Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 148 of 205
Found at i:44919978 original size:40 final size:40
Alignment explanation
Indices: 44919904--44920089 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
44919894 GCTCGATATC
* * *
44919904 TCGCACACTAAGTGCCATACATAGCCGAATCTATCTCAAA
1 TCGCACACTAAGTGCCATATATAGTCGAAGCTATCTCAAA
* *
44919944 TCGTACACTAAGTGCCATATATAGTCGAAGCTATCTC-GA
1 TCGCACACTAAGTGCCATATATAGTCGAAGCTATCTCAAA
* *
44919983 TCTTGCACACTAAGTTCCATATATAG-CTGAAGCTATGTCAAA
1 TC--GCACACTAAGTGCCATATATAGTC-GAAGCTATCTCAAA
* * * * **
44920025 TTGCACACTAAGTGCCACATATAGTCGAAACTATGTTGAA
1 TCGCACACTAAGTGCCATATATAGTCGAAGCTATCTCAAA
*
44920065 TCACACACTAAGTGCCACT-TATAGT
1 TCGCACACTAAGTGCCA-TATATAGT
44920090 TGATTTGTCA
Statistics
Matches: 122, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 3 0.02
40 86 0.70
41 31 0.25
42 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.27
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGTCGAAGCTATCTCAAA
Found at i:44920003 original size:81 final size:81
Alignment explanation
Indices: 44919901--44920081 Score: 229
Period size: 81 Copynumber: 2.2 Consensus size: 81
44919891 AGTGCTCGAT
* * *
44919901 ATCTCGCACACTAAGTGCCATACATAGCCGAATCTATCTCAAATCGTACACTAAGTGCCATATAT
1 ATCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCACATAT
*
44919966 AGTCGAAGCTATCTCG
66 AGTCGAAACTATCTCG
* * * * * *
44919982 ATCTTGCACACTAAGTTCCATATATAGCTGAAGCTATGTCAAATTGCACACTAAGTGCCACATAT
1 ATCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCACATAT
* *
44920047 AGTCGAAACTATGTTG
66 AGTCGAAACTATCTCG
* *
44920063 A-ATCACACACTAAGTGCCA
1 ATCTCGCACACTAAGTGCCA
44920082 CTTATAGTTG
Statistics
Matches: 84, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
80 14 0.17
81 70 0.83
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.27
Consensus pattern (81 bp):
ATCTCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCACATAT
AGTCGAAACTATCTCG
Found at i:44921155 original size:43 final size:43
Alignment explanation
Indices: 44921107--44921193 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
44921097 ACTTTCACAC
* *
44921107 ATACATATTCTCATGCTGTAAACACTTAAAATAATATTAAAAT
1 ATACATATTATCATACTGTAAACACTTAAAATAATATTAAAAT
* *
44921150 ATACATATTATGATACTGTAGACACTTAAAATAATATTAAAAT
1 ATACATATTATCATACTGTAAACACTTAAAATAATATTAAAAT
44921193 A
1 A
44921194 ATTTTACGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.48, C:0.11, G:0.06, T:0.34
Consensus pattern (43 bp):
ATACATATTATCATACTGTAAACACTTAAAATAATATTAAAAT
Found at i:44925534 original size:26 final size:27
Alignment explanation
Indices: 44925500--44925552 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
44925490 TAGTTATTTT
44925500 AAAGATAATTAAAATATTT-TAATAATA
1 AAAGATAATTAAAATATTTATAA-AATA
*
44925527 AAAG-TAATTAAAGTATTTATAAAATA
1 AAAGATAATTAAAATATTTATAAAATA
44925553 TGAAAAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (27 bp):
AAAGATAATTAAAATATTTATAAAATA
Found at i:44930146 original size:24 final size:24
Alignment explanation
Indices: 44930118--44930177 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 24
44930108 CCAATTGAAT
* *
44930118 AATATTTAAAATAAAATAAAATAA
1 AATATATAAAACAAAATAAAATAA
**
44930142 AATATATAAAACAATTTAAAATAAA
1 AATATATAAAACAAAATAAAAT-AA
44930167 TAATATATAAA
1 -AATATATAAA
44930178 TCAATTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 18 0.60
25 2 0.07
26 10 0.33
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (24 bp):
AATATATAAAACAAAATAAAATAA
Found at i:44930171 original size:26 final size:26
Alignment explanation
Indices: 44930115--44930288 Score: 190
Period size: 26 Copynumber: 6.8 Consensus size: 26
44930105 TTACCAATTG
* * **
44930115 AATAATATTTAAAATAAAATAAAAT-
1 AATAATATATAAAACAATTTAAAATA
44930140 AA-AATATATAAAACAATTTAAAATA
1 AATAATATATAAAACAATTTAAAATA
* *
44930165 AATAATATATAAATCAATTTGAAATA
1 AATAATATATAAAACAATTTAAAATA
* *
44930191 AATAACATATAAGACAATTTAAAATA
1 AATAATATATAAAACAATTTAAAATA
* **
44930217 AATAGTATATAAAATGATTTAAAATA
1 AATAATATATAAAACAATTTAAAATA
* * *
44930243 AATAGTATATGAAACAGTTTAAAATA
1 AATAATATATAAAACAATTTAAAATA
* *
44930269 AATAATACATAAAATAATTT
1 AATAATATATAAAACAATTT
44930289 GAAGCTGAAA
Statistics
Matches: 123, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
24 18 0.15
25 4 0.03
26 101 0.82
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (26 bp):
AATAATATATAAAACAATTTAAAATA
Found at i:44938006 original size:20 final size:20
Alignment explanation
Indices: 44937973--44938015 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
44937963 TCAAACTCTG
44937973 TTTTCATTAAAAACAAATGGT
1 TTTTCATTAAAAACAAA-GGT
* *
44937994 TTTTC-TTATAAACTAAGGT
1 TTTTCATTAAAAACAAAGGT
44938013 TTT
1 TTT
44938016 CAGAAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 6 0.30
20 9 0.45
21 5 0.25
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (20 bp):
TTTTCATTAAAAACAAAGGT
Found at i:44938548 original size:20 final size:19
Alignment explanation
Indices: 44938523--44938571 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
44938513 CATAAAATAT
*
44938523 CTGTTAATAAAATATCAAAA
1 CTGTTAATAAAACAT-AAAA
*
44938543 CTGTTAACTAATACATAAAA
1 CTGTTAA-TAAAACATAAAA
*
44938563 CTATTAATA
1 CTGTTAATA
44938572 CAGATAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 2 0.08
20 17 0.68
21 6 0.24
ACGTcount: A:0.51, C:0.12, G:0.04, T:0.33
Consensus pattern (19 bp):
CTGTTAATAAAACATAAAA
Found at i:44938835 original size:43 final size:42
Alignment explanation
Indices: 44938774--44938859 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 42
44938764 GGATGACACT
44938774 CTCTTTCAGGCCAAGTTTTAGAGTTTGGAGAGGGTCGCTGGG
1 CTCTTTCAGGCCAAGTTTTAGAGTTTGGAGAGGGTCGCTGGG
* *
44938816 NCTCTTTCAGGCCATGTTTTAGATTTTGGAGAGGGTCGCTGGG
1 -CTCTTTCAGGCCAAGTTTTAGAGTTTGGAGAGGGTCGCTGGG
44938859 C
1 C
44938860 CCAACACTAG
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 1 0.02
43 40 0.98
ACGTcount: A:0.15, C:0.17, G:0.34, T:0.33
Consensus pattern (42 bp):
CTCTTTCAGGCCAAGTTTTAGAGTTTGGAGAGGGTCGCTGGG
Found at i:44950423 original size:15 final size:14
Alignment explanation
Indices: 44950393--44950455 Score: 53
Period size: 15 Copynumber: 4.6 Consensus size: 14
44950383 CAACCTAATT
*
44950393 TTTATTTTAATTTTA
1 TTTATTTT-ATCTTA
44950408 TTTCA-TTTATTCTTA
1 TTT-ATTTTA-TCTTA
44950423 TTTATTTTATCTTA
1 TTTATTTTATCTTA
*
44950437 -TTATCTTAT-TTA
1 TTTATTTTATCTTA
44950449 -TTATTTT
1 TTTATTTT
44950456 TAGATATTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
12 9 0.21
13 8 0.19
14 7 0.17
15 17 0.40
16 1 0.02
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTATTTTATCTTA
Found at i:44954902 original size:55 final size:53
Alignment explanation
Indices: 44954772--44954966 Score: 198
Period size: 55 Copynumber: 3.6 Consensus size: 53
44954762 TTACCATTGA
*
44954772 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACTAATGC
1 CATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACTAATGC
* * *
44954825 CATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTA-TAAATGC
1 CATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACT-AATGC
*** * *
44954880 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAATTGC
1 CATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACTAA-TGC
* * *
44954935 CATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CATGTCTTGACATGGTCTTACATGGGATCCTT
44954967 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 15, Indels: 14
0.80 0.10 0.09
Matches are distributed among these distances:
52 2 0.02
53 36 0.30
54 8 0.07
55 71 0.60
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (53 bp):
CATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACTAATGC
Found at i:44956778 original size:10 final size:10
Alignment explanation
Indices: 44956763--44956810 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
44956753 TAATTTTAGG
44956763 ATTTAT-TTT
1 ATTTATCTTT
44956772 CATTTATCTTT
1 -ATTTATCTTT
*
44956783 AATTATCTTT
1 ATTTATCTTT
44956793 ATTTAT-TTGT
1 ATTTATCTT-T
44956803 ATTTATCT
1 ATTTATCT
44956811 GTTAGAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
9 2 0.06
10 27 0.82
11 4 0.12
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:44960257 original size:39 final size:39
Alignment explanation
Indices: 44960204--44960288 Score: 152
Period size: 39 Copynumber: 2.2 Consensus size: 39
44960194 ACTTTCCTCC
* *
44960204 TCTTCTTTCTCTTCTTTATGACTAATACTAGGACATATT
1 TCTTGTTTCCCTTCTTTATGACTAATACTAGGACATATT
44960243 TCTTGTTTCCCTTCTTTATGACTAATACTAGGACATATT
1 TCTTGTTTCCCTTCTTTATGACTAATACTAGGACATATT
44960282 TCTTGTT
1 TCTTGTT
44960289 AATGGTCATA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.21, C:0.20, G:0.09, T:0.49
Consensus pattern (39 bp):
TCTTGTTTCCCTTCTTTATGACTAATACTAGGACATATT
Found at i:44963674 original size:6 final size:5
Alignment explanation
Indices: 44963644--44963673 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
44963634 CATAAGTGAG
44963644 AAAAT AAAAT AAAAT AAAAT AAAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT -AAAAT AAAA
44963674 ACACACACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:44968111 original size:15 final size:16
Alignment explanation
Indices: 44968091--44968123 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
44968081 CCAATTTGAG
44968091 AATAAAAT-AAAATAA
1 AATAAAATAAAAATAA
44968106 AATAAAATAAAAATAA
1 AATAAAATAAAAATAA
44968122 AA
1 AA
44968124 ACACACACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (16 bp):
AATAAAATAAAAATAA
Found at i:44968124 original size:6 final size:5
Alignment explanation
Indices: 44968091--44968123 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
44968081 CCAATTTGAG
44968091 AATAA AATAA AATAA AATAA AATAAA AATAA AA
1 AATAA AATAA AATAA AATAA AAT-AA AATAA AA
44968124 ACACACACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:44971833 original size:40 final size:40
Alignment explanation
Indices: 44971778--44971860 Score: 132
Period size: 40 Copynumber: 2.1 Consensus size: 40
44971768 GTCTTTCCAC
*
44971778 ATGGCCATAGGGTTATGA-ATATAGTTTAAGAAACATGGCA
1 ATGGCCATAGGGTTAT-ATATATAGTTTAAGAAACAAGGCA
*
44971818 ATGGCCATAGGGTTATATATATAGTTTAAGATACAAGGCA
1 ATGGCCATAGGGTTATATATATAGTTTAAGAAACAAGGCA
44971858 ATG
1 ATG
44971861 AGATGGAGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
39 1 0.03
40 39 0.98
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (40 bp):
ATGGCCATAGGGTTATATATATAGTTTAAGAAACAAGGCA
Found at i:44974134 original size:14 final size:14
Alignment explanation
Indices: 44974111--44974145 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
44974101 TAAAACTTTT
44974111 CTTT-AAAACATAA
1 CTTTAAAAACATAA
44974124 CTTTAAAAACATAA
1 CTTTAAAAACATAA
*
44974138 CTTGAAAA
1 CTTTAAAA
44974146 CTTATCTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.54, C:0.14, G:0.03, T:0.29
Consensus pattern (14 bp):
CTTTAAAAACATAA
Found at i:44976389 original size:46 final size:45
Alignment explanation
Indices: 44976331--44976502 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 45
44976321 TATGTATGCT
* *
44976331 AGTGCAAGACATGTCTAGGACATCCATCGGCCACAATATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCA-AATATGAGAGCC
* *
44976377 AGTGTAAGACATGTCTGGGACATGCATCGGCTTCAAGATATTTA-AGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGC--CAA-ATA-TGAGAGCC
* * ** * * *
44976425 AATGTAAGACATGTCTGGGACATGCATC-GATATTGAGATGAGAGCT
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCA--AATATGAGAGCC
*
44976471 AGTGTAAGACATGTCTAAGACATGCATCGGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCC
44976503 TCGCGATATA
Statistics
Matches: 102, Mismatches: 16, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
45 3 0.03
46 58 0.57
47 3 0.03
48 36 0.35
49 2 0.02
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCAAATATGAGAGCC
Found at i:44976480 original size:94 final size:94
Alignment explanation
Indices: 44976368--44976542 Score: 242
Period size: 94 Copynumber: 1.9 Consensus size: 94
44976358 CGGCCACAAT
** * **
44976368 ATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTTCAAGATATTTAAGCCAATGTAAG
1 ATGAGAGCCAGTGTAAGACATGTCTAAGACATGCATCGGCCTCAAGATATACAAGCCAATGTAAG
*
44976433 ACATGTCTGGGACATGCATCGATATTGAG
66 ACATGTCTGAGACATGCATCGATATTGAG
* ** * *
44976462 ATGAGAGCTAGTGTAAGACATGTCTAAGACATGCATCGGCCTCGCGATATACAAGCTAGTGTAAG
1 ATGAGAGCCAGTGTAAGACATGTCTAAGACATGCATCGGCCTCAAGATATACAAGCCAATGTAAG
*
44976527 ACCTGTCTGAGACATG
66 ACATGTCTGAGACATG
44976543 GGGTCAACTT
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
94 69 1.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (94 bp):
ATGAGAGCCAGTGTAAGACATGTCTAAGACATGCATCGGCCTCAAGATATACAAGCCAATGTAAG
ACATGTCTGAGACATGCATCGATATTGAG
Found at i:44976616 original size:93 final size:93
Alignment explanation
Indices: 44976471--44976644 Score: 251
Period size: 93 Copynumber: 1.9 Consensus size: 93
44976461 GATGAGAGCT
* * *
44976471 AGTGTAAGACATGTCTAAGACATGCATCGGCCTCGCGATATACAAGCTAGTGTAAGACC-TGTCT
1 AGTGTAAGACATGTCTAAGACATGCATCAGCCTCGCGATATAAAAGCCAGTGTAAGACCATGTCT
*
44976535 GAGACATGGGGTCAACTTGTCGTGTGTC
66 GAGACATGGCGTCAACTTGTCGTGTGTC
* ** *
44976563 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGCTATATAAAAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTAAGACAT-GCATCAGCCTCGCGATATAAAAGCCAGTGTAAGACCATGTC
*
44976628 TGGGACATGGCGTCAAC
65 TGAGACATGGCGTCAAC
44976645 ATCTTAACCC
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
92 20 0.28
93 32 0.45
94 19 0.27
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (93 bp):
AGTGTAAGACATGTCTAAGACATGCATCAGCCTCGCGATATAAAAGCCAGTGTAAGACCATGTCT
GAGACATGGCGTCAACTTGTCGTGTGTC
Found at i:44985617 original size:94 final size:94
Alignment explanation
Indices: 44985423--44985636 Score: 234
Period size: 94 Copynumber: 2.3 Consensus size: 94
44985413 GATATGTGTA
* *
44985423 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATACGAGAGCCAGCGTAAGAAATGTCTA
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACGAGAGCCAGCGTAAGAAATGCCTA
* ** *
44985488 AGACATGCATTGGCCTCGAGATATTTAAT
66 AGACATGCATTGGCCTCGACATATACAAG
* * ** * * *
44985517 CCAGTGTAAGACATGTCTGAGACATGCATCGG-CATTGAGACGAGAGCTAGTGTAAGACATGCCT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCA-CAAGACGAGAGCCAGCGTAAGAAATGCCT
** * *
44985581 GGGACATGCATCT-GCCTTGCCATATACAAG
65 AAGACATGCAT-TGGCCTCGACATATACAAG
*
44985611 CTAGTGTAAGACCTGTCTGGGACATG
1 CTAGTGTAAGACATGTCTGGGACATG
44985637 GCGTCAGCTT
Statistics
Matches: 98, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
93 2 0.02
94 95 0.97
95 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.23
Consensus pattern (94 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACGAGAGCCAGCGTAAGAAATGCCTA
AGACATGCATTGGCCTCGACATATACAAG
Found at i:44985718 original size:49 final size:49
Alignment explanation
Indices: 44985657--44985781 Score: 155
Period size: 49 Copynumber: 2.5 Consensus size: 49
44985647 GTTGTGTGTT
* *
44985657 AGTGTAACACCTGTTTGGGACATGGCATCGACAC-CGATAGAT-GAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGGA-AGCC
* * * *
44985706 AGTGTAAGACCTGTCTAGGACATGGTATCGACCTCGCTATATGGAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGGAAGCC
44985755 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
44985782 GTTGGCATCT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
48 1 0.02
49 49 0.75
50 15 0.23
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGGAAGCC
Found at i:44993514 original size:53 final size:53
Alignment explanation
Indices: 44993434--44993534 Score: 159
Period size: 53 Copynumber: 1.9 Consensus size: 53
44993424 CTCCAAAAGT
* * *
44993434 ACCAACAGGATGATCGATAGTGTGATGAC-TTTTCCCAATGATCCCCGAGTCTA
1 ACCAACAAGATAATCGATAGTGTGATGACATTTT-CCAACGATCCCCGAGTCTA
44993487 ACCAACAAGATAATCGATAGTGTGATGACATTTTCCAACGATCCCCGA
1 ACCAACAAGATAATCGATAGTGTGATGACATTTTCCAACGATCCCCGA
44993535 CTCTGAGCTA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
53 40 0.91
54 4 0.09
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (53 bp):
ACCAACAAGATAATCGATAGTGTGATGACATTTTCCAACGATCCCCGAGTCTA
Found at i:44994055 original size:43 final size:43
Alignment explanation
Indices: 44993964--44994086 Score: 185
Period size: 43 Copynumber: 2.9 Consensus size: 43
44993954 TCACATATTG
* * * *
44993964 ATGCCACTGTCCTAGACAGGGTCTTACACG-AATCATAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACA
44994006 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACA
* *
44994049 ATGCCAATGTCCCAGAAATGGTCTTACATGTAATCACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
44994087 CCTCGACAAC
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
42 27 0.36
43 47 0.64
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACA
Found at i:45001979 original size:24 final size:22
Alignment explanation
Indices: 45001946--45001989 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
45001936 GATCCTTCCA
45001946 CCCTTAAAATATTTTCACTATTAG
1 CCCTTAAAAT-TTTTCA-TATTAG
*
45001970 CCCTTCAAATTTTTCATATT
1 CCCTTAAAATTTTTCATATT
45001990 TACACTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 6 0.32
24 9 0.47
ACGTcount: A:0.30, C:0.23, G:0.02, T:0.45
Consensus pattern (22 bp):
CCCTTAAAATTTTTCATATTAG
Found at i:45001989 original size:31 final size:30
Alignment explanation
Indices: 45001954--45002012 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
45001944 CACCCTTAAA
*
45001954 ATATTTTCACTATT-AGCCCTTCAAATTTTTC
1 ATATTTACACT-TTAAGCCCTT-AAATTTTTC
*
45001985 ATATTTACACTTTAATCCCTTAAATTTT
1 ATATTTACACTTTAAGCCCTTAAATTTT
45002013 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 9 0.36
31 16 0.64
ACGTcount: A:0.29, C:0.20, G:0.02, T:0.49
Consensus pattern (30 bp):
ATATTTACACTTTAAGCCCTTAAATTTTTC
Found at i:45002870 original size:49 final size:48
Alignment explanation
Indices: 45002798--45002894 Score: 185
Period size: 49 Copynumber: 2.0 Consensus size: 48
45002788 TTTTATCTCT
45002798 TCCGATAAGTCTAAAAGTTCTCTCACTGAGTTGGATTTCATAGATTTC
1 TCCGATAAGTCTAAAAGTTCTCTCACTGAGTTGGATTTCATAGATTTC
45002846 NTCCGATAAGTCTAAAAGTTCTCTCACTGAGTTGGATTTCATAGATTTC
1 -TCCGATAAGTCTAAAAGTTCTCTCACTGAGTTGGATTTCATAGATTTC
45002895 ATCTCAACTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.37
Consensus pattern (48 bp):
TCCGATAAGTCTAAAAGTTCTCTCACTGAGTTGGATTTCATAGATTTC
Found at i:45007602 original size:54 final size:55
Alignment explanation
Indices: 45007520--45007630 Score: 197
Period size: 54 Copynumber: 2.0 Consensus size: 55
45007510 TTGGCATCAA
*
45007520 CTTCAAGGATAAGATCAACTAGTTTGTGTTTGGATTTCAAATTTCAAATAC-AGG
1 CTTCAAGGATAAGATCAACTAGTTTGTGTTTGAATTTCAAATTTCAAATACAAGG
*
45007574 CTTCAAGGATAAGATCAAGTAGTTTGTGTTTGAATTTCAAATTTCAAATACAAGG
1 CTTCAAGGATAAGATCAACTAGTTTGTGTTTGAATTTCAAATTTCAAATACAAGG
45007629 CT
1 CT
45007631 GCCATACAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
54 49 0.91
55 5 0.09
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (55 bp):
CTTCAAGGATAAGATCAACTAGTTTGTGTTTGAATTTCAAATTTCAAATACAAGG
Found at i:45010812 original size:41 final size:41
Alignment explanation
Indices: 45010759--45010904 Score: 179
Period size: 41 Copynumber: 3.6 Consensus size: 41
45010749 CGCTGACTCA
* *
45010759 AAAAGCCCTTCGAGACCAAGCTCGAATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGAATTATGACACTGGCTC
* * * * * * * *
45010800 GAAGGCCCTTCGAAACTAGGTTCG-GTTATGTCACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGAATTATGACACTGGCTC
45010840 AAAAGCCCTTCGAGACCAAGCTC-AGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGA-ATTATGACACTGGCTC
45010881 AAAAGCCCTTCGAGACCAAGCTCG
1 AAAAGCCCTTCGAGACCAAGCTCG
45010905 GATTTAAACC
Statistics
Matches: 84, Mismatches: 18, Indels: 5
0.79 0.17 0.05
Matches are distributed among these distances:
40 29 0.35
41 55 0.65
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGAATTATGACACTGGCTC
Found at i:45015255 original size:18 final size:18
Alignment explanation
Indices: 45015232--45015273 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
45015222 AATGAATTGT
45015232 ATTAAATTGCTTGATGTG
1 ATTAAATTGCTTGATGTG
45015250 ATTAAATTGCTTGATGTG
1 ATTAAATTGCTTGATGTG
45015268 ATTAAA
1 ATTAAA
45015274 AATGCATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.43
Consensus pattern (18 bp):
ATTAAATTGCTTGATGTG
Found at i:45016465 original size:47 final size:47
Alignment explanation
Indices: 45016412--45016822 Score: 750
Period size: 47 Copynumber: 8.7 Consensus size: 47
45016402 TTAGGATTCT
45016412 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
45016459 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
45016506 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
45016553 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
45016600 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
45016647 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
45016694 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
45016741 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
45016788 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
45016823 TCCCGAAGGG
Statistics
Matches: 354, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 354 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:45016997 original size:37 final size:37
Alignment explanation
Indices: 45016941--45017019 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
45016931 CCGAGCTCTA
* * *
45016941 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
45016978 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
45017015 AAGAC
1 AAGAC
45017020 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:45018354 original size:40 final size:40
Alignment explanation
Indices: 45018243--45018358 Score: 142
Period size: 40 Copynumber: 2.9 Consensus size: 40
45018233 GAGTGAAATG
* * *
45018243 TCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATA
* * * *
45018283 TCCGGACTAAGTTCCGAAGAGCATTTGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATA
* * *
45018323 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
45018359 CGTGTATTCG
Statistics
Matches: 62, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 62 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATA
Found at i:45031628 original size:12 final size:12
Alignment explanation
Indices: 45031611--45031635 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45031601 ACGTCCTTAG
45031611 TCTAAAAGGAAA
1 TCTAAAAGGAAA
45031623 TCTAAAAGGAAA
1 TCTAAAAGGAAA
45031635 T
1 T
45031636 GTAACAGGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.08, G:0.16, T:0.20
Consensus pattern (12 bp):
TCTAAAAGGAAA
Found at i:45032437 original size:14 final size:14
Alignment explanation
Indices: 45032415--45032446 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
45032405 AAATGATGAA
*
45032415 TTTTCTTAAGTGAT
1 TTTTATTAAGTGAT
45032429 TTTTATTAAGTGAT
1 TTTTATTAAGTGAT
45032443 TTTT
1 TTTT
45032447 GATGAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.22, C:0.03, G:0.12, T:0.62
Consensus pattern (14 bp):
TTTTATTAAGTGAT
Found at i:45033136 original size:39 final size:39
Alignment explanation
Indices: 45033080--45033196 Score: 128
Period size: 39 Copynumber: 3.0 Consensus size: 39
45033070 TACTTTCTAT
* * *
45033080 TTGGCGTGATTCGGGTGGATCAGCTCTTATGACCTTCTG
1 TTGGCGTGTTTCAGGTGGATCAGCTCTTATGAGCTTCTG
* *
45033119 TTGGCGTGTTTCAGGTGGACCAGCTCTTATGAGCTTCATT
1 TTGGCGTGTTTCAGGTGGATCAGCTCTTATGAGCTTC-TG
* * * *
45033159 TTGGTGTATTT-TGGTTGGATCATCTCTTATGAGCTTCT
1 TTGGCGTGTTTCAGG-TGGATCAGCTCTTATGAGCTTCT
45033197 ATCTGGTGTG
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
39 36 0.55
40 30 0.45
ACGTcount: A:0.14, C:0.18, G:0.27, T:0.41
Consensus pattern (39 bp):
TTGGCGTGTTTCAGGTGGATCAGCTCTTATGAGCTTCTG
Found at i:45036000 original size:62 final size:59
Alignment explanation
Indices: 45035894--45036011 Score: 157
Period size: 62 Copynumber: 1.9 Consensus size: 59
45035884 AATCACTTTA
* *
45035894 TTATTAAATTAATAGTAATATTTATAAAGATAAATAATAGATTAAATTTAATATTAAATT
1 TTATTAAATTAATAGTAATATTTATAAAGATAAATAATAAATTAAATCTAAT-TTAAATT
* *
45035954 TTATTAAATTCATAG-AATATTTACCTAAAAGATAAATACTAAATTAAATCTAATTTAA
1 TTATTAAATTAATAGTAATATTTA--T-AAAGATAAATAATAAATTAAATCTAATTTAA
45036012 TATTAAATCT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
59 8 0.16
60 14 0.27
61 5 0.10
62 24 0.47
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (59 bp):
TTATTAAATTAATAGTAATATTTATAAAGATAAATAATAAATTAAATCTAATTTAAATT
Found at i:45038516 original size:4 final size:4
Alignment explanation
Indices: 45038503--45038533 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
45038493 TAGTTTTTTG
45038503 AATT -ATT AATT AATT AATT AATT AATT AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT
45038534 GACGCTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
AATT
Found at i:45048768 original size:17 final size:17
Alignment explanation
Indices: 45048746--45048780 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
45048736 CGTGGGGAGC
45048746 ACCAGTTCTGTTTGTTA
1 ACCAGTTCTGTTTGTTA
45048763 ACCAGTTCTGTTTGTTA
1 ACCAGTTCTGTTTGTTA
45048780 A
1 A
45048781 GAAGAAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.46
Consensus pattern (17 bp):
ACCAGTTCTGTTTGTTA
Found at i:45055314 original size:29 final size:29
Alignment explanation
Indices: 45055280--45055347 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
45055270 TTGTTCGTAC
* * *
45055280 CGATTGCACTTATTCATTGTAACCAATTT
1 CGATTGCACCTATTCATTGCAACAAATTT
*
45055309 TGATTGCACCTATTCATTGCAACAAATTT
1 CGATTGCACCTATTCATTGCAACAAATTT
*
45055338 CAATTGCACC
1 CGATTGCACC
45055348 GGTCGATGCA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (29 bp):
CGATTGCACCTATTCATTGCAACAAATTT
Found at i:45055801 original size:17 final size:16
Alignment explanation
Indices: 45055741--45055813 Score: 53
Period size: 16 Copynumber: 4.5 Consensus size: 16
45055731 ATAAACAAAT
45055741 AATATTTTTATATTTA
1 AATATTTTTATATTTA
*
45055757 AA-ATTATTTA-ATCTA
1 AATATT-TTTATATTTA
* *
45055772 ATTCATTTGATATATTTA
1 AAT-ATTT-TTATATTTA
45055790 AATA-TTTTATATATTA
1 AATATTTTTATAT-TTA
*
45055806 AAGATTTT
1 AATATTTT
45055814 GCAAATACAT
Statistics
Matches: 43, Mismatches: 7, Indels: 13
0.68 0.11 0.21
Matches are distributed among these distances:
15 13 0.30
16 15 0.35
17 9 0.21
18 6 0.14
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (16 bp):
AATATTTTTATATTTA
Found at i:45056813 original size:7 final size:7
Alignment explanation
Indices: 45056801--45056845 Score: 90
Period size: 7 Copynumber: 6.4 Consensus size: 7
45056791 TTGTTTCATA
45056801 CCATTTG
1 CCATTTG
45056808 CCATTTG
1 CCATTTG
45056815 CCATTTG
1 CCATTTG
45056822 CCATTTG
1 CCATTTG
45056829 CCATTTG
1 CCATTTG
45056836 CCATTTG
1 CCATTTG
45056843 CCA
1 CCA
45056846 CCCACTGACG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.16, C:0.31, G:0.13, T:0.40
Consensus pattern (7 bp):
CCATTTG
Found at i:45059158 original size:17 final size:17
Alignment explanation
Indices: 45059136--45059169 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
45059126 CCTCTGCTTG
45059136 GAATGACTTTAAGAACT
1 GAATGACTTTAAGAACT
45059153 GAATGACTTTAAGAACT
1 GAATGACTTTAAGAACT
45059170 ATCTTAAGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (17 bp):
GAATGACTTTAAGAACT
Found at i:45068683 original size:14 final size:15
Alignment explanation
Indices: 45068664--45068693 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
45068654 ACCAATAATG
45068664 TCCAAATT-TTAAAA
1 TCCAAATTATTAAAA
45068678 TCCAAATTATTAAAA
1 TCCAAATTATTAAAA
45068693 T
1 T
45068694 TAAAACCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TCCAAATTATTAAAA
Found at i:45069684 original size:18 final size:19
Alignment explanation
Indices: 45069652--45069692 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
45069642 TTTTCATGTA
45069652 TTATCTATTTAAAATTATT
1 TTATCTATTTAAAATTATT
*
45069671 TTAT-TATTTTAAATTATT
1 TTATCTATTTAAAATTATT
45069689 TTAT
1 TTAT
45069693 ATACCTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (19 bp):
TTATCTATTTAAAATTATT
Found at i:45069811 original size:13 final size:15
Alignment explanation
Indices: 45069782--45069823 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
45069772 CATTTTACCC
*
45069782 TTTTATGTA-TATAT
1 TTTTATATATTATAT
45069796 ATTTTA-ATATTATAT
1 -TTTTATATATTATAT
45069811 TTTTATATATTAT
1 TTTTATATATTAT
45069824 GTATATAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (15 bp):
TTTTATATATTATAT
Found at i:45075834 original size:19 final size:20
Alignment explanation
Indices: 45075794--45075837 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
45075784 GTCTCTTTAG
* *
45075794 GCATT-CATTTCATGCATCT
1 GCATTACATTGCATGCATAT
45075813 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
45075832 GCATTA
1 GCATTA
45075838 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:45078442 original size:7 final size:8
Alignment explanation
Indices: 45078421--45078450 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
45078411 TCTCATGAAT
45078421 TCAAAAAA
1 TCAAAAAA
45078429 TCAAAAAA
1 TCAAAAAA
45078437 TCAAAAAAA
1 TC-AAAAAA
45078446 TCAAA
1 TCAAA
45078451 GTCAAAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.73, C:0.13, G:0.00, T:0.13
Consensus pattern (8 bp):
TCAAAAAA
Found at i:45080742 original size:83 final size:83
Alignment explanation
Indices: 45080636--45080912 Score: 275
Period size: 83 Copynumber: 3.3 Consensus size: 83
45080626 TAAAGAAGCA
45080636 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGTAATCCTATCTCCTTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGTAATCCTATCTCCTTGAGATTA
45080701 CAATGGAGCGGATTAAAG
66 CAATGGAGCGGATTAAAG
* ** * * *
45080719 GATCTTATCTCTCTGA-AGTTACAGTAGA-CAAGATC-A-CATCAG--GTCTTATCT-CTCTGAG
1 GATCTTATCTCCCTGAGA-TTACAGCGGAGC-AGATCAAGGAT-AGTAATCCTATCTCCT-TGAG
* * **
45080777 ATTACAGTGGAACAGACCCAAGAATTTTA-
62 ATTACAATGG---AG---C--GGATTAAAG
45080806 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGTAATCCTATCTCCTTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGTAATCCTATCTCCTTGAGATTA
45080871 CAATGGAGCGGATTAAAG
66 CAATGGAGCGGATTAAAG
*
45080889 GATCTTATCTCTCTGA-AGTTACAG
1 GATCTTATCTCCCTGAGA-TTACAG
45080913 TAGAGAAGAT
Statistics
Matches: 152, Mismatches: 21, Indels: 42
0.71 0.10 0.20
Matches are distributed among these distances:
79 2 0.01
80 20 0.13
81 2 0.01
82 11 0.07
83 51 0.34
84 1 0.01
86 1 0.01
87 30 0.20
88 10 0.07
89 2 0.01
90 20 0.13
91 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (83 bp):
GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGTAATCCTATCTCCTTGAGATTA
CAATGGAGCGGATTAAAG
Found at i:45080924 original size:170 final size:170
Alignment explanation
Indices: 45080635--45081009 Score: 687
Period size: 170 Copynumber: 2.2 Consensus size: 170
45080625 TTAAAGAAGC
45080635 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGTAATCCTATCTCCTTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGTAATCCTATCTCCTTGAGATT
45080700 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGACAAGATCACATCAGGTCT
66 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGACAAGATCACATCAGGTCT
* *
45080765 TATCTCTCTGAGATTACAGTGGAACAGACCCAAGAATTTT
131 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTT
45080805 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGTAATCCTATCTCCTTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGTAATCCTATCTCCTTGAGATT
*
45080870 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
66 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGACAAGATCACATCAGGTCT
*
45080935 TATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTT
131 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTT
* * *
45080975 GGATCTTATCTCCCTGAGGTTACAGTGGAGCAGAT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGAT
45081010 TGAAGCCAGA
Statistics
Matches: 198, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
170 198 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.28
Consensus pattern (170 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGTAATCCTATCTCCTTGAGATT
ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGACAAGATCACATCAGGTCT
TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTT
Found at i:45081072 original size:87 final size:87
Alignment explanation
Indices: 45080981--45081142 Score: 218
Period size: 87 Copynumber: 1.9 Consensus size: 87
45080971 TTTTGGATCT
* * * *
45080981 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC-CAGAGATCTTATCTCCCTGAGATTACAGC
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAG-GATCTTATCTCCCTGAGATTACAGC
*
45081045 GGAGCAGATCGAAAACACTATCC
65 AGAGCAGATCGAAAACACTATCC
* * * *
45081068 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCA
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCA
*
45081133 GAGTAGATCG
66 GAGCAGATCG
45081143 CATCAGGTCT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
87 62 0.97
88 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.25
Consensus pattern (87 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCA
GAGCAGATCGAAAACACTATCC
Found at i:45081128 original size:44 final size:42
Alignment explanation
Indices: 45080608--45081130 Score: 215
Period size: 44 Copynumber: 12.2 Consensus size: 42
45080598 TGCCTTCATT
* *
45080608 GGTTACAGTGGAGCTGGTTAAAGA-AGCAGATCTTATCTCCCTGA
1 GGTTACAGTGGAGCAGATTAAA-ACAG--GATCTTATCTCCCTGA
* * * * * * * *
45080652 GATTACAGCGGAGCAGATCAAGGATAGTAATCCTATCTCCTTGA
1 GGTTACAGTGGAGCAGATTAA-AACAG-GATCTTATCTCCCTGA
* * * *
45080696 GATTACAATGGAGCGGATT--AA-AGGATCTTATCTCTCTGA
1 GGTTACAGTGGAGCAGATTAAAACAGGATCTTATCTCCCTGA
* * * * * *
45080735 AGTTACAGTAGA-CAAGATCACATCAGG-TCTTATCTCTCTGA
1 GGTTACAGTGGAGC-AGATTAAAACAGGATCTTATCTCCCTGA
* * ** *
45080776 GATTACAGTGGAACAGACCCAAGAATTTTA-GATCTTATCTCCCTGA
1 GGTTACAGTGGAGCAGA-TTAA-AA---CAGGATCTTATCTCCCTGA
* * * * * * * *
45080822 GATTACAGCGGAGCAGATCAAGGATAGTAATCCTATCTCCTTGA
1 GGTTACAGTGGAGCAGATTAA-AACAG-GATCTTATCTCCCTGA
* * * *
45080866 GATTACAATGGAGCGGATT--AA-AGGATCTTATCTCTCTGA
1 GGTTACAGTGGAGCAGATTAAAACAGGATCTTATCTCCCTGA
* * * * * *
45080905 AGTTACAGTAGAGAAGATCACATCAGG-TCTTATCTCCCTGA
1 GGTTACAGTGGAGCAGATTAAAACAGGATCTTATCTCCCTGA
* ** **
45080946 GATTACAGTGGAATAGACCAAAGA-ATTTTGGATCTTATCTCCCTGA
1 GGTTACAGTGGAGCAGATTAAA-ACA----GGATCTTATCTCCCTGA
**
45080992 GGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGA
1 GGTTACAGTGGAGCAGATT-AAAACAG-GATCTTATCTCCCTGA
* * * ** *
45081036 GATTACAGCGGAGCAGATCGAAAACACTATCCTATCTCCCTGA
1 GGTTACAGTGGAGCAGAT-TAAAACAGGATCTTATCTCCCTGA
* * * *
45081079 AGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGA
1 GGTTACAGTGGAGCAGATT-AAA-ACAGGATCTTATCTCCCTGA
45081123 GGTTACAG
1 GGTTACAG
45081131 CAGAGTAGAT
Statistics
Matches: 356, Mismatches: 93, Indels: 60
0.70 0.18 0.12
Matches are distributed among these distances:
38 1 0.00
39 47 0.13
40 4 0.01
41 59 0.17
42 11 0.03
43 33 0.09
44 131 0.37
45 10 0.03
46 57 0.16
47 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (42 bp):
GGTTACAGTGGAGCAGATTAAAACAGGATCTTATCTCCCTGA
Found at i:45081246 original size:218 final size:213
Alignment explanation
Indices: 45080805--45081246 Score: 464
Period size: 218 Copynumber: 2.0 Consensus size: 213
45080795 CAAGAATTTT
* * * *
45080805 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGTAATCCTATCTCCTTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGAACACTAATCCTATCTCCCTGAGATT
*
45080870 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
66 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAGGTCT
* * ** * * *
45080935 TATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTTGGATCTTATCTCCCTGAGGTTACAG
131 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAAATAAGGA-CGTATCTCCCTAAAGTTACAG
* ** *
45081000 TGGAGCAGATTGAAGCCAG
195 CGGAGCAGACAGAAGACAG
45081019 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAA-AACACT-ATCCTATCTCCCTGA-AG
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATC-AAGAACACTAATCCTATCTCCCTGAGA-
* * * *
45081081 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGATCGCAT
64 TTACAATGGAGCGGA-T----TAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACAT
* * * * *
45081146 CAGGTCTTATTTCCCTGAAGA-TGCAGTGGAACAGACTGAAA-ACAATAAGG-CGTGTCTCCTTA
124 CAGGTCTTATCTCCCTG-AGATTACAGTGGAACAGAC-CAAAGA-AATAAGGACGTATCTCCCTA
** * *
45081208 AAGTTGTAGCGGAGCGGACAGAAGATAG
186 AAGTTACAGCGGAGCAGACAGAAGACAG
*
45081236 TGATTCTTATC
1 AGA-TCTTATC
45081247 ATGTCTAATC
Statistics
Matches: 187, Mismatches: 30, Indels: 18
0.80 0.13 0.08
Matches are distributed among these distances:
212 1 0.01
213 28 0.15
214 40 0.21
215 2 0.01
217 29 0.16
218 77 0.41
219 10 0.05
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (213 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGAACACTAATCCTATCTCCCTGAGATT
ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAGGTCT
TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAAATAAGGACGTATCTCCCTAAAGTTACAGC
GGAGCAGACAGAAGACAG
Found at i:45084047 original size:22 final size:24
Alignment explanation
Indices: 45084004--45084047 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
45083994 TAGAAATCAT
*
45084004 AATAAAAATTAAAAGTTTGTTTGA
1 AATAAAAATGAAAAGTTTGTTTGA
45084028 AATAAAAA-GAAAA-TTTGTTT
1 AATAAAAATGAAAAGTTTGTTT
45084048 TTAGAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 4 0.21
24 8 0.42
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.36
Consensus pattern (24 bp):
AATAAAAATGAAAAGTTTGTTTGA
Found at i:45087446 original size:21 final size:21
Alignment explanation
Indices: 45087420--45087475 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
45087410 AACAGCGGTG
*
45087420 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
* *
45087441 GCGGTGAGATTGGATACTTTA
1 GCGGTGAGATTAGATACTGTA
45087462 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
45087476 AACAATGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.25, C:0.09, G:0.36, T:0.30
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:45096516 original size:22 final size:23
Alignment explanation
Indices: 45096490--45096544 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 23
45096480 AATTAATTTG
*
45096490 AATTAAATTA-AATATTTAA-AAT
1 AATT-AATTATAATAATTAACAAT
45096512 AATTAATTATAATAATTAACAAT
1 AATTAATTATAATAATTAACAAT
45096535 -A-TAATTATAA
1 AATTAATTATAA
45096545 ATTGTAAAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 14 0.47
22 13 0.43
23 3 0.10
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (23 bp):
AATTAATTATAATAATTAACAAT
Found at i:45098002 original size:6 final size:6
Alignment explanation
Indices: 45097984--45098013 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
45097974 AGTTATCAAA
45097984 TTAAAT ATTAAAT TTAAAT TTAAAT TTAAA
1 TTAAAT -TTAAAT TTAAAT TTAAAT TTAAA
45098014 GTAGAAACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
TTAAAT
Found at i:45106493 original size:11 final size:11
Alignment explanation
Indices: 45106464--45106496 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
45106454 AGCTTTAGGT
45106464 TTAGTTTTCTC
1 TTAGTTTTCTC
*
45106475 -TAGGTTTCTC
1 TTAGTTTTCTC
45106485 TTAGTTTTCTC
1 TTAGTTTTCTC
45106496 T
1 T
45106497 GCACTTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.09, C:0.18, G:0.12, T:0.61
Consensus pattern (11 bp):
TTAGTTTTCTC
Found at i:45114618 original size:27 final size:27
Alignment explanation
Indices: 45114588--45114809 Score: 279
Period size: 27 Copynumber: 8.3 Consensus size: 27
45114578 TATAATAATC
45114588 ATTTTACCCTATGGGGGTATTTCAGTT
1 ATTTTACCCTATGGGGGTATTTCAGTT
*
45114615 ATTTTACCCTATGGGGGTATTTCAGTC
1 ATTTTACCCTATGGGGGTATTTCAGTT
*
45114642 ATTTTACCCTATAGGGGTATTTCAGTT
1 ATTTTACCCTATGGGGGTATTTCAGTT
* ** *
45114669 ATTTTACCCTA-AGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTCAGTT
* * *
45114695 ATTTTACCCTATGGTGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTCAGTT
* * *
45114722 AATTTATCCTATGGGGGTATTTCGGTT
1 ATTTTACCCTATGGGGGTATTTCAGTT
* *
45114749 ATTTTACCCTAT-GAGGTATTTCAATT
1 ATTTTACCCTATGGGGGTATTTCAGTT
*
45114775 ATTTT-CTTCTATGGGGGTATTTCAGTT
1 ATTTTAC-CCTATGGGGGTATTTCAGTT
45114802 ATTTTACC
1 ATTTTACC
45114810 TATTTTAGGG
Statistics
Matches: 169, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
25 1 0.01
26 43 0.25
27 124 0.73
28 1 0.01
ACGTcount: A:0.19, C:0.15, G:0.20, T:0.45
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATTTCAGTT
Found at i:45114699 original size:80 final size:80
Alignment explanation
Indices: 45114588--45114809 Score: 284
Period size: 80 Copynumber: 2.8 Consensus size: 80
45114578 TATAATAATC
*
45114588 ATTTTACCCTATGGGGGTATTTCAGTTATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTA
1 ATTTTACCCTA-AGGGGTATTTCAGTTATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTA
45114653 TAGGGGTATTTCAGTT
65 TAGGGGTATTTCAGTT
** * * * * *
45114669 ATTTTACCCTAAGGGGTATTTTGGTCATTTTACCCTATGGTGGTATTTCGGTCAATTTATCCTAT
1 ATTTTACCCTAAGGGGTATTTCAGTTATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTAT
* *
45114734 GGGGGTATTTCGGTT
66 AGGGGTATTTCAGTT
* * * * *
45114749 ATTTTACCCTATGAGGTATTTCAATTATTTT-CTTCTATGGGGGTATTTCAGTTATTTTACC
1 ATTTTACCCTAAGGGGTATTTCAGTTATTTTAC-CCTATGGGGGTATTTCAGTCATTTTACC
45114810 TATTTTAGGG
Statistics
Matches: 118, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
79 1 0.01
80 106 0.90
81 11 0.09
ACGTcount: A:0.19, C:0.15, G:0.20, T:0.45
Consensus pattern (80 bp):
ATTTTACCCTAAGGGGTATTTCAGTTATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTAT
AGGGGTATTTCAGTT
Found at i:45114790 original size:53 final size:54
Alignment explanation
Indices: 45114586--45114809 Score: 283
Period size: 53 Copynumber: 4.2 Consensus size: 54
45114576 GGTATAATAA
45114586 TCATTTTACCCTATGGGGGTATTTCAGTTATTTTACCCTATGGGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCAGTTATTTTACCCTATGGGGGTATTTCAG
* * **
45114640 TCATTTTACCCTATAGGGGTATTTCAGTTATTTTACCCTA-AGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCAGTTATTTTACCCTATGGGGGTATTTCAG
* * * * * *
45114693 TCATTTTACCCTATGGTGGTATTTCGGTCAATTTATCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCAGTTATTTTACCCTATGGGGGTATTTCAG
* * * *
45114747 TTATTTTACCCTAT-GAGGTATTTCAATTATTTT-CTTCTATGGGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCAGTTATTTTAC-CCTATGGGGGTATTTCAG
*
45114800 TTATTTTACC
1 TCATTTTACC
45114810 TATTTTAGGG
Statistics
Matches: 147, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
53 84 0.57
54 63 0.43
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.45
Consensus pattern (54 bp):
TCATTTTACCCTATGGGGGTATTTCAGTTATTTTACCCTATGGGGGTATTTCAG
Found at i:45115529 original size:21 final size:21
Alignment explanation
Indices: 45115484--45115530 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
45115474 TAACCTTCCA
*
45115484 AAATCCCAATATTCTCTCCTC
1 AAATCCCAATATTCTCTCATC
*
45115505 AAATCCCAATATTCTCTCATT
1 AAATCCCAATATTCTCTCATC
45115526 AAATC
1 AAATC
45115531 TCTCCAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (21 bp):
AAATCCCAATATTCTCTCATC
Found at i:45117092 original size:2 final size:2
Alignment explanation
Indices: 45117087--45117123 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
45117077 TTTATATACA
45117087 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
45117124 TTATCTTGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:45123398 original size:19 final size:19
Alignment explanation
Indices: 45123369--45123411 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
45123359 AAGGGTGAGT
* *
45123369 AATTGTCATTTTGGATTAC
1 AATTATCATTTTAGATTAC
*
45123388 GATTATCATTTTAGATTAC
1 AATTATCATTTTAGATTAC
45123407 AATTA
1 AATTA
45123412 AATACTAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.47
Consensus pattern (19 bp):
AATTATCATTTTAGATTAC
Found at i:45125372 original size:23 final size:23
Alignment explanation
Indices: 45125324--45125373 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
45125314 TTTTATGCGC
* * *
45125324 GCAAATGAAAGTGGCACTTTGGT
1 GCAAATAAAAGTGGCACTTCGAT
45125347 GCAAATAAAAGTGGCACTTCGAT
1 GCAAATAAAAGTGGCACTTCGAT
45125370 GCAA
1 GCAA
45125374 TGCAATGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (23 bp):
GCAAATAAAAGTGGCACTTCGAT
Found at i:45132296 original size:41 final size:41
Alignment explanation
Indices: 45132251--45132447 Score: 286
Period size: 41 Copynumber: 4.8 Consensus size: 41
45132241 CCGGCTTTTG
* *
45132251 GCCTGCTAGACTTAAAGTCTGAAATGTTTCACTAGCATCAA
1 GCCTGCTAGACATAAAGTCTGAATTGTTTCACTAGCATCAA
*
45132292 GCCTGCTAGACATAAAGTCTGAATTGTTTCACTGGCATCAA
1 GCCTGCTAGACATAAAGTCTGAATTGTTTCACTAGCATCAA
* *
45132333 GCCTGCTGGACATAAAGTCTGAATTGTTTCACTAGCATCCA
1 GCCTGCTAGACATAAAGTCTGAATTGTTTCACTAGCATCAA
* * ** *
45132374 GCCTTCTAGACATAGAGTCTGAATTGTTTCACCGGCATCCA
1 GCCTGCTAGACATAAAGTCTGAATTGTTTCACTAGCATCAA
* *
45132415 GCCTGCTAGACATAGAGTCTGAATTGTCTCACT
1 GCCTGCTAGACATAAAGTCTGAATTGTTTCACT
45132448 GGCAATAAGC
Statistics
Matches: 142, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 142 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (41 bp):
GCCTGCTAGACATAAAGTCTGAATTGTTTCACTAGCATCAA
Found at i:45135604 original size:34 final size:34
Alignment explanation
Indices: 45135558--45135646 Score: 103
Period size: 34 Copynumber: 2.6 Consensus size: 34
45135548 ACAAATAATC
* *
45135558 TTAGTTTGGGCCTAAGCCC-TTTTAATTATCAGTA
1 TTAGTTTAGGCCTAAGCCCATTTT-AGTATCAGTA
45135592 TTAGTTTAGGCCTAAGCCCATTTTAGTATCAGTA
1 TTAGTTTAGGCCTAAGCCCATTTTAGTATCAGTA
*
45135626 --AGTATTAGGGCCTTAGCCCAT
1 TTAGT-TTA-GGCCTAAGCCCAT
45135647 CATAGTACGG
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
32 3 0.06
33 3 0.06
34 39 0.80
35 4 0.08
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (34 bp):
TTAGTTTAGGCCTAAGCCCATTTTAGTATCAGTA
Found at i:45138358 original size:15 final size:15
Alignment explanation
Indices: 45138324--45138359 Score: 56
Period size: 14 Copynumber: 2.4 Consensus size: 15
45138314 TTACTCACTG
45138324 CACATAAGAAAAACAA
1 CACA-AAGAAAAACAA
45138340 -ACAAAGAAAAACAA
1 CACAAAGAAAAACAA
45138354 CACAAA
1 CACAAA
45138360 TACACCAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.72, C:0.19, G:0.06, T:0.03
Consensus pattern (15 bp):
CACAAAGAAAAACAA
Found at i:45144036 original size:15 final size:16
Alignment explanation
Indices: 45143998--45144037 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
45143988 GGCTTTTGTG
45143998 ATATATGTGATGATTT
1 ATATATGTGATGATTT
* *
45144014 AAACATGTGA-GATTT
1 ATATATGTGATGATTT
45144029 ATATATGTG
1 ATATATGTG
45144038 TATGTTAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.35, C:0.03, G:0.20, T:0.42
Consensus pattern (16 bp):
ATATATGTGATGATTT
Found at i:45157785 original size:433 final size:432
Alignment explanation
Indices: 45156928--45157790 Score: 1433
Period size: 433 Copynumber: 2.0 Consensus size: 432
45156918 AATGAATTGC
* *
45156928 AAATTTGAATTGATTTAAAAAAACCAAATTTTGTTGTATATTTTCTGTTTTTTCTAAAAAAAATG
1 AAATTTGAATTGATTTAAAAAAACAAAATTTTGTTGTATATTTTCTGTTTTTTCTAAAAAAAATA
* * * *
45156993 GCATTAGAGTTGATTTCACAAGCCTCTATAATATTTGTTTTGGATGTTCTTCAGAGGCATAGAAC
66 GCATTAGAGTCGATTTCACAAGCCCCTATAATATTAGTTTTGAATGTTCTTCAGAGGCATAGAAC
* *
45157058 TTGACTTAAAGATATTACTAATTTGATTTCAAGAAACATTGAGGAAGCGTATAATGATTTAACCT
131 TTGACTTAAAGATATTACTAATTTGATTTCAAGAAACATTGAGGAAACATATAATGATTTAACCT
*
45157123 TCTTCTTTTTTGTTTTGTTTTTAGTTTGTTATTAAATTCTATTGAATGATAATTTTCTTTTTTTC
196 TCTTCTTTTTTGTTTTGTTTTTAGTTTGTTATTAAATTCTATTGAATGATAATTTTCTTTTTCTC
* *
45157188 TTTTTATGCATATTAGTTCTTCAACAACATTGTTTTGTGTCTCTGTTATCCATGGTTAAAACCAT
261 TTTTTATACATATTAGTTCTTCAACAACATTGTTTGGTGTCTCTGTTATCCATGGTTAAAACCAT
** * * *
45157253 ACATGCAAAATAAACTACAATCATGTTCAAAACCTTGCATATACTTAAGTTTTTCTTTAACCCAC
326 ACACCCAAAATAAACTACAAACACGTTCAAAACCTTGCATATACTTAAGTTTCTCTTTAACCCAC
45157318 CATTATCATCAATGACATAATATTCAAGTTTTTTTTGAATTAA
391 CATTATCATCAATGACATAATATTCAAGTTTTTTTT-AATTAA
* *
45157361 AAATTTGAATTGATTTAAAAAAATAAAATTTTGTTGTATATTTTGTGTTTTTTCTAAAAAAAATA
1 AAATTTGAATTGATTTAAAAAAACAAAATTTTGTTGTATATTTTCTGTTTTTTCTAAAAAAAATA
* *
45157426 GTATTAGAGTCGATTTCACAAGCCCCTATGATATTAGTTTTGAATGTTCTTCAGAGGCATAGAAC
66 GCATTAGAGTCGATTTCACAAGCCCCTATAATATTAGTTTTGAATGTTCTTCAGAGGCATAGAAC
*
45157491 TTGACTTAAAGATATTACTAATTTGGTTTCAAGAAACATTGAGGAAACATATAATGATTTAACCT
131 TTGACTTAAAGATATTACTAATTTGATTTCAAGAAACATTGAGGAAACATATAATGATTTAACCT
45157556 CTCTT-TTTTTTGTTTTGTTTTTAGTTTGTTATTAAATTCTATTGAATGATAATTTTCTTTTTCT
196 -TCTTCTTTTTTGTTTTGTTTTTAGTTTGTTATTAAATTCTATTGAATGATAATTTTCTTTTTCT
* *
45157620 -TTTTTATACATATTATTTCTTTAACAACATTGTTTGGTGTCTCTGTTATCCATGGTTAAAACCA
260 CTTTTTATACATATTAGTTCTTCAACAACATTGTTTGGTGTCTCTGTTATCCATGGTTAAAACCA
* *
45157684 TACACCCAAAATAAATTACAAACACGTTCAAAACCTTGCATATACTTAAGTTTCTCTTTGACCCA
325 TACACCCAAAATAAACTACAAACACGTTCAAAACCTTGCATATACTTAAGTTTCTCTTTAACCCA
** *
45157749 CTGTTGTCATCAATGACATAATATTCAAGTTTTTTTTTAATT
390 CCATTATCATCAATGACATAATATTCAAG-TTTTTTTTAATT
45157791 TTTTTATAAT
Statistics
Matches: 400, Mismatches: 28, Indels: 5
0.92 0.06 0.01
Matches are distributed among these distances:
432 148 0.37
433 248 0.62
434 4 0.01
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (432 bp):
AAATTTGAATTGATTTAAAAAAACAAAATTTTGTTGTATATTTTCTGTTTTTTCTAAAAAAAATA
GCATTAGAGTCGATTTCACAAGCCCCTATAATATTAGTTTTGAATGTTCTTCAGAGGCATAGAAC
TTGACTTAAAGATATTACTAATTTGATTTCAAGAAACATTGAGGAAACATATAATGATTTAACCT
TCTTCTTTTTTGTTTTGTTTTTAGTTTGTTATTAAATTCTATTGAATGATAATTTTCTTTTTCTC
TTTTTATACATATTAGTTCTTCAACAACATTGTTTGGTGTCTCTGTTATCCATGGTTAAAACCAT
ACACCCAAAATAAACTACAAACACGTTCAAAACCTTGCATATACTTAAGTTTCTCTTTAACCCAC
CATTATCATCAATGACATAATATTCAAGTTTTTTTTAATTAA
Found at i:45158000 original size:118 final size:118
Alignment explanation
Indices: 45157792--45158017 Score: 416
Period size: 118 Copynumber: 1.9 Consensus size: 118
45157782 TTTTTAATTT
*
45157792 TTTTATAATTGAGTTGATGATTTCTGATTTGATTTTAATATTCTTATTTTCTTAGATAAATATTG
1 TTTTATAATTGACTTGATGATTTCTGATTTGATTTTAATATTCTTATTTTCTTAGATAAATATTG
*
45157857 AAATATATTTGAAATTTTCAAGATTTTATTTTTCTAGAATTTTGATATAGAAA
66 AAATATATTTGAAATTTTCAAGATTTTATTTTTCAAGAATTTTGATATAGAAA
*
45157910 TTTTATAATTGACTTGATGATTTCTGATTTGATTTTAATATTTTTATTTTCTTAGATAAATATTG
1 TTTTATAATTGACTTGATGATTTCTGATTTGATTTTAATATTCTTATTTTCTTAGATAAATATTG
*
45157975 AAATATATTTGGAATTTTCAAGATTTTATTTTTCAAGAATTTT
66 AAATATATTTGAAATTTTCAAGATTTTATTTTTCAAGAATTTT
45158018 CTATTTTTAA
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
118 104 1.00
ACGTcount: A:0.32, C:0.04, G:0.11, T:0.53
Consensus pattern (118 bp):
TTTTATAATTGACTTGATGATTTCTGATTTGATTTTAATATTCTTATTTTCTTAGATAAATATTG
AAATATATTTGAAATTTTCAAGATTTTATTTTTCAAGAATTTTGATATAGAAA
Found at i:45158019 original size:58 final size:57
Alignment explanation
Indices: 45157837--45158019 Score: 135
Period size: 58 Copynumber: 3.1 Consensus size: 57
45157827 TAATATTCTT
*
45157837 ATTTTCTTAGATAAATATTGAAATATATTTGAAATTTTCAAGATTTTATTTTTCTAGA
1 ATTTTCTTAGATAAATATTGAAATATATTTGGAATTTTCAAGATTTTATTTTTC-AGA
** * * * * * *
45157895 ATTTTGATATAGAAAT-TTTATAAT-TGACTT-GATGATTTCTGATTTGATTTTAATATTTT---
1 ATTTTCTTAGATAAATATTGA-AATAT-ATTTGGA--ATTT-TCA--AGATTTT-AT-TTTTCAG
*
45157954 T
57 A
45157955 ATTTTCTTAGATAAATATTGAAATATATTTGGAATTTTCAAGATTTTATTTTTCAAGA
1 ATTTTCTTAGATAAATATTGAAATATATTTGGAATTTTCAAGATTTTATTTTTC-AGA
45158013 ATTTTCT
1 ATTTTCT
45158020 ATTTTTAAAT
Statistics
Matches: 90, Mismatches: 19, Indels: 32
0.64 0.13 0.23
Matches are distributed among these distances:
54 4 0.04
55 2 0.02
56 6 0.07
57 5 0.06
58 27 0.30
59 8 0.09
60 20 0.22
61 6 0.07
62 6 0.07
63 2 0.02
64 4 0.04
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.52
Consensus pattern (57 bp):
ATTTTCTTAGATAAATATTGAAATATATTTGGAATTTTCAAGATTTTATTTTTCAGA
Found at i:45158212 original size:82 final size:83
Alignment explanation
Indices: 45158109--45158275 Score: 277
Period size: 83 Copynumber: 2.0 Consensus size: 83
45158099 AAATTGTTAC
* *
45158109 TATACCAACTAAAAAAGTGCCACTTAACAGTC-CAGTGAC-AAAAAAA-TTTAGAAAAGTTTAGT
1 TATACCAACAAAAAAACTGCCACTTAACAG-CACAGTGACAAAAAAAATTTTA-AAAAGTTTAGT
45158171 GATCAAATTCTAACTTTTTT
64 GATCAAATTCTAACTTTTTT
45158191 TATACCAACAAAAAAACTGCCACTTAACAGCACAGTGACAAAAAAAATTTTAAAAAGTTTAGTGA
1 TATACCAACAAAAAAACTGCCACTTAACAGCACAGTGACAAAAAAAATTTTAAAAAGTTTAGTGA
45158256 TCAAATTCTAACTTTTTT
66 TCAAATTCTAACTTTTTT
45158274 TA
1 TA
45158276 GTGAAGTGAC
Statistics
Matches: 80, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
81 1 0.01
82 35 0.44
83 40 0.50
84 4 0.05
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.30
Consensus pattern (83 bp):
TATACCAACAAAAAAACTGCCACTTAACAGCACAGTGACAAAAAAAATTTTAAAAAGTTTAGTGA
TCAAATTCTAACTTTTTT
Found at i:45166987 original size:20 final size:22
Alignment explanation
Indices: 45166947--45167000 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
45166937 AATAGTTGTA
*
45166947 GTGACATTCTTACCTAATATAT
1 GTGACATGCTTACCTAATATAT
45166969 GTGACATGCTT-CC-AATATAT
1 GTGACATGCTTACCTAATATAT
45166989 GCATGACATGCT
1 G--TGACATGCT
45167001 ACGGAAGTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 8 0.28
21 2 0.07
22 19 0.66
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (22 bp):
GTGACATGCTTACCTAATATAT
Found at i:45171669 original size:25 final size:25
Alignment explanation
Indices: 45171640--45171712 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 25
45171630 CACGCTCTCG
*
45171640 AGCCAAATAACGGGAAGCTCATGTC
1 AGCCAAATAACAGGAAGCTCATGTC
** * * *
45171665 AGCCATGTAACAGGAAGCTTATCTG
1 AGCCAAATAACAGGAAGCTCATGTC
* *
45171690 GGCTAAATAACAGGAAGCTCATG
1 AGCCAAATAACAGGAAGCTCATG
45171713 AGAGCCATAA
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.19
Consensus pattern (25 bp):
AGCCAAATAACAGGAAGCTCATGTC
Found at i:45184841 original size:44 final size:44
Alignment explanation
Indices: 45184792--45185506 Score: 221
Period size: 44 Copynumber: 16.2 Consensus size: 44
45184782 AAGGTTGAAG
* *
45184792 ATCTTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
* ** *
45184836 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTG-AG-CCACCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGA-TTGAAGACGGCGA
* * * * ** * *
45184879 AGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGA-GTG-TA
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACG-GCGA
* *
45184923 GATCTTATCTCCCTAAAGCAGTAGTAGAGCAGATCGAAGACGGCGA
1 -ATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATTGAAGACGGCGA
* * ** *
45184969 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCGA
* * * * * * *
45185012 AGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGA-GTG-AA
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACG-GCGA
*
45185056 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
* * ** *
45185101 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCGA
* * * * * ** *
45185144 AGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTG-TA
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
* * *
45185188 GATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGTGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
* ** *
45185233 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTG-AG-CCACCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGA-TTGAAGACGGCGA
* * * ** * *
45185276 AGCCTTGTCTCCCTGAGCA-TCAGTGGAAAAGGTTGAAGA-GTG-TA
1 A-TCTTATCTCCCTAAGCAGT-AGTGGAGCAGATTGAAGACG-GCGA
* * * *
45185320 GATCTTATCTCCCTAAAGCAGTAGTGGAGCAGATCGAAAATGACGA
1 -ATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATTGAAGACGGCGA
** * ** *
45185366 ATCTTATCTTTCTAAG-A-TAGTAGGAAGCAGATTTAAG-CCACCA
1 ATCTTATCTCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCGA
* * * * *****
45185409 AGCCTTATCTCCCTAAGCAGTAGCGGAGAAGGTTGAAG-TTTATA
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
* * * *
45185453 GATCTTATCTCCCTGAGTAGTAGTGGAGCAGATCGAAGACGGCAA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
45185498 ATCTTATCT
1 ATCTTATCT
45185507 TTCCAAGATA
Statistics
Matches: 472, Mismatches: 139, Indels: 120
0.65 0.19 0.16
Matches are distributed among these distances:
42 19 0.04
43 50 0.11
44 286 0.61
45 93 0.20
46 24 0.05
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
Found at i:45185136 original size:132 final size:132
Alignment explanation
Indices: 45184749--45185533 Score: 1208
Period size: 132 Copynumber: 6.0 Consensus size: 132
45184739 ACCGGTGAAA
* *
45184749 CACCAAGCATTGTCTCCCTGAGCAGTAGTGGAGAAGG-T------TGAAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCTAA
* *
45184807 GCAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
45184872 GC
131 GC
* *
45184874 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCT-A
*
45184939 AGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
65 AGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
45185004 AGC
130 AGC
45185007 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCTAA
45185072 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
45185137 GC
131 GC
* * *
45185139 CACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCTAA
* * *
45185204 GCAGTAGTAGAGCAGATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
45185269 GC
131 GC
* * *
45185271 CACCAAGCCTTGTCTCCCTGAGCATCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCT-A
* * * * *
45185336 AGCAGTAGTGGAGCAGATCGAAAATGACGAATCTTATCTTTCTAAGATAGTAGGAAGCAGATTTA
65 AGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
45185401 AGC
130 AGC
* * * * * * *
45185404 CACCAAGCCTTATCTCCCTAAGCAGTAGCGGAGAAGGTTGAAG-TTTATAGATCTTATCTCCCTG
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGA-AGATCTTATCTCCCTA
* * *
45185468 AGTAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTA
65 AGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
45185533 A
130 A
45185534 TTCACCAAAT
Statistics
Matches: 604, Mismatches: 46, Indels: 13
0.91 0.07 0.02
Matches are distributed among these distances:
125 34 0.06
126 1 0.00
132 329 0.54
133 240 0.40
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.25
Consensus pattern (132 bp):
CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCTAA
GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
GC
Found at i:45185341 original size:265 final size:264
Alignment explanation
Indices: 45184749--45185533 Score: 1251
Period size: 265 Copynumber: 3.0 Consensus size: 264
45184739 ACCGGTGAAA
* * *
45184749 CACCAAGCATTGTCTCCCTGAGCAGTAGTGGAGAAGG-T------TGAAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGAAGATCTTATCTCCCTAA
* *
45184807 GCAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
* * *
45184872 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCCCT
131 GCCACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCT
45184937 AAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATT
196 -AAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATT
45185002 TAAGC
260 TAAGC
*
45185007 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGAAGATCTTATCTCCCTAA
45185072 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
45185137 GCCACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCT
131 GCCACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCT
*
45185202 AAGCAGTAGTAGAGCAGATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTT
196 AAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTT
*
45185267 GAGC
261 AAGC
* *
45185271 CACCAAGCCTTGTCTCCCTGAGCATCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGAAGATCTTATCTCCCT-A
* * * * *
45185336 AGCAGTAGTGGAGCAGATCGAAAATGACGAATCTTATCTTTCTAAGATAGTAGGAAGCAGATTTA
65 AGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
* * * * *
45185401 AGCCACCAAGCCTTATCTCCCTAAGCAGTAGCGGAGAAGGTTGAAGTTTATAGATCTTATCTCCC
130 AGCCACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCC
* * * * *
45185466 TGAGTAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATT
195 TAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATT
45185531 TAA
260 TAA
45185534 TTCACCAAAT
Statistics
Matches: 490, Mismatches: 29, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
258 35 0.07
259 1 0.00
264 127 0.26
265 327 0.67
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.25
Consensus pattern (264 bp):
CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGAAGATCTTATCTCCCTAA
GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
GCCACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCT
AAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTT
AAGC
Found at i:45185523 original size:397 final size:390
Alignment explanation
Indices: 45184749--45185533 Score: 1302
Period size: 397 Copynumber: 2.0 Consensus size: 390
45184739 ACCGGTGAAA
45184749 CACCAAGCATTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATCTTATCTCCCTAAGCAGCAG
1 CACCAAGCATTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATCTTATCTCCCTAAGCAGCAG
*
45184814 TGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGAGCCACCA
66 TAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGAGCCACCA
45184879 AGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCCCTAAAGCAG
131 AGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCCCTAAAGCAG
* * *
45184944 TAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
196 TAGTAGAGCAGATCGAAAACGACGAATCTTATCTTTCCAAGATAGTAGGAAGCAGATTTAAGCCA
* * *
45185009 CCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCTAAGC
261 CCAAGCCTTATCTCCCTAAGCAGCAGCGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCTAAGC
*
45185074 AGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
326 AGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
*
45185139 CACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCATTGTCTCCCTGAGCAGTAGTGGAGAAGGTT---GA----AGATCTTATCTCCCTAA
* *
45185204 GCAGTAGTAGAGCAGATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGA
59 GCAGCAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGA
*
45185269 GCCACCAAGCCTTGTCTCCCTGAGCATCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCCCT
124 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCCCT
* * *
45185334 AAAGCAGTAGTGGAGCAGATCGAAAATGACGAATCTTATCTTTCTAAGATAGTAGGAAGCAGATT
189 AAAGCAGTAGTAGAGCAGATCGAAAACGACGAATCTTATCTTTCCAAGATAGTAGGAAGCAGATT
* * *
45185399 TAAGCCACCAAGCCTTATCTCCCTAAGCAGTAGCGGAGAAGGTTGAAG-TTTATAGATCTTATCT
254 TAAGCCACCAAGCCTTATCTCCCTAAGCAGCAGCGGAGAAGGTTGAAGAGTGA-AGATCTTATCT
* * *
45185463 CCCTGAGTAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGTAG
318 CCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAG
45185528 ATTTAA
383 ATTTAA
45185534 TTCACCAAAT
Statistics
Matches: 366, Mismatches: 21, Indels: 9
0.92 0.05 0.02
Matches are distributed among these distances:
390 38 0.10
393 2 0.01
396 2 0.01
397 324 0.89
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.25
Consensus pattern (390 bp):
CACCAAGCATTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATCTTATCTCCCTAAGCAGCAG
TAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGAGCCACCA
AGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCCCTAAAGCAG
TAGTAGAGCAGATCGAAAACGACGAATCTTATCTTTCCAAGATAGTAGGAAGCAGATTTAAGCCA
CCAAGCCTTATCTCCCTAAGCAGCAGCGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCTAAGC
AGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
Found at i:45187468 original size:14 final size:13
Alignment explanation
Indices: 45187435--45187469 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
45187425 GATTATTGTT
*
45187435 TTTATTTCGTTTA
1 TTTATTTTGTTTA
45187448 TTTATTTTGTTTA
1 TTTATTTTGTTTA
45187461 TATTATTTT
1 T-TTATTTT
45187470 TTATGCCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 13 0.65
14 7 0.35
ACGTcount: A:0.17, C:0.03, G:0.06, T:0.74
Consensus pattern (13 bp):
TTTATTTTGTTTA
Found at i:45190993 original size:161 final size:154
Alignment explanation
Indices: 45190713--45191225 Score: 423
Period size: 155 Copynumber: 3.3 Consensus size: 154
45190703 AAATGTATAA
* * *
45190713 TTCATGTTGGACATGTTTAGAATGGA-ATTTATCTTGAAAATGAGCTTAATTTGGTTATTGTTAA
1 TTCATGTTGGACATGTTTAGAATGGATA-TGATCTTGAAAATGAGCTTACTTTGGTTATTGTCAA
* *
45190777 ATGTCAGTCATTTTGGTAACCGGATGATAACCCTTTTTGTAATTACTTATAAAGAAGAAACTAGA
65 ATGTCAGTCA-TTTGGTAACCAGATGATAACCCTATTTGTAATTACTTAT--A-AAG--A--AGA
**
45190842 GTTTTAAGGTTAGTGGGT-AATATGAAGTAAAT
122 GTTTTAAGGCCAGTGGGTGAATATGAAGTAAAT
* * *
45190874 TTCATGTTGGACATGATTAGAATGGATATGATCTCGAAAATGGGCTTACTTTGGTTATTGTCAAA
1 TTCATGTTGGACATGTTTAGAATGGATATGATCTTGAAAATGAGCTTACTTTGGTTATTGTCAAA
* ** * *
45190939 TGTCAGTCATTTGAGTAACCAGATGA-CA-CCTGGATTTGTGGTTGCTTGTAAAGAAGAGTTTTA
66 TGTCAGTCATTTG-GTAACCAGATGATAACCCT--ATTTGTAATTACTTATAAAGAAGAGTTTTA
* * *
45191002 AGGCCAGTGGGTGATTTTTAAGTAAAT
128 AGGCCAGTGGGTGAATATGAAGTAAAT
** * * *
45191029 TTCATGTTGGACATGTTTACTACGGATATGATCTTGAAAACGAG-TCTACTTTGGTTATCGTCAA
1 TTCATGTTGGACATGTTTAGAATGGATATGATCTTGAAAATGAGCT-TACTTTGGTTATTGTCAA
* * * * * ** *
45191093 ATTTCAGTTATTTGGGTAACCTGACGAT-A-TCTAATTTTGTGGTTACGTATAAAGAAGTGGAAG
65 ATGTCAGTCATTT-GGTAACCAGATGATAACCCT-A-TTTGTAATTACTTATAAAGAA---G-AG
* * * *
45191156 TTTTAATGTCAATGGGTG-ATATAAAGTAAAT
123 TTTTAAGGCCAGTGGGTGAATATGAAGTAAAT
* * * *
45191187 TTTATGTTGGCCATAG-TTAGAATGGACATCATCTTGAAA
1 TTCATGTTGGACAT-GTTTAGAATGGATATGATCTTGAAA
45191226 CACATTATAA
Statistics
Matches: 290, Mismatches: 48, Indels: 31
0.79 0.13 0.08
Matches are distributed among these distances:
154 21 0.07
155 107 0.37
156 2 0.01
158 44 0.15
159 22 0.08
160 5 0.02
161 88 0.30
162 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (154 bp):
TTCATGTTGGACATGTTTAGAATGGATATGATCTTGAAAATGAGCTTACTTTGGTTATTGTCAAA
TGTCAGTCATTTGGTAACCAGATGATAACCCTATTTGTAATTACTTATAAAGAAGAGTTTTAAGG
CCAGTGGGTGAATATGAAGTAAAT
Found at i:45198740 original size:21 final size:21
Alignment explanation
Indices: 45198714--45198816 Score: 134
Period size: 21 Copynumber: 4.9 Consensus size: 21
45198704 GACGTTGCTA
*
45198714 TGCTTCCCTTGCTGCAGCCTC
1 TGCTTCCCTCGCTGCAGCCTC
**
45198735 TGCTTCCCTCGCTTTAGCCTC
1 TGCTTCCCTCGCTGCAGCCTC
*
45198756 TGCTTCCCTCGCTGCAGCCTG
1 TGCTTCCCTCGCTGCAGCCTC
* * **
45198777 TACTTCCCTCACTATAGCCTC
1 TGCTTCCCTCGCTGCAGCCTC
45198798 TGCTTCCCTCGCTGCAGCC
1 TGCTTCCCTCGCTGCAGCC
45198817 GGTACTTAAT
Statistics
Matches: 67, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 67 1.00
ACGTcount: A:0.08, C:0.44, G:0.17, T:0.32
Consensus pattern (21 bp):
TGCTTCCCTCGCTGCAGCCTC
Found at i:45198822 original size:42 final size:42
Alignment explanation
Indices: 45198714--45198823 Score: 166
Period size: 42 Copynumber: 2.6 Consensus size: 42
45198704 GACGTTGCTA
* * * * *
45198714 TGCTTCCCTTGCTGCAGCCTCTGCTTCCCTCGCTTTAGCCTC
1 TGCTTCCCTCGCTGCAGCCTGTACTTCCCTCACTATAGCCTC
45198756 TGCTTCCCTCGCTGCAGCCTGTACTTCCCTCACTATAGCCTC
1 TGCTTCCCTCGCTGCAGCCTGTACTTCCCTCACTATAGCCTC
*
45198798 TGCTTCCCTCGCTGCAGCCGGTACTT
1 TGCTTCCCTCGCTGCAGCCTGTACTT
45198824 AATTAGTTGC
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.08, C:0.42, G:0.17, T:0.33
Consensus pattern (42 bp):
TGCTTCCCTCGCTGCAGCCTGTACTTCCCTCACTATAGCCTC
Found at i:45204000 original size:16 final size:16
Alignment explanation
Indices: 45203979--45204022 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
45203969 ACTAAGCTAC
45203979 GTAAGTTATGTATTAT
1 GTAAGTTATGTATTAT
*
45203995 GTAAGTTATTTATTAT
1 GTAAGTTATGTATTAT
* *
45204011 GAAAATTATGTA
1 GTAAGTTATGTA
45204023 AGTTGTGTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (16 bp):
GTAAGTTATGTATTAT
Found at i:45204041 original size:25 final size:25
Alignment explanation
Indices: 45203990--45204062 Score: 74
Period size: 25 Copynumber: 2.7 Consensus size: 25
45203980 TAAGTTATGT
*
45203990 ATTATGTAAGTTATTTATTATGAAA
1 ATTATGTAAGTTATGTATTATGAAA
* *
45204015 ATTATGTAAGTTGTGTATTAGTCAAA
1 ATTATGTAAGTTATGTATTA-TGAAA
45204041 TTATGCTATGTAAGTTATGTAT
1 --AT--TATGTAAGTTATGTAT
45204063 GTCGTATAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
25 18 0.46
26 4 0.10
28 2 0.05
30 15 0.38
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (25 bp):
ATTATGTAAGTTATGTATTATGAAA
Found at i:45204059 original size:9 final size:9
Alignment explanation
Indices: 45204047--45204685 Score: 251
Period size: 9 Copynumber: 75.3 Consensus size: 9
45204037 CAAATTATGC
45204047 TATGTAAGT
1 TATGTAAGT
*
45204056 TATGTATGT
1 TATGTAAGT
** *
45204065 CGTATAAGT
1 TATGTAAGT
45204074 TATGTAAG-
1 TATGTAAGT
45204082 T-TGTAAGT
1 TATGTAAGT
45204090 TATGTAAGT
1 TATGTAAGT
*
45204099 TAT-TTA-T
1 TATGTAAGT
* *
45204106 TATGAAAAT
1 TATGTAAGT
*
45204115 TAAGTAAGT
1 TATGTAAGT
*
45204124 TATGTAATT
1 TATGTAAGT
*
45204133 TACG-AA-T
1 TATGTAAGT
* **
45204140 AAT-TAAAA
1 TATGTAAGT
*
45204148 AATTGTAAGT
1 TA-TGTAAGT
45204158 TATGTAAG-
1 TATGTAAGT
45204166 T-TGTAAGT
1 TATGTAAGT
45204174 TATGTAAG-
1 TATGTAAGT
45204182 T-TGTAAGT
1 TATGTAAGT
45204190 TATGTAAG-
1 TATGTAAGT
45204198 T-TGTAAGT
1 TATGTAAGT
45204206 TATGTAAG-
1 TATGTAAGT
45204214 T-TGTAAGT
1 TATGTAAGT
45204222 TATGTAAG-
1 TATGTAAGT
45204230 T-TGTAAGT
1 TATGTAAGT
45204238 TATGTAAG-
1 TATGTAAGT
45204246 T-TGTAAGT
1 TATGTAAGT
45204254 TATGTAAG-
1 TATGTAAGT
45204262 T-TGTAAGT
1 TATGTAAGT
45204270 TATGTAAG-
1 TATGTAAGT
45204278 T-TGTAAGT
1 TATGTAAGT
45204286 TATGTAAGT
1 TATGTAAGT
*
45204295 TAT-TTA-T
1 TATGTAAGT
* *
45204302 TATGAAAAT
1 TATGTAAGT
*
45204311 TAAGTAAGT
1 TATGTAAGT
*
45204320 TATGTAATT
1 TATGTAAGT
*
45204329 TACG-AA-T
1 TATGTAAGT
* **
45204336 AAT-TAAAA
1 TATGTAAGT
*
45204344 AATTGTAAGT
1 TA-TGTAAGT
45204354 TATGTAAG-
1 TATGTAAGT
45204362 T-TGTAAGT
1 TATGTAAGT
45204370 TATGTAAG-
1 TATGTAAGT
*
45204378 T-TGTAAAT
1 TATGTAAGT
*
45204386 TATGTATA-A
1 TATGTA-AGT
45204395 TAT-TAA-T
1 TATGTAAGT
**
45204402 TAACTAAGT
1 TATGTAAGT
*
45204411 TATGTAATT
1 TATGTAAGT
*
45204420 TATGTATAATAT
1 TATG--TAA-GT
45204432 TAAT-TAA-T
1 T-ATGTAAGT
45204440 TAAT-TAAGT
1 T-ATGTAAGT
*
45204449 TATGTAATT
1 TATGTAAGT
45204458 TATGT-A--
1 TATGTAAGT
*
45204464 TAT-TAACT
1 TATGTAAGT
*
45204472 AAT-TAAGT
1 TATGTAAGT
*
45204480 TATGTAATT
1 TATGTAAGT
45204489 TATG-AA-T
1 TATGTAAGT
* **
45204496 AAT-TAAAAA
1 TATGT-AAGT
*
45204505 AATGTAAGT
1 TATGTAAGT
45204514 TATGTAAG-
1 TATGTAAGT
45204522 T-TGTAAG-
1 TATGTAAGT
45204529 T-TGTAAGT
1 TATGTAAGT
45204537 TATGTAAG-
1 TATGTAAGT
45204545 T-TGTAAGT
1 TATGTAAGT
*
45204553 TATGTATA-A
1 TATGTA-AGT
45204562 TAT-TAA-T
1 TATGTAAGT
**
45204569 TAACTAAGT
1 TATGTAAGT
*
45204578 TATGTAATT
1 TATGTAAGT
*
45204587 TATGTATCATAT
1 TATGTA--A-GT
45204599 TAATGTAAGT
1 T-ATGTAAGT
**
45204609 TATGTAACA
1 TATGTAAGT
*
45204618 TATGTATA-A
1 TATGTA-AGT
45204627 TAT-TAA-T
1 TATGTAAGT
**
45204634 TAACTAAGT
1 TATGTAAGT
*
45204643 TATGTAATT
1 TATGTAAGT
*
45204652 TATGTATCATAT
1 TATGTA--A-GT
45204664 TAATGTAAGT
1 T-ATGTAAGT
45204674 TATGTAAGT
1 TATGTAAGT
45204683 TAT
1 TAT
45204686 TTATATTAAT
Statistics
Matches: 488, Mismatches: 73, Indels: 138
0.70 0.10 0.20
Matches are distributed among these distances:
5 1 0.00
6 4 0.01
7 112 0.23
8 78 0.16
9 249 0.51
10 19 0.04
11 7 0.01
12 6 0.01
13 12 0.02
ACGTcount: A:0.38, C:0.02, G:0.16, T:0.44
Consensus pattern (9 bp):
TATGTAAGT
Found at i:45204090 original size:16 final size:16
Alignment explanation
Indices: 45204049--45204391 Score: 329
Period size: 16 Copynumber: 20.8 Consensus size: 16
45204039 AATTATGCTA
*
45204049 TGTAAGTTATGTATGT
1 TGTAAGTTATGTAAGT
*
45204065 CGTATAAGTTATGTAAGT
1 --TGTAAGTTATGTAAGT
45204083 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
* * * *
45204099 TATTTA-TTATGAAAAT
1 T-GTAAGTTATGTAAGT
*
45204115 TAAGTAAGTTATGTAATT
1 T--GTAAGTTATGTAAGT
** *
45204133 TACGAATAA-TTA-AAAAAT
1 T--G--TAAGTTATGTAAGT
45204151 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
45204167 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
45204183 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
45204199 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
45204215 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
45204231 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
45204247 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
45204263 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
45204279 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
* * * *
45204295 TATTTA-TTATGAAAAT
1 T-GTAAGTTATGTAAGT
*
45204311 TAAGTAAGTTATGTAATT
1 T--GTAAGTTATGTAAGT
** *
45204329 TACGAATAA-TTA-AAAAAT
1 T--G--TAAGTTATGTAAGT
45204347 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
45204363 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
*
45204379 TGTAAATTATGTA
1 TGTAAGTTATGTA
45204392 TAATATTAAT
Statistics
Matches: 277, Mismatches: 34, Indels: 30
0.81 0.10 0.09
Matches are distributed among these distances:
14 6 0.02
15 6 0.02
16 199 0.72
17 10 0.04
18 44 0.16
19 6 0.02
20 6 0.02
ACGTcount: A:0.36, C:0.01, G:0.20, T:0.43
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:45204528 original size:7 final size:7
Alignment explanation
Indices: 45204516--45204553 Score: 58
Period size: 7 Copynumber: 5.1 Consensus size: 7
45204506 ATGTAAGTTA
45204516 TGTAAGT
1 TGTAAGT
45204523 TGTAAGT
1 TGTAAGT
45204530 TGTAAGTT
1 TGTAAG-T
45204538 ATGTAAGT
1 -TGTAAGT
45204546 TGTAAGT
1 TGTAAGT
45204553 T
1 T
45204554 ATGTATAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 21 0.72
8 2 0.07
9 6 0.21
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.45
Consensus pattern (7 bp):
TGTAAGT
Found at i:45204528 original size:16 final size:16
Alignment explanation
Indices: 45204506--45204558 Score: 74
Period size: 16 Copynumber: 3.3 Consensus size: 16
45204496 AATTAAAAAA
45204506 ATGTAAGTTATGTAAG-T
1 ATGTAAG-T-TGTAAGTT
45204523 -TGTAAGTTGTAAGTT
1 ATGTAAGTTGTAAGTT
45204538 ATGTAAGTTGTAAGTT
1 ATGTAAGTTGTAAGTT
45204554 ATGTA
1 ATGTA
45204559 TAATATTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
14 6 0.18
15 2 0.06
16 26 0.76
ACGTcount: A:0.32, C:0.00, G:0.25, T:0.43
Consensus pattern (16 bp):
ATGTAAGTTGTAAGTT
Found at i:45204536 original size:23 final size:23
Alignment explanation
Indices: 45204507--45204553 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
45204497 ATTAAAAAAA
45204507 TGTAAGTTATGTAAGTTGTAAGT
1 TGTAAGTTATGTAAGTTGTAAGT
45204530 TGTAAGTTATGTAAGTTGTAAGT
1 TGTAAGTTATGTAAGTTGTAAGT
45204553 T
1 T
45204554 ATGTATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.45
Consensus pattern (23 bp):
TGTAAGTTATGTAAGTTGTAAGT
Found at i:45204718 original size:9 final size:9
Alignment explanation
Indices: 45204577--45204862 Score: 71
Period size: 9 Copynumber: 30.6 Consensus size: 9
45204567 ATTAACTAAG
45204577 TTATGTAAT
1 TTATGTAAT
45204586 TTATGTATCAT
1 TTATGTA--AT
*
45204597 ATTAATGTAAG
1 -TT-ATGTAAT
*
45204608 TTATGTAAC
1 TTATGTAAT
*
45204617 ATATGT-AT
1 TTATGTAAT
*
45204625 AATAT-TAA-
1 -TTATGTAAT
** *
45204633 TTAACTAAG
1 TTATGTAAT
45204642 TTATGTAAT
1 TTATGTAAT
45204651 TTATGTATCAT
1 TTATGTA--AT
*
45204662 ATTAATGTAAG
1 -TT-ATGTAAT
*
45204673 TTATGTAAG
1 TTATGTAAT
45204682 TTAT-T--T
1 TTATGTAAT
*
45204688 ATAT-TAAT
1 TTATGTAAT
* *
45204696 TAAT-TAAG
1 TTATGTAAT
45204704 TTATGTAAT
1 TTATGTAAT
45204713 TTATGTATAAT
1 TTATG--TAAT
45204724 ATTAAT-TAAT
1 -TT-ATGTAAT
* *
45204734 TAAT-TAAG
1 TTATGTAAT
45204742 TTATGTAAT
1 TTATGTAAT
45204751 TTATGTATAAT
1 TTATG--TAAT
45204762 ATTAAT-TAAT
1 -TT-ATGTAAT
* *
45204772 TAAT-TAAG
1 TTATGTAAT
45204780 TTATGTAAT
1 TTATGTAAT
45204789 TTATGTATAAT
1 TTATG--TAAT
45204800 ATATAT-TAAT
1 -T-TATGTAAT
* *
45204810 TAAT-TAAG
1 TTATGTAAT
45204818 TTATGTAAT
1 TTATGTAAT
45204827 TTATGTATAAT
1 TTATG--TAAT
45204838 ATTAATGT-AT
1 -TT-ATGTAAT
45204848 GTTATGTAAT
1 -TTATGTAAT
45204858 TTATG
1 TTATG
45204863 AATAATTAAA
Statistics
Matches: 212, Mismatches: 30, Indels: 70
0.68 0.10 0.22
Matches are distributed among these distances:
6 4 0.02
7 2 0.01
8 39 0.18
9 91 0.43
10 22 0.10
11 23 0.11
12 11 0.05
13 20 0.09
ACGTcount: A:0.39, C:0.01, G:0.10, T:0.49
Consensus pattern (9 bp):
TTATGTAAT
Found at i:45204740 original size:38 final size:38
Alignment explanation
Indices: 45204690--45204843 Score: 292
Period size: 38 Copynumber: 4.1 Consensus size: 38
45204680 AGTTATTTAT
45204690 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
1 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
45204728 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
1 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
45204766 ATTAATTAATTAAGTTATGTAATTTATGTATAATA-TA
1 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
45204803 TATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
1 -ATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
45204842 AT
1 AT
45204844 GTATGTTATG
Statistics
Matches: 114, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
37 2 0.02
38 110 0.96
39 2 0.02
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (38 bp):
ATTAATTAATTAAGTTATGTAATTTATGTATAATATTA
Found at i:45204898 original size:16 final size:16
Alignment explanation
Indices: 45204876--45204928 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
45204866 AATTAAAAAA
45204876 ATGTAAGTTATGTAAG-T
1 ATGTAAG-T-TGTAAGTT
*
45204893 -TGTAAGTTATAAGTT
1 ATGTAAGTTGTAAGTT
*
45204908 ATGTAAGTTGTCAGTT
1 ATGTAAGTTGTAAGTT
45204924 ATGTA
1 ATGTA
45204929 TAATATTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
14 5 0.16
15 2 0.06
16 24 0.77
ACGTcount: A:0.32, C:0.02, G:0.23, T:0.43
Consensus pattern (16 bp):
ATGTAAGTTGTAAGTT
Found at i:45204906 original size:23 final size:23
Alignment explanation
Indices: 45204879--45204925 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
45204869 TAAAAAAATG
45204879 TAAGTTATGTAAGTTGTAAGTTA
1 TAAGTTATGTAAGTTGTAAGTTA
*
45204902 TAAGTTATGTAAGTTGTCAGTTA
1 TAAGTTATGTAAGTTGTAAGTTA
45204925 T
1 T
45204926 GTATAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (23 bp):
TAAGTTATGTAAGTTGTAAGTTA
Found at i:45209850 original size:41 final size:40
Alignment explanation
Indices: 45209764--45210165 Score: 259
Period size: 41 Copynumber: 9.8 Consensus size: 40
45209754 TTTTGTTACT
* ** ** * *
45209764 ATTAGCGGCGCTTCGGCAAAAACGCCGCTAAAGGTAAATGC
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGACAGA-GA
* * * *
45209805 ATTAGCGGCGCTTAGATACAAATGCCGCTGAAGACAAGCGA
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGAC-AGAGA
* * * * *
45209846 ATTAGTGGCGCTCAGTTAGAAACGCCGCTAAAGATCCGAGA
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGA-CAGAGA
* *
45209887 ATTAGCGGCGCTT-GTATAAAAACGCCGCTAAAGACCCGAGC
1 ATTAGCGGCGCTTAG-ATAAAAACGCCGCTAAAGA-CAGAGA
* * * *
45209928 ATTAGCGGCGCATAGACAAAAACGCCGCTAAAGATCCGAGC
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGA-CAGAGA
* * ** * *
45209969 ATTAGCGGCGCATACACGAAAACGCCGCTAAAGACTCGAGC
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGAC-AGAGA
* * * * *
45210010 ATTAGCGGCCCCTAGACAAAAACGCCGCTAAAGATCCGAGC
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGA-CAGAGA
* * * ** * * * *
45210051 ATTAGCGGTGCCTACACGAAAACGCTGCTAGAGACTCGAGC
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGAC-AGAGA
* * * *
45210092 ATTAGCTGCGCCTAGACAAAAACGCCGCTAAAGATCCA-AGC
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGA--CAGAGA
* *
45210133 ATTAGCGGCGCTTACACAAAAACGCCGCTAAAG
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAG
45210166 GTTTAAAAAA
Statistics
Matches: 302, Mismatches: 50, Indels: 18
0.82 0.14 0.05
Matches are distributed among these distances:
40 3 0.01
41 294 0.97
42 4 0.01
43 1 0.00
ACGTcount: A:0.34, C:0.27, G:0.24, T:0.15
Consensus pattern (40 bp):
ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGACAGAGA
Found at i:45209914 original size:82 final size:82
Alignment explanation
Indices: 45209764--45210165 Score: 351
Period size: 82 Copynumber: 4.9 Consensus size: 82
45209754 TTTTGTTACT
* * * * ** * * *
45209764 ATTAGCGGCGCTTCGGCAAAAACGCCGCTAAAGGT-AAATGCATTAGCGGCGCTTAGATACAAAT
1 ATTAGCGGCGCATAGACAAAAACGCCGCTAAAGATCCGA-GAATTAGCGGCGCTTAGATAAAAAC
* *
45209828 GCCGCTGAAGACAAGCGA
65 GCCGCTAAAGACAAGAGA
* ** *
45209846 ATTAGTGGCGC-TCAGTTAGAAACGCCGCTAAAGATCCGAGAATTAGCGGCGCTT-GTATAAAAA
1 ATTAGCGGCGCAT-AGACAAAAACGCCGCTAAAGATCCGAGAATTAGCGGCGCTTAG-ATAAAAA
** *
45209909 CGCCGCTAAAGACCCGAGC
64 CGCCGCTAAAGACAAGAGA
* * * **
45209928 ATTAGCGGCGCATAGACAAAAACGCCGCTAAAGATCCGAGCATTAGCGGCGCATACACGAAAACG
1 ATTAGCGGCGCATAGACAAAAACGCCGCTAAAGATCCGAGAATTAGCGGCGCTTAGATAAAAACG
** *
45209993 CCGCTAAAGACTCGAGC
66 CCGCTAAAGACAAGAGA
* * * * * * **
45210010 ATTAGCGGCCCCTAGACAAAAACGCCGCTAAAGATCCGAGCATTAGCGGTGCCTACACGAAAACG
1 ATTAGCGGCGCATAGACAAAAACGCCGCTAAAGATCCGAGAATTAGCGGCGCTTAGATAAAAACG
* * ** *
45210075 CTGCTAGAGACTCGAGC
66 CCGCTAAAGACAAGAGA
* * * * * *
45210092 ATTAGCTGCGCCTAGACAAAAACGCCGCTAAAGATCCAAGCATTAGCGGCGCTTACACAAAAACG
1 ATTAGCGGCGCATAGACAAAAACGCCGCTAAAGATCCGAGAATTAGCGGCGCTTAGATAAAAACG
45210157 CCGCTAAAG
66 CCGCTAAAG
45210166 GTTTAAAAAA
Statistics
Matches: 275, Mismatches: 40, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
81 2 0.01
82 271 0.99
83 2 0.01
ACGTcount: A:0.34, C:0.27, G:0.24, T:0.15
Consensus pattern (82 bp):
ATTAGCGGCGCATAGACAAAAACGCCGCTAAAGATCCGAGAATTAGCGGCGCTTAGATAAAAACG
CCGCTAAAGACAAGAGA
Found at i:45209992 original size:123 final size:122
Alignment explanation
Indices: 45209865--45210165 Score: 390
Period size: 123 Copynumber: 2.4 Consensus size: 122
45209855 GCTCAGTTAG
* *
45209865 AAACGCCGCTAAAGATCCGAGAATTAGCGGCGCTTGTATAAAAACGCCGCTAAAGACCCGAGCAT
1 AAACGCCGCTAAAGATCCGAGCATTAGCGGCGCTTG-ACAAAAACGCCGCTAAAGACCCGAGCAT
* *
45209930 TAGCGGCGCATAGACAAAAACGCCGCTAAAGA-TCCGAGCATTAGCGGCGCATACACGA
65 TAGCGGCGCATACACAAAAACGCCGCTAAAGACT-CGAGCATTAGCGGCGCATACACAA
* * *
45209988 AAACGCCGCTAAAGA-CTCGAGCATTAGCGGCCCCTAGACAAAAACGCCGCTAAAGATCCGAGCA
1 AAACGCCGCTAAAGATC-CGAGCATTAGCGG-CGCTTGACAAAAACGCCGCTAAAGACCCGAGCA
* * * * * * * *
45210052 TTAGCGGTGCCTACACGAAAACGCTGCTAGAGACTCGAGCATTAGCTGCGCCTAGACAA
64 TTAGCGGCGCATACACAAAAACGCCGCTAAAGACTCGAGCATTAGCGGCGCATACACAA
* *
45210111 AAACGCCGCTAAAGATCCAAGCATTAGCGGCGCTTACACAAAAACGCCGCTAAAG
1 AAACGCCGCTAAAGATCCGAGCATTAGCGGCGCTT-GACAAAAACGCCGCTAAAG
45210166 GTTTAAAAAA
Statistics
Matches: 154, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
122 4 0.03
123 144 0.94
124 6 0.04
ACGTcount: A:0.35, C:0.28, G:0.23, T:0.14
Consensus pattern (122 bp):
AAACGCCGCTAAAGATCCGAGCATTAGCGGCGCTTGACAAAAACGCCGCTAAAGACCCGAGCATT
AGCGGCGCATACACAAAAACGCCGCTAAAGACTCGAGCATTAGCGGCGCATACACAA
Found at i:45212948 original size:17 final size:17
Alignment explanation
Indices: 45212926--45212970 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
45212916 AAAAAGTATT
45212926 TTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAA
*
45212943 TTAAAAA-AATTTAAAA
1 TTAAAAATATTTTAAAA
* *
45212959 ATAAATATATTT
1 TTAAAAATATTT
45212971 ATTATATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TTAAAAATATTTTAAAA
Found at i:45213730 original size:25 final size:25
Alignment explanation
Indices: 45213681--45213730 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
45213671 AGTTATATAA
* * *
45213681 TATCCAAACAATAACAAGATAATAG
1 TATCAAAACAACAACAAAATAATAG
45213706 TATCAAAACAACAACAAAATAATAG
1 TATCAAAACAACAACAAAATAATAG
45213731 CAAAACGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.60, C:0.16, G:0.06, T:0.18
Consensus pattern (25 bp):
TATCAAAACAACAACAAAATAATAG
Found at i:45217194 original size:23 final size:22
Alignment explanation
Indices: 45217151--45217197 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
45217141 ACTGTACATG
45217151 TAAATAAAAATTAGAACTTTTT
1 TAAATAAAAATTAGAACTTTTT
45217173 TAAATAAAAATTAGAACTTTTT
1 TAAATAAAAATTAGAACTTTTT
45217195 TAA
1 TAA
45217198 TCATTTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.40
Consensus pattern (22 bp):
TAAATAAAAATTAGAACTTTTT
Found at i:45218102 original size:130 final size:133
Alignment explanation
Indices: 45217698--45218149 Score: 399
Period size: 136 Copynumber: 3.3 Consensus size: 133
45217688 GGAATAATAT
*
45217698 TACTAATA-TATTATA-TTTTTAATTGTAAAAAATTAAACTTATTTTAAATGAAACTTTAAAGAG
1 TACTAATATTATTATATTTTTTAATTGT-AAAAATTAAATTTATTTTAAATGAAACTTTAAAGAG
45217761 ACTTACAAAAGAAATATTTTAATTTTTTTGAAAAACTGTAAACAAATTATGTATAAATTAAAAAT
65 ACTTACAAAAGAAATATTTTAATTTTTTTGAAAAACTGTAAACAAATTATGTATAAATTAAAAAT
45217826 ATTA
130 ATTA
* * * * *
45217830 CTACTAATATTATTATATTTTTTTAATTGTTAAAATTAAATTTATGATAGTT-TATAAAAATTAC
1 -TACTAATATTATTATA-TTTTTTAATTGTAAAAATTAAATTTAT--T--TTAAATGAAACTT-T
* * * ** * * *** * * *
45217894 AAACA-AATGT--AAAATACTTGTTTCTGTATATTATCTTTT-ACACGTTGGACAAAACAAGTAA
59 AAAGAGACT-TACAAAAGAAAT-ATT-T-TA-ATT-T-TTTTGAAAAACT-G--TAAACAAATTA
** *
45217955 T-TAT-TTTTGGAATAATA-T-
114 TGTATAAATT--AAAAATATTA
45217973 TACTAATA-TATTATA-TTTTTAATTGTAAAAAATTAAATTTATTTTAAATGAAACTTTAAAGAG
1 TACTAATATTATTATATTTTTTAATTGT-AAAAATTAAATTTATTTTAAATGAAACTTTAAAGAG
45218036 ACTTACAAAAGAAATATTTTAATTTTTTTGAAAAACTGTAAACAAATTATGTATAAATTAAAAAT
65 ACTTACAAAAGAAATATTTTAATTTTTTTGAAAAACTGTAAACAAATTATGTATAAATTAAAAAT
45218101 ATTA
130 ATTA
*
45218105 CTACTAATATTATTATATTTTTTTAATTGTTAAAATTAAATTTAT
1 -TACTAATATTATTATA-TTTTTTAATTGTAAAAATTAAATTTAT
45218150 GATAGTTTAT
Statistics
Matches: 241, Mismatches: 44, Indels: 66
0.69 0.13 0.19
Matches are distributed among these distances:
130 15 0.06
131 4 0.02
132 7 0.03
133 20 0.08
134 17 0.07
135 29 0.12
136 30 0.12
137 18 0.07
138 18 0.07
139 19 0.08
140 16 0.07
141 10 0.04
142 12 0.05
143 7 0.03
144 4 0.02
145 15 0.06
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (133 bp):
TACTAATATTATTATATTTTTTAATTGTAAAAATTAAATTTATTTTAAATGAAACTTTAAAGAGA
CTTACAAAAGAAATATTTTAATTTTTTTGAAAAACTGTAAACAAATTATGTATAAATTAAAAATA
TTA
Found at i:45218165 original size:275 final size:275
Alignment explanation
Indices: 45217674--45218222 Score: 1062
Period size: 275 Copynumber: 2.0 Consensus size: 275
45217664 TTATTATTCT
45217674 AAGTAATAATTTTTGGAATAATATTACTAATATATTATATTTTTAATTGTAAAAAATTAAACTTA
1 AAGTAATAATTTTTGGAATAATATTACTAATATATTATATTTTTAATTGTAAAAAATTAAACTTA
45217739 TTTTAAATGAAACTTTAAAGAGACTTACAAAAGAAATATTTTAATTTTTTTGAAAAACTGTAAAC
66 TTTTAAATGAAACTTTAAAGAGACTTACAAAAGAAATATTTTAATTTTTTTGAAAAACTGTAAAC
45217804 AAATTATGTATAAATTAAAAATATTACTACTAATATTATTATATTTTTTTAATTGTTAAAATTAA
131 AAATTATGTATAAATTAAAAATATTACTACTAATATTATTATATTTTTTTAATTGTTAAAATTAA
45217869 ATTTATGATAGTTTATAAAAATTACAAACAAATGTAAAATACTTGTTTCTGTATATTATCTTTTA
196 ATTTATGATAGTTTATAAAAATTACAAACAAATGTAAAATACTTGTTTCTGTATATTATCTTTTA
*
45217934 CACGTTGGACAAAAC
261 CACATTGGACAAAAC
* *
45217949 AAGTAATTATTTTTGGAATAATATTACTAATATATTATATTTTTAATTGTAAAAAATTAAATTTA
1 AAGTAATAATTTTTGGAATAATATTACTAATATATTATATTTTTAATTGTAAAAAATTAAACTTA
45218014 TTTTAAATGAAACTTTAAAGAGACTTACAAAAGAAATATTTTAATTTTTTTGAAAAACTGTAAAC
66 TTTTAAATGAAACTTTAAAGAGACTTACAAAAGAAATATTTTAATTTTTTTGAAAAACTGTAAAC
45218079 AAATTATGTATAAATTAAAAATATTACTACTAATATTATTATATTTTTTTAATTGTTAAAATTAA
131 AAATTATGTATAAATTAAAAATATTACTACTAATATTATTATATTTTTTTAATTGTTAAAATTAA
*
45218144 ATTTATGATAGTTTATAAAAATTGCAAACAAATGTAAAATACTTGTTTCTGTATATTATCTTTTA
196 ATTTATGATAGTTTATAAAAATTACAAACAAATGTAAAATACTTGTTTCTGTATATTATCTTTTA
45218209 CACATTGGACAAAA
261 CACATTGGACAAAA
45218223 AAATGCACGT
Statistics
Matches: 270, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
275 270 1.00
ACGTcount: A:0.44, C:0.06, G:0.07, T:0.42
Consensus pattern (275 bp):
AAGTAATAATTTTTGGAATAATATTACTAATATATTATATTTTTAATTGTAAAAAATTAAACTTA
TTTTAAATGAAACTTTAAAGAGACTTACAAAAGAAATATTTTAATTTTTTTGAAAAACTGTAAAC
AAATTATGTATAAATTAAAAATATTACTACTAATATTATTATATTTTTTTAATTGTTAAAATTAA
ATTTATGATAGTTTATAAAAATTACAAACAAATGTAAAATACTTGTTTCTGTATATTATCTTTTA
CACATTGGACAAAAC
Found at i:45218322 original size:7 final size:7
Alignment explanation
Indices: 45218312--45218346 Score: 61
Period size: 7 Copynumber: 4.9 Consensus size: 7
45218302 ATTAAAAATA
45218312 TATATTT
1 TATATTT
45218319 TATATTT
1 TATATTT
45218326 TATATTT
1 TATATTT
45218333 TATATTT
1 TATATTT
45218340 TAATATT
1 T-ATATT
45218347 GTATGTAGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 22 0.81
8 5 0.19
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (7 bp):
TATATTT
Found at i:45220147 original size:68 final size:68
Alignment explanation
Indices: 45219992--45220137 Score: 204
Period size: 68 Copynumber: 2.1 Consensus size: 68
45219982 GTTTTGCTTA
* * * * **
45219992 CATAAGAGTCATCGGT-TAATCACTTTTCTTAGAAAGTAAAGTTAAATATCAGTATAGGATAATA
1 CATAAGAGTCAT-AGTCTAATTATTTTTCTTAGAAAGTAAAGTTAAAAATCAACATAGGATAATA
45220056 ATTC
65 ATTC
* *
45220060 CATAAGAGTCATAGTCTAATTATTTTTCTTATAAAGTAAAGTTAAAAATCAACATATGATAATAA
1 CATAAGAGTCATAGTCTAATTATTTTTCTTAGAAAGTAAAGTTAAAAATCAACATAGGATAATAA
45220125 TTC
66 TTC
45220128 CATAAGAGTC
1 CATAAGAGTC
45220138 TTGATCTAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
67 2 0.03
68 67 0.97
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (68 bp):
CATAAGAGTCATAGTCTAATTATTTTTCTTAGAAAGTAAAGTTAAAAATCAACATAGGATAATAA
TTC
Found at i:45226750 original size:42 final size:41
Alignment explanation
Indices: 45226654--45226817 Score: 202
Period size: 42 Copynumber: 4.0 Consensus size: 41
45226644 GTTAATATTT
* * *
45226654 TAAGCACCGCTAAAGAACACGGTCTTTAGCGGTGTTTTTTC
1 TAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTC
* * * *
45226695 CAAGCGCCTCTAAAGAACATGGTCCTTAACGGCGTTTCTTTC
1 TAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTT-TTTC
** *
45226737 TAAGCGCCGCTAAAGAACATTATCTTTAGCTGCGTTTTTTAC
1 TAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTT-C
* *
45226779 TAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTT
1 TAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTT
45226818 ATACAAAAGC
Statistics
Matches: 103, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
41 33 0.32
42 70 0.68
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (41 bp):
TAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTC
Found at i:45227159 original size:21 final size:21
Alignment explanation
Indices: 45227133--45227203 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
45227123 TTTTGCTCTA
*
45227133 CTCTGCTTCTCTCGCTGCAAC
1 CTCTGCTTCCCTCGCTGCAAC
* **
45227154 CTCTGCTTCCCTCACTGCAGT
1 CTCTGCTTCCCTCGCTGCAAC
* * *
45227175 CACTACTTCCCTCGCTGCCAC
1 CTCTGCTTCCCTCGCTGCAAC
45227196 CTCTGCTT
1 CTCTGCTT
45227204 TAAGTTGTAG
Statistics
Matches: 38, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.10, C:0.45, G:0.13, T:0.32
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAAC
Found at i:45235549 original size:16 final size:16
Alignment explanation
Indices: 45235505--45235614 Score: 88
Period size: 19 Copynumber: 6.9 Consensus size: 16
45235495 GATTTTAGTA
45235505 AAGTATATATTCCAGC
1 AAGTATATATTCCAGC
45235521 AAGTGGAATATATTCCAGC
1 AAGT---ATATATTCCAGC
**
45235540 AAGTATATATT-TGGC
1 AAGTATATATTCCAGC
*
45235555 ---CATATATTCCAGC
1 AAGTATATATTCCAGC
45235568 AAG--TATATTCCAGC
1 AAGTATATATTCCAGC
*
45235582 AACTGGAATATATTCCAGC
1 AA---GTATATATTCCAGC
45235601 AAGTATATATTCCA
1 AAGTATATATTCCA
45235615 AAGTTATAGT
Statistics
Matches: 76, Mismatches: 6, Indels: 24
0.72 0.06 0.23
Matches are distributed among these distances:
12 7 0.09
13 2 0.03
14 13 0.17
15 2 0.03
16 22 0.29
17 1 0.01
19 29 0.38
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (16 bp):
AAGTATATATTCCAGC
Found at i:45235574 original size:14 final size:14
Alignment explanation
Indices: 45235529--45235608 Score: 63
Period size: 14 Copynumber: 5.4 Consensus size: 14
45235519 GCAAGTGGAA
45235529 TATATTCCAGCAAG
1 TATATTCCAGCAAG
*** *
45235543 TATATATTTGGCCA-
1 TATAT-TCCAGCAAG
45235557 TATATTCCAGCAAG
1 TATATTCCAGCAAG
45235571 TATATTCCAGCAACTGG
1 TATATTCCAGCAA---G
45235588 AATATATTCCAGCAAG
1 --TATATTCCAGCAAG
45235604 TATAT
1 TATAT
45235609 ATTCCAAAGT
Statistics
Matches: 51, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
13 4 0.08
14 28 0.55
15 4 0.08
16 1 0.02
17 1 0.02
19 13 0.25
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.33
Consensus pattern (14 bp):
TATATTCCAGCAAG
Found at i:45236373 original size:148 final size:148
Alignment explanation
Indices: 45236091--45236357 Score: 354
Period size: 148 Copynumber: 1.8 Consensus size: 148
45236081 CGCTTAGAGC
* * * *
45236091 AAAAACGCCACAAATACCATGGACAAAATGACACCGTTATTAGATAACCATAAACATTTTTACGG
1 AAAAACGCCACAAATAACATGGACAAAACGACACCGTTATCAGAAAACCATAAACATTTTTACGG
* * * *
45236156 CGTTTTATCAAAAGTGCCACTAAAAAAAATAGGAAACGGCATCGTTACCTCAACCACTAATAAAT
66 CGCTTTAGCAAAAGCGCCACTAAAAAAAATAGGAAACGGCACCGTTACCTCAACCACTAATAAAT
45236221 ATTTGTGACGCTTGCAGT
131 ATTTGTGACGCTTGCAGT
* * * *
45236239 AAAAACGCCACTAATAACATTGACAAAACGACACCGTTATCAGAAAACCTTAAACATTTTTGCGG
1 AAAAACGCCACAAATAACATGGACAAAACGACACCGTTATCAGAAAACCATAAACATTTTTACGG
** * * * ** *
45236304 CGCTTTAGCTGAAGCGCCACTAATAAAAGTTGGAAACGGTGCCGTTTCCTCAAC
66 CGCTTTAGCAAAAGCGCCACTAAAAAAAATAGGAAACGGCACCGTTACCTCAAC
45236358 TCGTAGTAAA
Statistics
Matches: 99, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
148 99 1.00
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (148 bp):
AAAAACGCCACAAATAACATGGACAAAACGACACCGTTATCAGAAAACCATAAACATTTTTACGG
CGCTTTAGCAAAAGCGCCACTAAAAAAAATAGGAAACGGCACCGTTACCTCAACCACTAATAAAT
ATTTGTGACGCTTGCAGT
Found at i:45236906 original size:15 final size:15
Alignment explanation
Indices: 45236871--45236903 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
45236861 TCTAAGCTGC
45236871 TAAACCTTTAAACCT
1 TAAACCTTTAAACCT
*
45236886 TAAACC-TTAAATCT
1 TAAACCTTTAAACCT
45236900 TAAA
1 TAAA
45236904 ACCAATAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.33
Consensus pattern (15 bp):
TAAACCTTTAAACCT
Found at i:45237565 original size:21 final size:21
Alignment explanation
Indices: 45237510--45237566 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 21
45237500 CCAAACTTTC
* * *
45237510 AAACCCTAAACCGAAAACACT
1 AAACCCTAAACTGTAAACACG
* * *
45237531 AAA-CCTACATTGTAAACTCG
1 AAACCCTAAACTGTAAACACG
45237551 AAACCCTAAACTGTAA
1 AAACCCTAAACTGTAA
45237567 TCCAAAAATA
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.47, C:0.28, G:0.07, T:0.18
Consensus pattern (21 bp):
AAACCCTAAACTGTAAACACG
Found at i:45238010 original size:114 final size:114
Alignment explanation
Indices: 45237683--45238387 Score: 679
Period size: 115 Copynumber: 6.2 Consensus size: 114
45237673 CCAAAACTCT
* * * * * * * * * *
45237683 GTTAAGATATTTTGCGGTGCTTTCAAAACAGCGCCACTAACAATATGCTTTCGCGGCGGTTTCCT
1 GTTAAGATATTTTGCGGCGCATCCACAA-AGCGCCGCTAATACTATCCTTTAGCGGCGTTTTCCT
* * * * * *
45237748 GTAAGTGCCACAAATTTTAGTATACATCAAGACCAAAACGTTGCGTTTTG
65 ATAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGCGTTTTG
* * * * *
45237798 GTTAAGGTATTTTGCGGCGCTAGCCACAAATCGCCACTAATACTATGCTTTAGCGGCG-TTTCAC
1 GTTAAGATATTTTGCGGCGC-ATCCACAAAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTC-C
** * *
45237862 CGTAAGCGCCAATAATTC-AAGTATACATCCAGACCAAAACGCTGCGTTTTG
64 TATAAGCGCCACTAATTCTAA-TATACATCAAGACCAAAACGCTGCGTTTTG
* * *
45237913 GTTCAA-ATATTTTGCGGCACATCCAAAAAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTCCA
1 GTT-AAGATATTTTGCGGCGCATCCACAAAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTCCT
** * * *
45237977 ATAAGCGCCACTAACGCTAACATACCTCAAGACCAAAACTCTGCGTTTTG
65 ATAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGCGTTTTG
* ** * *
45238027 GTTAAGATATTTTGCGGCGCTTTTACCAAAGCGCCGCTAATACTATCCTTTAACGGCGTTTTACT
1 GTTAAGATATTTTGCGGCGCATCCA-CAAAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTCCT
* *
45238092 ATAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGCTGTGTTTTG
65 ATAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGCGTTTTG
* * * ** * * * *
45238142 GTTAAGATATTTTGCGACGCCAGCCACGACTCGCCGCTAATACTATGCTTTAGTGACGTTTTCGG
1 GTTAAGATATTTTGCGGCG-CATCCACAAAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTC-C
* * * * *
45238207 TA-AA-AGCCACTAATTCTAGTATA-AGCAAGACTAAAACGATGCGTTTTG
64 TATAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGCGTTTTG
* * * * * * * *
45238255 GTTCAGATATTTCGCGGTGCTTTCAAAAAGCGCCGCTAATACTAT-CTATTTGTGGCGTTTTCCT
1 GTTAAGATATTTTGCGGCGCATCCACAAAGCGCCGCTAATACTATCCT-TTAGCGGCGTTTTCCT
* * *
45238319 ATAAGCGCCACTAATTCTAACATACCTCAAGACC-AAACTCTGCGTTTTG
65 ATAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGCGTTTTG
*
45238368 GTTAAGATATTTTGCAGCGC
1 GTTAAGATATTTTGCGGCGC
45238388 TATGCTTTAA
Statistics
Matches: 482, Mismatches: 94, Indels: 30
0.80 0.16 0.05
Matches are distributed among these distances:
111 4 0.01
112 33 0.07
113 83 0.17
114 119 0.25
115 233 0.48
116 10 0.02
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (114 bp):
GTTAAGATATTTTGCGGCGCATCCACAAAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTCCTA
TAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGCGTTTTG
Found at i:45238218 original size:229 final size:227
Alignment explanation
Indices: 45237769--45238382 Score: 684
Period size: 229 Copynumber: 2.7 Consensus size: 227
45237759 AAATTTTAGT
* ** *
45237769 ATACATCAAGACCAAAACGTTGCGTTTTGGTTAAGGTATTTTGCGGCGCTAGC-CACAAATCGCC
1 ATACATCAAGACCAAAAC-TTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTCAC-CAAAGCGCC
* * ** * * *
45237833 ACTAATACTATGCTTTAGCGGCGTTTCACCGTAAGCGCCAATAATTCAAGTATACATCCAGACCA
64 GCTAATACTAT-CTTTAGCGGCGTTTTACTATAAGCGCCACTAATTCTAGTATACATCAAGACCA
*
45237898 AAACGCTGCGTTTTGGTTCAA-ATATTTTGCGGCACATCCAAAAAGCGCCGCTAATACTATCCTT
128 AAACGCTGCGTTTTGGTT-AAGATATTTTGCGGCACAGCCAAAAAGCGCCGCTAATACTATCCTT
* **
45237962 TAGCGGCGTTTTCCAATAAGCGCCACTAACGCTAAC
192 TAGCGACGTTTTCCAATAAAAGCCACTAACGCTAAC
* *
45237998 ATACCTCAAGACCAAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTACCAAAGCGCCG
1 ATACATCAAGACCAAAACT-TGCGTTTTGGTTAAGATATTTTGCGGCGCTTTCACCAAAGCGCCG
*
45238063 CTAATACTATCCTTTAACGGCGTTTTACTATAAGCGCCACTAATTCTAGTATACATCAAGACCAA
65 CTAATACTAT-CTTTAGCGGCGTTTTACTATAAGCGCCACTAATTCTAGTATACATCAAGACCAA
* ** ** *
45238128 AACGCTGTGTTTTGGTTAAGATATTTTGCGACGC-CAGCCACGACTCGCCGCTAATACTATGCTT
129 AACGCTGCGTTTTGGTTAAGATATTTTGCG--GCACAGCCAAAAAGCGCCGCTAATACTATCCTT
* ** ** **
45238192 TAGTGACGTTTT-CGGTAAAAGCCACTAATTCTAGT
192 TAGCGACGTTTTCCAATAAAAGCCACTAACGCTAAC
* * * * * * *
45238227 ATA-AGCAAGACTAAAACGATGCGTTTTGGTTCAGATATTTCGCGGTGCTTTCA-AAAAGCGCCG
1 ATACATCAAGACCAAAAC-TTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTCACCAAAGCGCCG
* * * ** *
45238290 CTAATACTATCTATTTGTGGCGTTTTCCTATAAGCGCCACTAATTCTAACATACCTCAAGACC-A
65 CTAATACTATCT-TTAGCGGCGTTTTACTATAAGCGCCACTAATTCTAGTATACATCAAGACCAA
*
45238354 AACTCTGCGTTTTGGTTAAGATATTTTGC
129 AACGCTGCGTTTTGGTTAAGATATTTTGC
45238383 AGCGCTATGC
Statistics
Matches: 328, Mismatches: 50, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
226 30 0.09
227 62 0.19
228 44 0.13
229 155 0.47
230 35 0.11
231 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (227 bp):
ATACATCAAGACCAAAACTTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTCACCAAAGCGCCGC
TAATACTATCTTTAGCGGCGTTTTACTATAAGCGCCACTAATTCTAGTATACATCAAGACCAAAA
CGCTGCGTTTTGGTTAAGATATTTTGCGGCACAGCCAAAAAGCGCCGCTAATACTATCCTTTAGC
GACGTTTTCCAATAAAAGCCACTAACGCTAAC
Found at i:45238534 original size:204 final size:204
Alignment explanation
Indices: 45238212--45238593 Score: 477
Period size: 205 Copynumber: 1.9 Consensus size: 204
45238202 TTCGGTAAAA
* * * * *
45238212 GCCACTAATTCTAGTATAAGCAAGACTAAAACGATGCGTTTTGGTTCAGATATTTCGCGGTGCTT
1 GCCACTAATTCTAGGATAAGCAAGACCAAAACGATGCGTTTCGGTTAAGATATTTCGCGGCGCTT
* * * *
45238277 TCAAAAAGCGCCGCTAATACTATCTATTTGTGGCGTTTTCCTATAAGCGCCACTAATTCTAACAT
66 TCAAAAAGCACCGCTAATAC-AGCTATTAGCGGCGTTTTCCTATAAGCGCCACTAATTCTAACAT
* * * * *
45238342 ACCTCAAGAC-CAAACTCTGCGTTTTGGTTAAGATATTTTGCAGCGCTATGCTTTAACGGCATTT
130 ACATCAAGACAAAAACGCTGCATTTTGGTTAAGAGATTTTGCAGCGCTATGCTTTAACGGCATTT
45238406 TCCCTTAAGC
195 TCCCTTAAGC
* * *
45238416 GCCACTAATTCTAGGATACATCAAGACCGAAACGATGCGTTTCGGTTAAGATATTTTTGCGGCGC
1 GCCACTAATTCTAGGATA-AGCAAGACCAAAACGATGCGTTTCGGTTAAGATA-TTTCGCGGCGC
* *
45238481 ATTTCGCAAAA-CACCGCTAATAC-GCT-TTAGCGGCGTTTT-CTCATAATCGCCACTAATTCTA
64 -TTTC-AAAAAGCACCGCTAATACAGCTATTAGCGGCGTTTTCCT-ATAAGCGCCACTAATTCTA
** *
45238542 GTATACATCAAGACAAAAACGCTGCATTTTGGTTAAGAGATTTTGCGGCGCT
126 ACATACATCAAGACAAAAACGCTGCATTTTGGTTAAGAGATTTTGCAGCGCT
45238594 CTGTGGTAAA
Statistics
Matches: 150, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
203 2 0.01
204 57 0.38
205 63 0.42
206 9 0.06
207 15 0.10
208 4 0.03
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (204 bp):
GCCACTAATTCTAGGATAAGCAAGACCAAAACGATGCGTTTCGGTTAAGATATTTCGCGGCGCTT
TCAAAAAGCACCGCTAATACAGCTATTAGCGGCGTTTTCCTATAAGCGCCACTAATTCTAACATA
CATCAAGACAAAAACGCTGCATTTTGGTTAAGAGATTTTGCAGCGCTATGCTTTAACGGCATTTT
CCCTTAAGC
Found at i:45240463 original size:8 final size:8
Alignment explanation
Indices: 45240452--45240494 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
45240442 AATATTTATA
45240452 AAAATTCT
1 AAAATTCT
45240460 AAAATT-T
1 AAAATTCT
* * *
45240467 ATATTTAT
1 AAAATTCT
45240475 AAAATTCT
1 AAAATTCT
45240483 AAAATTCT
1 AAAATTCT
45240491 AAAA
1 AAAA
45240495 ATATATATAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
7 5 0.17
8 24 0.83
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (8 bp):
AAAATTCT
Found at i:45240482 original size:23 final size:24
Alignment explanation
Indices: 45240443--45240488 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 24
45240433 AAATTAAAAA
45240443 ATATTTATAAAAATTCTAAAATTT
1 ATATTTATAAAAATTCTAAAATTT
45240467 ATATTTAT-AAAATTCTAAAATT
1 ATATTTATAAAAATTCTAAAATT
45240489 CTAAAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (24 bp):
ATATTTATAAAAATTCTAAAATTT
Found at i:45242438 original size:40 final size:39
Alignment explanation
Indices: 45242379--45242472 Score: 152
Period size: 40 Copynumber: 2.4 Consensus size: 39
45242369 CAATTCAAAC
*
45242379 AAAATTAAATTCAAACCATAAAATTAATCAACATATAAA
1 AAAATTAAATTCAAACCATAAAATCAATCAACATATAAA
*
45242418 AAAACTTAAATTCAAACCATAAAATCAATCGACATATAAA
1 AAAA-TTAAATTCAAACCATAAAATCAATCAACATATAAA
45242458 AAAATTTAAATTCAA
1 AAAA-TTAAATTCAA
45242473 TCTTGAAATA
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 4 0.08
40 47 0.92
ACGTcount: A:0.60, C:0.14, G:0.01, T:0.26
Consensus pattern (39 bp):
AAAATTAAATTCAAACCATAAAATCAATCAACATATAAA
Found at i:45242873 original size:15 final size:16
Alignment explanation
Indices: 45242848--45242877 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
45242838 TAAATATAAT
45242848 TTTATTATTTTAATAG
1 TTTATTATTTTAATAG
45242864 TTTA-TATTTTAATA
1 TTTATTATTTTAATA
45242878 ATTCATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (16 bp):
TTTATTATTTTAATAG
Found at i:45243666 original size:21 final size:21
Alignment explanation
Indices: 45243637--45243679 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
45243627 ACAATATTAA
*
45243637 AAACATTTTTTTTAAATTCATC
1 AAACA-TTTTATTAAATTCATC
*
45243659 AAAC-TTTTATTAAATTTATC
1 AAACATTTTATTAAATTCATC
45243679 A
1 A
45243680 CAAATAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 15 0.79
22 4 0.21
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.49
Consensus pattern (21 bp):
AAACATTTTATTAAATTCATC
Done.