Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 168 of 205
Found at i:50109088 original size:33 final size:33
Alignment explanation
Indices: 50109046--50109175 Score: 143
Period size: 33 Copynumber: 3.6 Consensus size: 33
50109036 ATAGATAAAT
*
50109046 ATATATGTATGCATTCGGCATAGGTGGATATAA
1 ATATATGTATGCATTCGGCATAGGTGAATATAA
*
50109079 ATATATGTATGCATTCGGCATAGGTGAAAATAAGGGTAT
1 ATATATGTATGCATTCGGCATAGGTG--AAT-A---TAA
*
50109118 ATATATGTATGCATTCGGCATAGGTGAAAATAA
1 ATATATGTATGCATTCGGCATAGGTGAATATAA
50109151 GTGTATATATGTATGCATTCGGCAT
1 ----ATATATGTATGCATTCGGCAT
50109176 TTATGGTTGA
Statistics
Matches: 83, Mismatches: 4, Indels: 16
0.81 0.04 0.16
Matches are distributed among these distances:
33 28 0.34
35 2 0.02
36 2 0.02
37 23 0.28
39 28 0.34
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.33
Consensus pattern (33 bp):
ATATATGTATGCATTCGGCATAGGTGAATATAA
Found at i:50109130 original size:39 final size:37
Alignment explanation
Indices: 50109044--50109175 Score: 191
Period size: 39 Copynumber: 3.6 Consensus size: 37
50109034 TGATAGATAA
*
50109044 ATATATATGTATGCATTCGGCATAGGTG--GAT-A-T
1 ATATATATGTATGCATTCGGCATAGGTGAAAATAAGT
*
50109077 AAATATATGTATGCATTCGGCATAGGTGAAAATAAGGGT
1 ATATATATGTATGCATTCGGCATAGGTGAAAATAA--GT
50109116 ATATATATGTATGCATTCGGCATAGGTGAAAATAAGT
1 ATATATATGTATGCATTCGGCATAGGTGAAAATAAGT
*
50109153 GTATATATGTATGCATTCGGCAT
1 ATATATATGTATGCATTCGGCAT
50109176 TTATGGTTGA
Statistics
Matches: 89, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
33 27 0.30
35 2 0.02
36 1 0.01
37 24 0.27
39 35 0.39
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.33
Consensus pattern (37 bp):
ATATATATGTATGCATTCGGCATAGGTGAAAATAAGT
Found at i:50112464 original size:21 final size:22
Alignment explanation
Indices: 50112434--50112478 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
50112424 GAGCAAATTG
50112434 TTGATTCTATTTCCTTTTTG-AT
1 TTGATTCTA-TTCCTTTTTGTAT
*
50112456 TTGA-TCTATTCTTTTTTGTAT
1 TTGATTCTATTCCTTTTTGTAT
50112477 TT
1 TT
50112479 CTCTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 8 0.38
22 4 0.19
ACGTcount: A:0.13, C:0.11, G:0.09, T:0.67
Consensus pattern (22 bp):
TTGATTCTATTCCTTTTTGTAT
Found at i:50116907 original size:21 final size:21
Alignment explanation
Indices: 50116881--50116920 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
50116871 TGTTGTAACG
50116881 TCTAATTCACATAAAAATAAA
1 TCTAATTCACATAAAAATAAA
50116902 TCTAATTCACATAAAAATA
1 TCTAATTCACATAAAAATA
50116921 GTTTTCTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (21 bp):
TCTAATTCACATAAAAATAAA
Found at i:50119629 original size:17 final size:18
Alignment explanation
Indices: 50119602--50119637 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
50119592 CAAAATCTCA
50119602 AAAAGGAGGTTGAACCCC
1 AAAAGGAGGTTGAACCCC
*
50119620 AAAA-GAGGTTGAGCCCC
1 AAAAGGAGGTTGAACCCC
50119637 A
1 A
50119638 CTTTAACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.39, C:0.22, G:0.28, T:0.11
Consensus pattern (18 bp):
AAAAGGAGGTTGAACCCC
Found at i:50126111 original size:30 final size:30
Alignment explanation
Indices: 50126067--50126128 Score: 99
Period size: 29 Copynumber: 2.1 Consensus size: 30
50126057 GATACAGGAA
50126067 AATTGAATCAAAATTAAAATTTTATGTATAT
1 AATTGAATCAAAATTAAAA-TTTATGTATAT
*
50126098 AATTGAA-CAAAATTAAAATTTGTGTATAT
1 AATTGAATCAAAATTAAAATTTATGTATAT
50126127 AA
1 AA
50126129 CTACACATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 12 0.40
30 11 0.37
31 7 0.23
ACGTcount: A:0.50, C:0.03, G:0.08, T:0.39
Consensus pattern (30 bp):
AATTGAATCAAAATTAAAATTTATGTATAT
Found at i:50126415 original size:43 final size:42
Alignment explanation
Indices: 50126311--50126415 Score: 95
Period size: 43 Copynumber: 2.4 Consensus size: 42
50126301 GCGCCGCAAA
50126311 AAACGCCGCT-AAAGAACATGACCTTTAGCGGAGCTTTTATCAC
1 AAACGCCGCTAAAAG-A-ATGACCTTTAGCGGAGCTTTTATCAC
* * * *** * *
50126354 AAACGCCGTTATAGAGAATGACTTTTAGCGGCTTTTTTTTTCAG
1 AAACGCCGCTA-AAAGAATGACCTTTAGCGG-AGCTTTTATCAC
50126398 AAACGCCGCTAAAAGAAT
1 AAACGCCGCTAAAAGAAT
50126416 CGTTCTTTAG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
43 28 0.57
44 18 0.37
45 3 0.06
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (42 bp):
AAACGCCGCTAAAAGAATGACCTTTAGCGGAGCTTTTATCAC
Found at i:50129522 original size:82 final size:82
Alignment explanation
Indices: 50129375--50129542 Score: 180
Period size: 82 Copynumber: 2.0 Consensus size: 82
50129365 GCACGCGTAT
* ** ** *
50129375 TGAAATGATACACCGGCACAAAGCCTGCTAGGCCTAAAGCCTGGTTTGGTACACCGGCATGAAGC
1 TGAAATAATACACCGGCACAAAGCCTGCTAGGCCTAAAGCCTGAATTAATACACCGGAATGAAGC
* * *
50129440 CTAGTAGACATAAAGTC
66 CTACTAGACACAAAGCC
* *
50129457 TGAAATAATTCACCGGCA-ATAAGCCTGCTAGGCAC-AAAGCCTGAATTAATTCACCGGTAAT-A
1 TGAAATAATACACCGGCACA-AAGCCTGCTAGGC-CTAAAGCCTGAATTAATACACCGG-AATGA
*
50129519 AGCCTACTAGGCACAAAGCC
63 AGCCTACTAGACACAAAGCC
50129539 TGAA
1 TGAA
50129543 TTTCACTGAT
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
81 1 0.01
82 67 0.94
83 3 0.04
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.20
Consensus pattern (82 bp):
TGAAATAATACACCGGCACAAAGCCTGCTAGGCCTAAAGCCTGAATTAATACACCGGAATGAAGC
CTACTAGACACAAAGCC
Found at i:50129543 original size:41 final size:41
Alignment explanation
Indices: 50129426--50129544 Score: 159
Period size: 41 Copynumber: 2.9 Consensus size: 41
50129416 TGGTTTGGTA
* * * * *
50129426 CACCGGC-ATGAAGCCTAGTAGACATAAAGTCTGAAATAATT
1 CACCGGCAAT-AAGCCTACTAGGCACAAAGCCTGAATTAATT
*
50129467 CACCGGCAATAAGCCTGCTAGGCACAAAGCCTGAATTAATT
1 CACCGGCAATAAGCCTACTAGGCACAAAGCCTGAATTAATT
*
50129508 CACCGGTAATAAGCCTACTAGGCACAAAGCCTGAATT
1 CACCGGCAATAAGCCTACTAGGCACAAAGCCTGAATT
50129545 TCACTGATAC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 67 0.97
42 2 0.03
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.20
Consensus pattern (41 bp):
CACCGGCAATAAGCCTACTAGGCACAAAGCCTGAATTAATT
Found at i:50133787 original size:10 final size:10
Alignment explanation
Indices: 50133774--50133815 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
50133764 TTCTAATATA
50133774 ATATATATGT
1 ATATATATGT
50133784 ATATATATGT
1 ATATATATGT
* * *
50133794 GTATGTGTGT
1 ATATATATGT
50133804 ATATATATGT
1 ATATATATGT
50133814 AT
1 AT
50133816 GCGCCCTATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (10 bp):
ATATATATGT
Found at i:50134888 original size:40 final size:41
Alignment explanation
Indices: 50134844--50135062 Score: 142
Period size: 40 Copynumber: 5.3 Consensus size: 41
50134834 TTGGTCCAAA
* * *
50134844 CGCCGCTAATGCTCGATCTATAGTGGCG-TTTTTCAACAAG
1 CGCCGCTAATGCTCGATCTATAGCGGCGTTTTTTAAAAAAG
* *
50134884 CGCCGCTAATTCTCGATCTATTGCGGCGTTTTTTAAAAAAG
1 CGCCGCTAATGCTCGATCTATAGCGGCGTTTTTTAAAAAAG
* * * * *
50134925 CGCCGCTAATGCCACTATCAACTTTTTTGCGGCGTTTTTT-GAAAAG
1 CGCCGCTAATG---C--TCGA-TCTATAGCGGCGTTTTTTAAAAAAG
* ** * * *
50134971 CGACATTAATGCTCGATCTATAGCAGTGTTTTTCT--ACAAG
1 CGCCGCTAATGCTCGATCTATAGCGGCGTTTTT-TAAAAAAG
* * * **
50135011 CGCCGCTAATTCTCAATCTATTGCAACGTTTTTT-AAAAAG
1 CGCCGCTAATGCTCGATCTATAGCGGCGTTTTTTAAAAAAG
*
50135051 CACCGCTAATGC
1 CGCCGCTAATGC
50135063 CACTAAAGCT
Statistics
Matches: 139, Mismatches: 31, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
39 1 0.01
40 80 0.58
41 24 0.17
43 1 0.01
44 1 0.01
46 16 0.12
47 16 0.12
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (41 bp):
CGCCGCTAATGCTCGATCTATAGCGGCGTTTTTTAAAAAAG
Found at i:50135208 original size:40 final size:41
Alignment explanation
Indices: 50135128--50135211 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 41
50135118 TGCCACTAGG
*
50135128 GCTTGATCGATAGCAGCAATTTTTACAAAAGCGCCACTAAT
1 GCTTGATCGATAGCAGCAATTTTTACAAAAGCACCACTAAT
* * * *
50135169 GCTTGATCTATAGTAGC-GTTTTT-CAAAAAGCACCGCTAAT
1 GCTTGATCGATAGCAGCAATTTTTAC-AAAAGCACCACTAAT
50135209 GCT
1 GCT
50135212 CAACCTATAG
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.03
40 21 0.57
41 15 0.41
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (41 bp):
GCTTGATCGATAGCAGCAATTTTTACAAAAGCACCACTAAT
Found at i:50140281 original size:21 final size:21
Alignment explanation
Indices: 50140239--50140281 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
50140229 TTTTTTCTGA
* *
50140239 AATAAAATTGTGTCTTGTATC
1 AATAAAATTGTGTCATGCATC
50140260 AATAAAATTGTGTCATGCATC
1 AATAAAATTGTGTCATGCATC
50140281 A
1 A
50140282 TCCAATCAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (21 bp):
AATAAAATTGTGTCATGCATC
Found at i:50141128 original size:107 final size:107
Alignment explanation
Indices: 50140938--50141228 Score: 465
Period size: 107 Copynumber: 2.7 Consensus size: 107
50140928 TTTTGTTGGT
* *
50140938 TTGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAAATGTTATTGATTTGTTAGTGAGTAGAAGAT
1 TTGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAATTGTTATTGATTTGTTAGTCAGTAGAAGAT
* * *
50141003 AAAACTGGAAATTGTTGCATTTGTTTCGATTTTGTTCTTGAA
66 GAAACTGGAAATTCTTGCATTTGTTTCGATATTGTTCTTGAA
* * *
50141045 TTGTTCTGGCAGTTGTTTTGATAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTCAGTAGAAGAT
1 TTGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAATTGTTATTGATTTGTTAGTCAGTAGAAGAT
* *
50141110 GAAACTGGAAATTCTTGCATTTGTTTTGATATTGTTCTTGAT
66 GAAACTGGAAATTCTTGCATTTGTTTCGATATTGTTCTTGAA
* *
50141152 TTGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAATTGTTTTTGATTTGTTAGTCAGTAGAATAT
1 TTGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAATTGTTATTGATTTGTTAGTCAGTAGAAGAT
*
50141217 GAAAATGGAAAT
66 GAAACTGGAAAT
50141229 CAAATGCTGT
Statistics
Matches: 169, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
107 169 1.00
ACGTcount: A:0.25, C:0.07, G:0.23, T:0.44
Consensus pattern (107 bp):
TTGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAATTGTTATTGATTTGTTAGTCAGTAGAAGAT
GAAACTGGAAATTCTTGCATTTGTTTCGATATTGTTCTTGAA
Found at i:50141155 original size:11 final size:11
Alignment explanation
Indices: 50141121--50141158 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
50141111 AAACTGGAAA
50141121 TTCTTGCATTTG
1 TTCTTG-ATTTG
50141133 TT-TTGATATTG
1 TTCTTGAT-TTG
50141144 TTCTTGATTTG
1 TTCTTGATTTG
50141155 TTCT
1 TTCT
50141159 GGAAATTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 2 0.08
11 15 0.62
12 7 0.29
ACGTcount: A:0.11, C:0.11, G:0.16, T:0.63
Consensus pattern (11 bp):
TTCTTGATTTG
Found at i:50141166 original size:23 final size:23
Alignment explanation
Indices: 50141121--50141202 Score: 80
Period size: 23 Copynumber: 3.6 Consensus size: 23
50141111 AAACTGGAAA
* *
50141121 TTCTTGCATTTGTT-TTGATATTG
1 TTCTTG-ATTTGTTCTGGAAATTG
50141144 TTCTTGATTTGTTCTGGAAATTG
1 TTCTTGATTTGTTCTGGAAATTG
*
50141167 TT-TTGA-TAGTCTGCTGGAAATTG
1 TTCTTGATTTGT-T-CTGGAAATTG
*
50141190 TTTTTGATTTGTT
1 TTCTTGATTTGTT
50141203 AGTCAGTAGA
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
21 3 0.06
22 12 0.24
23 27 0.54
24 5 0.10
25 3 0.06
ACGTcount: A:0.16, C:0.07, G:0.21, T:0.56
Consensus pattern (23 bp):
TTCTTGATTTGTTCTGGAAATTG
Found at i:50142362 original size:37 final size:37
Alignment explanation
Indices: 50142321--50142444 Score: 221
Period size: 37 Copynumber: 3.4 Consensus size: 37
50142311 CATAAATAAA
50142321 TAAACTAATCAATGTTCAAACTTTGAACATGCTTTAT
1 TAAACTAATCAATGTTCAAACTTTGAACATGCTTTAT
*
50142358 TAAACTAATCAATGTTCAAACTTCGAACATGCTTTAT
1 TAAACTAATCAATGTTCAAACTTTGAACATGCTTTAT
* *
50142395 TAAACTAATCAATGTTAAAACTTTGAACATGCTTTAA
1 TAAACTAATCAATGTTCAAACTTTGAACATGCTTTAT
50142432 TAAACTAATCAAT
1 TAAACTAATCAAT
50142445 ATATTTATAC
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.35
Consensus pattern (37 bp):
TAAACTAATCAATGTTCAAACTTTGAACATGCTTTAT
Found at i:50142696 original size:33 final size:33
Alignment explanation
Indices: 50142659--50142724 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
50142649 AATCTAACAA
50142659 ATACCAAAAATTAATTTTAGGTCAATTATACAT
1 ATACCAAAAATTAATTTTAGGTCAATTATACAT
*
50142692 ATACCAACAATTAATTTTAGGTCAATTATACAT
1 ATACCAAAAATTAATTTTAGGTCAATTATACAT
50142725 GCTTTATAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.36
Consensus pattern (33 bp):
ATACCAAAAATTAATTTTAGGTCAATTATACAT
Found at i:50144324 original size:11 final size:11
Alignment explanation
Indices: 50144308--50144334 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
50144298 TAGAAATTAG
50144308 TTTGTGAAACT
1 TTTGTGAAACT
50144319 TTTGTGAAACT
1 TTTGTGAAACT
50144330 TTTGT
1 TTTGT
50144335 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:50145880 original size:91 final size:91
Alignment explanation
Indices: 50145733--50145940 Score: 335
Period size: 91 Copynumber: 2.3 Consensus size: 91
50145723 TTGATTTTAG
* *
50145733 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
50145798 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
50145825 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
50145890 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
50145916 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
50145941 GTTATAATTA
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
91 92 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:50145909 original size:26 final size:28
Alignment explanation
Indices: 50145855--50145915 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
50145845 TATTATCAAG
* *
50145855 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
50145883 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
50145909 AATTATA
1 AATTATA
50145916 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:50145915 original size:44 final size:43
Alignment explanation
Indices: 50145773--50145915 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
50145763 GAATTTTATG
* *
50145773 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
50145817 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
50145864 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
50145908 AAATTATA
1 AAATTATA
50145916 CAAATTCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:50146111 original size:16 final size:16
Alignment explanation
Indices: 50146090--50146131 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
50146080 TTATTAAATT
*
50146090 ATATATTTTAATTATA
1 ATATATTTTAATAATA
50146106 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
50146121 AT-TATGTTTAA
1 ATATAT-TTTAA
50146132 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:50146116 original size:15 final size:15
Alignment explanation
Indices: 50146081--50146122 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
50146071 TTAAGAATTT
*
50146081 TATTAAATTAT-ATA
1 TATTTAATTATAATA
50146095 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
50146109 TATTTAATAATAAT
1 TATTTAATTATAAT
50146123 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:50146325 original size:44 final size:45
Alignment explanation
Indices: 50146276--50146366 Score: 132
Period size: 45 Copynumber: 2.0 Consensus size: 45
50146266 ACCTCTATTC
*
50146276 CATTCAACCAAACACA-GGA-ATACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACA-ATGGATATACTATTACGCCTCTATTCCACTA
* *
50146320 CATTCAACCAAACAATTGATTTACTATTACGCCTCTATTCCACTA
1 CATTCAACCAAACAATGGATATACTATTACGCCTCTATTCCACTA
50146365 CA
1 CA
50146367 GCGAACCAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 16 0.38
45 25 0.60
ACGTcount: A:0.35, C:0.30, G:0.05, T:0.30
Consensus pattern (45 bp):
CATTCAACCAAACAATGGATATACTATTACGCCTCTATTCCACTA
Found at i:50150832 original size:28 final size:28
Alignment explanation
Indices: 50150800--50150861 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 28
50150790 CTATAAAATA
50150800 ATAAATCCTAAAC-CACAAACTCTAA-CCC
1 ATAAATCC-AAACTCA-AAACTCTAATCCC
50150828 ATAAACTCCAAACTCAAAACTCTAATCCC
1 ATAAA-TCCAAACTCAAAACTCTAATCCC
50150857 A-AAAT
1 ATAAAT
50150862 AATAAACATT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
27 1 0.03
28 21 0.68
29 9 0.29
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.19
Consensus pattern (28 bp):
ATAAATCCAAACTCAAAACTCTAATCCC
Found at i:50151088 original size:40 final size:40
Alignment explanation
Indices: 50151030--50151107 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
50151020 AACTTTTTTA
50151030 TGGCGTTTTACGAAAAGCGCCGCTAATGCTCGATCTATAG
1 TGGCGTTTTACGAAAAGCGCCGCTAATGCTCGATCTATAG
* * *
50151070 TGGCGTTTTTC-AACAAGCGCCGCTAATTCTTGATCTAT
1 TGGCGTTTTACGAA-AAGCGCCGCTAATGCTCGATCTAT
50151108 TACGACATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 2 0.06
40 32 0.94
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (40 bp):
TGGCGTTTTACGAAAAGCGCCGCTAATGCTCGATCTATAG
Found at i:50151119 original size:40 final size:40
Alignment explanation
Indices: 50151042--50151138 Score: 106
Period size: 40 Copynumber: 2.4 Consensus size: 40
50151032 GCGTTTTACG
* * *
50151042 AAAAGCGCCGCTAATGCTCGATCTATAGTGGCGTTTTTCA
1 AAAAGCGCCGCTAATGCTCGATCTATAGCGACATTTTTCA
* * * *
50151082 ACAAGCGCCGCTAATTCTTGATCTATTA-CGACATTTTTTA
1 AAAAGCGCCGCTAATGCTCGATCTA-TAGCGACATTTTTCA
*
50151122 AAAAGCGCCACTAATGC
1 AAAAGCGCCGCTAATGC
50151139 CACTAAACCT
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
40 44 0.96
41 2 0.04
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (40 bp):
AAAAGCGCCGCTAATGCTCGATCTATAGCGACATTTTTCA
Found at i:50151226 original size:40 final size:40
Alignment explanation
Indices: 50151182--50151289 Score: 144
Period size: 40 Copynumber: 2.7 Consensus size: 40
50151172 ACTTTTTTGT
*
50151182 GGCGTTTTCCAAAAAGCGCCGCTAATGCTCGATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGC
* * * *
50151222 GGCGTTTTTCAAATATCGCCACTAATGCTCGATCTATTGC
1 GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGC
* * *
50151262 GGCATTTTTTAAAAAGCGCTGCTAATGC
1 GGCGTTTTTCAAAAAGCGCCGCTAATGC
50151290 CACTAAAGCT
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (40 bp):
GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGC
Found at i:50151379 original size:40 final size:40
Alignment explanation
Indices: 50151335--50151464 Score: 120
Period size: 40 Copynumber: 3.2 Consensus size: 40
50151325 AACTTTTTAT
* * *
50151335 GGCGTTTTCTGAAAAA-TACCGCTAATGCTCAATCTATAGC
1 GGCGTTTT-TCAAAAAGCACCGCTAATGCTCAACCTATAGC
*
50151375 GGCGTTTTTCAAAAAGCACCGCTAATGCTCGACCTATAGC
1 GGCGTTTTTCAAAAAGCACCGCTAATGCTCAACCTATAGC
** * ** * *
50151415 GATGTTTGTTTCAAAAA-CGCCGCTAATGCTTGACCTCTTGC
1 GGCG-TT-TTTCAAAAAGCACCGCTAATGCTCAACCTATAGC
50151456 GGCGTTTTT
1 GGCGTTTTT
50151465 GTCATAAACG
Statistics
Matches: 75, Mismatches: 12, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
39 9 0.12
40 33 0.44
41 24 0.32
42 9 0.12
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.32
Consensus pattern (40 bp):
GGCGTTTTTCAAAAAGCACCGCTAATGCTCAACCTATAGC
Found at i:50151400 original size:153 final size:153
Alignment explanation
Indices: 50150978--50151411 Score: 585
Period size: 151 Copynumber: 2.8 Consensus size: 153
50150968 AAAAATGCCT
50150978 CTAATGCCACTAAAGCTCAACAACAAACAAC-TCCGTTTT-CTCAACTTTTTTATGGCGTTTTAC
1 CTAATGCCACTAAAGCTCAACAACAAACAACGT--GTTTTGCTCAACTTTTTTATGGCGTTTT-C
* * * * *
50151041 GAAAAGCGCCGCTAATGCTCGATCTATAGTGGCGTTTTTCAACAAGCGCCGCTAATTCTTGATCT
63 GAAAAACGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCT
50151106 ATTACGACATTTTTTAAAAAGCGCCA
128 ATTACGACATTTTTTAAAAAGCGCCA
* * *
50151132 CTAATGCCACTAAA-C-C-TCAAC-AACAACGTTGTTTTGCTCAACTTTTTTGTGGCGTTTTCCA
1 CTAATGCCACTAAAGCTCAACAACAAACAACG-TGTTTTGCTCAACTTTTTTATGGCGTTTTCGA
* * *
50151193 AAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAATATCGCCACTAATGCTCGATCTA
65 AAAA-CGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTA
* * **
50151258 TTGCGGCATTTTTTAAAAAGCGCTG
129 TTACGACATTTTTTAAAAAGCGCCA
50151283 CTAATGCCACTAAAGCTCAACAACAAACAACGTGTTTTGCTCAAC-TTTTTATGGCGTTTTCTGA
1 CTAATGCCACTAAAGCTCAACAACAAACAACGTGTTTTGCTCAACTTTTTTATGGCGTTTTC-GA
** * * *
50151347 AAAATACCGCTAATGCTCAATCTATAGCGGCGTTTTTCAAAAAGCACCGCTAATGCTCGACCTAT
65 AAAACGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTAT
50151412 AGCGATGTTT
Statistics
Matches: 245, Mismatches: 26, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
150 16 0.07
151 113 0.46
152 3 0.01
153 70 0.29
154 36 0.15
155 7 0.03
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.31
Consensus pattern (153 bp):
CTAATGCCACTAAAGCTCAACAACAAACAACGTGTTTTGCTCAACTTTTTTATGGCGTTTTCGAA
AAACGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATT
ACGACATTTTTTAAAAAGCGCCA
Found at i:50151474 original size:41 final size:41
Alignment explanation
Indices: 50151353--50151480 Score: 127
Period size: 41 Copynumber: 3.1 Consensus size: 41
50151343 CTGAAAAATA
* * * *
50151353 CCGCTAATGCTCAATCTATAGCGGCG-TT-TTTCAAAAAGCA
1 CCGCTAATGCTCGACCTATAGCGACGTTTGTTTCAAAAA-CG
*
50151393 CCGCTAATGCTCGACCTATAGCGATGTTTGTTTCAAAAACG
1 CCGCTAATGCTCGACCTATAGCGACGTTTGTTTCAAAAACG
* * * * *
50151434 CCGCTAATGCTTGACCTCTTGCGGCGTTT-TTGTCATAAACG
1 CCGCTAATGCTCGACCTATAGCGACGTTTGTT-TCAAAAACG
50151475 CCGCTA
1 CCGCTA
50151481 TAGCTCTAAC
Statistics
Matches: 74, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
40 24 0.32
41 41 0.55
42 9 0.12
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (41 bp):
CCGCTAATGCTCGACCTATAGCGACGTTTGTTTCAAAAACG
Found at i:50155137 original size:25 final size:24
Alignment explanation
Indices: 50155109--50155170 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
50155099 CACTTTCACA
50155109 TATTTTAATAATTTTT-ATTATTTAT
1 TATTTTAATAATTTTTAATT-TTT-T
**
50155134 TATTTTCTTATATTTTTAATTTTTT
1 TATTTTAATA-ATTTTTAATTTTTT
50155159 TATTTTCAATAA
1 TATTTT-AATAA
50155171 AAGTATCATA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
25 16 0.53
26 11 0.37
27 3 0.10
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (24 bp):
TATTTTAATAATTTTTAATTTTTT
Found at i:50157735 original size:3 final size:3
Alignment explanation
Indices: 50157727--50157769 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
50157717 GAAAACAATT
* *
50157727 ATA ATA ATA ATA ATA ACA ATA ATA ATA GTA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
50157770 AATTGCTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:50159616 original size:82 final size:84
Alignment explanation
Indices: 50159511--50159976 Score: 336
Period size: 90 Copynumber: 5.4 Consensus size: 84
50159501 AGACTTGATG
* * * * * * *
50159511 CGATCTACTCTGCTGTAACCTCAGAGAGATAAGATC-C-TTTAATCCGCTCCACTGTAACTTCGG
1 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTTTTAATCTGCTCCACTGTAACCTCAG
* *
50159574 GGAGATAGGATAGTG-TCTT
66 GGAGATAAGAT-CTGATCTT
50159593 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTTATTTTAATCTGCTCCACTGTAACCT
1 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTC---TTTTAATCTGCTCCACTGTAACCT
50159658 CAGGGAGATAAGATCTGAAATTCTT
63 CAGGGAGATAAGATCTG--A-TCTT
* * * *
50159683 TGGTCTGTTCCACTGTAATCTCAGGGAGATAAGATCTCTTATTTTAATCTGCTCCACTGTAACCT
1 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTC---TTTTAATCTGCTCCACTGTAACCT
50159748 CAGGGAGATAAGATCTGAAATTCTT
63 CAGGGAGATAAGATCTG--A-TCTT
* * * * * ** * * * * *
50159773 TGGTCTGTTCCACTGTAATCTCAGGGAGATAAGACCTGATGTGATCTTCTCTACTGTAACTTCAG
1 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTTTTAATCTGCTCCACTGTAACCTCAG
*
50159838 AGAGATAAGATC----CTT
66 GGAGATAAGATCTGATCTT
** * ** * * * * *
50159853 TAATCCGCTCCATTGTAATCTCAAGGAGATAGGAT-TACTATCCTTGATCTGCTCCGCTGTAATC
1 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT-CT-T--TTAATCTGCTCCACTGTAACC
50159917 TCAGGGAGATAAGATCTGAAATTCTT
62 TCAGGGAGATAAGATCTG--A-TCTT
* * * *
50159943 TGGTCTGTTCCACTGTAATCTCAGGGAGATAAGA
1 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
50159977 CCTGTATAAT
Statistics
Matches: 318, Mismatches: 46, Indels: 32
0.80 0.12 0.08
Matches are distributed among these distances:
79 1 0.00
80 30 0.09
81 1 0.00
82 32 0.10
83 31 0.10
86 2 0.01
87 65 0.20
90 156 0.49
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (84 bp):
CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTTTTAATCTGCTCCACTGTAACCTCAG
GGAGATAAGATCTGATCTT
Found at i:50159722 original size:90 final size:90
Alignment explanation
Indices: 50159596--50159976 Score: 480
Period size: 90 Copynumber: 4.3 Consensus size: 90
50159586 GTGTCTTCGA
* *
50159596 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTTATTTTAATCTGCTCCACTGTAACCTCAG
1 TCTGTTCCACTGTAATCTCAGGGAGATAAGATCTCTTATTTTAATCTGCTCCACTGTAACCTCAG
50159661 GGAGATAAGATCTGAAATTCTTTGG
66 GGAGATAAGATCTGAAATTCTTTGG
50159686 TCTGTTCCACTGTAATCTCAGGGAGATAAGATCTCTTATTTTAATCTGCTCCACTGTAACCTCAG
1 TCTGTTCCACTGTAATCTCAGGGAGATAAGATCTCTTATTTTAATCTGCTCCACTGTAACCTCAG
50159751 GGAGATAAGATCTGAAATTCTTTGG
66 GGAGATAAGATCTGAAATTCTTTGG
* * * * * *
50159776 TCTGTTCCACTGTAATCTCAGGGAGATAAGA-C-CTGA-TGTGATCTTCTCTACTGTAACTTCAG
1 TCTGTTCCACTGTAATCTCAGGGAGATAAGATCTCTTATTTTAATCTGCTCCACTGTAACCTCAG
* **
50159838 AGAGATAAGATC-------CTTTAA
66 GGAGATAAGATCTGAAATTCTTTGG
* * * * * * * * *
50159856 TCCGCTCCATTGTAATCTCAAGGAGATAGGAT-TAC-TATCCTTGATCTGCTCCGCTGTAATCTC
1 TCTGTTCCACTGTAATCTCAGGGAGATAAGATCT-CTTAT-TTTAATCTGCTCCACTGTAACCTC
50159919 AGGGAGATAAGATCTGAAATTCTTTGG
64 AGGGAGATAAGATCTGAAATTCTTTGG
50159946 TCTGTTCCACTGTAATCTCAGGGAGATAAGA
1 TCTGTTCCACTGTAATCTCAGGGAGATAAGA
50159977 CCTGTATAAT
Statistics
Matches: 247, Mismatches: 32, Indels: 24
0.82 0.11 0.08
Matches are distributed among these distances:
80 30 0.12
81 1 0.00
82 1 0.00
83 30 0.12
87 32 0.13
88 3 0.01
89 1 0.00
90 149 0.60
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (90 bp):
TCTGTTCCACTGTAATCTCAGGGAGATAAGATCTCTTATTTTAATCTGCTCCACTGTAACCTCAG
GGAGATAAGATCTGAAATTCTTTGG
Found at i:50169021 original size:41 final size:42
Alignment explanation
Indices: 50168976--50169068 Score: 170
Period size: 41 Copynumber: 2.2 Consensus size: 42
50168966 ACTAGTAGAC
50168976 TCTTTCCCAAGGCGACTTCTCGAGCCCGAGTATCCTGAAA-T
1 TCTTTCCCAAGGCGACTTCTCGAGCCCGAGTATCCTGAAATT
50169017 TCTTTCCCAAGGCGACTTCTCGAGCCCGAGTATCCTGAAATT
1 TCTTTCCCAAGGCGACTTCTCGAGCCCGAGTATCCTGAAATT
50169059 TCTTTTCCCA
1 TC-TTTCCCA
50169069 CTGATTAGCT
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
41 40 0.80
42 3 0.06
43 7 0.14
ACGTcount: A:0.20, C:0.32, G:0.17, T:0.30
Consensus pattern (42 bp):
TCTTTCCCAAGGCGACTTCTCGAGCCCGAGTATCCTGAAATT
Found at i:50172407 original size:20 final size:20
Alignment explanation
Indices: 50172382--50172428 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
50172372 AATAAGAAAG
50172382 ATATAAATAATA-TCAATAT-A
1 ATATAAAT-ATAGT-AATATCA
50172402 ATATAAATATAGTAATATCA
1 ATATAAATATAGTAATATCA
50172422 ATATAAA
1 ATATAAA
50172429 AACAAATATC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (20 bp):
ATATAAATATAGTAATATCA
Found at i:50178310 original size:87 final size:87
Alignment explanation
Indices: 50178152--50178311 Score: 216
Period size: 87 Copynumber: 1.8 Consensus size: 87
50178142 ACGAGCCACC
** * *
50178152 AGAAATACAGATAAACTGCCAATACAATTGAGGTAAACTGCCAATAATAGATTGTAAACAAGCTG
1 AGAAATACAGATAAACTGCCAATACAATTGAGGTAAACAACCAATAAGAGATTGCAAACAAGCTG
50178217 TTGATAATGTGGACGAGGCCTT
66 TTGATAATGTGGACGAGGCCTT
* * * *
50178239 AGAAATACAGATAAACTGTCAATATAATT-ACGGTAAACAACCAATAAGAGATTGCAGACGAGCT
1 AGAAATACAGATAAACTGCCAATACAATTGA-GGTAAACAACCAATAAGAGATTGCAAACAAGCT
50178303 -TTCGATAAT
65 GTT-GATAAT
50178312 TTTGTGGGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
86 3 0.05
87 60 0.95
ACGTcount: A:0.42, C:0.15, G:0.19, T:0.24
Consensus pattern (87 bp):
AGAAATACAGATAAACTGCCAATACAATTGAGGTAAACAACCAATAAGAGATTGCAAACAAGCTG
TTGATAATGTGGACGAGGCCTT
Found at i:50187523 original size:45 final size:45
Alignment explanation
Indices: 50187469--50187650 Score: 242
Period size: 45 Copynumber: 4.0 Consensus size: 45
50187459 AAGTAGCAGC
*
50187469 AAATGTGCACACATATGTGGCATTTTACTCAATAAAAA-AATAGCA
1 AAATGTGCACACATATGTGGCA-TTTACTCAACAAAAATAATAGCA
* * * *
50187514 AAATGTGCACACATATGTGACATTTACGCAACAAAAATAGTACCA
1 AAATGTGCACACATATGTGGCATTTACTCAACAAAAATAATAGCA
50187559 AAATGTGCACACATATGTGGCATTTACTCAACAAAAATAGA-AGCA
1 AAATGTGCACACATATGTGGCATTTACTCAACAAAAATA-ATAGCA
* * * * *
50187604 AAATGTGCACACATATGCGACATTCACTCAACAAAAACAACAGCA
1 AAATGTGCACACATATGTGGCATTTACTCAACAAAAATAATAGCA
50187649 AA
1 AA
50187651 TGTTCATTAC
Statistics
Matches: 121, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
44 14 0.12
45 107 0.88
ACGTcount: A:0.46, C:0.20, G:0.13, T:0.21
Consensus pattern (45 bp):
AAATGTGCACACATATGTGGCATTTACTCAACAAAAATAATAGCA
Found at i:50187572 original size:90 final size:90
Alignment explanation
Indices: 50187469--50187640 Score: 276
Period size: 90 Copynumber: 1.9 Consensus size: 90
50187459 AAGTAGCAGC
* *
50187469 AAATGTGCACACATATGTGGCATTTTACTCAATAAAAA-A-ATAGCAAAATGTGCACACATATGT
1 AAATGTGCACACATATGTGGCA-TTTACTCAACAAAAATAGA-AGCAAAATGTGCACACATATGC
*
50187532 GACATTTACGCAACAAAAATAGTACCA
64 GACATTCACGCAACAAAAATAGTACCA
50187559 AAATGTGCACACATATGTGGCATTTACTCAACAAAAATAGAAGCAAAATGTGCACACATATGCGA
1 AAATGTGCACACATATGTGGCATTTACTCAACAAAAATAGAAGCAAAATGTGCACACATATGCGA
*
50187624 CATTCACTCAACAAAAA
66 CATTCACGCAACAAAAA
50187641 CAACAGCAAA
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
89 14 0.18
90 61 0.80
91 1 0.01
ACGTcount: A:0.45, C:0.19, G:0.13, T:0.23
Consensus pattern (90 bp):
AAATGTGCACACATATGTGGCATTTACTCAACAAAAATAGAAGCAAAATGTGCACACATATGCGA
CATTCACGCAACAAAAATAGTACCA
Found at i:50189294 original size:20 final size:20
Alignment explanation
Indices: 50189266--50189309 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
50189256 CATATTTTCT
*
50189266 CTCATGTTTCTCCATTCTTG
1 CTCACGTTTCTCCATTCTTG
*
50189286 CTCACGTTTCTCTATTCTTG
1 CTCACGTTTCTCCATTCTTG
50189306 CTCA
1 CTCA
50189310 TGCTTTTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.11, C:0.32, G:0.09, T:0.48
Consensus pattern (20 bp):
CTCACGTTTCTCCATTCTTG
Found at i:50189708 original size:16 final size:16
Alignment explanation
Indices: 50189687--50189718 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
50189677 GTGTGTGTGT
50189687 GTGCGTGAGTACGTGC
1 GTGCGTGAGTACGTGC
*
50189703 GTGCGTGCGTACGTGC
1 GTGCGTGAGTACGTGC
50189719 ATGTGTATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.22, G:0.44, T:0.25
Consensus pattern (16 bp):
GTGCGTGAGTACGTGC
Found at i:50197491 original size:37 final size:37
Alignment explanation
Indices: 50197443--50197520 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
50197433 TACTTTAGGG
50197443 TGCATGCCACCATATAATCACATCTTACACTAGATCA
1 TGCATGCCACCATATAATCACATCTTACACTAGATCA
50197480 TGCATGCCACCATATAATCACATCTTACACTAGATCA
1 TGCATGCCACCATATAATCACATCTTACACTAGATCA
50197517 TGCA
1 TGCA
50197521 AAGAGGACTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.35, C:0.29, G:0.09, T:0.27
Consensus pattern (37 bp):
TGCATGCCACCATATAATCACATCTTACACTAGATCA
Found at i:50197855 original size:34 final size:34
Alignment explanation
Indices: 50197777--50197864 Score: 97
Period size: 33 Copynumber: 2.6 Consensus size: 34
50197767 CGAGTGAGAT
* **
50197777 AGGGTTTGGGGAAAAGCAAAAGGAAAAAAGTTTTTA
1 AGGGTTTGGGG-AAAGTAAAAGGAAAAAAG-TTAAA
*
50197813 GGGGTTTGGGGAAAGTAAAAGGAAAAAA-TTAAA
1 AGGGTTTGGGGAAAGTAAAAGGAAAAAAGTTAAA
* *
50197846 AGGGTTTTGGAAAAGTAAA
1 AGGGTTTGGGGAAAGTAAA
50197865 TGTTTTAGGG
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
33 19 0.42
35 16 0.36
36 10 0.22
ACGTcount: A:0.45, C:0.01, G:0.32, T:0.22
Consensus pattern (34 bp):
AGGGTTTGGGGAAAGTAAAAGGAAAAAAGTTAAA
Found at i:50197878 original size:53 final size:54
Alignment explanation
Indices: 50197820--50197940 Score: 158
Period size: 54 Copynumber: 2.3 Consensus size: 54
50197810 TTAGGGGTTT
*
50197820 GGGGAAAGTAAAAGGAAAAAA-TTAAA-AGGGTTTTGGAAAAGTA-AATGTTTTAG
1 GGGGAAAGTAAAAGGAAAAAAGTTAAAGA-GGTTTGGGAAAAGTACAAT-TTTTAG
*** *
50197873 GGGGAAAGTAAAAGGAAAAAAGTTTTGGAGGTTTGGGGAAAGTACAATTTTTAG
1 GGGGAAAGTAAAAGGAAAAAAGTTAAAGAGGTTTGGGAAAAGTACAATTTTTAG
50197927 GGGGAAAGTAAAAG
1 GGGGAAAGTAAAAG
50197941 TGTTTGAAGA
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
53 21 0.35
54 35 0.58
55 4 0.07
ACGTcount: A:0.44, C:0.01, G:0.32, T:0.23
Consensus pattern (54 bp):
GGGGAAAGTAAAAGGAAAAAAGTTAAAGAGGTTTGGGAAAAGTACAATTTTTAG
Found at i:50199019 original size:23 final size:21
Alignment explanation
Indices: 50198993--50199034 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
50198983 TTTTGTCCTA
*
50198993 CTTTTATTTTCAAGAATTTAATC
1 CTTTTAATTTC-AG-ATTTAATC
50199016 CTTTTAATTTCAGATTTAA
1 CTTTTAATTTCAGATTTAA
50199035 AATTGTAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 2 0.11
23 10 0.56
ACGTcount: A:0.31, C:0.12, G:0.05, T:0.52
Consensus pattern (21 bp):
CTTTTAATTTCAGATTTAATC
Found at i:50205741 original size:28 final size:27
Alignment explanation
Indices: 50205684--50205743 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
50205674 AAAAGGGTAC
* *
50205684 AAAATATATACATGTACATATATAAAA
1 AAAATATATACATATACATAGATAAAA
* *
50205711 AAAATTATATACATATATATAGATTATAA
1 AAAA-TATATACATATACATAGA-TAAAA
50205740 AAAA
1 AAAA
50205744 NAAATTATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 4 0.15
28 15 0.56
29 8 0.30
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (27 bp):
AAAATATATACATATACATAGATAAAA
Found at i:50207244 original size:16 final size:16
Alignment explanation
Indices: 50207213--50207249 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
50207203 ATGTGAAGAA
50207213 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
50207229 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
50207245 TATTA
1 TATTA
50207250 AAATAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:50207309 original size:16 final size:16
Alignment explanation
Indices: 50207263--50207312 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
50207253 TAAAATAAAA
50207263 ATATTAAATAATTTATT
1 ATATT-AATAATTTATT
**
50207280 A-A--AATAATAAATT
1 ATATTAATAATTTATT
50207293 ATATTAATAATTTATT
1 ATATTAATAATTTATT
50207309 ATAT
1 ATAT
50207313 GATTAAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
13 10 0.38
14 1 0.04
16 14 0.54
17 1 0.04
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATTAATAATTTATT
Found at i:50207320 original size:29 final size:30
Alignment explanation
Indices: 50207244--50207309 Score: 91
Period size: 29 Copynumber: 2.2 Consensus size: 30
50207234 TTAAAATTTA
*
50207244 TTATTAAAATAAAATAAA-AATATTAAATAAT
1 TTATTAAAAT--AATAAATTATATTAAATAAT
50207275 TTATTAAAATAATAAATTATATT-AATAAT
1 TTATTAAAATAATAAATTATATTAAATAAT
50207304 TTATTA
1 TTATTA
50207310 TATGATTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
29 18 0.55
30 5 0.15
31 10 0.30
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (30 bp):
TTATTAAAATAATAAATTATATTAAATAAT
Found at i:50207329 original size:26 final size:26
Alignment explanation
Indices: 50207253--50207330 Score: 79
Period size: 29 Copynumber: 2.9 Consensus size: 26
50207243 ATTATTAAAA
50207253 TAAAATAA-AAATATTAAATAATTTAT
1 TAAAATAATAAATA-TAAATAATTTAT
50207279 TAAAATAATAAATTATATTAATAATTTAT
1 TAAAATAATAAA-TATA--AATAATTTAT
* *
50207308 T-ATATGATTAAATATAAATAATT
1 TAAAAT-AATAAATATAAATAATT
50207331 AAATATGTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
26 15 0.33
27 5 0.11
28 9 0.20
29 16 0.36
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.42
Consensus pattern (26 bp):
TAAAATAATAAATATAAATAATTTAT
Found at i:50207376 original size:13 final size:14
Alignment explanation
Indices: 50207356--50207387 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
50207346 ATAATATGAA
50207356 AATA-TAATATTTT
1 AATATTAATATTTT
50207369 -ATATTAATATTTT
1 AATATTAATATTTT
50207382 AATATT
1 AATATT
50207388 TTTAAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 3 0.18
13 9 0.53
14 5 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
AATATTAATATTTT
Found at i:50209158 original size:29 final size:27
Alignment explanation
Indices: 50209125--50209179 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 27
50209115 TAGAATCCAA
50209125 TCTTTATT-TTTTTTATTTTAAAAATTTAT
1 TCTTT-TTATTTTTTA-TTT-AAAATTTAT
50209154 TCTTTTTATTTTTTATTTAAAATTTA
1 TCTTTTTATTTTTTATTTAAAATTTA
50209180 ATTTTAATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 8 0.32
28 5 0.20
29 12 0.48
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (27 bp):
TCTTTTTATTTTTTATTTAAAATTTAT
Found at i:50217704 original size:28 final size:27
Alignment explanation
Indices: 50217672--50217724 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
50217662 CATTGGTAGA
*
50217672 TGAACTAACAAATTAATAAAGAAATTGG
1 TGAACCAACAAATTAATAAA-AAATTGG
*
50217700 TGAACCAACAAATTAATTAAAAATT
1 TGAACCAACAAATTAATAAAAAATT
50217725 AGTGTGCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.55, C:0.09, G:0.09, T:0.26
Consensus pattern (27 bp):
TGAACCAACAAATTAATAAAAAATTGG
Found at i:50221380 original size:31 final size:31
Alignment explanation
Indices: 50221342--50221402 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
50221332 GGGATGAACA
*
50221342 TGTTGGGTCCGTCTCCTGTACTGGGTACAAC
1 TGTTGGGTCCGTCTCCTGTACTGAGTACAAC
50221373 TGTTGGGTCCGTCTCCTGTACTGAGTACAA
1 TGTTGGGTCCGTCTCCTGTACTGAGTACAA
50221403 TTATATGTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.15, C:0.25, G:0.28, T:0.33
Consensus pattern (31 bp):
TGTTGGGTCCGTCTCCTGTACTGAGTACAAC
Found at i:50246399 original size:16 final size:15
Alignment explanation
Indices: 50246365--50246403 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
50246355 AAAATTATGT
50246365 TTTCCATCCTTCTAA
1 TTTCCATCCTTCTAA
50246380 TTTCCTATCTCTTC-AA
1 TTTCC-ATC-CTTCTAA
50246396 TTTCCATC
1 TTTCCATC
50246404 GTACCAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 8 0.36
16 10 0.45
17 4 0.18
ACGTcount: A:0.18, C:0.33, G:0.00, T:0.49
Consensus pattern (15 bp):
TTTCCATCCTTCTAA
Found at i:50250990 original size:3 final size:3
Alignment explanation
Indices: 50250982--50251017 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
50250972 CAACCGCTTG
* *
50250982 AGA AGA AGA AGC AGA AGA GGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
50251018 GAGTTGAGGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.61, C:0.03, G:0.36, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:50252603 original size:17 final size:17
Alignment explanation
Indices: 50252581--50252622 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
50252571 AAATTTTCTT
50252581 TTCTTCTTCTCCTCCT-C
1 TTCTTCTTCTCCT-CTGC
*
50252598 TTCTTCTTCTTCTCTGC
1 TTCTTCTTCTCCTCTGC
50252615 TTCTTCTT
1 TTCTTCTT
50252623 TTTCTTTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 2 0.09
17 21 0.91
ACGTcount: A:0.00, C:0.38, G:0.02, T:0.60
Consensus pattern (17 bp):
TTCTTCTTCTCCTCTGC
Found at i:50252619 original size:14 final size:14
Alignment explanation
Indices: 50252576--50252622 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
50252566 TCTAGAAATT
*
50252576 TTCTTTTCTTCTTC
1 TTCTTCTCTTCTTC
* *
50252590 TCCTCCTCTTCTTC
1 TTCTTCTCTTCTTC
*
50252604 TTCTTCTCTGCTTC
1 TTCTTCTCTTCTTC
50252618 TTCTT
1 TTCTT
50252623 TTTCTTTTAC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.00, C:0.36, G:0.02, T:0.62
Consensus pattern (14 bp):
TTCTTCTCTTCTTC
Found at i:50252619 original size:20 final size:20
Alignment explanation
Indices: 50252576--50252628 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
50252566 TCTAGAAATT
50252576 TTCTT-TTCTTCTTCTCCTC
1 TTCTTCTTCTTCTTCTCCTC
*
50252595 CTCTTCTTCTTCTTCT-CTGC
1 TTCTTCTTCTTCTTCTCCT-C
*
50252615 TTCTTCTTTTTCTT
1 TTCTTCTTCTTCTT
50252629 TTACAGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 6 0.21
20 23 0.79
ACGTcount: A:0.00, C:0.34, G:0.02, T:0.64
Consensus pattern (20 bp):
TTCTTCTTCTTCTTCTCCTC
Found at i:50253196 original size:60 final size:60
Alignment explanation
Indices: 50253132--50253245 Score: 160
Period size: 60 Copynumber: 1.9 Consensus size: 60
50253122 ATACCTATTT
* *
50253132 TTTTAAGGATT-TACAAATATTTCTAA-GTTGTTACCAAAAATTCTAAAAGTTTATTGAAAA
1 TTTTAAGG-TTATACAAAAATTTCTAATGAT-TTACCAAAAATTCTAAAAGTTTATTGAAAA
* *
50253192 TTTTAAGGTTATACAAAAATTTCTAATGATTTACCAATAATTCTAAGAGTTTAT
1 TTTTAAGGTTATACAAAAATTTCTAATGATTTACCAAAAATTCTAAAAGTTTAT
50253246 CAGTATTTCT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
59 2 0.04
60 44 0.92
61 2 0.04
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (60 bp):
TTTTAAGGTTATACAAAAATTTCTAATGATTTACCAAAAATTCTAAAAGTTTATTGAAAA
Found at i:50253255 original size:20 final size:20
Alignment explanation
Indices: 50253210--50253263 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
50253200 TTATACAAAA
50253210 ATTTCTAATGATTTACCAAT
1 ATTTCTAATGATTTACCAAT
* * *
50253230 AATTCTAA-GAGTTTATCAGT
1 ATTTCTAATGA-TTTACCAAT
*
50253250 ATTTCTAAAGATTT
1 ATTTCTAATGATTT
50253264 CCTTAGTATC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 2 0.07
20 24 0.86
21 2 0.07
ACGTcount: A:0.35, C:0.11, G:0.09, T:0.44
Consensus pattern (20 bp):
ATTTCTAATGATTTACCAAT
Found at i:50253347 original size:40 final size:41
Alignment explanation
Indices: 50253303--50253397 Score: 117
Period size: 40 Copynumber: 2.4 Consensus size: 41
50253293 CATTTTGACA
** *
50253303 TACCAAAATTTCTAAAGGTTTCT-C-ACTATTTCTAA-GGATT
1 TACCAAAATTTCTAAAGGTTT-TACAAAAAATT-TAATGGATT
50253343 TACCAAAATTTCT-AAGGTTTTACAAAAAATTTAATGGATT
1 TACCAAAATTTCTAAAGGTTTTACAAAAAATTTAATGGATT
50253383 TACCAAAATTTCTAA
1 TACCAAAATTTCTAA
50253398 GGATAATTTG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
38 1 0.02
39 11 0.23
40 35 0.73
41 1 0.02
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.38
Consensus pattern (41 bp):
TACCAAAATTTCTAAAGGTTTTACAAAAAATTTAATGGATT
Found at i:50253373 original size:21 final size:20
Alignment explanation
Indices: 50253303--50253401 Score: 105
Period size: 20 Copynumber: 5.0 Consensus size: 20
50253293 CATTTTGACA
50253303 TACCAAAATTTCTAAAGG-TT
1 TACCAAAATTTCT-AAGGATT
**
50253323 T-CTCACTATTTCTAAGGATT
1 TAC-CAAAATTTCTAAGGATT
*
50253343 TACCAAAATTTCTAAGGTTT
1 TACCAAAATTTCTAAGGATT
* *
50253363 TACAAAAAATT-TAATGGATT
1 TACCAAAATTTCTAA-GGATT
50253383 TACCAAAATTTCTAAGGAT
1 TACCAAAATTTCTAAGGAT
50253402 AATTTGGTAT
Statistics
Matches: 64, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
19 8 0.12
20 52 0.81
21 4 0.06
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.37
Consensus pattern (20 bp):
TACCAAAATTTCTAAGGATT
Found at i:50253429 original size:20 final size:20
Alignment explanation
Indices: 50253404--50253450 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
50253394 CTAAGGATAA
* **
50253404 TTTGGTATAACCTTAGATGT
1 TTTGGTATAACCTAAGAAAT
50253424 TTTGGTATAACCTAAGAAAT
1 TTTGGTATAACCTAAGAAAT
50253444 TTTGGTA
1 TTTGGTA
50253451 GATCCTTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.43
Consensus pattern (20 bp):
TTTGGTATAACCTAAGAAAT
Found at i:50253555 original size:20 final size:20
Alignment explanation
Indices: 50253513--50253759 Score: 159
Period size: 20 Copynumber: 12.6 Consensus size: 20
50253503 GACACTAGGG
* *
50253513 AAATCTTTAGAAATATTT-TT
1 AAATCCTTAGAAAT-TTTGGT
50253533 AAATCCTTAGAAATTTTGGT
1 AAATCCTTAGAAATTTTGGT
* * *
50253553 AAAGCCTT-CAAATTCTGGT
1 AAATCCTTAGAAATTTTGGT
* *
50253572 AAATCTTTAGATATTTTGGT
1 AAATCCTTAGAAATTTTGGT
*
50253592 ATAA-CCTTAGGAATTTTGGT
1 A-AATCCTTAGAAATTTTGGT
* * *
50253612 AAATTCTTAGATATTTTGAT
1 AAATCCTTAGAAATTTTGGT
* * * *
50253632 ATAGCTTTAGAAATTTTGAT
1 AAATCCTTAGAAATTTTGGT
50253652 AAAAT-CTTAGAAA--TTGGT
1 -AAATCCTTAGAAATTTTGGT
* **
50253670 AAAACCTTAGAAATTTTAAT
1 AAATCCTTAGAAATTTTGGT
* * * *
50253690 GAAGCCTTAAAAACTTTGG-
1 AAATCCTTAGAAATTTTGGT
** * *
50253709 AAATATTTAGATATTTTGGC
1 AAATCCTTAGAAATTTTGGT
*
50253729 ATAA-CTTTAGAAATTTTGGT
1 A-AATCCTTAGAAATTTTGGT
50253749 AAATCCTTAGA
1 AAATCCTTAGA
50253760 TTTTTTTTGT
Statistics
Matches: 170, Mismatches: 46, Indels: 22
0.71 0.19 0.09
Matches are distributed among these distances:
17 3 0.02
18 12 0.07
19 34 0.20
20 115 0.68
21 6 0.04
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (20 bp):
AAATCCTTAGAAATTTTGGT
Found at i:50255740 original size:18 final size:18
Alignment explanation
Indices: 50255719--50255758 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
50255709 TTTTTAAATA
50255719 TTTTATA-TTTTAATATTT
1 TTTTATACTTTT-ATATTT
*
50255737 TTTTATACTTTTGTATTT
1 TTTTATACTTTTATATTT
50255755 TTTT
1 TTTT
50255759 TCTAAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.75
Consensus pattern (18 bp):
TTTTATACTTTTATATTT
Found at i:50255998 original size:22 final size:20
Alignment explanation
Indices: 50255980--50256026 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
50255970 TTTTTTTTCC
50255980 TATACTTTATAATAATTTTTA
1 TATA-TTTATAATAATTTTTA
*
50256001 TATATTTGTAATAATTTTT-
1 TATATTTATAATAATTTTTA
50256020 TATATTT
1 TATATTT
50256027 TCTATTTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 7 0.28
20 14 0.56
21 4 0.16
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (20 bp):
TATATTTATAATAATTTTTA
Found at i:50256004 original size:21 final size:21
Alignment explanation
Indices: 50255963--50256024 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
50255953 TTTATGATTT
* *
50255963 TTTATAAT-TTTTTTTCCTATA
1 TTTATAATAATTTTTT-ATATA
50255984 CTTTATAATAA-TTTTTATATA
1 -TTTATAATAATTTTTTATATA
*
50256005 TTTGTAATAATTTTTTATAT
1 TTTATAATAATTTTTTATAT
50256025 TTTCTATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
20 9 0.26
21 13 0.37
22 13 0.37
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.63
Consensus pattern (21 bp):
TTTATAATAATTTTTTATATA
Found at i:50260635 original size:38 final size:38
Alignment explanation
Indices: 50260584--50260659 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
50260574 TCTGAAGTAA
50260584 TCATGTATGACACCCAAATTCGAGAATTATATGGAAAC
1 TCATGTATGACACCCAAATTCGAGAATTATATGGAAAC
*
50260622 TCATGTATGACACCCAAATTTGAGAATTATATGGAAAC
1 TCATGTATGACACCCAAATTCGAGAATTATATGGAAAC
50260660 GAGCATAAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (38 bp):
TCATGTATGACACCCAAATTCGAGAATTATATGGAAAC
Found at i:50261185 original size:17 final size:17
Alignment explanation
Indices: 50261163--50261215 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
50261153 AAAGAATTGA
50261163 ACATATCCATGTAGGAC
1 ACATATCCATGTAGGAC
* *
50261180 ACATAT--A-GAATTGA-
1 ACATATCCATGTA-GGAC
50261194 ACATATCCATGTAGGAC
1 ACATATCCATGTAGGAC
50261211 ACATA
1 ACATA
50261216 CATGTATCTG
Statistics
Matches: 27, Mismatches: 4, Indels: 10
0.66 0.10 0.24
Matches are distributed among these distances:
14 8 0.30
15 3 0.11
16 3 0.11
17 13 0.48
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.25
Consensus pattern (17 bp):
ACATATCCATGTAGGAC
Found at i:50261193 original size:31 final size:31
Alignment explanation
Indices: 50261155--50261215 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
50261145 AAAACTTTAA
50261155 AGAATTGAACATATCCATGTAGGACACATAT
1 AGAATTGAACATATCCATGTAGGACACATAT
50261186 AGAATTGAACATATCCATGTAGGACACATA
1 AGAATTGAACATATCCATGTAGGACACATA
50261216 CATGTATCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.25
Consensus pattern (31 bp):
AGAATTGAACATATCCATGTAGGACACATAT
Found at i:50265257 original size:23 final size:23
Alignment explanation
Indices: 50265206--50265260 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
50265196 ACCACACACC
*
50265206 TCCGTACGTGCCACGTTCGCGCC
1 TCCGTACGTGCCACGTTCGCGCA
50265229 TCCGTACGTGCCACG-TC-CGCAA
1 TCCGTACGTGCCACGTTCGCGC-A
50265251 TCTCGTACGT
1 TC-CGTACGT
50265261 TGTACCTGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 3 0.10
22 4 0.14
23 22 0.76
ACGTcount: A:0.13, C:0.40, G:0.24, T:0.24
Consensus pattern (23 bp):
TCCGTACGTGCCACGTTCGCGCA
Found at i:50265338 original size:14 final size:13
Alignment explanation
Indices: 50265315--50265344 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
50265305 TGTATTTTTA
50265315 TTTCTTTTTTATT
1 TTTCTTTTTTATT
50265328 TTTCGTTTTTTATT
1 TTTC-TTTTTTATT
50265342 TTT
1 TTT
50265345 AGCCTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.07, C:0.07, G:0.03, T:0.83
Consensus pattern (13 bp):
TTTCTTTTTTATT
Found at i:50266348 original size:12 final size:12
Alignment explanation
Indices: 50266320--50266389 Score: 52
Period size: 12 Copynumber: 5.8 Consensus size: 12
50266310 TATTAATTAG
50266320 ATTATTAATTAAT
1 ATTATT-ATTAAT
*
50266333 -TTATTATTATT
1 ATTATTATTAAT
* * **
50266344 ATTATCAGTGTT
1 ATTATTATTAAT
*
50266356 ATTATTACTAAT
1 ATTATTATTAAT
*
50266368 ATTATTATTGAT
1 ATTATTATTAAT
*
50266380 ATTGTTATTA
1 ATTATTATTA
50266390 CACTAGTTTA
Statistics
Matches: 44, Mismatches: 12, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
11 5 0.11
12 39 0.89
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.57
Consensus pattern (12 bp):
ATTATTATTAAT
Found at i:50266678 original size:12 final size:12
Alignment explanation
Indices: 50266646--50266679 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
50266636 TTATTTCAAC
50266646 TTATATATATTA
1 TTATATATATTA
*
50266658 TCATATATATTA
1 TTATATATATTA
*
50266670 TTATTTATAT
1 TTATATATAT
50266680 CAAGTTTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATATATATTA
Found at i:50270289 original size:28 final size:28
Alignment explanation
Indices: 50270245--50270314 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
50270235 TATACATATA
*
50270245 TTATAT-ATATATGTGCATGACTTCATC
1 TTATATAATATATATGCATGACTTCATC
* * *
50270272 TTATATAATATATATGCATGTCTTTATT
1 TTATATAATATATATGCATGACTTCATC
**
50270300 TTACCTAATATATAT
1 TTATATAATATATAT
50270315 TAATGGATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 6 0.17
28 30 0.83
ACGTcount: A:0.33, C:0.11, G:0.07, T:0.49
Consensus pattern (28 bp):
TTATATAATATATATGCATGACTTCATC
Found at i:50270338 original size:5 final size:5
Alignment explanation
Indices: 50270328--50270384 Score: 114
Period size: 5 Copynumber: 11.4 Consensus size: 5
50270318 TGGATTTTGG
50270328 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
50270378 TAATA TA
1 TAATA TA
50270385 TGCATGGTTC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 52 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:50270746 original size:36 final size:36
Alignment explanation
Indices: 50270689--50270769 Score: 101
Period size: 36 Copynumber: 2.2 Consensus size: 36
50270679 TGTGAACCAT
* * *
50270689 GTTAACTTGGTGAATTATATTATTATGGCGAACTGC
1 GTTAATTTGGTGAATTATATTAATATGGCAAACTGC
*
50270725 GTTAATTTGGT-AATCTGTATTAATATGGCAAACTGC
1 GTTAATTTGGTGAAT-TATATTAATATGGCAAACTGC
*
50270761 ATTAATTTG
1 GTTAATTTG
50270770 TCAAACTGTG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
35 3 0.08
36 36 0.92
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (36 bp):
GTTAATTTGGTGAATTATATTAATATGGCAAACTGC
Found at i:50270764 original size:18 final size:18
Alignment explanation
Indices: 50270707--50270777 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 18
50270697 GGTGAATTAT
* *
50270707 ATTATTATGGCGAACTGC
1 ATTAATATGGCAAACTGC
* * * * *
50270725 GTTAATTTGGTAATCTGT
1 ATTAATATGGCAAACTGC
50270743 ATTAATATGGCAAACTGC
1 ATTAATATGGCAAACTGC
* *
50270761 ATTAATTTGTCAAACTG
1 ATTAATATGGCAAACTG
50270778 TGTATTGTGA
Statistics
Matches: 39, Mismatches: 14, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (18 bp):
ATTAATATGGCAAACTGC
Found at i:50271337 original size:23 final size:23
Alignment explanation
Indices: 50271307--50271352 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
50271297 TATCCAATAT
50271307 GTGGTGATAGAGTCCACTTATAG
1 GTGGTGATAGAGTCCACTTATAG
50271330 GTGGTGATAGAGTCCACTTATAG
1 GTGGTGATAGAGTCCACTTATAG
50271353 AGTCTCTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.30
Consensus pattern (23 bp):
GTGGTGATAGAGTCCACTTATAG
Found at i:50271443 original size:17 final size:17
Alignment explanation
Indices: 50271423--50271496 Score: 60
Period size: 17 Copynumber: 4.4 Consensus size: 17
50271413 TTCTGATAGA
*
50271423 GCATGAACTTTTATTTC
1 GCATGAACTGTTATTTC
*
50271440 GCATGAAGTGTTA-TTC
1 GCATGAACTGTTATTTC
* *
50271456 GGTATGAACTGATATTTC
1 -GCATGAACTGTTATTTC
** * *
50271474 ATATGAACTATTATTTT
1 GCATGAACTGTTATTTC
50271491 GCATGA
1 GCATGA
50271497 GTTGCATTTG
Statistics
Matches: 44, Mismatches: 11, Indels: 4
0.75 0.19 0.07
Matches are distributed among these distances:
16 3 0.07
17 38 0.86
18 3 0.07
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.42
Consensus pattern (17 bp):
GCATGAACTGTTATTTC
Found at i:50271530 original size:50 final size:51
Alignment explanation
Indices: 50271425--50271531 Score: 137
Period size: 50 Copynumber: 2.1 Consensus size: 51
50271415 CTGATAGAGC
* * *
50271425 ATGAACTTTTATTTCGCATGAAGTGTTATTCGGTATGAACTGATATTTCAT
1 ATGAACTATTATTTCGCATGAAGTGTCATTCGGTAAGAACTGATATTTCAT
* * *
50271476 ATGAACTATTATTTTGCATG-AGT-TGCATTTGGTAAGAACTGTTATTTCAT
1 ATGAACTATTATTTCGCATGAAGTGT-CATTCGGTAAGAACTGATATTTCAT
50271526 ATGAAC
1 ATGAAC
50271532 AGATGTTTAG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
49 1 0.02
50 30 0.61
51 18 0.37
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.42
Consensus pattern (51 bp):
ATGAACTATTATTTCGCATGAAGTGTCATTCGGTAAGAACTGATATTTCAT
Found at i:50274391 original size:123 final size:125
Alignment explanation
Indices: 50274171--50274451 Score: 451
Period size: 123 Copynumber: 2.3 Consensus size: 125
50274161 ATTATTTTGA
* *
50274171 TTTGACGTTTCTGGTCAAATAGTAGAAAATCG-TATCTACCAGGATGCTATTTGAGAAGAAATTG
1 TTTGACGTTTCTGATCAAATAGTATAAAATCGCTATCTACCAGGATGCTATTTGAGAAGAAATTG
* *
50274235 TGAAATCGTGCCCTCGTGGACGTGATTTTGCTACAGTTGGTCATGTAAGAAATAAA-TTT
66 TGAAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAAATTTT
* * *
50274294 TTTGATGTTTCTGATCAAATAGTATAAAATCGCT-TCTACCAGGATGCTATTTTAGAAGGAATTG
1 TTTGACGTTTCTGATCAAATAGTATAAAATCGCTATCTACCAGGATGCTATTTGAGAAGAAATTG
50274358 TGAAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAAATTTTT
66 TGAAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAAA-TTTT
* *
50274419 TTTGACGTTTCTGAACAAATAATATAAAATCGC
1 TTTGACGTTTCTGATCAAATAGTATAAAATCGC
50274452 GCCCCCGTGG
Statistics
Matches: 145, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
123 111 0.77
124 1 0.01
125 33 0.23
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.34
Consensus pattern (125 bp):
TTTGACGTTTCTGATCAAATAGTATAAAATCGCTATCTACCAGGATGCTATTTGAGAAGAAATTG
TGAAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAAATTTT
Found at i:50275691 original size:15 final size:15
Alignment explanation
Indices: 50275654--50275685 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
50275644 TACAAAGGTC
50275654 CACATACATGTGCTG
1 CACATACATGTGCTG
50275669 CACATACATGTGCTG
1 CACATACATGTGCTG
50275684 CA
1 CA
50275686 GGTACAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (15 bp):
CACATACATGTGCTG
Found at i:50277565 original size:23 final size:23
Alignment explanation
Indices: 50277539--50277645 Score: 88
Period size: 23 Copynumber: 4.2 Consensus size: 23
50277529 TTTGTTAATG
50277539 GTTAGAGTTTTTAATTAAATTAA
1 GTTAGAGTTTTTAATTAAATTAA
*
50277562 GTTAGGGTTTAGGGTTTTTAATTAAATTAGGTT
1 GTTA--G---A--GTTTTTAATTAAATTA---A
*
50277595 GTTAGGGTTTTTAATTAAATTAA
1 GTTAGAGTTTTTAATTAAATTAA
* *
50277618 GTTAGAGTTTTTAAATAAATTAG
1 GTTAGAGTTTTTAATTAAATTAA
50277641 GTTAG
1 GTTAG
50277646 GGTTAGGGTT
Statistics
Matches: 68, Mismatches: 6, Indels: 20
0.72 0.06 0.21
Matches are distributed among these distances:
23 29 0.43
25 1 0.01
26 16 0.24
28 1 0.01
30 16 0.24
31 1 0.01
33 4 0.06
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.47
Consensus pattern (23 bp):
GTTAGAGTTTTTAATTAAATTAA
Found at i:50277651 original size:29 final size:29
Alignment explanation
Indices: 50277538--50277785 Score: 354
Period size: 29 Copynumber: 8.8 Consensus size: 29
50277528 TTTTGTTAAT
* *
50277538 GGTTAGAGTTTTTAATTAAATTAAGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
50277567 GGTTTAGGGTTTTTAATTAAATTAGGTT--
1 GG-TTAGGGTTTTTAATTAAATTAGGTTAG
50277595 -GTTAGGGTTTTTAATTAAATTA----A-
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
* *
50277618 -GTTAGAGTTTTTAAATAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
50277646 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
50277675 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
*
50277704 GGTTTAGGG-TTTTAATTAAATTAGGGTAG
1 GG-TTAGGGTTTTTAATTAAATTAGGTTAG
50277733 GGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAG
50277762 GGTTTAGGGTTTTTAATTAAATTA
1 GG-TTAGGGTTTTTAATTAAATTA
50277786 AGATTTTTAT
Statistics
Matches: 200, Mismatches: 8, Indels: 21
0.87 0.03 0.09
Matches are distributed among these distances:
23 20 0.10
26 21 0.10
27 2 0.01
28 6 0.03
29 101 0.50
30 50 0.25
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.46
Consensus pattern (29 bp):
GGTTAGGGTTTTTAATTAAATTAGGTTAG
Found at i:50279003 original size:7 final size:7
Alignment explanation
Indices: 50278993--50279024 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
50278983 TTATATACAT
*
50278993 AATACAA
1 AATACTA
50279000 AATACTA
1 AATACTA
50279007 AATACTA
1 AATACTA
50279014 AATACTA
1 AATACTA
50279021 AATA
1 AATA
50279025 TCAATCCACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25
Consensus pattern (7 bp):
AATACTA
Found at i:50280014 original size:26 final size:25
Alignment explanation
Indices: 50279959--50280014 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
50279949 CTTTTATAAC
*
50279959 AAATAATAAATTAATAATTCTCTAA
1 AAATAATAAATTAAAAATTCTCTAA
50279984 AAATACATAAA-TAAAAATATCT-TAA
1 AAATA-ATAAATTAAAAAT-TCTCTAA
50280009 ATAATA
1 A-AATA
50280015 TTTAAGATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 15 0.56
26 12 0.44
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (25 bp):
AAATAATAAATTAAAAATTCTCTAA
Found at i:50280141 original size:31 final size:32
Alignment explanation
Indices: 50280105--50280171 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 32
50280095 ACCATTGATG
* *
50280105 AAAATATAAAAAAAA-TTAAAGTTATTTTTAA
1 AAAATATAAAAAAAATTTAAAATTATTTTAAA
50280136 AAAATATAAAAAAAATTTAAAATTATTTTAAA
1 AAAATATAAAAAAAATTTAAAATTATTTTAAA
50280168 AAAA
1 AAAA
50280172 GAAATTGAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
31 15 0.45
32 18 0.55
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (32 bp):
AAAATATAAAAAAAATTTAAAATTATTTTAAA
Found at i:50280230 original size:22 final size:22
Alignment explanation
Indices: 50280205--50280254 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
50280195 TAATATGGAT
50280205 TTGAGA-GATTTTTGGAAGGAAA
1 TTGAGAGGA-TTTTGGAAGGAAA
50280227 TTGAGAGGATTTTGGAAGGAAA
1 TTGAGAGGATTTTGGAAGGAAA
50280249 TTGAGA
1 TTGAGA
50280255 TAGGATTTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 25 0.93
23 2 0.07
ACGTcount: A:0.36, C:0.00, G:0.34, T:0.30
Consensus pattern (22 bp):
TTGAGAGGATTTTGGAAGGAAA
Found at i:50289255 original size:20 final size:20
Alignment explanation
Indices: 50289230--50289267 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
50289220 ACTCCCATCA
50289230 GTAGTAATAGTAAATGAGTT
1 GTAGTAATAGTAAATGAGTT
*
50289250 GTAGTATTAGTAAATGAG
1 GTAGTAATAGTAAATGAG
50289268 CCCAACGCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.26, T:0.34
Consensus pattern (20 bp):
GTAGTAATAGTAAATGAGTT
Found at i:50294998 original size:21 final size:21
Alignment explanation
Indices: 50294968--50295007 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50294958 TAAAAATGAT
*
50294968 ATATTTATATTATTGATTGTG
1 ATATTAATATTATTGATTGTG
*
50294989 ATATTAATATTGTTGATTG
1 ATATTAATATTATTGATTG
50295008 CAAAATATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (21 bp):
ATATTAATATTATTGATTGTG
Found at i:50297501 original size:4 final size:4
Alignment explanation
Indices: 50297492--50297518 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
50297482 ATTTTTATTT
50297492 TTAA TTAA TTAA TTAA TTAA TTAA TTA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTA
50297519 TCTTTAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:50298484 original size:61 final size:61
Alignment explanation
Indices: 50298414--50298539 Score: 173
Period size: 61 Copynumber: 2.1 Consensus size: 61
50298404 CACACGAGCG
* * *
50298414 TGTGCAAGGCCATGTGGACCACACAGGCCAGCTACCTA-AGTCGTGTTAATCCACATGGGCA
1 TGTGCAAGGCCATGTGGACCACACAGACCAGCAACCTAGA-CCGTGTTAATCCACATGGGCA
* ** *
50298475 TGTGTAAGGCCATGTGGATTACACAGACCAGCAACCTAGACCGTGTTAATCCACATGGGCG
1 TGTGCAAGGCCATGTGGACCACACAGACCAGCAACCTAGACCGTGTTAATCCACATGGGCA
50298536 TGTG
1 TGTG
50298540 GGCCAAAAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
61 56 0.98
62 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.21
Consensus pattern (61 bp):
TGTGCAAGGCCATGTGGACCACACAGACCAGCAACCTAGACCGTGTTAATCCACATGGGCA
Found at i:50300451 original size:170 final size:170
Alignment explanation
Indices: 50300169--50300510 Score: 657
Period size: 170 Copynumber: 2.0 Consensus size: 170
50300159 GTGCAGTGTC
*
50300169 TCTGTTGCAAGATGAGGCTTACCATTGGTGGCTAACCATCTAGGAGGGCACTCAACCTAAACACA
1 TCTGTTGCAAGATGAGGCTTACCATTGGTGGCTAACCATCTAGGAGGGCACTCAACCCAAACACA
50300234 TCACTTGGAATTTCTTCAGGAACACCTTTCAGAGTAAGTATGTGGGGGTGAGTTATGTGGAGGCC
66 TCACTTGGAATTTCTTCAGGAACACCTTTCAGAGTAAGTATGTGGGGGTGAGTTATGTGGAGGCC
*
50300299 CGTAGACTCGAGTTTGTGAGCCTTGTTAAAGGTGAGAGGA
131 CGTAGACTCGAGTTTGTGAGCCTTGTTAAAGGTGAAAGGA
50300339 TCTGTTGCAAGATGAGGCTTACCATTGGTGGCTAACCATCTAGGAGGGCACTCAACCCAAACACA
1 TCTGTTGCAAGATGAGGCTTACCATTGGTGGCTAACCATCTAGGAGGGCACTCAACCCAAACACA
*
50300404 TCACTTGGGATTTCTTCAGGAACACCTTTCAGAGTAAGTATGTGGGGGTGAGTTATGTGGAGGCC
66 TCACTTGGAATTTCTTCAGGAACACCTTTCAGAGTAAGTATGTGGGGGTGAGTTATGTGGAGGCC
50300469 CGTAGACTCGAGTTTGTGAGCCTTGTTAAAGGTGAAAGGA
131 CGTAGACTCGAGTTTGTGAGCCTTGTTAAAGGTGAAAGGA
50300509 TC
1 TC
50300511 GTGCCCGAGA
Statistics
Matches: 169, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
170 169 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.27
Consensus pattern (170 bp):
TCTGTTGCAAGATGAGGCTTACCATTGGTGGCTAACCATCTAGGAGGGCACTCAACCCAAACACA
TCACTTGGAATTTCTTCAGGAACACCTTTCAGAGTAAGTATGTGGGGGTGAGTTATGTGGAGGCC
CGTAGACTCGAGTTTGTGAGCCTTGTTAAAGGTGAAAGGA
Found at i:50307886 original size:77 final size:77
Alignment explanation
Indices: 50307800--50307949 Score: 239
Period size: 77 Copynumber: 1.9 Consensus size: 77
50307790 GAATTACATA
* * *
50307800 GAATAATTAGAACAATATAAATTTGATAGAATAGAATAAATGGAAAAGGAGTCAAAATGAT-ATA
1 GAATAATTAGAACAATATAAATATGATAGAATAAAATAAATGGAAAAGGAGTCAAAA-CATCATA
50307864 ATACAAAAAATTG
65 ATACAAAAAATTG
* *
50307877 GAATAATTAGAATAATATAAATATGATAGAATAAAATTAATGGAAAAGGAGTCAAAACATCATAA
1 GAATAATTAGAACAATATAAATATGATAGAATAAAATAAATGGAAAAGGAGTCAAAACATCATAA
50307942 TACAAAAA
66 TACAAAAA
50307950 TTTTAGTCTA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
76 2 0.03
77 65 0.97
ACGTcount: A:0.57, C:0.05, G:0.14, T:0.24
Consensus pattern (77 bp):
GAATAATTAGAACAATATAAATATGATAGAATAAAATAAATGGAAAAGGAGTCAAAACATCATAA
TACAAAAAATTG
Found at i:50310683 original size:43 final size:43
Alignment explanation
Indices: 50310582--50311204 Score: 206
Period size: 43 Copynumber: 14.4 Consensus size: 43
50310572 AGATCTGTAA
* *** * *
50310582 TCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTAC-CAG
1 TCTTCGATCTACTCCACTG-TAATCAGGGAGATA-AAATCCGCAG
* * * *
50310626 -CTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCCGCCG
1 TCTTCGATCTACTCCACTGTAATCAGGGAGATAAAATCCGCAG
* * * ** * * * * *
50310668 TCTTCGACCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAA
1 TCTTCGATCTACTCCACT-GTAATCAGGGAGATAAAATCCGCAG
* ** * *
50310712 TCTTCGATCTATTCCACTGTTGTCCAGGGAGATAGAACTAC-CAG
1 TCTTCGATCTACTCCACTGTAAT-CAGGGAGATA-AAATCCGCAG
* * * *
50310756 -CTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCCGCCG
1 TCTTCGATCTACTCCACTGTAATCAGGGAGATAAAATCCGCAG
* * * ** * * * * *
50310798 TCTTCGACCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAA
1 TCTTCGATCTACTCCACT-GTAATCAGGGAGATAAAATCCGCAG
* *** * *
50310842 TCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTAC-CAG
1 TCTTCGATCTACTCCACTG-TAATCAGGGAGATA-AAATCCGCAG
* * * *
50310886 -CTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCCGCCG
1 TCTTCGATCTACTCCACTGTAATCAGGGAGATAAAATCCGCAG
* * * ** * * * * *
50310928 TCTTCGACCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAA
1 TCTTCGATCTACTCCACT-GTAATCAGGGAGATAAAATCCGCAG
* *** * *
50310972 TCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTAC-CAG
1 TCTTCGATCTACTCCACTG-TAATCAGGGAGATA-AAATCCGCAG
* * * *
50311016 -CTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCCGCCG
1 TCTTCGATCTACTCCACTGTAATCAGGGAGATAAAATCCGCAG
* * * * ** * * *** *
50311058 TCTTCAACCTGCTCCACTATTGCTTAGGGAGAT-AGATCTATAA
1 TCTTCGATCTACTCCACT-GTAATCAGGGAGATAAAATCCGCAG
* *** * *
50311101 TCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTAC-CAG
1 TCTTCGATCTACTCCACTG-TAATCAGGGAGATA-AAATCCGCAG
* * * *
50311145 -CTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCCGCCG
1 TCTTCGATCTACTCCACTGTAATCAGGGAGATAAAATCCGCAG
* *
50311187 TCTTCGACCTGCTCCACT
1 TCTTCGATCTACTCCACT
50311205 ATTGCTTAGG
Statistics
Matches: 397, Mismatches: 159, Indels: 47
0.66 0.26 0.08
Matches are distributed among these distances:
41 20 0.05
42 59 0.15
43 174 0.44
44 136 0.34
45 8 0.02
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (43 bp):
TCTTCGATCTACTCCACTGTAATCAGGGAGATAAAATCCGCAG
Found at i:50310805 original size:130 final size:130
Alignment explanation
Indices: 50310572--50311322 Score: 1342
Period size: 130 Copynumber: 5.8 Consensus size: 130
50310562 NNNNNNNNNN
50310572 AGATCTGTAATCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTACCAGCTTCAATGTAC
1 AGATCTGTAATCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTACCAGCTTCAATGTAC
50310637 TCCACTGTAATCAGGGAGGTAAAATCCGCCGTCTTCGACCTGCTCCACTATTGCTTAGGGAGATA
66 TCCACTGTAATCAGGGAGGTAAAATCCGCCGTCTTCGACCTGCTCCACTATTGCTTAGGGAGATA
*
50310702 AGATCTGTAATCTTCGATCTATTCCACTGTTGTCCAGGGAGATAGAACTACCAGCTTCAATGTAC
1 AGATCTGTAATCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTACCAGCTTCAATGTAC
50310767 TCCACTGTAATCAGGGAGGTAAAATCCGCCGTCTTCGACCTGCTCCACTATTGCTTAGGGAGATA
66 TCCACTGTAATCAGGGAGGTAAAATCCGCCGTCTTCGACCTGCTCCACTATTGCTTAGGGAGATA
50310832 AGATCTGTAATCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTACCAGCTTCAATGTAC
1 AGATCTGTAATCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTACCAGCTTCAATGTAC
50310897 TCCACTGTAATCAGGGAGGTAAAATCCGCCGTCTTCGACCTGCTCCACTATTGCTTAGGGAGATA
66 TCCACTGTAATCAGGGAGGTAAAATCCGCCGTCTTCGACCTGCTCCACTATTGCTTAGGGAGATA
50310962 AGATCTGTAATCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTACCAGCTTCAATGTAC
1 AGATCTGTAATCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTACCAGCTTCAATGTAC
*
50311027 TCCACTGTAATCAGGGAGGTAAAATCCGCCGTCTTCAACCTGCTCCACTATTGCTTAGGGAGAT-
66 TCCACTGTAATCAGGGAGGTAAAATCCGCCGTCTTCGACCTGCTCCACTATTGCTTAGGGAGATA
*
50311091 AGATCTATAATCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTACCAGCTTCAATGTAC
1 AGATCTGTAATCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTACCAGCTTCAATGTAC
50311156 TCCACTGTAATCAGGGAGGTAAAATCCGCCGTCTTCGACCTGCTCCACTATTGCTTAGGGAGATA
66 TCCACTGTAATCAGGGAGGTAAAATCCGCCGTCTTCGACCTGCTCCACTATTGCTTAGGGAGATA
* ***** * * *
50311221 AGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGT
1 AGATCTGTAATCTTCGATCTATTCCACTG--TTGCCCAGGGAGATAGAACTACCAGCTTCAATGT
* * *
50311286 ACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
64 ACTCCACTGTAATCAGGGAGGTAAAATCCGCCGTCTT
50311323 TGATCTTCAA
Statistics
Matches: 600, Mismatches: 18, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
129 127 0.21
130 413 0.69
132 60 0.10
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (130 bp):
AGATCTGTAATCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTACCAGCTTCAATGTAC
TCCACTGTAATCAGGGAGGTAAAATCCGCCGTCTTCGACCTGCTCCACTATTGCTTAGGGAGATA
Found at i:50311191 original size:86 final size:86
Alignment explanation
Indices: 50310582--50311220 Score: 315
Period size: 86 Copynumber: 7.4 Consensus size: 86
50310572 AGATCTGTAA
* * *
50310582 TCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTACCAGCTTCAATGTACTCCACTGTAA
1 TCTTCGATCTACTCCACTGTTGCTCAGGGAGATAGAACTACCAGCTTCAATCTACTCCACTGTAA
* *
50310647 TCAGGGAGGTAAAATCCGCCG
66 TCAGGGAGATAAAATCCGCAG
* * * * * *** * * * *
50310668 TCTTCGACCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCGATCTATTCCACTGTT
1 TCTTCGATCTACTCCACTGTTGCTCAGGGAGAT-AGAACTACCAGCTTCAATCTACTCCACTGTA
* * *
50310733 GTCCAGGGAGATAGAACTAC-CAG
65 AT-CAGGGAGATA-AAATCCGCAG
* * ** * * * * * * * *
50310756 -CTTCAATGTACTCCACTG-TAATCAGGGAGGTA-AAATCCGCCGTCTTCGACCTGCTCCACTAT
1 TCTTCGATCTACTCCACTGTTGCTCAGGGAGATAGAACTAC-CAG-CTTCAATCTACTCCACT-G
** * * * * *
50310818 TGCTTAGGGAGATAAGATCTGTAA
63 TAATCAGGGAGATAAAATCCGCAG
* * *
50310842 TCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTACCAGCTTCAATGTACTCCACTGTAA
1 TCTTCGATCTACTCCACTGTTGCTCAGGGAGATAGAACTACCAGCTTCAATCTACTCCACTGTAA
* *
50310907 TCAGGGAGGTAAAATCCGCCG
66 TCAGGGAGATAAAATCCGCAG
* * * * * *** * * *
50310928 TCTTCGACCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCGATCTATTCCACTGTT
1 TCTTCGATCTACTCCACTGTTGCTCAGGGAGAT-AGAACTACCAGCTTCAATCTACTCCACTG-T
*** * *
50310993 GCCCAGGGAGATAGAACTAC-CAG
64 AATCAGGGAGATA-AAATCCGCAG
* * ** * * * * * * *
50311016 -CTTCAATGTACTCCACTG-TAATCAGGGAGGTA-AAATCCGCCGTCTTCAACCTGCTCCACTAT
1 TCTTCGATCTACTCCACTGTTGCTCAGGGAGATAGAACTAC-CAG-CTTCAATCTACTCCACT-G
** * * *** *
50311078 TGCTTAGGGAGAT-AGATCTATAA
63 TAATCAGGGAGATAAAATCCGCAG
* * *
50311101 TCTTCGATCTATTCCACTGTTGCCCAGGGAGATAGAACTACCAGCTTCAATGTACTCCACTGTAA
1 TCTTCGATCTACTCCACTGTTGCTCAGGGAGATAGAACTACCAGCTTCAATCTACTCCACTGTAA
* *
50311166 TCAGGGAGGTAAAATCCGCCG
66 TCAGGGAGATAAAATCCGCAG
* * * *
50311187 TCTTCGACCTGCTCCACTATTGCTTAGGGAGATA
1 TCTTCGATCTACTCCACTGTTGCTCAGGGAGATA
50311221 AGATCTGTAA
Statistics
Matches: 379, Mismatches: 153, Indels: 42
0.66 0.27 0.07
Matches are distributed among these distances:
84 6 0.02
85 14 0.04
86 196 0.52
87 112 0.30
88 39 0.10
89 12 0.03
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (86 bp):
TCTTCGATCTACTCCACTGTTGCTCAGGGAGATAGAACTACCAGCTTCAATCTACTCCACTGTAA
TCAGGGAGATAAAATCCGCAG
Found at i:50311292 original size:45 final size:44
Alignment explanation
Indices: 50311232--50311389 Score: 113
Period size: 45 Copynumber: 3.4 Consensus size: 44
50311222 GATCTGTAAT
*
50311232 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGG
1 CTTCAATCTACTCCACTGCCAAAT-CAGGGAGATAGAATTATCGG
* * * * * *
50311277 CTTCAATGTACTCCACTG--TAGTCAGGGAGGTAAAATCTGCCATCTTTGAT
1 CTTCAATCTACTCCACTGCCAAATCAGGGAGATAGAAT-T---ATC---G-G
* *
50311327 CTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAAT-CAGGGAGATAGAATTATCGG
* *
50311372 CTTTAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
50311390 TAGTCAGGGA
Statistics
Matches: 84, Mismatches: 18, Indels: 22
0.68 0.15 0.18
Matches are distributed among these distances:
42 12 0.14
43 3 0.04
45 31 0.37
46 4 0.05
49 4 0.05
50 16 0.19
52 3 0.04
53 11 0.13
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGCCAAATCAGGGAGATAGAATTATCGG
Found at i:50311340 original size:95 final size:95
Alignment explanation
Indices: 50311230--50311417 Score: 340
Period size: 95 Copynumber: 2.0 Consensus size: 95
50311220 AAGATCTGTA
50311230 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
*
50311295 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCCGCCATCTTTG
* * *
50311325 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTTAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
50311390 TAGTCAGGGAGGTAAAATCCGCCATCTT
66 TAGTCAGGGAGGTAAAATCCGCCATCTT
50311418 CGACCTGCTT
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
95 89 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCCGCCATCTTTG
Found at i:50311478 original size:134 final size:134
Alignment explanation
Indices: 50311325--50312002 Score: 1223
Period size: 134 Copynumber: 5.1 Consensus size: 134
50311315 GCCATCTTTG
* *
50311325 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTTAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
50311390 TAGTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
50311455 TGCA
131 TGCA
50311459 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* * *
50311524 TAGTCAAGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGTTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
50311589 TGCA
131 TGCA
*
50311593 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
50311658 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
50311723 TGCA
131 TGCA
* *
50311727 ATCTTTAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
50311792 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
50311857 TGCA
131 TGCA
*
50311861 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTA
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
50311926 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGTTTCGCTGCCAAATACAGGAAAGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
50311991 TG-A
131 TGCA
50311994 TATCTTCAA
1 -ATCTTCAA
50312003 CCAGCTCTGC
Statistics
Matches: 524, Mismatches: 19, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
133 1 0.00
134 523 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.27
Consensus pattern (134 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
TGCA
Found at i:50311482 original size:46 final size:46
Alignment explanation
Indices: 50311430--50311894 Score: 248
Period size: 46 Copynumber: 10.4 Consensus size: 46
50311420 ACCTGCTTCG
* *
50311430 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * ** * *
50311476 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGGAGGTA-AGATCTGCAATCTTCAATCTATTCCA
* * * * * ** * *
50311521 CTG--TAGT-CAAGGAGGTAAAATCTGCCATCTTTGATCTGCTT-CG
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCT-ATTCCA
* * *
50311564 TTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * ** * *
50311610 CTGCCAAATACAGGGAGAT-AGAAT-TATC-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGGAGGTAAG-ATCT-GCAATCTTCAATCTATTCCA
* * * * * * *
50311655 CTG--TAGT-CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT-CG
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCT-ATTCCA
* * *
50311698 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTTAATCTATTCCA
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * ** * * *
50311744 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCT
1 CTGCCAAATACAGGGAGGTA-AGATCTGCAATCTTCAATCTATTCCA
* * * * * * *
50311789 CTG--TAGT-CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT-CG
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCT-ATTCCA
* *
50311832 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
50311878 CTGCCAAATACAGGGAG
1 CTGCCAAATACAGGGAG
50311895 ATAGAGTTAT
Statistics
Matches: 292, Mismatches: 101, Indels: 52
0.66 0.23 0.12
Matches are distributed among these distances:
41 6 0.02
42 30 0.10
43 39 0.13
44 3 0.01
45 61 0.21
46 145 0.50
47 8 0.03
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.26
Consensus pattern (46 bp):
CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
Found at i:50311524 original size:229 final size:226
Alignment explanation
Indices: 50311125--50311557 Score: 661
Period size: 229 Copynumber: 1.9 Consensus size: 226
50311115 CACTGTTGCC
*
50311125 CAGGGAGATAGAACTACCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCCGCCGTCT
1 CAGGGAGATAGAACTACCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCCGCCATCT
* * * * * *
50311190 TCGACCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCCAAA
66 TCGACCTGCTCCACAAATAC-TAGGAAGACAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
*
50311255 TACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCAT
130 TACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCTGCCAT
50311320 CTTTGATCTTCAATCTATTCCACTGCCAAATG
195 CTTTGATCTTCAATCTATTCCACTGCCAAATG
** * * * *
50311352 CAGGGAGATAGAGTTATCGGCTTTAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCT
1 CAGGGAGATAGAACTACCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCCGCCATCT
* *
50311417 TCGACCTGCTTCGCTGCCAAATAC-AGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
66 TCGACCTGC-TC-C--ACAAATACTAGGAAGACAAGATCTGCAATCTTCAATCTATTCCACTGCC
*
50311481 AAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCTGC
127 AAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCTGC
50311546 CATCTTTGATCT
192 CATCTTTGATCT
50311558 GCTTCGTTGC
Statistics
Matches: 185, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
227 67 0.36
228 2 0.01
229 112 0.61
231 4 0.02
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (226 bp):
CAGGGAGATAGAACTACCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCCGCCATCT
TCGACCTGCTCCACAAATACTAGGAAGACAAGATCTGCAATCTTCAATCTATTCCACTGCCAAAT
ACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCTGCCATC
TTTGATCTTCAATCTATTCCACTGCCAAATG
Found at i:50312096 original size:86 final size:86
Alignment explanation
Indices: 50311950--50312299 Score: 547
Period size: 86 Copynumber: 4.1 Consensus size: 86
50311940 AAATCTGCCA
* * * * *
50311950 TCTTCGATCTGTTTCGCTGCCAAATACAGGAAAGCAAGATCTGATATCTTCAACCAGCTCTGCTA
1 TCTTCGATCTGCTTCGCTGTC-AATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTA
50312015 CAAACGAGAGAGGCAAGGTTTG
65 CAAACGAGAGAGGCAAGGTTTG
* *
50312037 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
*
50312102 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGAGGCAAGGTTTG
* *
50312123 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
*
50312188 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGAGGCAAGGTTTG
* *
50312209 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATAACTTCAACCAGCTCTGCTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
* * *
50312274 GACCGAGAGAGGCAAGGTTTA
66 AAACGAGAGAGGCAAGGTTTG
50312295 TCTTC
1 TCTTC
50312300 AATTTTTACT
Statistics
Matches: 247, Mismatches: 16, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
86 228 0.92
87 19 0.08
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (86 bp):
TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
AAACGAGAGAGGCAAGGTTTG
Found at i:50312245 original size:42 final size:42
Alignment explanation
Indices: 50312025--50312245 Score: 98
Period size: 42 Copynumber: 5.2 Consensus size: 42
50312015 CAAACGAGAG
*
50312025 AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
1 AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
* * * * * * * *
50312067 AGGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACAA-AC-GAGA
1 AGGCAAGGT-T--TGTCTTCGATCTGCTTC-GCTGTCAATGCAG-GA
* *
50312110 GTGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
1 -AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
* * * * * * * *
50312153 AGGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACAA-AC-GAGA
1 AGGCAAGGT-T--TGTCTTCGATCTGCTTC-GCTGTCAATGCAG-GA
*
50312196 GTGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
50312239 AGGCAAG
1 AGGCAAG
50312246 ATCTGATAAC
Statistics
Matches: 120, Mismatches: 39, Indels: 40
0.60 0.20 0.20
Matches are distributed among these distances:
41 24 0.20
42 32 0.27
43 16 0.13
44 24 0.20
45 24 0.20
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.27
Consensus pattern (42 bp):
AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
Found at i:50316457 original size:19 final size:20
Alignment explanation
Indices: 50316433--50316476 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
50316423 CGTGAAAGTC
* *
50316433 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
50316452 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
50316472 -AATGC
1 TAATGC
50316477 CAAAAGAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:50318945 original size:8 final size:8
Alignment explanation
Indices: 50318929--50318960 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
50318919 TTTGTTTTCG
*
50318929 TAAATAAA
1 TAAAAAAA
50318937 TAAAAAAA
1 TAAAAAAA
50318945 TAAAAAAA
1 TAAAAAAA
50318953 TAAAAAAA
1 TAAAAAAA
50318961 AAACTAGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
TAAAAAAA
Found at i:50323088 original size:8 final size:8
Alignment explanation
Indices: 50323072--50323103 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
50323062 TTTGTTTTCG
*
50323072 TAAATAAA
1 TAAAAAAA
50323080 TAAAAAAA
1 TAAAAAAA
50323088 TAAAAAAA
1 TAAAAAAA
50323096 TAAAAAAA
1 TAAAAAAA
50323104 AAACTAGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
TAAAAAAA
Found at i:50323764 original size:102 final size:101
Alignment explanation
Indices: 50323588--50323790 Score: 370
Period size: 102 Copynumber: 2.0 Consensus size: 101
50323578 CCATTGATCA
*
50323588 CCATCATCATCAACATGCTATGAAGTTTGGACACAGACAGGTAATATAAGTACGATATGATAGGG
1 CCATCATCATCAACATGCTATGAAGTTTGGACACAGACAGGTAATATAAGTACGATATGATAAGG
*
50323653 ACACCACGATACAATAATTTTTAAAAAATGGGGACAC
66 ACACCACGATACAATAATTTTT-AAAAATGAGGACAC
50323690 CCATCATCATCAACATGCTATGAAGTTTGGACACAGACAGGTAATATAAGTACGATATGATAAGG
1 CCATCATCATCAACATGCTATGAAGTTTGGACACAGACAGGTAATATAAGTACGATATGATAAGG
*
50323755 ACACGACGATACAATAATTTTTAAAAATGAGGACAC
66 ACACCACGATACAATAATTTTTAAAAATGAGGACAC
50323791 GGATATAATA
Statistics
Matches: 98, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
101 13 0.13
102 85 0.87
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.24
Consensus pattern (101 bp):
CCATCATCATCAACATGCTATGAAGTTTGGACACAGACAGGTAATATAAGTACGATATGATAAGG
ACACCACGATACAATAATTTTTAAAAATGAGGACAC
Found at i:50325294 original size:17 final size:17
Alignment explanation
Indices: 50325261--50325305 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
50325251 CGCGTAAGAC
* *
50325261 AACAGTCCATATGAAAT
1 AACAGTTCATATAAAAT
*
50325278 AATAGTTCATATAAAAT
1 AACAGTTCATATAAAAT
*
50325295 AGCAGTTCATA
1 AACAGTTCATA
50325306 CAACATCATA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.29
Consensus pattern (17 bp):
AACAGTTCATATAAAAT
Found at i:50326206 original size:23 final size:23
Alignment explanation
Indices: 50326140--50326316 Score: 196
Period size: 24 Copynumber: 7.6 Consensus size: 23
50326130 ACATATACCA
**
50326140 AGTGATAAGGGTTCATACATGTCT
1 AGTGAT-AGGGTTCGCACATGTCT
* *
50326164 GGTGATAGGGGTTCGTACATGTCT
1 AGTGATA-GGGTTCGCACATGTCT
*
50326188 GGTGATAGGGTTCGCACATGTCT
1 AGTGATAGGGTTCGCACATGTCT
*
50326211 AGTGATATGGTTCGCACATGTCT
1 AGTGATAGGGTTCGCACATGTCT
**
50326234 -GTGATAGGGGTT-ATACATGTCT
1 AGTGATA-GGGTTCGCACATGTCT
*
50326256 AGTGATAGGTGTTCACACATGTCT
1 AGTGATAGG-GTTCGCACATGTCT
*
50326280 GGTGATAGGGATTCGCACATGTCT
1 AGTGATAGGG-TTCGCACATGTCT
*
50326304 AGTGATACGGTTC
1 AGTGATAGGGTTC
50326317 ACAGTTATCA
Statistics
Matches: 134, Mismatches: 13, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
22 16 0.12
23 54 0.40
24 64 0.48
ACGTcount: A:0.22, C:0.15, G:0.31, T:0.33
Consensus pattern (23 bp):
AGTGATAGGGTTCGCACATGTCT
Found at i:50345007 original size:13 final size:13
Alignment explanation
Indices: 50344989--50345013 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50344979 CAACATACTC
50344989 ACAGAGATTAATA
1 ACAGAGATTAATA
50345002 ACAGAGATTAAT
1 ACAGAGATTAAT
50345014 CTCCCTGACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.16, T:0.24
Consensus pattern (13 bp):
ACAGAGATTAATA
Found at i:50345780 original size:21 final size:21
Alignment explanation
Indices: 50345737--50345785 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
50345727 AATAGAAAAT
*
50345737 ATATCAAAAAATTAAAAAGTAC
1 ATAT-AAAAAATAAAAAAGTAC
*
50345759 A-ATAAAAAATAAAAAATTTAC
1 ATATAAAAAATAAAAAA-GTAC
50345780 ATATAA
1 ATATAA
50345786 TTTGAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 12 0.52
21 6 0.26
22 5 0.22
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.24
Consensus pattern (21 bp):
ATATAAAAAATAAAAAAGTAC
Found at i:50346710 original size:22 final size:22
Alignment explanation
Indices: 50346680--50346723 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
50346670 AACACTCTTT
*
50346680 TAAATAATAAATAAGAAATAAG
1 TAAACAATAAATAAGAAATAAG
50346702 TAAACAATAAATAAGAAATAAG
1 TAAACAATAAATAAGAAATAAG
50346724 GGGCTCCCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.68, C:0.02, G:0.09, T:0.20
Consensus pattern (22 bp):
TAAACAATAAATAAGAAATAAG
Found at i:50346721 original size:11 final size:11
Alignment explanation
Indices: 50346685--50346722 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
50346675 TCTTTTAAAT
50346685 AATAAATAAGA
1 AATAAATAAGA
*
50346696 AATAAGTAA-A
1 AATAAATAAGA
50346706 CAATAAATAAGA
1 -AATAAATAAGA
50346718 AATAA
1 AATAA
50346723 GGGGCTCCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 1 0.04
11 21 0.91
12 1 0.04
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18
Consensus pattern (11 bp):
AATAAATAAGA
Found at i:50346723 original size:7 final size:7
Alignment explanation
Indices: 50346681--50346723 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
50346671 ACACTCTTTT
*
50346681 AAATAAT
1 AAATAAG
50346688 AAATAAG
1 AAATAAG
50346695 AAATAAG
1 AAATAAG
* *
50346702 TAAACAAT
1 -AAATAAG
50346710 AAATAAG
1 AAATAAG
50346717 AAATAAG
1 AAATAAG
50346724 GGGCTCCCTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
7 25 0.83
8 5 0.17
ACGTcount: A:0.70, C:0.02, G:0.09, T:0.19
Consensus pattern (7 bp):
AAATAAG
Found at i:50348693 original size:20 final size:21
Alignment explanation
Indices: 50348668--50348706 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
50348658 GAAGTTGTGA
50348668 TTTCCTTTGG-AGTTTCTTCT
1 TTTCCTTTGGTAGTTTCTTCT
50348688 TTTCCTTTGGTAGTTTCTT
1 TTTCCTTTGGTAGTTTCTT
50348707 AAATATCTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.05, C:0.18, G:0.15, T:0.62
Consensus pattern (21 bp):
TTTCCTTTGGTAGTTTCTTCT
Done.