
GGGCCTGAGCCCATTTCAGTAACAGTAGCAATCT
Found at i:40001522 original size:50 final size:50
Alignment explanation
Indices: 40001461--40001560 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
40001451 ATGCGAGTGG
40001461 ACAGATTCAAAGCAACATGTTGACAATCATGCAAACAAATTAATTTACTC
1 ACAGATTCAAAGCAACATGTTGACAATCATGCAAACAAATTAATTTACTC
40001511 ACAGATTCAAAGCAACATGTTGACAATCATGCAAACAAATTAATTTACTC
1 ACAGATTCAAAGCAACATGTTGACAATCATGCAAACAAATTAATTTACTC
40001561 GCTAATGCCT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.44, C:0.20, G:0.10, T:0.26
Consensus pattern (50 bp):
ACAGATTCAAAGCAACATGTTGACAATCATGCAAACAAATTAATTTACTC
Found at i:40003930 original size:69 final size:69
Alignment explanation
Indices: 40003819--40004022 Score: 408
Period size: 69 Copynumber: 3.0 Consensus size: 69
40003809 CCAGACTCTT
40003819 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCGCCTAGACCGTAGGCAAAATTTTTTTTTT
1 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCGCCTAGACCGTAGGCAAAATTTTTTTTTT
40003884 TTGA
66 TTGA
40003888 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCGCCTAGACCGTAGGCAAAATTTTTTTTTT
1 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCGCCTAGACCGTAGGCAAAATTTTTTTTTT
40003953 TTGA
66 TTGA
40003957 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCGCCTAGACCGTAGGCAAAATTTTTTTTTT
1 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCGCCTAGACCGTAGGCAAAATTTTTTTTTT
40004022 T
66 T
40004023 ACAAAACCAT
Statistics
Matches: 135, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 135 1.00
ACGTcount: A:0.16, C:0.21, G:0.16, T:0.48
Consensus pattern (69 bp):
TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCGCCTAGACCGTAGGCAAAATTTTTTTTTT
TTGA
Found at i:40005766 original size:103 final size:104
Alignment explanation
Indices: 40005587--40005851 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
40005577 AACCGTTATT
* * * *
40005587 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
40005652 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
40005690 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
40005754 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
40005794 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
40005852 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:40006220 original size:30 final size:30
Alignment explanation
Indices: 40006186--40006243 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
40006176 CCACCCAACT
*
40006186 TTTTGAAAAATTATAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
40006216 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
40006244 GCTCGGAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:40010237 original size:40 final size:40
Alignment explanation
Indices: 40010207--40010418 Score: 298
Period size: 40 Copynumber: 5.3 Consensus size: 40
40010197 GGACTAAGAT
* * * *
40010207 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
40010247 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
40010287 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
40010327 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * * *
40010367 CCGAAGGCATTGTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATT-CGTGCGAGTTATTAAATCCGGGTTAAGTC
40010408 CCGAAGGCATT
1 CCGAAGGCATT
40010419 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 14, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 123 0.78
41 34 0.22
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:40010291 original size:80 final size:80
Alignment explanation
Indices: 40010207--40010418 Score: 334
Period size: 80 Copynumber: 2.6 Consensus size: 80
40010197 GGACTAAGAT
* *
40010207 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
40010272 AATCCGGGTTAAGTC
66 AATCCGGGTTAAGTC
* *
40010287 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
*
40010352 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * * *
40010367 CCGAAGGCATTGTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 CCGAAGGCATT-TGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
40010419 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 86 0.72
81 34 0.28
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
AATCCGGGTTAAGTC
Found at i:40010368 original size:120 final size:122
Alignment explanation
Indices: 40010154--40010418 Score: 313
Period size: 120 Copynumber: 2.2 Consensus size: 122
40010144 TTGAATGCTG
* * *
40010154 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* **
40010218 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-CGTGCGAGTTGTTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGCGTGCGAGTTACTAAA
* * * * **
40010274 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * *
40010337 TCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGTGAGTTACTAAA
65 TCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGCGTGCGAGTTACTAAA
* *
40010395 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
40010419 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
119 1 0.01
120 81 0.67
121 39 0.32
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (122 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGCGTGCGAGTTACTAAA
Found at i:40010442 original size:120 final size:119
Alignment explanation
Indices: 40010155--40010453 Score: 289
Period size: 120 Copynumber: 2.5 Consensus size: 119
40010145 TGAATGCTGT
* ** * * * *
40010155 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTATATCCGG-TTAAG-TCCCGAAGGCATT
* ** *
40010218 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAAT
63 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
* ** * * *
40010275 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTATATCC-GGTTAAGTCCCGAAGGCATTCG
* ** * * *
40010340 TGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGTGAGTTACTAAAA
65 TGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-CGTGCGAGTTACTAAAA
* * *
40010396 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTATATCCGGTTAAGTCCCGAAGG
40010454 TACGTGATTT
Statistics
Matches: 147, Mismatches: 27, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
119 1 0.01
120 94 0.64
121 52 0.35
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTATATCCGGTTAAGTCCCGAAGGCATTCGT
GCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
Found at i:40010581 original size:61 final size:61
Alignment explanation
Indices: 40010506--40010630 Score: 250
Period size: 61 Copynumber: 2.0 Consensus size: 61
40010496 GAATACTCGA
40010506 AAAACATCCCAATATGGGGATATGTTACGTATGTGTTGAATTTAATCGAGCCCTTACAAAT
1 AAAACATCCCAATATGGGGATATGTTACGTATGTGTTGAATTTAATCGAGCCCTTACAAAT
40010567 AAAACATCCCAATATGGGGATATGTTACGTATGTGTTGAATTTAATCGAGCCCTTACAAAT
1 AAAACATCCCAATATGGGGATATGTTACGTATGTGTTGAATTTAATCGAGCCCTTACAAAT
40010628 AAA
1 AAA
40010631 TGTTCGCTCA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 64 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (61 bp):
AAAACATCCCAATATGGGGATATGTTACGTATGTGTTGAATTTAATCGAGCCCTTACAAAT
Found at i:40014283 original size:263 final size:263
Alignment explanation
Indices: 40013816--40014345 Score: 1060
Period size: 263 Copynumber: 2.0 Consensus size: 263
40013806 GCTAGAAGCA
40013816 CAAAATCGAGAAGCACTTTCAAGTATCGAGGCGAACTAAATTTTAGCCTAAGAAGGTCCAAAATT
1 CAAAATCGAGAAGCACTTTCAAGTATCGAGGCGAACTAAATTTTAGCCTAAGAAGGTCCAAAATT
40013881 ATATGTATTAATTCATAATATAATTAATTTTAGTTTATATCCAATTTAATTTTGGTTAATAACTT
66 ATATGTATTAATTCATAATATAATTAATTTTAGTTTATATCCAATTTAATTTTGGTTAATAACTT
40013946 ATTATTAATTAATTATGAAAAAGTGGTCCAGTTGAACATAACTCAGTGAACTTAACTGACCAAGA
131 ATTATTAATTAATTATGAAAAAGTGGTCCAGTTGAACATAACTCAGTGAACTTAACTGACCAAGA
40014011 AATGGACAGCCCAAACACCATCCCAAGAGCTAACCCAAATCAGCTTATTAGCTGATTATTTAAGC
196 AATGGACAGCCCAAACACCATCCCAAGAGCTAACCCAAATCAGCTTATTAGCTGATTATTTAAGC
40014076 TTG
261 TTG
40014079 CAAAATCGAGAAGCACTTTCAAGTATCGAGGCGAACTAAATTTTAGCCTAAGAAGGTCCAAAATT
1 CAAAATCGAGAAGCACTTTCAAGTATCGAGGCGAACTAAATTTTAGCCTAAGAAGGTCCAAAATT
40014144 ATATGTATTAATTCATAATATAATTAATTTTAGTTTATATCCAATTTAATTTTGGTTAATAACTT
66 ATATGTATTAATTCATAATATAATTAATTTTAGTTTATATCCAATTTAATTTTGGTTAATAACTT
40014209 ATTATTAATTAATTATGAAAAAGTGGTCCAGTTGAACATAACTCAGTGAACTTAACTGACCAAGA
131 ATTATTAATTAATTATGAAAAAGTGGTCCAGTTGAACATAACTCAGTGAACTTAACTGACCAAGA
40014274 AATGGACAGCCCAAACACCATCCCAAGAGCTAACCCAAATCAGCTTATTAGCTGATTATTTAAGC
196 AATGGACAGCCCAAACACCATCCCAAGAGCTAACCCAAATCAGCTTATTAGCTGATTATTTAAGC
40014339 TTG
261 TTG
40014342 CAAA
1 CAAA
40014346 GAGGCCCTTG
Statistics
Matches: 267, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
263 267 1.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (263 bp):
CAAAATCGAGAAGCACTTTCAAGTATCGAGGCGAACTAAATTTTAGCCTAAGAAGGTCCAAAATT
ATATGTATTAATTCATAATATAATTAATTTTAGTTTATATCCAATTTAATTTTGGTTAATAACTT
ATTATTAATTAATTATGAAAAAGTGGTCCAGTTGAACATAACTCAGTGAACTTAACTGACCAAGA
AATGGACAGCCCAAACACCATCCCAAGAGCTAACCCAAATCAGCTTATTAGCTGATTATTTAAGC
TTG
Found at i:40027565 original size:21 final size:23
Alignment explanation
Indices: 40027541--40027590 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 23
40027531 GTTGCAAAAA
* *
40027541 TTATTTAATTGAA-AAATTA-AT
1 TTATTTAATTAAATAAATAATAT
*
40027562 TTATCTAATTAAATAAATAATAT
1 TTATTTAATTAAATAAATAATAT
40027585 TTATTT
1 TTATTT
40027591 TGGGAAATAG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 11 0.48
22 5 0.22
23 7 0.30
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (23 bp):
TTATTTAATTAAATAAATAATAT
Found at i:40027957 original size:19 final size:19
Alignment explanation
Indices: 40027918--40027957 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
40027908 AAAATAGTGA
* * *
40027918 AAATTTATTTTCTATGTAT
1 AAATTAATTTTCTAGGAAT
40027937 AAATTAATTTTCTAGGAAT
1 AAATTAATTTTCTAGGAAT
40027956 AA
1 AA
40027958 CAATTTTGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.47
Consensus pattern (19 bp):
AAATTAATTTTCTAGGAAT
Found at i:40038457 original size:39 final size:40
Alignment explanation
Indices: 40038362--40038584 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
40038352 TTGAATGATG
*
40038362 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
40038400 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
40038441 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
40038480 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
40038519 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
40038558 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
40038585 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:40038548 original size:79 final size:81
Alignment explanation
Indices: 40038362--40038584 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
40038352 TTGAATGATG
* * *
40038362 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
40038424 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
40038441 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
40038502 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
40038519 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
40038583 TG
66 TG
40038585 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:40038606 original size:79 final size:79
Alignment explanation
Indices: 40038362--40038617 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
40038352 TTGAATGATG
* * * *
40038362 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
40038423 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
40038441 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
40038505 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
40038519 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
40038582 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
40038599 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
40038618 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:40044594 original size:18 final size:19
Alignment explanation
Indices: 40044563--40044602 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
40044553 GGAATTTTGG
40044563 AATGGAGAAGAAGAGAGAA
1 AATGGAGAAGAAGAGAGAA
*
40044582 AATGGAG-AGAAGAGAGGA
1 AATGGAGAAGAAGAGAGAA
40044600 AAT
1 AAT
40044603 ATGTGAATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.55, C:0.00, G:0.38, T:0.07
Consensus pattern (19 bp):
AATGGAGAAGAAGAGAGAA
Found at i:40044932 original size:14 final size:14
Alignment explanation
Indices: 40044913--40044939 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
40044903 CATTTCTTGG
40044913 TCGGTTCAGTTCAC
1 TCGGTTCAGTTCAC
40044927 TCGGTTCAGTTCA
1 TCGGTTCAGTTCA
40044940 ACTAGACCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (14 bp):
TCGGTTCAGTTCAC
Found at i:40059051 original size:40 final size:40
Alignment explanation
Indices: 40058953--40059215 Score: 300
Period size: 40 Copynumber: 6.6 Consensus size: 40
40058943 TCCTCGTTCA
* * * ** *
40058953 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
40058992 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
40059032 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
40059072 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
40059112 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
40059152 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
40059192 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
40059216 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:40066901 original size:27 final size:27
Alignment explanation
Indices: 40066871--40067048 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
40066861 ATATTGAGTC
* * * *
40066871 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
40066898 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
40066925 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
40066953 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
40066980 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
40067007 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
40067034 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
40067049 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:40067010 original size:82 final size:81
Alignment explanation
Indices: 40066892--40067047 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
40066882 TGCTATATAA
* *
40066892 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
40066957 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
40066974 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
40067038 CACTTAGTGC
65 CACTTAGTGC
40067048 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:40074173 original size:13 final size:13
Alignment explanation
Indices: 40074155--40074180 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
40074145 TTAATTATCA
40074155 CTTAATTAATATT
1 CTTAATTAATATT
40074168 CTTAATTAATATT
1 CTTAATTAATATT
40074181 AGATTTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (13 bp):
CTTAATTAATATT
Found at i:40082447 original size:262 final size:262
Alignment explanation
Indices: 40081982--40082510 Score: 1004
Period size: 262 Copynumber: 2.0 Consensus size: 262
40081972 GCCATTTCTT
*
40081982 TCATTTACCAACATTTCCATAACAAAAATTCAAGAAGAGTCTTTATGGCCTTACTTTAAACCAAT
1 TCATTTACCAACATTTCCATAACAAAAATTCAAGAAGAGTCTGTATGGCCTTACTTTAAACCAAT
*
40082047 TTTCCAAACTTCATGATTATACATATGTTTCCACAGGTATTAATATGTTAACTCTATCGATAATT
66 ATTCCAAACTTCATGATTATACATATGTTTCCACAGGTATTAATATGTTAACTCTATCGATAATT
*
40082112 AGCAGGAATTGATTAATTCATCTCATTCTTTGCCATTATGACATCATTTGCATTTTCAAATTAAT
131 AGCAGGAATTGATTAATTCATCTCATTCTTTGCCACTATGACATCATTTGCATTTTCAAATTAAT
*
40082177 AACATAATTCATACTTATCAAATCAACCTTATTAATACTTTCGTGACAACCAAAGTTTCATAATA
196 AACATAATTCATACTTATCAAATCAACCTTATTAATACTTCCGTGACAACCAAAGTTTCATAATA
40082242 CC
261 CC
40082244 TCATTTACCAACATTTCCATAACAAAAATTCAAGAAGAGTCTGTATGGCCTTACTTTAAACCAAT
1 TCATTTACCAACATTTCCATAACAAAAATTCAAGAAGAGTCTGTATGGCCTTACTTTAAACCAAT
*
40082309 ATTCCAAACTTCATGATTATACATATGTTTCCACAGGTATTAATATGTTGACTCTATCGATAATT
66 ATTCCAAACTTCATGATTATACATATGTTTCCACAGGTATTAATATGTTAACTCTATCGATAATT
*
40082374 AGTAGGAATTGATTAATTCATCTCATTCTTTGCCACTATGACATCATTTGCATTTTCAAATTAAT
131 AGCAGGAATTGATTAATTCATCTCATTCTTTGCCACTATGACATCATTTGCATTTTCAAATTAAT
40082439 AACATAATTCATACTTATCAAATCAACCTTATTAATACTTCCGTGACAACCAAAGTTTCATAATA
196 AACATAATTCATACTTATCAAATCAACCTTATTAATACTTCCGTGACAACCAAAGTTTCATAATA
40082504 CC
261 CC
40082506 TCATT
1 TCATT
40082511 GATTAATATG
Statistics
Matches: 261, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
262 261 1.00
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (262 bp):
TCATTTACCAACATTTCCATAACAAAAATTCAAGAAGAGTCTGTATGGCCTTACTTTAAACCAAT
ATTCCAAACTTCATGATTATACATATGTTTCCACAGGTATTAATATGTTAACTCTATCGATAATT
AGCAGGAATTGATTAATTCATCTCATTCTTTGCCACTATGACATCATTTGCATTTTCAAATTAAT
AACATAATTCATACTTATCAAATCAACCTTATTAATACTTCCGTGACAACCAAAGTTTCATAATA
CC
Found at i:40107178 original size:27 final size:27
Alignment explanation
Indices: 40107147--40107324 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
40107137 TAAATTGTAC
40107147 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
40107174 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
40107200 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
40107228 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
40107256 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
40107283 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
40107310 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
40107325 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:40107261 original size:82 final size:81
Alignment explanation
Indices: 40107148--40107303 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
40107138 AAATTGTACA
* *
40107148 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
40107212 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
40107229 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
40107294 TGCGAGTTGA
65 TGCGAATTGA
40107304 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:40107315 original size:82 final size:81
Alignment explanation
Indices: 40107144--40107324 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
40107134 GATTAAATTG
* *
40107144 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
40107209 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
40107225 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
40107289 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
40107307 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
40107325 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:40115368 original size:27 final size:27
Alignment explanation
Indices: 40115337--40115514 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
40115327 TAAATTGTAC
40115337 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
40115364 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
40115390 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
40115418 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
40115446 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
40115473 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
40115500 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
40115515 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:40115451 original size:82 final size:81
Alignment explanation
Indices: 40115338--40115493 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
40115328 AAATTGTACA
* *
40115338 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
40115402 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
40115419 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
40115484 TGCGAGTTGA
65 TGCGAATTGA
40115494 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:40115505 original size:82 final size:81
Alignment explanation
Indices: 40115334--40115514 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
40115324 GATTAAATTG
* *
40115334 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
40115399 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
40115415 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
40115479 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
40115497 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
40115515 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:40117299 original size:29 final size:28
Alignment explanation
Indices: 40117256--40117330 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 28
40117246 CAAAACCTAT
*
40117256 AACCACATATATATATGTTATATATAATAA
1 AACCACACATATATA--TTATATATAATAA
* * *
40117286 AACCCACACATATATATTATGTATAGTAG
1 AA-CCACACATATATATTATATATAATAA
*
40117315 AACCATACATATATAT
1 AACCACACATATATAT
40117331 GTACTATGTA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
28 13 0.33
29 12 0.31
30 2 0.05
31 12 0.31
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (28 bp):
AACCACACATATATATTATATATAATAA
Found at i:40117425 original size:30 final size:29
Alignment explanation
Indices: 40117391--40117447 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
40117381 ATGCACGTAA
*
40117391 ATATATATTATATATAACACCAAAACCCAT
1 ATATATATTATATA-AACAACAAAACCCAT
* *
40117421 ATATATTTTATATAAATAACAAAACCC
1 ATATATATTATATAAACAACAAAACCC
40117448 CTCTACGCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.32
Consensus pattern (29 bp):
ATATATATTATATAAACAACAAAACCCAT
Found at i:40118981 original size:254 final size:254
Alignment explanation
Indices: 40118532--40119041 Score: 1020
Period size: 254 Copynumber: 2.0 Consensus size: 254
40118522 TTGAGCTTAG
40118532 ATTTTGATGATCTTTTGAAGGGTTGTGGGATTGTCTCACAACTTACTCCTCCTGGTACTTCTCAA
1 ATTTTGATGATCTTTTGAAGGGTTGTGGGATTGTCTCACAACTTACTCCTCCTGGTACTTCTCAA
40118597 TGGAATGGAGTTTCTCAGAGAAGAAATCGAACTTTGTTAGACATGGTTCGATCCATGATGAGTCA
66 TGGAATGGAGTTTCTCAGAGAAGAAATCGAACTTTGTTAGACATGGTTCGATCCATGATGAGTCA
40118662 TGCTGATCGACTGACTTTCTTTTGGGGAAATGCACTTGAGACAGCTACTTTCACTCTAAATCGTG
131 TGCTGATCGACTGACTTTCTTTTGGGGAAATGCACTTGAGACAGCTACTTTCACTCTAAATCGTG
40118727 TTCCCTCTAAATCAGTTCAAAAGACGCCATATGAGATGTGGACTGGGAAACGTCCCGGT
196 TTCCCTCTAAATCAGTTCAAAAGACGCCATATGAGATGTGGACTGGGAAACGTCCCGGT
40118786 ATTTTGATGATCTTTTGAAGGGTTGTGGGATTGTCTCACAACTTACTCCTCCTGGTACTTCTCAA
1 ATTTTGATGATCTTTTGAAGGGTTGTGGGATTGTCTCACAACTTACTCCTCCTGGTACTTCTCAA
40118851 TGGAATGGAGTTTCTCAGAGAAGAAATCGAACTTTGTTAGACATGGTTCGATCCATGATGAGTCA
66 TGGAATGGAGTTTCTCAGAGAAGAAATCGAACTTTGTTAGACATGGTTCGATCCATGATGAGTCA
40118916 TGCTGATCGACTGACTTTCTTTTGGGGAAATGCACTTGAGACAGCTACTTTCACTCTAAATCGTG
131 TGCTGATCGACTGACTTTCTTTTGGGGAAATGCACTTGAGACAGCTACTTTCACTCTAAATCGTG
40118981 TTCCCTCTAAATCAGTTCAAAAGACGCCATATGAGATGTGGACTGGGAAACGTCCCGGT
196 TTCCCTCTAAATCAGTTCAAAAGACGCCATATGAGATGTGGACTGGGAAACGTCCCGGT
40119040 AT
1 AT
40119042 GTCTTTTATG
Statistics
Matches: 256, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
254 256 1.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.32
Consensus pattern (254 bp):
ATTTTGATGATCTTTTGAAGGGTTGTGGGATTGTCTCACAACTTACTCCTCCTGGTACTTCTCAA
TGGAATGGAGTTTCTCAGAGAAGAAATCGAACTTTGTTAGACATGGTTCGATCCATGATGAGTCA
TGCTGATCGACTGACTTTCTTTTGGGGAAATGCACTTGAGACAGCTACTTTCACTCTAAATCGTG
TTCCCTCTAAATCAGTTCAAAAGACGCCATATGAGATGTGGACTGGGAAACGTCCCGGT
Found at i:40122031 original size:18 final size:18
Alignment explanation
Indices: 40122010--40122044 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
40122000 TTTTTCTTTT
40122010 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTT-TCAATC
40122028 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTTTCAAT
40122045 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (18 bp):
TCAATTTCTTTTTCAATC
Found at i:40124955 original size:18 final size:18
Alignment explanation
Indices: 40124934--40124968 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
40124924 TTTTTCTTTT
40124934 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTT-TCAATC
40124952 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTTTCAAT
40124969 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (18 bp):
TCAATTTCTTTTTCAATC
Found at i:40129785 original size:70 final size:70
Alignment explanation
Indices: 40129672--40129812 Score: 282
Period size: 70 Copynumber: 2.0 Consensus size: 70
40129662 TTTAATTTCG
40129672 TGATTTTTGGAGATCGGGAACACCTCAAACGAAGTTGTCAAGTTACTCCGCAGTTTTTCGGGTTT
1 TGATTTTTGGAGATCGGGAACACCTCAAACGAAGTTGTCAAGTTACTCCGCAGTTTTTCGGGTTT
40129737 TCTAT
66 TCTAT
40129742 TGATTTTTGGAGATCGGGAACACCTCAAACGAAGTTGTCAAGTTACTCCGCAGTTTTTCGGGTTT
1 TGATTTTTGGAGATCGGGAACACCTCAAACGAAGTTGTCAAGTTACTCCGCAGTTTTTCGGGTTT
40129807 TCTAT
66 TCTAT
40129812 T
1 T
40129813 TTCAGCAATT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (70 bp):
TGATTTTTGGAGATCGGGAACACCTCAAACGAAGTTGTCAAGTTACTCCGCAGTTTTTCGGGTTT
TCTAT
Found at i:40133125 original size:13 final size:13
Alignment explanation
Indices: 40133107--40133131 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
40133097 TGGTCATCAT
40133107 GGTGTGAACACAA
1 GGTGTGAACACAA
40133120 GGTGTGAACACA
1 GGTGTGAACACA
40133132 TGATCAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (13 bp):
GGTGTGAACACAA
Found at i:40134587 original size:20 final size:20
Alignment explanation
Indices: 40134541--40134587 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
40134531 AGCTCGTTTC
*
40134541 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
40134561 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
40134581 CAGCTCA
1 CAGCTCA
40134588 ATTTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:40140018 original size:173 final size:172
Alignment explanation
Indices: 40139730--40140073 Score: 494
Period size: 173 Copynumber: 2.0 Consensus size: 172
40139720 GAAAATAAAT
* * *
40139730 CTTGATTTTCTTTATCTTTCGTGTACACATCTAAGGCCCTGCTAACAAATTCTAAATGGTACCAT
1 CTTGATTTTCTTTATCTTTCGTATACACATCTAAGGCCCTGCTAACAAAGTCTAAATGATACCAT
* *
40139795 TTAGTTTTGAACGCATTTGTCTGGCCTTTGACCTCGTTATTGGGCCTTGTGGTAATTTGAGCCCA
66 TTAGTTTTCAACGCATTTGTCTAGCCTTTGACCTCGTTATTGGGCCTTGTGGTAATTTGAGCCCA
* * **
40139860 TCATGTTCTTGAACTTGGGTTGGGCCTTTGTGACTCGTATCA
131 TCACGTCCTTGAACTTGAATTGGGCCTTTGTGACTCGTATCA
* * * ** * *
40139902 CTTGATTTTCTTTTTCCTTT-GTATACGCATCTAAGGCCTTGCTAATGAAGTCTTGAATGATTCC
1 CTTGATTTTCTTTAT-CTTTCGTATACACATCTAAGGCCCTGCTAACAAAGTC-TAAATGATACC
40139966 ATTTAG-TTTCATACGCATTTGTCTAGCCTTTGACCTCGTTATTGGGCCTTGTGGTAATTTGAGC
64 ATTTAGTTTTCA-ACGCATTTGTCTAGCCTTTGACCTCGTTATTGGGCCTTGTGGTAATTTGAGC
*
40140030 CCATCACGTCCTTGAGCTTGAATTGGGCCTTTGTGACTCGTATC
128 CCATCACGTCCTTGAACTTGAATTGGGCCTTTGTGACTCGTATC
40140074 GCTTAGCATG
Statistics
Matches: 152, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
172 44 0.29
173 108 0.71
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.40
Consensus pattern (172 bp):
CTTGATTTTCTTTATCTTTCGTATACACATCTAAGGCCCTGCTAACAAAGTCTAAATGATACCAT
TTAGTTTTCAACGCATTTGTCTAGCCTTTGACCTCGTTATTGGGCCTTGTGGTAATTTGAGCCCA
TCACGTCCTTGAACTTGAATTGGGCCTTTGTGACTCGTATCA
Found at i:40142296 original size:14 final size:13
Alignment explanation
Indices: 40142272--40142310 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
40142262 GGATATCAAG
*
40142272 TTGTGAAAAAAAA
1 TTGTAAAAAAAAA
40142285 TTCGTAAAAAAAAA
1 TT-GTAAAAAAAAA
40142299 TTGTAAAAAAAA
1 TTGTAAAAAAAA
40142311 GCTAGTTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.64, C:0.03, G:0.10, T:0.23
Consensus pattern (13 bp):
TTGTAAAAAAAAA
Found at i:40157925 original size:12 final size:12
Alignment explanation
Indices: 40157908--40157939 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
40157898 CGTATGCAAT
40157908 TTTTTTTTCAAA
1 TTTTTTTTCAAA
40157920 TTTTTTTTCAAA
1 TTTTTTTTCAAA
40157932 TTTTTTTT
1 TTTTTTTT
40157940 GATTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTTTTTTCAAA
Found at i:40158987 original size:13 final size:13
Alignment explanation
Indices: 40158969--40158993 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
40158959 TGGTCATCAT
40158969 GGTGTGAACACAA
1 GGTGTGAACACAA
40158982 GGTGTGAACACA
1 GGTGTGAACACA
40158994 TGATCAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (13 bp):
GGTGTGAACACAA
Found at i:40159512 original size:10 final size:10
Alignment explanation
Indices: 40159499--40159536 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
40159489 TTGTAGCTAA
40159499 ATTGAGCTCG
1 ATTGAGCTCG
40159509 ATTGAGCT-G
1 ATTGAGCTCG
40159518 ACTTGAGCTCG
1 A-TTGAGCTCG
*
40159529 AGTGAGCT
1 ATTGAGCT
40159537 GGAAACGAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (10 bp):
ATTGAGCTCG
Found at i:40159516 original size:20 final size:20
Alignment explanation
Indices: 40159476--40159536 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
40159466 ACCAATAAAA
40159476 TAAA-TGAGCT-GAATTGTAGC
1 TAAATTGAGCTCG-ATTG-AGC
40159496 TAAATTGAGCTCGATTGAGC
1 TAAATTGAGCTCGATTGAGC
* * *
40159516 TGACTTGAGCTCGAGTGAGC
1 TAAATTGAGCTCGATTGAGC
40159536 T
1 T
40159537 GGAAACGAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 25 0.69
21 10 0.28
22 1 0.03
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (20 bp):
TAAATTGAGCTCGATTGAGC
Found at i:40159537 original size:20 final size:20
Alignment explanation
Indices: 40159500--40159537 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
40159490 TGTAGCTAAA
*
40159500 TTGAGCTCGATTGAGCTGAC
1 TTGAGCTCGAGTGAGCTGAC
40159520 TTGAGCTCGAGTGAGCTG
1 TTGAGCTCGAGTGAGCTG
40159538 GAAACGAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.34, T:0.29
Consensus pattern (20 bp):
TTGAGCTCGAGTGAGCTGAC
Found at i:40159897 original size:33 final size:32
Alignment explanation
Indices: 40159859--40159929 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 32
40159849 TAATTAAATA
*
40159859 ATTTAACTAGGTGTTAATTGTGTCTTTAAGTC
1 ATTTAACTAGGTGTTAATTGTGCCTTTAAGTC
40159891 ACTTTAACTAGGTGTTAATTGTGCCTTTAAGTC
1 A-TTTAACTAGGTGTTAATTGTGCCTTTAAGTC
40159924 ATTTAA
1 ATTTAA
40159930 TGTGTCTTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
32 6 0.16
33 31 0.84
ACGTcount: A:0.27, C:0.11, G:0.17, T:0.45
Consensus pattern (32 bp):
ATTTAACTAGGTGTTAATTGTGCCTTTAAGTC
Found at i:40161344 original size:32 final size:32
Alignment explanation
Indices: 40161303--40161372 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
40161293 TAAAATTAAA
* *
40161303 TGAACTAAAGAGCTAATAATGAGCTCAATTAGC
1 TGAA-TAAAGAGCTAATAACGAGCTCAATGAGC
*
40161336 TGAATAAAGAGCTAATAACGAGCTCAATGAGT
1 TGAATAAAGAGCTAATAACGAGCTCAATGAGC
40161368 TGAAT
1 TGAAT
40161373 TGAGCTCGTG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 30 0.88
33 4 0.12
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.24
Consensus pattern (32 bp):
TGAATAAAGAGCTAATAACGAGCTCAATGAGC
Found at i:40161407 original size:20 final size:20
Alignment explanation
Indices: 40161384--40161428 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
40161374 GAGCTCGTGG
*
40161384 GAGCTCACTTGACCTCGAA-T
1 GAGCTAACTTGACCTC-AAGT
*
40161404 GAGCTAACTTGAGCTCAAGT
1 GAGCTAACTTGACCTCAAGT
40161424 GAGCT
1 GAGCT
40161429 GAACCGCATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (20 bp):
GAGCTAACTTGACCTCAAGT
Found at i:40164083 original size:16 final size:14
Alignment explanation
Indices: 40164060--40164102 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
40164050 TTGTAAATTT
40164060 TCTTTCTTTTTCAC
1 TCTTTCTTTTTCAC
*
40164074 TCGATTTCTTTTCCCAC
1 TC--TTTCTTTT-TCAC
40164091 TCTTTCTTTTTC
1 TCTTTCTTTTTC
40164103 TTCTCTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
14 3 0.12
15 8 0.33
16 8 0.33
17 5 0.21
ACGTcount: A:0.07, C:0.30, G:0.02, T:0.60
Consensus pattern (14 bp):
TCTTTCTTTTTCAC
Found at i:40164140 original size:18 final size:18
Alignment explanation
Indices: 40164114--40164153 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
40164104 TCTCTTTCAA
* *
40164114 TTTCTTTTTCAATCTCTT
1 TTTCCTTTTCAATCACTT
*
40164132 TTTCCTTTTCACTCACTT
1 TTTCCTTTTCAATCACTT
40164150 TTTC
1 TTTC
40164154 AATTTCCTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.10, C:0.28, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTCCTTTTCAATCACTT
Found at i:40164168 original size:18 final size:18
Alignment explanation
Indices: 40164147--40164204 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
40164137 TTTTCACTCA
*
40164147 CTTTTTCAATTTCCTTTT
1 CTTTTTCAATTTCTTTTT
* *
40164165 CTTTTGCAGTTTCTTTTT
1 CTTTTTCAATTTCTTTTT
*
40164183 CTTTTTCAATGTCTTTTT
1 CTTTTTCAATTTCTTTTT
40164201 CTTT
1 CTTT
40164205 CATTTCTCCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.09, C:0.19, G:0.05, T:0.67
Consensus pattern (18 bp):
CTTTTTCAATTTCTTTTT
Found at i:40164181 original size:30 final size:30
Alignment explanation
Indices: 40164108--40164183 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
40164098 TTTTCTTCTC
* *
40164108 TTTCAATTTCTTTTTCAATCTCTTTTTCCT
1 TTTCACTTTCTTTTTCAATCTCCTTTTCCT
** *
40164138 TTTCACTCACTTTTTCAATTTCCTTTT-CT
1 TTTCACTTTCTTTTTCAATCTCCTTTTCCT
*
40164167 TTTGCAGTTTCTTTTTC
1 TTT-CACTTTCTTTTTC
40164184 TTTTTCAATG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 5 0.14
30 32 0.86
ACGTcount: A:0.12, C:0.24, G:0.03, T:0.62
Consensus pattern (30 bp):
TTTCACTTTCTTTTTCAATCTCCTTTTCCT
Found at i:40164240 original size:37 final size:35
Alignment explanation
Indices: 40164197--40164302 Score: 122
Period size: 36 Copynumber: 2.9 Consensus size: 35
40164187 TTCAATGTCT
*
40164197 TTTTCTTTCATTTCTCCAAACTCACCTTCTTTTTCAA
1 TTTTCTTTC-GTTCT-CAAACTCACCTTCTTTTTCAA
* *
40164234 TTTTCTTTTCGTTCTCACACTCATCTTCTTTTTCAA
1 TTTTC-TTTCGTTCTCAAACTCACCTTCTTTTTCAA
* * *
40164270 TTTTCTTTTCGTCCTCACACTCATCTTCTTTTT
1 TTTTC-TTTCGTTCTCAAACTCACCTTCTTTTT
40164303 ATTTCGTTTC
Statistics
Matches: 64, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
36 51 0.80
37 9 0.14
38 4 0.06
ACGTcount: A:0.14, C:0.29, G:0.02, T:0.55
Consensus pattern (35 bp):
TTTTCTTTCGTTCTCAAACTCACCTTCTTTTTCAA
Found at i:40164243 original size:42 final size:40
Alignment explanation
Indices: 40164181--40164279 Score: 100
Period size: 36 Copynumber: 2.5 Consensus size: 40
40164171 CAGTTTCTTT
* *
40164181 TTCTTTTTCAA-TGTCTTTTTCTTTCATTTCTCCAAACTCACC
1 TTCTTTTTCAATTTTC-TTTTCTTTC-GTTCT-CAAACTCACC
* *
40164223 TTCTTTTTCAATTTTC---T-TTTCGTTCTCACACTCATC
1 TTCTTTTTCAATTTTCTTTTCTTTCGTTCTCAAACTCACC
40164259 TTCTTTTTCAATTTTCTTTTC
1 TTCTTTTTCAATTTTCTTTTC
40164280 GTCCTCACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
36 24 0.50
37 4 0.08
38 4 0.08
39 2 0.04
42 11 0.23
43 3 0.06
ACGTcount: A:0.14, C:0.26, G:0.02, T:0.58
Consensus pattern (40 bp):
TTCTTTTTCAATTTTCTTTTCTTTCGTTCTCAAACTCACC
Found at i:40164263 original size:36 final size:36
Alignment explanation
Indices: 40164216--40164302 Score: 156
Period size: 36 Copynumber: 2.4 Consensus size: 36
40164206 ATTTCTCCAA
* *
40164216 ACTCACCTTCTTTTTCAATTTTCTTTTCGTTCTCAC
1 ACTCATCTTCTTTTTCAATTTTCTTTTCGTCCTCAC
40164252 ACTCATCTTCTTTTTCAATTTTCTTTTCGTCCTCAC
1 ACTCATCTTCTTTTTCAATTTTCTTTTCGTCCTCAC
40164288 ACTCATCTTCTTTTT
1 ACTCATCTTCTTTTT
40164303 ATTTCGTTTC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.14, C:0.30, G:0.02, T:0.54
Consensus pattern (36 bp):
ACTCATCTTCTTTTTCAATTTTCTTTTCGTCCTCAC
Found at i:40165386 original size:10 final size:10
Alignment explanation
Indices: 40165371--40165407 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
40165361 AAAATAAACT
40165371 TTTTTTTGAA
1 TTTTTTTGAA
40165381 TTTTTTTCG-A
1 TTTTTTT-GAA
40165391 TTTTTTTGAA
1 TTTTTTTGAA
40165401 TTTTTTT
1 TTTTTTT
40165408 ACAATGACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 1 0.04
10 23 0.92
11 1 0.04
ACGTcount: A:0.14, C:0.03, G:0.08, T:0.76
Consensus pattern (10 bp):
TTTTTTTGAA
Found at i:40169226 original size:28 final size:27
Alignment explanation
Indices: 40169165--40169228 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 27
40169155 TATTAATTCT
*
40169165 TGTAATAATTTAAAACATATTAAACAC
1 TGTAATAAATTAAAACATATTAAACAC
*
40169192 TCATAATAAATTAAAACATAATTAAA-AC
1 T-GTAATAAATTAAAACAT-ATTAAACAC
40169220 ATGTAATAA
1 -TGTAATAA
40169229 GCTGACAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 1 0.03
28 23 0.74
29 7 0.23
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.31
Consensus pattern (27 bp):
TGTAATAAATTAAAACATATTAAACAC
Found at i:40169380 original size:20 final size:20
Alignment explanation
Indices: 40169357--40169401 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
40169347 GAGCTCGTGG
*
40169357 GAGCTCACTTGACCTCGAA-T
1 GAGCTAACTTGACCTC-AAGT
*
40169377 GAGCTAACTTGAGCTCAAGT
1 GAGCTAACTTGACCTCAAGT
40169397 GAGCT
1 GAGCT
40169402 GAACCACATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (20 bp):
GAGCTAACTTGACCTCAAGT
Found at i:40175739 original size:24 final size:25
Alignment explanation
Indices: 40175710--40175768 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 25
40175700 TGGTCTATTA
** *
40175710 CGTACCAAAATTTCCA-TACCATTT
1 CGTACCAAAATCCCCATTACCATAT
40175734 CGTACC-AAA-CCCCATTACCATAT
1 CGTACCAAAATCCCCATTACCATAT
40175757 CGTACCAAAATC
1 CGTACCAAAATC
40175769 AACATTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 3 0.10
23 16 0.55
24 9 0.31
25 1 0.03
ACGTcount: A:0.36, C:0.34, G:0.05, T:0.25
Consensus pattern (25 bp):
CGTACCAAAATCCCCATTACCATAT
Found at i:40180425 original size:21 final size:20
Alignment explanation
Indices: 40180401--40180459 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 20
40180391 ATTTTCTCTT
*
40180401 CTTTCTTCAATTTCTTTTTCA
1 CTTT-TTCAATCTCTTTTTCA
*
40180422 C--TTTCAATCTCTTTTTTCT
1 CTTTTTCAATCTC-TTTTTCA
40180441 CTTTTTCAATCTCTTTTTC
1 CTTTTTCAATCTCTTTTTC
40180460 TTTTTCCTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
18 8 0.24
19 8 0.24
20 6 0.18
21 11 0.33
ACGTcount: A:0.12, C:0.25, G:0.00, T:0.63
Consensus pattern (20 bp):
CTTTTTCAATCTCTTTTTCA
Found at i:40180455 original size:12 final size:12
Alignment explanation
Indices: 40180423--40180459 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
40180413 TCTTTTTCAC
40180423 TTTCAATCTCTT
1 TTTCAATCTCTT
40180435 TTT---TCTCTT
1 TTTCAATCTCTT
40180444 TTTCAATCTCTT
1 TTTCAATCTCTT
40180456 TTTC
1 TTTC
40180460 TTTTTCCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
9 9 0.41
12 13 0.59
ACGTcount: A:0.11, C:0.24, G:0.00, T:0.65
Consensus pattern (12 bp):
TTTCAATCTCTT
Found at i:40180463 original size:18 final size:18
Alignment explanation
Indices: 40180399--40180465 Score: 71
Period size: 18 Copynumber: 3.5 Consensus size: 18
40180389 TCATTTTCTC
*
40180399 TTCTTTCTTCAATTTCTTT
1 TTCTTT-TTCAATCTCTTT
**
40180418 TTCACTTTCAATCTCTTTTT
1 TTCTTTTTCAATCTC--TTT
40180438 TCTCTTTTTCAATCTCTTT
1 T-TCTTTTTCAATCTCTTT
40180457 TTCTTTTTC
1 TTCTTTTTC
40180466 CTCACTTGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
18 16 0.40
19 8 0.20
20 4 0.10
21 12 0.30
ACGTcount: A:0.10, C:0.24, G:0.00, T:0.66
Consensus pattern (18 bp):
TTCTTTTTCAATCTCTTT
Found at i:40191160 original size:28 final size:28
Alignment explanation
Indices: 40191103--40191282 Score: 294
Period size: 28 Copynumber: 6.5 Consensus size: 28
40191093 TAAATTGTGC
*
40191103 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
40191130 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
40191158 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
40191186 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
40191213 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
40191241 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
40191268 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
40191283 GACTTAATAT
Statistics
Matches: 147, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
27 66 0.45
28 81 0.55
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:40191168 original size:55 final size:55
Alignment explanation
Indices: 40191103--40191282 Score: 299
Period size: 55 Copynumber: 3.3 Consensus size: 55
40191093 TAAATTGTGC
*
40191103 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
40191158 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * *
40191213 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
40191268 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
40191283 GACTTAATAT
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 92 0.77
56 27 0.23
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:40191218 original size:83 final size:82
Alignment explanation
Indices: 40191103--40191282 Score: 306
Period size: 83 Copynumber: 2.2 Consensus size: 82
40191093 TAAATTGTGC
40191103 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
40191168 GTGCGAGTTTGACTATGT
66 GTGCGAG-TTGACTATAT
* *
40191186 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
40191251 GTGCGAGTTGATTATAT
66 GTGCGAGTTGACTATAT
*
40191268 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
40191283 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
82 22 0.24
83 70 0.76
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATAT
Found at i:40197635 original size:22 final size:23
Alignment explanation
Indices: 40197610--40197658 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
40197600 ATCAACTTCT
40197610 TTAATAC-ACCTATTAAGACACA
1 TTAATACGACCTATTAAGACACA
* *
40197632 TTAA-ACGACTTATTAGGACACA
1 TTAATACGACCTATTAAGACACA
40197654 TTAAT
1 TTAAT
40197659 CATACCAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (23 bp):
TTAATACGACCTATTAAGACACA
Found at i:40199928 original size:29 final size:29
Alignment explanation
Indices: 40199895--40199953 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
40199885 TAGCCATGCC
40199895 AAAGGCTATTCATTGTCAAACATCCCCCT
1 AAAGGCTATTCATTGTCAAACATCCCCCT
40199924 AAAGGCTATTCATTGTCAAACATCCCCCT
1 AAAGGCTATTCATTGTCAAACATCCCCCT
40199953 A
1 A
40199954 CTACACTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.32, C:0.31, G:0.10, T:0.27
Consensus pattern (29 bp):
AAAGGCTATTCATTGTCAAACATCCCCCT
Found at i:40200787 original size:29 final size:29
Alignment explanation
Indices: 40200724--40200791 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
40200714 TAATCAACCG
40200724 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
40200753 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
40200782 CGCACACTTA
1 CGCACACTTA
40200792 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:40200933 original size:28 final size:28
Alignment explanation
Indices: 40200870--40200992 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
40200860 ATATTAAGTC
*
40200870 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
40200897 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
40200925 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
40200953 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
40200982 CGCACACTTAG
1 CGCACACTTAG
40200993 CGCCAATCTC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.25
28 49 0.56
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:40213854 original size:383 final size:384
Alignment explanation
Indices: 40213141--40213906 Score: 1295
Period size: 383 Copynumber: 2.0 Consensus size: 384
40213131 TGTTCTTGAG
* *
40213141 CTTGGGTTGGGCCTTTTTGACTCGTATCAATATATATAGGCCTCATGACAACTTTCCTAGCCCTA
1 CTTGAGTTGGGCCTTTGTGACTCGTATCAATATATATAGGCCTCATGACAACTTTCCTAGCCCTA
*
40213206 CTAGGAAAACTTAAAAAAAAACTTAATTGTTGACTTTCAAGAGGAGTTCCATCCAAGGCTTTTAA
66 CTAGGAAAACTTAAAAAAAAACTTAATTGTTGACTTTCAAGAGGAGTGCCATCCAAGGCTTTTAA
* *
40213271 ATGGGCCTCTTGGACTAAATTTTTACATAGAAATTCATTCATAAAGCCTAAAAATTAAAACTAAG
131 ATGGCCCTCTTGGACTAAATTTTTACATAGAAATTCATTCATAAAGCCTAAAAATTAAAACCAAG
*
40213336 TATTTAAAGAACTAAAATTTTACAAATTGGGCCACTTTCACAATTTGGCCTGATTTTCAACTAAG
196 TATTTAAAGAACTAAAATTTTACAAATTGGGCCACTTTCACAATTTGGCCTAATTTTCAACTAAG
*
40213401 TCTAATTTAAACTTCTTGGTTGGGCATGGAACATCTTATTGGGTCGTATCTTCAAGAACTTGGGC
261 TCTAATTTAAACTTCTTGGTTGGGCATGGAACATCTTAATGGGTCGTATCTTCAAGAACTTGGGC
* * *
40213466 TTGTAATCCGTTCTCTCCCGAAATTGGCTCGTTGATGCTTGTAACCGAGATCCAATGCA
326 TTGTAATCCATTCTCTCCCGAAATTGGCTCGTTGATGCTCGTAACCGAGACCCAATGCA
* *
40213525 CTTGAGTTGGGCCTTTGTGACTCGTATCAATATATATAGGCCTCCTGACTACTTTCCTAGCCCTA
1 CTTGAGTTGGGCCTTTGTGACTCGTATCAATATATATAGGCCTCATGACAACTTTCCTAGCCCTA
* *
40213590 CTAGGAAAACTT-AAAAAAAACTTAATTGTTGACTTTCAAGAGGAGTGCCGTTCAAGGCTTTTAA
66 CTAGGAAAACTTAAAAAAAAACTTAATTGTTGACTTTCAAGAGGAGTGCCATCCAAGGCTTTTAA
40213654 ATGGCCCTCTTGGAC-AGAATTTTTACATAGAAATTCATTCATAAAGCCTAAAAATTAAAACCAA
131 ATGGCCCTCTTGGACTA-AATTTTTACATAGAAATTCATTCATAAAGCCTAAAAATTAAAACCAA
* *
40213718 GTATTTAAAGAATTAAAATTTTACAAATTGGGCCACTTTCACAATTTGGCCTAATTTTCAATTAA
195 GTATTTAAAGAACTAAAATTTTACAAATTGGGCCACTTTCACAATTTGGCCTAATTTTCAACTAA
* * * *
40213783 GTCTAATTTAAACTTCTTGGTTGGGCTTGGAACATCTTAATGGG-CTGTTTCTTCAAGCATTTGG
260 GTCTAATTTAAACTTCTTGGTTGGGCATGGAACATCTTAATGGGTC-GTATCTTCAAGAACTTGG
* *
40213847 GCTTGTAATCCATTCTCTCCCGAAATTGGTTCGTTGATGCTCGTAACTGAGACCCAATGC
324 GCTTGTAATCCATTCTCTCCCGAAATTGGCTCGTTGATGCTCGTAACCGAGACCCAATGC
40213907 GCTTTAGCTG
Statistics
Matches: 358, Mismatches: 22, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
382 2 0.01
383 283 0.79
384 73 0.20
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (384 bp):
CTTGAGTTGGGCCTTTGTGACTCGTATCAATATATATAGGCCTCATGACAACTTTCCTAGCCCTA
CTAGGAAAACTTAAAAAAAAACTTAATTGTTGACTTTCAAGAGGAGTGCCATCCAAGGCTTTTAA
ATGGCCCTCTTGGACTAAATTTTTACATAGAAATTCATTCATAAAGCCTAAAAATTAAAACCAAG
TATTTAAAGAACTAAAATTTTACAAATTGGGCCACTTTCACAATTTGGCCTAATTTTCAACTAAG
TCTAATTTAAACTTCTTGGTTGGGCATGGAACATCTTAATGGGTCGTATCTTCAAGAACTTGGGC
TTGTAATCCATTCTCTCCCGAAATTGGCTCGTTGATGCTCGTAACCGAGACCCAATGCA
Found at i:40216323 original size:21 final size:21
Alignment explanation
Indices: 40216297--40216359 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
40216287 TTGGTATTTG
40216297 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
40216318 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
40216339 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
40216360 ATGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:40218681 original size:21 final size:21
Alignment explanation
Indices: 40218630--40218686 Score: 53
Period size: 21 Copynumber: 2.7 Consensus size: 21
40218620 CTCAATCTCT
*
40218630 CTTCTTTC-TTTTCTTTTTCA
1 CTTCTTTCAATTTCTTTTTCA
* *
40218650 CTCTCTCTCAATTTCTTTTTCT
1 CT-TCTTTCAATTTCTTTTTCA
* *
40218672 GTTCTTTCAAATTCT
1 CTTCTTTCAATTTCT
40218687 CCAAAAATTG
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
20 2 0.07
21 16 0.55
22 11 0.38
ACGTcount: A:0.11, C:0.26, G:0.02, T:0.61
Consensus pattern (21 bp):
CTTCTTTCAATTTCTTTTTCA
Found at i:40220897 original size:18 final size:18
Alignment explanation
Indices: 40220876--40220911 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
40220866 TTTCAATTTT
40220876 TTTTGATTTTTTTTTCGA
1 TTTTGATTTTTTTTTCGA
40220894 TTTTGATTTTTTTTTCGA
1 TTTTGATTTTTTTTTCGA
40220912 ACTCCTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.06, G:0.11, T:0.72
Consensus pattern (18 bp):
TTTTGATTTTTTTTTCGA
Found at i:40221249 original size:21 final size:21
Alignment explanation
Indices: 40221223--40221285 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
40221213 TTGGTATTTG
40221223 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
40221244 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
40221265 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
40221286 ATGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:40233520 original size:13 final size:12
Alignment explanation
Indices: 40233487--40233518 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
40233477 AGGAAATTAG
40233487 AAAAAAAATTCA
1 AAAAAAAATTCA
40233499 AAAAAAAATTCA
1 AAAAAAAATTCA
40233511 AAAAAAAA
1 AAAAAAAA
40233519 ATCGAAGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.12
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:40235881 original size:21 final size:21
Alignment explanation
Indices: 40235832--40235898 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
40235822 CCTCTTTGAA
* * *
40235832 CCATAACCAATTCGTACCAAATA
1 CCAT-ACCATTTCATACC-AATT
*
40235855 CCATACTATTTCATACCAATT
1 CCATACCATTTCATACCAATT
*
40235876 CCATACCATTTCGTACCAATT
1 CCATACCATTTCATACCAATT
40235897 CC
1 CC
40235899 CAAATACCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 24 0.63
22 10 0.26
23 4 0.11
ACGTcount: A:0.34, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
CCATACCATTTCATACCAATT
Found at i:40238259 original size:20 final size:20
Alignment explanation
Indices: 40238213--40238259 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
40238203 AGCTCGTTTC
*
40238213 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
40238233 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
40238253 CAGCTCA
1 CAGCTCA
40238260 ATTTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:40240639 original size:407 final size:407
Alignment explanation
Indices: 40239884--40240697 Score: 1601
Period size: 407 Copynumber: 2.0 Consensus size: 407
40239874 CATTTGTCGG
* *
40239884 GCCTTTGATCTCGTTATTGGGCCTTGTGGCAATTTGAGCCCATCACGTTCTTGAACTTGGATTGG
1 GCCTTTGATCTCGTTATTGGGCCTTGTGGCAATTTGAGCACATCACATTCTTGAACTTGGATTGG
40239949 GCCTTTATGACTCGTATCATCTTTACTACTTCTGAGAATGGTGATTTTGAGAATTTTTCAAGGAA
66 GCCTTTATGACTCGTATCATCTTTACTACTTCTGAGAATGGTGATTTTGAGAATTTTTCAAGGAA
40240014 GTAAAGCTATGCATTCCTTAAGGTTCTATTCGGGACTTACTCGTGCACGAGGTGCACAACGGAGG
131 GTAAAGCTATGCATTCCTTAAGGTTCTATTCGGGACTTACTCGTGCACGAGGTGCACAACGGAGG
40240079 CCTCATGGGACATTTTGGAGTAAGCAAGACTTTGGCAACACTCCAAGAACACTTTTATTGGCCCA
196 CCTCATGGGACATTTTGGAGTAAGCAAGACTTTGGCAACACTCCAAGAACACTTTTATTGGCCCA
40240144 CAATGAGGAAATATGTTGAGTGAATTTGTGAGCAGTACATAACGTGTAAAAAGGCTAAGTCCAAG
261 CAATGAGGAAATATGTTGAGTGAATTTGTGAGCAGTACATAACGTGTAAAAAGGCTAAGTCCAAG
40240209 GTTCAACCTCATGGACTATACACCCCTTTGCCCATTCCCGAAGCACCCTAGATGGACATTTCCAT
326 GTTCAACCTCATGGACTATACACCCCTTTGCCCATTCCCGAAGCACCCTAGATGGACATTTCCAT
40240274 GGACTTTGTCCTTGGAT
391 GGACTTTGTCCTTGGAT
*
40240291 GCCTTTGATCTCGTTATTGGGCCTTGTGGTAATTTGAGCACATCACATTCTTGAACTTGGATTGG
1 GCCTTTGATCTCGTTATTGGGCCTTGTGGCAATTTGAGCACATCACATTCTTGAACTTGGATTGG
40240356 GCCTTTATGACTCGTATCATCTTTACTACTTCTGAGAATGGTGATTTTGAGAATTTTTCAAGGAA
66 GCCTTTATGACTCGTATCATCTTTACTACTTCTGAGAATGGTGATTTTGAGAATTTTTCAAGGAA
40240421 GTAAAGCTATGCATTCCTTAAGGTTCTATTCGGGACTTACTCGTGCACGAGGTGCACAACGGAGG
131 GTAAAGCTATGCATTCCTTAAGGTTCTATTCGGGACTTACTCGTGCACGAGGTGCACAACGGAGG
40240486 CCTCATGGGACATTTTGGAGTAAGCAAGACTTTGGCAACACTCCAAGAACACTTTTATTGGCCCA
196 CCTCATGGGACATTTTGGAGTAAGCAAGACTTTGGCAACACTCCAAGAACACTTTTATTGGCCCA
40240551 CAATGAGGAAATATGTTGAGTGAATTTGTGAGCAGTACATAACGTGTAAAAAGGCTAAGTCCAAG
261 CAATGAGGAAATATGTTGAGTGAATTTGTGAGCAGTACATAACGTGTAAAAAGGCTAAGTCCAAG
40240616 GTTCAACCTCATGGACTATACACCCCTTTGCCCATTCCCGAAGCACCCTAGATGGACATTTCCAT
326 GTTCAACCTCATGGACTATACACCCCTTTGCCCATTCCCGAAGCACCCTAGATGGACATTTCCAT
40240681 GGACTTTGTCCTTGGAT
391 GGACTTTGTCCTTGGAT
40240698 TGCCGCGAAC
Statistics
Matches: 404, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
407 404 1.00
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (407 bp):
GCCTTTGATCTCGTTATTGGGCCTTGTGGCAATTTGAGCACATCACATTCTTGAACTTGGATTGG
GCCTTTATGACTCGTATCATCTTTACTACTTCTGAGAATGGTGATTTTGAGAATTTTTCAAGGAA
GTAAAGCTATGCATTCCTTAAGGTTCTATTCGGGACTTACTCGTGCACGAGGTGCACAACGGAGG
CCTCATGGGACATTTTGGAGTAAGCAAGACTTTGGCAACACTCCAAGAACACTTTTATTGGCCCA
CAATGAGGAAATATGTTGAGTGAATTTGTGAGCAGTACATAACGTGTAAAAAGGCTAAGTCCAAG
GTTCAACCTCATGGACTATACACCCCTTTGCCCATTCCCGAAGCACCCTAGATGGACATTTCCAT
GGACTTTGTCCTTGGAT
Found at i:40241314 original size:30 final size:30
Alignment explanation
Indices: 40241278--40241361 Score: 109
Period size: 30 Copynumber: 2.8 Consensus size: 30
40241268 TGTTCACATC
**
40241278 CAGCTCAACTTCAGCTCATGAGCTTGTTCT
1 CAGCTCAACTTCAGCTCATGAGCTTGGACT
40241308 CAGCTCAACTTCAGCTC-TCGAGCTTGGACT
1 CAGCTCAACTTCAGCTCAT-GAGCTTGGACT
*
40241338 CAGCTC-ACTTCCAGCTCACGAGCT
1 CAGCTCAACTT-CAGCTCATGAGCT
40241362 CAAACTTAGC
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
29 5 0.10
30 43 0.90
ACGTcount: A:0.20, C:0.35, G:0.18, T:0.27
Consensus pattern (30 bp):
CAGCTCAACTTCAGCTCATGAGCTTGGACT
Found at i:40243373 original size:62 final size:61
Alignment explanation
Indices: 40243271--40243389 Score: 193
Period size: 62 Copynumber: 1.9 Consensus size: 61
40243261 GCGAAGTCCA
* *
40243271 AAACTAACATAAACAAGGGTTTACCAAGACAACCTGTAAGGAACGTAGCTCTCATAGTCTG
1 AAACTAACATAAACAAGGGATTACCAAGACAACCTATAAGGAACGTAGCTCTCATAGTCTG
* *
40243332 AAACGTAACATAAACGAGGGATTACCAAGACAACTTATAAGGAACGTAGCTCTCATAG
1 AAAC-TAACATAAACAAGGGATTACCAAGACAACCTATAAGGAACGTAGCTCTCATAG
40243390 GCAAAGTCCC
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
61 4 0.08
62 49 0.92
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.20
Consensus pattern (61 bp):
AAACTAACATAAACAAGGGATTACCAAGACAACCTATAAGGAACGTAGCTCTCATAGTCTG
Found at i:40247011 original size:13 final size:13
Alignment explanation
Indices: 40246978--40247022 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
40246968 TTAAAGAAGC
40246978 AACTCATTAAATTA
1 AACTCATTAAA-TA
*
40246992 AATTCATTAAATA
1 AACTCATTAAATA
*
40247005 AACTCATTTAATGA
1 AACTCATTAAAT-A
40247019 AACT
1 AACT
40247023 AAGATGATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 12 0.44
14 15 0.56
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (13 bp):
AACTCATTAAATA
Found at i:40254251 original size:38 final size:39
Alignment explanation
Indices: 40254200--40254278 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
40254190 CCATATTAAA
40254200 ATAATTAGGAGTTTTTTTAT-TTTTAGTTTTCTAATTAG
1 ATAATTAGGAGTTTTTTTATATTTTAGTTTTCTAATTAG
*
40254238 ATAATTAGGAGTTTTTTTTTATTTTAGTTTTCTAATTAG
1 ATAATTAGGAGTTTTTTTATATTTTAGTTTTCTAATTAG
40254277 AT
1 AT
40254279 TAGGACTAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
38 19 0.49
39 20 0.51
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.58
Consensus pattern (39 bp):
ATAATTAGGAGTTTTTTTATATTTTAGTTTTCTAATTAG
Found at i:40257257 original size:21 final size:19
Alignment explanation
Indices: 40257184--40257258 Score: 62
Period size: 21 Copynumber: 3.7 Consensus size: 19
40257174 GAGAAATGAA
40257184 AAAAAGAAATGAAAGAAAAAG
1 AAAAAGAAATG--AGAAAAAG
* *
40257205 AACAAGAAAT-CGAAAAAG
1 AAAAAGAAATGAGAAAAAG
* *
40257223 AAAATGAGAGTGAGAAAAAG
1 AAAAAGA-AATGAGAAAAAG
40257243 AAAAAAGAAATTGAGA
1 -AAAAAGAAA-TGAGA
40257259 TTGAAAAAGG
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
18 12 0.29
19 2 0.05
20 8 0.19
21 20 0.48
ACGTcount: A:0.68, C:0.03, G:0.21, T:0.08
Consensus pattern (19 bp):
AAAAAGAAATGAGAAAAAG
Found at i:40257282 original size:18 final size:18
Alignment explanation
Indices: 40257198--40257282 Score: 62
Period size: 18 Copynumber: 4.6 Consensus size: 18
40257188 AGAAATGAAA
* *
40257198 GAAAAAGAACAAGAAATC
1 GAAAAAGAAAAAGAAATT
* * *
40257216 GAAAAAGAAAATGAGAGTGA
1 GAAAAAGAAAAAGA-AAT-T
40257236 GAAAAAGAAAAAAGAAATT
1 GAAAAAG-AAAAAGAAATT
* ** *
40257255 GAGATTGAAAAAGGAATT
1 GAAAAAGAAAAAGAAATT
40257273 GAAAAAGAAA
1 GAAAAAGAAA
40257283 GAAAAGACAA
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
18 29 0.58
19 6 0.12
20 9 0.18
21 6 0.12
ACGTcount: A:0.65, C:0.02, G:0.22, T:0.11
Consensus pattern (18 bp):
GAAAAAGAAAAAGAAATT
Found at i:40258939 original size:20 final size:20
Alignment explanation
Indices: 40258911--40258967 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
40258901 AATCCTTGGT
40258911 TCAGCTCATTTGAGCTCAAG
1 TCAGCTCATTTGAGCTCAAG
* * *
40258931 TCAGGTCATTCGAGCTCAAT
1 TCAGCTCATTTGAGCTCAAG
*
40258951 TCAGCTCA-GTGAGCTCA
1 TCAGCTCATTTGAGCTCA
40258968 TTATTAGCTC
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
19 7 0.23
20 24 0.77
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (20 bp):
TCAGCTCATTTGAGCTCAAG
Found at i:40261867 original size:18 final size:19
Alignment explanation
Indices: 40261846--40261885 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
40261836 AAAGGAAGAC
40261846 AGAAAAAGA-AATCAAAAA
1 AGAAAAAGAGAATCAAAAA
*
40261864 AGAAAAAGAGAATGAAAAA
1 AGAAAAAGAGAATCAAAAA
40261883 AGA
1 AGA
40261886 GCAAAAAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.75, C:0.03, G:0.17, T:0.05
Consensus pattern (19 bp):
AGAAAAAGAGAATCAAAAA
Found at i:40261943 original size:12 final size:14
Alignment explanation
Indices: 40261920--40261952 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
40261910 GGACACAGAC
40261920 AAGAAGATTGAA-A
1 AAGAAGATTGAAGA
40261933 AAGAA-ATTGAAGA
1 AAGAAGATTGAAGA
40261946 AAGAAGA
1 AAGAAGA
40261953 AAAAATGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.33
13 11 0.61
14 1 0.06
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.12
Consensus pattern (14 bp):
AAGAAGATTGAAGA
Found at i:40263684 original size:33 final size:34
Alignment explanation
Indices: 40263646--40263710 Score: 105
Period size: 33 Copynumber: 1.9 Consensus size: 34
40263636 GTTTATTAAA
40263646 TTTAGTTCAGCTCAAATAAGTGTTAG-AATTATT
1 TTTAGTTCAGCTCAAATAAGTGTTAGTAATTATT
**
40263679 TTTAGTTCAGCTTTAATAAGTGTTAGTAATTA
1 TTTAGTTCAGCTCAAATAAGTGTTAGTAATTA
40263711 AATTGTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 24 0.83
34 5 0.17
ACGTcount: A:0.32, C:0.08, G:0.15, T:0.45
Consensus pattern (34 bp):
TTTAGTTCAGCTCAAATAAGTGTTAGTAATTATT
Found at i:40266137 original size:40 final size:40
Alignment explanation
Indices: 40266092--40266242 Score: 205
Period size: 40 Copynumber: 3.8 Consensus size: 40
40266082 ATAACCACAA
* * *
40266092 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
* *
40266132 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
* * * *
40266172 ACACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATATCAACTC
40266212 GCACAAATGCCTTCGGGTCTTAACCCGGATA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATA
40266243 AAATTCAAAT
Statistics
Matches: 101, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 96 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
Found at i:40266351 original size:100 final size:100
Alignment explanation
Indices: 40266215--40266418 Score: 372
Period size: 100 Copynumber: 2.0 Consensus size: 100
40266205 ATCACTAGCA
*
40266215 CAAATGCCTTCGGGTCTTAACCCGGATAAAATTCAAATGCTCATGCACACATATATCAACAATCA
1 CAAATGCCTTCGGGACTTAACCCGGATAAAATTCAAATGCTCATGCACACATATATCAACAATCA
40266280 TGACACATCCATATTTCATTTTCGTTACTAAGGCT
66 TGACACATCCATATTTCATTTTCGTTACTAAGGCT
* **
40266315 CAAATGCCTTCGGGACTTAGCCCGGATATCATTCAAATGCTCATGCACACATATATCAACAATCA
1 CAAATGCCTTCGGGACTTAACCCGGATAAAATTCAAATGCTCATGCACACATATATCAACAATCA
40266380 TGACACATCCATATTTCATTTTCGTTACTAAGGCT
66 TGACACATCCATATTTCATTTTCGTTACTAAGGCT
40266415 CAAA
1 CAAA
40266419 CACAGAACAT
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 100 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (100 bp):
CAAATGCCTTCGGGACTTAACCCGGATAAAATTCAAATGCTCATGCACACATATATCAACAATCA
TGACACATCCATATTTCATTTTCGTTACTAAGGCT
Found at i:40274552 original size:27 final size:27
Alignment explanation
Indices: 40274522--40274698 Score: 169
Period size: 27 Copynumber: 6.5 Consensus size: 27
40274512 ATATTGAGCC
* *
40274522 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
40274549 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
40274576 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
40274604 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
40274631 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
40274658 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
40274685 CGCACACTTAGTGC
1 CGCACACTTAGTGC
40274699 CGCACAATTT
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:40274661 original size:82 final size:81
Alignment explanation
Indices: 40274543--40274702 Score: 232
Period size: 82 Copynumber: 2.0 Consensus size: 81
40274533 TGCTATATAA
* * *
40274543 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
40274608 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
40274625 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
40274689 CACTTAGTGCCGCA
65 CACTTAGTGCCGCA
40274703 CAATTTAATC
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
81 23 0.33
82 47 0.67
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:40285572 original size:27 final size:27
Alignment explanation
Indices: 40285541--40285620 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
40285531 AAGGGGGTGG
40285541 TCCATCGAGATAGTAAACATGTGGTAA
1 TCCATCGAGATAGTAAACATGTGGTAA
* *
40285568 TCCATC-ATGACAGTAAACATGTGGTAT
1 TCCATCGA-GATAGTAAACATGTGGTAA
* *
40285595 TCTATCG-GTATAGTAAACACGTGGTA
1 TCCATCGAG-ATAGTAAACATGTGGTA
40285621 GTTTGTCGAG
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.04
27 43 0.96
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (27 bp):
TCCATCGAGATAGTAAACATGTGGTAA
Found at i:40285660 original size:27 final size:27
Alignment explanation
Indices: 40285630--40285694 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
40285620 AGTTTGTCGA
* * *
40285630 GACATTAAACATAAGGTAGTCTACTGG
1 GACAATAAACATAAGGTAGTCCACCGG
* * **
40285657 GACAGTAAAAATGTGGTAGTCCACCGG
1 GACAATAAACATAAGGTAGTCCACCGG
40285684 GACAATAAACA
1 GACAATAAACA
40285695 CAAGAATGTC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.20
Consensus pattern (27 bp):
GACAATAAACATAAGGTAGTCCACCGG
Found at i:40295658 original size:27 final size:27
Alignment explanation
Indices: 40295627--40295706 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
40295617 AAGGGGGTGG
40295627 TCCATCGAGATAGTAAACATGTGGTAA
1 TCCATCGAGATAGTAAACATGTGGTAA
* *
40295654 TCCATC-ATGACAGTAAACATGTGGTAT
1 TCCATCGA-GATAGTAAACATGTGGTAA
* *
40295681 TCTATCG-GTATAGTAAACACGTGGTA
1 TCCATCGAG-ATAGTAAACATGTGGTA
40295707 GTTTGTCGAG
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.04
27 43 0.96
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (27 bp):
TCCATCGAGATAGTAAACATGTGGTAA
Found at i:40295746 original size:27 final size:27
Alignment explanation
Indices: 40295716--40295780 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
40295706 AGTTTGTCGA
* * *
40295716 GACATTAAACATAAGGTAGTCTACTGG
1 GACAATAAACATAAGGTAGTCCACCGG
* * **
40295743 GACAGTAAAAATGTGGTAGTCCACCGG
1 GACAATAAACATAAGGTAGTCCACCGG
40295770 GACAATAAACA
1 GACAATAAACA
40295781 CAAGAATGTC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.20
Consensus pattern (27 bp):
GACAATAAACATAAGGTAGTCCACCGG
Found at i:40302388 original size:6 final size:6
Alignment explanation
Indices: 40302374--40302416 Score: 68
Period size: 6 Copynumber: 7.2 Consensus size: 6
40302364 ATAAGGTCTC
* *
40302374 TTTAAT TTTATT TTTATT TTCATT TTTATT TTTATT TTTATT T
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT T
40302417 GGGGATTTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:40303187 original size:19 final size:20
Alignment explanation
Indices: 40303163--40303220 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
40303153 TACCGATCAT
40303163 ATGAAT-AAGCTA-TGTTGAA
1 ATGAATGAA-CTATTGTTGAA
*
40303182 ATGAATGAATTATTGTTGAA
1 ATGAATGAACTATTGTTGAA
* *
40303202 ATGAATGAATTACTGTTGA
1 ATGAATGAACTATTGTTGA
40303221 TACAGATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
19 8 0.23
20 27 0.77
ACGTcount: A:0.40, C:0.03, G:0.21, T:0.36
Consensus pattern (20 bp):
ATGAATGAACTATTGTTGAA
Found at i:40303200 original size:20 final size:20
Alignment explanation
Indices: 40303175--40303220 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
40303165 GAATAAGCTA
*
40303175 TGTTGAAATGAATGAATTAT
1 TGTTGAAATGAATGAATTAC
40303195 TGTTGAAATGAATGAATTAC
1 TGTTGAAATGAATGAATTAC
40303215 TGTTGA
1 TGTTGA
40303221 TACAGATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.37, C:0.02, G:0.22, T:0.39
Consensus pattern (20 bp):
TGTTGAAATGAATGAATTAC
Found at i:40303232 original size:20 final size:19
Alignment explanation
Indices: 40303209--40303282 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
40303199 GAAATGAATG
40303209 AATTACTGTTGATACAGATA
1 AATTACTGTT-ATACAGATA
* *
40303229 AATTACTGTTATTACTGATG
1 AATTACTGTTA-TACAGATA
*
40303249 AATTACTGGTTATACAGATG
1 AATTACT-GTTATACAGATA
*
40303269 AACTACTAGTTATA
1 AATTACT-GTTATA
40303283 TGAATGAAGT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
19 1 0.02
20 42 0.89
21 4 0.09
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (19 bp):
AATTACTGTTATACAGATA
Found at i:40303233 original size:40 final size:39
Alignment explanation
Indices: 40303201--40303290 Score: 94
Period size: 40 Copynumber: 2.2 Consensus size: 39
40303191 TTATTGTTGA
40303201 AATGAATGAATTACT-GTTGATACAGATAAATTACTGTTATT
1 AATG-ATGAATTACTGGTT-ATACAGATAAATTACTGTTA-T
* * *
40303242 ACTGATGAATTACTGGTTATACAGATGAACTACTAGTTAT
1 AATGATGAATTACTGGTTATACAGATAAATTACT-GTTAT
40303282 -ATGAATGAA
1 AATG-ATGAA
40303291 GTTATATGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
39 2 0.05
40 30 0.71
41 10 0.24
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.36
Consensus pattern (39 bp):
AATGATGAATTACTGGTTATACAGATAAATTACTGTTAT
Found at i:40306870 original size:37 final size:37
Alignment explanation
Indices: 40306820--40306898 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
40306810 TTATTACGAA
* *
40306820 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTCT-CACACGAAGTCATCGG
*
40306857 GTCTTACCCGGACAAAATTCTCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCTCACACGAAGTCATCGG
40306894 GTCTT
1 GTCTT
40306899 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 35 0.92
38 3 0.08
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCTCACACGAAGTCATCGG
Found at i:40307095 original size:47 final size:47
Alignment explanation
Indices: 40307017--40307208 Score: 267
Period size: 47 Copynumber: 4.1 Consensus size: 47
40307007 CCCTTCGGGA
* * * * * * *
40307017 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*** *
40307064 CCCGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
40307111 CTTATCACACATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
40307158 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
40307205 CTTA
1 CTTA
40307209 CTATCATTTC
Statistics
Matches: 126, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:40311274 original size:16 final size:16
Alignment explanation
Indices: 40311243--40311274 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
40311233 AAGTTTAGAT
*
40311243 TTTAAAAAATAAAAAA
1 TTTAAAAAAAAAAAAA
40311259 TTTAAAAAAAAAAAAA
1 TTTAAAAAAAAAAAAA
40311275 AGACTTGATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (16 bp):
TTTAAAAAAAAAAAAA
Found at i:40311275 original size:17 final size:17
Alignment explanation
Indices: 40311241--40311275 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
40311231 GAAAGTTTAG
* *
40311241 ATTTTAAAAAATAAAAA
1 ATTTAAAAAAAAAAAAA
40311258 ATTTAAAAAAAAAAAAA
1 ATTTAAAAAAAAAAAAA
40311275 A
1 A
40311276 GACTTGATCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (17 bp):
ATTTAAAAAAAAAAAAA
Found at i:40316342 original size:11 final size:11
Alignment explanation
Indices: 40316326--40316350 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
40316316 ATATCTAGAA
40316326 TTCTCTTCATT
1 TTCTCTTCATT
40316337 TTCTCTTCATT
1 TTCTCTTCATT
40316348 TTC
1 TTC
40316351 ATTAACTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (11 bp):
TTCTCTTCATT
Found at i:40318109 original size:49 final size:49
Alignment explanation
Indices: 40318055--40318155 Score: 193
Period size: 49 Copynumber: 2.1 Consensus size: 49
40318045 TACATAGATG
40318055 TGATTGTTATAAGTTATATGAATAAATGATGTGTAAAAGTATATGCATA
1 TGATTGTTATAAGTTATATGAATAAATGATGTGTAAAAGTATATGCATA
*
40318104 TGATTGTTATAAGTTATGTGAATAAATGATGTGTAAAAGTATATGCATA
1 TGATTGTTATAAGTTATATGAATAAATGATGTGTAAAAGTATATGCATA
40318153 TGA
1 TGA
40318156 GAAATTTAAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.40, C:0.02, G:0.20, T:0.39
Consensus pattern (49 bp):
TGATTGTTATAAGTTATATGAATAAATGATGTGTAAAAGTATATGCATA
Found at i:40318359 original size:10 final size:10
Alignment explanation
Indices: 40318344--40318371 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
40318334 ATATTACATG
40318344 TTTACTTTGT
1 TTTACTTTGT
40318354 TTTACTTTGT
1 TTTACTTTGT
40318364 TTTACTTT
1 TTTACTTT
40318372 TTCTCCTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.11, C:0.11, G:0.07, T:0.71
Consensus pattern (10 bp):
TTTACTTTGT
Found at i:40319129 original size:44 final size:44
Alignment explanation
Indices: 40319028--40319119 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
40319018 TGTTCAAGAA
*
40319028 TACTTCGACCTT-GAGTCGATGAGGCACTATAAGTGTCGTACTGT
1 TACTTCGA-CTTCGAGTCGATGAGGCACTATAAGTGTCGTACTGC
**
40319072 TACTTCGACTTCGAGTCGATGAGGCACCT-TGTGTGTCGTACTGC
1 TACTTCGACTTCGAGTCGATGAGGCA-CTATAAGTGTCGTACTGC
40319116 TACT
1 TACT
40319120 GTTACTTCGA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
43 3 0.07
44 38 0.88
45 2 0.05
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.33
Consensus pattern (44 bp):
TACTTCGACTTCGAGTCGATGAGGCACTATAAGTGTCGTACTGC
Found at i:40319439 original size:21 final size:22
Alignment explanation
Indices: 40319398--40319492 Score: 108
Period size: 21 Copynumber: 4.5 Consensus size: 22
40319388 AGGCACTTTA
*
40319398 TGTGTCGTATTTCAGGAACCTCG
1 TGTGTCGTA-TTCAGGCACCTCG
40319421 TGTGTCGTATT-AGGCACCTCG
1 TGTGTCGTATTCAGGCACCTCG
40319442 TGTGTCGT-TTCAGGCACCTCG
1 TGTGTCGTATTCAGGCACCTCG
* * **
40319463 TGTGTTGT-TTCAAGCA-CTTA
1 TGTGTCGTATTCAGGCACCTCG
40319483 TGTGTCGTAT
1 TGTGTCGTAT
40319493 ACTGATTAGG
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
20 11 0.17
21 42 0.66
22 2 0.03
23 9 0.14
ACGTcount: A:0.15, C:0.21, G:0.26, T:0.38
Consensus pattern (22 bp):
TGTGTCGTATTCAGGCACCTCG
Found at i:40320387 original size:22 final size:22
Alignment explanation
Indices: 40320361--40320430 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
40320351 TCTTTGATTG
*
40320361 TTAGCACATTAGTGCTCTCCGT
1 TTAGCACATTAGTGCTCTCTGT
*
40320383 TTAGCACATCT-GTGCTATCTGT
1 TTAGCACAT-TAGTGCTCTCTGT
* * *
40320405 ATAACACTTTAGTGCTCTCTGT
1 TTAGCACATTAGTGCTCTCTGT
40320427 TTAG
1 TTAG
40320431 TAGTGCATAA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
21 1 0.03
22 36 0.95
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (22 bp):
TTAGCACATTAGTGCTCTCTGT
Found at i:40322361 original size:11 final size:11
Alignment explanation
Indices: 40322345--40322369 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
40322335 ATATCTAGAA
40322345 TTCTCTTCATT
1 TTCTCTTCATT
40322356 TTCTCTTCATT
1 TTCTCTTCATT
40322367 TTC
1 TTC
40322370 ATTAACAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (11 bp):
TTCTCTTCATT
Found at i:40323652 original size:25 final size:25
Alignment explanation
Indices: 40323623--40323674 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
40323613 AAGAATAATT
**
40323623 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCCGATATTGCCTAATAAA
* *
40323648 TGAATATCCGATATTGCTTAGTAAA
1 TGAATATCCGATATTGCCTAATAAA
40323673 TG
1 TG
40323675 TTAAGCCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (25 bp):
TGAATATCCGATATTGCCTAATAAA
Found at i:40326180 original size:24 final size:24
Alignment explanation
Indices: 40326153--40326199 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
40326143 ATTGAAATGG
40326153 ATTG-ATTTATTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
40326177 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
40326200 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:40326404 original size:41 final size:39
Alignment explanation
Indices: 40326359--40326494 Score: 152
Period size: 40 Copynumber: 3.5 Consensus size: 39
40326349 CGACTTCGAG
*
40326359 TCGATGAGGCACTGGGTGTCAATTTACTACTTCGGATTAAT
1 TCGATGAGGCACTGGGTGTCAA-TTACTACTTCGAATT-AT
* *
40326400 TCGATGAGGCACTGGGTGCCAATT--TACTTC-AATTTAG
1 TCGATGAGGCACTGGGTGTCAATTACTACTTCGAA-TTAT
* **
40326437 TCGATGAGACACAAGGTGTCAAATTACTACTTCGAATTAT
1 TCGATGAGGCACTGGGTGTC-AATTACTACTTCGAATTAT
*
40326477 CCGATGAGGCACTGGGTG
1 TCGATGAGGCACTGGGTG
40326495 CCAAACTGGT
Statistics
Matches: 78, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
37 18 0.23
38 12 0.15
40 25 0.32
41 23 0.29
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (39 bp):
TCGATGAGGCACTGGGTGTCAATTACTACTTCGAATTAT
Found at i:40332417 original size:48 final size:48
Alignment explanation
Indices: 40332361--40332459 Score: 189
Period size: 48 Copynumber: 2.1 Consensus size: 48
40332351 TCTAGTCGTT
40332361 ATTCTCACACAAATTGATAACAACCTATGAATTCTATAAAATGTCAGA
1 ATTCTCACACAAATTGATAACAACCTATGAATTCTATAAAATGTCAGA
*
40332409 ATTCTCACACAAATTGGTAACAACCTATGAATTCTATAAAATGTCAGA
1 ATTCTCACACAAATTGATAACAACCTATGAATTCTATAAAATGTCAGA
40332457 ATT
1 ATT
40332460 TTCCATAATT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.30
Consensus pattern (48 bp):
ATTCTCACACAAATTGATAACAACCTATGAATTCTATAAAATGTCAGA
Done.