Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 152 of 205
Found at i:45884508 original size:44 final size:45
Alignment explanation
Indices: 45884455--45884707 Score: 196
Period size: 44 Copynumber: 5.7 Consensus size: 45
45884445 TTGTCGTTTT
* * *
45884455 AATCCGCTCCACTGCAACTTCAGGGAGAT-GGAATTAG-TAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG-ATTAGCTAGCTTC
* * * *
45884499 AA-CATGCTCCACTACAACTTTAGGGAGATAAGATTCGCTATCTTC
1 AATC-TGCTCCACTGCAACTTCAGGGAGATAAGATTAGCTAGCTTC
* ** * *
45884544 AATCTGCTCCACTGCAACTTCAGAGAGATAAGGCTGGTTA-CTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGCTAGCTTC
* * * ** *
45884588 AGTCTGCACCACTGCAACTTCAGAGG-GATAAGACTTTGCTTTCTGC
1 AATCTGCTCCACTGCAACTTCAG-GGAGATAAGA-TTAGCTAGCTTC
* * * * *
45884634 AGTCTGCTCCACTACAACTTCAGGTAGATAAGACTTA--TAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTAGCTAGCTTC
*
45884678 AATCTGCTCCACTACAACTTCAGGGAGATA
1 AATCTGCTCCACTGCAACTTCAGGGAGATA
45884708 GAATTATTCA
Statistics
Matches: 168, Mismatches: 33, Indels: 16
0.77 0.15 0.07
Matches are distributed among these distances:
43 1 0.01
44 90 0.54
45 42 0.25
46 35 0.21
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGCTAGCTTC
Found at i:45884684 original size:90 final size:88
Alignment explanation
Indices: 45884455--45884707 Score: 260
Period size: 90 Copynumber: 2.8 Consensus size: 88
45884445 TTGTCGTTTT
* * * *
45884455 AATCCGCTCCACTGCAACTTCAGGGAGAT-GGAATTAGTAGCTTTAA-CATGCTCCACTACAACT
1 AATCTGCTCCACTGCAACTTCA-GGAGATAAGACTTA-TAACTTTAATC-TGCTCCACTACAACT
* *
45884518 TTAGGGAGATAAGATTCGCTATCTTC
63 TCAGGGAGATAAGATTCGCTATCTGC
* ** * * * * *
45884544 AATCTGCTCCACTGCAACTTCAGAGAGATAAGGCTGGTTACTTCAGTCTGCACCACTGCAACTTC
1 AATCTGCTCCACTGCAACTTCAG-GAGATAAGACTTATAACTTTAATCTGCTCCACTACAACTTC
* *
45884609 AGAGG-GATAAGACTTTGCTTTCTGC
65 AG-GGAGATAAGA-TTCGCTATCTGC
* *
45884634 AGTCTGCTCCACTACAACTTCAGGTAGATAAGACTTATAACTTTAATCTGCTCCACTACAACTTC
1 AATCTGCTCCACTGCAACTTCAGG-AGATAAGACTTATAACTTTAATCTGCTCCACTACAACTTC
45884699 AGGGAGATA
65 AGGGAGATA
45884708 GAATTATTCA
Statistics
Matches: 131, Mismatches: 26, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
88 1 0.01
89 57 0.44
90 73 0.56
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (88 bp):
AATCTGCTCCACTGCAACTTCAGGAGATAAGACTTATAACTTTAATCTGCTCCACTACAACTTCA
GGGAGATAAGATTCGCTATCTGC
Found at i:45886651 original size:12 final size:13
Alignment explanation
Indices: 45886628--45886656 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
45886618 TCCTTCTTTA
45886628 TTATTATTATTTT
1 TTATTATTATTTT
45886641 TTATT-TTATTTT
1 TTATTATTATTTT
45886653 TTAT
1 TTAT
45886657 AACTCAAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
TTATTATTATTTT
Found at i:45886770 original size:44 final size:45
Alignment explanation
Indices: 45886649--45886771 Score: 131
Period size: 45 Copynumber: 2.8 Consensus size: 45
45886639 TTTTATTTTA
* * * * * *
45886649 TTTTTTATAACTCAAAGCGTCCTTTGTGGGTTTTCACCTTGGTTT
1 TTTTTTAGAACTCAAAGCGCCCTTTGCGAGTTTTCACCTTAGTTC
* * * *
45886694 TTTTTTAGAACTTAAGGCGCCCATTGCAAGTTTTCACCTTAG-TC
1 TTTTTTAGAACTCAAAGCGCCCTTTGCGAGTTTTCACCTTAGTTC
* *
45886738 TTTTTTAGGACTCAAAGTGCCCTTTGCGAGTTTT
1 TTTTTTAGAACTCAAAGCGCCCTTTGCGAGTTTT
45886772 TTCCTTGGTC
Statistics
Matches: 62, Mismatches: 16, Indels: 1
0.78 0.20 0.01
Matches are distributed among these distances:
44 29 0.47
45 33 0.53
ACGTcount: A:0.19, C:0.20, G:0.18, T:0.44
Consensus pattern (45 bp):
TTTTTTAGAACTCAAAGCGCCCTTTGCGAGTTTTCACCTTAGTTC
Found at i:45890203 original size:16 final size:16
Alignment explanation
Indices: 45890178--45890212 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
45890168 TTCTATGATG
*
45890178 AAATGTCATGCAATCA
1 AAATGCCATGCAATCA
45890194 AAATGCCATGCAATCA
1 AAATGCCATGCAATCA
45890210 AAA
1 AAA
45890213 CAAAACACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.49, C:0.20, G:0.11, T:0.20
Consensus pattern (16 bp):
AAATGCCATGCAATCA
Found at i:45892380 original size:3 final size:3
Alignment explanation
Indices: 45892275--45892361 Score: 57
Period size: 3 Copynumber: 29.0 Consensus size: 3
45892265 ATTAATTTAT
* * * * ** * *
45892275 ATA AAA ATA AAA ATA ATA ATA GTA TTA ATA GCA ATA ACA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
45892323 ATA ATA ACA ACA ACA ACA ATA ATA ATA CTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
45892362 TTAAACTGAT
Statistics
Matches: 65, Mismatches: 19, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.63, C:0.08, G:0.03, T:0.25
Consensus pattern (3 bp):
ATA
Found at i:45904309 original size:3 final size:3
Alignment explanation
Indices: 45904294--45904428 Score: 103
Period size: 3 Copynumber: 44.3 Consensus size: 3
45904284 ATTTTGATAA
* * * ** *
45904294 TAT TAT CAT TAT TAT TAT TTT TAA TAT TGC TAT TAT TAT CAT CCTAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT --TAT
* *
45904341 TAT TAT TAT TAT TAT TAT TAT T-T TCAT TAT TAC TAA TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * * *
45904386 TTT TAT T-T TAC TAC TCT TAT TAT TAT TAT ATAT TGT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT T
45904429 TTTAAATTGT
Statistics
Matches: 103, Mismatches: 23, Indels: 12
0.75 0.17 0.09
Matches are distributed among these distances:
2 4 0.04
3 92 0.89
4 5 0.05
5 2 0.02
ACGTcount: A:0.30, C:0.07, G:0.01, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:45908130 original size:8 final size:8
Alignment explanation
Indices: 45908117--45908145 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
45908107 AGTAGAGGCA
45908117 AAAAAAAT
1 AAAAAAAT
45908125 AAAAAAAT
1 AAAAAAAT
45908133 AAAAAAAT
1 AAAAAAAT
45908141 AAAAA
1 AAAAA
45908146 CAAAACAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAAAAT
Found at i:45908619 original size:17 final size:17
Alignment explanation
Indices: 45908597--45908645 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
45908587 ACTTCACTTG
*
45908597 AAAAGAAATGAAAAGAA
1 AAAAGAAAAGAAAAGAA
45908614 AAAAGAAAAGAAAAGAA
1 AAAAGAAAAGAAAAGAA
* *
45908631 GAATGAAAAAGAAAA
1 AAAAG-AAAAGAAAA
45908646 ATGAGAGGCC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 19 0.68
18 9 0.32
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (17 bp):
AAAAGAAAAGAAAAGAA
Found at i:45909800 original size:89 final size:89
Alignment explanation
Indices: 45909566--45909800 Score: 272
Period size: 89 Copynumber: 2.6 Consensus size: 89
45909556 CAAGTCTTAT
** * * * * * *
45909566 CTCCCTAAAATTGTAGCGGAATAGACTAAAAACAGTAGATCTTGTCTTCCTGTATTGGCAGCGAA
1 CTCCCTAAGTTTGCAGCGGAACAGACTGAAGATAGTAGATCTTGTCTTCCTGTACTGGCAGCGAA
*
45909631 GCAGATCGAAGACACCAGCCTGAC
66 GCAAATCGAAGACACCAGCCTGAC
* * ** * *
45909655 CTCCCTAAGTTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGTCTTCCTATACTGGCAGCGAA
1 CTCCCTAAGTTTGCAGCGGAACAGACTGAAGATAGTAGATCTTGTCTTCCTGTACTGGCAGCGAA
*
45909720 GCAAATCGAAGACACTAGCCTGAC
66 GCAAATCGAAGACACCAGCCTGAC
* * * * **
45909744 GTCCTTGAGTTTTCAGCGGAACAGACTGAAGATAGTAGATCTTGTCTTTTTGTACTG
1 CTCCCTAAGTTTGCAGCGGAACAGACTGAAGATAGTAGATCTTGTCTTCCTGTACTG
45909801 ACAATTAAGT
Statistics
Matches: 118, Mismatches: 28, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
89 118 1.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (89 bp):
CTCCCTAAGTTTGCAGCGGAACAGACTGAAGATAGTAGATCTTGTCTTCCTGTACTGGCAGCGAA
GCAAATCGAAGACACCAGCCTGAC
Found at i:45910028 original size:50 final size:50
Alignment explanation
Indices: 45909855--45910337 Score: 205
Period size: 50 Copynumber: 9.7 Consensus size: 50
45909845 GCAGTCGAAC
* * * *
45909855 AGATTGAAGCTACAACGGCGAATCTT-GTTCCCCAACATTGCAATTTAAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCCGACATTGCAATTAAAA
* ** * ** * ** **
45909904 AGATTAAAGCCGTAACGACGAATCTTACTTTCCTGGA-AGTTGCAGTGGAGC
1 AGATTGAAGCCACAACGGCGAATCTTAC-TTCCCCGACA-TTGCAATTAAAA
* * * ** * * *
45909955 AGATTAAAGCTACGATAGTGAATCTTGCTTCCCCGATATTGCAATTAAAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCCGACATTGCAATTAAAA
* * * * ** * ** **
45910005 AGATTGAAGCCGCAACGACGAATCTTACTTCCCTGGCGGTGCAGTGGAGC
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCCGACATTGCAATTAAAA
* * * ** * * *
45910055 AGATTAAAGCTACGACGTTGAATCTTGCTTTCCCAACATTGCAATTAAAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCCGACATTGCAATTAAAA
* * * * * * * * ** **
45910105 ATATTGAAGCCGCAATGGCGAATCTTACTTCTCTGGCAGTGCAGTGGAGT
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCCGACATTGCAATTAAAA
* * * * * *
45910155 AGATTAAAGCTACGACGGTGAATCTTGCTTCACCGACATTGCAATTAAAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCCGACATTGCAATTAAAA
* * ** * * ** **
45910205 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGC
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCCGACATTGCAATTAAAA
* * * * * *
45910255 AGATTAAAGCTACGATGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCCGACATTGCAATTAAAA
* ** **
45910305 AGATTAAAGCTGCAACAACGAATCTTACTTCCC
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCC
45910338 TGGCGGTGTA
Statistics
Matches: 287, Mismatches: 143, Indels: 7
0.66 0.33 0.02
Matches are distributed among these distances:
49 21 0.07
50 234 0.82
51 32 0.11
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (50 bp):
AGATTGAAGCCACAACGGCGAATCTTACTTCCCCGACATTGCAATTAAAA
Found at i:45910048 original size:100 final size:100
Alignment explanation
Indices: 45909874--45910402 Score: 713
Period size: 100 Copynumber: 5.3 Consensus size: 100
45909864 CTACAACGGC
* * * * *
45909874 GAATCTTG-TTCCCCAACATTGCAATTTAAAAGATTAAAGCCGTAACGACGAATCTTACTTTCCT
1 GAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACGACGAATCTTACTTCCCT
* *
45909938 GGAAGTTGCAGTGGAGCAGATTAAAGCTACGATAGT
66 GG-CGGTGCAGTGGAGCAGATTAAAGCTACGATAGT
*
45909974 GAATCTTGCTTCCCCGATATTGCAATTAAAAAGATTGAAGCCGCAACGACGAATCTTACTTCCCT
1 GAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACGACGAATCTTACTTCCCT
*
45910039 GGCGGTGCAGTGGAGCAGATTAAAGCTACGA-CGTT
66 GGCGGTGCAGTGGAGCAGATTAAAGCTACGATAG-T
* * * * * *
45910074 GAATCTTGCTTTCCCAACATTGCAATTAAAAATATTGAAGCCGCAATGGCGAATCTTACTTCTCT
1 GAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACGACGAATCTTACTTCCCT
* * **
45910139 GGCAGTGCAGTGGAGTAGATTAAAGCTACGACGGT
66 GGCGGTGCAGTGGAGCAGATTAAAGCTACGATAGT
* * *
45910174 GAATCTTGCTTCACCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCT
1 GAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACGACGAATCTTACTTCCCT
* *
45910239 GGCGGTGTAGTGGAGCAGATTAAAGCTACGATGGT
66 GGCGGTGCAGTGGAGCAGATTAAAGCTACGATAGT
* * *
45910274 GAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTAAAGCTGCAACAACGAATCTTACTTCCCT
1 GAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACGACGAATCTTACTTCCCT
* * * *
45910339 GGCGGTGTAGTGG-GACAGATTGAAGCTACAAAAGT
66 GGCGGTGCAGTGGAG-CAGATTAAAGCTACGATAGT
* *
45910374 GAATCTTGCTTCCTCGACATTGCAGTTAA
1 GAATCTTGCTTCCCCGACATTGCAATTAA
45910403 TTAGATAGAA
Statistics
Matches: 383, Mismatches: 42, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
99 2 0.01
100 328 0.86
101 53 0.14
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (100 bp):
GAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACGACGAATCTTACTTCCCT
GGCGGTGCAGTGGAGCAGATTAAAGCTACGATAGT
Found at i:45910378 original size:50 final size:49
Alignment explanation
Indices: 45910222--45910386 Score: 125
Period size: 50 Copynumber: 3.3 Consensus size: 49
45910212 AGCCACAACG
* **
45910222 GCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTAAAGCTACGATG
1 GCGAATCTTACTTCCCTGGCGGTGTAGTGGA-CAGATTAAAGCTACAAAA
* * * * ** * * ** * *
45910272 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTAAAGCTGCAACAA
1 GCGAATCTTACTTCCCTGGCGGTG-TAGTGGACAGATTAAAGCTACAA-AA
*
45910323 -CGAATCTTACTTCCCTGGCGGTGTAGTGGGACAGATTGAAGCTACAAAA
1 GCGAATCTTACTTCCCTGGCGGTGTAGT-GGACAGATTAAAGCTACAAAA
* *
45910372 GTGAATCTTGCTTCC
1 GCGAATCTTACTTCC
45910387 TCGACATTGC
Statistics
Matches: 81, Mismatches: 30, Indels: 8
0.68 0.25 0.07
Matches are distributed among these distances:
49 4 0.05
50 74 0.91
51 3 0.04
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
GCGAATCTTACTTCCCTGGCGGTGTAGTGGACAGATTAAAGCTACAAAA
Found at i:45910554 original size:85 final size:88
Alignment explanation
Indices: 45910421--45910880 Score: 239
Period size: 85 Copynumber: 5.3 Consensus size: 88
45910411 AAGCCAATCC
* * * ** * **
45910421 TATCTCCCTGAAATTGCAGTGTAGCGGATTAAAAACACAGATCTTATCTCTTTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAGAAAAAACACAGATCCTATCTCACTGAAGTTGCAGTA
***
45910486 GAGCAGA-TCGCATC-CAG-TCT
66 GAGCAGATTAAAATCACAGATCT
*
45910506 TATCTCCCTGAAGTTGCAGTGGAGCAGACGAAAGAAAC-CA-ATCCTATCTCACTGAAGTTGTAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-GAAA-AAACACAGATCCTATCTCACTGAAGTTGCAG
*
45910569 TGGAGCAGATTAAAATCACAGATCT
64 TAGAGCAGATTAAAATCACAGATCT
* * * **** * *
45910594 TATCTCTCTGAAGTTGCAGTAGAGTAGA-TCGCATC-CAG-TCTTATCTC-CTTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAGAAAAAACACAGATCCTATCTCAC-TGAAGTTGCAGT
* **
45910655 GGAGTGGATTAAAATCACAGATCT
65 AGAGCAGATTAAAATCACAGATCT
* * * * **** * * * * *
45910679 TATCTCTCTGAAGTTGAAGTAGAGTAGA-TTGCATC-CAG-TCTTATCTCCCTAAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAGAAAAAACACAGATCCTATCTCACTGAAGTTGCAGTA
** * *
45910741 GAGCAGAAGAAAGA-AACCA-ATCC
66 GAGCAGATTAAA-ATCA-CAGATCT
* * ** * * * *
45910764 TATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTAAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAGAAAAAACACAGATCCTATCTCACTGAAGTTGCAGTA
* * * * * *
45910829 GAGTAGATCACACCATAATA-AGCCT
66 GAGCAGATTA-A-AATCACAGA-TCT
45910854 TATCTCCCTGAAGTTGCAGTGGAGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAG
45910881 GTTGAAGATA
Statistics
Matches: 304, Mismatches: 54, Indels: 29
0.79 0.14 0.07
Matches are distributed among these distances:
84 1 0.00
85 188 0.62
86 16 0.05
87 10 0.03
88 57 0.19
89 4 0.01
90 28 0.09
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (88 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGAGAAAAAACACAGATCCTATCTCACTGAAGTTGCAGTA
GAGCAGATTAAAATCACAGATCT
Found at i:45910683 original size:129 final size:129
Alignment explanation
Indices: 45910421--45910823 Score: 447
Period size: 129 Copynumber: 3.1 Consensus size: 129
45910411 AAGCCAATCC
* * * * * * *
45910421 TATCTCCCTGAAATTGCAGTGTAGCGGATTAAAAACACAGATCTTATCTCTTTGAAGTTGCAGTA
1 TATCTCTCTGAAGTTGAAGTGGAGCAGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGTA
* * * ** *
45910486 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAAGA-AACCA-ATC
66 GAGAAGATCGCATCCAGTCTTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAA-ATCA-CAGATC
*
45910549 C
129 T
* *
45910550 TATCTCACTGAAGTTGTAGTGGAGCAGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCTCTGAAGTTGAAGTGGAGCAGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGTA
* *
45910615 GAGTAGATCGCATCCAGTCTTATCTCCTTGAAGTTGCAGTGGAGTGGATTAAAATCACAGATCT
66 GAGAAGATCGCATCCAGTCTTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCT
* * ** * *
45910679 TATCTCTCTGAAGTTGAAGTAGAGTAGATT-GCATC-CAG-TCTTATCTCCCTAAAGTTGCAGTG
1 TATCTCTCTGAAGTTGAAGTGGAGCAGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGT-
** * * * *
45910741 GAGCAGAAGAAAGAAACCAATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATCACAGAT
65 -AG-AGAAGATCGCATCCAGTCTTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATCACAGAT
45910806 CT
128 CT
*
45910808 TATCTCTCTAAAGTTG
1 TATCTCTCTGAAGTTG
45910824 CAGTAGAGTA
Statistics
Matches: 237, Mismatches: 32, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
126 21 0.09
127 3 0.01
128 8 0.03
129 205 0.86
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (129 bp):
TATCTCTCTGAAGTTGAAGTGGAGCAGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGTA
GAGAAGATCGCATCCAGTCTTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCT
Found at i:45910762 original size:214 final size:214
Alignment explanation
Indices: 45910421--45910837 Score: 692
Period size: 214 Copynumber: 1.9 Consensus size: 214
45910411 AAGCCAATCC
* * *
45910421 TATCTCCCTGAAATTGCAGTGTAGCGGATTAAAAACACAGATCTTATCTCTTTGAAGTTGCAGTA
1 TATCTCCCTGAAATTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGAAGTA
* *
45910486 GAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCT
66 GAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGAAGAAAGAAACCAATCCT
* *
45910551 ATCTCAC-TGAAGTTGTAGTGGAGCAGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGTA
131 ATCTC-CTTGAAGTTGCAGTGGAGCAGATTAAAATCACAGATCTTATCTCTCTAAAGTTGCAGTA
45910615 GAGTAGATCGCATCCAGTCT
195 GAGTAGATCGCATCCAGTCT
* * * *
45910635 TATCTCCTTGAAGTTGCAGTGGAGTGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGAAGTA
1 TATCTCCCTGAAATTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGAAGTA
* *
45910700 GAGTAGATTGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGAAGAAAGAAACCAATCCT
66 GAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGAAGAAAGAAACCAATCCT
*
45910765 ATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTAAAGTTGCAGTAG
131 ATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAATCACAGATCTTATCTCTCTAAAGTTGCAGTAG
45910830 AGTAGATC
196 AGTAGATC
45910838 ACACCATAAT
Statistics
Matches: 188, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
213 1 0.01
214 187 0.99
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (214 bp):
TATCTCCCTGAAATTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGAAGTA
GAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGAAGAAAGAAACCAATCCT
ATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAATCACAGATCTTATCTCTCTAAAGTTGCAGTAG
AGTAGATCGCATCCAGTCT
Found at i:45910905 original size:44 final size:43
Alignment explanation
Indices: 45910414--45910967 Score: 255
Period size: 44 Copynumber: 12.8 Consensus size: 43
45910404 TAGATAGAAG
* * * * *
45910414 CCAATCCTATCTCCCTGAAATTGCAGTGTAGC-GGATT-AAAAA
1 CCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGG-TTGAACAT
** * * *
45910456 CACAGATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATCG--CAT
1 C-CA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAACAT
* **
45910499 CCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAAGAA-A-
1 CCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG--G-TTGAACAT
* * * * *
45910543 CCAATCCTATCTCACTGAAGTTGTAGTGGAGCAGATT-AAAAT
1 CCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAACAT
* * * * *
45910585 CACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCG--CAT
1 C-CA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAACAT
* * * *
45910628 CCAGTCTTATCTCCTTGAAGTTGCAGTGGAG-TGGATT-AAAAT
1 CCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGG-TTGAACAT
* * * * *
45910670 CACAGATCTTATCTCTCTGAAGTTGAAGTAGAGTAGATTG--CAT
1 C-CA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAACAT
* * **
45910713 CCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGAAGAAAGAA-A-
1 CCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG--G-TTGAACAT
* * *
45910757 CCAATCCTATCTCCTTGAAGTTGCAGTGGAGC-GGATT-AAAAT
1 CCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGG-TTGAACAT
* * * * * *
45910799 CACAGATCTTATCTCTCTAAAGTTGCAGTAGAGTA-GATCACACCAT
1 C-CA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGA-A-CAT
** * *
45910845 AATAAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGAT
1 -CCAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAACAT
* *
45910890 ACCAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGC-T
1 -CCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAA-CAT
* ** * *
45910934 ACTAATAATATCTCCTTGAAGTTACAGTGGAGCA
1 -CCAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
45910968 AATTAAAACG
Statistics
Matches: 382, Mismatches: 92, Indels: 74
0.70 0.17 0.14
Matches are distributed among these distances:
40 5 0.01
41 81 0.21
42 12 0.03
43 18 0.05
44 224 0.59
45 11 0.03
46 28 0.07
47 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (43 bp):
CCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAACAT
Found at i:45910916 original size:134 final size:129
Alignment explanation
Indices: 45910632--45910927 Score: 389
Period size: 129 Copynumber: 2.3 Consensus size: 129
45910622 TCGCATCCAG
* *
45910632 TCTTATCTCCTTGAAGTTGCAGTGGAGTGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGAA
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTAAAGTTGAA
** *
45910697 GTAGAGTAGATTGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGAAGAAAGAAACCAA
66 GTAGAGTAGATCACATCCAGCCTTATCTCCCTAAAGTTGCAGTGGAGCAGAAGAAAGAAACCAA
* *
45910761 TCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTAAAGTTGCA
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTAAAGTTGAA
* **
45910826 GTAGAGTAGATCACA-CCATAATAAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTG-AAGA
66 GTAGAGTAGATCACATCC------AGCCTTATCTCCCTAAAGTTGCAGTGGAGCA-GAAGAAAGA
*
45910889 TACCAA
124 AACCAA
* * *
45910895 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCGGATT
45910928 GAAGCTACTA
Statistics
Matches: 145, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
128 2 0.01
129 74 0.51
134 67 0.46
135 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (129 bp):
TCTTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTAAAGTTGAA
GTAGAGTAGATCACATCCAGCCTTATCTCCCTAAAGTTGCAGTGGAGCAGAAGAAAGAAACCAA
Found at i:45912813 original size:3 final size:3
Alignment explanation
Indices: 45912805--45912928 Score: 83
Period size: 3 Copynumber: 41.0 Consensus size: 3
45912795 GATTATCATG
* * ** *
45912805 ATT ATT ATT TTT AAT ATT GCT ATT ATT ATC ATCGT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT--T ATT ATT ATT ATT
* *
45912852 ATT ATT ATT ATT ATT -TT CATT ATT ACT AAT ATT ATT ATT -TT ATT
1 ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
45912896 -TT ACT ACT CTT ATT ATT ATAT ACT GTT ATT ATT
1 ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT
45912929 TTTAAATTGT
Statistics
Matches: 93, Mismatches: 21, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
2 6 0.06
3 81 0.87
4 4 0.04
5 2 0.02
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:45913056 original size:21 final size:20
Alignment explanation
Indices: 45913032--45913116 Score: 63
Period size: 21 Copynumber: 4.2 Consensus size: 20
45913022 TCAGTTTGTT
45913032 TTATTTTTTATTTTCATTTTA
1 TTATTTTTTATTTT-ATTTTA
*
45913053 TTA--TTTCA--TTATTTTA
1 TTATTTTTTATTTTATTTTA
*
45913069 TTGTTTTTTATTATTATTTATA
1 TTATTTTTTATT-TTATTT-TA
*
45913091 TTATTTTTGT-TTTTACTCTTA
1 TTATTTTT-TATTTTA-TTTTA
45913112 TTATT
1 TTATT
45913117 CCTTTTTGGT
Statistics
Matches: 51, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
16 8 0.16
17 2 0.04
18 4 0.08
19 4 0.08
21 19 0.37
22 13 0.25
23 1 0.02
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.73
Consensus pattern (20 bp):
TTATTTTTTATTTTATTTTA
Found at i:45913066 original size:29 final size:29
Alignment explanation
Indices: 45913032--45913098 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
45913022 TCAGTTTGTT
45913032 TTATTTTTTATTTTCATT-TTATTATTT-CA
1 TTATTTTTTATTTT--TTATTATTATTTACA
* *
45913061 TTATTTTATTGTTTTTTATTATTATTTATA
1 TTATTTT-TTATTTTTTATTATTATTTACA
45913091 TTATTTTT
1 TTATTTTT
45913099 GTTTTTACTC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
28 2 0.06
29 17 0.52
30 14 0.42
ACGTcount: A:0.21, C:0.03, G:0.01, T:0.75
Consensus pattern (29 bp):
TTATTTTTTATTTTTTATTATTATTTACA
Found at i:45913075 original size:8 final size:8
Alignment explanation
Indices: 45913047--45913097 Score: 54
Period size: 8 Copynumber: 6.6 Consensus size: 8
45913037 TTTTATTTTC
45913047 ATTTTATT
1 ATTTTATT
*
45913055 ATTTCATT
1 ATTTTATT
45913063 ATTTTATT
1 ATTTTATT
*
45913071 GTTTT-TT
1 ATTTTATT
45913078 A--TTATT
1 ATTTTATT
45913084 ATTTATATT
1 ATTT-TATT
45913093 ATTTT
1 ATTTT
45913098 TGTTTTTACT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
5 2 0.06
6 3 0.09
7 2 0.06
8 20 0.57
9 8 0.23
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.73
Consensus pattern (8 bp):
ATTTTATT
Found at i:45913116 original size:30 final size:29
Alignment explanation
Indices: 45913050--45913104 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
45913040 TATTTTCATT
45913050 TTATTATTTCATTATTTTATTGTTTTTTA
1 TTATTATTTCATTATTTTATTGTTTTTTA
*
45913079 TTATTATTT-A-TATTATTTTTGTTTTT
1 TTATTATTTCATTATT-TTATTGTTTTT
45913105 ACTCTTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 4 0.17
28 11 0.46
29 9 0.38
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.75
Consensus pattern (29 bp):
TTATTATTTCATTATTTTATTGTTTTTTA
Found at i:45913253 original size:12 final size:12
Alignment explanation
Indices: 45913236--45913262 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
45913226 ATTCATTATC
45913236 ATTATTAATTTT
1 ATTATTAATTTT
45913248 ATTATTAATTTT
1 ATTATTAATTTT
45913260 ATT
1 ATT
45913263 TATATTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATTATTAATTTT
Found at i:45914941 original size:6 final size:6
Alignment explanation
Indices: 45914930--45914959 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
45914920 ACCAAACTGC
45914930 CCACGA CCACGA CCACGA CCACGA CCACGA
1 CCACGA CCACGA CCACGA CCACGA CCACGA
45914960 AATGAACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.50, G:0.17, T:0.00
Consensus pattern (6 bp):
CCACGA
Found at i:45916252 original size:4 final size:4
Alignment explanation
Indices: 45916243--45916276 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
45916233 AAGTTTTATT
45916243 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
45916277 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:45916284 original size:22 final size:22
Alignment explanation
Indices: 45916226--45916285 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
45916216 AAGTGGCCCA
*
45916226 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
45916250 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
45916271 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
45916286 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:45925710 original size:144 final size:144
Alignment explanation
Indices: 45925448--45925749 Score: 455
Period size: 144 Copynumber: 2.1 Consensus size: 144
45925438 CATGGAAGTT
* * *
45925448 GGGATTGAATCAGAAAGCCCATTAAAATGAAGCACAAGATTGCCCAAGTTAGTCAAGTTTCCTAT
1 GGGATAGAACCAGAAAGCCCATTAAAATGAAGCACAAGATTACCCAAGTTAGTCAAGTTTCCTAT
* *
45925513 GGAATCAGGGATGACACCAGTGAGATTATTGTCCGACAACTGCAAGTCGAAAAGAGATTTGAGCA
66 GGAATCAGGGATGACACCAGTGAGATTATTGTACGACAACTGAAAGTCGAAAAGAGATTTGAGCA
45925578 TCCCTACCTCACTG
131 TCCCTACCTCACTG
* *
45925592 GGGATAGAACCAGAAAGCCCATTAAAATTAAGCACAAGATTATCCAAGTTAGTCAAGTTTCCTAT
1 GGGATAGAACCAGAAAGCCCATTAAAATGAAGCACAAGATTACCCAAGTTAGTCAAGTTTCCTAT
* * *
45925657 GGAATGAGGGATGACACCAGTGAGATTATTGTACG-CTAACTGAAACG-CTAAAAGCGATTTGAG
66 GGAATCAGGGATGACACCAGTGAGATTATTGTACGAC-AACTGAAA-GTCGAAAAGAGATTTGAG
* * *
45925720 CATTCCTATCTCATTG
129 CATCCCTACCTCACTG
45925736 GGGATAGAACCAGA
1 GGGATAGAACCAGA
45925750 GAGATTATTA
Statistics
Matches: 143, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
143 1 0.01
144 141 0.99
145 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (144 bp):
GGGATAGAACCAGAAAGCCCATTAAAATGAAGCACAAGATTACCCAAGTTAGTCAAGTTTCCTAT
GGAATCAGGGATGACACCAGTGAGATTATTGTACGACAACTGAAAGTCGAAAAGAGATTTGAGCA
TCCCTACCTCACTG
Found at i:45928935 original size:24 final size:23
Alignment explanation
Indices: 45928908--45928956 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
45928898 TAGTATTTTG
* *
45928908 ATATCTAATATTTTTAAACAATTA
1 ATATATAATATTTGTAAA-AATTA
*
45928932 ATATATATTATTTGTAAAAATTA
1 ATATATAATATTTGTAAAAATTA
45928955 AT
1 AT
45928957 TTGAATATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (23 bp):
ATATATAATATTTGTAAAAATTA
Found at i:45931196 original size:23 final size:23
Alignment explanation
Indices: 45931169--45931215 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
45931159 TAACAAAAGT
45931169 ATACACATACATACAAATGCAAG
1 ATACACATACATACAAATGCAAG
45931192 ATACACATACATACAAATGCAAG
1 ATACACATACATACAAATGCAAG
45931215 A
1 A
45931216 ACGTAACCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.17
Consensus pattern (23 bp):
ATACACATACATACAAATGCAAG
Found at i:45931422 original size:21 final size:21
Alignment explanation
Indices: 45931350--45931422 Score: 58
Period size: 21 Copynumber: 3.5 Consensus size: 21
45931340 TGACAGGAGT
* *
45931350 ACACGCCCGTGT-GTCTGGGGG
1 ACACGCCCGTGTGGT-TGAGAG
* * * *
45931371 ACACACCCATGTGATTGAGAT
1 ACACGCCCGTGTGGTTGAGAG
* *
45931392 ACATGGCCGTGTGGTTGAGAG
1 ACACGCCCGTGTGGTTGAGAG
45931413 ACACGCCCGT
1 ACACGCCCGT
45931423 ATGACTGAGG
Statistics
Matches: 37, Mismatches: 14, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
21 36 0.97
22 1 0.03
ACGTcount: A:0.21, C:0.26, G:0.33, T:0.21
Consensus pattern (21 bp):
ACACGCCCGTGTGGTTGAGAG
Found at i:45936712 original size:43 final size:42
Alignment explanation
Indices: 45936603--45936769 Score: 187
Period size: 42 Copynumber: 4.0 Consensus size: 42
45936593 CGCTTACAAA
* *
45936603 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGAGCTTAGG
1 AAAAAACGCCGCTAAAGATAATGTTCTTTAGCGGCGCTTAGG
* *
45936645 AAAAAACGCCGCTACAGATCATGTTCTTTAGCGGCGCTTAGG
1 AAAAAACGCCGCTAAAGATAATGTTCTTTAGCGGCGCTTAGG
* *
45936687 AAGAAAACGCCGCTAAA-AGTAATGTTCTATAGCGACGCTT-GG
1 AA-AAAACGCCGCTAAAGA-TAATGTTCTTTAGCGGCGCTTAGG
* * * *
45936729 TCAAAAACGCCACTAATAG-TAGTGTTCTTTAGCAGCGCTTA
1 -AAAAAACGCCGCTAA-AGATAATGTTCTTTAGCGGCGCTTA
45936770 TTTCACAAAC
Statistics
Matches: 107, Mismatches: 12, Indels: 11
0.82 0.09 0.08
Matches are distributed among these distances:
42 74 0.69
43 33 0.31
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (42 bp):
AAAAAACGCCGCTAAAGATAATGTTCTTTAGCGGCGCTTAGG
Found at i:45936735 original size:85 final size:85
Alignment explanation
Indices: 45936605--45936769 Score: 196
Period size: 85 Copynumber: 1.9 Consensus size: 85
45936595 CTTACAAAAA
* * *
45936605 AAAACGCCGCTAAAGATCATGTTCTTTAGCGGAGCTTAGGAAAAAACGCCGCTACAGA-TCA-TG
1 AAAACGCCGCTAAAGATAATGTTCTATAGCGGAGCTTAGGAAAAAACGCCACTA-AGAGT-AGTG
*
45936668 TTCTTTAGCGGCGCTTAGGAAG
64 TTCTTTAGCAGCGCTTAGGAAG
* *
45936690 AAAACGCCGCTAAA-AGTAATGTTCTATAGC-GACGCTT-GGTCAAAAACGCCACTAATAGTAGT
1 AAAACGCCGCTAAAGA-TAATGTTCTATAGCGGA-GCTTAGG-AAAAAACGCCACTAAGAGTAGT
45936752 GTTCTTTAGCAGCGCTTA
63 GTTCTTTAGCAGCGCTTA
45936770 TTTCACAAAC
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
84 8 0.12
85 61 0.88
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (85 bp):
AAAACGCCGCTAAAGATAATGTTCTATAGCGGAGCTTAGGAAAAAACGCCACTAAGAGTAGTGTT
CTTTAGCAGCGCTTAGGAAG
Found at i:45937241 original size:21 final size:21
Alignment explanation
Indices: 45937217--45937265 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
45937207 GCTTCTATCG
*
45937217 CTGCTTCTCTCGCTGCGGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
45937238 CTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
45937259 CTGCTTC
1 CTGCTTC
45937266 CCTTGTTGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.02, C:0.41, G:0.20, T:0.37
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:45937279 original size:21 final size:21
Alignment explanation
Indices: 45937217--45937285 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 21
45937207 GCTTCTATCG
* **
45937217 CTGCTTCTCTCGCTGCGGCCT
1 CTGCTTCCCTCGCTGTAGCCT
*
45937238 CTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCCCTCGCTGTAGCCT
* * *
45937259 CTGCTTCCCTTGTTGTCGCCT
1 CTGCTTCCCTCGCTGTAGCCT
45937280 CTGCTT
1 CTGCTT
45937286 TAAGTTGTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.01, C:0.39, G:0.20, T:0.39
Consensus pattern (21 bp):
CTGCTTCCCTCGCTGTAGCCT
Found at i:45940256 original size:7 final size:7
Alignment explanation
Indices: 45940244--45940346 Score: 64
Period size: 7 Copynumber: 14.0 Consensus size: 7
45940234 TACCCTTGAC
45940244 ACCCTAA
1 ACCCTAA
45940251 ACCCTAA
1 ACCCTAA
45940258 ACCCCTAA
1 A-CCCTAA
*
45940266 CCCCTAA
1 ACCCTAA
*
45940273 ATCTCCTAG
1 A-C-CCTAA
*
45940282 CCCCTAA
1 ACCCTAA
*
45940289 ATTCCT-A
1 A-CCCTAA
*
45940296 GCCCTAA
1 ACCCTAA
*
45940303 CCCCTAA
1 ACCCTAA
45940310 ATCCCTAA
1 A-CCCTAA
*
45940318 CCCCTAA
1 ACCCTAA
*
45940325 CCCCTAA
1 ACCCTAA
*
45940332 CCCCTAA
1 ACCCTAA
45940339 ATCCCTAA
1 A-CCCTAA
45940347 CCCGAAGTGA
Statistics
Matches: 76, Mismatches: 13, Indels: 13
0.75 0.13 0.13
Matches are distributed among these distances:
6 3 0.04
7 46 0.61
8 23 0.30
9 4 0.05
ACGTcount: A:0.32, C:0.47, G:0.02, T:0.19
Consensus pattern (7 bp):
ACCCTAA
Found at i:45940273 original size:22 final size:22
Alignment explanation
Indices: 45940245--45940349 Score: 99
Period size: 22 Copynumber: 4.7 Consensus size: 22
45940235 ACCCTTGACA
45940245 CCCTAAACCCTAAACCCCT-AAC
1 CCCTAAACCCT-AACCCCTAAAC
* *
45940267 CCCTAAATCTCCTAGCCCCTAAAT
1 CCCTAAA-C-CCTAACCCCTAAAC
* * *
45940291 TCCT-AGCCCTAACCCCTAAAT
1 CCCTAAACCCTAACCCCTAAAC
*
45940312 CCCTAACCCCTAACCCCT-AAC
1 CCCTAAACCCTAACCCCTAAAC
45940333 CCCTAAATCCCTAACCC
1 CCCTAAA-CCCTAACCC
45940350 GAAGTGATAA
Statistics
Matches: 69, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
21 24 0.35
22 29 0.42
23 8 0.12
24 8 0.12
ACGTcount: A:0.30, C:0.49, G:0.02, T:0.19
Consensus pattern (22 bp):
CCCTAAACCCTAACCCCTAAAC
Found at i:45940347 original size:15 final size:15
Alignment explanation
Indices: 45940245--45940349 Score: 104
Period size: 15 Copynumber: 6.6 Consensus size: 15
45940235 ACCCTTGACA
* *
45940245 CCCTAAACCCTAAAC
1 CCCTAACCCCTAAAT
45940260 CCCTAACCCCTAAAT
1 CCCTAACCCCTAAAT
*
45940275 CTCCTAGCCCCTAAATTCCT
1 C-CCTAACCCCTAAA----T
45940295 AGCCCTAACCCCTAAAT
1 --CCCTAACCCCTAAAT
*
45940312 CCCTAACCCCT-AAC
1 CCCTAACCCCTAAAT
45940326 CCCTAACCCCTAAAT
1 CCCTAACCCCTAAAT
45940341 CCCTAACCC
1 CCCTAACCC
45940350 GAAGTGATAA
Statistics
Matches: 76, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
14 13 0.17
15 36 0.47
16 12 0.16
17 1 0.01
20 1 0.01
21 12 0.16
22 1 0.01
ACGTcount: A:0.30, C:0.49, G:0.02, T:0.19
Consensus pattern (15 bp):
CCCTAACCCCTAAAT
Found at i:45940774 original size:22 final size:22
Alignment explanation
Indices: 45940731--45940777 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
45940721 ATACTATCTG
45940731 TTTTACGATTATATAAAAAAAA
1 TTTTACGATTATATAAAAAAAA
* *
45940753 TTTTACTATATATAATATAAAAAA
1 TTTTACGAT-TAT-ATAAAAAAAA
45940777 T
1 T
45940778 AAGCAGTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 8 0.38
23 3 0.14
24 10 0.48
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (22 bp):
TTTTACGATTATATAAAAAAAA
Found at i:45941017 original size:41 final size:40
Alignment explanation
Indices: 45940972--45941184 Score: 142
Period size: 41 Copynumber: 5.2 Consensus size: 40
45940962 AATGTTTTTT
45940972 GCGGCGCTTCAACAAAAACGCCGCTAAAACCCCTAACATTA
1 GCGGCGCTT-AACAAAAACGCCGCTAAAACCCCTAACATTA
* * ** * *
45941013 GCGGCGCTTATCATAGACACGCCGCTAAAAGTCTTAACTTTA
1 GCGGCGCTTAACA-A-AAACGCCGCTAAAACCCCTAACATTA
* * ** * *
45941055 GCGTCGCTTATATAAAAACGCCGCTAAAAGACCAAATATTA
1 GCGGCGCTTA-ACAAAAACGCCGCTAAAACCCCTAACATTA
* * * *
45941096 GCGGCGCTTCAA-AGAAATCGCTGCTAAATA-CCTTAACTTTA
1 GCGGCGCTT-AACA-AAAACGCCGCTAAA-ACCCCTAACATTA
* * * * *
45941137 GCGGCGGTTGATCAAAAACGCCACTAAAACCCCCGACCATTA
1 GCGGCGCTT-AACAAAAACGCCGCTAAAA-CCCCTAACATTA
45941179 GCGGCG
1 GCGGCG
45941185 AAAGCCTAAA
Statistics
Matches: 130, Mismatches: 33, Indels: 17
0.72 0.18 0.09
Matches are distributed among these distances:
40 5 0.04
41 77 0.59
42 47 0.36
43 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.20
Consensus pattern (40 bp):
GCGGCGCTTAACAAAAACGCCGCTAAAACCCCTAACATTA
Found at i:45941164 original size:82 final size:83
Alignment explanation
Indices: 45940972--45941184 Score: 211
Period size: 83 Copynumber: 2.6 Consensus size: 83
45940962 AATGTTTTTT
* * * *
45940972 GCGGCGCTTCA-ACAAAAACGCCGCTAAAACCCCTAACATTAGCGGCGCTTATCATAGACACGCC
1 GCGGCGCTT-ATACAAAAACGCCGCTAAAACACCAAACATTAGCGGCGCTTATCAAAGAAACGCC
*
45941036 GCTAAAAGTCTTAACTTTA
65 GCTAAAAGCCTTAACTTTA
* * * * *
45941055 GCGTCGCTTATATAAAAACGCCGCTAAAAGACCAAATATTAGCGGCGC-T-TCAAAGAAATCGCT
1 GCGGCGCTTATACAAAAACGCCGCTAAAACACCAAACATTAGCGGCGCTTATCAAAGAAA-CGCC
45941118 GCTAAATA-CCTTAACTTTA
65 GCTAAA-AGCCTTAACTTTA
* * * * *
45941137 GCGGCGGTTGAT-CAAAAACGCCACTAAAACCCCCGACCATTAGCGGCG
1 GCGGCGCTT-ATACAAAAACGCCGCTAAAA-CACCAAACATTAGCGGCG
45941185 AAAGCCTAAA
Statistics
Matches: 106, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
81 7 0.07
82 43 0.41
83 56 0.53
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.20
Consensus pattern (83 bp):
GCGGCGCTTATACAAAAACGCCGCTAAAACACCAAACATTAGCGGCGCTTATCAAAGAAACGCCG
CTAAAAGCCTTAACTTTA
Found at i:45946800 original size:156 final size:159
Alignment explanation
Indices: 45946497--45946801 Score: 404
Period size: 156 Copynumber: 1.9 Consensus size: 159
45946487 TCCTTTCTTG
* *
45946497 GCTTCTAGTTCTTGTACTCGTACTAGACTAAGACAAAAAAATCAAAACCCCAAATTAGATTTAAA
1 GCTTCTAGTTCTTGTACTCATACTAGACTAAGACAAAAAAATCAAAACCCCAAATTAGACTTAAA
* ** * * * * *
45946562 TATTTTGAAATTTGATAGTAAAAAAGTGTTTACGATAAAACTGCGATCTAGTTGTGTTAGGTTGA
66 AATTTCAAAAATTGACAATAAAAAAGTGTTTACGATAAAACCGCGATCTAGCTGTGTTAGGTTGA
* *
45946627 ATGCATTGTCTTCTGTTGTTCTTTTTTTA
131 AGGCATTGTCTTATGTTGTTCTTTTTTTA
*
45946656 GCTTCTAGTTCTTGTACTCATACTAGACT-A-A-AAAAAAATCATAACCCCAAATTAGACTTAAA
1 GCTTCTAGTTCTTGTACTCATACTAGACTAAGACAAAAAAATCAAAACCCCAAATTAGACTTAAA
* * * *
45946718 AATTTCAAAAATTGACAATAAAAAGGTGTTTACGATATACCCGTGAT-TCAGCTGTGTTAGGTTG
66 AATTTCAAAAATTGACAATAAAAAAGTGTTTACGATAAAACCGCGATCT-AGCTGTGTTAGGTTG
45946782 AAGGCA-TGATCTTATGTTGT
130 AAGGCATTG-TCTTATGTTGT
45946802 GACCCTCACC
Statistics
Matches: 127, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
155 3 0.02
156 94 0.74
157 1 0.01
158 1 0.01
159 28 0.22
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.35
Consensus pattern (159 bp):
GCTTCTAGTTCTTGTACTCATACTAGACTAAGACAAAAAAATCAAAACCCCAAATTAGACTTAAA
AATTTCAAAAATTGACAATAAAAAAGTGTTTACGATAAAACCGCGATCTAGCTGTGTTAGGTTGA
AGGCATTGTCTTATGTTGTTCTTTTTTTA
Found at i:45947433 original size:16 final size:16
Alignment explanation
Indices: 45947412--45947445 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
45947402 CTAGAGTTAA
45947412 ATGCTTCACAGAGGTT
1 ATGCTTCACAGAGGTT
45947428 ATGCTTCACAGAGGTT
1 ATGCTTCACAGAGGTT
45947444 AT
1 AT
45947446 TGTCAACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (16 bp):
ATGCTTCACAGAGGTT
Found at i:45949122 original size:33 final size:32
Alignment explanation
Indices: 45949085--45949196 Score: 84
Period size: 33 Copynumber: 3.4 Consensus size: 32
45949075 TAACCTCAAT
45949085 ACCCTCCTCACCTAAACCTTTAACACCCTCACC
1 ACCCTCC-CACCTAAACCTTTAACACCCTCACC
* ** * *
45949118 ACCCTCACCACTTTTA--TTTCCAACAACCTCAAC
1 ACCCTC-CCACCTAAACCTTT--AACACCCTCACC
* * *
45949151 ATCCTCCCCACCTAAACCTTCAACACCTTCACC
1 ACCCT-CCCACCTAAACCTTTAACACCCTCACC
45949184 ACCCTCACCACCT
1 ACCCTC-CCACCT
45949197 TTACTGCCAG
Statistics
Matches: 58, Mismatches: 14, Indels: 14
0.67 0.16 0.16
Matches are distributed among these distances:
31 3 0.05
32 1 0.02
33 50 0.86
34 2 0.03
35 2 0.03
ACGTcount: A:0.28, C:0.50, G:0.00, T:0.22
Consensus pattern (32 bp):
ACCCTCCCACCTAAACCTTTAACACCCTCACC
Found at i:45949148 original size:66 final size:66
Alignment explanation
Indices: 45949058--45949219 Score: 207
Period size: 66 Copynumber: 2.5 Consensus size: 66
45949048 CATTACTCTT
* * ** * * *
45949058 ACCACATTGACTGCCAGTAACCTCAATACCCTCCTCACCTAAACCTTTAACACCCTCACCACCCT
1 ACCACCTTTACTGCCAACAACCTCAACACCCTCCCCACCTAAACCTTCAACACCCTCACCACCCT
45949123 C
66 C
* * * * *
45949124 ACCACTTTTATTTCCAACAACCTCAACATCCTCCCCACCTAAACCTTCAACACCTTCACCACCCT
1 ACCACCTTTACTGCCAACAACCTCAACACCCTCCCCACCTAAACCTTCAACACCCTCACCACCCT
45949189 C
66 C
*
45949190 ACCACCTTTACTGCCAGCAACCTCAACACC
1 ACCACCTTTACTGCCAACAACCTCAACACC
45949220 TTCATTACCA
Statistics
Matches: 80, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
66 80 1.00
ACGTcount: A:0.29, C:0.46, G:0.03, T:0.22
Consensus pattern (66 bp):
ACCACCTTTACTGCCAACAACCTCAACACCCTCCCCACCTAAACCTTCAACACCCTCACCACCCT
C
Found at i:45949185 original size:24 final size:23
Alignment explanation
Indices: 45949142--45949186 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
45949132 TATTTCCAAC
*
45949142 AACCTCAACATCCTCCCCACCTA
1 AACCTCAACATCCTCACCACCTA
45949165 AACCTTCAACA-CCTTCACCACC
1 AACC-TCAACATCC-TCACCACC
45949187 CTCACCACCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.31, C:0.51, G:0.00, T:0.18
Consensus pattern (23 bp):
AACCTCAACATCCTCACCACCTA
Found at i:45950156 original size:28 final size:29
Alignment explanation
Indices: 45950102--45950222 Score: 129
Period size: 29 Copynumber: 4.2 Consensus size: 29
45950092 TAAAAAATAA
45950102 TAAACAAAAA-CCTCCAAAATCAAAAACCC
1 TAAACAAAAATCC-CCAAAATCAAAAACCC
* *
45950131 TAAGCAAAAATCCCCAAAATCAAAACCCC
1 TAAACAAAAATCCCCAAAATCAAAAACCC
* * * * *
45950160 TAACCCAAAATCCCCAAATTCGACAA-CC
1 TAAACAAAAATCCCCAAAATCAAAAACCC
* * *
45950188 TAAACTAAAATCCCCAAACTTAAAAACCC
1 TAAACAAAAATCCCCAAAATCAAAAACCC
45950217 TAAACA
1 TAAACA
45950223 TACACCGAAA
Statistics
Matches: 75, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
28 22 0.29
29 51 0.68
30 2 0.03
ACGTcount: A:0.52, C:0.33, G:0.02, T:0.13
Consensus pattern (29 bp):
TAAACAAAAATCCCCAAAATCAAAAACCC
Found at i:45952148 original size:26 final size:26
Alignment explanation
Indices: 45952105--45952161 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
45952095 TTTTTTAATT
* *
45952105 TTAATTTTAATTTCAACTATTAAGTA
1 TTAATTTTAAATTCAACTATTAAGCA
*
45952131 TTAATTTTAAAATT-AACTTTTAAGCA
1 TTAATTTT-AAATTCAACTATTAAGCA
45952157 TTAAT
1 TTAAT
45952162 AATTCCTTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.40, C:0.07, G:0.04, T:0.49
Consensus pattern (26 bp):
TTAATTTTAAATTCAACTATTAAGCA
Found at i:45956411 original size:143 final size:143
Alignment explanation
Indices: 45956153--45956584 Score: 792
Period size: 143 Copynumber: 3.0 Consensus size: 143
45956143 ACTTGGAACT
* * * *
45956153 AAGGAAATGTGCAGGTGTACAAAATCGTATCAAGTAATAAAGTGACAACTAATGTCGAGCTATCG
1 AAGGAAATGTGCAAGTGTACAAAATCGTACCAAGTAATAAAGTGACAAGTAATGTCGAGTTATCG
* *
45956218 TATCCATAGGGACTGTGAAAGAGAATATTTATGAAATGCAAATTTAAACAATTTGGTGATGGAAA
66 TATCCATAGGTACTATGAAAGAGAATATTTATGAAATGCAAATTTAAACAATTTGGTGATGGAAA
45956283 ATATGTTGATTTG
131 ATATGTTGATTTG
45956296 AAGGAAATGTGCAAGTGTACAAAATCGTACCAAGTAATAAAGTGACAAGTAATGTCGAGTTATCG
1 AAGGAAATGTGCAAGTGTACAAAATCGTACCAAGTAATAAAGTGACAAGTAATGTCGAGTTATCG
45956361 TATCCATAGGTACTATGAAAGAGAATATTTATGAAATGCAAATTTAAACAATTTGGTGATGGAAA
66 TATCCATAGGTACTATGAAAGAGAATATTTATGAAATGCAAATTTAAACAATTTGGTGATGGAAA
45956426 ATATGTTGATTTG
131 ATATGTTGATTTG
*
45956439 AAGGAAATGTGCAAGTGTACAAAATCGTACCAAGTAATAAAGTGACAAGTAATGTCAAGTTATCG
1 AAGGAAATGTGCAAGTGTACAAAATCGTACCAAGTAATAAAGTGACAAGTAATGTCGAGTTATCG
*
45956504 TATCCATAGGTACTATGAAAGAGAATATTTATGAAATGCAAATTTAAACAATTTGGTGATGAAAA
66 TATCCATAGGTACTATGAAAGAGAATATTTATGAAATGCAAATTTAAACAATTTGGTGATGGAAA
45956569 ATATGTTGATTTG
131 ATATGTTGATTTG
45956582 AAG
1 AAG
45956585 TGGTGATATA
Statistics
Matches: 281, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
143 281 1.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (143 bp):
AAGGAAATGTGCAAGTGTACAAAATCGTACCAAGTAATAAAGTGACAAGTAATGTCGAGTTATCG
TATCCATAGGTACTATGAAAGAGAATATTTATGAAATGCAAATTTAAACAATTTGGTGATGGAAA
ATATGTTGATTTG
Found at i:45961610 original size:51 final size:51
Alignment explanation
Indices: 45961539--45961635 Score: 185
Period size: 51 Copynumber: 1.9 Consensus size: 51
45961529 ACATGCCAAA
*
45961539 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTCGGTGGCCAT
1 GCCATGTCCCAGACATGGTCTTACACGGGATGTTCTCATGTCGGTGGCCAT
45961590 GCCATGTCCCAGACATGGTCTTACACGGGATGTTCTCATGTCGGTG
1 GCCATGTCCCAGACATGGTCTTACACGGGATGTTCTCATGTCGGTG
45961636 CTGGCTAATT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.18, C:0.26, G:0.28, T:0.29
Consensus pattern (51 bp):
GCCATGTCCCAGACATGGTCTTACACGGGATGTTCTCATGTCGGTGGCCAT
Found at i:45962645 original size:13 final size:13
Alignment explanation
Indices: 45962624--45962653 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
45962614 GCTTGGATCA
45962624 TCATCAAATAAAT
1 TCATCAAATAAAT
*
45962637 TCATGAAATAAAT
1 TCATCAAATAAAT
45962650 TCAT
1 TCAT
45962654 AGTTGCTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.33
Consensus pattern (13 bp):
TCATCAAATAAAT
Found at i:45962901 original size:30 final size:30
Alignment explanation
Indices: 45962866--45962923 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
45962856 CCTCGACTCT
*
45962866 AACTTTTTCAAAATTACGA-TTTTGCCCCTA
1 AACTTTTGCAAAATTAC-ATTTTTGCCCCTA
*
45962896 AACTTTTGCATAATTACATTTTTGCCCC
1 AACTTTTGCAAAATTACATTTTTGCCCC
45962924 AAGGCCCGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (30 bp):
AACTTTTGCAAAATTACATTTTTGCCCCTA
Found at i:45976295 original size:20 final size:20
Alignment explanation
Indices: 45976270--45976329 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
45976260 ATTTTAAAAT
45976270 CAAGTTAAAATGATTTTAAC
1 CAAGTTAAAATGATTTTAAC
45976290 CAAGTTAAAATGATTTTAAC
1 CAAGTTAAAATGATTTTAAC
*
45976310 CAAGTTAAAATCATTTTAAC
1 CAAGTTAAAATGATTTTAAC
45976330 ACATCAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.45, C:0.12, G:0.08, T:0.35
Consensus pattern (20 bp):
CAAGTTAAAATGATTTTAAC
Found at i:45976354 original size:40 final size:40
Alignment explanation
Indices: 45976260--45976354 Score: 104
Period size: 40 Copynumber: 2.3 Consensus size: 40
45976250 TTTTGAAACA
* * *
45976260 ATTTTAAAATCAAGTTAAAATGATTTTAACCAAGTTAAAATG
1 ATTTT-AAA-CAAGTTAAAATCATTTTAACCAAGTCAAAATC
*
45976302 ATTTTAACCAAGTTAAAATCATTTTAA-CACA-TCAAAATC
1 ATTTTAAACAAGTTAAAATCATTTTAACCA-AGTCAAAATC
45976341 ATTTTCAAACAAGT
1 ATTTT-AAACAAGT
45976355 CATAATTGTT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
39 13 0.28
40 26 0.57
41 2 0.04
42 5 0.11
ACGTcount: A:0.46, C:0.13, G:0.06, T:0.35
Consensus pattern (40 bp):
ATTTTAAACAAGTTAAAATCATTTTAACCAAGTCAAAATC
Found at i:45983701 original size:6 final size:6
Alignment explanation
Indices: 45983690--45983719 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
45983680 TGGAAGACCA
45983690 TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT
1 TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT
45983720 GTAGATGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.50
Consensus pattern (6 bp):
TCTGAT
Found at i:45988146 original size:18 final size:18
Alignment explanation
Indices: 45988123--45988160 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
45988113 TTCAATTAAG
*
45988123 TCTTTCATT-AAGTGTTTT
1 TCTTTC-TTAAAGTATTTT
45988141 TCTTTCTTAAAGTATTTT
1 TCTTTCTTAAAGTATTTT
45988159 TC
1 TC
45988161 ATCTAGTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.18, C:0.13, G:0.08, T:0.61
Consensus pattern (18 bp):
TCTTTCTTAAAGTATTTT
Found at i:45988241 original size:25 final size:24
Alignment explanation
Indices: 45988203--45988259 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 24
45988193 AGTTTTGCAG
* *
45988203 CAAGTTTTT-TTAAAGTTTTTCAT
1 CAAGTTTTTCATAAAATTTTTCAT
*
45988226 TAAGTCTTTTCATAAAATTTTTCAT
1 CAAGT-TTTTCATAAAATTTTTCAT
45988251 CAAGTTTTT
1 CAAGTTTTT
45988260 AATCATTTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
23 4 0.14
24 8 0.29
25 16 0.57
ACGTcount: A:0.28, C:0.11, G:0.07, T:0.54
Consensus pattern (24 bp):
CAAGTTTTTCATAAAATTTTTCAT
Found at i:45988264 original size:12 final size:12
Alignment explanation
Indices: 45988155--45988264 Score: 69
Period size: 12 Copynumber: 8.8 Consensus size: 12
45988145 TCTTAAAGTA
*
45988155 TTTTTCATCTAG
1 TTTTTCATCAAG
*
45988167 TTCTTTTATCAAG
1 TT-TTTCATCAAG
*
45988180 TTTTTAATTACCAAG
1 TTTTTCA-T--CAAG
* *
45988195 TTTTGCAGCAAG
1 TTTTTCATCAAG
* *
45988207 TTTTT-TTAAAG
1 TTTTTCATCAAG
*
45988218 TTTTTCATTAAG
1 TTTTTCATCAAG
* *
45988230 TCTTTTCATAAAA
1 T-TTTTCATCAAG
45988243 TTTTTCATCAAG
1 TTTTTCATCAAG
*
45988255 TTTTTAATCA
1 TTTTTCATCA
45988265 TTTCGTTTTT
Statistics
Matches: 75, Mismatches: 17, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
11 8 0.11
12 37 0.49
13 21 0.28
15 9 0.12
ACGTcount: A:0.27, C:0.13, G:0.08, T:0.52
Consensus pattern (12 bp):
TTTTTCATCAAG
Found at i:45989995 original size:13 final size:13
Alignment explanation
Indices: 45989977--45990001 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45989967 TAATATATTT
45989977 ATTAATTAAAAAC
1 ATTAATTAAAAAC
45989990 ATTAATTAAAAA
1 ATTAATTAAAAA
45990002 AATGTTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAC
Found at i:45990603 original size:18 final size:19
Alignment explanation
Indices: 45990580--45990615 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
45990570 TAAAAGATTA
*
45990580 TTTATATA-ATTTTTAGAG
1 TTTATATATATATTTAGAG
45990598 TTTATATATATATTTAGA
1 TTTATATATATATTTAGA
45990616 TTATTTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (19 bp):
TTTATATATATATTTAGAG
Found at i:45990624 original size:19 final size:19
Alignment explanation
Indices: 45990574--45990667 Score: 79
Period size: 19 Copynumber: 5.0 Consensus size: 19
45990564 TGGATTTAAA
*
45990574 AGATTATTTATATAATTTTT
1 AGATTATTTATAT-ATATTT
*
45990594 AGAGTT-TATATATATATTT
1 AGA-TTATTTATATATATTT
*
45990613 AGATTATTTATATACTTTTT
1 AGATTATTTATATA-TATTT
* * *
45990633 CG-TTATTTTTACATATTT
1 AGATTATTTATATATATTT
45990651 A-ATTATTT-TATATATTT
1 AGATTATTTATATATATTT
45990668 TAATTTTTTT
Statistics
Matches: 60, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
17 8 0.13
18 12 0.20
19 24 0.40
20 14 0.23
21 2 0.03
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (19 bp):
AGATTATTTATATATATTT
Found at i:45990658 original size:18 final size:19
Alignment explanation
Indices: 45990635--45990678 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
45990625 TACTTTTTCG
45990635 TTATTTTTACATA-TTTAA
1 TTATTTTTACATATTTTAA
*
45990653 TTA-TTTTATATATTTTAA
1 TTATTTTTACATATTTTAA
45990671 TT-TTTTTA
1 TTATTTTTA
45990679 ATTTTCTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATTTTTACATATTTTAA
Found at i:45994318 original size:6 final size:6
Alignment explanation
Indices: 45994307--45994372 Score: 105
Period size: 6 Copynumber: 11.0 Consensus size: 6
45994297 TGGATGAACA
*
45994307 TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTAAT
1 TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT
* *
45994355 GCTGAT TCTGGT TCTGAT
1 TCTGAT TCTGAT TCTGAT
45994373 GTAGATGTTA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 54 1.00
ACGTcount: A:0.17, C:0.17, G:0.18, T:0.48
Consensus pattern (6 bp):
TCTGAT
Found at i:46001513 original size:16 final size:16
Alignment explanation
Indices: 46001492--46001531 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
46001482 CCTACTCCCT
46001492 CCCAATTTAAACCCAG
1 CCCAATTTAAACCCAG
*
46001508 CCCAATTTAAATCCAG
1 CCCAATTTAAACCCAG
46001524 CCCAATTT
1 CCCAATTT
46001532 TCTCTTAGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.35, C:0.35, G:0.05, T:0.25
Consensus pattern (16 bp):
CCCAATTTAAACCCAG
Found at i:46002265 original size:9 final size:9
Alignment explanation
Indices: 46002251--46002341 Score: 83
Period size: 9 Copynumber: 9.7 Consensus size: 9
46002241 CCTAATTTTT
46002251 TAATTTGGG
1 TAATTTGGG
**
46002260 TAATTTGAA
1 TAATTTGGG
46002269 TAATTTTCGGG
1 TAA-TTT-GGG
46002280 TAATTTGGG
1 TAATTTGGG
46002289 TAATTTTCGGG
1 TAA-TTT-GGG
*
46002300 TAATTCGGG
1 TAATTTGGG
*
46002309 TAATTCGGG
1 TAATTTGGG
* *
46002318 TAAGTCGGG
1 TAATTTGGG
*
46002327 TAATTCGGG
1 TAATTTGGG
46002336 TAATTT
1 TAATTT
46002342 TTAACTAAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
9 49 0.70
10 11 0.16
11 10 0.14
ACGTcount: A:0.24, C:0.07, G:0.29, T:0.41
Consensus pattern (9 bp):
TAATTTGGG
Found at i:46002282 original size:20 final size:20
Alignment explanation
Indices: 46002257--46002304 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
46002247 TTTTTAATTT
46002257 GGGTAATTTGAATAATTTTC
1 GGGTAATTTGAATAATTTTC
**
46002277 GGGTAATTTGGGTAATTTTC
1 GGGTAATTTGAATAATTTTC
46002297 GGGTAATT
1 GGGTAATT
46002305 CGGGTAATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.25, C:0.04, G:0.27, T:0.44
Consensus pattern (20 bp):
GGGTAATTTGAATAATTTTC
Found at i:46002317 original size:18 final size:18
Alignment explanation
Indices: 46002274--46002340 Score: 98
Period size: 18 Copynumber: 3.6 Consensus size: 18
46002264 TTGAATAATT
*
46002274 TTCGGGTAATTTGGGTAA
1 TTCGGGTAATTCGGGTAA
46002292 TTTTCGGGTAATTCGGGTAA
1 --TTCGGGTAATTCGGGTAA
*
46002312 TTCGGGTAAGTCGGGTAA
1 TTCGGGTAATTCGGGTAA
46002330 TTCGGGTAATT
1 TTCGGGTAATT
46002341 TTTAACTAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
18 27 0.61
20 17 0.39
ACGTcount: A:0.21, C:0.09, G:0.33, T:0.37
Consensus pattern (18 bp):
TTCGGGTAATTCGGGTAA
Found at i:46002333 original size:27 final size:28
Alignment explanation
Indices: 46002274--46002340 Score: 100
Period size: 27 Copynumber: 2.4 Consensus size: 28
46002264 TTGAATAATT
* *
46002274 TTCGGGTAATTTGGGTAATTTTCGGGTAA
1 TTCGGGTAATTCGGGTAA-TGTCGGGTAA
46002303 TTCGGGTAATTCGGGTAA-GTCGGGTAA
1 TTCGGGTAATTCGGGTAATGTCGGGTAA
46002330 TTCGGGTAATT
1 TTCGGGTAATT
46002341 TTTAACTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 19 0.53
29 17 0.47
ACGTcount: A:0.21, C:0.09, G:0.33, T:0.37
Consensus pattern (28 bp):
TTCGGGTAATTCGGGTAATGTCGGGTAA
Found at i:46002704 original size:24 final size:24
Alignment explanation
Indices: 46002677--46002740 Score: 60
Period size: 26 Copynumber: 2.6 Consensus size: 24
46002667 AATAAAACTT
46002677 ATTAAAAATAT-AAGAA-ATATATAA
1 ATTAAAAAT-TCAA-AATATATATAA
46002701 ATTATAAAACTTCAAAATATATATAA
1 ATTA-AAAA-TTCAAAATATATATAA
* *
46002727 ATTGAAAATGCAAA
1 ATTAAAAATTCAAA
46002741 TAAAAAAGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
24 9 0.26
25 11 0.32
26 14 0.41
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.30
Consensus pattern (24 bp):
ATTAAAAATTCAAAATATATATAA
Found at i:46004280 original size:19 final size:17
Alignment explanation
Indices: 46004248--46004282 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
46004238 ATCGTTCTTG
46004248 ATTTTCTTTTTCTAATT
1 ATTTTCTTTTTCTAATT
46004265 ATTTTCATTATTTCTAAT
1 ATTTTC-TT-TTTCTAAT
46004283 CTGTATTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 2 0.12
19 8 0.50
ACGTcount: A:0.23, C:0.11, G:0.00, T:0.66
Consensus pattern (17 bp):
ATTTTCTTTTTCTAATT
Found at i:46006143 original size:18 final size:18
Alignment explanation
Indices: 46006117--46006169 Score: 63
Period size: 17 Copynumber: 2.8 Consensus size: 18
46006107 AAAATTCAGA
46006117 AAAATATAAAAATTATTTT
1 AAAA-ATAAAAATTATTTT
*
46006136 AAAAAT-AAAATTAATTT
1 AAAAATAAAAATTATTTT
46006153 AAAAATTATAAAATTAT
1 AAAAA-TA-AAAATTAT
46006170 AAAAAATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
17 15 0.52
18 3 0.10
19 4 0.14
20 7 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAAATAAAAATTATTTT
Found at i:46010675 original size:43 final size:43
Alignment explanation
Indices: 46010613--46010908 Score: 301
Period size: 43 Copynumber: 6.9 Consensus size: 43
46010603 TTTTTCACAT
* * * *
46010613 AAACACCGCTGAAGGTCATGACCTTAAGCGGCGCTTTTATCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCAC
* * *
46010656 AAACGCCGCTATAGATCATGACCTTTAGTGGCGCTTTTGT-ATC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCA-C
* * **
46010699 AAACGCCACTAAAGGTCATGTTCTTTAGCGGCGCTTTTATCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCAC
*
46010742 AAACGCCGCTATAGATCATGACCTTTAGCGGCGCTTTTAT-AGC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCA-C
* * * *** * *
46010785 AATCGCCGCTAAAGGTAATGTTGTTTAGCGGCGCTTTCATTAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCAC
* * ** **
46010828 AAACGCCACTAAAGAACATGACCTTTAGCAACGCTTTTATCGT
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCAC
* *
46010871 AAACGCTGCTAAAGAACATGACCTTTAGCGGCG-TTTTA
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTA
46010909 CTAAAAACGC
Statistics
Matches: 204, Mismatches: 45, Indels: 9
0.79 0.17 0.03
Matches are distributed among these distances:
42 7 0.03
43 195 0.96
44 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTATCAC
Found at i:46010729 original size:86 final size:86
Alignment explanation
Indices: 46010624--46010908 Score: 338
Period size: 86 Copynumber: 3.3 Consensus size: 86
46010614 AACACCGCTG
** * *
46010624 AAGGTCATGACCTTAAGCGGCGCTTTTATCACAAACGCCGCTATAGATCATGACCTTTAGTGGCG
1 AAGGTCATGTTCTTTAGCGGCGCTTTTATCACAAACGCCGCTATAGATCATGACCTTTAGCGGCG
* *
46010689 CTTTTGTATCAAACGCCACTA
66 CTTTTATAGCAAACGCCACTA
46010710 AAGGTCATGTTCTTTAGCGGCGCTTTTATCACAAACGCCGCTATAGATCATGACCTTTAGCGGCG
1 AAGGTCATGTTCTTTAGCGGCGCTTTTATCACAAACGCCGCTATAGATCATGACCTTTAGCGGCG
* *
46010775 CTTTTATAGCAATCGCCGCTA
66 CTTTTATAGCAAACGCCACTA
* * * * * * * **
46010796 AAGGTAATGTTGTTTAGCGGCGCTTTCATTACAAACGCCACTAAAGAACATGACCTTTAGCAACG
1 AAGGTCATGTTCTTTAGCGGCGCTTTTATCACAAACGCCGCTATAGATCATGACCTTTAGCGGCG
* * **
46010861 CTTTTATCGTAAACGCTGCTA
66 CTTTTATAGCAAACGCCACTA
** **
46010882 AAGAACATGACCTTTAGCGGCG-TTTTA
1 AAGGTCATGTTCTTTAGCGGCGCTTTTA
46010909 CTAAAAACGC
Statistics
Matches: 171, Mismatches: 28, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
85 4 0.02
86 167 0.98
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (86 bp):
AAGGTCATGTTCTTTAGCGGCGCTTTTATCACAAACGCCGCTATAGATCATGACCTTTAGCGGCG
CTTTTATAGCAAACGCCACTA
Found at i:46011226 original size:21 final size:21
Alignment explanation
Indices: 46011201--46011257 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
46011191 GTCGTATTTT
*
46011201 CTGCTGCCTTTGCTTCCCTCG
1 CTGCTGCCTCTGCTTCCCTCG
* *
46011222 TTGCTACCTCTGCTTCCCTCG
1 CTGCTGCCTCTGCTTCCCTCG
46011243 CTGCTGCCTCTGCTT
1 CTGCTGCCTCTGCTT
46011258 TAAGTTGTAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.02, C:0.42, G:0.18, T:0.39
Consensus pattern (21 bp):
CTGCTGCCTCTGCTTCCCTCG
Found at i:46016770 original size:9 final size:9
Alignment explanation
Indices: 46016756--46017165 Score: 124
Period size: 9 Copynumber: 43.9 Consensus size: 9
46016746 TAAGTATAAT
46016756 TAAGTTATG
1 TAAGTTATG
46016765 TAAGTTATG
1 TAAGTTATG
* *
46016774 ATATGATATATA
1 -TAAG-T-TATG
46016786 TAAGTTAT-
1 TAAGTTATG
*
46016794 TAAGCTATG
1 TAAGTTATG
46016803 TAAGTTATG
1 TAAGTTATG
*
46016812 TGAGTTATG
1 TAAGTTATG
* *
46016821 ATATGATATATA
1 -TAAG-T-TATG
*
46016833 TAATTTAT-
1 TAAGTTATG
46016841 TAAGTTATG
1 TAAGTTATG
*
46016850 TATG-TATG
1 TAAGTTATG
*
46016858 TGAGTTATG
1 TAAGTTATG
46016867 TAAGTTATG
1 TAAGTTATG
* * *
46016876 ATATGATATA
1 -TAAGTTATG
*
46016886 T-ATTTATG
1 TAAGTTATG
46016894 T-A-TTATG
1 TAAGTTATG
46016901 TAAGTTATGTG
1 TAAGTTA--TG
** *
46016912 TTTGTTTTG
1 TAAGTTATG
46016921 TAAGTTATAG
1 TAAGTTAT-G
* *
46016931 TATGATATATA
1 TAAG-T-TATG
46016942 TAAGTTAT-
1 TAAGTTATG
46016950 TAAGTTATG
1 TAAGTTATG
*
46016959 TATG-TATG
1 TAAGTTATG
*
46016967 TGAGTTATG
1 TAAGTTATG
46016976 TAAGTTATG
1 TAAGTTATG
* *
46016985 ATCTAATATATATA
1 ---TAA-GT-TATG
46016999 TAAGTTAT-
1 TAAGTTATG
*
46017007 TAAGTTAAG
1 TAAGTTATG
* *
46017016 ATCCAAAGTTTTTTT
1 -T---AAG--TTATG
* *
46017031 TAA-TTCTT
1 TAAGTTATG
46017039 TAAAGTTATG
1 T-AAGTTATG
*
46017049 TAAATTATG
1 TAAGTTATG
46017058 TAAGTTATG
1 TAAGTTATG
*
46017067 ATATGGTTAT-
1 -TA-AGTTATG
46017077 TAAGTTATG
1 TAAGTTATG
*
46017086 CAAGTTATG
1 TAAGTTATG
*
46017095 TGAGTTATG
1 TAAGTTATG
* *
46017104 TAAATTATA
1 TAAGTTATG
*
46017113 TAAATTATG
1 TAAGTTATG
* *
46017122 TAAATTTTG
1 TAAGTTATG
* * *
46017131 ATATGATATA
1 -TAAGTTATG
*
46017141 T-ATTTATG
1 TAAGTTATG
46017149 TAAGTTATG
1 TAAGTTATG
*
46017158 TAAATTAT
1 TAAGTTAT
46017166 ATATTCATTT
Statistics
Matches: 294, Mismatches: 69, Indels: 76
0.67 0.16 0.17
Matches are distributed among these distances:
7 6 0.02
8 61 0.21
9 148 0.50
10 30 0.10
11 27 0.09
12 12 0.04
13 4 0.01
14 4 0.01
15 2 0.01
ACGTcount: A:0.35, C:0.01, G:0.17, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:46016809 original size:47 final size:47
Alignment explanation
Indices: 46016756--46016975 Score: 201
Period size: 47 Copynumber: 4.4 Consensus size: 47
46016746 TAAGTATAAT
*
46016756 TAAGTTATGTAAGTTATGATATGATATATATAAGTTATTAAGCTATG
1 TAAGTTATGTAAGTTATGATATGATATATATAAGTTATTAAGTTATG
* *
46016803 TAAGTTATGTGAGTTATGATATGATATATATAATTTATTAAGTTATGTATG
1 TAAGTTATGTAAGTTATGATATGATATATATAAGTTATTAAG---T-TATG
*
46016854 TATGTGAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTG
1 TA----AGTTATGTAAGTTATGATATGATATATA--TAAG--TTAT-TAAGTTA--TG
** *
46016912 TTTGTTTTGTAAGTTAT-AGTATGATATATATAAGTTATTAAGTTATG
1 TAAGTTATGTAAGTTATGA-TATGATATATATAAGTTATTAAGTTATG
* *
46016959 TATG-TATGTGAGTTATG
1 TAAGTTATGTAAGTTATG
46016976 TAAGTTATGA
Statistics
Matches: 143, Mismatches: 13, Indels: 34
0.75 0.07 0.18
Matches are distributed among these distances:
46 10 0.07
47 45 0.31
49 7 0.05
50 4 0.03
51 6 0.04
52 3 0.02
53 1 0.01
54 24 0.17
55 27 0.19
56 2 0.01
57 3 0.02
58 3 0.02
59 4 0.03
60 4 0.03
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.47
Consensus pattern (47 bp):
TAAGTTATGTAAGTTATGATATGATATATATAAGTTATTAAGTTATG
Found at i:46016848 original size:55 final size:56
Alignment explanation
Indices: 46016786--46017013 Score: 251
Period size: 55 Copynumber: 4.1 Consensus size: 56
46016776 ATGATATATA
* * *
46016786 TAAGTTAT-TAAGCTATGTAAGTTATGTGAGTTATGA-TATGATATATATAATTTAT
1 TAAGTTATGTAAG-TATGTGAGTTATGTAAGTTATGACTATGATATATATAAGTTAT
*
46016841 TAAGTTATGTATGTATGTGAGTTATGTAAGTTATGA-TATGATATATAT---TTAT
1 TAAGTTATGTAAGTATGTGAGTTATGTAAGTTATGACTATGATATATATAAGTTAT
* * *
46016893 GT-A-TTATGTAAGTTATGTGTTTGTTTTGTAAGTTAT-AGTATGATATATATAAGTTAT
1 -TAAGTTATGTAAG-TATGTG--AGTTATGTAAGTTATGACTATGATATATATAAGTTAT
*
46016950 TAAGTTATGTATGTATGTGAGTTATGTAAGTTATGATCTAAT-ATATATATAAGTTAT
1 TAAGTTATGTAAGTATGTGAGTTATGTAAGTTATGA-CT-ATGATATATATAAGTTAT
46017007 TAAGTTA
1 TAAGTTA
46017014 AGATCCAAAG
Statistics
Matches: 149, Mismatches: 10, Indels: 26
0.81 0.05 0.14
Matches are distributed among these distances:
51 8 0.05
52 11 0.07
53 2 0.01
54 25 0.17
55 54 0.36
56 5 0.03
57 34 0.23
58 10 0.07
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (56 bp):
TAAGTTATGTAAGTATGTGAGTTATGTAAGTTATGACTATGATATATATAAGTTAT
Found at i:46016954 original size:109 final size:103
Alignment explanation
Indices: 46016758--46017010 Score: 339
Period size: 109 Copynumber: 2.4 Consensus size: 103
46016748 AGTATAATTA
*
46016758 AGTTATGTAAGTTATGATATGATATATA-TAAGTTATTAAGCTATGTAAGTTATGTGAGTTATGA
1 AGTTATGTAAGTTATGATATGATATATATTAAGTTATTAAGCTATGTAAGTTATGTAAGTTATGA
*
46016822 TATGATATATATAATTTATTAAGTTATGTATGTATGTG
66 TATGATATATATAAGTTATTAAGTTATGTATGTATGTG
* * ** *
46016860 AGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTGTTTGTTTTGTAAG
1 AGTTATGTAAGTTATGATATGATATATA-TTAAG--TTAT-TAAGCTA--TGTAAGTTATGTAAG
46016925 TTAT-AGTATGATATATATAAGTTATTAAGTTATGTATGTATGTG
60 TTATGA-TATGATATATATAAGTTATTAAGTTATGTATGTATGTG
* *
46016969 AGTTATGTAAGTTATGATCTAATATATATATAAGTTATTAAG
1 AGTTATGTAAGTTATGATATGATATATAT-TAAGTTATTAAG
46017011 TTAAGATCCA
Statistics
Matches: 132, Mismatches: 10, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
102 28 0.21
104 3 0.02
106 8 0.06
107 10 0.08
108 2 0.02
109 81 0.61
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (103 bp):
AGTTATGTAAGTTATGATATGATATATATTAAGTTATTAAGCTATGTAAGTTATGTAAGTTATGA
TATGATATATATAAGTTATTAAGTTATGTATGTATGTG
Found at i:46018828 original size:63 final size:63
Alignment explanation
Indices: 46018737--46018873 Score: 175
Period size: 63 Copynumber: 2.2 Consensus size: 63
46018727 TTAAAAGATA
* * * * * *
46018737 AGGATCACACGGGTCAGGGACACAGACGTGTGTCCAGGCCGCGTGACTTACTGTTTGTGATTT
1 AGGACCACACGAGTCAGAGACACAGACGTGTGTCCAGGCCGCGTGACTCACTATTTATGATTT
* * * *
46018800 AGGACCACACGAGTCAGAGACACGGACGTGTGTCCAGGTCGTGTGACTCATTATTTATGATTT
1 AGGACCACACGAGTCAGAGACACAGACGTGTGTCCAGGCCGCGTGACTCACTATTTATGATTT
*
46018863 AGGACCTCACG
1 AGGACCACACG
46018874 GGCAAACAAC
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (63 bp):
AGGACCACACGAGTCAGAGACACAGACGTGTGTCCAGGCCGCGTGACTCACTATTTATGATTT
Found at i:46021766 original size:17 final size:17
Alignment explanation
Indices: 46021730--46021778 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 17
46021720 TATGTTCAAT
46021730 GTTTATATATAATTTTTAGA
1 GTTTATATAT-A--TTTAGA
46021750 GTTTATATATATTTAGA
1 GTTTATATATATTTAGA
* *
46021767 TTTTTTATATAT
1 GTTTATATATAT
46021779 ATTTCATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 16 0.59
19 1 0.04
20 10 0.37
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (17 bp):
GTTTATATATATTTAGA
Found at i:46021791 original size:19 final size:19
Alignment explanation
Indices: 46021751--46021791 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
46021741 ATTTTTAGAG
*
46021751 TTTATATATATTTAGATTT
1 TTTATATATATTTACATTT
46021770 TTTATATATATTT-CATTAT
1 TTTATATATATTTACATT-T
46021789 TTT
1 TTT
46021792 TATTTGTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 3 0.15
19 17 0.85
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTATATATATTTACATTT
Found at i:46021883 original size:19 final size:18
Alignment explanation
Indices: 46021859--46021906 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
46021849 AAATTATGTG
* *
46021859 TATATATTTCTTTATTTTT
1 TATATAATT-TTTATATTT
46021878 TATATAATTTTTATATTT
1 TATATAATTTTTATATTT
*
46021896 TA-ACAATTTTT
1 TATATAATTTTT
46021907 TAAAGTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 8 0.31
18 10 0.38
19 8 0.31
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (18 bp):
TATATAATTTTTATATTT
Found at i:46022265 original size:13 final size:12
Alignment explanation
Indices: 46022230--46022256 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
46022220 TTATTTGTTT
46022230 TTTGTTTTAATA
1 TTTGTTTTAATA
46022242 TTTGTTTTAATA
1 TTTGTTTTAATA
46022254 TTT
1 TTT
46022257 TTATTTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (12 bp):
TTTGTTTTAATA
Found at i:46024958 original size:2 final size:2
Alignment explanation
Indices: 46024914--46024945 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
46024904 TATCGTTCTA
46024914 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46024946 TACGAGTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:46030146 original size:25 final size:25
Alignment explanation
Indices: 46030112--46030161 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
46030102 TGGCTTGTGC
*
46030112 TGCAGCATGCTGGCTCA-CTTCATCA
1 TGCAGCATGCTAGC-CATCTTCATCA
46030137 TGCAGCATGCTAGCCATCTTCATCA
1 TGCAGCATGCTAGCCATCTTCATCA
46030162 CTCCTCCTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (25 bp):
TGCAGCATGCTAGCCATCTTCATCA
Found at i:46034645 original size:25 final size:25
Alignment explanation
Indices: 46034611--46034660 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
46034601 TGGCTTGTGC
*
46034611 TGCAGCATGCTGGCTCA-CTTCATCA
1 TGCAGCATGCTAGC-CATCTTCATCA
46034636 TGCAGCATGCTAGCCATCTTCATCA
1 TGCAGCATGCTAGCCATCTTCATCA
46034661 ATAATATGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (25 bp):
TGCAGCATGCTAGCCATCTTCATCA
Found at i:46036333 original size:17 final size:16
Alignment explanation
Indices: 46036308--46036353 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
46036298 AAAATACAGT
46036308 CCGTATTTTTAGAAAA
1 CCGTATTTTTAGAAAA
* * *
46036324 CCTTTATTTTCATAAAA
1 CC-GTATTTTTAGAAAA
46036341 CCGTATTTTTAGA
1 CCGTATTTTTAGA
46036354 CACGCATTAC
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.33, C:0.15, G:0.09, T:0.43
Consensus pattern (16 bp):
CCGTATTTTTAGAAAA
Found at i:46037220 original size:32 final size:32
Alignment explanation
Indices: 46037141--46037221 Score: 85
Period size: 32 Copynumber: 2.5 Consensus size: 32
46037131 TACCCGTGTG
46037141 GCTT-GCCCGTGTGGGCCCACACACCCAGATTA
1 GCTTAGCCCGTGT-GGCCCACACACCCAGATTA
* * *
46037173 GCTTTGCCCCGTGTGGCCCACACCCCCA-ATTT
1 GCTTAG-CCCGTGTGGCCCACACACCCAGATTA
*
46037205 GGTCTAGCCCGTGTGGC
1 GCT-TAGCCCGTGTGGC
46037222 TTACACGACC
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
32 19 0.45
33 16 0.38
34 7 0.17
ACGTcount: A:0.14, C:0.38, G:0.26, T:0.22
Consensus pattern (32 bp):
GCTTAGCCCGTGTGGCCCACACACCCAGATTA
Found at i:46039606 original size:28 final size:27
Alignment explanation
Indices: 46039543--46039694 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
46039533 ATATTAAGTC
* *
46039543 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
46039570 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
46039598 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
46039625 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
46039653 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
46039680 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46039695 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:46039627 original size:55 final size:55
Alignment explanation
Indices: 46039543--46039719 Score: 264
Period size: 55 Copynumber: 3.2 Consensus size: 55
46039533 ATATTAAGTC
* * *
46039543 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
46039598 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
46039653 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
46039709 CGCACACTTAG
1 CGCACACTTAG
46039720 CGCCAATCTC
Statistics
Matches: 111, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 95 0.86
56 16 0.14
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:46048298 original size:28 final size:27
Alignment explanation
Indices: 46048237--46048333 Score: 140
Period size: 27 Copynumber: 3.6 Consensus size: 27
46048227 TTATTAAGTC
* *
46048237 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
46048264 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
46048292 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
46048319 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46048334 GCACAATTTA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 38 0.59
28 26 0.41
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:46054725 original size:12 final size:12
Alignment explanation
Indices: 46054710--46054735 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46054700 TTTTCCTTTA
46054710 TTTTTTATATAT
1 TTTTTTATATAT
46054722 TTTTTTATATAT
1 TTTTTTATATAT
46054734 TT
1 TT
46054736 ACAATTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTTATATAT
Found at i:46059721 original size:10 final size:10
Alignment explanation
Indices: 46059708--46059775 Score: 50
Period size: 10 Copynumber: 6.6 Consensus size: 10
46059698 TTCTAAAATC
46059708 AAAAAATTTA
1 AAAAAATTTA
46059718 AAAAAGTATTTCA
1 AAAAA--ATTT-A
*
46059731 AAAATATTTTA
1 AAAA-AATTTA
*
46059742 AAAATATTT-
1 AAAAAATTTA
* *
46059751 -TAAAATTAA
1 AAAAAATTTA
46059760 AAAAAATTTA
1 AAAAAATTTA
46059770 AAAAAA
1 AAAAAA
46059776 GTATTTTAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 12
0.69 0.12 0.19
Matches are distributed among these distances:
8 5 0.11
10 21 0.48
11 5 0.11
12 7 0.16
13 5 0.11
14 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (10 bp):
AAAAAATTTA
Found at i:46059726 original size:39 final size:38
Alignment explanation
Indices: 46059671--46059744 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 38
46059661 AAATTAAAAC
46059671 AAAAATTAAAAAAGTATTTTC-AAAATATTCTAAAATCA
1 AAAAATTAAAAAAGTA-TTTCAAAAATATTCTAAAATCA
*
46059709 AAAAATTTAAAAAAGTATTTCAAAAATATTTTAAAA
1 AAAAA-TTAAAAAAGTATTTCAAAAATATTCTAAAA
46059745 ATATTTTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
38 9 0.27
39 24 0.73
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.32
Consensus pattern (38 bp):
AAAAATTAAAAAAGTATTTCAAAAATATTCTAAAATCA
Found at i:46059733 original size:12 final size:11
Alignment explanation
Indices: 46059708--46059797 Score: 64
Period size: 11 Copynumber: 8.4 Consensus size: 11
46059698 TTCTAAAATC
*
46059708 AAAAA-ATTTA
1 AAAAATATTTT
*
46059718 AAAAAGTATTTC
1 AAAAA-TATTTT
46059730 AAAAATATTTT
1 AAAAATATTTT
46059741 AAAAATATTTT
1 AAAAATATTTT
*
46059752 --AAA-A-TTA
1 AAAAATATTTT
* *
46059759 AAAAAAATTTAA
1 AAAAATATTT-T
46059771 AAAAAGTATTTT
1 AAAAA-TATTTT
*
46059783 AAAAGTATTTT
1 AAAAATATTTT
46059794 AAAA
1 AAAA
46059798 TTAAAAAATA
Statistics
Matches: 66, Mismatches: 6, Indels: 15
0.76 0.07 0.17
Matches are distributed among these distances:
7 2 0.03
8 1 0.02
9 6 0.09
10 6 0.09
11 28 0.42
12 19 0.29
13 4 0.06
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:46059761 original size:17 final size:17
Alignment explanation
Indices: 46059739--46059772 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
46059729 CAAAAATATT
* *
46059739 TTAAAAATATTTTAAAA
1 TTAAAAAAAATTTAAAA
46059756 TTAAAAAAAATTTAAAA
1 TTAAAAAAAATTTAAAA
46059773 AAAGTATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TTAAAAAAAATTTAAAA
Found at i:46059815 original size:42 final size:41
Alignment explanation
Indices: 46059730--46059817 Score: 126
Period size: 42 Copynumber: 2.2 Consensus size: 41
46059720 AAAGTATTTC
*
46059730 AAAAATATTTTAAAAATATTTTAAAATTAAAAAAAATTTAAA
1 AAAAATATTTTAAAAATATTTTAAAATTAAAAAAAA-TAAAA
* *
46059772 AAAAGTATTTTAAAAGTATTTTAAAATT--AAAAAATAAAA
1 AAAAATATTTTAAAAATATTTTAAAATTAAAAAAAATAAAA
46059811 AAAAATA
1 AAAAATA
46059818 AAAATATTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
39 10 0.24
40 6 0.14
42 26 0.62
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (41 bp):
AAAAATATTTTAAAAATATTTTAAAATTAAAAAAAATAAAA
Found at i:46063149 original size:19 final size:19
Alignment explanation
Indices: 46063127--46063173 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
46063117 TCAAAGGTTA
* *
46063127 TATATATATTTTGATTATT
1 TATATATATTTTCATAATT
46063146 TATATACT-TTTTCATAATT
1 TATATA-TATTTTCATAATT
*
46063165 TTTATATAT
1 TATATATAT
46063174 ATATTTCAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 1 0.04
19 21 0.91
20 1 0.04
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (19 bp):
TATATATATTTTCATAATT
Found at i:46063233 original size:10 final size:10
Alignment explanation
Indices: 46063216--46063250 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
46063206 AAATTATGTA
46063216 TATATTTTTCT
1 TATATTTTT-T
46063227 T-TATTTTTT
1 TATATTTTTT
46063236 TATATTTTTT
1 TATATTTTTT
46063246 TATAT
1 TATAT
46063251 ATTTAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 2 0.09
10 20 0.87
11 1 0.04
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (10 bp):
TATATTTTTT
Found at i:46064045 original size:187 final size:187
Alignment explanation
Indices: 46063730--46064069 Score: 653
Period size: 187 Copynumber: 1.8 Consensus size: 187
46063720 GCTTGACTAG
46063730 TTGCTTTTTCCCCTGGACTTATACATCGGGTTGTTGACTCCAAGTCTTCGTCTAAAATTTAATAT
1 TTGCTTTTTCCCCTGGACTTATACATCGGGTTGTTGACTCCAAGTCTTCGTCTAAAATTTAATAT
* *
46063795 TTCTTTCGTAATTGTATAATTTCCATGTCAAGTCTTCGTCGTTTGTGTTTTTCCTTTTTCCTTTT
66 TTCTTTCGTAATTGTATAATTTCCATGACAAGTCTTCGTCGTTTGTGTTTTTCCTCTTTCCTTTT
46063860 GCTTTATTGCTTTATTATCTCATAATTAGTATTTTGCTTTTTAGAAAGCAGTAACTT
131 GCTTTATTGCTTTATTATCTCATAATTAGTATTTTGCTTTTTAGAAAGCAGTAACTT
*
46063917 TTGCTTTTTCCTCTGGACTTATACATCGGGTTGTTGACTCCAAGTCTTCGTCTAAAATTTAATAT
1 TTGCTTTTTCCCCTGGACTTATACATCGGGTTGTTGACTCCAAGTCTTCGTCTAAAATTTAATAT
46063982 TTCTTTCGTAATTGTATAATTTCCATGACAAGTCTTCGTCGTTTGTGTTTTTCCTCTTTCCTTTT
66 TTCTTTCGTAATTGTATAATTTCCATGACAAGTCTTCGTCGTTTGTGTTTTTCCTCTTTCCTTTT
46064047 GCTTTATTGCTTTATTATCTCAT
131 GCTTTATTGCTTTATTATCTCAT
46064070 CATAATTAGA
Statistics
Matches: 150, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
187 150 1.00
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (187 bp):
TTGCTTTTTCCCCTGGACTTATACATCGGGTTGTTGACTCCAAGTCTTCGTCTAAAATTTAATAT
TTCTTTCGTAATTGTATAATTTCCATGACAAGTCTTCGTCGTTTGTGTTTTTCCTCTTTCCTTTT
GCTTTATTGCTTTATTATCTCATAATTAGTATTTTGCTTTTTAGAAAGCAGTAACTT
Found at i:46065228 original size:41 final size:41
Alignment explanation
Indices: 46065157--46065419 Score: 340
Period size: 41 Copynumber: 6.6 Consensus size: 41
46065147 AGATCGAGCC
*
46065157 TTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGGGGCT
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGCT
* * * *
46065198 TTATCGGCGTTTTTGAAAAGGCACCACTAATGCTCGGGGCT
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGCT
*
46065239 TTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGCT
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGCT
* * * *
46065280 TTAGCGGCGTTTTTGAGAAAGTGCCGCTAATACT----TCT
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGCT
** *
46065317 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCTAGTCT
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGCT
* *
46065358 TTAGCGGAGTTTTTGAAAAAGCACCGCTAATGCT--GGGCT
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGCT
*
46065397 TTAGCGGCGTTTTTAAAAAAGCG
1 TTAGCGGCGTTTTTGAAAAAGCG
46065420 TCACTAAAAC
Statistics
Matches: 195, Mismatches: 23, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
37 33 0.17
39 23 0.12
41 139 0.71
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (41 bp):
TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGCT
Found at i:46065333 original size:119 final size:117
Alignment explanation
Indices: 46065196--46065410 Score: 322
Period size: 119 Copynumber: 1.8 Consensus size: 117
46065186 ATGCTCGGGG
* * * * *
46065196 CTTTATCGGCGTTTTTGAAAAGGCACCACTAATGCTCGGGGCTTTAGCGGCGTTTTTGAGAAAGC
1 CTTTAGCGGCGTTTTTGAAAAAGCACCACTAATGCTCGAGGCTTTAGCGGAGTTTTTGAAAAAGC
*
46065261 GCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGAGAAAGTGCCGCTAATACTT
66 ACCGCTAATGCT--GGGCTTTAGCGGCGTTTTTGAGAAAGTGCCGCTAATACTT
* * * *
46065315 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCTAGTCTTTAGCGGAGTTTTTGAAAAAGC
1 CTTTAGCGGCGTTTTTGAAAAAGCACCACTAATGCTCGAGGCTTTAGCGGAGTTTTTGAAAAAGC
46065380 ACCGCTAATGCTGGGCTTTAGCGGCGTTTTT
66 ACCGCTAATGCTGGGCTTTAGCGGCGTTTTT
46065411 AAAAAAGCGT
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
117 19 0.22
119 67 0.78
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.32
Consensus pattern (117 bp):
CTTTAGCGGCGTTTTTGAAAAAGCACCACTAATGCTCGAGGCTTTAGCGGAGTTTTTGAAAAAGC
ACCGCTAATGCTGGGCTTTAGCGGCGTTTTTGAGAAAGTGCCGCTAATACTT
Found at i:46065363 original size:78 final size:77
Alignment explanation
Indices: 46065157--46065419 Score: 321
Period size: 78 Copynumber: 3.3 Consensus size: 77
46065147 AGATCGAGCC
*
46065157 TTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGGGGCTTTATCGGCGTTTTTGAAAAGGCAC
1 TTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGAAAAGG--C
*
46065222 CACTAATGCTCGGGGCT
64 CGCTAATGCT---GGCT
* *
46065239 TTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGAGAAAGTGC
1 TTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGA-AAAG-GC
* *
46065304 CGCTAATACT-TCT
64 CGCTAATGCTGGCT
* ** * * *
46065317 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCTAGTCTTTAGCGGAGTTTTTGAAAAAGCAC
1 TTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTG-AAAAG-GC
46065382 CGCTAATGCTGGGCT
64 CGCTAATGCT-GGCT
46065397 TTAGCGGCGTTTTTAAAAAAGCG
1 TTAGCGGCGTTTTTAAAAAAGCG
46065420 TCACTAAAAC
Statistics
Matches: 160, Mismatches: 16, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
78 67 0.42
79 1 0.01
80 24 0.15
82 63 0.39
83 4 0.03
84 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (77 bp):
TTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGAAAAGGCCG
CTAATGCTGGCT
Found at i:46065811 original size:15 final size:14
Alignment explanation
Indices: 46065773--46065807 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
46065763 ACTATTTTAA
46065773 GGTTTAGGGAGTAT
1 GGTTTAGGGAGTAT
*
46065787 GGATTTAGGGATTAT
1 GG-TTTAGGGAGTAT
46065802 GGTTTA
1 GGTTTA
46065808 AGGGTTGGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.23, C:0.00, G:0.37, T:0.40
Consensus pattern (14 bp):
GGTTTAGGGAGTAT
Found at i:46065828 original size:21 final size:20
Alignment explanation
Indices: 46065794--46065834 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
46065784 TATGGATTTA
*
46065794 GGGATTATGGTTTAAGGGTT
1 GGGATTAAGGTTTAAGGGTT
*
46065814 GGGATTTAAGGTTTAGGGGTT
1 GGGA-TTAAGGTTTAAGGGTT
46065835 AGGGGTTAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (20 bp):
GGGATTAAGGTTTAAGGGTT
Found at i:46065999 original size:7 final size:7
Alignment explanation
Indices: 46065938--46065998 Score: 59
Period size: 7 Copynumber: 8.6 Consensus size: 7
46065928 TAACTTATAT
*
46065938 TTTAAGG
1 TTTATGG
46065945 TTTATGG
1 TTTATGG
* *
46065952 ATGATGGG
1 TTTAT-GG
*
46065960 TTTAGGG
1 TTTATGG
*
46065967 ATTATGG
1 TTTATGG
46065974 TTTATGG
1 TTTATGG
46065981 TTTATGG
1 TTTATGG
*
46065988 TTTAAGG
1 TTTATGG
46065995 TTTA
1 TTTA
46065999 AAGGTTAGTG
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
7 39 0.91
8 4 0.09
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (7 bp):
TTTATGG
Found at i:46066004 original size:29 final size:29
Alignment explanation
Indices: 46065939--46066004 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
46065929 AACTTATATT
*
46065939 TTAAGGTTTATGGATGATGGGTTTAGGGA
1 TTAAGGTTTATGGATGATGGGTTTAAGGA
* * * *
46065968 TTATGGTTTATGGTTTAT-GGTTTAAGGT
1 TTAAGGTTTATGGATGATGGGTTTAAGGA
46065996 TTAAAGGTT
1 TT-AAGGTT
46066005 AGTGGTTAGG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
28 10 0.33
29 20 0.67
ACGTcount: A:0.23, C:0.00, G:0.32, T:0.45
Consensus pattern (29 bp):
TTAAGGTTTATGGATGATGGGTTTAAGGA
Found at i:46072533 original size:16 final size:16
Alignment explanation
Indices: 46072512--46072561 Score: 57
Period size: 16 Copynumber: 3.0 Consensus size: 16
46072502 ATAATCCCAT
46072512 AAAAATTATAAAAATA
1 AAAAATTATAAAAATA
*
46072528 AAAAATTATAAAGATTTCA
1 AAAAATTATAAA-A-AT-A
46072547 AAAAATTA-AAAAATA
1 AAAAATTATAAAAATA
46072562 TTTTAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
15 1 0.03
16 13 0.45
17 2 0.07
18 4 0.14
19 9 0.31
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (16 bp):
AAAAATTATAAAAATA
Found at i:46072569 original size:20 final size:19
Alignment explanation
Indices: 46072526--46072571 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
46072516 ATTATAAAAA
*
46072526 TAAAAAATTATAAAGATTT
1 TAAAAAATTAAAAAGATTT
* *
46072545 CAAAAAATTAAAAAATATTT
1 TAAAAAATT-AAAAAGATTT
46072565 TAAAAAA
1 TAAAAAA
46072572 AATTATATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (19 bp):
TAAAAAATTAAAAAGATTT
Found at i:46072707 original size:2 final size:2
Alignment explanation
Indices: 46072700--46072731 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
46072690 AAAATTCTAA
46072700 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46072732 TAAGTAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:46074489 original size:13 final size:14
Alignment explanation
Indices: 46074465--46074498 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
46074455 GTTAATTTTC
46074465 AAAATTTCAAAAAA
1 AAAATTTCAAAAAA
*
46074479 AAAATTT-AAAAAT
1 AAAATTTCAAAAAA
46074492 AAAATTT
1 AAAATTT
46074499 GCATTTTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (14 bp):
AAAATTTCAAAAAA
Found at i:46074544 original size:30 final size:31
Alignment explanation
Indices: 46074493--46074550 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
46074483 TTTAAAAATA
*
46074493 AAATTTGCATTTTGACCCCTAAACTTTTCATT
1 AAATTTGCATTTTGAACCCTAAA-TTTTCATT
46074525 AAATTT-CATTTT-AACCCTAAATTTTC
1 AAATTTGCATTTTGAACCCTAAATTTTC
46074551 TAAAAATTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 5 0.20
30 8 0.32
31 6 0.24
32 6 0.24
ACGTcount: A:0.31, C:0.21, G:0.03, T:0.45
Consensus pattern (31 bp):
AAATTTGCATTTTGAACCCTAAATTTTCATT
Found at i:46074557 original size:29 final size:30
Alignment explanation
Indices: 46074490--46074569 Score: 85
Period size: 29 Copynumber: 2.7 Consensus size: 30
46074480 AAATTTAAAA
*
46074490 ATAAAATTTGCATTTTGACCCCTAAACTTTTC
1 ATAAAATTT-CATTTT-AACCCTAAACTTTTC
*
46074522 ATTAAATTTCATTTTAACCCTAAA-TTTTC
1 ATAAAATTTCATTTTAACCCTAAACTTTTC
*
46074551 -TAAAAATTACA-TTTAACCC
1 AT-AAAATTTCATTTTAACCC
46074570 CAGAAGTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
28 9 0.21
29 12 0.28
30 8 0.19
31 6 0.14
32 8 0.19
ACGTcount: A:0.36, C:0.20, G:0.03, T:0.41
Consensus pattern (30 bp):
ATAAAATTTCATTTTAACCCTAAACTTTTC
Found at i:46094997 original size:18 final size:18
Alignment explanation
Indices: 46094970--46095026 Score: 96
Period size: 18 Copynumber: 3.2 Consensus size: 18
46094960 TACGACCGTT
46094970 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
46094988 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
46095006 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
46095024 TAC
1 TAC
46095027 AGTAGTTGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:46098120 original size:8 final size:8
Alignment explanation
Indices: 46098107--46098134 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
46098097 GATTCTCGGC
46098107 ATGGAAAT
1 ATGGAAAT
46098115 ATGGAAAT
1 ATGGAAAT
46098123 ATGGAAAT
1 ATGGAAAT
46098131 ATGG
1 ATGG
46098135 GTTGGCATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.29, T:0.25
Consensus pattern (8 bp):
ATGGAAAT
Found at i:46099957 original size:144 final size:144
Alignment explanation
Indices: 46099513--46099947 Score: 522
Period size: 144 Copynumber: 3.0 Consensus size: 144
46099503 GATAAGCTGC
* * * *
46099513 TCAAGTTTCCTATGGAAGTAGGGATTTGTCCAGAGAATGTGTTATTAGACAGATACAATTGACTA
1 TCAAGTTTCCTATGGAAGTAGGGATTTGTCCAGAGAATGTGTTATTGGACAGATCCAATTCACTG
* * * *
46099578 AGAGATTTAAGCATCCCTACCTCTTTAGGTATCAATCCAAAAAACATATTGTCAAAAAGGCTAAG
66 AGAGATTTAAGCATCCCTACCTCTTTAGGTATCAATCCAGAAAACATATTTTGAAAAAGGATAAG
46099643 AGTAGTTAAGTTGG
131 AGTAGTTAAGTTGG
* *
46099657 TCAAGTTTCCTATGGAAGTAGGGATTTGTCCAGAGAATGTGTTACTGGACAGATCCAATTTACTG
1 TCAAGTTTCCTATGGAAGTAGGGATTTGTCCAGAGAATGTGTTATTGGACAGATCCAATTCACTG
* * ** * * *
46099722 AGAGATTTAAGCATCCCTACCTCTTTAGGGATGACGCCACTG-AGA-TTATTATCGTACAAAA--
66 AGAGATTTAAGCATCCCTACCTCTTTAGGTATCAATCCA--GAAAACATATT-TTG-A-AAAAGG
*** *
46099783 A-AAGA-TGAACCAAGTTGC
126 ATAAGAGT-AGTTAAGTTGG
* * *
46099801 TTAAGTTTCCTATCGAAGTAGGGATTTGTCCACAGAATGTGTTATTGGACAGATCCAATTCACTG
1 TCAAGTTTCCTATGGAAGTAGGGATTTGTCCAGAGAATGTGTTATTGGACAGATCCAATTCACTG
* * *
46099866 AGAGATTTAAGCATCCCTACCTCTTTAGGTACCAATCCAGAAAACATATTTTGAGAAAGGGTAAG
66 AGAGATTTAAGCATCCCTACCTCTTTAGGTATCAATCCAGAAAACATATTTTGAAAAAGGATAAG
*
46099931 AGTAGTTAAGCTGG
131 AGTAGTTAAGTTGG
46099945 TCA
1 TCA
46099948 TGCTCCCTAT
Statistics
Matches: 238, Mismatches: 41, Indels: 24
0.79 0.14 0.08
Matches are distributed among these distances:
141 3 0.01
142 2 0.01
143 5 0.02
144 220 0.92
145 3 0.01
146 1 0.00
147 4 0.02
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (144 bp):
TCAAGTTTCCTATGGAAGTAGGGATTTGTCCAGAGAATGTGTTATTGGACAGATCCAATTCACTG
AGAGATTTAAGCATCCCTACCTCTTTAGGTATCAATCCAGAAAACATATTTTGAAAAAGGATAAG
AGTAGTTAAGTTGG
Found at i:46101060 original size:111 final size:111
Alignment explanation
Indices: 46100866--46101088 Score: 392
Period size: 111 Copynumber: 2.0 Consensus size: 111
46100856 AATTCTAAGA
*
46100866 TCATTTGAATTTATCATTGTGAGCAAAGCTTTGATCTTTTAGTTTATTTATTTGTCATCCTACCA
1 TCATTTGAATTTATAATTGTGAGCAAAGCTTTGATCTTTTAGTTTATTTATTTGTCATCCTACCA
* *
46100931 TCATCAAATCTTGATTGTAGCTAAAATGTCACTATATTTAGTAAAT
66 TCATCAAATATTGATTGTAGCTAAAATGTCACTATATTCAGTAAAT
*
46100977 TCATTTGAATTTATAATTGTGAGCAAAGCTTTGATCTTTTAGTTTATTTATTTGTCATCCTATCA
1 TCATTTGAATTTATAATTGTGAGCAAAGCTTTGATCTTTTAGTTTATTTATTTGTCATCCTACCA
* *
46101042 TCATTAAATATTGATTGTAGTTAAAATGTCACTATATTCAGTAAAT
66 TCATCAAATATTGATTGTAGCTAAAATGTCACTATATTCAGTAAAT
46101088 T
1 T
46101089 TAATTTTTTT
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 106 1.00
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.45
Consensus pattern (111 bp):
TCATTTGAATTTATAATTGTGAGCAAAGCTTTGATCTTTTAGTTTATTTATTTGTCATCCTACCA
TCATCAAATATTGATTGTAGCTAAAATGTCACTATATTCAGTAAAT
Found at i:46110722 original size:37 final size:37
Alignment explanation
Indices: 46110681--46110755 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
46110671 TGAGAAAAAA
46110681 GTTAGAAAAATTCAAACTGTAGGAGTCACATGGCTGG
1 GTTAGAAAAATTCAAACTGTAGGAGTCACATGGCTGG
46110718 GTTAGAAAAATTCAAACTGTAGGAGTCACATGGCTGG
1 GTTAGAAAAATTCAAACTGTAGGAGTCACATGGCTGG
46110755 G
1 G
46110756 ACACACGCCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (37 bp):
GTTAGAAAAATTCAAACTGTAGGAGTCACATGGCTGG
Found at i:46121756 original size:14 final size:14
Alignment explanation
Indices: 46121711--46121759 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 14
46121701 ACACGACAAC
46121711 ATTAAATATTAAAA
1 ATTAAATATTAAAA
*
46121725 ATCATAAAATATAAAAA
1 AT--T-AAATATTAAAA
*
46121742 ATTAAATATTTAAA
1 ATTAAATATTAAAA
46121756 ATTA
1 ATTA
46121760 TTAAAATGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
14 15 0.52
15 1 0.03
16 1 0.03
17 12 0.41
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (14 bp):
ATTAAATATTAAAA
Found at i:46121762 original size:17 final size:17
Alignment explanation
Indices: 46121711--46121764 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 17
46121701 ACACGACAAC
* *
46121711 ATTAAATATTAAAAATC
1 ATTAAATATTTAAAATA
*
46121728 A-TAAA-ATATAAAA-A
1 ATTAAATATTTAAAATA
*
46121742 ATTAAATATTTAAAATT
1 ATTAAATATTTAAAATA
46121759 ATTAAA
1 ATTAAA
46121765 ATGGACACAA
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
14 1 0.03
15 10 0.34
16 11 0.38
17 7 0.24
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (17 bp):
ATTAAATATTTAAAATA
Done.