Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 145 of 205
Found at i:43861149 original size:116 final size:116
Alignment explanation
Indices: 43860841--43861162 Score: 307
Period size: 116 Copynumber: 2.7 Consensus size: 116
43860831 GTTTAAGAAC
* * * * *
43860841 TTATTTAGTATATAAATTAAAAAAATACTAATTAATCTAAACCTTAAACCCTAACCCGACCCCGA
1 TTATTTAATATATAAATTGAAAAAACACTAATTAATCTAAATCATAAACCCTAACCCGA--CC--
* * * * * * *
43860906 ATTTCTAAACCCTAAATCACT-AACTCTTAACTCCAAACCCCTAA-CCACTAACCCCTAAACC
62 A----TAAATCCTAAATCCCTAAAC-CCTAACT-C-GACCCCGAATGC-CTAACCCCTAAACA
*
43860967 TTATTTAATATATAAATTGAAAAAACACTAATTAATCTAAATCATAAACCCTAACCCGACCCTAA
1 TTATTTAATATATAAATTGAAAAAACACTAATTAATCTAAATCATAAACCCTAACCCGACCATAA
43861032 ATCCCT-AATCCCTAAACCCTAACTCGACCCCGAATGCCTAACCCCTAAACA
66 AT-CCTAAATCCCTAAACCCTAACTCGACCCCGAATGCCTAACCCCTAAACA
* *
43861083 TTATTTAATATATAAATT-AAAACACACTAATTAATCTAAATCAT-AA-CTTGATA-CCGAATCC
1 TTATTTAATATATAAATTGAAAAAACACTAATTAATCTAAATCATAAACCCT-A-ACCCG-A-CC
43861144 ATAAATCCTAAATCCCTAA
62 ATAAATCCTAAATCCCTAA
43861163 CTGATCTTAA
Statistics
Matches: 172, Mismatches: 16, Indels: 26
0.80 0.07 0.12
Matches are distributed among these distances:
113 2 0.01
114 6 0.03
115 30 0.17
116 54 0.31
117 2 0.01
118 16 0.09
119 6 0.03
124 2 0.01
126 54 0.31
ACGTcount: A:0.43, C:0.27, G:0.03, T:0.27
Consensus pattern (116 bp):
TTATTTAATATATAAATTGAAAAAACACTAATTAATCTAAATCATAAACCCTAACCCGACCATAA
ATCCTAAATCCCTAAACCCTAACTCGACCCCGAATGCCTAACCCCTAAACA
Found at i:43861946 original size:18 final size:17
Alignment explanation
Indices: 43861923--43861970 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 17
43861913 GATTAACTAA
43861923 ATATAAAATTATTTTTGG
1 ATATAAAATTATTTTT-G
43861941 ATATAAAATTATTTTTG
1 ATATAAAATTATTTTTG
*
43861958 TTAATAAAATTAT
1 AT-ATAAAATTAT
43861971 CAATATATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
17 2 0.07
18 26 0.93
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (17 bp):
ATATAAAATTATTTTTG
Found at i:43862473 original size:41 final size:41
Alignment explanation
Indices: 43862401--43862642 Score: 340
Period size: 41 Copynumber: 5.9 Consensus size: 41
43862391 AGATTTTATT
* *
43862401 ATTAGCGGCGCTTTTTCAAAAACGTCGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCAAGC
* * * * *
43862442 ATTACCGACGCTTTTTCAAAAACGCCACTAAAGGTCCTAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCAAGC
* * *
43862483 ATTAGCGGTGCCTTTTCAAAAACGCCGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCAAGC
* *
43862524 ATTGGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCTCAAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCAAGC
* *
43862565 ATTAGCGTCGCTTTTTCAAAAACGTCGCTAAAGGCCCAAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCAAGC
* *
43862606 ATTAGCGGCGCTTTTTTAAAAACGCCGCTAAATGCCC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCC
43862643 CCAAAACTCA
Statistics
Matches: 175, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 175 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCAAGC
Found at i:43862771 original size:40 final size:38
Alignment explanation
Indices: 43862690--43862771 Score: 103
Period size: 39 Copynumber: 2.1 Consensus size: 38
43862680 TTTGCGACGC
*
43862690 TTTTCAAAAAACACCGCTAATGCTTATTTTTAGCTGTG
1 TTTTCAAAAAACACCGCTAATGCTTATTTTTAGCTGCG
* *
43862728 TTTTCCAAAAAGCGCCGCTAATGCTTAATTTTTAG-TGGCG
1 TTTT-CAAAAAACACCGCTAATGCTT-ATTTTTAGCT-GCG
43862768 TTTT
1 TTTT
43862772 TTGTCCAAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
38 4 0.11
39 20 0.53
40 14 0.37
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (38 bp):
TTTTCAAAAAACACCGCTAATGCTTATTTTTAGCTGCG
Found at i:43869843 original size:12 final size:12
Alignment explanation
Indices: 43869828--43869855 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
43869818 GTCTTGAATC
43869828 AAGTCATTCATT
1 AAGTCATTCATT
43869840 AAGTCATTCATT
1 AAGTCATTCATT
43869852 AAGT
1 AAGT
43869856 GTTTTCTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (12 bp):
AAGTCATTCATT
Found at i:43869995 original size:12 final size:12
Alignment explanation
Indices: 43869862--43869995 Score: 83
Period size: 12 Copynumber: 10.7 Consensus size: 12
43869852 AAGTGTTTTC
43869862 TTTCATCAAATGTT
1 TTTCATC-AA-GTT
43869876 TTTCATCAAGTT
1 TTTCATCAAGTT
*
43869888 CTTTTATCAAGTT
1 -TTTCATCAAGTT
* *
43869901 TTTAATTACCAATTT
1 TTTCA-T--CAAGTT
* *
43869916 TTTTATTAAGTT
1 TTTCATCAAGTT
*
43869928 TTGCATCAAGTT
1 TTTCATCAAGTT
* *
43869940 CTTT--TTAAGAT
1 -TTTCATCAAGTT
*
43869951 TTTCGTCAAGTCT
1 TTTCATCAAGT-T
43869964 TTTCATCAAGTT
1 TTTCATCAAGTT
*
43869976 TTCCATCAAGTT
1 TTTCATCAAGTT
*
43869988 TTTAATCA
1 TTTCATCA
43869996 TTAAGTTTTT
Statistics
Matches: 94, Mismatches: 18, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
10 3 0.03
11 5 0.05
12 42 0.45
13 27 0.29
14 8 0.09
15 9 0.10
ACGTcount: A:0.26, C:0.15, G:0.08, T:0.51
Consensus pattern (12 bp):
TTTCATCAAGTT
Found at i:43870818 original size:22 final size:20
Alignment explanation
Indices: 43870767--43870820 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 20
43870757 AAAGCTGAGC
*
43870767 TTATTTTAATTAATTTTTCT
1 TTATTTTATTTAATTTTTCT
*
43870787 TTATATTTATTTAAATTTTTTT
1 TTAT-TTTATTT-AATTTTTCT
43870809 ATTATTTTATTT
1 -TTATTTTATTT
43870821 TTAGCTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 4 0.14
21 6 0.21
22 15 0.52
23 4 0.14
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (20 bp):
TTATTTTATTTAATTTTTCT
Found at i:43878924 original size:62 final size:62
Alignment explanation
Indices: 43878826--43878960 Score: 153
Period size: 62 Copynumber: 2.2 Consensus size: 62
43878816 TATCTAAACT
* * * * * ** ** *
43878826 TGACACTTTTTTTTTTAATTTGGTACTTGAAGTTTTTTTTTTTTGAATTTGATACTTGAACA
1 TGACACTTTTTTTCTTAATTTGGCACCTAAACTTTTTTTTGGTCAAAATTGATACTTGAACA
* * *
43878888 TGACACTTTTTTTCTTGATTTGGCACCTAAACTTTTTTTTGGTCAAAATTGGTACTTGAACT
1 TGACACTTTTTTTCTTAATTTGGCACCTAAACTTTTTTTTGGTCAAAATTGATACTTGAACA
43878950 TGACACTTTTT
1 TGACACTTTTT
43878961 CCTAATTTTG
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.22, C:0.13, G:0.13, T:0.52
Consensus pattern (62 bp):
TGACACTTTTTTTCTTAATTTGGCACCTAAACTTTTTTTTGGTCAAAATTGATACTTGAACA
Found at i:43892192 original size:27 final size:27
Alignment explanation
Indices: 43892153--43892330 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
43892143 ATATTGAGCC
* *
43892153 CGCACACTCAGTGCTACATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * * *
43892180 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
*
43892207 CGCACACTTAGTGCTACATAGTCAGACC
1 CGCACACTTAGTGCTACATAGTCA-ACT
** * *
43892235 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
43892262 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
43892289 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAGTC-AACT
43892316 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
43892331 GTACAATTTA
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:43892292 original size:82 final size:81
Alignment explanation
Indices: 43892151--43892329 Score: 216
Period size: 82 Copynumber: 2.2 Consensus size: 81
43892141 GTATATTGAG
* * *
43892151 CCCGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTT
1 CCCGCACACTTAGTGCCACATAATCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTT
*
43892216 AGTGCTACATAGTCAGA
66 AGTGCAACATAGTC-GA
* ** * * **
43892233 CCCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACT
1 CCCGCACACTTAGTGCCACATAATCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACT
43892297 TAGTGCAACATAGTCGA
65 TAGTGCAACATAGTCGA
**
43892314 ATCGCACACTTAGTGC
1 CCCGCACACTTAGTGC
43892330 TGTACAATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (81 bp):
CCCGCACACTTAGTGCCACATAATCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTT
AGTGCAACATAGTCGA
Found at i:43894725 original size:27 final size:27
Alignment explanation
Indices: 43894695--43894872 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
43894685 ATATTGAGTC
* *
43894695 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
43894722 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
43894749 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
43894777 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
43894804 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
43894831 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
43894858 CGCACACTTACTGCT
1 CGCACACTTAGTGCT
43894873 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:43894834 original size:82 final size:81
Alignment explanation
Indices: 43894716--43894867 Score: 225
Period size: 82 Copynumber: 1.9 Consensus size: 81
43894706 TGCTATATAA
* *
43894716 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
43894781 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
43894798 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
43894862 CACTTA
65 CACTTA
43894868 CTGCTGTACA
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 12 0.19
82 51 0.81
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:43894855 original size:54 final size:54
Alignment explanation
Indices: 43894695--43894867 Score: 197
Period size: 54 Copynumber: 3.2 Consensus size: 54
43894685 ATATTGAGTC
* * * *
43894695 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
43894749 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
43894804 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
43894858 CGCACACTTA
1 CGCACACTTA
43894868 CTGCTGTACA
Statistics
Matches: 100, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
52 1 0.01
54 53 0.53
55 45 0.45
56 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:43903592 original size:47 final size:47
Alignment explanation
Indices: 43903532--43904067 Score: 729
Period size: 47 Copynumber: 11.3 Consensus size: 47
43903522 TGAAAGTGTA
43903532 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
43903579 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
*
43903626 TATATATGTGATAAGGCCGAATTGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* *
43903673 TATATATATATGTGATAAGGCCGAATGACCAATGTGATGGATGTGAACATG
1 ----TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
43903724 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * *
43903771 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGGGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * * * *
43903818 TGTATGTGTGATAAGGCCGAATGACCAATGTGATGGATGTGAACGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * * * *
43903865 TGTATGTGTGATAAGGCCGAATGACCAATGTGATGGATGTGAACGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
43903912 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
43903959 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* *
43904006 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATG
*
43904053 TATAAATGTGATAAG
1 TATATATGTGATAAG
43904068 TCCTGAAGGG
Statistics
Matches: 444, Mismatches: 37, Indels: 16
0.89 0.07 0.03
Matches are distributed among these distances:
46 2 0.00
47 396 0.89
48 3 0.01
51 42 0.09
52 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:43903945 original size:22 final size:22
Alignment explanation
Indices: 43903918--43904039 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
43903908 CGTGTGTATG
43903918 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
43903940 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
43903965 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
43903987 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
43904012 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
43904034 TGTGAT
1 TGTGAT
43904040 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:43906170 original size:25 final size:25
Alignment explanation
Indices: 43906141--43906188 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
43906131 TTATAATATG
* * *
43906141 AAAATAACCGTTTTGCCCCTAGGTA
1 AAAATAACCATTATACCCCTAGGTA
*
43906166 AAAATGACCATTATACCCCTAGG
1 AAAATAACCATTATACCCCTAGG
43906189 GTTTAAATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATAACCATTATACCCCTAGGTA
Found at i:43906272 original size:11 final size:11
Alignment explanation
Indices: 43906236--43906291 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
43906226 CATGGTATGT
43906236 ATGATATGCAC
1 ATGATATGCAC
* *
43906247 ATGACATG--T
1 ATGATATGCAC
43906256 ATGATATGCAC
1 ATGATATGCAC
*
43906267 ATGATATG--T
1 ATGATATGCAC
43906276 ATGATATGCAC
1 ATGATATGCAC
43906287 ATGAT
1 ATGAT
43906292 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:43906291 original size:20 final size:20
Alignment explanation
Indices: 43906225--43906291 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
43906215 ATTTTGATAA
*
43906225 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
43906245 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
43906265 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
43906285 ACATGAT
1 ACATGAT
43906292 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:43906410 original size:47 final size:47
Alignment explanation
Indices: 43906341--43906460 Score: 224
Period size: 47 Copynumber: 2.6 Consensus size: 47
43906331 GAGGAAGTGC
43906341 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
43906388 AAAAGGGCTTATGCCTCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
43906435 AAAAGGGCTT-TGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
43906461 AGAGGCTAGG
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
46 15 0.21
47 56 0.79
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:43906455 original size:70 final size:71
Alignment explanation
Indices: 43906342--43906481 Score: 232
Period size: 70 Copynumber: 2.0 Consensus size: 71
43906332 AGGAAGTGCA
*
43906342 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCCT-C
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCC
43906405 AGTTATT
65 AGTTATT
43906412 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTT-TGCCCCAGTTATTAAAAGAGGCTAGGCCTCC
1 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCC
43906476 AGTTAT
65 AGTTAT
43906482 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
70 47 0.71
71 19 0.29
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (71 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCA
GTTATT
Found at i:43906461 original size:23 final size:24
Alignment explanation
Indices: 43906341--43906481 Score: 218
Period size: 23 Copynumber: 6.0 Consensus size: 24
43906331 GAGGAAGTGC
43906341 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
43906365 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
43906388 AAAAGGGCTTATGCCTCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
43906412 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
43906435 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
43906458 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
43906482 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 3, Indels: 9
0.90 0.02 0.07
Matches are distributed among these distances:
23 64 0.59
24 37 0.34
25 8 0.07
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:43906710 original size:31 final size:31
Alignment explanation
Indices: 43906675--43906737 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
43906665 CATTTACAGT
**
43906675 AAAGGCTTTGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
**
43906706 AAAGGCTTCAGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
43906737 A
1 A
43906738 TTATGAAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:43910120 original size:16 final size:16
Alignment explanation
Indices: 43910090--43910119 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
43910080 GAAATTTAAT
43910090 TTAATTTAACTTTTTA
1 TTAATTTAACTTTTTA
43910106 TTAATTT-ACTTTTT
1 TTAATTTAACTTTTT
43910120 TTCTTTCTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (16 bp):
TTAATTTAACTTTTTA
Found at i:43915957 original size:16 final size:16
Alignment explanation
Indices: 43915936--43915970 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
43915926 ATTATCTATC
*
43915936 TTATTTTATTTTATTT
1 TTATTTTATTTAATTT
43915952 TTATTTTATTTAATTT
1 TTATTTTATTTAATTT
43915968 TTA
1 TTA
43915971 ACGATTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
TTATTTTATTTAATTT
Found at i:43936024 original size:41 final size:42
Alignment explanation
Indices: 43935960--43936041 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
43935950 GTGGCCACTT
*
43935960 TGAATCCCTTCCGGCTCCAAG-CCCCACATCAAGGCTCACCC
1 TGAATCCCTTCCGACTCCAAGCCCCCACATCAAGGCTCACCC
*
43936001 TGAATCCCCTT-CGACTCCCAGCCCCCACATCAAGGCTCACC
1 TGAAT-CCCTTCCGACTCCAAGCCCCCACATCAAGGCTCACC
43936042 TGCAAGGTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
41 13 0.35
42 24 0.65
ACGTcount: A:0.22, C:0.48, G:0.13, T:0.17
Consensus pattern (42 bp):
TGAATCCCTTCCGACTCCAAGCCCCCACATCAAGGCTCACCC
Found at i:43936194 original size:31 final size:31
Alignment explanation
Indices: 43936159--43936235 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
43936149 GCATATACTA
*
43936159 GGCCGAAGCCTTTACATTATCCATGTCATTG
1 GGCCGAAGCCTTTACATTATCCATATCATTG
* *
43936190 GGCCGAAGCCTTTTCATTATTCATATCATTG
1 GGCCGAAGCCTTTACATTATCCATATCATTG
*
43936221 GGCCAAAGCCTTTAC
1 GGCCGAAGCCTTTAC
43936236 TGAAAACGGT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.32
Consensus pattern (31 bp):
GGCCGAAGCCTTTACATTATCCATATCATTG
Found at i:43936475 original size:24 final size:24
Alignment explanation
Indices: 43936448--43936524 Score: 91
Period size: 25 Copynumber: 3.1 Consensus size: 24
43936438 GCCTAGCCTC
43936448 TTTTAATAACTGGGGCAAAGCCCT
1 TTTTAATAACTGGGGCAAAGCCCT
*
43936472 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAAT-AACTGGGGCAAAGCCCT
* * * *
43936497 TTTCAGTAAGCTGGGACATAGCCCT
1 TTTTAATAA-CTGGGGCAAAGCCCT
43936522 TTT
1 TTT
43936525 GCACTTCCTC
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
24 8 0.18
25 37 0.82
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (24 bp):
TTTTAATAACTGGGGCAAAGCCCT
Found at i:43936602 original size:11 final size:11
Alignment explanation
Indices: 43936571--43936618 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
43936561 AAATGAATAC
43936571 ATCATGTGCAT
1 ATCATGTGCAT
*
43936582 ATCA--TACAT
1 ATCATGTGCAT
43936591 ATCATGTGCAT
1 ATCATGTGCAT
*
43936602 ATCATGT-CAA
1 ATCATGTGCAT
43936612 ATCATGT
1 ATCATGT
43936619 ATATCAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 9 0.28
11 15 0.47
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:43938069 original size:73 final size:73
Alignment explanation
Indices: 43937945--43938092 Score: 226
Period size: 73 Copynumber: 2.0 Consensus size: 73
43937935 TGATTCAAAC
* * *
43937945 TCTTTCCCATAGAGTTCCATTTGGCTACAACTCCTGCATGCTCAAAACATAAAAATTAGCATC-C
1 TCTTTCCCACAGAGTTCCATTCGGCTACAACTCCTGCATGCTCAAAACATAAAAATTAACATCAC
43938009 CATTTGCCA
66 C-TTTGCCA
* * *
43938018 TCTTTCCCACAGAGTTCCATTCGGCTACAACTCCTGCCTGCTCAAAGCATAAAATTTAACATCAC
1 TCTTTCCCACAGAGTTCCATTCGGCTACAACTCCTGCATGCTCAAAACATAAAAATTAACATCAC
43938083 CTTTGCCA
66 CTTTGCCA
43938091 TC
1 TC
43938093 ACAGGGAATC
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
73 66 0.97
74 2 0.03
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.30
Consensus pattern (73 bp):
TCTTTCCCACAGAGTTCCATTCGGCTACAACTCCTGCATGCTCAAAACATAAAAATTAACATCAC
CTTTGCCA
Found at i:43944426 original size:25 final size:25
Alignment explanation
Indices: 43944398--43944492 Score: 122
Period size: 25 Copynumber: 3.8 Consensus size: 25
43944388 CTCTTTTAAT
43944398 AACTGGGGCAAAACCCTTTTTGATA
1 AACTGGGGCAAAACCCTTTTTGATA
43944423 AACTGGGG-AAAAGCCCTTTTTGATA
1 AACTGGGGCAAAA-CCCTTTTTGATA
* *
43944448 AACTGGGGCAAAGCCCTTTTCAGA-A
1 AACTGGGGCAAAACCCTTTT-TGATA
* *
43944473 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAACCCTTTT
43944493 GCACTTCCTC
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.06
25 55 0.86
26 5 0.08
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAACCCTTTTTGATA
Found at i:43944427 original size:50 final size:49
Alignment explanation
Indices: 43944373--43944492 Score: 136
Period size: 50 Copynumber: 2.4 Consensus size: 49
43944363 TTTATCATAT
* *
43944373 AACTGGAGGCCTAGCCTCTTTTAAT-AACTGGGGCAAAACCCTTTT-TGATA
1 AACTGG-GGCATAGCC-CTTTTAATAAACTGGGGCAAAACCCTTTTCAGA-A
* * * *
43944423 AACTGGGGAAAAGCCCTTTTTGATAAACTGGGGCAAAGCCCTTTTCAGAA
1 AACTGGGGCATAGCCC-TTTTAATAAACTGGGGCAAAACCCTTTTCAGAA
43944473 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCATAGCCCTTTT
43944493 GCACTTCCTC
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
48 1 0.02
49 16 0.27
50 40 0.68
51 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (49 bp):
AACTGGGGCATAGCCCTTTTAATAAACTGGGGCAAAACCCTTTTCAGAA
Found at i:43944558 original size:18 final size:19
Alignment explanation
Indices: 43944535--43944571 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
43944525 GCATGATTGA
43944535 ATAC-ATCATGTGCATATT
1 ATACAATCATGTGCATATT
43944553 ATACATATCATGTGCATAT
1 ATACA-ATCATGTGCATAT
43944572 CATGCCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
20 13 0.76
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
ATACAATCATGTGCATATT
Found at i:43944669 original size:25 final size:25
Alignment explanation
Indices: 43944623--43944670 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
43944613 ATAATTAAAC
* ** *
43944623 CCTAGGGGTAAAATGGTTATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
43944648 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
43944671 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:43946372 original size:50 final size:50
Alignment explanation
Indices: 43946313--43946410 Score: 178
Period size: 50 Copynumber: 2.0 Consensus size: 50
43946303 AAATACCAAT
* *
43946313 TTTTAAAAACTTTACCAAAATCTCGAAAATCACGAAAAACCCGAAAATCA
1 TTTTAAAAACTTTACCAAAATCTCAAAAATCACGAAAAACCCAAAAATCA
43946363 TTTTAAAAACTTTACCAAAATCTCAAAAATCACGAAAAACCCAAAAAT
1 TTTTAAAAACTTTACCAAAATCTCAAAAATCACGAAAAACCCAAAAAT
43946411 TATGATGTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.52, C:0.21, G:0.04, T:0.22
Consensus pattern (50 bp):
TTTTAAAAACTTTACCAAAATCTCAAAAATCACGAAAAACCCAAAAATCA
Found at i:43947497 original size:27 final size:27
Alignment explanation
Indices: 43947441--43947598 Score: 176
Period size: 27 Copynumber: 5.9 Consensus size: 27
43947431 AATTTGTAAA
* *
43947441 ATTACCAAAATACCCCTGTA-GGTAGG
1 ATTACCGAAATACCCCTATAGGGTAGG
** *
43947467 ATTATTGAAATACCCCTATGGGGTAGG
1 ATTACCGAAATACCCCTATAGGGTAGG
* * *
43947494 ATTACTGAAATACCCCTGTAGGATAGG
1 ATTACCGAAATACCCCTATAGGGTAGG
43947521 ATTACCGAAATACCCCTATAGGGTAGG
1 ATTACCGAAATACCCCTATAGGGTAGG
* * *
43947548 ATTATCGAAATACCCCTGTAGGTTAGG
1 ATTACCGAAATACCCCTATAGGGTAGG
* * *
43947575 ACTACCAAAATA-CCCTTTAGGGTA
1 ATTACCGAAATACCCCTATAGGGTA
43947599 AAATGACTGT
Statistics
Matches: 111, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 25 0.23
27 86 0.77
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (27 bp):
ATTACCGAAATACCCCTATAGGGTAGG
Found at i:43947538 original size:54 final size:53
Alignment explanation
Indices: 43947448--43947598 Score: 207
Period size: 54 Copynumber: 2.8 Consensus size: 53
43947438 AAAATTACCA
** *
43947448 AAATACCCCTGTAGGTAGGATTATTGAAATACCCCTATGGGGTAGGATTA-CTG
1 AAATACCCCTGTAGGTAGGATTACCGAAATACCCCTATAGGGTAGGATTATC-G
43947501 AAATACCCCTGTAGGATAGGATTACCGAAATACCCCTATAGGGTAGGATTATCG
1 AAATACCCCTGTAGG-TAGGATTACCGAAATACCCCTATAGGGTAGGATTATCG
* * *
43947555 AAATACCCCTGTAGGTTAGGACTACCAAAATA-CCCTTTAGGGTA
1 AAATACCCCTGTAGG-TAGGATTACCGAAATACCCCTATAGGGTA
43947599 AAATGACTGT
Statistics
Matches: 89, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
53 26 0.29
54 62 0.70
55 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (53 bp):
AAATACCCCTGTAGGTAGGATTACCGAAATACCCCTATAGGGTAGGATTATCG
Found at i:43947586 original size:81 final size:80
Alignment explanation
Indices: 43947441--43947589 Score: 208
Period size: 81 Copynumber: 1.9 Consensus size: 80
43947431 AATTTGTAAA
* * * * **
43947441 ATTACCAAAATACCCCTGTAGGTAGGATTATTGAAATACCCCTATGGGGTAGGATTACTGAAATA
1 ATTACCAAAATACCCCTATAGGTAGGATTATCGAAATACCCCTATAGGGTAGGACTACCAAAATA
43947506 CCCCTGTAGGATAGG
66 CCCCTGTAGGATAGG
* * *
43947521 ATTACCGAAATACCCCTATAGGGTAGGATTATCGAAATACCCCTGTAGGTTAGGACTACCAAAAT
1 ATTACCAAAATACCCCTATA-GGTAGGATTATCGAAATACCCCTATAGGGTAGGACTACCAAAAT
43947586 ACCC
65 ACCC
43947590 TTTAGGGTAA
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 18 0.31
81 41 0.69
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (80 bp):
ATTACCAAAATACCCCTATAGGTAGGATTATCGAAATACCCCTATAGGGTAGGACTACCAAAATA
CCCCTGTAGGATAGG
Found at i:43953916 original size:24 final size:24
Alignment explanation
Indices: 43953884--43953968 Score: 93
Period size: 24 Copynumber: 3.5 Consensus size: 24
43953874 ACTTATTCGT
43953884 ACACATAGTGCCACGTTTTCTCGC
1 ACACATAGTGCCACGTTTTCTCGC
* ** *
43953908 ACACATAGTGCCATGTAATCTCGG
1 ACACATAGTGCCACGTTTTCTCGC
43953932 ACACATAGTGCCACTTAGTTTT-T-GC
1 ACACATAGTGCCAC---GTTTTCTCGC
43953957 ACACATAGTGCC
1 ACACATAGTGCC
43953969 GCATAACCTT
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
24 33 0.66
25 13 0.26
26 1 0.02
27 3 0.06
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (24 bp):
ACACATAGTGCCACGTTTTCTCGC
Found at i:43953985 original size:49 final size:48
Alignment explanation
Indices: 43953884--43953991 Score: 121
Period size: 49 Copynumber: 2.2 Consensus size: 48
43953874 ACTTATTCGT
** * *
43953884 ACACATAGTGCCACGTTTTCTCGCACACATAGTGCCATGTAATCTCGG
1 ACACATAGTGCCACGTTTTCTCGCACACATAGTGCCACATAACCTCGC
* *
43953932 ACACATAGTGCCACTTAGTTTT-T-GCACACATAGTGCCGCATAACCTTGC
1 ACACATAGTGCCAC---GTTTTCTCGCACACATAGTGCCACATAACCTCGC
43953981 ACACATAGTGC
1 ACACATAGTGC
43953992 TGAAATTTCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
48 14 0.27
49 31 0.61
50 1 0.02
51 5 0.10
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.27
Consensus pattern (48 bp):
ACACATAGTGCCACGTTTTCTCGCACACATAGTGCCACATAACCTCGC
Found at i:43956283 original size:44 final size:42
Alignment explanation
Indices: 43956141--43956297 Score: 178
Period size: 43 Copynumber: 3.7 Consensus size: 42
43956131 AGCTCATACA
*
43956141 ATGCTAACGTCCCAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAATC-AA-ATCG
* *
43956184 ATGCC-ACTGTCCCAGATAG-GGTTTTACATG-AAATCAAATACG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACATGTAAATCAAAT-CG
* *
43956226 ATGCCATCGTCCCAGACGCGGTCTTACATGTAAATCATAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAATCA-AA-TCG
43956270 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
43956298 CGAAAACACA
Statistics
Matches: 97, Mismatches: 8, Indels: 17
0.80 0.07 0.14
Matches are distributed among these distances:
41 3 0.03
42 29 0.30
43 33 0.34
44 31 0.32
45 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAAATCAAATCG
Found at i:43957227 original size:15 final size:15
Alignment explanation
Indices: 43957207--43957236 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
43957197 AATTATGCCC
43957207 TTAATTCATAAACAT
1 TTAATTCATAAACAT
*
43957222 TTAATTCATTAACAT
1 TTAATTCATAAACAT
43957237 ATAAGGTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (15 bp):
TTAATTCATAAACAT
Found at i:43962418 original size:43 final size:43
Alignment explanation
Indices: 43962336--43962420 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
43962326 ATCAAGAACA
* * * *
43962336 TCTTTCCCTAATTGACAGGTGATTAAAGGTTTATTAGGAGGGC
1 TCTTTCCCTAATTAACAGGTGATTAAAGGCTGATCAGGAGGGC
*
43962379 TCTTTCCCTAATTAACATGTGATTAAAGGCTGATCAGGAGGG
1 TCTTTCCCTAATTAACAGGTGATTAAAGGCTGATCAGGAGGG
43962421 TTCAAGAACT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (43 bp):
TCTTTCCCTAATTAACAGGTGATTAAAGGCTGATCAGGAGGGC
Found at i:43963584 original size:15 final size:15
Alignment explanation
Indices: 43963564--43963599 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
43963554 CATTTGGATT
*
43963564 ATCATTGAAACCATG
1 ATCATTGAAACCAGG
*
43963579 ATCATTGAGACCAGG
1 ATCATTGAAACCAGG
43963594 ATCATT
1 ATCATT
43963600 CCTTTCCCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (15 bp):
ATCATTGAAACCAGG
Found at i:43969933 original size:47 final size:47
Alignment explanation
Indices: 43969774--43969933 Score: 230
Period size: 47 Copynumber: 3.4 Consensus size: 47
43969764 AAGATGGAAG
* * * *
43969774 TTATTGGCAGTTTATCTGTGATTTTGGTGGTTTGTCCACAATTTTGA
1 TTATTGACAGTATATCTGCGATTTTGGTGGCTTGTCCACAATTTTGA
** * *
43969821 TTATTGGTAGTATATCTGAGATTTTGGTGGCTTCTCCACAATTTTGA
1 TTATTGACAGTATATCTGCGATTTTGGTGGCTTGTCCACAATTTTGA
43969868 TTATTGACAGTATATCTGCGATTTTGGTGGCTTGTCCACAATTTTGA
1 TTATTGACAGTATATCTGCGATTTTGGTGGCTTGTCCACAATTTTGA
* *
43969915 TTATAGACAGTTTATCTGC
1 TTATTGACAGTATATCTGC
43969934 ATTACTATAA
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 102 1.00
ACGTcount: A:0.21, C:0.13, G:0.21, T:0.45
Consensus pattern (47 bp):
TTATTGACAGTATATCTGCGATTTTGGTGGCTTGTCCACAATTTTGA
Found at i:43970321 original size:7 final size:7
Alignment explanation
Indices: 43970307--43970359 Score: 88
Period size: 7 Copynumber: 7.4 Consensus size: 7
43970297 TTTAAAACTA
43970307 TTTGGAC
1 TTTGGAC
*
43970314 TATGGAC
1 TTTGGAC
43970321 TTTTGGAC
1 -TTTGGAC
43970329 TTTGGAC
1 TTTGGAC
43970336 TTTGGAC
1 TTTGGAC
43970343 TTTGGAC
1 TTTGGAC
43970350 TTTGGAC
1 TTTGGAC
43970357 TTT
1 TTT
43970360 ACTTTTATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
7 37 0.86
8 6 0.14
ACGTcount: A:0.15, C:0.13, G:0.26, T:0.45
Consensus pattern (7 bp):
TTTGGAC
Found at i:43978671 original size:38 final size:38
Alignment explanation
Indices: 43978620--43978694 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
43978610 GTATTCAGGT
* * *
43978620 TAAATCCTGCAGGCTTCGTGCTGGTATTATATCCGGGA
1 TAAATCCCGCAGGCCTAGTGCTGGTATTATATCCGGGA
*
43978658 TAAATCCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 TAAATCCCGCAGGCCTAGTGCTGGTATTATATCCGGG
43978695 CCTTCGTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (38 bp):
TAAATCCCGCAGGCCTAGTGCTGGTATTATATCCGGGA
Found at i:43978741 original size:43 final size:43
Alignment explanation
Indices: 43978666--43978854 Score: 267
Period size: 43 Copynumber: 4.4 Consensus size: 43
43978656 GATAAATCCC
* * *
43978666 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
43978707 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * *
43978750 GCAGGCTTCGTGCCAGTGATGTGTATTAGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
43978793 GCAGGCTTCA-TGCTGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTT-AGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
43978836 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
43978855 AATGATATGT
Statistics
Matches: 132, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
41 15 0.11
42 3 0.02
43 114 0.86
ACGTcount: A:0.14, C:0.23, G:0.33, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:43982017 original size:42 final size:42
Alignment explanation
Indices: 43981968--43982047 Score: 142
Period size: 42 Copynumber: 1.9 Consensus size: 42
43981958 GGACAGCAGC
*
43981968 AGTAACGTGATTTTGGAAAATCACTATAAATTCTGGGACAGA
1 AGTAACGTGATTTTGGAAAATCACCATAAATTCTGGGACAGA
*
43982010 AGTAACGTGATTTTGGAAAATCACCATAAATTGTGGGA
1 AGTAACGTGATTTTGGAAAATCACCATAAATTCTGGGA
43982048 GATGAGTTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.29
Consensus pattern (42 bp):
AGTAACGTGATTTTGGAAAATCACCATAAATTCTGGGACAGA
Found at i:43983757 original size:40 final size:40
Alignment explanation
Indices: 43983685--43983970 Score: 457
Period size: 40 Copynumber: 7.2 Consensus size: 40
43983675 AACCCAAGTA
* * **
43983685 CCTTCGGGATTTAG-CCAGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
43983724 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
43983764 CCTTCGGGACTTAGCCCGAATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
43983804 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
43983844 CCTTCGGGACTTAGCCCGAATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
43983884 CCTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
43983924 CCTTTGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
43983964 CCTTCGG
1 CCTTCGG
43983971 ATCTTAGTCC
Statistics
Matches: 230, Mismatches: 16, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
39 13 0.06
40 217 0.94
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:43991828 original size:39 final size:40
Alignment explanation
Indices: 43991774--43991859 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 40
43991764 AACCCAAGTA
* * * *
43991774 CCTTCTGGATTTAG-CCGGATATA-ACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCAGATATAGAC-ACTAGCACAAATG
*
43991813 CCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCAGATATAGACACTAGCACAAATG
43991853 CCTTCGG
1 CCTTCGG
43991860 ATCTTATTCC
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
39 12 0.30
40 27 0.68
41 1 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCAGATATAGACACTAGCACAAATG
Found at i:43994978 original size:43 final size:43
Alignment explanation
Indices: 43994923--43995077 Score: 265
Period size: 43 Copynumber: 3.6 Consensus size: 43
43994913 GCTAGTATTA
* *
43994923 TATTCAGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
43994966 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
43995009 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
43995052 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
43995078 GTAATACCGG
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 105 1.00
ACGTcount: A:0.12, C:0.25, G:0.33, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:44001875 original size:147 final size:147
Alignment explanation
Indices: 44001608--44001917 Score: 557
Period size: 147 Copynumber: 2.1 Consensus size: 147
44001598 AAAACAAAGC
*
44001608 CACACGACCATGTGGCCAGGCTGTGTGGGAGGGTCCAGACTGTGTGACAGTGTATGACTAAGGGA
1 CACACGACCATGTGGCCAGGCCGTGTGGGAGGGTCCAGACTGTGTGACAGTGTATGACTAAGGGA
* * *
44001673 CACAGTCCTGTGGCTAGATAACACGACCATGTGACTTAATTACAACCTTGTGCGTGATTGAAAAA
66 CACAGTCCTATGGCTAGATAACACGACCATGTGACTTAATTACAACCTCGTGCGTGATCGAAAAA
44001738 TATTTCCCTATAGGGGT
131 TATTTCCCTATAGGGGT
*
44001755 CACACGACCATGTGGCCGGGCCGTGTGGGAGGGTCCAGACTGTGTGACAGTGTATGACTAAGGGA
1 CACACGACCATGTGGCCAGGCCGTGTGGGAGGGTCCAGACTGTGTGACAGTGTATGACTAAGGGA
*
44001820 CACAGTCCTATGGCTAGATAACAGGACCATGTGACTTAATTACAACCTCGTGCGTGATCGAAAAA
66 CACAGTCCTATGGCTAGATAACACGACCATGTGACTTAATTACAACCTCGTGCGTGATCGAAAAA
44001885 TATTTCCCTATAGGGGT
131 TATTTCCCTATAGGGGT
*
44001902 CACACGACCGTGTGGC
1 CACACGACCATGTGGC
44001918 TAGCCTGTGA
Statistics
Matches: 156, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
147 156 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (147 bp):
CACACGACCATGTGGCCAGGCCGTGTGGGAGGGTCCAGACTGTGTGACAGTGTATGACTAAGGGA
CACAGTCCTATGGCTAGATAACACGACCATGTGACTTAATTACAACCTCGTGCGTGATCGAAAAA
TATTTCCCTATAGGGGT
Found at i:44001947 original size:147 final size:147
Alignment explanation
Indices: 44001642--44001949 Score: 449
Period size: 147 Copynumber: 2.1 Consensus size: 147
44001632 GTGGGAGGGT
* *
44001642 CCAGACTGTGTGACAGTGTATGACTAAGGGACACAGTCCTGTGGCTAGATAACACGACCATGTGA
1 CCAGACCGTGTGACAGTGTATGACTAAGGGACACAGTCCTATGGCTAGATAACACGACCATGTGA
* *
44001707 CTTAATTACAACCTTGTGCGTGATTGAAAAATATTTCCCTATAGGGGTCACACGACCATGTGGCC
66 CTTAATTACAACCTCGTGCGTGATCGAAAAATATTTCCCTATAGGGGTCACACGACCATGTGGCC
* * ****
44001772 GGGCCGTGTGGGAGGGT
131 GAGCCGTGTGGCACACC
* *
44001789 CCAGACTGTGTGACAGTGTATGACTAAGGGACACAGTCCTATGGCTAGATAACAGGACCATGTGA
1 CCAGACCGTGTGACAGTGTATGACTAAGGGACACAGTCCTATGGCTAGATAACACGACCATGTGA
*
44001854 CTTAATTACAACCTCGTGCGTGATCGAAAAATATTTCCCTATAGGGGTCACACGACCGTGTGG-C
66 CTTAATTACAACCTCGTGCGTGATCGAAAAATATTTCCCTATAGGGGTCACACGACCATGTGGCC
*
44001918 TAGCC-TGTGAGACACACC
131 GAGCCGTGTG-G-CACACC
*
44001936 CCAGGCCGTGTGAC
1 CCAGACCGTGTGAC
44001950 TTACAAATTA
Statistics
Matches: 145, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
145 4 0.03
146 5 0.03
147 136 0.94
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (147 bp):
CCAGACCGTGTGACAGTGTATGACTAAGGGACACAGTCCTATGGCTAGATAACACGACCATGTGA
CTTAATTACAACCTCGTGCGTGATCGAAAAATATTTCCCTATAGGGGTCACACGACCATGTGGCC
GAGCCGTGTGGCACACC
Found at i:44004012 original size:20 final size:19
Alignment explanation
Indices: 44003976--44004026 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
44003966 GAGGGCTATT
*
44003976 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
44003995 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
44004015 TT-TAAAT-TGTGA
1 TTGTAAATGTGTGA
44004027 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 5 0.17
19 2 0.07
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:44004635 original size:49 final size:49
Alignment explanation
Indices: 44004578--44004754 Score: 196
Period size: 49 Copynumber: 3.6 Consensus size: 49
44004568 TGTTGTGTGT
*
44004578 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAAAGC
* * * * ** * *
44004627 CAGTGTAAGACCTGTTTGGGACACGGCATCGGCCTCAATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAAAGC
* * * **
44004676 CAGTGTAAGACTTGTCTAGGACATGGCATCGACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAAAGC
*
44004723 CTGTGTAAGACCATGTCTGGGACATGGCATCG
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCG
44004755 GCATCTTATC
Statistics
Matches: 103, Mismatches: 24, Indels: 3
0.79 0.18 0.02
Matches are distributed among these distances:
47 14 0.14
48 18 0.17
49 71 0.69
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAAAGC
Found at i:44004685 original size:98 final size:97
Alignment explanation
Indices: 44004576--44004756 Score: 265
Period size: 98 Copynumber: 1.9 Consensus size: 97
44004566 CTTGTTGTGT
*
44004576 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAGAGCCAGTGTAAGACC-T
1 GTCAGTGTAAGACCTGTCTAGGACATGGCATCGACATTGAT-G-TGAGAGCCAGTGTAAGACCAT
*
44004640 GTTTGGGACACGGCATCGGCCTCAATATATGAAA
64 GTCTGGGACACGGCATCGGCCTCAATATATGAAA
* * ** *
44004674 GTCAGTGTAAGACTTGTCTAGGACATGGCATCGACTTTGATGTGCTAGCCTGTGTAAGACCATGT
1 GTCAGTGTAAGACCTGTCTAGGACATGGCATCGACATTGATGTGAGAGCCAGTGTAAGACCATGT
*
44004739 CTGGGACATGGCATCGGC
66 CTGGGACACGGCATCGGC
44004757 ATCTTATCCC
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
96 16 0.22
97 20 0.27
98 38 0.51
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (97 bp):
GTCAGTGTAAGACCTGTCTAGGACATGGCATCGACATTGATGTGAGAGCCAGTGTAAGACCATGT
CTGGGACACGGCATCGGCCTCAATATATGAAA
Found at i:44008024 original size:25 final size:25
Alignment explanation
Indices: 44007996--44008045 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
44007986 AATCATGCAC
44007996 TAGAACTCTTTTGTTTTATTTAAAT
1 TAGAACTCTTTTGTTTTATTTAAAT
44008021 TAGAACTCTTTTGTTTTATTTAAAT
1 TAGAACTCTTTTGTTTTATTTAAAT
44008046 CATTTACTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (25 bp):
TAGAACTCTTTTGTTTTATTTAAAT
Found at i:44010008 original size:40 final size:40
Alignment explanation
Indices: 44009957--44010113 Score: 242
Period size: 40 Copynumber: 3.9 Consensus size: 40
44009947 ATAACCGCAA
* * * *
44009957 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
44009997 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
44010037 GCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
44010077 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
44010114 ATGCTCATGC
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:44010064 original size:80 final size:80
Alignment explanation
Indices: 44009961--44010113 Score: 270
Period size: 80 Copynumber: 1.9 Consensus size: 80
44009951 CCGCAAGCAC
* *
44009961 AATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGA
1 AATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGA
44010026 TATATCAACTTGCAT
66 TATATCAACTTGCAT
* *
44010041 AATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGA
1 AATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGA
44010106 TATATCAA
66 TATATCAA
44010114 ATGCTCATGC
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 69 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (80 bp):
AATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGA
TATATCAACTTGCAT
Found at i:44016023 original size:25 final size:25
Alignment explanation
Indices: 44015995--44016071 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
44015985 CGAATGGCCA
44015995 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
44016020 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
*
44016042 ATGTGATGAATATGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
44016067 ATGTG
1 ATGTG
44016072 GTAAAGCGGA
Statistics
Matches: 38, Mismatches: 7, Indels: 14
0.64 0.12 0.24
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 9 0.24
25 13 0.34
ACGTcount: A:0.35, C:0.10, G:0.26, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:44016048 original size:22 final size:22
Alignment explanation
Indices: 44015977--44016048 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
44015967 GTATATATGA
44015977 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
44015999 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
44016024 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
44016046 GAT
1 GAT
44016049 GAATATGAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:44016070 original size:47 final size:47
Alignment explanation
Indices: 44015948--44016144 Score: 207
Period size: 47 Copynumber: 4.1 Consensus size: 47
44015938 TTAGGATTTT
* ** * * *
44015948 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCA
* *
44015995 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCA
* * * *
44016042 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCGGAATGACTA
1 ATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCA
* * * *
44016089 ATGTGAAAT-ATGTATGAGATATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTG--ATGA-ATATGA-ACATGCATATATGTGATAAAGCCGAATGGCCA
44016139 ATGTGA
1 ATGTGA
44016145 AATATATATA
Statistics
Matches: 130, Mismatches: 16, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
47 89 0.68
48 2 0.02
49 7 0.05
50 32 0.25
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCA
Found at i:44016120 original size:50 final size:50
Alignment explanation
Indices: 44016059--44016205 Score: 174
Period size: 50 Copynumber: 2.9 Consensus size: 50
44016049 GAATATGAAC
* *
44016059 ATGCATATATGTGGTAAAGCGGAATGACTAATGTGAAATATGTA-TGAGAT
1 ATGCATATATGTGGTAAAGCCGAATG-CTAATGTGAAATATGTAGTGAAAT
* *
44016109 ATGCATATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGTGAAAT
1 ATGCATATATGTGGTAAAGCCGAATGCT-AATGTG-AA-ATATGTA-GTGAAAT
*
44016163 ATG--TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAG
1 ATGCATATATGTGGTAAAGCCGAAT-GCTAATGTGAAATATGTAG
44016206 GCGATGTGCG
Statistics
Matches: 84, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
49 2 0.02
50 37 0.44
51 4 0.05
52 31 0.37
53 2 0.02
54 8 0.10
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.31
Consensus pattern (50 bp):
ATGCATATATGTGGTAAAGCCGAATGCTAATGTGAAATATGTAGTGAAAT
Found at i:44016159 original size:15 final size:15
Alignment explanation
Indices: 44016139--44016173 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
44016129 CGAATGGTCA
44016139 ATGTGAAATATATAT
1 ATGTGAAATATATAT
*
44016154 ATGTGAAATATGTAT
1 ATGTGAAATATATAT
44016169 ATGTG
1 ATGTG
44016174 GTAAAGCCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (15 bp):
ATGTGAAATATATAT
Found at i:44016182 original size:52 final size:51
Alignment explanation
Indices: 44016016--44016201 Score: 174
Period size: 52 Copynumber: 3.7 Consensus size: 51
44016006 GTGAACATGC
* * * * *
44016016 ATATATGTGATAAGGCCGAATGGCCAATGTG--AT-GA-ATATG-AACATG
1 ATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAAATATG
* * * *
44016062 CATATATGTGGTAAAGCGGAATGACTAATGTG-AA-ATATGTATGAGATATG
1 -ATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAAATATG
44016112 CATATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGTGAAATATG
1 -ATATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATA--TGAAATATG
*
44016166 -TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 ATATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
44016202 GTAGGCGATG
Statistics
Matches: 115, Mismatches: 14, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
47 26 0.23
48 2 0.02
49 5 0.04
50 32 0.28
51 2 0.02
52 39 0.34
53 1 0.01
54 8 0.07
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (51 bp):
ATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAAATATG
Found at i:44016404 original size:37 final size:37
Alignment explanation
Indices: 44016354--44016462 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
44016344 ATATATTCCG
*
44016354 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
1 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCA
*
44016391 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCA
* *
44016428 GGTAAGACCCGATAACTTCGTGTGGAGATTTTGTC
1 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
44016463 TGAGCTAAAG
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCA
Found at i:44018011 original size:40 final size:40
Alignment explanation
Indices: 44017728--44017999 Score: 418
Period size: 40 Copynumber: 6.8 Consensus size: 40
44017718 GAGAATTGAG
* * *
44017728 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
44017768 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
44017808 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
**
44017848 AGCAATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
44017888 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTTCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
44017928 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
44017968 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCA
44018000 ATCATGCTGG
Statistics
Matches: 214, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:44037062 original size:67 final size:67
Alignment explanation
Indices: 44036978--44037504 Score: 918
Period size: 67 Copynumber: 7.9 Consensus size: 67
44036968 TACACATTCG
44036978 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACACATGTGACCTAGCTACATTTATCTCG
1 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACACATGTGACCTAGCTACATTTATCTCG
44037043 TA
66 TA
44037045 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACACATGTGACCTAGCTACATTTATCTCG
1 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACACATGTGACCTAGCTACATTTATCTCG
44037110 TA
66 TA
44037112 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACACATGTGACCTAGCTACATTTATCTCG
1 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACACATGTGACCTAGCTACATTTATCTCG
44037177 TA
66 TA
44037179 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACACATGTGACCTAGCTACATTTATCTCG
1 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACACATGTGACCTAGCTACATTTATCTCG
44037244 TA
66 TA
44037246 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACACATGTGACCTAGCTACATTTATCTCG
1 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACACATGTGACCTAGCTACATTTATCTCG
44037311 TA
66 TA
44037313 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACACATGTGACCTAGCTACATTTATCTCG
1 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACACATGTGACCTAGCTACATTTATCTCG
44037378 TA
66 TA
* *
44037380 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACACATGCGACCTAGCTACCACATAGTAT
1 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACACATGTGACCTAGCT---ACAT-TTAT
44037445 CTCGTA
62 CTCGTA
* * * * *
44037451 GCTCTCTTGTAC-ACATGATG---TGCACTTAGCACCATACATGTGACCTAGCTACAT
1 GCTCTCTTGT-CTACATGGTGTCCTTCACTTGGAACCACACATGTGACCTAGCTACAT
44037505 ACCATCTATA
Statistics
Matches: 447, Mismatches: 8, Indels: 12
0.96 0.02 0.03
Matches are distributed among these distances:
65 4 0.01
67 387 0.87
68 25 0.06
70 4 0.01
71 26 0.06
72 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.17, T:0.33
Consensus pattern (67 bp):
GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACACATGTGACCTAGCTACATTTATCTCG
TA
Found at i:44047606 original size:43 final size:44
Alignment explanation
Indices: 44047545--44047665 Score: 165
Period size: 43 Copynumber: 2.8 Consensus size: 44
44047535 CACGTAACCA
* *
44047545 AATAACGATGCCAATGTCCTAGACATGGTCTTACACATAATC-G
1 AATAACGATGCCAATGTCCCAAACATGGTCTTACACATAATCAG
* *
44047588 AATAACGATGCCAATGTCCCAAACATGGTCTTACACGTAATCAT
1 AATAACGATGCCAATGTCCCAAACATGGTCTTACACATAATCAG
* **
44047632 AAT-ACAATGAAAATGTCCCAAACATGGTCTTACA
1 AATAACGATGCCAATGTCCCAAACATGGTCTTACA
44047666 TGGAATAACA
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
43 67 0.96
44 3 0.04
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (44 bp):
AATAACGATGCCAATGTCCCAAACATGGTCTTACACATAATCAG
Found at i:44048319 original size:45 final size:45
Alignment explanation
Indices: 44048260--44048353 Score: 188
Period size: 45 Copynumber: 2.1 Consensus size: 45
44048250 ATCAAGACTC
44048260 AAAAACATCAAGCTATCATCAATGGCATTTTACAAAATCACAAAA
1 AAAAACATCAAGCTATCATCAATGGCATTTTACAAAATCACAAAA
44048305 AAAAACATCAAGCTATCATCAATGGCATTTTACAAAATCACAAAA
1 AAAAACATCAAGCTATCATCAATGGCATTTTACAAAATCACAAAA
44048350 AAAA
1 AAAA
44048354 CTCAAAAATT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.53, C:0.19, G:0.06, T:0.21
Consensus pattern (45 bp):
AAAAACATCAAGCTATCATCAATGGCATTTTACAAAATCACAAAA
Found at i:44050271 original size:30 final size:30
Alignment explanation
Indices: 44050237--44050293 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
44050227 AATTTCTCAA
44050237 AACACATATTCGGCCAACGAATCTTAACAG
1 AACACATATTCGGCCAACGAATCTTAACAG
*
44050267 AACACATATTCGGCCTACGAATCTTAA
1 AACACATATTCGGCCAACGAATCTTAA
44050294 ACAATCATCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.26, G:0.12, T:0.23
Consensus pattern (30 bp):
AACACATATTCGGCCAACGAATCTTAACAG
Found at i:44055230 original size:43 final size:43
Alignment explanation
Indices: 44055160--44056102 Score: 1689
Period size: 43 Copynumber: 22.0 Consensus size: 43
44055150 TATTTAACTC
* * * * *
44055160 ATACAATGCC-ATATCCCAGATATGGTCTTACATGTTACCA-C
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
* * * * *
44055201 ATATCGATGCCATTGTCCCAGACAGGGTCTTACACGAAATCGATTA
1 ATA-CAATGCCAATGTCCCAGACATGGTCTTACATGTAATC-A-TA
* * *
44055247 AT--GATGCCAATGTCCCAAACATGGTCTTACATGTAAT-AGA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
*
44055287 ATAACGATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 AT-ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44055331 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44055374 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44055417 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44055460 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44055503 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44055546 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44055589 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44055632 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44055675 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44055718 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44055761 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44055804 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44055847 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44055890 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44055933 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44055976 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44056019 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
44056062 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
44056103 CATCTCGGCA
Statistics
Matches: 874, Mismatches: 19, Indels: 16
0.96 0.02 0.02
Matches are distributed among these distances:
40 3 0.00
41 4 0.00
42 6 0.01
43 854 0.98
44 5 0.01
46 2 0.00
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.28
Consensus pattern (43 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA
Found at i:44061801 original size:27 final size:27
Alignment explanation
Indices: 44061771--44061824 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
44061761 CCGCTTAATG
*
44061771 CAAATTACCTCCATTATAAGCCACATT
1 CAAATTACCTACATTATAAGCCACATT
44061798 CAAATTACCTACATTATAAGCCACATT
1 CAAATTACCTACATTATAAGCCACATT
44061825 AACTTCTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.39, C:0.28, G:0.04, T:0.30
Consensus pattern (27 bp):
CAAATTACCTACATTATAAGCCACATT
Found at i:44074488 original size:44 final size:44
Alignment explanation
Indices: 44074438--44074596 Score: 150
Period size: 43 Copynumber: 3.7 Consensus size: 44
44074428 TATGTGTTTT
*
44074438 TGTGTAAGACCATGTCTGGGACGTTGGCATCGACT-TATGATTTA
1 TGTGTAAGACCATGTCTGGGACGTTGGCATCGA-TATTTGATTTA
* *
44074482 TGTGTAAGACCATGGT-TGGGACATCGGCATC-ATATTTGATTT-
1 TGTGTAAGACCAT-GTCTGGGACGTTGGCATCGATATTTGATTTA
* * *
44074524 TGTGTAAGACCCTATCTGGGACAG-TGGCATTGATATTTGA-TTA
1 TGTGTAAGACCATGTCTGGGAC-GTTGGCATCGATATTTGATTTA
** * * *
44074567 CATGTAAAACCACGTCTAGGACGTTGGCAT
1 TGTGTAAGACCATGTCTGGGACGTTGGCAT
44074597 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 15, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
41 1 0.01
42 27 0.29
43 37 0.40
44 26 0.28
45 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (44 bp):
TGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTTA
Found at i:44074544 original size:42 final size:41
Alignment explanation
Indices: 44074435--44074565 Score: 131
Period size: 44 Copynumber: 3.0 Consensus size: 41
44074425 CTATATGTGT
* *
44074435 TTTTGTGTAAGACCATGTCTGGGACGTTGGCATCGACT-TATGA
1 TTTTGTGTAAGACCATGTCTGGGAC-ATGGCATC-A-TATTTGA
44074478 TTTATGTGTAAGACCATGGT-TGGGACATCGGCATCATATTTGA
1 TTT-TGTGTAAGACCAT-GTCTGGGACAT-GGCATCATATTTGA
* * *
44074521 TTTTGTGTAAGACCCTATCTGGGACAGTGGCATTGATATTTGA
1 TTTTGTGTAAGACCATGTCTGGGACA-TGGCA-TCATATTTGA
44074564 TT
1 TT
44074566 ACATGTAAAA
Statistics
Matches: 76, Mismatches: 5, Indels: 14
0.80 0.05 0.15
Matches are distributed among these distances:
41 1 0.01
42 24 0.32
43 24 0.32
44 25 0.33
45 2 0.03
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.37
Consensus pattern (41 bp):
TTTTGTGTAAGACCATGTCTGGGACATGGCATCATATTTGA
Found at i:44075685 original size:42 final size:43
Alignment explanation
Indices: 44075605--44075685 Score: 103
Period size: 42 Copynumber: 1.9 Consensus size: 43
44075595 TACAATTTTG
* *
44075605 ACACGGCCTAGACACACGGGTGTGCCTATTGGCTGTGTGTGGC
1 ACACGGCCTAGACACACGGGCGTGCCTATTGGCCGTGTGTGGC
* *
44075648 ACACGGCCT-GGCACACGGGCGTGTC-ATGTGGCCGTGTG
1 ACACGGCCTAGACACACGGGCGTGCCTAT-TGGCCGTGTG
44075686 GAAAAGTCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.06
42 22 0.67
43 9 0.27
ACGTcount: A:0.15, C:0.27, G:0.37, T:0.21
Consensus pattern (43 bp):
ACACGGCCTAGACACACGGGCGTGCCTATTGGCCGTGTGTGGC
Found at i:44078432 original size:27 final size:26
Alignment explanation
Indices: 44078377--44078484 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
44078367 AAGCGTCCTA
* *
44078377 GTGGCTATGCCACAAATTATCTGATCTG
1 GTGGCTCTGCCAC--ATTATCTGTTCTG
*
44078405 GGGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAT-TATCTGTTCTG
44078432 GTGGCTCTGCCACGATTATCTGTATCTG
1 GTGGCTCTGCCAC-ATTATCTGT-TCTG
* *
44078460 GTGACTCTGTCACATTATCTGTTCT
1 GTGGCTCTGCCACATTATCTGTTCT
44078485 AGCAGCCATG
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 5 0.07
27 38 0.54
28 28 0.39
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGTTCTG
Found at i:44078468 original size:55 final size:54
Alignment explanation
Indices: 44078377--44078484 Score: 146
Period size: 55 Copynumber: 2.0 Consensus size: 54
44078367 AAGCGTCCTA
*
44078377 GTGGCTATGCCACAAATTATCTGATCTGGGGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTATGCCACAAATTATCTGATCTGGGGACTCTGCCACAT-TATCTGTTCTG
* * * *
44078432 GTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTCTGTCACATTATCTGTTCT
1 GTGGCTATGCCACAAATTATCTG-ATCTGGGGACTCTGCCACATTATCTGTTCT
44078485 AGCAGCCATG
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
54 18 0.38
55 29 0.62
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (54 bp):
GTGGCTATGCCACAAATTATCTGATCTGGGGACTCTGCCACATTATCTGTTCTG
Found at i:44083336 original size:44 final size:42
Alignment explanation
Indices: 44083278--44083397 Score: 125
Period size: 44 Copynumber: 2.8 Consensus size: 42
44083268 TGATATGTTT
* * *
44083278 TTTCGTGGAAGACCACATCTGGGACGTTGGCATTGTCATATGA
1 TTTCGTGTAAGACCACATCTGGGACATTGGCATCGT-ATATGA
** *
44083321 TTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
1 TTT-CGTGTAAGACCACATCTGGGACATTGGCATCGTATATGA
* * *
44083364 TTTCATGTAAGACC-CTGTCTGGGACAGTGGCATC
1 TTTCGTGTAAGACCAC-ATCTGGGACATTGGCATC
44083398 AATATTTGAT
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
42 27 0.41
43 11 0.17
44 28 0.42
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.32
Consensus pattern (42 bp):
TTTCGTGTAAGACCACATCTGGGACATTGGCATCGTATATGA
Found at i:44083384 original size:42 final size:43
Alignment explanation
Indices: 44083286--44083408 Score: 140
Period size: 42 Copynumber: 2.8 Consensus size: 43
44083276 TTTTTCGTGG
** * * * *
44083286 AAGACCACATCTGGGACGTTGGCATTGTCATATGATTTACGTGT
1 AAGACCATGTCTGGGACATTGGCATCGT-ATTTGATTTACATGT
44083330 AAGACCATGTCTGGGACATTGGCATCGTATTTGATTT-CATGT
1 AAGACCATGTCTGGGACATTGGCATCGTATTTGATTTACATGT
* * *
44083372 AAGACCCTGTCTGGGACAGTGGCATCAATATTTGATT
1 AAGACCATGTCTGGGACATTGGCATC-GTATTTGATT
44083409 ACAAGCTTTC
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 28 0.41
43 17 0.25
44 24 0.35
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (43 bp):
AAGACCATGTCTGGGACATTGGCATCGTATTTGATTTACATGT
Found at i:44086440 original size:46 final size:45
Alignment explanation
Indices: 44086379--44086560 Score: 165
Period size: 46 Copynumber: 3.9 Consensus size: 45
44086369 TTTTGGTCAC
* * *
44086379 TTATGTGAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACA
1 TTATGAGAGCCAGTGTAAGACATGTCTAGGACATGCATTGGCC-CA
*
44086425 TTATGAGAGCCAGTGTAAGACCATGTCTCGGACATGGCATTGG--CA
1 TTATGAGAGCCAGTGTAAGA-CATGTCTAGGACAT-GCATTGGCCCA
* * *
44086470 TTGA-GACGAGTGCTAGTGTAAGACATGCCTAGGACATGCATTGGCCTCG
1 TT-ATGA-GA--GCCAGTGTAAGACATGTCTAGGACATGCATTGGCC-CA
* * *
44086519 TAACGTA-AGCCAGTGTAAGACATGTCCAGGACATGCATTGGC
1 TTATG-AGAGCCAGTGTAAGACATGTCTAGGACATGCATTGGC
44086561 TAAGAGTTGT
Statistics
Matches: 113, Mismatches: 12, Indels: 22
0.77 0.08 0.15
Matches are distributed among these distances:
45 6 0.05
46 59 0.52
47 25 0.22
48 19 0.17
49 3 0.03
50 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (45 bp):
TTATGAGAGCCAGTGTAAGACATGTCTAGGACATGCATTGGCCCA
Found at i:44093665 original size:43 final size:44
Alignment explanation
Indices: 44093522--44093678 Score: 162
Period size: 43 Copynumber: 3.6 Consensus size: 44
44093512 TGTGTTTTCG
* * * * *
44093522 TGTAAGACCACGTCTGGGACATTGGAATCGACATATGATTTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTACA
* * *
44093566 TGTAAGACCATGTCTGAGACA-TCGGCATTG-TATTTGATTTA-G
1 TGTAAGACCATGTCTGGGACAGT-GGCATCGATATTTGATTTACA
* *
44093608 TGTAAGACCCTGTCTAGGACAGTGGCATCGATATTTGA-TTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTACA
*
44093651 TGTAAGGCCATGTCTGGGAC-GTTGGCAT
1 TGTAAGACCATGTCTGGGACAG-TGGCAT
44093679 TGTATGAGCT
Statistics
Matches: 93, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
42 28 0.30
43 41 0.44
44 24 0.26
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTACA
Found at i:44093678 original size:85 final size:86
Alignment explanation
Indices: 44093521--44093683 Score: 222
Period size: 85 Copynumber: 1.9 Consensus size: 86
44093511 ATGTGTTTTC
* *
44093521 GTGTAAGACCACGTCTGGGACATTGGAATCGACATATGATTTACATGTAAGACCATGTCTGAGAC
1 GTGTAAGACCACGTCTAGGACAGTGGAATCGACATATGATTTACATGTAAGACCATGTCTGAGAC
44093586 ATCGGCATTGTATTTGATTTA
66 ATCGGCATTGTATTTGATTTA
* * * * *
44093607 GTGTAAGACC-CTGTCTAGGACAGTGGCATCGATATTTGA-TTACATGTAAGGCCATGTCTGGGA
1 GTGTAAGACCAC-GTCTAGGACAGTGGAATCGACATATGATTTACATGTAAGACCATGTCTGAGA
* *
44093670 CGTTGGCATTGTAT
65 CATCGGCATTGTAT
44093684 GAGCTTTCTG
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
85 35 0.52
86 32 0.48
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (86 bp):
GTGTAAGACCACGTCTAGGACAGTGGAATCGACATATGATTTACATGTAAGACCATGTCTGAGAC
ATCGGCATTGTATTTGATTTA
Found at i:44116307 original size:47 final size:47
Alignment explanation
Indices: 44116234--44116363 Score: 161
Period size: 47 Copynumber: 2.8 Consensus size: 47
44116224 GTGCGAATAA
* * * *
44116234 TACCTTGATTTAGCTATGGGCTATGGTATAGGTATTCAAAAAGGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCAAAAAGAAGT
* **** *
44116281 TACCTTGATTTGGCTATGGCCCATGGTATAGGTACTCTGGGATAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCAAAAAGAAGT
*
44116328 TACCTTGCTTTGGCTATGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACT
44116364 TATCGATTGA
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCAAAAAGAAGT
Found at i:44119901 original size:37 final size:36
Alignment explanation
Indices: 44119842--44119936 Score: 129
Period size: 37 Copynumber: 2.6 Consensus size: 36
44119832 AGTACACAAG
* * *
44119842 TAATCCAACCGAAACACGCCAAATGCT-CATAAGGGC
1 TAATCCAACCGTAACACGCCAAATACTCCA-AAGAGC
44119878 TAATCCAACCGTTAACACGCCAAATACTCCAAAGAGC
1 TAATCCAACCG-TAACACGCCAAATACTCCAAAGAGC
44119915 TAATCCAACCAGTAACACGCCA
1 TAATCCAACC-GTAACACGCCA
44119937 CGGCATATGT
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
36 11 0.21
37 39 0.74
38 3 0.06
ACGTcount: A:0.40, C:0.33, G:0.13, T:0.15
Consensus pattern (36 bp):
TAATCCAACCGTAACACGCCAAATACTCCAAAGAGC
Found at i:44124121 original size:8 final size:8
Alignment explanation
Indices: 44124108--44124136 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
44124098 ACTAATATCT
44124108 TTTTATAA
1 TTTTATAA
44124116 TTTTATAA
1 TTTTATAA
44124124 TTTTATAA
1 TTTTATAA
44124132 TTTTA
1 TTTTA
44124137 ATTTTAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (8 bp):
TTTTATAA
Found at i:44124547 original size:18 final size:18
Alignment explanation
Indices: 44124536--44124571 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
44124526 TAATTAACTC
44124536 GTAAATATTAATTAATAA
1 GTAAATATTAATTAATAA
44124554 GTAAATATTAATTAATAA
1 GTAAATATTAATTAATAA
44124572 TATTTACGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (18 bp):
GTAAATATTAATTAATAA
Found at i:44126684 original size:28 final size:29
Alignment explanation
Indices: 44126652--44126712 Score: 90
Period size: 28 Copynumber: 2.1 Consensus size: 29
44126642 CACATACTTG
44126652 TATATGGCCCA-CTAGGCCCAA-TCACATT
1 TATATGGCCCATC-AGGCCCAATTCACATT
*
44126680 TATATGGTCCATCAGGCCCAATTCACATT
1 TATATGGCCCATCAGGCCCAATTCACATT
44126709 TATA
1 TATA
44126713 GTCATGCATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 18 0.60
29 12 0.40
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.30
Consensus pattern (29 bp):
TATATGGCCCATCAGGCCCAATTCACATT
Found at i:44130574 original size:21 final size:19
Alignment explanation
Indices: 44130548--44130586 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
44130538 ATAAACTTGA
*
44130548 ATATA-AATTTTAAAATAAC
1 ATATATAATATTAAAA-AAC
44130567 ATATATAATATTAAAAAAC
1 ATATATAATATTAAAAAAC
44130586 A
1 A
44130587 AAAATTCTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
ATATATAATATTAAAAAAC
Found at i:44140128 original size:123 final size:123
Alignment explanation
Indices: 44140001--44140247 Score: 406
Period size: 123 Copynumber: 2.0 Consensus size: 123
44139991 TTTCGAACGA
* * * *
44140001 AATTTTCACGAAATTATTTCGTGAAATCGTAGACCATAAAAATATAATAAAAATAAAATTTTTCT
1 AATTTTCACAAAATCATTACGTGAAATCGTAGACCATAAAAATATAATAAAAATAAAATTTTCCT
*
44140066 CATCT-AATTTGTGGTCCCAAAACCACTATTCCGACTAAGCCTAAAATTGGGATGTTAC
66 CAT-TGAATTTGTGGTCCCAAAACCACTATTCCGACTAAGCCTAAAATCGGGATGTTAC
*
44140124 AATTTTCACAAAATCATTACGTGAAATCGTAGACCATAAAAATATAATAAAAATGAAATTTTCCT
1 AATTTTCACAAAATCATTACGTGAAATCGTAGACCATAAAAATATAATAAAAATAAAATTTTCCT
* *
44140189 CATTGAATTTGTGGTCCCAAAACCACTGTTCTGACTAAGCCTAAAATCGGGATGTTAC
66 CATTGAATTTGTGGTCCCAAAACCACTATTCCGACTAAGCCTAAAATCGGGATGTTAC
44140247 A
1 A
44140248 GTCTTGGTTA
Statistics
Matches: 115, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
122 1 0.01
123 114 0.99
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.31
Consensus pattern (123 bp):
AATTTTCACAAAATCATTACGTGAAATCGTAGACCATAAAAATATAATAAAAATAAAATTTTCCT
CATTGAATTTGTGGTCCCAAAACCACTATTCCGACTAAGCCTAAAATCGGGATGTTAC
Found at i:44140894 original size:46 final size:45
Alignment explanation
Indices: 44140842--44141009 Score: 166
Period size: 46 Copynumber: 3.6 Consensus size: 45
44140832 GTGAGCTAGA
44140842 GTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCAGCCACATTA-GAGAGCCAGT
* *
44140888 GTAAGACCATGTCTGGGACATGGCATC-G--GCATTGAGACGAGTGCTAGT
1 GTAAGA-CATGTCTGGGACAT-GCATCAGCCACATT-AGA-GA--GCCAGT
* *
44140936 GTAAGACATGTCTGGGAAATGCATCAGCCTCA--AGACGTAAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCAGCCACATTAGA-G--AGCCAGT
*
44140982 ATAAGACATGTCTGGGACATGCATCAGC
1 GTAAGACATGTCTGGGACATGCATCAGC
44141010 TACGAGATGT
Statistics
Matches: 104, Mismatches: 7, Indels: 22
0.78 0.05 0.17
Matches are distributed among these distances:
45 6 0.06
46 50 0.48
47 29 0.28
48 17 0.16
49 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (45 bp):
GTAAGACATGTCTGGGACATGCATCAGCCACATTAGAGAGCCAGT
Found at i:44141027 original size:22 final size:22
Alignment explanation
Indices: 44140999--44141042 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
44140989 ATGTCTGGGA
44140999 CATGCATCAGCTACGAGATGTG
1 CATGCATCAGCTACGAGATGTG
44141021 CATGCATCAGCTACGAGATGTG
1 CATGCATCAGCTACGAGATGTG
44141043 TCAGTGTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (22 bp):
CATGCATCAGCTACGAGATGTG
Found at i:44147421 original size:46 final size:48
Alignment explanation
Indices: 44147290--44147509 Score: 199
Period size: 46 Copynumber: 4.6 Consensus size: 48
44147280 GAGGCCGACA
*
44147290 CCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGT-GCCGATG
1 CCATGTCCCAGACA-GGTCTTACACTAGCTCT-ACATCT-CGTAGCCGATG
* *
44147340 CCATGTCCCAGACATGGTCTTACACTA--AC-ACATCTCGTAGTCGATG
1 CCATGTCCCAGACA-GGTCTTACACTAGCTCTACATCTCGTAGCCGATG
* * *
44147386 -CATGTCCCAGACACGTCTTACACTAGCT-TACATCTCG-AGGTCGTTG
1 CCATGTCCCAGACAGGTCTTACACTAGCTCTACATCTCGTA-GCCGATG
* * * *
44147432 -CATGTCCCAGACATGCCTTACACTAGCTCT-CGTCTCAATA-CCGATG
1 CCATGTCCCAGACAGGTCTTACACTAGCTCTACATCTC-GTAGCCGATG
* *
44147478 CCATGTCCCAGACATGATCTTACACTGGCTCT
1 CCATGTCCCAGACA-GGTCTTACACTAGCTCT
44147510 CATAATGTGG
Statistics
Matches: 144, Mismatches: 16, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
44 11 0.08
45 17 0.12
46 60 0.42
47 14 0.10
48 15 0.10
50 27 0.19
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (48 bp):
CCATGTCCCAGACAGGTCTTACACTAGCTCTACATCTCGTAGCCGATG
Found at i:44161638 original size:21 final size:21
Alignment explanation
Indices: 44161613--44161654 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
44161603 AAATTATAAC
* *
44161613 TAATATCTTAATAACATATAT
1 TAATATCGTAATAAAATATAT
44161634 TAATATCGTAATAAAATATAT
1 TAATATCGTAATAAAATATAT
44161655 AAAAATAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.40
Consensus pattern (21 bp):
TAATATCGTAATAAAATATAT
Found at i:44165202 original size:40 final size:40
Alignment explanation
Indices: 44165126--44165235 Score: 152
Period size: 40 Copynumber: 2.8 Consensus size: 40
44165116 TATCTAGCAC
* * *
44165126 AGCCTGCAGGTTTTTAA-TCCGGATAGC-ATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATA-CAATTCCAGCACGA
* *
44165165 AGCCTGTGGGTCTTTAAGCCCGGATACAATTCTAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
44165205 AGCCTGCGGGTCTTTAAGCCCGGATACAATT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATT
44165236 TCACATCAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 15 0.24
40 48 0.76
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
Found at i:44168329 original size:20 final size:20
Alignment explanation
Indices: 44168304--44168352 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
44168294 AAGTTTATGC
44168304 TAAGTAAATGAAATGGAAAG
1 TAAGTAAATGAAATGGAAAG
* *
44168324 TAAGTAAATGGAATGGTAAG
1 TAAGTAAATGAAATGGAAAG
*
44168344 AAAGTAAAT
1 TAAGTAAAT
44168353 TGAGTGGTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.24, T:0.22
Consensus pattern (20 bp):
TAAGTAAATGAAATGGAAAG
Found at i:44170281 original size:24 final size:25
Alignment explanation
Indices: 44170243--44170293 Score: 95
Period size: 24 Copynumber: 2.1 Consensus size: 25
44170233 CTTAGTTAGT
44170243 TAGTTAAAAAATTAAGGCATAAGTA
1 TAGTTAAAAAATTAAGGCATAAGTA
44170268 TAGTT-AAAAATTAAGGCATAAGTA
1 TAGTTAAAAAATTAAGGCATAAGTA
44170292 TA
1 TA
44170294 CTTATTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 21 0.81
25 5 0.19
ACGTcount: A:0.51, C:0.04, G:0.16, T:0.29
Consensus pattern (25 bp):
TAGTTAAAAAATTAAGGCATAAGTA
Found at i:44170482 original size:87 final size:87
Alignment explanation
Indices: 44170361--44170531 Score: 272
Period size: 87 Copynumber: 2.0 Consensus size: 87
44170351 GCTTAGTTAG
* * *
44170361 TTAGTTAATTAAGGCATTATTAAACTTATTTTAATTATAATTTAATTTAAGTGGGACAATTGGTT
1 TTAGTTAATTAAGACATTATTAAACTTATTTTAATTATAATTTAATCTAAATGGGACAATTGGTT
44170426 GAATTACCATTTTGATATTATT
66 GAATTACCATTTTGATATTATT
*
44170448 TTAGTTAATTAAGACA-TATTTAAACTTATTTTAATTATAATTTAATCTAAATGGGACAATTTGT
1 TTAGTTAATTAAGACATTA-TTAAACTTATTTTAATTATAATTTAATCTAAATGGGACAATTGGT
* *
44170512 TTAATTACTATTTTGATATT
65 TGAATTACCATTTTGATATT
44170532 TTGAATAATT
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
86 2 0.03
87 75 0.97
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.48
Consensus pattern (87 bp):
TTAGTTAATTAAGACATTATTAAACTTATTTTAATTATAATTTAATCTAAATGGGACAATTGGTT
GAATTACCATTTTGATATTATT
Found at i:44171033 original size:6 final size:6
Alignment explanation
Indices: 44171022--44171839 Score: 1636
Period size: 6 Copynumber: 136.3 Consensus size: 6
44171012 AGTCACAAAC
44171022 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
44171070 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
44171118 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
44171166 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
44171214 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
44171262 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
44171310 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
44171358 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
44171406 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
44171454 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
44171502 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
44171550 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
44171598 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
44171646 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
44171694 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
44171742 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
44171790 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
44171838 AT
1 AT
44171840 TTCAAACGTA
Statistics
Matches: 812, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 812 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
ATACAT
Found at i:44182654 original size:15 final size:16
Alignment explanation
Indices: 44182636--44182671 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
44182626 CCCCATTTTT
*
44182636 TTTTATATTATC-AAG
1 TTTTATAATATCAAAG
44182651 TTTTATAATATCAAAG
1 TTTTATAATATCAAAG
44182667 TTTTA
1 TTTTA
44182672 GATATGAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.53
Consensus pattern (16 bp):
TTTTATAATATCAAAG
Found at i:44183532 original size:17 final size:16
Alignment explanation
Indices: 44183506--44183537 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
44183496 AATTCGTTTA
44183506 ATATATATTTTAATAT
1 ATATATATTTTAATAT
44183522 ATATAATATTTTAATA
1 ATAT-ATATTTTAATA
44183538 ATTTAATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
ATATATATTTTAATAT
Found at i:44197508 original size:21 final size:21
Alignment explanation
Indices: 44197464--44197515 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
44197454 GGGTGACAAT
**
44197464 ACGGGCGTGTCTCTAAACTGC
1 ACGGGCGTGTCTCTAAACCAC
44197485 ACGGGCGTGTCTCTAAACCAC
1 ACGGGCGTGTCTCTAAACCAC
*
44197506 ACGGACGTGT
1 ACGGGCGTGT
44197516 GGTATTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (21 bp):
ACGGGCGTGTCTCTAAACCAC
Found at i:44199664 original size:36 final size:36
Alignment explanation
Indices: 44199617--44199689 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
44199607 CGGTGGAAAG
*
44199617 TAAATGTAGTAAAATCTGAACTGTATGCGAATTTCC
1 TAAATATAGTAAAATCTGAACTGTATGCGAATTTCC
*
44199653 TAAATATAGTAAAATCTGAACTGTATGTGAATTTCC
1 TAAATATAGTAAAATCTGAACTGTATGCGAATTTCC
44199689 T
1 T
44199690 GATGTATTCC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (36 bp):
TAAATATAGTAAAATCTGAACTGTATGCGAATTTCC
Found at i:44203018 original size:12 final size:13
Alignment explanation
Indices: 44203003--44203031 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
44202993 AATTGGGAGA
44203003 AAAAG-AAAAGGG
1 AAAAGAAAAAGGG
44203015 AAAAGAAAAAGGG
1 AAAAGAAAAAGGG
44203028 AAAA
1 AAAA
44203032 ATTAGAGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAGGG
Found at i:44215459 original size:40 final size:40
Alignment explanation
Indices: 44215415--44215639 Score: 260
Period size: 40 Copynumber: 5.6 Consensus size: 40
44215405 GCTACTCGTT
* *
44215415 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
44215455 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
44215495 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
44215535 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * ** *
44215574 CAAATGCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
*
44215615 CAAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
44215640 ATATCATTCG
Statistics
Matches: 159, Mismatches: 18, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 29 0.18
40 100 0.63
41 25 0.16
42 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:44215904 original size:186 final size:188
Alignment explanation
Indices: 44215586--44215962 Score: 553
Period size: 186 Copynumber: 2.0 Consensus size: 188
44215576 AATGCCTTCG
* * * *
44215586 GATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATCATTCGA
1 GATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGACATCATTCAA
* * *
44215651 GTAACCATGCACATATATCAATAAATCATGACACATTCATATTTCATTTTCATTACCAAAGCTCA
66 ATAACCATGCACATATAACAATAAATCATGACACATTCATATTTCATTTTCATTACCAAAACTCA
* * *
44215716 AACACAAGACACTTATCACAT-TTACAATTTCGGCTCAATAGCCACATA-TAAGAGCAT
131 AACACAAGACACTTATCA-ATCTTACAATGTCGGCTCAATAGCCACACACAAAGAGCAT
*
44215773 GATCTTAGTCCGGATATGGTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGACATCATTCAA
1 GATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGACATCATTCAA
* * * * *
44215837 ATAACCATGCACATTTAACAATAAATCATGGCACATTCGTATTTCATTTTCGTTAGCAAAACTCA
66 ATAACCATGCACATATAACAATAAATCATGACACATTCATATTTCATTTTCATTACCAAAACTCA
* **
44215902 AACACAAGACACTTATCATTCTTGTAATGTCGGCTCAATAGCCACACACAAAGAGCAT
131 AACACAAGACACTTATCAATCTTACAATGTCGGCTCAATAGCCACACACAAAGAGCAT
44215960 GAT
1 GAT
44215963 TTTGATTTGC
Statistics
Matches: 169, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
185 1 0.01
186 130 0.77
187 38 0.22
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (188 bp):
GATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGACATCATTCAA
ATAACCATGCACATATAACAATAAATCATGACACATTCATATTTCATTTTCATTACCAAAACTCA
AACACAAGACACTTATCAATCTTACAATGTCGGCTCAATAGCCACACACAAAGAGCAT
Found at i:44223394 original size:9 final size:11
Alignment explanation
Indices: 44223370--44223419 Score: 68
Period size: 11 Copynumber: 4.5 Consensus size: 11
44223360 CACAATAGTC
44223370 CTCTCACAATT
1 CTCTCACAATT
44223381 CTCTCACAATT
1 CTCTCACAATT
44223392 CTCTC-CAAATT
1 CTCTCAC-AATT
44223403 CTCTCA-AATTT
1 CTCTCACAA-TT
44223414 CTCTCA
1 CTCTCA
44223420 ACTTTTTTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
10 3 0.08
11 33 0.92
ACGTcount: A:0.26, C:0.36, G:0.00, T:0.38
Consensus pattern (11 bp):
CTCTCACAATT
Found at i:44225254 original size:18 final size:18
Alignment explanation
Indices: 44225231--44225273 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
44225221 TGCCAGGTGC
*
44225231 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
*
44225249 GTATCCTAACCCTTTTAT
1 GTATCCTAACCCTTATAT
*
44225267 GTTTCCT
1 GTATCCT
44225274 TTTCCCAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:44225560 original size:21 final size:22
Alignment explanation
Indices: 44225536--44225578 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
44225526 CTGTCAGAGG
**
44225536 AACCACAGTCCCCACC-GAAGC
1 AACCACAACCCCCACCGGAAGC
44225557 AACCACAACCCCCACCGGAAGC
1 AACCACAACCCCCACCGGAAGC
44225579 TAAACCAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.35, C:0.49, G:0.14, T:0.02
Consensus pattern (22 bp):
AACCACAACCCCCACCGGAAGC
Found at i:44225895 original size:131 final size:131
Alignment explanation
Indices: 44225680--44225928 Score: 419
Period size: 131 Copynumber: 1.9 Consensus size: 131
44225670 TGTAGAAACT
*
44225680 TTTTTTATATAGTTTCATATAATAAAATAAAAGTTGTTTTTAATATTTTAATTTTACATTACTTT
1 TTTTTTATATAGTTTCATATAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACATTACTTT
* * * *
44225745 TTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGCCAATATTTTTTATTATTTTTATATTTA
66 TTTTAATTTTAATAAAATAAATGTACTTTTAAATTAACCAATAATTTTTATTATTTTTATATTTA
44225810 A
131 A
*
44225811 TTTTTTATATAGTTTCA-ATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTT
1 TTTTTTATATAGTTTCATA-TAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACATTACTT
*
44225875 TTTTTAATTTTAATACAATAAATGTACTTTTAAATTAACCAATAATTTTTATTA
65 TTTTTAATTTTAATAAAATAAATGTACTTTTAAATTAACCAATAATTTTTATTA
44225929 AAATAAATGT
Statistics
Matches: 110, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
130 1 0.01
131 109 0.99
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (131 bp):
TTTTTTATATAGTTTCATATAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACATTACTTT
TTTTAATTTTAATAAAATAAATGTACTTTTAAATTAACCAATAATTTTTATTATTTTTATATTTA
A
Found at i:44227528 original size:34 final size:34
Alignment explanation
Indices: 44227485--44227553 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
44227475 TCCCACATAC
44227485 CATATATCTTTTCCAACACCTTCTACTTAGCTAT
1 CATATATCTTTTCCAACACCTTCTACTTAGCTAT
44227519 CATATATCTTTTCCAACACCTTCTACTTAGCTAT
1 CATATATCTTTTCCAACACCTTCTACTTAGCTAT
44227553 C
1 C
44227554 CAAACCTTGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.26, C:0.30, G:0.03, T:0.41
Consensus pattern (34 bp):
CATATATCTTTTCCAACACCTTCTACTTAGCTAT
Found at i:44229320 original size:125 final size:124
Alignment explanation
Indices: 44229051--44229350 Score: 437
Period size: 124 Copynumber: 2.4 Consensus size: 124
44229041 AGCCTAAGGC
* *
44229051 TTTTTCAGATACTACTGTAGCAAAAGAA-CGTCCACGTGGGAGCTTTTTTCCGTAATTTTACTGA
1 TTTTTCAGATACTACTGTAGCAAAA-AAGCGTCCACATGGGAGCTTTTTTCCGTAAATTTACTGA
44229115 CAGTGCATCCTGCTTGAAGCGTTTTGACACTATTTGTTTAGAAACATATTCTCAAAATTA
65 CAGTGCATCCTGCTTGAAGCGTTTTGACACTATTTGTTTAGAAACATATTCTCAAAATTA
* *
44229175 TTTTTCAGATACTACTGTAGCAAAAAAGCGTCCACATGTGAGCTTTTTTCCGTAAATTTGCT-AG
1 TTTTTCAGATACTACTGTAGCAAAAAAGCGTCCACATGGGAGCTTTTTTCCGTAAATTTACTGA-
* *
44229239 CAGTGCATCCTTCTTGAAGCGTTTTTGACACTATTT-TTTCAGAAACATCTTCTCAAAATTA
65 CAGTGCATCCTGCTTGAAGCG-TTTTGACACTATTTGTTT-AGAAACATATTCTCAAAATTA
* * **
44229300 TTTTTTCAAATACTAC-GTAGCAAAAGAGTATCCACATGGGAGCTTTTTTCC
1 -TTTTTCAGATACTACTGTAGCAAAAAAGCGTCCACATGGGAGCTTTTTTCC
44229351 ATAATTAATA
Statistics
Matches: 160, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
123 3 0.02
124 78 0.49
125 65 0.41
126 14 0.09
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (124 bp):
TTTTTCAGATACTACTGTAGCAAAAAAGCGTCCACATGGGAGCTTTTTTCCGTAAATTTACTGAC
AGTGCATCCTGCTTGAAGCGTTTTGACACTATTTGTTTAGAAACATATTCTCAAAATTA
Found at i:44230181 original size:17 final size:17
Alignment explanation
Indices: 44230157--44230199 Score: 61
Period size: 16 Copynumber: 2.5 Consensus size: 17
44230147 CTTCTATCTC
44230157 TATTTTTTTCTTTT-CT
1 TATTTTTTTCTTTTGCT
*
44230173 TATTTTTTTCTTTTGTT
1 TATTTTTTTCTTTTGCT
44230190 TATTTCTTTT
1 TATTT-TTTT
44230200 TATTCTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 14 0.58
17 6 0.25
18 4 0.17
ACGTcount: A:0.07, C:0.09, G:0.02, T:0.81
Consensus pattern (17 bp):
TATTTTTTTCTTTTGCT
Found at i:44231825 original size:4 final size:4
Alignment explanation
Indices: 44231808--44231849 Score: 50
Period size: 4 Copynumber: 10.5 Consensus size: 4
44231798 TAACTTAAGG
* *
44231808 ATTT ATTC ATTT ATTT ATTT -TTC ATGTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT ATTT ATTT AT-TT ATTT ATTT ATTT AT
44231850 GTACGAGCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
3 2 0.06
4 27 0.84
5 3 0.09
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (4 bp):
ATTT
Found at i:44231837 original size:16 final size:16
Alignment explanation
Indices: 44231808--44231846 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
44231798 TAACTTAAGG
44231808 ATTTATTCATTTATTT
1 ATTTATTCATTTATTT
44231824 ATTT-TTCATGTTATTT
1 ATTTATTCAT-TTATTT
44231840 ATTTATT
1 ATTTATT
44231847 TATGTACGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.24
16 14 0.67
17 2 0.10
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.69
Consensus pattern (16 bp):
ATTTATTCATTTATTT
Found at i:44235346 original size:17 final size:17
Alignment explanation
Indices: 44235307--44235347 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
44235297 ATAAATAATT
*
44235307 AATTAAATAAATTGGAA
1 AATTAAATAAATTGAAA
44235324 AA-TAAACTAAATT-AAA
1 AATTAAA-TAAATTGAAA
44235340 AATTAAAT
1 AATTAAAT
44235348 TCGAATTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.29
Consensus pattern (17 bp):
AATTAAATAAATTGAAA
Found at i:44237659 original size:31 final size:30
Alignment explanation
Indices: 44237621--44237684 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 30
44237611 TTGGCCCTCC
*
44237621 AAAAA-TTTAAAAAATTATAATTAAATCTTTT
1 AAAAATTTTAAAAAATT-TAATTAAA-CATTT
*
44237652 AAAAATTTTGAAAAATTTAATTAAACATTT
1 AAAAATTTTAAAAAATTTAATTAAACATTT
44237682 AAA
1 AAA
44237685 GTTTTTATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
30 7 0.23
31 13 0.43
32 10 0.33
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (30 bp):
AAAAATTTTAAAAAATTTAATTAAACATTT
Found at i:44239384 original size:28 final size:28
Alignment explanation
Indices: 44239344--44239402 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
44239334 AAGATCATGT
44239344 ATGAAAACAAAGATGCTAACGTGTTTCG
1 ATGAAAACAAAGATGCTAACGTGTTTCG
44239372 ATGAAAACAAAGATGCTAACGTGTTTCG
1 ATGAAAACAAAGATGCTAACGTGTTTCG
44239400 ATG
1 ATG
44239403 TTATTAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (28 bp):
ATGAAAACAAAGATGCTAACGTGTTTCG
Found at i:44262351 original size:26 final size:26
Alignment explanation
Indices: 44262322--44262371 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
44262312 GCTTTTAACA
*
44262322 ATTTTACTCTTGGTAAAATTTTGACG
1 ATTTTACCCTTGGTAAAATTTTGACG
*
44262348 ATTTTGCCCTTGGTAAAATTTTGA
1 ATTTTACCCTTGGTAAAATTTTGA
44262372 GAAAATATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.46
Consensus pattern (26 bp):
ATTTTACCCTTGGTAAAATTTTGACG
Found at i:44265584 original size:20 final size:22
Alignment explanation
Indices: 44265524--44265586 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
44265514 ACAGAGAGTT
44265524 ACACG-GCTATGTGCCTCCTCTC
1 ACACGCGC-ATGTGCCTCCTCTC
* * *
44265546 ACACGCGCGTGTGCTTCCTCTT
1 ACACGCGCATGTGCCTCCTCTC
*
44265568 ATA-G-GCATGTGCCTCCTCT
1 ACACGCGCATGTGCCTCCTCT
44265587 ACATGGGCGT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
20 13 0.38
21 1 0.03
22 18 0.53
23 2 0.06
ACGTcount: A:0.13, C:0.37, G:0.21, T:0.30
Consensus pattern (22 bp):
ACACGCGCATGTGCCTCCTCTC
Done.