Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 150 of 205
Found at i:45457391 original size:10 final size:10
Alignment explanation
Indices: 45457371--45457471 Score: 79
Period size: 10 Copynumber: 10.2 Consensus size: 10
45457361 ACCCATTTTT
45457371 ATTTT-AAAA
1 ATTTTAAAAA
45457380 ATTTTAAAAA
1 ATTTTAAAAA
**
45457390 ATTAAAAAAA
1 ATTTTAAAAA
45457400 GTATTTTAAAAA
1 --ATTTTAAAAA
*
45457412 TATTTTAAAAT
1 -ATTTTAAAAA
*
45457423 ATTTTAAAAT
1 ATTTTAAAAA
45457433 ATTTT--AAA
1 ATTTTAAAAA
45457441 A--TT-AAAA
1 ATTTTAAAAA
45457448 ATATTTAAAAA
1 AT-TTTAAAAA
45457459 ATATTTAAAAA
1 AT-TTTAAAAA
45457470 AT
1 AT
45457472 ATTTTAAAAT
Statistics
Matches: 78, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
6 2 0.03
7 4 0.05
8 3 0.04
9 5 0.06
10 29 0.37
11 27 0.35
12 8 0.10
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (10 bp):
ATTTTAAAAA
Found at i:45457410 original size:11 final size:10
Alignment explanation
Indices: 45457396--45457481 Score: 88
Period size: 10 Copynumber: 8.5 Consensus size: 10
45457386 AAAAATTAAA
45457396 AAAAGTATTTT
1 AAAA-TATTTT
45457407 AAAAATATTTT
1 -AAAATATTTT
45457418 AAAATATTTT
1 AAAATATTTT
45457428 AAAATATTTT
1 AAAATATTTT
*
45457438 -AAA-A-TTA
1 AAAATATTTT
*
45457445 AAAATATTTAA
1 AAAATATTT-T
*
45457456 AAAATATTTAA
1 AAAATATTT-T
45457467 AAAATATTTT
1 AAAATATTTT
45457477 AAAAT
1 AAAAT
45457482 TAAAAAAAAT
Statistics
Matches: 68, Mismatches: 2, Indels: 10
0.85 0.03 0.12
Matches are distributed among these distances:
7 2 0.03
8 4 0.06
9 4 0.06
10 27 0.40
11 27 0.40
12 4 0.06
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (10 bp):
AAAATATTTT
Found at i:45457480 original size:10 final size:10
Alignment explanation
Indices: 45457370--45457481 Score: 97
Period size: 11 Copynumber: 11.1 Consensus size: 10
45457360 GACCCATTTT
45457370 TATTTTAAAA
1 TATTTTAAAA
45457380 -ATTTTAAAA
1 TATTTTAAAA
* **
45457389 AATTAAAAAAA
1 TATT-TTAAAA
45457400 GTATTTTAAAAA
1 -TATTTT-AAAA
45457412 TATTTTAAAA
1 TATTTTAAAA
45457422 TATTTTAAAA
1 TATTTTAAAA
45457432 TATTTT-AAA
1 TATTTTAAAA
*
45457441 -A-TTAAAAA
1 TATTTTAAAA
*
45457449 TATTTAAAAAA
1 TATTT-TAAAA
*
45457460 TATTTAAAAAA
1 TATTT-TAAAA
45457471 TATTTTAAAA
1 TATTTTAAAA
45457481 T
1 T
45457482 TAAAAAAAAT
Statistics
Matches: 87, Mismatches: 7, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
7 2 0.02
8 4 0.05
9 13 0.15
10 30 0.34
11 31 0.36
12 7 0.08
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (10 bp):
TATTTTAAAA
Found at i:45457510 original size:42 final size:40
Alignment explanation
Indices: 45457428--45457532 Score: 158
Period size: 42 Copynumber: 2.6 Consensus size: 40
45457418 AAAATATTTT
* * *
45457428 AAAATATTTTAAAATT-AAAAATATTTAAAAAATATTTAA
1 AAAATATTTTAAAATTAAAAAAAATTAAAAAAATATGTAA
45457467 AAAATATTTTAAAATTAAAAAAAATTAAAACAAAGTATGTAA
1 AAAATATTTTAAAATTAAAAAAAATTAAAA-AAA-TATGTAA
45457509 AAAATATTTTAAAATTAAAAAAAA
1 AAAATATTTTAAAATTAAAAAAAA
45457533 AATATATTTA
Statistics
Matches: 60, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
39 16 0.27
40 11 0.18
41 3 0.05
42 30 0.50
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (40 bp):
AAAATATTTTAAAATTAAAAAAAATTAAAAAAATATGTAA
Found at i:45461337 original size:89 final size:83
Alignment explanation
Indices: 45461231--45461443 Score: 255
Period size: 83 Copynumber: 2.6 Consensus size: 83
45461221 TATAAATAAC
* *
45461231 TTATTTAATATATAAATTAAAAAGTACTAATTAATTCAAATCTTAAACCCT-AACCCGACCCCAA
1 TTATTTAATATAAAAATTAAAAA--AC--ACTAATT--AATC-TAAACCCTAAACCCGACCCCAA
45461295 ATCCCTAACCCCTAACCACTAAACT
59 ATCCCTAACCCCTAACCACTAAACT
*
45461320 TTATTTAATATAAAAATTAAAAAACACTAATTAATCTAAACCTTAAACCCGACCCCAAATCCCTA
1 TTATTTAATATAAAAATTAAAAAACACTAATTAATCTAAACCCTAAACCCGACCCCAAATCCCTA
45461385 ACCCCTAA--A-T----T
66 ACCCCTAACCACTAAACT
* *
45461396 TTATTTAATATATAACTT-AAAAACACTAATTAATCTAAACCCTAAACC
1 TTATTTAATATAAAAATTAAAAAACACTAATTAATCTAAACCCTAAACC
45461444 ATAACCCGAT
Statistics
Matches: 117, Mismatches: 6, Indels: 16
0.84 0.04 0.12
Matches are distributed among these distances:
75 29 0.25
76 17 0.15
80 1 0.01
81 1 0.01
82 7 0.06
83 32 0.27
85 6 0.05
87 2 0.02
89 22 0.19
ACGTcount: A:0.45, C:0.24, G:0.01, T:0.29
Consensus pattern (83 bp):
TTATTTAATATAAAAATTAAAAAACACTAATTAATCTAAACCCTAAACCCGACCCCAAATCCCTA
ACCCCTAACCACTAAACT
Found at i:45461399 original size:76 final size:75
Alignment explanation
Indices: 45461304--45461443 Score: 226
Period size: 76 Copynumber: 1.9 Consensus size: 75
45461294 AATCCCTAAC
*
45461304 CCCTAACCACTAAACTTTATTTAATATAAAAATTAAAAAACACTAATTAATCTAAACCTTAAACC
1 CCCTAACCACTAAACTTTATTTAATATAAAAATT-AAAAACACTAATTAATCTAAACCCTAAACC
45461369 CGACCCCAAAT
65 CGACCCCAAAT
* * * *
45461380 CCCTAACCCCTAAATTTTATTTAATATATAACTTAAAAACACTAATTAATCTAAACCCTAAACC
1 CCCTAACCACTAAACTTTATTTAATATAAAAATTAAAAACACTAATTAATCTAAACCCTAAACC
45461444 ATAACCCGAT
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
75 29 0.49
76 30 0.51
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.29
Consensus pattern (75 bp):
CCCTAACCACTAAACTTTATTTAATATAAAAATTAAAAACACTAATTAATCTAAACCCTAAACCC
GACCCCAAAT
Found at i:45461442 original size:7 final size:7
Alignment explanation
Indices: 45461430--45461496 Score: 50
Period size: 7 Copynumber: 10.0 Consensus size: 7
45461420 ACTAATTAAT
45461430 CTAAACC
1 CTAAACC
45461437 CTAAACC
1 CTAAACC
*
45461444 AT-AACC
1 CTAAACC
* *
45461450 C-GATCC
1 CTAAACC
45461456 CT-AACC
1 CTAAACC
45461462 CTAAACC
1 CTAAACC
* *
45461469 ATAACCC
1 CTAAACC
*
45461476 CTAACCC
1 CTAAACC
*
45461483 CTAATCC
1 CTAAACC
45461490 CTAAACC
1 CTAAACC
45461497 TTATTTAATA
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
6 13 0.27
7 35 0.73
ACGTcount: A:0.37, C:0.45, G:0.01, T:0.16
Consensus pattern (7 bp):
CTAAACC
Found at i:45461627 original size:14 final size:14
Alignment explanation
Indices: 45461608--45461647 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
45461598 CCCATAACCT
45461608 AATCCCTAACCCTG
1 AATCCCTAACCCTG
*
45461622 AATCCCTAACCCTT
1 AATCCCTAACCCTG
*
45461636 AAACCCTAACCC
1 AATCCCTAACCC
45461648 CTAACACTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.33, C:0.45, G:0.03, T:0.20
Consensus pattern (14 bp):
AATCCCTAACCCTG
Found at i:45461649 original size:21 final size:22
Alignment explanation
Indices: 45461615--45461661 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
45461605 CCTAATCCCT
* *
45461615 AACCCTGAATCCCTAACCCTTA
1 AACCCTGAACCCCTAACACTTA
45461637 AACCCT-AACCCCTAACACTTA
1 AACCCTGAACCCCTAACACTTA
45461658 AACC
1 AACC
45461662 TTATTTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.36, C:0.43, G:0.02, T:0.19
Consensus pattern (22 bp):
AACCCTGAACCCCTAACACTTA
Found at i:45461784 original size:164 final size:164
Alignment explanation
Indices: 45461454--45461802 Score: 517
Period size: 164 Copynumber: 2.1 Consensus size: 164
45461444 ATAACCCGAT
* *
45461454 CCCT-AACCCTAAACCATAACCCCTAACCCCTAATCCCTAAACCTTATTTAATATATAATTAAAA
1 CCCTGAACCCTAAACCTTAAACCCTAACCCCTAATCCCTAAACCTTATTTAATATATAATTAAAA
* *
45461518 CACACTAATTAATCTAAATCCCTAAACTCTAACCTAACACCGATTTTATAAACCCTAAATCCCTA
66 CACACTAATTAATCTAAATCCCTAAACTCTAACCTAACACCAAATTTATAAACCCTAAATCCCTA
*
45461583 ACTCTTAATATCTAACCCATAACCTAATCCCTAA
131 ACTCTTAACATCTAACCCATAACCTAATCCCTAA
* *
45461617 CCCTGAATCCCTAACCCTTAAACCCTAACCCCTAA-CACTTAAACCTTATTTAATATATAATTAA
1 CCCTGAA-CCCTAAACCTTAAACCCTAACCCCTAATC-CCTAAACCTTATTTAATATATAATTAA
* * * *
45461681 AATACACTAATTAATCTAAAT-CCTAAACTCTAACTTAACACTAAATTTCTAAACCCTAAATCCC
64 AACACACTAATTAATCTAAATCCCTAAACTCTAACCTAACACCAAATTTATAAACCCTAAATCCC
*
45461745 TAACTCTTAACATCTAACCCCTAACCTAA-CCCTTAA
129 TAACTCTTAACATCTAACCCATAACCTAATCCC-TAA
*
45461781 CCCTTAACCCATAAACCTTAAA
1 CCCTGAACCC-TAAACCTTAAA
45461803 TCACATTAAC
Statistics
Matches: 167, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
163 10 0.06
164 87 0.52
165 70 0.42
ACGTcount: A:0.40, C:0.32, G:0.01, T:0.28
Consensus pattern (164 bp):
CCCTGAACCCTAAACCTTAAACCCTAACCCCTAATCCCTAAACCTTATTTAATATATAATTAAAA
CACACTAATTAATCTAAATCCCTAAACTCTAACCTAACACCAAATTTATAAACCCTAAATCCCTA
ACTCTTAACATCTAACCCATAACCTAATCCCTAA
Found at i:45461843 original size:14 final size:15
Alignment explanation
Indices: 45461824--45461856 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
45461814 CTTAAACCAG
45461824 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
45461838 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
45461853 AATC
1 AATC
45461857 TATAAAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:45463788 original size:152 final size:151
Alignment explanation
Indices: 45463322--45463801 Score: 629
Period size: 153 Copynumber: 3.2 Consensus size: 151
45463312 NNNNNNNNNN
* **
45463322 TAGTACATTATATTTGAAATTTAAATAAATTTAGTGTGTTTTTTAAATAAA-TTAAAAAAACCCT
1 TAGTACATTATGTTTGAAATTTAAATAAATTTAGCATGTTTTTTAAATAAATTTAAAAAAACCCT
* *
45463386 TATTTCGGCCCTTTGCTCGTATTTTTTCCCGAATTTTATTACTTTCAATAAAAATATATTATTTT
66 TATTTCGGCCCTTT-CTTGTATTTTTTCCCTAATTTTATTACTTT--A-AAAAATATATTATTTT
45463451 CGT-ATTTTATTATTTTACATTATTT
127 C-TAATTTTATTATTTTACATTATTT
* * *
45463476 TAGTACATTATGTTTGAAATGTATTAAT-TATTT--C-TGTTTTTT--TTAAATTTAGTAAAAAA
1 TAGTACATTATGTTTGAAAT-T-TAAATAAATTTAGCATGTTTTTTAAATAAATTTA--AAAAAA
* * * *
45463535 CCCTAACTTCGGCCATTTGTTCGTATTTTTTCCCTAATTTTATTACTTTTAAAAAATATATTATT
62 CCCTTATTTCGGCCCTTTCTT-GTATTTTTTCCCTAATTTTATTAC-TTTAAAAAATATATTATT
45463600 TTCTAATTTTATTATTTTACATTATTT
125 TTCTAATTTTATTATTTTACATTATTT
45463627 TAGTACATTATGTTTGAAATTTAAATAAATTTAGCAT-TTTTTTAAATAAATTTTAAAAAAACCC
1 TAGTACATTATGTTTGAAATTTAAATAAATTTAGCATGTTTTTTAAATAAA-TTTAAAAAAACCC
**
45463691 TTATTTCGGCCCTTTACTTGTATTTTCCCCCTAATTTTATTACTTTAAAAAATATCA-TATTTTC
65 TTATTTCGGCCCTTT-CTTGTATTTTTTCCCTAATTTTATTACTTTAAAAAATAT-ATTATTTTC
45463755 TAATTTTATTATTTTACATTATTT
128 TAATTTTATTATTTTACATTATTT
*
45463779 CAGTACATTATGTTTGAAATTTA
1 TAGTACATTATGTTTGAAATTTA
45463802 TTAATTTAGT
Statistics
Matches: 288, Mismatches: 21, Indels: 36
0.83 0.06 0.10
Matches are distributed among these distances:
149 4 0.01
150 10 0.03
151 62 0.22
152 82 0.28
153 89 0.31
154 28 0.10
155 9 0.03
156 4 0.01
ACGTcount: A:0.32, C:0.11, G:0.06, T:0.50
Consensus pattern (151 bp):
TAGTACATTATGTTTGAAATTTAAATAAATTTAGCATGTTTTTTAAATAAATTTAAAAAAACCCT
TATTTCGGCCCTTTCTTGTATTTTTTCCCTAATTTTATTACTTTAAAAAATATATTATTTTCTAA
TTTTATTATTTTACATTATTT
Found at i:45464041 original size:9 final size:10
Alignment explanation
Indices: 45464027--45464184 Score: 89
Period size: 10 Copynumber: 16.0 Consensus size: 10
45464017 AAAAATTACC
45464027 TTCTTT-TTT
1 TTCTTTCTTT
45464036 TTCTTTCTTT
1 TTCTTTCTTT
* *
45464046 TTCCTTCCTT
1 TTCTTTCTTT
*
45464056 CTCTCTTCTTCT
1 TTCT-TTCTT-T
*
45464068 CCTCCTTTCTTT
1 --TTCTTTCTTT
*
45464080 TTCTTTCTTC
1 TTCTTTCTTT
* *
45464090 TCCTTTCCTT
1 TTCTTTCTTT
45464100 TTCTTTC--T
1 TTCTTTCTTT
45464108 TTCTTTCTTT
1 TTCTTTCTTT
45464118 TTC-TTC---
1 TTCTTTCTTT
* *
45464124 TCCTTTCCTT
1 TTCTTTCTTT
45464134 TTCTTTCTTT
1 TTCTTTCTTT
*
45464144 CTT-TTTTTTT
1 -TTCTTTCTTT
*
45464154 TTCTTCTCATT
1 TTCTT-TCTTT
* *
45464165 TCCTTTCCTT
1 TTCTTTCTTT
45464175 TTCTTTCTTT
1 TTCTTTCTTT
45464185 CTTTCTTCTC
Statistics
Matches: 112, Mismatches: 23, Indels: 27
0.69 0.14 0.17
Matches are distributed among these distances:
6 2 0.02
7 3 0.03
8 8 0.07
9 11 0.10
10 66 0.59
11 13 0.12
12 2 0.02
13 5 0.04
14 2 0.02
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.70
Consensus pattern (10 bp):
TTCTTTCTTT
Found at i:45464073 original size:23 final size:22
Alignment explanation
Indices: 45464047--45464104 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 22
45464037 TCTTTCTTTT
45464047 TCCTTCCTTCTCTCTTCTTCTCC
1 TCCTTCCTT-TCTCTTCTTCTCC
* *
45464070 TCCTTTCTTTTTCTTTCTTCTCC
1 TCCTTCCTTTCTC-TTCTTCTCC
45464093 T--TTCCTTT-TCTT
1 TCCTTCCTTTCTCTT
45464105 TCTTTCTTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 2 0.06
20 2 0.06
21 6 0.19
22 3 0.10
23 18 0.58
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (22 bp):
TCCTTCCTTTCTCTTCTTCTCC
Found at i:45464086 original size:4 final size:4
Alignment explanation
Indices: 45464079--45464191 Score: 77
Period size: 4 Copynumber: 25.5 Consensus size: 4
45464069 CTCCTTTCTT
45464079 TTTC TTTC TTCTCC TTTCC TTTTC TTTC TTTC TTTC -TT- TTTC TTCTCC
1 TTTC TTTC TT-T-C TTT-C -TTTC TTTC TTTC TTTC TTTC TTTC TT-T-C
* *
45464127 TTTCC TTTTC TTTC TTTC TTTT TTTT TTTC TTCTC ATTTCC TTTCC TTTTC
1 TTT-C -TTTC TTTC TTTC TTTC TTTC TTTC TT-TC -TTT-C TTT-C -TTTC
45464178 TTTC TTTC TTTC TT
1 TTTC TTTC TTTC TT
45464192 CTCATTTCCC
Statistics
Matches: 95, Mismatches: 2, Indels: 24
0.79 0.02 0.20
Matches are distributed among these distances:
3 4 0.04
4 54 0.57
5 19 0.20
6 18 0.19
ACGTcount: A:0.01, C:0.27, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTC
Found at i:45464110 original size:34 final size:34
Alignment explanation
Indices: 45464029--45464200 Score: 174
Period size: 34 Copynumber: 5.0 Consensus size: 34
45464019 AAATTACCTT
* *
45464029 CTTTTTTTTCTTTCTTTTTCCTTCCTTCT-CTCTT-
1 CTTTTCTTTCTTTCTTTTT-CTTTCTTCTCCT-TTC
* * *
45464063 CTTCTCCTCCTTTCTTTTTCTTTCTTCTCCTTTC
1 CTTTTCTTTCTTTCTTTTTCTTTCTTCTCCTTTC
45464097 CTTTTCTTTCTTTCTTTCTT-TTTCTTCTCCTTTC
1 CTTTTCTTTCTTTCTTT-TTCTTTCTTCTCCTTTC
* *
45464131 CTTTTCTTTCTTTCTTTTTTTTTTTCTTCTCATTTC
1 CTTTTCTTTCTTTC--TTTTTCTTTCTTCTCCTTTC
* *
45464167 CTTTCCTTTTCTTTC--TTTCTTTCTTCTCATTTC
1 CTTTTC-TTTCTTTCTTTTTCTTTCTTCTCCTTTC
45464200 C
1 C
45464201 CTCTCCTTCT
Statistics
Matches: 120, Mismatches: 11, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
33 28 0.23
34 59 0.49
35 4 0.03
36 21 0.17
37 8 0.07
ACGTcount: A:0.01, C:0.30, G:0.00, T:0.69
Consensus pattern (34 bp):
CTTTTCTTTCTTTCTTTTTCTTTCTTCTCCTTTC
Found at i:45464127 original size:54 final size:53
Alignment explanation
Indices: 45464038--45464200 Score: 149
Period size: 54 Copynumber: 3.1 Consensus size: 53
45464028 TCTTTTTTTT
* * * * * *
45464038 CTTTCTTTTTCCTTCCTTCTCTCTTCTTCTCCTCCTTTCTTTTTCTTTCTTCTC
1 CTTTCCTTTTCTTTCTTTCTTTCTTTTTCTTCTCCTTTC-TTTTCTTTCTTCTC
45464092 CTTTCCTTTTCTTTCTTTCTTTCTTTTTCTTCTCCTTTCCTTTTCTTTCTT-T-
1 CTTTCCTTTTCTTTCTTTCTTTCTTTTTCTTCTCCTTT-CTTTTCTTTCTTCTC
* * * *
45464144 CTTT--TTTTTTTTCTTCTCATTTCCTTTCCTT-TTCTTTC-TTTCTTTCTTCTC
1 CTTTCCTTTTCTTTCTT-TC-TTTCTTTTTCTTCTCCTTTCTTTTCTTTCTTCTC
*
45464195 ATTTCC
1 CTTTCC
45464201 CTCTCCTTCT
Statistics
Matches: 91, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
49 10 0.11
50 12 0.13
51 10 0.11
52 14 0.15
53 1 0.01
54 43 0.47
55 1 0.01
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.67
Consensus pattern (53 bp):
CTTTCCTTTTCTTTCTTTCTTTCTTTTTCTTCTCCTTTCTTTTCTTTCTTCTC
Found at i:45465895 original size:41 final size:41
Alignment explanation
Indices: 45465850--45465969 Score: 204
Period size: 41 Copynumber: 2.9 Consensus size: 41
45465840 ACTGGCACTT
*
45465850 AGCCTGCTAGACATAAAGTCTGAAATGTTTCACCGGCGTCA
1 AGCCTGCTAGACATAAAGTCTGAAATGTTTCACCGGCATCA
*
45465891 AGCCTGCTAGACATAAAGTCTGAAATATTTCACCGGCATCA
1 AGCCTGCTAGACATAAAGTCTGAAATGTTTCACCGGCATCA
* *
45465932 AGCCTGCTAGACTTAAAGTCTAAAATGTTTCACCGGCA
1 AGCCTGCTAGACATAAAGTCTGAAATGTTTCACCGGCA
45465970 GTAAACCTGA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (41 bp):
AGCCTGCTAGACATAAAGTCTGAAATGTTTCACCGGCATCA
Found at i:45469052 original size:15 final size:16
Alignment explanation
Indices: 45469032--45469065 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
45469022 AATCTATTAA
45469032 AAATTATAAAAAT-AT
1 AAATTATAAAAATGAT
*
45469047 AAATTATTAAAATGAT
1 AAATTATAAAAATGAT
45469063 AAA
1 AAA
45469066 ATTACATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (16 bp):
AAATTATAAAAATGAT
Found at i:45469518 original size:17 final size:18
Alignment explanation
Indices: 45469496--45469530 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
45469486 CAAAAAGAGT
45469496 GAAAAAC-GAGCAAAAAA
1 GAAAAACGGAGCAAAAAA
45469513 GAAAAACTGGAGCAAAAA
1 GAAAAAC-GGAGCAAAAA
45469531 CAAGAGCCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
19 9 0.56
ACGTcount: A:0.66, C:0.11, G:0.20, T:0.03
Consensus pattern (18 bp):
GAAAAACGGAGCAAAAAA
Found at i:45471135 original size:9 final size:9
Alignment explanation
Indices: 45471123--45471172 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
45471113 TTAAATATTT
45471123 TTTTTATAA
1 TTTTTATAA
*
45471132 TTTTCAGTAA
1 TTTTTA-TAA
45471142 --TTTATAA
1 TTTTTATAA
45471149 TTTTTATAA
1 TTTTTATAA
45471158 TTTTTA-ATA
1 TTTTTATA-A
45471167 TTTTTA
1 TTTTTA
45471173 ATTTTAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
7 3 0.09
8 4 0.11
9 25 0.71
10 3 0.09
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:45471147 original size:17 final size:16
Alignment explanation
Indices: 45471125--45471165 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
45471115 AAATATTTTT
45471125 TTTATAATTTTCAGTAA
1 TTTATAATTTTCA-TAA
*
45471142 TTTATAATTTTTATAA
1 TTTATAATTTTCATAA
*
45471158 TTTTTAAT
1 TTTATAAT
45471166 ATTTTTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (16 bp):
TTTATAATTTTCATAA
Found at i:45471160 original size:16 final size:16
Alignment explanation
Indices: 45471125--45471181 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
45471115 AAATATTTTT
*
45471125 TTTATAATTTTCAGTAA
1 TTTATAATTTTTA-TAA
45471142 TTTATAATTTTTATAA
1 TTTATAATTTTTATAA
*
45471158 TTTTTAATATTTT-TAA
1 TTTATAAT-TTTTATAA
45471174 TTT-TAATT
1 TTTATAATT
45471182 AATTACTAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
14 1 0.03
15 4 0.11
16 16 0.43
17 16 0.43
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (16 bp):
TTTATAATTTTTATAA
Found at i:45478680 original size:19 final size:19
Alignment explanation
Indices: 45478634--45478674 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
45478624 ACACTCCTTT
*
45478634 AATTACAATATTCATACAA
1 AATTATAATATTCATACAA
45478653 AATTATAATATTCATACAA
1 AATTATAATATTCATACAA
45478672 AAT
1 AAT
45478675 ACTAATCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (19 bp):
AATTATAATATTCATACAA
Found at i:45483741 original size:32 final size:32
Alignment explanation
Indices: 45483705--45483770 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
45483695 TAGCCTTGTA
45483705 TCGAACTTCATTTTTACCAGGAAATCCTTCCT
1 TCGAACTTCATTTTTACCAGGAAATCCTTCCT
45483737 TCGAACTTCATTTTTACCAGGAAATCCTTCCT
1 TCGAACTTCATTTTTACCAGGAAATCCTTCCT
45483769 TC
1 TC
45483771 TTTGCATATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.24, C:0.29, G:0.09, T:0.38
Consensus pattern (32 bp):
TCGAACTTCATTTTTACCAGGAAATCCTTCCT
Found at i:45500589 original size:50 final size:50
Alignment explanation
Indices: 45500525--45500619 Score: 147
Period size: 50 Copynumber: 1.9 Consensus size: 50
45500515 TAGTTCTTTT
45500525 ATTTAATTTGATTGATTTTACAATAGAAAAATTCT-TTTATCAAAATGTTG
1 ATTTAATTTGATTGATTTTACAATAGAAAAATTCTCTTT-TCAAAATGTTG
* * *
45500575 ATTTGATTTGATTGATTTTACAATTGAAAATTTCTCTTTTCAAAA
1 ATTTAATTTGATTGATTTTACAATAGAAAAATTCTCTTTTCAAAA
45500620 CGTAAAATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
50 38 0.93
51 3 0.07
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.47
Consensus pattern (50 bp):
ATTTAATTTGATTGATTTTACAATAGAAAAATTCTCTTTTCAAAATGTTG
Found at i:45501439 original size:29 final size:27
Alignment explanation
Indices: 45501399--45501466 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
45501389 GGCCAATGAA
45501399 TAAAAAATATTAAATTTTTT-TCTTTTT
1 TAAAAAATATTAAATTTTTTAT-TTTTT
45501426 TGAATAAAATATT--ATTTTTTATTTTTT
1 T-AA-AAAATATTAAATTTTTTATTTTTT
45501453 TAAAAAA-ATTAAAT
1 TAAAAAATATTAAAT
45501467 AAAAATATGG
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
24 3 0.08
25 4 0.11
26 4 0.11
27 14 0.39
28 3 0.08
29 8 0.22
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (27 bp):
TAAAAAATATTAAATTTTTTATTTTTT
Found at i:45501601 original size:21 final size:19
Alignment explanation
Indices: 45501573--45501898 Score: 154
Period size: 19 Copynumber: 16.3 Consensus size: 19
45501563 GCGCCAATGG
*
45501573 GTAATTTTGTATGTATATT
1 GTAATTTTGTATGAATATT
45501592 GTAACTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
45501613 GTAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
* *
45501632 ATAATTATTTTAT-AACTAATTTT
1 GTAATT-TTGTATGAA-T-A--TT
***
45501655 GT-ATTTATAGT-TTTTTATT
1 GTAATTT-T-GTATGAATATT
45501674 AGT-ATTTTGTATGAATATT
1 -GTAATTTTGTATGAATATT
*
45501693 GTAATTTTATATGAATATT
1 GTAATTTTGTATGAATATT
* * *
45501712 GTAATTATTTTTTAATTAATTTT
1 GT-A--ATTTTGT-ATGAATATT
* * *
45501735 GT-ATTTATAGTTTTGGAT-TA
1 GTAATTT-T-G-TATGAATATT
45501755 GT-ATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
45501773 GTAATTTTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT
45501794 AGT-ATTTTGTATGAATATT
1 -GTAATTTTGTATGAATATT
*
45501813 GTAATTATTTTAT-AATTAATTTT
1 GTAATT-TTGTATGAA-T-A--TT
***
45501836 GT-A-TTTGTAGTTTTTGATT
1 GTAATTTTGTA-TGAAT-ATT
45501855 AGT-ATTTTGTATGAATATT
1 -GTAATTTTGTATGAATATT
*
45501874 ATAATTTTGTATGAATATT
1 GTAATTTTGTATGAATATT
45501893 GTAATT
1 GTAATT
45501899 AGTTTATAAT
Statistics
Matches: 239, Mismatches: 32, Indels: 72
0.70 0.09 0.21
Matches are distributed among these distances:
17 5 0.02
18 11 0.05
19 103 0.43
20 36 0.15
21 51 0.21
22 16 0.07
23 17 0.07
ACGTcount: A:0.30, C:0.01, G:0.13, T:0.57
Consensus pattern (19 bp):
GTAATTTTGTATGAATATT
Found at i:45501631 original size:40 final size:37
Alignment explanation
Indices: 45501573--45501898 Score: 146
Period size: 40 Copynumber: 8.2 Consensus size: 37
45501563 GCGCCAATGG
*
45501573 GTAATTTTGTATGTATATTGTAACTTTTTGTATGAATATT
1 GTAATTTTGTATGAATATTGT-A--TTTTGTATGAATATT
* *
45501613 GTAATTTTGTATGAATATTATAATTATTTTAT-AACTAATTTT
1 GTAATTTTGTATGAATATTGT-ATT-TTGTATGAA-T-A--TT
***
45501655 GT-ATTTATAGT-TTTTTATTAGTATTTTGTATGAATATT
1 GTAATTT-T-GTATGAATATT-GTATTTTGTATGAATATT
* * * *
45501693 GTAATTTTATATGAATATTGTAATTATTTTTTAATTAATTTT
1 GTAATTTTGTATGAATATTG----TATTTTGT-ATGAATATT
* * *
45501735 GT-ATTTATAGTTTTGGAT-TAGTATTTTGTATGAATATT
1 GTAATTT-T-G-TATGAATATTGTATTTTGTATGAATATT
45501773 GTAATTTTTTGTATGAATATTAGTATTTTGTATGAATATT
1 GTAA--TTTTGTATGAATATT-GTATTTTGTATGAATATT
* ***
45501813 GTAATTATTTTAT-AATTAATTTTGTA-TTTGTAGTTTTTGATT
1 GTAATT-TTGTATGAA-T-A--TTGTATTTTGTA-TGAAT-ATT
*
45501855 AGT-ATTTTGTATGAATATTATAATTTTGTATGAATATT
1 -GTAATTTTGTATGAATATTGT-ATTTTGTATGAATATT
45501893 GTAATT
1 GTAATT
45501899 AGTTTATAAT
Statistics
Matches: 216, Mismatches: 34, Indels: 74
0.67 0.10 0.23
Matches are distributed among these distances:
37 4 0.02
38 41 0.19
39 29 0.13
40 60 0.28
41 35 0.16
42 35 0.16
43 7 0.03
44 5 0.02
ACGTcount: A:0.30, C:0.01, G:0.13, T:0.57
Consensus pattern (37 bp):
GTAATTTTGTATGAATATTGTATTTTGTATGAATATT
Found at i:45501706 original size:80 final size:80
Alignment explanation
Indices: 45501598--45502100 Score: 466
Period size: 80 Copynumber: 6.3 Consensus size: 80
45501588 TATTGTAACT
*
45501598 TTTTGTATGAATATTGTAATTTTGTATGAATATTATAATTATTTTATAACTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTATAATTATTTTATAATTAATTTTGTATTTAT
*
45501663 AGTTTTTTATTAGTA
66 AGTTTTTGATTAGTA
* * *
45501678 TTTTGTATGAATATTGTAATTTTATATGAATATTGTAATTATTTTTTAATTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTATAATTATTTTATAATTAATTTTGTATTTAT
*
45501743 AGTTTTGGATTAGTA
66 AGTTTTTGATTAGTA
* * * * *
45501758 TTTTGTATGAATATTGTAATTTTTTGTATGAATA-T-T-AGTATTTTGT-ATGAATATTGTAATT
1 TTTTGTATGAATATTGTAA--TTTTGTATGAATATTATAATTATTTTATAATTAATTTTGTATTT
* *
45501819 AT--TTTATAATTA--A
64 ATAGTTTTTGATTAGTA
* * *
45501832 TTTTGTATTTGTAGTTTTTGATTAGTATTTTGTATGAATATTATAATT-TTGTATGAA-T-A--T
1 TTTTGTA--TG-A-ATATTG--TA--ATTTTGTATGAATATTATAATTATTTTAT-AATTAATTT
* * *
45501892 TGTA-AT-TAGTTTATAATTA--A
57 TGTATTTATAGTTTTTGATTAGTA
* * *
45501912 TTTTGTATTTATAGTTTTTGATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAATTTT
1 TTTTGTA-TGA-A--TATTG--TA--ATTTTGTATGAATATTATAATTATTTTATAATTAATTTT
*
45501977 GTATTTGTAGTTTTTGATTAGTA
58 GTATTTATAGTTTTTGATTAGTA
* * *
45502000 TTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTAGTTTATAATTAATTTTGTATTTAT
1 TTTTGTATGAATATTGTAATTTTGTATGAATATTATAATTATTTTATAATTAATTTTGTATTTAT
45502065 AGTTTTTGATTA-TAA
66 AGTTTTTGATTAGT-A
45502080 TTTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
45502101 ATTTTATAAT
Statistics
Matches: 358, Mismatches: 36, Indels: 58
0.79 0.08 0.13
Matches are distributed among these distances:
74 8 0.02
76 9 0.03
77 1 0.00
78 20 0.06
79 12 0.03
80 244 0.68
81 8 0.02
82 22 0.06
83 2 0.01
84 9 0.03
85 1 0.00
86 12 0.03
87 2 0.01
88 8 0.02
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.57
Consensus pattern (80 bp):
TTTTGTATGAATATTGTAATTTTGTATGAATATTATAATTATTTTATAATTAATTTTGTATTTAT
AGTTTTTGATTAGTA
Found at i:45501785 original size:101 final size:99
Alignment explanation
Indices: 45501677--45501898 Score: 365
Period size: 101 Copynumber: 2.2 Consensus size: 99
45501667 TTTTATTAGT
*
45501677 ATTTTGTATGAATATTGTAATTTTATATGAATATTGTAATTATTTTTTAATTAATTTTGTATTTA
1 ATTTTGTATGAATATTGTAATTTTATATGAATATTGTAATTATTTTATAATTAATTTTGTATTTA
*
45501742 TAGTTTTGGATTAGTATTTTGTATGAATATTGTA
66 TAGTTTTGGATTAGTATTTTGTATGAATATTATA
*
45501776 ATTTTTTGTATGAATATTAGT-ATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTAT
1 A--TTTTGTATGAATATT-GTAATTTTATATGAATATTGTAATTATTTTATAATTAATTTTGTAT
* *
45501840 TTGTAGTTTTTGATTAGTATTTTGTATGAATATTATA
63 TTATAGTTTTGGATTAGTATTTTGTATGAATATTATA
45501877 ATTTTGTATGAATATTGTAATT
1 ATTTTGTATGAATATTGTAATT
45501899 AGTTTATAAT
Statistics
Matches: 114, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
98 2 0.02
99 19 0.17
101 91 0.80
102 2 0.02
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (99 bp):
ATTTTGTATGAATATTGTAATTTTATATGAATATTGTAATTATTTTATAATTAATTTTGTATTTA
TAGTTTTGGATTAGTATTTTGTATGAATATTATA
Found at i:45501918 original size:34 final size:33
Alignment explanation
Indices: 45501875--45501980 Score: 107
Period size: 34 Copynumber: 3.3 Consensus size: 33
45501865 ATGAATATTA
45501875 TAATTTTGTATGAATATTGTAATTAGTTTATAAT
1 TAATTTTGTATGAATATTGTAATTA-TTTATAAT
* * * * *
45501909 TAATTTTGTAT--TTATAGT--TT-TTGATTAG
1 TAATTTTGTATGAATATTGTAATTATTTATAAT
45501937 T-ATTTTGTATGAATATTGTAATTATTTTATAAT
1 TAATTTTGTATGAATATTGTAATTA-TTTATAAT
45501970 TAATTTTGTAT
1 TAATTTTGTAT
45501981 TTGTAGTTTT
Statistics
Matches: 55, Mismatches: 10, Indels: 14
0.70 0.13 0.18
Matches are distributed among these distances:
27 9 0.16
28 6 0.11
29 5 0.09
30 2 0.04
31 2 0.04
32 5 0.09
33 6 0.11
34 20 0.36
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.58
Consensus pattern (33 bp):
TAATTTTGTATGAATATTGTAATTATTTATAAT
Found at i:45501947 original size:61 final size:60
Alignment explanation
Indices: 45501871--45502020 Score: 246
Period size: 61 Copynumber: 2.5 Consensus size: 60
45501861 TTGTATGAAT
*
45501871 ATTATAATTTTGTATGAATATTGTAATTAGTTTATAATTAATTTTGTATTTATAGTTTTTG
1 ATTAT-ATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTG
*
45501932 ATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTGTAGTTTTTG
1 ATTA-TATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTG
*
45501993 ATTAGTATTTTGTATGAATATTATAATT
1 ATTA-TATTTTGTATGAATATTGTAATT
45502021 TTGTATGAAT
Statistics
Matches: 85, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
61 84 0.99
62 1 0.01
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.57
Consensus pattern (60 bp):
ATTATATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTG
Found at i:45501951 original size:141 final size:141
Alignment explanation
Indices: 45501791--45502341 Score: 978
Period size: 141 Copynumber: 3.9 Consensus size: 141
45501781 TTGTATGAAT
45501791 ATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTGTAGTTTTTGATTA
1 ATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTGTAGTTTTTGATTA
45501856 GTATTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTAGTTTATAATTAATTTTGTATT
66 GTATTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTAGTTTATAATTAATTTTGTATT
45501921 TATAGTTTTTG
131 TATAGTTTTTG
45501932 ATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTGTAGTTTTTGATTA
1 ATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTGTAGTTTTTGATTA
45501997 GTATTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTAGTTTATAATTAATTTTGTATT
66 GTATTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTAGTTTATAATTAATTTTGTATT
45502062 TATAGTTTTTG
131 TATAGTTTTTG
45502073 ATTA-TAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTGTAGTTTTTGATT
1 ATTAGT-ATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTGTAGTTTTTGATT
*
45502137 AGTATTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTAT
65 AGTATTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTAGTTTATAATTAATTTTGTAT
45502202 TTATAGTTTTTG
130 TTATAGTTTTTG
* * *
45502214 ATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAATCTTGTATTTATAGTTTTGGATTA
1 ATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTGTAGTTTTTGATTA
* * * *
45502279 ATATTTTGTATGAACATTGTAATATTGTTTGTATGAATATTGTAATTATTTTATAATTAATTT
66 GTATTTTGTATGAATA-T-T-ATAAT-TTTGTATGAATATTGTAATTAGTTTATAATTAATTT
45502342 GTTAGTAATT
Statistics
Matches: 397, Mismatches: 7, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
140 1 0.00
141 353 0.89
142 2 0.01
143 1 0.00
144 4 0.01
145 36 0.09
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.57
Consensus pattern (141 bp):
ATTAGTATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTGTAGTTTTTGATTA
GTATTTTGTATGAATATTATAATTTTGTATGAATATTGTAATTAGTTTATAATTAATTTTGTATT
TATAGTTTTTG
Found at i:45502002 original size:27 final size:27
Alignment explanation
Indices: 45501911--45502007 Score: 86
Period size: 27 Copynumber: 3.3 Consensus size: 27
45501901 TTTATAATTA
*
45501911 ATTTTGTATTTATAGTTTTTGATTAGT
1 ATTTTGTATTTGTAGTTTTTGATTAGT
* * * *
45501938 ATTTTGTATGAATATTGTAATTATTTTATAATT
1 ATTTTG--T--AT-TTGTAGTT-TTTGATTAGT
45501971 AATTTTGTATTTGTAGTTTTTGATTAGT
1 -ATTTTGTATTTGTAGTTTTTGATTAGT
45501999 ATTTTGTAT
1 ATTTTGTAT
45502008 GAATATTATA
Statistics
Matches: 54, Mismatches: 9, Indels: 14
0.70 0.12 0.18
Matches are distributed among these distances:
27 15 0.28
28 7 0.13
29 8 0.15
30 2 0.04
31 2 0.04
32 7 0.13
33 7 0.13
34 6 0.11
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (27 bp):
ATTTTGTATTTGTAGTTTTTGATTAGT
Found at i:45502021 original size:19 final size:19
Alignment explanation
Indices: 45501999--45502039 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
45501989 TTTGATTAGT
45501999 ATTTTGTATGAATATTATA
1 ATTTTGTATGAATATTATA
*
45502018 ATTTTGTATGAATATTGTA
1 ATTTTGTATGAATATTATA
45502037 ATT
1 ATT
45502040 AGTTTATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (19 bp):
ATTTTGTATGAATATTATA
Found at i:45502059 original size:34 final size:33
Alignment explanation
Indices: 45502016--45502121 Score: 116
Period size: 34 Copynumber: 3.3 Consensus size: 33
45502006 ATGAATATTA
45502016 TAATTTTGTATGAATATTGTAATTAGTTTATAAT
1 TAATTTTGTATGAATATTGTAATTA-TTTATAAT
* * * *
45502050 TAATTTTGTAT--TTATAGT--TT-TTGATTA-
1 TAATTTTGTATGAATATTGTAATTATTTATAAT
45502077 TAATTTTGTATGAATATTGTAATTATTTTATAAT
1 TAATTTTGTATGAATATTGTAATTA-TTTATAAT
45502111 TAATTTTGTAT
1 TAATTTTGTAT
45502122 TTGTAGTTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
27 11 0.19
28 5 0.09
29 5 0.09
30 2 0.04
31 2 0.04
32 5 0.09
33 5 0.09
34 22 0.39
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (33 bp):
TAATTTTGTATGAATATTGTAATTATTTATAAT
Found at i:45502077 original size:61 final size:61
Alignment explanation
Indices: 45502012--45502161 Score: 257
Period size: 61 Copynumber: 2.5 Consensus size: 61
45502002 TTGTATGAAT
45502012 ATTATAATTTTGTATGAATATTGTAATTAGTTTATAATTAATTTTGTATTTATAGTTTTTG
1 ATTATAATTTTGTATGAATATTGTAATTAGTTTATAATTAATTTTGTATTTATAGTTTTTG
* *
45502073 ATTATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTGTAGTTTTTG
1 ATTATAATTTTGTATGAATATTGTAATTAGTTTATAATTAATTTTGTATTTATAGTTTTTG
*
45502134 ATTAGT-ATTTTGTATGAATATTATAATT
1 ATTA-TAATTTTGTATGAATATTGTAATT
45502162 TTGTATGAAT
Statistics
Matches: 85, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
61 84 0.99
62 1 0.01
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.57
Consensus pattern (61 bp):
ATTATAATTTTGTATGAATATTGTAATTAGTTTATAATTAATTTTGTATTTATAGTTTTTG
Found at i:45502157 original size:80 final size:80
Alignment explanation
Indices: 45502073--45502241 Score: 320
Period size: 80 Copynumber: 2.1 Consensus size: 80
45502063 ATAGTTTTTG
*
45502073 ATTATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTGTAGTTTTTGATTA
1 ATTATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTA
45502138 GTATTTTGTATGAAT
66 GTATTTTGTATGAAT
45502153 ATTATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTA
1 ATTATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTA
45502218 GTATTTTGTATGAAT
66 GTATTTTGTATGAAT
*
45502233 ATTGTAATT
1 ATTATAATT
45502242 ATTTTATAAT
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 87 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.57
Consensus pattern (80 bp):
ATTATAATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTA
GTATTTTGTATGAAT
Found at i:45502162 original size:19 final size:19
Alignment explanation
Indices: 45502140--45502180 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
45502130 TTTGATTAGT
45502140 ATTTTGTATGAATATTATA
1 ATTTTGTATGAATATTATA
*
45502159 ATTTTGTATGAATATTGTA
1 ATTTTGTATGAATATTATA
45502178 ATT
1 ATT
45502181 ATTTTATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (19 bp):
ATTTTGTATGAATATTATA
Found at i:45502200 original size:34 final size:34
Alignment explanation
Indices: 45502157--45502262 Score: 109
Period size: 34 Copynumber: 3.3 Consensus size: 34
45502147 ATGAATATTA
45502157 TAATTTTGTATGAATATTGTAATTATTTTATAAT
1 TAATTTTGTATGAATATTGTAATTATTTTATAAT
* * * * *
45502191 TAATTTTG--T--AT-TTATAGTT-TTTGATTAG
1 TAATTTTGTATGAATATTGTAATTATTTTATAAT
45502219 T-ATTTTGTATGAATATTGTAATTATTTTATAAT
1 TAATTTTGTATGAATATTGTAATTATTTTATAAT
*
45502252 TAATCTTGTAT
1 TAATTTTGTAT
45502263 TTATAGTTTT
Statistics
Matches: 54, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
27 6 0.11
28 7 0.13
29 7 0.13
30 2 0.04
31 2 0.04
32 7 0.13
33 7 0.13
34 16 0.30
ACGTcount: A:0.31, C:0.01, G:0.10, T:0.58
Consensus pattern (34 bp):
TAATTTTGTATGAATATTGTAATTATTTTATAAT
Found at i:45502224 original size:61 final size:61
Alignment explanation
Indices: 45502159--45502301 Score: 250
Period size: 61 Copynumber: 2.3 Consensus size: 61
45502149 GAATATTATA
* * *
45502159 ATTTTGTATGAATATTGTAATTATTTTATAATTAATTTTGTATTTATAGTTTTTGATTAGT
1 ATTTTGTATGAATATTGTAATTATTTTATAATTAATCTTGTATTTATAGTTTTGGATTAAT
45502220 ATTTTGTATGAATATTGTAATTATTTTATAATTAATCTTGTATTTATAGTTTTGGATTAAT
1 ATTTTGTATGAATATTGTAATTATTTTATAATTAATCTTGTATTTATAGTTTTGGATTAAT
*
45502281 ATTTTGTATGAACATTGTAAT
1 ATTTTGTATGAATATTGTAAT
45502302 ATTGTTTGTA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 78 1.00
ACGTcount: A:0.31, C:0.01, G:0.12, T:0.56
Consensus pattern (61 bp):
ATTTTGTATGAATATTGTAATTATTTTATAATTAATCTTGTATTTATAGTTTTGGATTAAT
Found at i:45502302 original size:21 final size:21
Alignment explanation
Indices: 45502277--45502330 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 21
45502267 AGTTTTGGAT
45502277 TAATATTTTGTATGAACATTG
1 TAATATTTTGTATGAACATTG
*
45502298 TAATATTGTTTGTATGAATATTG
1 TAATA-T-TTTGTATGAACATTG
45502321 TAATTATTTT
1 TAA-TATTTT
45502331 ATAATTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 5 0.17
22 4 0.14
23 18 0.62
24 2 0.07
ACGTcount: A:0.31, C:0.02, G:0.13, T:0.54
Consensus pattern (21 bp):
TAATATTTTGTATGAACATTG
Found at i:45502408 original size:56 final size:59
Alignment explanation
Indices: 45502318--45502435 Score: 170
Period size: 56 Copynumber: 2.0 Consensus size: 59
45502308 TGTATGAATA
* * * *
45502318 TTGTAATTATTTTATAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGT
1 TTGTAATTATTTTATAA-TAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
45502378 TTGTAATTA-TTTA-AA-AATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
1 TTGTAATTATTTTATAATAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
45502434 TT
1 TT
45502436 AGATTAGTAT
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
56 39 0.72
58 2 0.04
59 4 0.07
60 9 0.17
ACGTcount: A:0.32, C:0.01, G:0.14, T:0.53
Consensus pattern (59 bp):
TTGTAATTATTTTATAATAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
Found at i:45502588 original size:15 final size:16
Alignment explanation
Indices: 45502552--45502588 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
45502542 CTCATTTAAT
45502552 TTTTATATAATGTAAC
1 TTTTATATAATGTAAC
*
45502568 TTTTATATTATGTAA-
1 TTTTATATAATGTAAC
45502583 TTTTAT
1 TTTTAT
45502589 TTGATTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (16 bp):
TTTTATATAATGTAAC
Found at i:45505591 original size:13 final size:13
Alignment explanation
Indices: 45505575--45505601 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
45505565 CTAAATTAGT
45505575 TTTACTAACCACC
1 TTTACTAACCACC
45505588 TTTACTAACCACC
1 TTTACTAACCACC
45505601 T
1 T
45505602 GTATAACACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.37, G:0.00, T:0.33
Consensus pattern (13 bp):
TTTACTAACCACC
Found at i:45507172 original size:23 final size:24
Alignment explanation
Indices: 45507146--45507195 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
45507136 AAGGTTGAAC
45507146 TTTTACTGTT-TTCTTCTT-TCTTT
1 TTTTACTGTTATT-TTCTTATCTTT
* *
45507169 TTTTATTGTTATTTTTTTATCTTT
1 TTTTACTGTTATTTTCTTATCTTT
45507193 TTT
1 TTT
45507196 ACAACTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.08, C:0.10, G:0.04, T:0.78
Consensus pattern (24 bp):
TTTTACTGTTATTTTCTTATCTTT
Found at i:45507716 original size:19 final size:19
Alignment explanation
Indices: 45507630--45507722 Score: 62
Period size: 19 Copynumber: 4.8 Consensus size: 19
45507620 AACTCATTTT
* *
45507630 ATGTATTATTTAGTTAAAA
1 ATGTTTTATTTATTTAAAA
*
45507649 TTGTTTTA-TTATTTAAAA
1 ATGTTTTATTTATTTAAAA
* ** **
45507667 TTGTTTTACATATCTTTTAA
1 ATGTTTTATTTAT-TTAAAA
**
45507687 ATGCAACTTATTTATTTAAAA
1 ATG--TTTTATTTATTTAAAA
45507708 ATGTTTTATTTATTT
1 ATGTTTTATTTATTT
45507723 TTCGTTTCAA
Statistics
Matches: 55, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
18 17 0.31
19 19 0.35
20 6 0.11
21 7 0.13
22 6 0.11
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.56
Consensus pattern (19 bp):
ATGTTTTATTTATTTAAAA
Found at i:45510031 original size:24 final size:25
Alignment explanation
Indices: 45509989--45510041 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 25
45509979 TCTTTTTGCA
* * *
45509989 TTCATTCCATTCATCTGCATTACAT
1 TTCATTACATTCATCTGCATCAAAT
*
45510014 TTCATTACATT-ATTTGCATCAAAT
1 TTCATTACATTCATCTGCATCAAAT
45510038 TTCA
1 TTCA
45510042 CGAAAGAGCC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 14 0.58
25 10 0.42
ACGTcount: A:0.28, C:0.23, G:0.04, T:0.45
Consensus pattern (25 bp):
TTCATTACATTCATCTGCATCAAAT
Found at i:45513170 original size:137 final size:137
Alignment explanation
Indices: 45512924--45513333 Score: 804
Period size: 137 Copynumber: 3.0 Consensus size: 137
45512914 CGCCCCAGAT
45512924 AATTCTATGAGGAGCACCTGGTATTGAAAAGATTCTTCCCATACAAAAGGACTTCAAAAGAAAGT
1 AATTCTATGAGGAGCACCTGGTATTGAAAAGATTCTTCCCATACAAAAGGACTTCAAAAGAAAGT
45512989 GGATGCCAAACCGGGAAGGACCTTATGTGAAAGGCCTTATTTAGGAGAACGTCGGTATTGACCAA
66 GGATGCCAAACCGGGAAGGACCTTATGTGAAAGGCCTTATTTAGGAGAACGTCGGTATTGACCAA
45513054 GATGGAG
131 GATGGAG
45513061 AATTCTATGAGGAGCACCTGGTATTGAAAAGATTCTTCCCATACAAAAGGACTTCAAAAGAAAGT
1 AATTCTATGAGGAGCACCTGGTATTGAAAAGATTCTTCCCATACAAAAGGACTTCAAAAGAAAGT
45513126 GGATGCCAAACCGGGAAGGACCTTATGTGAAAGGCCTTATTTAGGAGAACGTCGGTATTGACCAA
66 GGATGCCAAACCGGGAAGGACCTTATGTGAAAGGCCTTATTTAGGAGAACGTCGGTATTGACCAA
45513191 GATGGAG
131 GATGGAG
45513198 AATTCTATGAGGAGCACCTGGTATTGAAAAGATTCTTCCCATACAAAAGGACTTCAAAAGAAAGT
1 AATTCTATGAGGAGCACCTGGTATTGAAAAGATTCTTCCCATACAAAAGGACTTCAAAAGAAAGT
45513263 GGATGCCAAACCGGGAAGGACCTTATGTGAAAGGCCTTATTT-GAGAGAACGTCGGTATTGACCA
66 GGATGCCAAACCGGGAAGGACCTTATGTGAAAGGCCTTATTTAG-GAGAACGTCGGTATTGACCA
45513327 AGATGGA
130 AGATGGA
45513334 TGGAAAGAAC
Statistics
Matches: 272, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
136 1 0.00
137 271 1.00
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (137 bp):
AATTCTATGAGGAGCACCTGGTATTGAAAAGATTCTTCCCATACAAAAGGACTTCAAAAGAAAGT
GGATGCCAAACCGGGAAGGACCTTATGTGAAAGGCCTTATTTAGGAGAACGTCGGTATTGACCAA
GATGGAG
Found at i:45514465 original size:50 final size:50
Alignment explanation
Indices: 45514410--45514982 Score: 364
Period size: 50 Copynumber: 11.5 Consensus size: 50
45514400 ATCTCTTTGG
* * * * * *
45514410 CATTGCAGTGGAGCAGATTGAAGCTACAATGACGAATCTTGCTTCCCCGA
1 CATTGCAATTGAGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
* * ** * *
45514460 CATTGCAATTGAAAAGATTGAAG-TCACAACGGTGAATCTTACTTCCCTGG
1 CATTGCAATTGAGAAGATTGAAGCT-ACGACGACGAATCTTACTTCCCCGA
** * * * * * * *
45514510 CGGTGCAGTGGAGTAGATTGAAGCTATGACGGC-AATCTTGCTTCTCCGA
1 CATTGCAATTGAGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
* * * * * * *
45514559 CATTGCAATTTAAAATATTGAAGCCACGACGGCGAATCTTACTTCCCTGG
1 CATTGCAATTGAGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
** * * *
45514609 CGGTGCAA-TGAAGCAGATTGAAGCTACGATGATGAATCTTACTTCCCCGA
1 CATTGCAATTG-AGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
* * * * * * * *
45514659 TATTGCAATTTAAAAGATTGAAGGTACGAGGGCGAATCTTACTTCCCTGG
1 CATTGCAATTGAGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
** * * *
45514709 CGGTGCAGTGGAGAAGATTGAAGCTACGACGACGAATCTTGCTTCCCCGA
1 CATTGCAATTGAGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
* * * * * *
45514759 CATTGCAATTTAAAAGATTGAAGCCACGACGGCGAATCTTACTTCCCTGG
1 CATTGCAATTGAGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
* * * * * * * * * * *
45514809 TAGTGCAGTAGAGCAGATTTAAGCTACAACGATGAATCTTGCTTCCTCAA
1 CATTGCAATTGAGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
* * * * *
45514859 CATTGCAATTAAGAAGATTGAAGCCATGAC-AGCGAATCTTACTTCCCTGG
1 CATTGCAATTGAGAAGATTGAAGCTACGACGA-CGAATCTTACTTCCCCGA
** * * * * * * *
45514909 CGGTGCAGTCGAGCAGATTGAAGCTACAAC-AGCAAATCTTACCTCCCCAA
1 CATTGCAATTGAGAAGATTGAAGCTACGACGA-CGAATCTTACTTCCCCGA
* *
45514959 CATTGCAATTAAAAAGATTGAAGC
1 CATTGCAATTGAGAAGATTGAAGC
45514983 AGCAACGGTG
Statistics
Matches: 378, Mismatches: 139, Indels: 12
0.71 0.26 0.02
Matches are distributed among these distances:
49 38 0.10
50 338 0.89
51 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (50 bp):
CATTGCAATTGAGAAGATTGAAGCTACGACGACGAATCTTACTTCCCCGA
Found at i:45514697 original size:100 final size:99
Alignment explanation
Indices: 45514413--45514982 Score: 709
Period size: 100 Copynumber: 5.7 Consensus size: 99
45514403 TCTTTGGCAT
* * * *
45514413 TGCAGTGGAGCAGATTGAAGCTACAATGACGAATCTTGCTTCCCCGACATTGCAATTGAAAAGAT
1 TGCAGTGAAGCAGATTGAAGCTACGACGA-GAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
* * *
45514478 TGAAGTCACAACGGTGAATCTTACTTCCCTGGCGG
65 TGAAGCCACGACGGCGAATCTTACTTCCCTGGCGG
* * * * *
45514513 TGCAGTGGAGTAGATTGAAGCTATGACG-GCAATCTTGCTTCTCCGACATTGCAATTTAAAATAT
1 TGCAGTGAAGCAGATTGAAGCTACGACGAG-AATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
45514577 TGAAGCCACGACGGCGAATCTTACTTCCCTGGCGG
65 TGAAGCCACGACGGCGAATCTTACTTCCCTGGCGG
* * * *
45514612 TGCAATGAAGCAGATTGAAGCTACGATGATGAATCTTACTTCCCCGATATTGCAATTTAAAAGAT
1 TGCAGTGAAGCAGATTGAAGCTACGACGA-GAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
** *
45514677 TGAAGGTACGAGGGCGAATCTTACTTCCCTGGCGG
65 TGAAGCCACGACGGCGAATCTTACTTCCCTGGCGG
* *
45514712 TGCAGTGGAGAAGATTGAAGCTACGACGACGAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
1 TGCAGTGAAGCAGATTGAAGCTACGACGA-GAATCTTGCTTCCCCGACATTGCAATTTAAAAGAT
**
45514777 TGAAGCCACGACGGCGAATCTTACTTCCCTGGTAG
65 TGAAGCCACGACGGCGAATCTTACTTCCCTGGCGG
* * * *
45514812 TGCAGT-AGAGCAGATTTAAGCTACAACGATGAATCTTGCTTCCTCAACATTGCAA-TTAAGAAG
1 TGCAGTGA-AGCAGATTGAAGCTACGACGA-GAATCTTGCTTCCCCGACATTGCAATTTAA-AAG
* *
45514875 ATTGAAGCCATGACAGCGAATCTTACTTCCCTGGCGG
63 ATTGAAGCCACGACGGCGAATCTTACTTCCCTGGCGG
* * * * *
45514912 TGCAGTCG-AGCAGATTGAAGCTACAAC-AGCAAATCTTACCTCCCCAACATTGCAATTAAAAAG
1 TGCAGT-GAAGCAGATTGAAGCTACGACGAG--AATCTTGCTTCCCCGACATTGCAATTTAAAAG
45514975 ATTGAAGC
63 ATTGAAGC
45514983 AGCAACGGTG
Statistics
Matches: 410, Mismatches: 50, Indels: 20
0.85 0.10 0.04
Matches are distributed among these distances:
98 2 0.00
99 91 0.22
100 313 0.76
101 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (99 bp):
TGCAGTGAAGCAGATTGAAGCTACGACGAGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATT
GAAGCCACGACGGCGAATCTTACTTCCCTGGCGG
Found at i:45515086 original size:44 final size:44
Alignment explanation
Indices: 45515031--45515214 Score: 141
Period size: 44 Copynumber: 4.3 Consensus size: 44
45515021 CGACGAATCC
45515031 TATCTCCCTGAAGTTGCAGTGGAGCGA-ATTAAAACCATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGACATTAAAACCA-AGATCT
* * * *** *
45515075 TATCTCTCTGAAGTTGCAGTAGAGC-AGA-TCGCATCAAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGACATTAAAACCAAGATCT
* * ** *
45515116 TATCTCCCT-AAGTAGTAGTGGAGCAGACAAAAGAAACC-A-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGC-GACATTA-AAACCAAGATCT
* *
45515159 TATCTCCCTGAAGTTGCAGTGGAACG-GATTAAAACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGACATTAAAACCA-AGATCT
*
45515203 TATCTCTCTGAA
1 TATCTCCCTGAA
45515215 ATTGAAGTAG
Statistics
Matches: 105, Mismatches: 25, Indels: 20
0.70 0.17 0.13
Matches are distributed among these distances:
40 12 0.11
41 16 0.15
42 6 0.06
43 19 0.18
44 52 0.50
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGACATTAAAACCAAGATCT
Found at i:45515344 original size:132 final size:128
Alignment explanation
Indices: 45515031--45515346 Score: 332
Period size: 128 Copynumber: 2.4 Consensus size: 128
45515021 CGACGAATCC
** * * * * * *
45515031 TATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGCAGAACGGATTAAAACCACAGATCGTATCTCTCTGAAATTGAAGTA
* * * * **
45515096 GAGCAGATCGCATCAAGTCTTATCTCCCTAAGTAGTAGTGGAGCAGACAAAAGAAACCAATCC
66 GAGCAGATCGCATCAAGTCTTATCCCCCGAAGTAGCAGCGGAGCAGACAAAAGAAACCAATAA
** *
45515159 TATCTCCCTGAAGTTGCAGTGGAACGGATTAAAACCACAGATCTTATCTCTCTGAAATTGAAGTA
1 TATCTCCCTGAAGTTGCAGCAGAACGGATTAAAACCACAGATCGTATCTCTCTGAAATTGAAGTA
*
45515224 GAGCAGATCGCATCCAGTCTTATCGCCCCGAAGTTA-CAGCGGAGCAGACAAAAGAAACC-ATAA
66 GAGCAGATCGCATCAAGTCTTATC-CCCCGAAG-TAGCAGCGGAGCAGACAAAAGAAACCAAT-A
45515287 A
128 A
* * * * * *
45515288 TTTCGTCCTCCTGAAGTTGCGGCAGAGCGGATTGAAGCTAC-GAGTCGTATCTCTCTGAA
1 TATC-T-C-CCTGAAGTTGCAGCAGAACGGATTAAAACCACAGA-TCGTATCTCTCTGAA
45515347 GTTGTAGTGG
Statistics
Matches: 160, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
128 85 0.53
129 30 0.19
130 3 0.02
131 3 0.02
132 39 0.24
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (128 bp):
TATCTCCCTGAAGTTGCAGCAGAACGGATTAAAACCACAGATCGTATCTCTCTGAAATTGAAGTA
GAGCAGATCGCATCAAGTCTTATCCCCCGAAGTAGCAGCGGAGCAGACAAAAGAAACCAATAA
Found at i:45516055 original size:23 final size:24
Alignment explanation
Indices: 45516029--45516078 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
45516019 AAGGTTGAAC
45516029 TTTTACTGTT-TTCTTCTT-TCTTT
1 TTTTACTGTTATT-TTCTTATCTTT
* *
45516052 TTTTATTGTTATTTTTTTATCTTT
1 TTTTACTGTTATTTTCTTATCTTT
45516076 TTT
1 TTT
45516079 ACAACTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.08, C:0.10, G:0.04, T:0.78
Consensus pattern (24 bp):
TTTTACTGTTATTTTCTTATCTTT
Found at i:45516767 original size:26 final size:24
Alignment explanation
Indices: 45516738--45516818 Score: 74
Period size: 26 Copynumber: 3.2 Consensus size: 24
45516728 CTGTTTAGAT
45516738 TTTTTTATATTATTTCATTTAAACAG
1 TTTTTT-TATTATTT-ATTTAAACAG
* *
45516764 TTTTATTATTATTTATTTTAA-AG
1 TTTTTTTATTATTTATTTAAACAG
*
45516787 ATTTTTATGTATTATTTATATTAAACAA
1 -TTTTT-T-TATTATTTAT-TTAAACAG
45516815 TTTT
1 TTTT
45516819 AGTTTATATA
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
23 2 0.04
24 10 0.22
25 9 0.20
26 15 0.33
27 8 0.18
28 1 0.02
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (24 bp):
TTTTTTTATTATTTATTTAAACAG
Found at i:45516819 original size:26 final size:26
Alignment explanation
Indices: 45516745--45516833 Score: 96
Period size: 25 Copynumber: 3.5 Consensus size: 26
45516735 GATTTTTTTA
*
45516745 TATTATTTCAT-TTAAACAGTTTTAT-
1 TATTATTT-ATATTAAACAATTTTATG
* * *
45516770 TATTATTTATTTTAAAGATTTTTATG
1 TATTATTTATATTAAACAATTTTATG
45516796 TATTATTTATATTAAACAATTTTA-G
1 TATTATTTATATTAAACAATTTTATG
*
45516821 T-TTATATATATTA
1 TATTATTTATATTA
45516834 CTCTAAGCTT
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
24 13 0.23
25 22 0.39
26 21 0.38
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.57
Consensus pattern (26 bp):
TATTATTTATATTAAACAATTTTATG
Found at i:45517108 original size:19 final size:19
Alignment explanation
Indices: 45517022--45517114 Score: 62
Period size: 19 Copynumber: 4.8 Consensus size: 19
45517012 AACTCATTTT
* *
45517022 ATGTATTATTTAGTTAAAA
1 ATGTTTTATTTATTTAAAA
*
45517041 TTGTTTTA-TTATTTAAAA
1 ATGTTTTATTTATTTAAAA
* ** **
45517059 TTGTTTTACATATCTTTTAA
1 ATGTTTTATTTAT-TTAAAA
**
45517079 ATGCAACTTATTTATTTAAAA
1 ATG--TTTTATTTATTTAAAA
45517100 ATGTTTTATTTATTT
1 ATGTTTTATTTATTT
45517115 TTCNNNNNNN
Statistics
Matches: 55, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
18 17 0.31
19 19 0.35
20 6 0.11
21 7 0.13
22 6 0.11
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.56
Consensus pattern (19 bp):
ATGTTTTATTTATTTAAAA
Found at i:45521342 original size:18 final size:18
Alignment explanation
Indices: 45521309--45521343 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
45521299 AGGTATGTTT
* *
45521309 CCTAACCCTTATATGTAC
1 CCTAACCCGTACATGTAC
45521327 CCTAACCCGTACATGTA
1 CCTAACCCGTACATGTA
45521344 TCCTTTTCCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.34, G:0.09, T:0.29
Consensus pattern (18 bp):
CCTAACCCGTACATGTAC
Found at i:45521864 original size:23 final size:23
Alignment explanation
Indices: 45521838--45522429 Score: 533
Period size: 23 Copynumber: 23.9 Consensus size: 23
45521828 TAAAAACCCT
45521838 AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
*
45521861 AACCCTAACCCT-ACTTAATTAAAAA
1 AACCCTAA-CCTAATTTAATT--AAA
45521886 CCCTAACCCTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTAATTAAA
*
45521913 AACCCTAACCTAATTCAATTAAA
1 AACCCTAACCTAATTTAATTAAA
* *
45521936 AACCCTAACATAACTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
*
45521959 AAACCTAACCTAACTTAATTAAATTAAA
1 AACCCTAACCTAA--T--TT-AATTAAA
* *
45521987 AACCCTAACATAACTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
*
45522010 AACCCTAAGCTAATTTTACTTAATTAAAA
1 AACCCTAACCTAA---T--TTAATT-AAA
45522039 ACCCTAACCCTAACCTAATTTAATTAAA
1 A-----ACCCTAACCTAATTTAATTAAA
*
45522067 AACCCTAACCTAAATTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
* *
45522090 AACCCTAACATAACTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
45522113 AACCCTAACCTAACTTAATTAAATTAAA
1 AACCCTAACCTAA--T--TT-AATTAAA
* *
45522141 AACCCTAACATAACTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
45522164 AACCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAA--C----CTAATTTAATTAAA
45522193 AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
* *
45522216 AACCCTAACATAACTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
*
45522239 AAACCTAACCTAACTTAATTAAATTAAA
1 AACCCTAACCTAA--T--TT-AATTAAA
*
45522267 AACCCTAACATAATTTAATT-AA
1 AACCCTAACCTAATTTAATTAAA
*
45522289 AACCCTAACCCT-ACTTAATTAAAAA
1 AACCCTAA-CCTAATTTAATT--AAA
45522314 CCCTAACCCTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTAATTAAA
45522341 AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
* *
45522364 AACCCTAACATAACTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
* * *
45522387 AATCCTAACATAACTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
*
45522410 AACCCTAAGCTAATTTAATT
1 AACCCTAACCTAATTTAATT
45522430 TAATTAAAAA
Statistics
Matches: 478, Mismatches: 42, Indels: 98
0.77 0.07 0.16
Matches are distributed among these distances:
22 17 0.04
23 289 0.60
24 9 0.02
25 6 0.01
26 1 0.00
27 13 0.03
28 71 0.15
29 60 0.13
31 1 0.00
34 11 0.02
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (23 bp):
AACCCTAACCTAATTTAATTAAA
Found at i:45522069 original size:154 final size:155
Alignment explanation
Indices: 45521838--45522517 Score: 847
Period size: 154 Copynumber: 4.5 Consensus size: 155
45521828 TAAAAACCCT
*
45521838 AACCCTAACC-TAATTTAATTAAAAACCCTAACCCT-A-C----TTAATTAAAAACCCTAACCCT
1 AACCCTAACCATAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAA-CCTAACCCT
*
45521896 AACCTAATTTAATTAAAAACCCTAACCTAA-TTCAATTAAAAACCCTAACATAACTTAATTAAAA
65 AACCTAATTTAATTAAAAACCCTAACATAACTT-AATTAAAAACCCTAACATAACTTAATTAAAA
45521960 AACCTAACCTAACTTAATTAAATTAAA
129 AACCTAACCTAACTTAATTAAATTAAA
* ** * *
45521987 AACCCTAA-CATAACTTAATTAAAAACCCTAA-GCTAATTTTACTTAATTAAAAACCCTAACCCT
1 AACCCTAACCATAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAA-CCTAACCCT
* *
45522050 AACCTAATTTAATTAAAAACCCTAACCTAAATTAATTAAAAACCCTAACATAACTTAATTAAAAA
65 AACCTAATTTAATTAAAAACCCTAACATAACTTAATTAAAAACCCTAACATAACTTAATTAAAAA
*
45522115 CCCTAACCTAACTTAATTAAATTAAA
130 ACCTAACCTAACTTAATTAAATTAAA
*
45522141 AACCCTAA-CATAACTTAATTAAAAACCCTAACCCTAATCTAATTTAATT--AAA---AACCCTA
1 AACCCTAACCATAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCTAACCCTA
* *
45522200 ACCTAATTTAATTAAAAACCCTAACATAACTTAATTAAAAAACCTAACCTAACTTAATTAAATTA
66 ACCTAATTTAATTAAAAACCCTAACATAACTTAATTAAAAACCCTAACATAACTTAATTAAA--A
* *
45522265 AA---AACCCTAACATAATTTAATT-AA
129 AACCTAA-CCTAACTTAATTAAATTAAA
*
45522289 AACCCTAACCCT-ACTTAATTAAAAACCCTAACCCTAACCTAATTTAATT--AAA---AACCCTA
1 AACCCTAACCATAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCTAACCCTA
* *
45522348 ACCTAATTTAATTAAAAACCCTAACATAACTTAATTAAAAATCCTAACATAACTTAATTAAAAAC
66 ACCTAATTTAATTAAAAACCCTAACATAACTTAATTAAAAACCCTAACATAACTTAATTAAAAAA
* * *
45522413 CCTAAGCTAATTTAATTTAATTAAA
131 CCTAACCTAACTTAATTAAATTAAA
* *
45522438 AACCCTAACCCTAACCTAATTTAATTGAAATCCCTAA-CCTAACCTAATTTAATTAAAAACCTCA
1 AACCCTAACCATAACTTAA-TTAA---AAA-CCCTAACCCTAACCTAATTTAATTAAAAACCT-A
*
45522502 ACCCTAACCTATTTTA
60 ACCCTAACCTAATTTA
45522518 CATGAAAACC
Statistics
Matches: 477, Mismatches: 25, Indels: 47
0.87 0.05 0.09
Matches are distributed among these distances:
146 2 0.00
148 135 0.28
149 127 0.27
150 5 0.01
151 6 0.01
153 3 0.01
154 159 0.33
155 21 0.04
156 3 0.01
160 16 0.03
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (155 bp):
AACCCTAACCATAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCTAACCCTA
ACCTAATTTAATTAAAAACCCTAACATAACTTAATTAAAAACCCTAACATAACTTAATTAAAAAA
CCTAACCTAACTTAATTAAATTAAA
Found at i:45522486 original size:126 final size:129
Alignment explanation
Indices: 45521838--45522486 Score: 632
Period size: 126 Copynumber: 5.2 Consensus size: 129
45521828 TAAAAACCCT
* * * * *
45521838 AACCCTAACCTAATTTAATTAAAAACCCTAACCCT-AC-TT-AATTAAAAACCCTAACCCTAACC
1 AACCCTAACATAACTTAATTAAAAACCCTAA-CATAACATTAAATTAAAAACCCTAA-CATAACT
* * *
45521900 TAATTTAATTAAA----AACCCTAACCTAATTCAATTAAAAACCCTAA-CATAACTTAA-TTAA-
64 TAA-TTAA--AAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAAT
45521958 -AAA
126 TAAA
* *
45521961 ACCTAACCTAACTTAA-TTAAATTAAAAACCCTAACATAAC-TT-AATTAAAAACCCTAAGCTAA
1 A---ACCCTAACATAACTT-AATTAAAAACCCTAACATAACATTAAATTAAAAACCCTAA-C--A
*
45522023 TTTTACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAA-CCT-A---AA-T
59 --TAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATT
45522082 TAATTAAA
122 TAATTAAA
*
45522090 AACCCTAACATAACTTAATTAAAAACCCTAACCTAACTTAATTAAATTAAAAACCCTAACATAAC
1 AACCCTAACATAACTTAATTAAAAACCCTAACATAAC---ATTAAATTAAAAACCCTAACATAAC
*
45522155 TTAATTAAAAACCCTAACCCTAATCTAATTTAATT--AAA----AACCCTAACCTAATTTAATTA
63 TTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
45522214 AA
128 AA
* * *
45522216 AACCCTAACATAACTTAATTAAAAAACCTAACCTAACTTAATTAAATTAAAAACCCTAACATAAT
1 AACCCTAACATAACTTAATTAAAAACCCTAACATAAC---ATTAAATTAAAAACCCTAACATAAC
45522281 TTAATT-AAAACCCTAACCCT-A-C----TTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
63 TTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
45522339 AA
128 AA
* * *
45522341 AACCCTAACCTAATTTAATTAAAAACCCTAACATAAC-TT-AATTAAAAATCCTAACATAACTTA
1 AACCCTAACATAACTTAATTAAAAACCCTAACATAACATTAAATTAAAAACCCTAACATAACTTA
* ** *
45522404 ATTAAAAACCCTAA-GCTAATTTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTGAA
66 ATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAA
* * *
45522467 ATCCCTAACCTAACCTAATT
1 AACCCTAACATAACTTAATT
45522487 TAATTAAAAA
Statistics
Matches: 458, Mismatches: 28, Indels: 77
0.81 0.05 0.14
Matches are distributed among these distances:
119 6 0.01
120 29 0.06
121 19 0.04
122 1 0.00
123 2 0.00
124 4 0.01
125 76 0.17
126 244 0.53
127 11 0.02
128 1 0.00
129 8 0.02
130 10 0.02
131 47 0.10
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (129 bp):
AACCCTAACATAACTTAATTAAAAACCCTAACATAACATTAAATTAAAAACCCTAACATAACTTA
ATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAA
Found at i:45522563 original size:58 final size:58
Alignment explanation
Indices: 45522428--45522639 Score: 236
Period size: 58 Copynumber: 3.6 Consensus size: 58
45522418 GCTAATTTAA
* * * *
45522428 TTTAATTAAAAACCCTAACCCTAACCTAATTTAATTGAAATCCCTAA-CCTAACCTAA
1 TTTAATTAAAATCCCTAACCCTAACCTAATTTAATTGAAAACCTTAACCCTAACCTAT
* *
45522485 TTTAATTAAAA-ACCTCAACCCTAACCTATTTTACA-TGAAAACCTTAACCCTAACCTAT
1 TTTAATTAAAATCCCT-AACCCTAACCTAATTTA-ATTGAAAACCTTAACCCTAACCTAT
* *
45522543 TTTAATTAAAATCCCTAACCCTAACCTAATTTAATTAAAAACTCTT-ACCCTGATTTATC-AT
1 TTTAATTAAAATCCCTAACCCTAACCTAATTTAATTGAAAAC-CTTAACCCT-A---ACCTAT
* *
45522604 TTTATTTGAAATCCCTAACCCTAACCTAATTTAATT
1 TTTAATTAAAATCCCTAACCCTAACCTAATTTAATT
45522640 AATGTAAAAA
Statistics
Matches: 134, Mismatches: 11, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
56 3 0.02
57 38 0.28
58 48 0.36
59 7 0.05
61 36 0.27
62 2 0.01
ACGTcount: A:0.39, C:0.25, G:0.02, T:0.34
Consensus pattern (58 bp):
TTTAATTAAAATCCCTAACCCTAACCTAATTTAATTGAAAACCTTAACCCTAACCTAT
Found at i:45526096 original size:124 final size:125
Alignment explanation
Indices: 45525860--45526125 Score: 383
Period size: 124 Copynumber: 2.1 Consensus size: 125
45525850 CCACGAGGGC
45525860 GCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
1 GCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
* * * * **
45525925 GAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCCTGGTATCA
66 GAAATCACGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
* * * *
45525985 GCGATTTTATACTATTTGCTCAGAAAACGTC-AACAAAAATTATTTCTTACATGACC-ACTGTAG
1 GCGATTTGACACTATTTGCTCAG-AAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAG
* *
45526048 CGAAATCACGTCCACGAGGCCACTATTTCACAATTTCTTCTGAAATAGCATCCTGGTAGAA
65 CGAAATCACGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
**
45526109 GCGATTTCCCACTATTT
1 GCGATTTGACACTATTT
45526126 AACCAGATAC
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
124 74 0.59
125 44 0.35
126 7 0.06
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (125 bp):
GCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
GAAATCACGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
Found at i:45526490 original size:33 final size:32
Alignment explanation
Indices: 45526408--45526490 Score: 78
Period size: 33 Copynumber: 2.5 Consensus size: 32
45526398 TAGCCTAAAG
*
45526408 AGCTGAAGTTGAAAAAAAAAACTGATAAAAAAA
1 AGCTG-AGTTAAAAAAAAAAACTGATAAAAAAA
* * **
45526441 AGCT-AATGAAAGAAAAAAAAACTGATGGAAAAA
1 AGCTGAGT-TAA-AAAAAAAAACTGATAAAAAAA
45526474 AGCTGGAGTTAAAAAAA
1 AGCT-GAGTTAAAAAAA
45526491 GAAGCTTGTC
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
31 2 0.05
32 1 0.03
33 32 0.82
34 2 0.05
35 2 0.05
ACGTcount: A:0.61, C:0.06, G:0.18, T:0.14
Consensus pattern (32 bp):
AGCTGAGTTAAAAAAAAAAACTGATAAAAAAA
Found at i:45527187 original size:18 final size:18
Alignment explanation
Indices: 45527166--45527202 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
45527156 ATTATTTAAA
*
45527166 TATCATTCATTATTATAT
1 TATCATTCATTAGTATAT
*
45527184 TATCATTTATTAGTATAT
1 TATCATTCATTAGTATAT
45527202 T
1 T
45527203 TAAGTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.57
Consensus pattern (18 bp):
TATCATTCATTAGTATAT
Found at i:45532978 original size:3 final size:3
Alignment explanation
Indices: 45532799--45532959 Score: 93
Period size: 3 Copynumber: 55.0 Consensus size: 3
45532789 ATACCTTTGC
* **
45532799 TAT T-T TAT CAT TAT T-T T-T TAT TAT TGG TAT TAT TAT T-T ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* ** * * * * *
45532841 TAT TAT TAT TAT TAT TAA CGT CAT CAT TAC TA- TAG TAT TAT TAT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
45532888 TAT TACT T-T TAT TAC TAT TAT TTT TGT TAT TAT TAA TAT TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
45532933 TAG TAT TACT T-T TAT TAT TAA TAT TAT
1 TAT TAT TA-T TAT TAT TAT TAT TAT TAT
45532960 CACAACTATC
Statistics
Matches: 122, Mismatches: 27, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
2 13 0.11
3 104 0.85
4 5 0.04
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:45533219 original size:9 final size:9
Alignment explanation
Indices: 45533201--45533245 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
45533191 ACATTTTATA
45533201 ATTTTATTT
1 ATTTTATTT
*
45533210 ATTTTCTTT
1 ATTTTATTT
45533219 ATTGTTA-TT
1 ATT-TTATTT
45533228 A-TTTATTT
1 ATTTTATTT
45533236 A-TTTATTT
1 ATTTTATTT
45533244 AT
1 AT
45533246 GTGCCTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
7 3 0.10
8 12 0.39
9 14 0.45
10 2 0.06
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (9 bp):
ATTTTATTT
Found at i:45536793 original size:6 final size:6
Alignment explanation
Indices: 45536784--45536902 Score: 59
Period size: 6 Copynumber: 19.8 Consensus size: 6
45536774 AAGAAAAAGA
* * * * *
45536784 AAAATC AAAATC AAAGTC AAAATG AAAATG AAAATG AAAATGAA AAAATC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAAT--C AAAATC
* **
45536834 AAAAATC AAAAT- AAAA-A AAAAGA AGAAAT- AAGAA-- AAAATC AAAATC
1 -AAAATC AAAATC AAAATC AAAATC A-AAATC AA-AATC AAAATC AAAATC
* * *
45536880 AAGATC AAAATG AAAATG AAAAT
1 AAAATC AAAATC AAAATC AAAAT
45536903 GAGAAAAAGA
Statistics
Matches: 95, Mismatches: 9, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
4 2 0.02
5 11 0.12
6 68 0.72
7 9 0.09
8 5 0.05
ACGTcount: A:0.70, C:0.07, G:0.09, T:0.14
Consensus pattern (6 bp):
AAAATC
Found at i:45536845 original size:33 final size:32
Alignment explanation
Indices: 45536800--45536901 Score: 87
Period size: 33 Copynumber: 2.9 Consensus size: 32
45536790 AAAATCAAAG
* *
45536800 TCAAAATGAAAATGAAAATGAAAATGAAAAAA
1 TCAAAATCAAAATAAAAATGAAAATGAAAAAA
*
45536832 TCAAAAATCAAAATAAAAAAAAAGAAGAAATAAGAAAAAA
1 TC-AAAATCAAAAT---AAAAATG-A-AAAT--GAAAAAA
* *
45536872 TCAAAATCAAGATCAAAATGAAAATGAAAA
1 TCAAAATCAAAATAAAAATGAAAATGAAAA
45536902 TGAGAAAAAG
Statistics
Matches: 56, Mismatches: 6, Indels: 16
0.72 0.08 0.21
Matches are distributed among these distances:
32 7 0.12
33 10 0.18
34 4 0.07
35 1 0.02
36 10 0.18
37 1 0.02
38 4 0.07
39 10 0.18
40 9 0.16
ACGTcount: A:0.71, C:0.06, G:0.10, T:0.14
Consensus pattern (32 bp):
TCAAAATCAAAATAAAAATGAAAATGAAAAAA
Found at i:45536883 original size:17 final size:16
Alignment explanation
Indices: 45536834--45536883 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
45536824 TGAAAAAATC
*
45536834 AAAAATCAAAATAAAA
1 AAAAATCAAAATAAGA
**
45536850 AAAAAGAAGAAATAAGA
1 AAAAATCA-AAATAAGA
45536867 AAAAATCAAAATCAAGA
1 AAAAATCAAAAT-AAGA
45536884 TCAAAATGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
16 10 0.37
17 17 0.63
ACGTcount: A:0.76, C:0.06, G:0.08, T:0.10
Consensus pattern (16 bp):
AAAAATCAAAATAAGA
Found at i:45537856 original size:7 final size:7
Alignment explanation
Indices: 45537839--45537898 Score: 65
Period size: 6 Copynumber: 9.0 Consensus size: 7
45537829 TGAGTCAAAA
45537839 AAAAATG
1 AAAAATG
45537846 -AAAATG
1 AAAAATG
45537852 AAAAAATG
1 -AAAAATG
*
45537860 -AAATTG
1 AAAAATG
*
45537866 -AAATTG
1 AAAAATG
45537872 -AAAATG
1 AAAAATG
45537878 AAAAATG
1 AAAAATG
45537885 AAAAATG
1 AAAAATG
45537892 AAAAATG
1 AAAAATG
45537899 GAGAGGCTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
6 22 0.46
7 20 0.42
8 6 0.12
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (7 bp):
AAAAATG
Found at i:45537893 original size:26 final size:26
Alignment explanation
Indices: 45537844--45537894 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
45537834 CAAAAAAAAA
*
45537844 TGAAAATGAAAAAATGAAATTGAAAT
1 TGAAAATGAAAAAATGAAAATGAAAT
45537870 TGAAAATG-AAAAATGAAAAATGAAA
1 TGAAAATGAAAAAATG-AAAATGAAA
45537895 AATGGAGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.65, C:0.00, G:0.16, T:0.20
Consensus pattern (26 bp):
TGAAAATGAAAAAATGAAAATGAAAT
Found at i:45537897 original size:14 final size:13
Alignment explanation
Indices: 45537839--45537898 Score: 77
Period size: 14 Copynumber: 4.5 Consensus size: 13
45537829 TGAGTCAAAA
45537839 AAAAATGAAAATG
1 AAAAATGAAAATG
*
45537852 AAAAAATGAAATTG
1 -AAAAATGAAAATG
*
45537866 -AAATTGAAAATG
1 AAAAATGAAAATG
45537878 AAAAATGAAAAATG
1 AAAAATG-AAAATG
45537892 AAAAATG
1 AAAAATG
45537899 GAGAGGCTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
12 10 0.25
13 5 0.12
14 25 0.62
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (13 bp):
AAAAATGAAAATG
Found at i:45537960 original size:79 final size:79
Alignment explanation
Indices: 45537870--45538085 Score: 423
Period size: 79 Copynumber: 2.7 Consensus size: 79
45537860 AAATTGAAAT
*
45537870 TGAAAATGAAAAATGAAAAATGAAAAATGGAGAGGCTAAGGGGAAAACCCGCAAAGGGTACTTTG
1 TGAAAATGAAAAATGGAAAATGAAAAATGGAGAGGCTAAGGGGAAAACCCGCAAAGGGTACTTTG
45537935 AGTCGGGAAAAAAA
66 AGTCGGGAAAAAAA
45537949 TGAAAATGAAAAATGGAAAATGAAAAATGGAGAGGCTAAGGGGAAAACCCGCAAAGGGTACTTTG
1 TGAAAATGAAAAATGGAAAATGAAAAATGGAGAGGCTAAGGGGAAAACCCGCAAAGGGTACTTTG
45538014 AGTCGGGAAAAAAA
66 AGTCGGGAAAAAAA
45538028 TGAAAATGAAAAATGGAAAATGAAAAATGGAGAGGCTAAGGGGAAAACCCGCAAAGGG
1 TGAAAATGAAAAATGGAAAATGAAAAATGGAGAGGCTAAGGGGAAAACCCGCAAAGGG
45538086 CACCTTAGGC
Statistics
Matches: 136, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 136 1.00
ACGTcount: A:0.49, C:0.09, G:0.29, T:0.13
Consensus pattern (79 bp):
TGAAAATGAAAAATGGAAAATGAAAAATGGAGAGGCTAAGGGGAAAACCCGCAAAGGGTACTTTG
AGTCGGGAAAAAAA
Found at i:45537967 original size:8 final size:7
Alignment explanation
Indices: 45537944--45537977 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
45537934 GAGTCGGGAA
45537944 AAAAATG
1 AAAAATG
45537951 -AAAATG
1 AAAAATG
45537957 AAAAATG
1 AAAAATG
*
45537964 GAAAATG
1 AAAAATG
45537971 AAAAATG
1 AAAAATG
45537978 GAGAGGCTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 6 0.25
7 18 0.75
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.15
Consensus pattern (7 bp):
AAAAATG
Found at i:45537967 original size:14 final size:14
Alignment explanation
Indices: 45537944--45537979 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
45537934 GAGTCGGGAA
45537944 AAAAAT-GAAAATG
1 AAAAATGGAAAATG
45537957 AAAAATGGAAAATG
1 AAAAATGGAAAATG
45537971 AAAAATGGA
1 AAAAATGGA
45537980 GAGGCTAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.67, C:0.00, G:0.19, T:0.14
Consensus pattern (14 bp):
AAAAATGGAAAATG
Found at i:45538046 original size:8 final size:7
Alignment explanation
Indices: 45538023--45538056 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
45538013 GAGTCGGGAA
45538023 AAAAATG
1 AAAAATG
45538030 -AAAATG
1 AAAAATG
45538036 AAAAATG
1 AAAAATG
*
45538043 GAAAATG
1 AAAAATG
45538050 AAAAATG
1 AAAAATG
45538057 GAGAGGCTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 6 0.25
7 18 0.75
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.15
Consensus pattern (7 bp):
AAAAATG
Found at i:45538046 original size:14 final size:14
Alignment explanation
Indices: 45538023--45538058 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
45538013 GAGTCGGGAA
45538023 AAAAAT-GAAAATG
1 AAAAATGGAAAATG
45538036 AAAAATGGAAAATG
1 AAAAATGGAAAATG
45538050 AAAAATGGA
1 AAAAATGGA
45538059 GAGGCTAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.67, C:0.00, G:0.19, T:0.14
Consensus pattern (14 bp):
AAAAATGGAAAATG
Found at i:45539339 original size:46 final size:45
Alignment explanation
Indices: 45539272--45539834 Score: 321
Period size: 44 Copynumber: 12.8 Consensus size: 45
45539262 ATTATACAGG
*
45539272 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAA-TTCAGA
* * * *
45539318 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA--GAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAG-AATTCAGA
* * *
45539362 TCTTATCTCCCTG-GGATTACAGCGGAGTAGATTGAAGATAGT-A-A
1 TCTTATCTCCCTGAGG-TTACAGTGGAGTAGATCGAAGA-ATTCAGA
* * * ** ** *
45539406 TCCTATCTCTCTGAGATTACAGTGGAGCGGATTAAAAGAA---GGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGA-TCGAAGAATTCAGA
* * * * ** * *
45539449 TCTTATCTCTCTAAAGTTGCAGCAGAGTAGATC---GTA-TCAGG
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTCAGA
* * ****
45539490 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAG-CCGGAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTCAGA
* * * *
45539534 TCTTATTTCCCTGAGATTACAGCGGAGTAGATCGAAG-A--CACTA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTCA-GA
* * * * ** * **
45539577 TCCTATCTCTCTGAAGTTATAGTGGAGCGGAT-TAA-AATAAAAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAAT-TCAGA
* * ** *
45539621 TCTTATCTCTCTGAAGTTACAGCAGAGTAGATC---GCA-TCAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTCAGA
* *
45539662 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAA-TTCAGA
* * *
45539708 TCTTATCTCTCTAAGGTTACAGTGGAGTAGACCGAAGAATTTCAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAA-TTCAGA
* * *
45539754 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAG---CCAGGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTCA-GA
* * * *
45539797 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCCAAGA
1 TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGA
45539835 CACTATCCTA
Statistics
Matches: 399, Mismatches: 90, Indels: 58
0.73 0.16 0.11
Matches are distributed among these distances:
39 2 0.01
41 57 0.14
42 7 0.02
43 85 0.21
44 125 0.31
45 8 0.02
46 114 0.29
47 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (45 bp):
TCTTATCTCCCTGAGGTTACAGTGGAGTAGATCGAAGAATTCAGA
Found at i:45539563 original size:172 final size:172
Alignment explanation
Indices: 45539313--45539688 Score: 603
Period size: 172 Copynumber: 2.2 Consensus size: 172
45539303 CCGAAGAATT
*
45539313 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGGGA
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGA
* * *
45539378 TTACAGCGGAGTAGATTGAAGATAGTAATCCTATCTCTCTG-AGATTACAGTGGAGCGGATTAAA
66 TTACAGCGGAGTAGATCGAAGACACT-ATCCTATCTCTCTGAAG-TTACAGTGGAGCGGATTAAA
* * * *
45539442 A-GAAGGATCTTATCTCTCTAAAGTTGCAGCAGAGTAGATCGTA
129 ATAAAAGATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCGCA
* * *
45539485 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCGGAGATCTTATTTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGA
*
45539550 TTACAGCGGAGTAGATCGAAGACACTATCCTATCTCTCTGAAGTTATAGTGGAGCGGATTAAAAT
66 TTACAGCGGAGTAGATCGAAGACACTATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAAT
*
45539615 AAAAGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
131 AAAAGATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCGCA
45539657 TCAGATCTTATCTCCCTGAGGTTACAGTGGAG
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAG
45539689 TAGACCAAAG
Statistics
Matches: 188, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
171 34 0.18
172 154 0.82
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (172 bp):
TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGA
TTACAGCGGAGTAGATCGAAGACACTATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAAT
AAAAGATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCGCA
Found at i:45539622 original size:87 final size:87
Alignment explanation
Indices: 45539272--45539891 Score: 409
Period size: 87 Copynumber: 7.1 Consensus size: 87
45539262 ATTATACAGG
* * * * *
45539272 TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGA-ATTTCAGATCTTATCTCCCTGAGGTT
1 TCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACA---C-GATCCTATCTCCCTGAAGTT
* *** *
45539336 ACAGTGGAGCAGATTGAAGCCAGAGA
62 ACAGTGGAGCAGATTAAAATAAAAGA
* * * *
45539362 TCTTATCTCCCTGGGATTACAGCGGAGTAGATTGAAGATA-GTAATCCTATCTCTCTG-AGATTA
1 TCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACG--ATCCTATCTCCCTGAAG-TTA
* * *
45539425 CAGTGGAGCGGATTAAAA-GAAGGA
63 CAGTGGAGCAGATTAAAATAAAAGA
* * * * * * * * *
45539449 TCTTATCTCTCT-AAAGTTGCAGCAGAGTAGATCGTA-TCA-GGTCTTATCTCCCTGAGGTTACA
1 TCTTATCTCCCTGAGA-TTACAGCGGAGTAGATCGAAGACACGATCCTATCTCCCTGAAGTTACA
* *****
45539511 GTGGAGCAGATTGAAGCCGGAGA
65 GTGGAGCAGATTAAAATAAAAGA
* * * *
45539534 TCTTATTTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCTCTGAAGTTATAG
1 TCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACGATCCTATCTCCCTGAAGTTACAG
*
45539599 TGGAGCGGATTAAAATAAAAGA
66 TGGAGCAGATTAAAATAAAAGA
* * * * * *
45539621 TCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGCA-TCA-GATCTTATCTCCCTGAGGTTACA
1 TCTTATCTCCCTGAGA-TTACAGCGGAGTAGATCGAAGACACGATCCTATCTCCCTGAAGTTACA
* ** ***
45539683 GTGGAGTAGACCAAAGAATTTCAGA
65 GTGGAGCAGA-TTAA-AATAAAAGA
* * * * * * *
45539708 TCTTATCTCTCTAAGGTTACAGTGGAGTAGACCGAAGA-ATTTCAGATCTTATCTCCCTGAGGTT
1 TCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACA---C-GATCCTATCTCCCTGAAGTT
* *** *
45539772 ACAGTGGAGCAGATT-GAAGCCAGGA
62 ACAGTGGAGCAGATTAAAATAAAAGA
* * * *
45539797 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCCAAGACACTATCCTATCTTCCTGAAGTTACAG
1 TCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACGATCCTATCTCCCTGAAGTTACAG
* * *
45539862 GGGAGCGGATTAAAATAAAGGA
66 TGGAGCAGATTAAAATAAAAGA
45539884 TCTTATCT
1 TCTTATCT
45539892 GCGGAATAAA
Statistics
Matches: 404, Mismatches: 104, Indels: 47
0.73 0.19 0.08
Matches are distributed among these distances:
84 29 0.07
85 56 0.14
86 42 0.10
87 145 0.36
88 30 0.07
89 35 0.09
90 34 0.08
91 1 0.00
92 32 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (87 bp):
TCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACGATCCTATCTCCCTGAAGTTACAG
TGGAGCAGATTAAAATAAAAGA
Found at i:45539902 original size:26 final size:26
Alignment explanation
Indices: 45539866--45539917 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
45539856 TTACAGGGGA
*
45539866 GCGGATTAAAATAAAGGATCTTATCT
1 GCGGAATAAAATAAAGGATCTTATCT
45539892 GCGGAATAAAATAAAGGATCTTATCT
1 GCGGAATAAAATAAAGGATCTTATCT
45539918 CTCTAAAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (26 bp):
GCGGAATAAAATAAAGGATCTTATCT
Found at i:45540154 original size:44 final size:46
Alignment explanation
Indices: 45540052--45540598 Score: 168
Period size: 44 Copynumber: 12.5 Consensus size: 46
45540042 CATCAGGTCT
* * * * ** *
45540052 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAAAATACCAGATCG
*
45540098 TATCTCCTTGAAGTTGCAGTGGAGCAGA-CGAAAAATACCA-ATCG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAAAATACCAGATCG
* ** * ** ** *
45540142 TGTCTCCCTGAAGTTGCAGTGGAGTGGA-TGAAAACGATGA-ATCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAAAATACCAGATCG
* * **** * * * *
45540186 TATACT-TCTGAAGTTGCAGT--AG--G-TCGAATTGGATCAAACCT
1 TAT-CTCCCTGAAGTTGCAGTGGAGCAGACCGAAAAATACCAGATCG
*** * * *
45540227 TATCTCCCTGAAGTTGCAGTGGAGCAGGTTG-AAGATA-CAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAAAATACCAGATCG
** ** ** *
45540271 TATCTCCCTGAAGTTGCAGTGGAGTGGA-TTAAAACCA-CAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAAAATACCAGATCG
* * ** * * *
45540315 TATCTCTCTGAAGTTGCAGTAGAGCAGATTG---CAT--CAGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAAAATACCAGATCG
* ** * * *
45540356 TATCTCCCTGAGGTTATAGTGGAGCAGA-TGAAAGAA-ATCA-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAA-AATACCAGATCG
* ** **
45540400 TATCTCCCTGAAGTTGCAATGGAGCAGA-TTAAAACCA-CAGATC-
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAAAATACCAGATCG
* * * * * * * *
45540443 TCATCTCTCTGAAGTTACAGTAGAGTAGATCG---CAT--CAGGTCT
1 T-ATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAAAATACCAGATCG
* * * * ** *
45540485 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAAAATACCAGATCG
*
45540531 TATCTCCTTGAAGTTGCAGTGGAGCAGA-CGAAAAATACCA-ATCG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAAAATACCAGATCG
*
45540575 TGTCTCCCTGAAGTTGCAGTGGAG
1 TATCTCCCTGAAGTTGCAGTGGAG
45540599 TGGATGAAAA
Statistics
Matches: 382, Mismatches: 92, Indels: 56
0.72 0.17 0.11
Matches are distributed among these distances:
40 12 0.03
41 78 0.20
42 3 0.01
43 7 0.02
44 200 0.52
45 26 0.07
46 56 0.15
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (46 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAAAATACCAGATCG
Found at i:45540240 original size:129 final size:129
Alignment explanation
Indices: 45540096--45540554 Score: 437
Period size: 129 Copynumber: 3.5 Consensus size: 129
45540086 AATTTCAGAT
* * * *
45540096 CTTATCTCCTTGAAGTTGCAGTGGAGCAGACGAAAAATACCAATCGTGTCTCCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAAAATACCAATCCTATCTCCCTGAAGTTGCAG
* * *
45540161 TGGAGTGGATGAAAACGA-TGAATCATATACT-TCTGAAGTTGCAGTAG-GTC-GAATTGGATCA
66 TGGAGTGGATGAAAACCACAG-ATCATAT-CTCTCTGAAGTTGCAGTAGAG-CAG-ATTGCATCA
45540222 AAC
127 AAC
* * * *
45540225 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTG-AAGATACAAATCTTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCA-GATGAAAAATACCAATCCTATCTCCCTGAAGTTGCA
* * ***
45540289 GTGGAGTGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGCATCAGGT
65 GTGGAGTGGATGAAAACCACAGATCATATCTCTCTGAAGTTGCAGTAGAGCAGATTGCATCAAAC
* ** *
45540354 CTTATCTCCCTGAGGTTATAGTGGAGCAGATGAAAGAA-ATCAATCCTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAA-AATACCAATCCTATCTCCCTGAAGTTGCA
* ** * * * * **
45540418 ATGGAGCAGATTAAAACCACAGATC-TCATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
65 GTGGAGTGGATGAAAACCACAGATCAT-ATCTCTCTGAAGTTGCAGTAGAGCAGATTGCATCAAA
*
45540482 T
129 C
* * * * * ** * *
45540483 CTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCTTGAAGTTGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TGAAAAATACCA-ATCCTATCTCCCTGAAGTTGC
45540548 AGTGGAG
64 AGTGGAG
45540555 CAGACGAAAA
Statistics
Matches: 282, Mismatches: 37, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
128 6 0.02
129 239 0.85
130 12 0.04
131 25 0.09
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (129 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAAAATACCAATCCTATCTCCCTGAAGTTGCAG
TGGAGTGGATGAAAACCACAGATCATATCTCTCTGAAGTTGCAGTAGAGCAGATTGCATCAAAC
Found at i:45540730 original size:44 final size:44
Alignment explanation
Indices: 45540681--45540818 Score: 108
Period size: 44 Copynumber: 3.2 Consensus size: 44
45540671 AAAACCAAAC
45540681 CTTGCCTCCATCGGTTACAGTGGAGCTAGTTAAAGATAACAGAT
1 CTTGCCTCCATCGGTTACAGTGGAGCTAGTTAAAGATAACAGAT
* * * * *
45540725 CTTGCCTTCC-TAC-GTTAACAGCGAAGC-AGATCGAAA-ACAA-AG-C
1 CTTGCC-TCCAT-CGGTT-ACAGTGGAGCTAG-T-TAAAGATAACAGAT
** * *
45540768 CTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGAT
1 CTTGCCTCCATCGGTTACAGTGGAGCTAGTTAAAGATAACAGAT
45540812 CTTGCCT
1 CTTGCCT
45540819 TCCTGCGTTA
Statistics
Matches: 69, Mismatches: 14, Indels: 22
0.66 0.13 0.21
Matches are distributed among these distances:
41 3 0.04
42 13 0.19
43 13 0.19
44 21 0.30
45 16 0.23
46 3 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (44 bp):
CTTGCCTCCATCGGTTACAGTGGAGCTAGTTAAAGATAACAGAT
Found at i:45540800 original size:87 final size:87
Alignment explanation
Indices: 45540655--45541064 Score: 698
Period size: 87 Copynumber: 4.7 Consensus size: 87
45540645 AATTGGATCA
* * ** *
45540655 AACAGTGAAGCAGA-CCAAAACCAAA-CCTTGCCTCCATCGGTTACAGTGGAGCTAGTTAAAGAT
1 AACAGCGAAGCAGATCGAAAA-CAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGAT
* *
45540718 AACAGATCTTGCCTTCCTACGTT
65 AGCAGATCTTGCCTTCCTGCGTT
45540741 AACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATA
1 AACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATA
45540806 GCAGATCTTGCCTTCCTGCGTT
66 GCAGATCTTGCCTTCCTGCGTT
*
45540828 AACAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATA
1 AACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATA
45540893 GCAGATCTTGCCTTCCTGCGTT
66 GCAGATCTTGCCTTCCTGCGTT
*
45540915 AACAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATA
1 AACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATA
45540980 GCAGATCTTGCCTTCCTGCGTT
66 GCAGATCTTGCCTTCCTGCGTT
* *
45541002 AACAGCGAAGCAAATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGA
1 AACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGA
45541065 CATCAAGTCT
Statistics
Matches: 311, Mismatches: 11, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
86 17 0.05
87 294 0.95
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (87 bp):
AACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATA
GCAGATCTTGCCTTCCTGCGTT
Found at i:45540861 original size:43 final size:43
Alignment explanation
Indices: 45540812--45540948 Score: 102
Period size: 43 Copynumber: 3.2 Consensus size: 43
45540802 GATAGCAGAT
45540812 CTTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAGC
** ** * * * * * * *
45540855 CTTGCC-TCCAT-CGGTT-GTAGTGGAGCTGGT-TAAAGATAGCAGAT
1 CTTGCCTTCC-TGC-GTTAACAACGAAGCAGATCGAAA-ACA-AAG-C
45540899 CTTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAGC
45540942 CTTGCCT
1 CTTGCCT
45540949 CCATCGGTTG
Statistics
Matches: 63, Mismatches: 22, Indels: 18
0.61 0.21 0.17
Matches are distributed among these distances:
41 3 0.05
42 13 0.21
43 19 0.30
44 12 0.19
45 13 0.21
46 3 0.05
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (43 bp):
CTTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAGC
Found at i:45541265 original size:167 final size:166
Alignment explanation
Indices: 45541073--45541396 Score: 533
Period size: 167 Copynumber: 1.9 Consensus size: 166
45541063 GACATCAAGT
45541073 CTTATCTTCCTAAGCAGTAGCGGAGCAGATCGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAA
1 CTTATCTTCCTAAGCAGTAGCGGAGCAGATCGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAA
* * *
45541138 ACAGATTTAAGCCACGAATCCTATCTCCCTGAGTAGCAGTAAAGTAGGTTGAAA-TTGTAGATCT
66 ACAGATTTAAGCAACGAATCCTATCTCCCTGAGCAGCAGTAAAGTAGGTT-AAACAT-TAGATCT
*
45541202 TATCTCCCTACGCAGTAGTGGAGCAGATCGTATCAAAA
129 TATCTCCCTAAGCAGTAGTGGAGCAGATCGTATCAAAA
*
45541240 CTTATCTTCCTAAGCAGTAGCGGAGCAGATTGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAA
1 CTTATCTTCCTAAGCAGTAGCGGAGCAGATCGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAA
* * **
45541305 GCAGATTTAAGCAACGAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTAAAGCATTAGATCTT
66 ACAGATTTAAGCAACGAATCCTATCTCCCTGAGCAGCAGTAAAGTAGGTTAAA-CATTAGATCTT
45541370 ATCTCCCTAAGCAGTAGTGGAGCAGAT
130 ATCTCCCTAAGCAGTAGTGGAGCAGAT
45541397 AGAAGAAACC
Statistics
Matches: 146, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
166 3 0.02
167 142 0.97
168 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (166 bp):
CTTATCTTCCTAAGCAGTAGCGGAGCAGATCGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAA
ACAGATTTAAGCAACGAATCCTATCTCCCTGAGCAGCAGTAAAGTAGGTTAAACATTAGATCTTA
TCTCCCTAAGCAGTAGTGGAGCAGATCGTATCAAAA
Found at i:45541330 original size:84 final size:84
Alignment explanation
Indices: 45541075--45541348 Score: 236
Period size: 84 Copynumber: 3.3 Consensus size: 84
45541065 CATCAAGTCT
* * *
45541075 TATCTTCCTAAGCAGTAGCGGAGCAGATCGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAAAC
1 TATCTCCCTAAGCAGTAGCGGAGCAGATTGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAAGC
*
45541140 AGATTTAAGCCACGAATCC
66 AGATTTAAGCAACGAATCC
* * * *** * * ** * * * *
45541159 TATCTCCCTGAGTAGCAGTAAAGTAGGTTGAA-ATTGTAGATCTTATCTCCCTACGCAGT-AGTG
1 TATCTCCCTAAGCAGTAGCGGAGCAGATTGAAGACAGTAAATCTTATCT-TC-AAG-TGTAAG-G
* * * *
45541222 GAGCAGATCGT-ATCAA--AA-CT
62 AAGCAGAT-TTAAGCAACGAATCC
*
45541242 TATCTTCCTAAGCAGTAGCGGAGCAGATTGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAAGC
1 TATCTCCCTAAGCAGTAGCGGAGCAGATTGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAAGC
45541307 AGATTTAAGCAACGAATCC
66 AGATTTAAGCAACGAATCC
* *
45541326 TATCTCCCTGAGCAGTAGTGGAG
1 TATCTCCCTAAGCAGTAGCGGAG
45541349 TAGGTTAAAG
Statistics
Matches: 135, Mismatches: 44, Indels: 22
0.67 0.22 0.11
Matches are distributed among these distances:
80 1 0.01
81 14 0.10
82 4 0.03
83 40 0.30
84 59 0.44
85 4 0.03
86 12 0.09
87 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (84 bp):
TATCTCCCTAAGCAGTAGCGGAGCAGATTGAAGACAGTAAATCTTATCTTCAAGTGTAAGGAAGC
AGATTTAAGCAACGAATCC
Found at i:45541374 original size:43 final size:42
Alignment explanation
Indices: 45541326--45541481 Score: 145
Period size: 43 Copynumber: 3.6 Consensus size: 42
45541316 CAACGAATCC
*
45541326 TATCTCCCTGAGCAGTAGTGGAGTAGGTTAAAGCATTAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAG-ATTAGATCT
* * * * *
45541369 TATCTCCCTAAGCAGTAGTGGAGCA-GATAGAAGA-AACCAATCC
1 TATCTCCCTAAGCAGTAGTGGAGTAGGTTA-AAGATTA--GATCT
* * * *
45541412 TATCTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGA-T-TAGATCT
*
45541456 TATTTCCCTAAGCAGTAGTGGAGTAG
1 TATCTCCCTAAGCAGTAGTGGAGTAG
45541482 ATCGCATCAA
Statistics
Matches: 87, Mismatches: 19, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
41 1 0.01
42 4 0.05
43 54 0.62
44 27 0.31
46 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (42 bp):
TATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGATTAGATCT
Found at i:45541502 original size:86 final size:85
Alignment explanation
Indices: 45541155--45541503 Score: 284
Period size: 86 Copynumber: 4.1 Consensus size: 85
45541145 TAAGCCACGA
* ** *
45541155 ATCCTATCTCCCTGAGTAGCAGTAAAGTAGGTTGAA-ATTGTAGATCTTATCTCCCTACGCAGTA
1 ATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTA
45541219 GTGGAGCAGATCGTATCAAA-
66 GTGGAGCAGATCG-ATCAAAG
* * * * * * * ** * * *
45541239 A-CTTATCTTCCTAAGCAGTAGCGGAGCAGATTGAAGACAGTAAATCTTATCT-TC-AAG-TGTA
1 ATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT-
* ** * *
45541300 AG-GAAGCAGATTTAAGCAACG
65 AGTGGAGCAGA-TCGATCAAAG
* *
45541321 AATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTAAAGCA-T-TAGATCTTATCTCCCTAAGCAG
1 -ATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAG-ATTGTAGATCTTATCTCCCTAAGCAG
* ** *
45541384 TAGTGGAGCAGATAGAAGAAACCA
64 TAGTGGAGCAGATCGATCAAA--G
* *
45541408 ATCCTATCTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATTTCCCTAAGCAGTA
1 ATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTA
*
45541473 GTGGAGTAGATCGCATCAAAG
66 GTGGAGCAGATCG-ATCAAAG
*
45541494 ATCTTATCTC
1 ATCCTATCTC
45541504 TCCGAAGTTG
Statistics
Matches: 200, Mismatches: 49, Indels: 30
0.72 0.18 0.11
Matches are distributed among these distances:
81 13 0.06
82 5 0.03
83 37 0.19
84 43 0.22
85 11 0.05
86 53 0.26
87 34 0.17
88 4 0.02
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (85 bp):
ATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGATCAAAG
Found at i:45541902 original size:42 final size:42
Alignment explanation
Indices: 45541855--45541939 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
45541845 AGCCCAAATA
*
45541855 AAATGGCCTAAACAGCCCGAAACCTTAACTGGTTTCAGCAGG
1 AAATGGCCCAAACAGCCCGAAACCTTAACTGGTTTCAGCAGG
*
45541897 AAATGGCCCAAACAGCCCGAAACCTTAACTGGTTTTAGCAGG
1 AAATGGCCCAAACAGCCCGAAACCTTAACTGGTTTCAGCAGG
45541939 A
1 A
45541940 GCTGAAACCC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.19
Consensus pattern (42 bp):
AAATGGCCCAAACAGCCCGAAACCTTAACTGGTTTCAGCAGG
Found at i:45542396 original size:49 final size:51
Alignment explanation
Indices: 45542308--45542407 Score: 168
Period size: 49 Copynumber: 2.0 Consensus size: 51
45542298 AAACAAAAAG
*
45542308 CAAGTTTAAAGGTTTTTCTTCTTCTTCTTCTTCTTAGATTCGTGTTTTTTA
1 CAAGTTTAAAGGTTTTTCTTCTTCTTCTTCTTCTTAGATTCGCGTTTTTTA
*
45542359 CAAGTTTAAAGGTTTTT-TT-TTCTTCTTCTTCTTAGATTTGCGTTTTTTA
1 CAAGTTTAAAGGTTTTTCTTCTTCTTCTTCTTCTTAGATTCGCGTTTTTTA
45542408 TCTCTTATTT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
49 28 0.60
50 2 0.04
51 17 0.36
ACGTcount: A:0.16, C:0.14, G:0.12, T:0.58
Consensus pattern (51 bp):
CAAGTTTAAAGGTTTTTCTTCTTCTTCTTCTTCTTAGATTCGCGTTTTTTA
Found at i:45543193 original size:102 final size:102
Alignment explanation
Indices: 45543017--45543219 Score: 397
Period size: 102 Copynumber: 2.0 Consensus size: 102
45543007 GTCCTAACTT
*
45543017 ACTGGTATTGATCTCTTTTTTAATCCAAGATAGTTAAATATCTCTTAAACAAGCATTTTGTTTGG
1 ACTGGTATTGATCTCTTTTTTAATCCAAGATAGTTAAATATCTCTTAAACAAGCATTTCGTTTGG
45543082 AAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCA
66 AAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCA
45543119 ACTGGTATTGATCTCTTTTTTAATCCAAGATAGTTAAATATCTCTTAAACAAGCATTTCGTTTGG
1 ACTGGTATTGATCTCTTTTTTAATCCAAGATAGTTAAATATCTCTTAAACAAGCATTTCGTTTGG
45543184 AAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTC
66 AAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTC
45543220 GATTTTTCTC
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 100 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (102 bp):
ACTGGTATTGATCTCTTTTTTAATCCAAGATAGTTAAATATCTCTTAAACAAGCATTTCGTTTGG
AAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCA
Found at i:45543317 original size:112 final size:109
Alignment explanation
Indices: 45543177--45543475 Score: 433
Period size: 112 Copynumber: 2.7 Consensus size: 109
45543167 ACAAGCATTT
45543177 CGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAAT
1 CGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAAT
* *
45543242 GGCTTAATATCCTTTTAAAAATTTTTAAAAATACGGCAATGTTTTG
66 GGCTAAATATCCTTTTAAAAA--TTTAAAAATAAGGCAATGTTTTG
* *
45543288 CGTTTGGAAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCCATTTTTCTCATTCAACCAAA
1 CGTTTGG-AAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAA
*
45543353 TGGCTAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTG
65 TGGCTAAATATCCTTTTAAAAATTTAAAAATAAGGCAATGTTTTG
* * * * * *
45543398 CGTTTGGAAATTTGA-AGAACGTACCCTAAGGTGCTGGGTTTCGA--TTTCTCGTTTAACCAAAT
1 CGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAAT
* *
45543460 AGCCAAATATCCTTTT
66 GGCTAAATATCCTTTT
45543476 GAATTTCAAT
Statistics
Matches: 172, Mismatches: 15, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
106 30 0.17
108 24 0.14
109 7 0.04
110 28 0.16
111 7 0.04
112 76 0.44
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (109 bp):
CGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAAT
GGCTAAATATCCTTTTAAAAATTTAAAAATAAGGCAATGTTTTG
Found at i:45544849 original size:30 final size:30
Alignment explanation
Indices: 45544813--45544874 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
45544803 CTATAAAGTG
45544813 CGCCTAGCTGGCCGTGCTTTCCAAAAAGCT
1 CGCCTAGCTGGCCGTGCTTTCCAAAAAGCT
45544843 CGCCTAGCTGGCCGTGCTTTCCAAAAAGCT
1 CGCCTAGCTGGCCGTGCTTTCCAAAAAGCT
45544873 CG
1 CG
45544875 TCCAGTTAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.19, C:0.34, G:0.24, T:0.23
Consensus pattern (30 bp):
CGCCTAGCTGGCCGTGCTTTCCAAAAAGCT
Found at i:45544892 original size:30 final size:30
Alignment explanation
Indices: 45544813--45544895 Score: 87
Period size: 30 Copynumber: 2.8 Consensus size: 30
45544803 CTATAAAGTG
* * *
45544813 CGCCTAGCTGGCCGTGCTTTCCAAAAAGCT
1 CGCCTAGCTAGACGCGCTTTCCAAAAAGCT
* * *
45544843 CGCCTAGCTGGCCGTGCTTTCCAAAAAGCT
1 CGCCTAGCTAGACGCGCTTTCCAAAAAGCT
*
45544873 CGTCC-AGTTAGACGCGCTTTCCA
1 CG-CCTAGCTAGACGCGCTTTCCA
45544896 GTTAAATCGG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 46 0.96
31 2 0.04
ACGTcount: A:0.19, C:0.34, G:0.23, T:0.24
Consensus pattern (30 bp):
CGCCTAGCTAGACGCGCTTTCCAAAAAGCT
Found at i:45545661 original size:40 final size:40
Alignment explanation
Indices: 45545606--45545685 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
45545596 TGATAATAGT
45545606 CTAGCCAACTATTAGTTTGACAAATCTAAAAAAATCGGAA
1 CTAGCCAACTATTAGTTTGACAAATCTAAAAAAATCGGAA
* * *
45545646 CTAGCCAACTTTTAGTTTGACAAATCTAAAGAAATTGGAA
1 CTAGCCAACTATTAGTTTGACAAATCTAAAAAAATCGGAA
45545686 AATGACTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (40 bp):
CTAGCCAACTATTAGTTTGACAAATCTAAAAAAATCGGAA
Found at i:45550763 original size:28 final size:28
Alignment explanation
Indices: 45550727--45550789 Score: 126
Period size: 28 Copynumber: 2.2 Consensus size: 28
45550717 CCAGGTTTAT
45550727 GCAGCAACCTTCAAAGGTTCATTATGGA
1 GCAGCAACCTTCAAAGGTTCATTATGGA
45550755 GCAGCAACCTTCAAAGGTTCATTATGGA
1 GCAGCAACCTTCAAAGGTTCATTATGGA
45550783 GCAGCAA
1 GCAGCAA
45550790 AATGAGTCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (28 bp):
GCAGCAACCTTCAAAGGTTCATTATGGA
Found at i:45553783 original size:26 final size:27
Alignment explanation
Indices: 45553736--45553786 Score: 95
Period size: 26 Copynumber: 1.9 Consensus size: 27
45553726 AAAATTTATC
45553736 AAAATATTATAAATTTTTTTATTTACT
1 AAAATATTATAAATTTTTTTATTTACT
45553763 AAAATATTAT-AATTTTTTTATTTA
1 AAAATATTATAAATTTTTTTATTTA
45553787 TATTAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 14 0.58
27 10 0.42
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (27 bp):
AAAATATTATAAATTTTTTTATTTACT
Found at i:45553878 original size:19 final size:19
Alignment explanation
Indices: 45553854--45553905 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 19
45553844 TTTAATTAAG
45553854 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
* * *
45553873 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTAATT
45553891 TAATAACTCTATTTT
1 TAATAACTCTATTTT
45553906 TTTGGTATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 15 0.56
19 12 0.44
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (19 bp):
TAATAACTCTATTTTAATT
Found at i:45553944 original size:28 final size:26
Alignment explanation
Indices: 45553912--45554004 Score: 143
Period size: 25 Copynumber: 3.5 Consensus size: 26
45553902 TTTTTTTGGT
*
45553912 ATATTTTAGTAAATAAAAAAAATTTATA
1 ATATTTTAATAAAT-AAAAAAA-TTATA
45553940 ATATTTTAATAAATAAAAAAA-TATA
1 ATATTTTAATAAATAAAAAAATTATA
45553965 ATATTTTAATAAATAAAAAAATTATA
1 ATATTTTAATAAATAAAAAAATTATA
*
45553991 ATATTTTGATAAAT
1 ATATTTTAATAAAT
45554005 TTTTATTTTT
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
25 25 0.40
26 17 0.27
27 7 0.11
28 13 0.21
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (26 bp):
ATATTTTAATAAATAAAAAAATTATA
Found at i:45553983 original size:26 final size:26
Alignment explanation
Indices: 45553912--45554004 Score: 134
Period size: 26 Copynumber: 3.5 Consensus size: 26
45553902 TTTTTTTGGT
*
45553912 ATATTTTAGTAAATAAAAAAAATTTATA
1 ATATTTTAATAAATAAAAAAAA--TATA
45553940 ATATTTTAATAAAT-AAAAAAATATA
1 ATATTTTAATAAATAAAAAAAATATA
*
45553965 ATATTTTAATAAATAAAAAAATTATA
1 ATATTTTAATAAATAAAAAAAATATA
*
45553991 ATATTTTGATAAAT
1 ATATTTTAATAAAT
45554005 TTTTATTTTT
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
25 18 0.30
26 23 0.38
27 7 0.11
28 13 0.21
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (26 bp):
ATATTTTAATAAATAAAAAAAATATA
Found at i:45557977 original size:5 final size:5
Alignment explanation
Indices: 45557967--45558003 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
45557957 ATAGATGTTA
*
45557967 AAATT AAATT AAATT AAGTT AAATT AAATT AAATT AA
1 AAATT AAATT AAATT AAATT AAATT AAATT AAATT AA
45558004 CCTAAATGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (5 bp):
AAATT
Found at i:45558009 original size:15 final size:15
Alignment explanation
Indices: 45557967--45558010 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
45557957 ATAGATGTTA
*
45557967 AAATTAAATTAAATT
1 AAATTAAACTAAATT
* *
45557982 AAGTTAAATTAAATT
1 AAATTAAACTAAATT
*
45557997 AAATTAACCTAAAT
1 AAATTAAACTAAAT
45558011 GCAAATGAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (15 bp):
AAATTAAACTAAATT
Found at i:45563800 original size:13 final size:14
Alignment explanation
Indices: 45563766--45563793 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
45563756 ATTGAGATAT
45563766 AAAATTTATATTAG
1 AAAATTTATATTAG
45563780 AAAATTTATATTAG
1 AAAATTTATATTAG
45563794 CAATTTAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (14 bp):
AAAATTTATATTAG
Found at i:45565410 original size:25 final size:25
Alignment explanation
Indices: 45565381--45565432 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
45565371 TAATTCAAGT
*
45565381 TTCAACACTTTTTATATATTT-GAAA
1 TTCAA-ACTTTGTATATATTTGGAAA
* *
45565406 TTCAATCTTTGTATATTTTTGGAAA
1 TTCAAACTTTGTATATATTTGGAAA
45565431 TT
1 TT
45565433 TTTTTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.52
Consensus pattern (25 bp):
TTCAAACTTTGTATATATTTGGAAA
Found at i:45585841 original size:13 final size:13
Alignment explanation
Indices: 45585800--45585844 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
45585790 CAACCATTTT
45585800 CAAAAAAGAGAAAA
1 CAAAAAA-AGAAAA
* *
45585814 GAAAAGAAGAAAAA
1 CAAAAAAAG-AAAA
45585828 CAAAAAAAGAAAA
1 CAAAAAAAGAAAA
45585841 CAAA
1 CAAA
45585845 GAAGGGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
13 10 0.38
14 16 0.62
ACGTcount: A:0.80, C:0.07, G:0.13, T:0.00
Consensus pattern (13 bp):
CAAAAAAAGAAAA
Found at i:45586587 original size:48 final size:48
Alignment explanation
Indices: 45586516--45586611 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
45586506 GTAACCTCTA
45586516 TCCGGTAAGCTACCTAAACCCGCCGTATGTAAATTTGTATCTTAAAAT
1 TCCGGTAAGCTACCTAAACCCGCCGTATGTAAATTTGTATCTTAAAAT
*
45586564 TCCGGTAAGCTACCTAAACCCGCCGTATGTAAATTTGTATCTTCAAAT
1 TCCGGTAAGCTACCTAAACCCGCCGTATGTAAATTTGTATCTTAAAAT
45586612 GATAAAGAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (48 bp):
TCCGGTAAGCTACCTAAACCCGCCGTATGTAAATTTGTATCTTAAAAT
Found at i:45588644 original size:21 final size:20
Alignment explanation
Indices: 45588606--45588644 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
45588596 TATTAATAAT
*
45588606 TAAGTCTCTGTATCTGTGAC
1 TAAGTCTCTGTATATGTGAC
*
45588626 TAAGTGCTCTGTTTATGTG
1 TAAGT-CTCTGTATATGTG
45588645 TTTGAGGTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.18, C:0.15, G:0.23, T:0.44
Consensus pattern (20 bp):
TAAGTCTCTGTATATGTGAC
Found at i:45592122 original size:17 final size:16
Alignment explanation
Indices: 45592089--45592144 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 16
45592079 CATAATATAG
*
45592089 TATAAATAATTATGAT
1 TATAAATAATAATGAT
45592105 TATAAATAATGAATGAT
1 TATAAATAAT-AATGAT
**
45592122 TATATGTAATATTATGAT
1 TATAAATAATA--ATGAT
45592140 TATAA
1 TATAA
45592145 TATGTATAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 11 0.33
17 13 0.39
18 9 0.27
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (16 bp):
TATAAATAATAATGAT
Found at i:45593353 original size:5 final size:5
Alignment explanation
Indices: 45593345--45593372 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
45593335 AATTTTATAA
45593345 AAATT AAATT AAATT AAATT AAATT AAA
1 AAATT AAATT AAATT AAATT AAATT AAA
45593373 ATTTTTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (5 bp):
AAATT
Found at i:45618879 original size:33 final size:33
Alignment explanation
Indices: 45618840--45618911 Score: 135
Period size: 33 Copynumber: 2.2 Consensus size: 33
45618830 ATTATAAAGC
*
45618840 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
45618873 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
45618906 ATGTAT
1 ATGTAT
45618912 GATTCAAGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.35, C:0.06, G:0.17, T:0.43
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTAT
Found at i:45619016 original size:33 final size:33
Alignment explanation
Indices: 45618978--45619050 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 33
45618968 TCATTAAAGC
*
45618978 ATGTATAATTGACCTAAAATTAATTGTTGGCGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGCAT
*
45619011 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
1 ATGTATAATTGACCTAAAATTAATTGTTGGCAT
45619044 ATGTATA
1 ATGTATA
45619051 CTTCAAGTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGCAT
Found at i:45619082 original size:138 final size:138
Alignment explanation
Indices: 45618834--45619155 Score: 610
Period size: 138 Copynumber: 2.3 Consensus size: 138
45618824 AAAGAAATTA
45618834 TAAAGCATGTATAATTGACCTAAAATTAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTG
1 TAAAGCATGTATAATTGACCTAAAATTAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTG
45618899 TTGGTATATGTATGATTCAAGTTTTAAAACTTTTATAACATTTAATTTCGTATAAATATATTGAT
66 TTGGTATATGTATGATTCAAGTTTTAAAACTTTTATAACATTTAATTTCGTATAAATATATTGAT
45618964 TAGTTCAT
131 TAGTTCAT
*
45618972 TAAAGCATGTATAATTGACCTAAAATTAATTGTTGGCGTATGTATAATTGACCTAAAATTAATTG
1 TAAAGCATGTATAATTGACCTAAAATTAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTG
45619037 TTGGTATATGTAT-ACTTCAAGTTTTAAAACTTTTATAACATTTAATTTCGTATAAATATATTGA
66 TTGGTATATGTATGA-TTCAAGTTTTAAAACTTTTATAACATTTAATTTCGTATAAATATATTGA
45619101 TTAGTTCAT
130 TTAGTTCAT
*
45619110 TAAAGCATGTATAATTGACCTAAAATTAATTGTTGGTATATGTATA
1 TAAAGCATGTATAATTGACCTAAAATTAATTGTTGGTGTATGTATA
45619156 CTTCAAGTTT
Statistics
Matches: 180, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
137 1 0.01
138 179 0.99
ACGTcount: A:0.37, C:0.08, G:0.13, T:0.43
Consensus pattern (138 bp):
TAAAGCATGTATAATTGACCTAAAATTAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTG
TTGGTATATGTATGATTCAAGTTTTAAAACTTTTATAACATTTAATTTCGTATAAATATATTGAT
TAGTTCAT
Found at i:45619193 original size:105 final size:105
Alignment explanation
Indices: 45619011--45619224 Score: 428
Period size: 105 Copynumber: 2.0 Consensus size: 105
45619001 TTGTTGGCGT
45619011 ATGTATAATTGACCTAAAATTAATTGTTGGTATATGTATACTTCAAGTTTTAAAACTTTTATAAC
1 ATGTATAATTGACCTAAAATTAATTGTTGGTATATGTATACTTCAAGTTTTAAAACTTTTATAAC
45619076 ATTTAATTTCGTATAAATATATTGATTAGTTCATTAAAGC
66 ATTTAATTTCGTATAAATATATTGATTAGTTCATTAAAGC
45619116 ATGTATAATTGACCTAAAATTAATTGTTGGTATATGTATACTTCAAGTTTTAAAACTTTTATAAC
1 ATGTATAATTGACCTAAAATTAATTGTTGGTATATGTATACTTCAAGTTTTAAAACTTTTATAAC
45619181 ATTTAATTTCGTATAAATATATTGATTAGTTCATTAAAGC
66 ATTTAATTTCGTATAAATATATTGATTAGTTCATTAAAGC
45619221 ATGT
1 ATGT
45619225 TCAAAGTTTT
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 109 1.00
ACGTcount: A:0.37, C:0.08, G:0.11, T:0.44
Consensus pattern (105 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTATATGTATACTTCAAGTTTTAAAACTTTTATAAC
ATTTAATTTCGTATAAATATATTGATTAGTTCATTAAAGC
Found at i:45619256 original size:37 final size:37
Alignment explanation
Indices: 45619201--45619287 Score: 138
Period size: 37 Copynumber: 2.4 Consensus size: 37
45619191 GTATAAATAT
* * *
45619201 ATTGATTAGTTCATTAAAGCATGTTCAAAGTTTTAAC
1 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
*
45619238 ATTGATTAGTTTAATAAAGCTTGTTCAAAGTTTGAAC
1 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
45619275 ATTGATTAGTTTA
1 ATTGATTAGTTTA
45619288 TTTATTTATG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.34, C:0.08, G:0.15, T:0.43
Consensus pattern (37 bp):
ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
Found at i:45620568 original size:69 final size:69
Alignment explanation
Indices: 45620458--45620597 Score: 185
Period size: 69 Copynumber: 2.0 Consensus size: 69
45620448 AATCAAGTTC
*
45620458 CAGTTTCATATTCTACTGACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAACTGCC
1 CAGTTTCATATTCTACTCACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAACTGCC
45620523 AGAA
66 AGAA
* * * * * *
45620527 CAGTTTCATCA-TCTACTCACTAGCAAA-CTAATAACAGTTTCCAGCAGACTATCAAAACAATTT
1 CAGTTTCAT-ATTCTACTCACTAACAAATC-AAGAACAATTTCCAGCAGACAATCAAAACAACTG
45620590 CCAGAA
64 CCAGAA
45620596 CA
1 CA
45620598 AACCAACAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
68 1 0.02
69 60 0.97
70 1 0.02
ACGTcount: A:0.41, C:0.26, G:0.09, T:0.24
Consensus pattern (69 bp):
CAGTTTCATATTCTACTCACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAACTGCC
AGAA
Found at i:45621334 original size:46 final size:47
Alignment explanation
Indices: 45621266--45621358 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 47
45621256 ATTGTTTTCA
*
45621266 AAGGATTGTCAGTCTTATGCTGATGAAAAGACATAAATGCATAATTT
1 AAGGATTGTCAGTCCTATGCTGATGAAAAGACATAAATGCATAATTT
* *
45621313 AAGGATT-TCGGTCCTATGCTGATGAAAAGACATACATGCATAATTT
1 AAGGATTGTCAGTCCTATGCTGATGAAAAGACATAAATGCATAATTT
45621359 TCCCCACAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
46 36 0.84
47 7 0.16
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (47 bp):
AAGGATTGTCAGTCCTATGCTGATGAAAAGACATAAATGCATAATTT
Done.