Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 169 of 205
Found at i:50349673 original size:32 final size:32
Alignment explanation
Indices: 50349632--50349697 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
50349622 CAATCTACAG
50349632 TACAAGATGTGATTTAAGTTCAACTCGCTCAC
1 TACAAGATGTGATTTAAGTTCAACTCGCTCAC
50349664 TACAAGATGTGATTTAAGTTCAACTCGCTCAC
1 TACAAGATGTGATTTAAGTTCAACTCGCTCAC
50349696 TA
1 TA
50349698 AGTTGCAACC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (32 bp):
TACAAGATGTGATTTAAGTTCAACTCGCTCAC
Found at i:50354714 original size:29 final size:28
Alignment explanation
Indices: 50354672--50354726 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
50354662 TTAATATAAT
* **
50354672 TATTGATATAATATTTTTTATATTTAAA
1 TATTGATACAATATTAATTATATTTAAA
50354700 TATTGCATACAATATTAATTATATTTA
1 TATTG-ATACAATATTAATTATATTTA
50354727 TCTAATATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.22
29 18 0.78
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.53
Consensus pattern (28 bp):
TATTGATACAATATTAATTATATTTAAA
Found at i:50356780 original size:3 final size:3
Alignment explanation
Indices: 50356772--50356797 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
50356762 AACAAATAGG
50356772 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
50356798 GGACTAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:50358625 original size:44 final size:44
Alignment explanation
Indices: 50358523--50358658 Score: 150
Period size: 44 Copynumber: 3.1 Consensus size: 44
50358513 ATCTGATGTG
* * * *
50358523 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGAT-CTCTAGCTTCA
** *
50358567 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-CTAGCTTCA
* * *
50358611 ATCTACTCCGCTGTAATTTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAGCTTCA
50358655 ATCT
1 ATCT
50358659 GATGTGATCT
Statistics
Matches: 76, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
42 1 0.01
43 2 0.03
44 72 0.95
45 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.33
Consensus pattern (44 bp):
ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTCTAGCTTCA
Found at i:50366015 original size:12 final size:12
Alignment explanation
Indices: 50365998--50366045 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
50365988 TGATTAAAGT
50365998 AAATAAACAATA
1 AAATAAACAATA
*
50366010 AAATAAACAAGCA
1 AAATAAACAA-TA
**
50366023 ACTTAAATCAATA
1 AAATAAA-CAATA
50366036 AAATAAACAA
1 AAATAAACAA
50366046 GCAACTTAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
12 13 0.46
13 12 0.43
14 3 0.11
ACGTcount: A:0.69, C:0.12, G:0.02, T:0.17
Consensus pattern (12 bp):
AAATAAACAATA
Found at i:50366039 original size:26 final size:26
Alignment explanation
Indices: 50366001--50366064 Score: 121
Period size: 26 Copynumber: 2.5 Consensus size: 26
50365991 TTAAAGTAAA
50366001 TAAA-CAATAAAATAAACAAGCAACT
1 TAAATCAATAAAATAAACAAGCAACT
50366026 TAAATCAATAAAATAAACAAGCAACT
1 TAAATCAATAAAATAAACAAGCAACT
50366052 TAAATCAATAAAA
1 TAAATCAATAAAA
50366065 CCAATTAGGA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 4 0.11
26 34 0.89
ACGTcount: A:0.64, C:0.14, G:0.03, T:0.19
Consensus pattern (26 bp):
TAAATCAATAAAATAAACAAGCAACT
Found at i:50367270 original size:11 final size:11
Alignment explanation
Indices: 50367252--50367297 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
50367242 GCTTGTCCTC
50367252 AAAAAAACTAA
1 AAAAAAACTAA
*
50367263 ACAAAAAC-AA
1 AAAAAAACTAA
50367273 AATAAAAAC-AA
1 AA-AAAAACTAA
50367284 AAAACAAACTAA
1 AAAA-AAACTAA
50367296 AA
1 AA
50367298 TGAAAATAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
10 5 0.17
11 21 0.70
12 4 0.13
ACGTcount: A:0.80, C:0.13, G:0.00, T:0.07
Consensus pattern (11 bp):
AAAAAAACTAA
Found at i:50367303 original size:18 final size:18
Alignment explanation
Indices: 50367261--50367297 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
50367251 CAAAAAAACT
50367261 AAAC-AAAAACAAAATAA
1 AAACAAAAAACAAAATAA
*
50367278 AAACAAAAAACAAACTAA
1 AAACAAAAAACAAAATAA
50367296 AA
1 AA
50367298 TGAAAATAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.81, C:0.14, G:0.00, T:0.05
Consensus pattern (18 bp):
AAACAAAAAACAAAATAA
Found at i:50367315 original size:23 final size:22
Alignment explanation
Indices: 50367254--50367303 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
50367244 TTGTCCTCAA
*
50367254 AAAAACTAAACAA-AAACAAAAT
1 AAAAAC-AAAAAACAAACAAAAT
50367276 AAAAACAAAAAACAAACTAAAAT
1 AAAAACAAAAAACAAAC-AAAAT
*
50367299 GAAAA
1 AAAAA
50367304 TAAGAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 5 0.21
22 10 0.42
23 9 0.38
ACGTcount: A:0.78, C:0.12, G:0.02, T:0.08
Consensus pattern (22 bp):
AAAAACAAAAAACAAACAAAAT
Found at i:50369579 original size:99 final size:99
Alignment explanation
Indices: 50369399--50369583 Score: 248
Period size: 99 Copynumber: 1.9 Consensus size: 99
50369389 TCGTGAATGG
* * *
50369399 TGTAACACCCCTAACCAGTCTCCGTCACTGAATTAGGGTTACAGAGTATTACCTTACAATAAAAA
1 TGTAACACCCCTAACCAGTCTCCGTCACAGAATTAGAGTTACAGAGCATTACCTTACAATAAAAA
**
50369464 ACATTTAAACTTTTTAACATTTGATACCAATAAA
66 ACATTTAAACAATTTAACATTTGATACCAATAAA
* * * *
50369498 TGTAACACCCCTAACCCA-TCTTCGTCATCAG-ATTAGAGTTACGGAGCATTACTTTACAATCAA
1 TGTAACACCCCTAA-CCAGTCTCCGTCA-CAGAATTAGAGTTACAGAGCATTACCTTACAATAAA
*
50369561 AAACATTTTAACAATTTAACATT
64 AAACATTTAAACAATTTAACATT
50369584 CAATAATTTA
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
99 69 0.93
100 5 0.07
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (99 bp):
TGTAACACCCCTAACCAGTCTCCGTCACAGAATTAGAGTTACAGAGCATTACCTTACAATAAAAA
ACATTTAAACAATTTAACATTTGATACCAATAAA
Found at i:50391776 original size:17 final size:17
Alignment explanation
Indices: 50391754--50391791 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
50391744 AAAACTCGTT
50391754 TCTTAAGTTTGGAAACC
1 TCTTAAGTTTGGAAACC
*
50391771 TCTTAAGTTTGGAAACT
1 TCTTAAGTTTGGAAACC
50391788 TCTT
1 TCTT
50391792 TAGTAATGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (17 bp):
TCTTAAGTTTGGAAACC
Found at i:50392268 original size:33 final size:32
Alignment explanation
Indices: 50392209--50392305 Score: 89
Period size: 33 Copynumber: 3.1 Consensus size: 32
50392199 ACTATGCAAC
* *
50392209 ATACAG-AATTAGTTTGGGCCTGAGCCCTATACA
1 ATACAGTAA-TAGTGTGGGCCTTAGCCC-ATACA
50392242 ATATCAGT-ATAGTGTGGGCCTTAGCCCAT---
1 ATA-CAGTAATAGTGTGGGCCTTAGCCCATACA
*
50392271 -TACAGTAACAGTGTGGGCCTTAGCCCAATACA
1 ATACAGTAATAGTGTGGGCCTTAGCCC-ATACA
50392303 ATA
1 ATA
50392306 ATCAATACAA
Statistics
Matches: 53, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
27 4 0.08
28 20 0.38
29 2 0.04
32 2 0.04
33 21 0.40
34 4 0.08
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (32 bp):
ATACAGTAATAGTGTGGGCCTTAGCCCATACA
Found at i:50392447 original size:26 final size:26
Alignment explanation
Indices: 50392418--50392519 Score: 107
Period size: 26 Copynumber: 3.9 Consensus size: 26
50392408 CACCAATATC
* * *
50392418 GCAGCAAAGCTACCAGTAATAGTGAT
1 GCAGCAAAGCTGCCAGTAACAGTAAT
50392444 GCAGCAAAGCTGCCAGTAACAGTAAT
1 GCAGCAAAGCTGCCAGTAACAGTAAT
* *
50392470 GCACCAAAGCTGCCAGTACCAGTATAT
1 GCAGCAAAGCTGCCAGTAACAGTA-AT
** **
50392497 GTGGCAAAGCCACCAGT-ACAGTA
1 GCAGCAAAGCTGCCAGTAACAGTA
50392520 TACTTCCCCT
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 50 0.78
27 14 0.22
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.17
Consensus pattern (26 bp):
GCAGCAAAGCTGCCAGTAACAGTAAT
Found at i:50392688 original size:26 final size:26
Alignment explanation
Indices: 50392659--50392733 Score: 89
Period size: 26 Copynumber: 2.8 Consensus size: 26
50392649 AACTCCTAGA
50392659 GGTATAATAGTCATTTTACCCTAT-GG
1 GGTAT-ATAGTCATTTTACCCTATGGG
* *
50392685 GGTATTATGGTTATTTTACCCTATGGG
1 GGTA-TATAGTCATTTTACCCTATGGG
*
50392712 GGTATTTCAGTCATTTTACCCT
1 GGTATAT-AGTCATTTTACCCT
50392734 TCGAAGGTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 22 0.54
27 19 0.46
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.43
Consensus pattern (26 bp):
GGTATATAGTCATTTTACCCTATGGG
Found at i:50392727 original size:27 final size:27
Alignment explanation
Indices: 50392697--50392840 Score: 175
Period size: 27 Copynumber: 5.3 Consensus size: 27
50392687 TATTATGGTT
* *
50392697 ATTTTACCCTAT-GGGGGTATTTCAGTC
1 ATTTTACCCT-TCGAGGGTAATTCAGTC
* * *
50392724 ATTTTACCCTTCGAAGGTAATTCGGCC
1 ATTTTACCCTTCGAGGGTAATTCAGTC
* **
50392751 ATTTTACCCTTCGGGGGTAATTTGGTC
1 ATTTTACCCTTCGAGGGTAATTCAGTC
50392778 ATTTTACCCTTCGAGGGTAATTC-GATC
1 ATTTTACCCTTCGAGGGTAATTCAG-TC
*
50392805 GTTTTACCCTTCGAGGGTAATTCAGTC
1 ATTTTACCCTTCGAGGGTAATTCAGTC
50392832 ATTTTACCC
1 ATTTTACCC
50392841 ATGATTCGCA
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.02
27 98 0.97
28 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.38
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTAATTCAGTC
Found at i:50392769 original size:54 final size:54
Alignment explanation
Indices: 50392697--50392840 Score: 193
Period size: 54 Copynumber: 2.7 Consensus size: 54
50392687 TATTATGGTT
*
50392697 ATTTTACCCTAT-GGGGGTATTTCAGTCATTTTACCCTTCGAAGGTAATTCGGCC
1 ATTTTACCCT-TCGGGGGTATTTCAGTCATTTTACCCTTCGAAGGTAATTCGACC
* * *
50392751 ATTTTACCCTTCGGGGGTAATTT-GGTCATTTTACCCTTCGAGGGTAATTCGATC
1 ATTTTACCCTTCGGGGGT-ATTTCAGTCATTTTACCCTTCGAAGGTAATTCGACC
* * *
50392805 GTTTTACCCTTCGAGGGTAATTCAGTCATTTTACCC
1 ATTTTACCCTTCGGGGGTATTTCAGTCATTTTACCC
50392841 ATGATTCGCA
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
53 4 0.05
54 71 0.90
55 4 0.05
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.38
Consensus pattern (54 bp):
ATTTTACCCTTCGGGGGTATTTCAGTCATTTTACCCTTCGAAGGTAATTCGACC
Found at i:50392796 original size:81 final size:80
Alignment explanation
Indices: 50392670--50392840 Score: 206
Period size: 81 Copynumber: 2.1 Consensus size: 80
50392660 GTATAATAGT
* * *
50392670 CATTTTACCCTATGGGGTATTATGGTTATTTTACCCTATGGGGGTATTTC-AGTCATTTTACCCT
1 CATTTTACCCTATGGGGTATTATGGTCATTTTACCCTATGAGGGTAATTCGA-TCATTTTACCCT
*
50392734 TCGAAGGTAATTCGGC
65 TCGAAGGTAATTCAGC
*
50392750 CATTTTACCCT-TCGGGGGTAATT-TGGTCATTTTACCCT-TCGAGGGTAATTCGATCGTTTTAC
1 CATTTTACCCTAT--GGGGT-ATTATGGTCATTTTACCCTAT-GAGGGTAATTCGATCATTTTAC
* *
50392812 CCTTCGAGGGTAATTCAGT
62 CCTTCGAAGGTAATTCAGC
50392831 CATTTTACCC
1 CATTTTACCC
50392841 ATGATTCGCA
Statistics
Matches: 79, Mismatches: 7, Indels: 9
0.83 0.07 0.09
Matches are distributed among these distances:
79 1 0.01
80 12 0.15
81 62 0.78
82 4 0.05
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.39
Consensus pattern (80 bp):
CATTTTACCCTATGGGGTATTATGGTCATTTTACCCTATGAGGGTAATTCGATCATTTTACCCTT
CGAAGGTAATTCAGC
Found at i:50398819 original size:26 final size:26
Alignment explanation
Indices: 50398790--50398865 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 26
50398780 CACCAATATC
* * *
50398790 GCAGCAAAGCTGCTACTAATAATGAT
1 GCAGCAAAGCTGCCACTAACAATAAT
* *
50398816 GCAGCAAAACTGCCAGTAACAATAAT
1 GCAGCAAAGCTGCCACTAACAATAAT
50398842 GCAGCAAAGCTGCCAGC-AACAATA
1 GCAGCAAAGCTGCCA-CTAACAATA
50398866 TATGTGGCAA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.42, C:0.24, G:0.18, T:0.16
Consensus pattern (26 bp):
GCAGCAAAGCTGCCACTAACAATAAT
Found at i:50399059 original size:27 final size:26
Alignment explanation
Indices: 50399037--50399162 Score: 87
Period size: 27 Copynumber: 4.7 Consensus size: 26
50399027 AGGGGTACAA
*
50399037 CAGTCATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTATGAGGGTA-AT
* *
50399064 CGGTCATTTTACCCTTTGAGGGTAATT
1 CAGTCATTTTACCCTATGAGGGTAA-T
* * *
50399091 TAGTCATTTTACCCGT-CGGGGGTAATT
1 CAGTCATTTTACCC-TATGAGGGTAA-T
* *
50399118 GAGTCATTTTAACCT-TCGAGGGTAATT
1 CAGTCATTTTACCCTAT-GAGGGTAA-T
* *
50399145 CGGTCATTTTTCCC-ATGA
1 CAGTCATTTTACCCTATGA
50399163 TTCGCACATT
Statistics
Matches: 80, Mismatches: 15, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
26 3 0.04
27 76 0.95
28 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (26 bp):
CAGTCATTTTACCCTATGAGGGTAAT
Found at i:50399097 original size:54 final size:54
Alignment explanation
Indices: 50399037--50399162 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
50399027 AGGGGTACAA
* * *
50399037 CAGTCATTTTACCCTATGAGGGTATTTCG-GTCATTTTACCCTTTGAGGGTAATT
1 CAGTCATTTTACCCTATGAGGGTAATT-GAGTCATTTTAACCTTCGAGGGTAATT
* * *
50399091 TAGTCATTTTACCCGT-CGGGGGTAATTGAGTCATTTTAACCTTCGAGGGTAATT
1 CAGTCATTTTACCC-TATGAGGGTAATTGAGTCATTTTAACCTTCGAGGGTAATT
* *
50399145 CGGTCATTTTTCCC-ATGA
1 CAGTCATTTTACCCTATGA
50399163 TTCGCACATT
Statistics
Matches: 58, Mismatches: 11, Indels: 7
0.76 0.14 0.09
Matches are distributed among these distances:
53 2 0.03
54 55 0.95
55 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (54 bp):
CAGTCATTTTACCCTATGAGGGTAATTGAGTCATTTTAACCTTCGAGGGTAATT
Found at i:50404802 original size:21 final size:21
Alignment explanation
Indices: 50404778--50404817 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50404768 ATTTAGCCAT
* *
50404778 TTTTTATTTTTATTTTTATTG
1 TTTTTAATTTAATTTTTATTG
50404799 TTTTTAATTTAATTTTTAT
1 TTTTTAATTTAATTTTTAT
50404818 ATTCTAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.78
Consensus pattern (21 bp):
TTTTTAATTTAATTTTTATTG
Found at i:50409948 original size:27 final size:27
Alignment explanation
Indices: 50409907--50410130 Score: 156
Period size: 27 Copynumber: 8.4 Consensus size: 27
50409897 CAAACTATTA
* * *
50409907 TAAAATGACTGTTATGTCCTCACGTGG
1 TAAAATGACTATTATGCCCTTACGTGG
*
50409934 TAAAATGACTATTATGCCCTTA--TGT
1 TAAAATGACTATTATGCCCTTACGTGG
50409959 TATAAATGACTATTATGCCCTTACGTGG
1 TA-AAATGACTATTATGCCCTTACGTGG
* *
50409987 TAAAATGACTATTATGCCCCTA--TGT
1 TAAAATGACTATTATGCCCTTACGTGG
* * **
50410012 TATAAATGAATGTTATG-CCTTCAAATGG
1 TA-AAATGACTATTATGCCCTT-ACGTGG
* **
50410040 TAAAATGACTATTATGCGCC-TATGTTA
1 TAAAATGACTATTATGC-CCTTACGTGG
* * **
50410067 TAAAATGACTGTTATGCCAC-TATGTTA
1 TAAAATGACTATTATGCC-CTTACGTGG
* * * **
50410094 TAAAATTACTATTATGCCCCTATGTTA
1 TAAAATGACTATTATGCCCTTACGTGG
50410121 TAAAATGACT
1 TAAAATGACT
50410131 GTATGCTTAA
Statistics
Matches: 165, Mismatches: 21, Indels: 22
0.79 0.10 0.11
Matches are distributed among these distances:
25 11 0.07
26 35 0.21
27 108 0.65
28 9 0.05
29 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.37
Consensus pattern (27 bp):
TAAAATGACTATTATGCCCTTACGTGG
Found at i:50409968 original size:53 final size:53
Alignment explanation
Indices: 50409904--50410136 Score: 301
Period size: 53 Copynumber: 4.4 Consensus size: 53
50409894 CCCCAAACTA
*
50409904 TTATAAAATGACTGTTATGTCCTCACGTGGTAAAATGACTATTATGCCCTTATG
1 TTATAAAATGACTGTTATG-CCTCACGTGGTAAAATGACTATTATGCCCCTATG
* *
50409958 TTAT-AAATGACTATTATGCCCTTACGTGGTAAAATGACTATTATGCCCCTATG
1 TTATAAAATGACTGTTATG-CCTCACGTGGTAAAATGACTATTATGCCCCTATG
* ** *
50410011 TTAT-AAATGAATGTTATGCCTTCAAATGGTAAAATGACTATTATGCGCCTATG
1 TTATAAAATGACTGTTATGCC-TCACGTGGTAAAATGACTATTATGCCCCTATG
* * ** *
50410064 TTATAAAATGACTGTTATGCCACTATGTTATAAAATTACTATTATGCCCCTATG
1 TTATAAAATGACTGTTATGCCTC-ACGTGGTAAAATGACTATTATGCCCCTATG
50410118 TTATAAAATGACTG-TATGC
1 TTATAAAATGACTGTTATGC
50410137 TTAATGTTAT
Statistics
Matches: 158, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
52 2 0.01
53 99 0.63
54 57 0.36
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (53 bp):
TTATAAAATGACTGTTATGCCTCACGTGGTAAAATGACTATTATGCCCCTATG
Found at i:50410136 original size:80 final size:80
Alignment explanation
Indices: 50409904--50410130 Score: 230
Period size: 80 Copynumber: 2.8 Consensus size: 80
50409894 CCCCAAACTA
* * ** *
50409904 TTATAAAATGACTGTTATGTCCTCACGTGGTAAAATGACTATTATGCCCTTATGTTAT-AAATGA
1 TTATAAAATGACTGTTATGCCCT-ATGTTATAAAATGACTATTATGCCCATATGTTATAAAATGA
50409968 CTATTATGCCCTTACG
65 CTATTATGCCCTTACG
** * * * * *
50409984 TGGTAAAATGACTATTATGCCCCTATGTTAT-AAATGAATGTTATGCCTTCAAATG--GTAAAAT
1 TTATAAAATGACTGTTATG-CCCTATGTTATAAAATGACTATTATGCC--CATATGTTATAAAAT
*
50410046 GACTATTATGCGCC-TATG
63 GACTATTATGC-CCTTACG
* *
50410064 TTATAAAATGACTGTTATGCCACTATGTTATAAAATTACTATTATGCCCCTATGTTATAAAATGA
1 TTATAAAATGACTGTTATGCC-CTATGTTATAAAATGACTATTATGCCCATATGTTATAAAATGA
50410129 CT
65 CT
50410131 GTATGCTTAA
Statistics
Matches: 116, Mismatches: 22, Indels: 17
0.75 0.14 0.11
Matches are distributed among these distances:
79 21 0.18
80 63 0.54
81 32 0.28
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.37
Consensus pattern (80 bp):
TTATAAAATGACTGTTATGCCCTATGTTATAAAATGACTATTATGCCCATATGTTATAAAATGAC
TATTATGCCCTTACG
Found at i:50425971 original size:14 final size:14
Alignment explanation
Indices: 50425952--50425978 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50425942 TGATTTTTTT
50425952 AATTAATTAAATTA
1 AATTAATTAAATTA
50425966 AATTAATTAAATT
1 AATTAATTAAATT
50425979 TTCTAAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
AATTAATTAAATTA
Found at i:50427627 original size:13 final size:13
Alignment explanation
Indices: 50427609--50427634 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50427599 AAACTTTGTC
50427609 ATTTTAATAAAAT
1 ATTTTAATAAAAT
50427622 ATTTTAATAAAAT
1 ATTTTAATAAAAT
50427635 GTTAGATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTTTAATAAAAT
Found at i:50429345 original size:37 final size:37
Alignment explanation
Indices: 50429295--50429376 Score: 146
Period size: 37 Copynumber: 2.2 Consensus size: 37
50429285 GTCCTTAAAT
50429295 GACGTCATTTTGGGCGTCTAGAAGTCAAACCCAAAAC
1 GACGTCATTTTGGGCGTCTAGAAGTCAAACCCAAAAC
* *
50429332 GACGTCGTTTTGGGCGTCTAGAAGTCAAACCCAAAAT
1 GACGTCATTTTGGGCGTCTAGAAGTCAAACCCAAAAC
50429369 GACGTCAT
1 GACGTCAT
50429377 ATTAGACCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (37 bp):
GACGTCATTTTGGGCGTCTAGAAGTCAAACCCAAAAC
Found at i:50430598 original size:94 final size:94
Alignment explanation
Indices: 50430498--50430791 Score: 256
Period size: 94 Copynumber: 3.1 Consensus size: 94
50430488 TCAATTCATT
* * *
50430498 CCACTGCAA-TTCCAG-GGATATAATATTTGTGGCTTCATCTTACTCCATTG-AATCCTT-AGAG
1 CCACTGCAACTT-CAGAGG-TATAAGATTTGTAGCTTCATCTTACTCCACTGCAA--CTTCAGAG
50430559 AGATAAGATTCACCATGGTAGCTTCAATCTGAC
62 AGATAAGATTCACCATGGTAGCTTCAATCTGAC
* * *
50430592 CCACTGCAACTTCAGAGGTATAGGATTTGTATCTTCATCTTGCTCCACTGCAACTTCAGAGAGAT
1 CCACTGCAACTTCAGAGGTATAAGATTTGTAGCTTCATCTTACTCCACTGCAACTTCAGAGAGAT
* * * *
50430657 AAGATTCACCATTGTAGTTTCATTTTGAC
66 AAGATTCACCATGGTAGCTTCAATCTGAC
* * * * * * * * * *
50430686 CCACAGTAAATTTAG-GGATATAGGATTTGTAGTTTCATCTTGCACCACTGTAACTTCAGGGAGA
1 CCACTGCAACTTCAGAGG-TATAAGATTTGTAGCTTCATCTTACTCCACTGCAACTTCAGAGAGA
* * ** ** *
50430750 TAGGATTCGCCATTATAATTTCATTCTGAC
65 TAAGATTCACCATGGTAGCTTCAATCTGAC
*
50430780 CCATTGCAACTT
1 CCACTGCAACTT
50430792 TAGGGGCATA
Statistics
Matches: 167, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
93 5 0.03
94 156 0.93
95 6 0.04
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.33
Consensus pattern (94 bp):
CCACTGCAACTTCAGAGGTATAAGATTTGTAGCTTCATCTTACTCCACTGCAACTTCAGAGAGAT
AAGATTCACCATGGTAGCTTCAATCTGAC
Found at i:50430643 original size:44 final size:44
Alignment explanation
Indices: 50430592--50431345 Score: 231
Period size: 44 Copynumber: 16.3 Consensus size: 44
50430582 TCAATCTGAC
50430592 CCACTGCAACTTCAGAGG-TATAGGATTTGTATCTTCATCTTGCT
1 CCACTGCAACTTCAG-GGATATAGGATTTGTATCTTCATCTTGCT
* * * *
50430636 CCACTGCAACTTCAGAGAGATAAGATTCACCATTGTAGT-TTCATTTTGAC-
1 CCACTGCAACTTCAGGGATATAGGA-T-----TTGTA-TCTTCATCTTG-CT
* * * * *
50430686 CCACAGTAAATTTAGGGATATAGGATTTGTAGT-TTCATCTTGCA
1 CCACTGCAACTTCAGGGATATAGGATTTGTA-TCTTCATCTTGCT
* * * *
50430730 CCACTGTAACTTCAGGGAGATAGGATTCGCCATTATAATTTCAT-TCTGAC-
1 CCACTGCAACTTCAGGGATATAGGATTTG----TAT--CTTCATCT-TG-CT
* * ** * *
50430780 CCATTGCAACTTTAGGGGCATAGGAATTGTATCTTCAAT-TTGAT
1 CCACTGCAACTTCAGGGATATAGGATTTGTATCTTC-ATCTTGCT
** * *
50430824 CCACTATAACATCAGGGATATAGGATTTGTAACTTCATCTTGCT
1 CCACTGCAACTTCAGGGATATAGGATTTGTATCTTCATCTTGCT
* * * * *
50430868 CCACTGCAACTTCAGGGAGATAAGATTAACTATGGTAACTCTAAT-TCGAC-
1 CCACTGCAACTTCAGGGATATAGGA-T---T-T-GTATCT-TCATCTTG-CT
* * *
50430918 CCACTGCAACTTCAAGGG-TATAGTATTTGTAGCTTTATCTTGCT
1 CCACTGCAACTTC-AGGGATATAGGATTTGTATCTTCATCTTGCT
* * * *
50430962 CTACTGCAACTTCAGGGAGATACGATTCACCATTGTAGT-TTCAT-TCCGAC-
1 CCACTGCAACTTCAGGGATATAGGA-T-----TTGTA-TCTTCATCT-TG-CT
* * * *
50431012 CCACTACAACTTCAACGG-TATAGGAATTGTATCTTCAAT-TTGAT
1 CCACTGCAACTTC-AGGGATATAGGATTTGTATCTTC-ATCTTGCT
* * * * *
50431056 CCATTACAAATTCAGGGATATAGGATTTGAAGCTTCATCTTGCT
1 CCACTGCAACTTCAGGGATATAGGATTTGTATCTTCATCTTGCT
* * * *
50431100 TCACTGCAACTTTAGGAAAATAGGATTCGCCATTGTAAT-TTCAT-TCTGAC-
1 CCACTGCAACTTCAGGGATATAGGA-T-----TTGT-ATCTTCATCT-TG-CT
* *
50431150 CCACTGCAACTTCAAGGG-TATAGGAATTT-TATCTTCAATC-CGAT
1 CCACTGCAACTTC-AGGGATATAGG-ATTTGTATCTTC-ATCTTGCT
* * * * * *
50431194 GCACTGTAACTTTAGGGATATACGATTTGTAGCTTCATCTTCCT
1 CCACTGCAACTTCAGGGATATAGGATTTGTATCTTCATCTTGCT
* * *
50431238 CCACTGCAACTTCAGGGAGATAAGACTCACTATAGTAACTTCAATC-TGAC-
1 CCACTGCAACTTCAGGGATATAGGA-T---T-T-GTATCTTC-ATCTTG-CT
* * * *
50431288 CCACTGCAACTTCAGGGGTATAAGATTTGTAGCTTCATCTTACT
1 CCACTGCAACTTCAGGGATATAGGATTTGTATCTTCATCTTGCT
* *
50431332 CCACTACAAATTCA
1 CCACTGCAACTTCA
50431346 AGGAGATAAG
Statistics
Matches: 526, Mismatches: 107, Indels: 154
0.67 0.14 0.20
Matches are distributed among these distances:
43 35 0.07
44 262 0.50
45 17 0.03
46 5 0.01
47 1 0.00
48 4 0.01
49 8 0.02
50 169 0.32
51 25 0.05
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGATATAGGATTTGTATCTTCATCTTGCT
Found at i:50430794 original size:94 final size:93
Alignment explanation
Indices: 50430558--50430850 Score: 295
Period size: 94 Copynumber: 3.1 Consensus size: 93
50430548 AATCCTTAGA
* ** ** * *
50430558 GAGATAAGATTCACCATGGTAGCTTCAATCTGACCCACTGCAACTTCAGAGGTATAGGATTTGTA
1 GAGATAGGATTCACCATTATAATTTCATTCTGACCCACTGCAACTTTAG-GGTATAGGATTTGTA
* * *
50430623 TCTTCATCTTGCTCCACTGCAACTTCAGA
65 TCTTCATCTTGCACCACTGTAACTTCAGG
* * * * * * *
50430652 GAGATAAGATTCACCATTGTAGTTTCATTTTGACCCACAGTAAATTTAGGGATATAGGATTTGTA
1 GAGATAGGATTCACCATTATAATTTCATTCTGACCCACTGCAACTTTAGGG-TATAGGATTTGTA
50430717 GT-TTCATCTTGCACCACTGTAACTTCAGG
65 -TCTTCATCTTGCACCACTGTAACTTCAGG
* * * *
50430746 GAGATAGGATTCGCCATTATAATTTCATTCTGACCCATTGCAACTTTAGGGGCATAGGAATTGTA
1 GAGATAGGATTCACCATTATAATTTCATTCTGACCCACTGCAACTTTA-GGGTATAGGATTTGTA
* *
50430811 TCTTCAAT-TTG-ATCCACTATAACATCAGG
65 TCTTC-ATCTTGCA-CCACTGTAACTTCAGG
*
50430840 GATATAGGATT
1 GAGATAGGATT
50430851 TGTAACTTCA
Statistics
Matches: 168, Mismatches: 25, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
93 4 0.02
94 158 0.94
95 6 0.04
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (93 bp):
GAGATAGGATTCACCATTATAATTTCATTCTGACCCACTGCAACTTTAGGGTATAGGATTTGTAT
CTTCATCTTGCACCACTGTAACTTCAGG
Found at i:50430979 original size:138 final size:138
Alignment explanation
Indices: 50430699--50430952 Score: 312
Period size: 138 Copynumber: 1.8 Consensus size: 138
50430689 CAGTAAATTT
** * * ** *
50430699 AGGGATATAGGATTTGTAGTTTCATCTTGCACCACTGTAACTTCAGGGAGATAGGATTCGCCATT
1 AGGGATATAGGATTTGTAACTTCATCTTGCACCACTGCAACTTCAGGGAGATAAGATTAACCATG
* * * * * *
50430764 ATAATTTCATTCTGACCCATTGCAACTTTAGGGGCATAGGAATTGTATCTTCAATTTGATCCACT
66 ATAATCTAATTCTGACCCACTGCAACTTCAAGGGCATAGGAATTGTAGCTTCAATTTGATCCACT
*
50430829 ATAACATC
131 ACAACATC
* *
50430837 AGGGATATAGGATTTGTAACTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTAACTATG
1 AGGGATATAGGATTTGTAACTTCATCTTGCACCACTGCAACTTCAGGGAGATAAGATTAACCATG
* * * *
50430902 GTAACTCTAATTC-GACCCACTGCAACTTCAAGGGTATAGTATTTGTAGCTT
66 ATAA-TCTAATTCTGACCCACTGCAACTTCAAGGGCATAGGAATTGTAGCTT
50430953 TATCTTGCTC
Statistics
Matches: 96, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
138 90 0.94
139 6 0.06
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (138 bp):
AGGGATATAGGATTTGTAACTTCATCTTGCACCACTGCAACTTCAGGGAGATAAGATTAACCATG
ATAATCTAATTCTGACCCACTGCAACTTCAAGGGCATAGGAATTGTAGCTTCAATTTGATCCACT
ACAACATC
Found at i:50431012 original size:94 final size:94
Alignment explanation
Indices: 50430824--50431048 Score: 265
Period size: 94 Copynumber: 2.4 Consensus size: 94
50430814 TCAATTTGAT
* *
50430824 CCACTATAACATC-AGGGATATAGGATTTGTAACTTCATCTTGCTCCACTGCAACTTCAGGGAGA
1 CCACTACAACTTCAAGGG-TATAGGATTTGTAACTTCATCTTGCTCCACTGCAACTTCAGGGAGA
*
50430888 TAAGATTAACTATGGTAACTCTAATTCGAC
65 TAAGATTAACCATGGTAACTCTAATTCGAC
* * * * *
50430918 CCACTGCAACTTCAAGGGTATAGTATTTGTAGCTTTATCTTGCTCTACTGCAACTTCAGGGAGAT
1 CCACTACAACTTCAAGGGTATAGGATTTGTAACTTCATCTTGCTCCACTGCAACTTCAGGGAGAT
* * * * * *
50430983 ACGATTCACCATTGT-AGTTTCATTCCGAC
66 AAGATTAACCATGGTAACTCTAATT-CGAC
* * *
50431012 CCACTACAACTTCAACGGTATAGGAATTGTATCTTCA
1 CCACTACAACTTCAAGGGTATAGGATTTGTAACTTCA
50431049 ATTTGATCCA
Statistics
Matches: 109, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
93 6 0.06
94 99 0.91
95 4 0.04
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (94 bp):
CCACTACAACTTCAAGGGTATAGGATTTGTAACTTCATCTTGCTCCACTGCAACTTCAGGGAGAT
AAGATTAACCATGGTAACTCTAATTCGAC
Found at i:50431098 original size:138 final size:138
Alignment explanation
Indices: 50430918--50431345 Score: 468
Period size: 138 Copynumber: 3.1 Consensus size: 138
50430908 CTAATTCGAC
* * * *
50430918 CCACTGCAACTTCAAGGG-TATAGTATTTGTAGCTTTATCTTGCTCTACTGCAACTTCAGGGAGA
1 CCACTACAAATTC-AGGGATATAGGATTTGTAGCTTCATCTTGCTCTACTGCAACTTCAGGGAGA
* * * * *
50430982 TACGATTCACCATTGTAGTTTCATTCCGACCCACTACAACTTCAACGGTATAGGAATTGTATCTT
65 TAAGATTCACCATTGTAATTTCATTCTGACCCACTGCAACTTCAAGGGTATAGGAATTGTATCTT
50431047 CAATTTGAT
130 CAATTTGAT
* * * * *
50431056 CCATTACAAATTCAGGGATATAGGATTTGAAGCTTCATCTTGCT-TCACTGCAACTTTAGGAAAA
1 CCACTACAAATTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCT-ACTGCAACTTCAGGGAGA
* * *
50431120 TAGGATTCGCCATTGTAATTTCATTCTGACCCACTGCAACTTCAAGGGTATAGGAATTTTATCTT
65 TAAGATTCACCATTGTAATTTCATTCTGACCCACTGCAACTTCAAGGGTATAGGAATTGTATCTT
**
50431185 CAATCCGAT
130 CAATTTGAT
* ** * * * * *
50431194 GCACTGTAACTTTAGGGATATACGATTTGTAGCTTCATCTTCCTCCACTGCAACTTCAGGGAGAT
1 CCACTACAAATTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCTACTGCAACTTCAGGGAGAT
* * * * * * * * *
50431259 AAGACTCACTATAGTAACTTCAATCTGACCCACTGCAACTTCAGGGGTATAAGATTTGTAGCTTC
66 AAGATTCACCATTGTAATTTCATTCTGACCCACTGCAACTTCAAGGGTATAGGAATTGTATCTTC
50431324 -ATCTT-ACT
131 AAT-TTGA-T
50431332 CCACTACAAATTCA
1 CCACTACAAATTCA
50431346 AGGAGATAAG
Statistics
Matches: 235, Mismatches: 50, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
137 8 0.03
138 227 0.97
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (138 bp):
CCACTACAAATTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCTACTGCAACTTCAGGGAGAT
AAGATTCACCATTGTAATTTCATTCTGACCCACTGCAACTTCAAGGGTATAGGAATTGTATCTTC
AATTTGAT
Found at i:50431219 original size:232 final size:231
Alignment explanation
Indices: 50430580--50431220 Score: 708
Period size: 232 Copynumber: 2.8 Consensus size: 231
50430570 ACCATGGTAG
* * * *
50430580 CTTCAATCTGACCCACTGCAAC-TTCAGAGG-TATAGGATTTGTATCTTCATCTTGCTCCACTGC
1 CTTCAATTTGATCCACTACAACATTCAG-GGATATAGGATTTG-AACTTCATCTTGCTCCACTGC
* * * * * *
50430643 AACTTCA-GAGAGATAAGATTCACCATTGTAGTTTCATTTTGACCCACAGTAAATT-TAGGGATA
64 AACTTCAGGA-AGATAAGATTCACCATTGTAATTTCATTCTGACCCACTGCAACTTCAAGGG-TA
* * *
50430706 TAGGATTTGTAGT-TTCATCTTGCACCACTGTAACTTCAGGGAGATAGGATTCGCCATTATAATT
127 TAGGATTTGTA-TCTTCATCTTG-ATCACTGTAACTTCAGGGAGATACGATTCACCATTATAATT
* * * * **
50430770 TCATTCTGACCCATTGCAACTTTAGGGGCATAGGAATTGTAT
190 TCATTCCGACCCACTACAACTTCAACGGCATAGGAATTGTAT
*
50430812 CTTCAATTTGATCCACTATAACA-TCAGGGATATAGGATTTGTAACTTCATCTTGCTCCACTGCA
1 CTTCAATTTGATCCACTACAACATTCAGGGATATAGGATTTG-AACTTCATCTTGCTCCACTGCA
* * * * * *
50430876 ACTTCAGGGAGATAAGATTAACTATGGTAACTCTAATTC-GACCCACTGCAACTTCAAGGGTATA
65 ACTTCAGGAAGATAAGATTCACCATTGTAA-TTTCATTCTGACCCACTGCAACTTCAAGGGTATA
* * * * * * *
50430940 GTATTTGTAGCTTTATCTTGCTCTACTGCAACTTCAGGGAGATACGATTCACCATTGTAGTTTCA
129 GGATTTGTATCTTCATCTTGATC-ACTGTAACTTCAGGGAGATACGATTCACCATTATAATTTCA
*
50431005 TTCCGACCCACTACAACTTCAACGGTATAGGAATTGTAT
193 TTCCGACCCACTACAACTTCAACGGCATAGGAATTGTAT
* *
50431044 CTTCAATTTGATCCATTACAA-ATTCAGGGATATAGGATTTGAAGCTTCATCTTGCTTCACTGCA
1 CTTCAATTTGATCCACTACAACATTCAGGGATATAGGATTTGAA-CTTCATCTTGCTCCACTGCA
* * * *
50431108 ACTTTAGGAAAATAGGATTCGCCATTGTAATTTCATTCTGACCCACTGCAACTTCAAGGGTATAG
65 ACTTCAGGAAGATAAGATTCACCATTGTAATTTCATTCTGACCCACTGCAACTTCAAGGGTATAG
* * *
50431173 GAATTT-TATCTTCAATC-CGATGCACTGTAACTTTAGGGATATACGATT
130 G-ATTTGTATCTTC-ATCTTGAT-CACTGTAACTTCAGGGAGATACGATT
50431221 TGTAGCTTCA
Statistics
Matches: 341, Mismatches: 55, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
231 12 0.04
232 311 0.91
233 18 0.05
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (231 bp):
CTTCAATTTGATCCACTACAACATTCAGGGATATAGGATTTGAACTTCATCTTGCTCCACTGCAA
CTTCAGGAAGATAAGATTCACCATTGTAATTTCATTCTGACCCACTGCAACTTCAAGGGTATAGG
ATTTGTATCTTCATCTTGATCACTGTAACTTCAGGGAGATACGATTCACCATTATAATTTCATTC
CGACCCACTACAACTTCAACGGCATAGGAATTGTAT
Found at i:50431299 original size:94 final size:94
Alignment explanation
Indices: 50431195--50431409 Score: 297
Period size: 94 Copynumber: 2.3 Consensus size: 94
50431185 CAATCCGATG
* * * * * * *
50431195 CACTGTAACTTTAGGGATATACGATTTGTAGCTTCATCTTCCTCCACTGCAACTTCAGGGAGATA
1 CACTGCAACTTTAGGGGTATAAGATTTGTAGCTTCATCTTACTCCACTACAAATTCAAGGAGATA
50431260 AGACTCACTATAGTAACTTCAA-TCTGACC
66 AGACTCACTATAGTAACTTCAATTC-GACC
*
50431289 CACTGCAACTTCAGGGGTATAAGATTTGTAGCTTCATCTTACTCCACTACAAATTCAAGGAGATA
1 CACTGCAACTTTAGGGGTATAAGATTTGTAGCTTCATCTTACTCCACTACAAATTCAAGGAGATA
* * *
50431354 AGACTCGCTATGGTAAGTTCAATTCGACC
66 AGACTCACTATAGTAACTTCAATTCGACC
* *
50431383 CACTACAACTTTAGGGGTATAGGATTT
1 CACTGCAACTTTAGGGGTATAAGATTT
50431410 ATTGTTTCAC
Statistics
Matches: 106, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
94 104 0.98
95 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (94 bp):
CACTGCAACTTTAGGGGTATAAGATTTGTAGCTTCATCTTACTCCACTACAAATTCAAGGAGATA
AGACTCACTATAGTAACTTCAATTCGACC
Found at i:50431301 original size:50 final size:48
Alignment explanation
Indices: 50431238--50431398 Score: 138
Period size: 50 Copynumber: 3.4 Consensus size: 48
50431228 TCATCTTCCT
*
50431238 CCACTGCAACTTCAGGGAGATAAGACTCACTATAGTAACTTCAATCTGAC
1 CCACTACAACTTCAGGGAGATAAGACTC-CTAT-GTAACTTCAATCTGAC
* * *
50431288 CCACTGCAACTTCAGGG-GTATAAGA-T--T-TGTAGCTTC-ATCTTAC
1 CCACTACAACTTCAGGGAG-ATAAGACTCCTATGTAACTTCAATCTGAC
* * *
50431331 TCCACTACAAATTCAAGGAGATAAGACTCGCTATGGTAAGTTCAAT-TCGAC
1 -CCACTACAACTTCAGGGAGATAAGACTC-CTAT-GTAACTTCAATCT-GAC
*
50431382 CCACTACAACTTTAGGG
1 CCACTACAACTTCAGGG
50431399 GTATAGGATT
Statistics
Matches: 89, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
43 6 0.07
44 27 0.30
45 3 0.03
46 1 0.01
48 1 0.01
49 3 0.03
50 44 0.49
51 4 0.04
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (48 bp):
CCACTACAACTTCAGGGAGATAAGACTCCTATGTAACTTCAATCTGAC
Found at i:50433863 original size:13 final size:13
Alignment explanation
Indices: 50433845--50433871 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50433835 CAAGACTGCC
50433845 CTAATCCCGTTAT
1 CTAATCCCGTTAT
50433858 CTAATCCCGTTAT
1 CTAATCCCGTTAT
50433871 C
1 C
50433872 CATGACATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.07, T:0.37
Consensus pattern (13 bp):
CTAATCCCGTTAT
Found at i:50441893 original size:3 final size:3
Alignment explanation
Indices: 50441880--50441923 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
50441870 CTTATACAGT
* *
50441880 AGA ATA AGA AGA AGA AGA AGA AAA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
50441924 GAAAAGAGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:50443681 original size:25 final size:25
Alignment explanation
Indices: 50443653--50443707 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
50443643 GCATGTGATG
50443653 AAACAAAACTAAAAAATAGTCACCA
1 AAACAAAACTAAAAAATAGTCACCA
* * *
50443678 AAACAATATTAAAAAATAGTCACTA
1 AAACAAAACTAAAAAATAGTCACCA
50443703 AAACA
1 AAACA
50443708 GTCATGTGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (25 bp):
AAACAAAACTAAAAAATAGTCACCA
Found at i:50460009 original size:18 final size:17
Alignment explanation
Indices: 50459969--50460003 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
50459959 CCGACCACTA
50459969 AGAGGAATTTTTTGACC
1 AGAGGAATTTTTTGACC
50459986 AGAGGAATTTTTTGACC
1 AGAGGAATTTTTTGACC
50460003 A
1 A
50460004 CTAGGAGCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.34
Consensus pattern (17 bp):
AGAGGAATTTTTTGACC
Found at i:50462831 original size:12 final size:12
Alignment explanation
Indices: 50462811--50462843 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
50462801 CATAAAAAAC
50462811 ATTTTATTTAAT
1 ATTTTATTTAAT
*
50462823 ATTTCATTTAAT
1 ATTTTATTTAAT
50462835 -TTTTATTTA
1 ATTTTATTTA
50462844 TTTACTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (12 bp):
ATTTTATTTAAT
Found at i:50464968 original size:19 final size:19
Alignment explanation
Indices: 50464944--50464990 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
50464934 AACGTCTCTT
*
50464944 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTGCAT-CA
50464963 TTTGCATTACATTGCATCA
1 TTTGCATTACATTGCATCA
*
50464982 TATGCATTA
1 TTTGCATTA
50464991 GATTTTCACG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTGCATCA
Found at i:50468099 original size:18 final size:18
Alignment explanation
Indices: 50468068--50468116 Score: 73
Period size: 19 Copynumber: 2.7 Consensus size: 18
50468058 TCACTTGAAG
*
50468068 AAAAACAAAAAAGAA-AA
1 AAAAAGAAAAAAGAACAA
50468085 AAAAAGAAAAGAAGAACAA
1 AAAAAGAAAA-AAGAACAA
50468104 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
50468117 GAGAGGCCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 9 0.31
18 8 0.28
19 12 0.41
ACGTcount: A:0.84, C:0.04, G:0.12, T:0.00
Consensus pattern (18 bp):
AAAAAGAAAAAAGAACAA
Found at i:50469031 original size:24 final size:24
Alignment explanation
Indices: 50468999--50469056 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
50468989 ATGTCCCAAA
50468999 ATTACAGTGGACTAAACCTTGAAT
1 ATTACAGTGGACTAAACCTTGAAT
* * *
50469023 ATTACAGTGGATTGAACTTTGAAT
1 ATTACAGTGGACTAAACCTTGAAT
50469047 ATTACAGTGG
1 ATTACAGTGG
50469057 GGGCAATCCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (24 bp):
ATTACAGTGGACTAAACCTTGAAT
Found at i:50469784 original size:49 final size:49
Alignment explanation
Indices: 50469730--50469883 Score: 141
Period size: 49 Copynumber: 3.1 Consensus size: 49
50469720 CTACAACGGC
50469730 GAATCTCGTTCCCCGACATTACAATTAAAAAGATTGAAGTCGCAATGGT
1 GAATCTCGTTCCCCGACATTACAATTAAAAAGATTGAAGTCGCAATGGT
* * * ** * * ** ** * * *
50469779 GAATCTTAC-TTTCCTGGCGGTGCAGTGGATCAGATTGAAG-CTACAACGGC
1 GAATC-T-CGTTCCCCGACATTACAATTAAAAAGATTGAAGTC-GCAATGGT
50469829 GAATCTCGTTCCCCGACATTACAATTAAAAAGATTGAAGTCGCAATGGT
1 GAATCTCGTTCCCCGACATTACAATTAAAAAGATTGAAGTCGCAATGGT
50469878 GAATCT
1 GAATCT
50469884 TACTTTCCTG
Statistics
Matches: 72, Mismatches: 28, Indels: 10
0.65 0.25 0.09
Matches are distributed among these distances:
48 1 0.01
49 38 0.53
50 32 0.44
51 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (49 bp):
GAATCTCGTTCCCCGACATTACAATTAAAAAGATTGAAGTCGCAATGGT
Found at i:50469791 original size:99 final size:100
Alignment explanation
Indices: 50469566--50470232 Score: 797
Period size: 99 Copynumber: 6.7 Consensus size: 100
50469556 AAAAAGAGAA
* * * * * * * * * *
50469566 GAAGCCGTAACAGCGAATCTTACTTTTCTGGCGATGCAGTAGAGCAGATTAAAGCTACGACAGCG
1 GAAGCCGCAACGGTGAATCTTACTTTCCTGGCGGTGCAGTGGATCAGATTGAAGCTACAACGGCG
* * * *
50469631 AATCTTGCTTCCCCGACATTGCAATTTAAAATATT
66 AATCTCGCTTCCCCGACATTACAATTAAAAAGATT
* * * * * * *
50469666 AAAGCCGCAACGGCGAATCTTACTTTCCTAGAGATGCAATGGATCAAATTGAAGCTACAACGGCG
1 GAAGCCGCAACGGTGAATCTTACTTTCCTGGCGGTGCAGTGGATCAGATTGAAGCTACAACGGCG
50469731 AATCTCG-TTCCCCGACATTACAATTAAAAAGATT
66 AATCTCGCTTCCCCGACATTACAATTAAAAAGATT
* *
50469765 GAAGTCGCAATGGTGAATCTTACTTTCCTGGCGGTGCAGTGGATCAGATTGAAGCTACAACGGCG
1 GAAGCCGCAACGGTGAATCTTACTTTCCTGGCGGTGCAGTGGATCAGATTGAAGCTACAACGGCG
50469830 AATCTCG-TTCCCCGACATTACAATTAAAAAGATT
66 AATCTCGCTTCCCCGACATTACAATTAAAAAGATT
* * * * * *
50469864 GAAGTCGCAATGGTGAATCTTACTTTCCTGGCGGTGCAGTGGAGCAGATTAAAGCTACGACGGTG
1 GAAGCCGCAACGGTGAATCTTACTTTCCTGGCGGTGCAGTGGATCAGATTGAAGCTACAACGGCG
* * *
50469929 AATCTTGCTTCCCCGACATTGCAATTTAAAAGATT
66 AATCTCGCTTCCCCGACATTACAATTAAAAAGATT
* * * *
50469964 GCAGCCACAACGGTGAATTTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCG
1 GAAGCCGCAACGGTGAATCTTACTTTCCTGGCGGTGCAGTGGATCAGATTGAAGCTACAACGGCG
*
50470029 AATCTCG-TTCCCCGACATTGCAATTAAAAAGATT
66 AATCTCGCTTCCCCGACATTACAATTAAAAAGATT
* ** * * *
50470063 AAAGTTGCAACGGTGAATCTTA-TATTCCTAGCGGTGCAGTGGAGT-AGATTAAAGCTACAAAGG
1 GAAGCCGCAACGGTGAATCTTACT-TTCCTGGCGGTGCAGTGGA-TCAGATTGAAGCTACAACGG
* * *
50470126 TGAATCTTGTTTCCCCGACATTACAATTAAAAAGATT
64 CGAATCTCGCTTCCCCGACATTACAATTAAAAAGATT
** * * * *
50470163 GAAGCCGCAATAGCGAATCTTAC-TTCCTTGGTGGTGCAGTGGAACTGATTGAAGCTACAACGGC
1 GAAGCCGCAACGGTGAATCTTACTTTCC-TGGCGGTGCAGTGGATCAGATTGAAGCTACAACGGC
50470227 GAATCT
65 GAATCT
50470233 TACTTTCTAT
Statistics
Matches: 489, Mismatches: 71, Indels: 14
0.85 0.12 0.02
Matches are distributed among these distances:
98 1 0.00
99 267 0.55
100 221 0.45
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (100 bp):
GAAGCCGCAACGGTGAATCTTACTTTCCTGGCGGTGCAGTGGATCAGATTGAAGCTACAACGGCG
AATCTCGCTTCCCCGACATTACAATTAAAAAGATT
Found at i:50469934 original size:298 final size:299
Alignment explanation
Indices: 50469566--50470233 Score: 975
Period size: 298 Copynumber: 2.2 Consensus size: 299
50469556 AAAAAGAGAA
* * * * * *
50469566 GAAGCCGTAACAGCGAATCTTACTTTTCTGGCGATGCAGTAGAGCAGATTAAAGCTACGACAGCG
1 GAAGCCGCAATAGCGAATCTTACTTTCCTGGCGGTGCAGTGGAGCAGATTAAAGCTACGACGGCG
* *
50469631 AATCTTGCTTCCCCGACATTGCAATTTAAAATATTAAAGCCGCAACGGCGAATCTTACTTTCCTA
66 AATCTTGCTTCCCCGACATTGCAATTTAAAAGATTAAAGCCACAACGGCGAATCTTACTTTCCTA
50469696 GAGATGCAATGGATCAAATTGAAGCTACAACGGCGAATCTCGTTCCCCGACATTACAATTAAAAA
131 GAGATGCAATGGATCAAATTGAAGCTACAACGGCGAATCTCGTTCCCCGACATTACAATTAAAAA
* * * *
50469761 GATTGAAGTCGCAATGGTGAATCTTACT-TTCCTGGCGGTGCAGTGGA-TCAGATTGAAGCTACA
196 GATTAAAGTCGCAACGGTGAATCTTA-TATTCCTAGCGGTGCAGTGGAGT-AGATTAAAGCTACA
*
50469824 ACGGCGAATCTCG-TTCCCCGACATTACAATTAAAAAGATT
259 AAGGCGAATCTCGTTTCCCCGACATTACAATTAAAAAGATT
* * * *
50469864 GAAGTCGCAATGGTGAATCTTACTTTCCTGGCGGTGCAGTGGAGCAGATTAAAGCTACGACGGTG
1 GAAGCCGCAATAGCGAATCTTACTTTCCTGGCGGTGCAGTGGAGCAGATTAAAGCTACGACGGCG
** * * *
50469929 AATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGCAGCCACAACGGTGAATTTTACTTTCCTG
66 AATCTTGCTTCCCCGACATTGCAATTTAAAAGATTAAAGCCACAACGGCGAATCTTACTTTCCTA
* * * *
50469994 GCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTCGTTCCCCGACATTGCAATTAAAAA
131 GAGATGCAATGGATCAAATTGAAGCTACAACGGCGAATCTCGTTCCCCGACATTACAATTAAAAA
*
50470059 GATTAAAGTTGCAACGGTGAATCTTATATTCCTAGCGGTGCAGTGGAGTAGATTAAAGCTACAAA
196 GATTAAAGTCGCAACGGTGAATCTTATATTCCTAGCGGTGCAGTGGAGTAGATTAAAGCTACAAA
* *
50470124 GGTGAATCTTGTTTCCCCGACATTACAATTAAAAAGATT
261 GGCGAATCTCGTTTCCCCGACATTACAATTAAAAAGATT
* * * * *
50470163 GAAGCCGCAATAGCGAATCTTAC-TTCCTTGGTGGTGCAGTGGAACTGATTGAAGCTACAACGGC
1 GAAGCCGCAATAGCGAATCTTACTTTCC-TGGCGGTGCAGTGGAGCAGATTAAAGCTACGACGGC
50470227 GAATCTT
65 GAATCTT
50470234 ACTTTCTATC
Statistics
Matches: 328, Mismatches: 38, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
297 1 0.00
298 242 0.74
299 85 0.26
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (299 bp):
GAAGCCGCAATAGCGAATCTTACTTTCCTGGCGGTGCAGTGGAGCAGATTAAAGCTACGACGGCG
AATCTTGCTTCCCCGACATTGCAATTTAAAAGATTAAAGCCACAACGGCGAATCTTACTTTCCTA
GAGATGCAATGGATCAAATTGAAGCTACAACGGCGAATCTCGTTCCCCGACATTACAATTAAAAA
GATTAAAGTCGCAACGGTGAATCTTATATTCCTAGCGGTGCAGTGGAGTAGATTAAAGCTACAAA
GGCGAATCTCGTTTCCCCGACATTACAATTAAAAAGATT
Found at i:50469943 original size:199 final size:198
Alignment explanation
Indices: 50469580--50470232 Score: 878
Period size: 199 Copynumber: 3.3 Consensus size: 198
50469570 CCGTAACAGC
* * * * * * *
50469580 GAATCTTACTTTTCTGGCGATGCAGTAGAGCAGATTAAAGCTACGACAGCGAATCTTGCTTCCCC
1 GAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTCG-TTCCCC
* * * * * * * *
50469645 GACATTGCAATTTAAAATATTAAAGCCGCAACGGCGAATCTTACTTTCCTAGAGATGCAATGGAT
65 GACATTGCAATTAAAAAGATTAAAGTCGCAACGGTGAATCTTACTTTCCTAGCGGTGCAGTGGAG
* * * * *
50469710 CAAATTGAAGCTACAACGGCGAATCTCGTTCCCCGACATTACAATTAAAAAGATTGAAGTCGCAA
130 CAGATTAAAGCTACAACGGTGAATCTTGTTCCCCGACATTACAATTAAAAAGATTGAAGCCGCAA
50469775 TGGT
195 TGGT
*
50469779 GAATCTTACTTTCCTGGCGGTGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTCGTTCCCCG
1 GAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTCGTTCCCCG
* * * *
50469844 ACATTACAATTAAAAAGATTGAAGTCGCAATGGTGAATCTTACTTTCCTGGCGGTGCAGTGGAGC
66 ACATTGCAATTAAAAAGATTAAAGTCGCAACGGTGAATCTTACTTTCCTAGCGGTGCAGTGGAGC
* * * * *
50469909 AGATTAAAGCTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGCAGCCACAA
131 AGATTAAAGCTACAACGGTGAATCTTG-TTCCCCGACATTACAATTAAAAAGATTGAAGCCGCAA
*
50469974 CGGT
195 TGGT
*
50469978 GAATTTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTCGTTCCCCG
1 GAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTCGTTCCCCG
*
50470043 ACATTGCAATTAAAAAGATTAAAGTTGCAACGGTGAATCTTA-TATTCCTAGCGGTGCAGTGGAG
66 ACATTGCAATTAAAAAGATTAAAGTCGCAACGGTGAATCTTACT-TTCCTAGCGGTGCAGTGGAG
* *
50470107 TAGATTAAAGCTACAAAGGTGAATCTTGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCGCA
130 CAGATTAAAGCTACAACGGTGAATCTTG-TTCCCCGACATTACAATTAAAAAGATTGAAGCCGCA
* *
50470172 ATAGC
194 ATGGT
* * * *
50470177 GAATCTTAC-TTCCTTGGTGGTGCAGTGGAACTGATTGAAGCTACAACGGCGAATCT
1 GAATCTTACTTTCC-TGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCT
50470233 TACTTTCTAT
Statistics
Matches: 397, Mismatches: 54, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
198 87 0.22
199 310 0.78
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (198 bp):
GAATCTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTCGTTCCCCG
ACATTGCAATTAAAAAGATTAAAGTCGCAACGGTGAATCTTACTTTCCTAGCGGTGCAGTGGAGC
AGATTAAAGCTACAACGGTGAATCTTGTTCCCCGACATTACAATTAAAAAGATTGAAGCCGCAAT
GGT
Found at i:50470024 original size:50 final size:50
Alignment explanation
Indices: 50469776--50470239 Score: 187
Period size: 50 Copynumber: 9.3 Consensus size: 50
50469766 AAGTCGCAAT
* *
50469776 GGTGAATCTTACTTTCCTGGCGGTGCAGTGGATCAGATTGAAGCTACAAC
1 GGTGAATCTTACTTTCCTGGCGATGCAGTGGAACAGATTGAAGCTACAAC
* * * * * * ** * * *
50469826 GGCGAATC-T-CGTTCCCCGAC-ATTACAATTAAAAAGATTGAAG-TCGCAAT
1 GGTGAATCTTAC-TTTCCTGGCGA-TGCAGTGGAACAGATTGAAGCT-ACAAC
* * * *
50469875 GGTGAATCTTACTTTCCTGGCGGTGCAGTGGAGCAGATTAAAGCTACGAC
1 GGTGAATCTTACTTTCCTGGCGATGCAGTGGAACAGATTGAAGCTACAAC
* * * * * ** * * *
50469925 GGTGAATCTTGCTTCCCCGAC-ATTGCAATTTAAAAGATTGCAGCCACAAC
1 GGTGAATCTTACTTTCCTGGCGA-TGCAGTGGAACAGATTGAAGCTACAAC
* *
50469975 GGTGAATTTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAAC
1 GGTGAATCTTACTTTCCTGGCGATGCAGTGGAACAGATTGAAGCTACAAC
* * * * * ** * * * *
50470025 GGCGAATC-T-CGTTCCCCGAC-ATTGCAATTAAAAAGATTAAAGTTGCAAC
1 GGTGAATCTTAC-TTTCCTGGCGA-TGCAGTGGAACAGATTGAAGCTACAAC
* * ** * *
50470074 GGTGAATCTTA-TATTCCTAGCGGTGCAGTGGAGTAGATTAAAGCTACAAA
1 GGTGAATCTTACT-TTCCTGGCGATGCAGTGGAACAGATTGAAGCTACAAC
* * * * * ** * ** *
50470124 GGTGAATCTT-GTTTCCCCGAC-ATTACAATTAAAAAGATTGAAGCCGCAAT
1 GGTGAATCTTACTTT-CCTGGCGA-TGCAGTGGAACAGATTGAAGCTACAAC
* * * * *
50470174 AGCGAATCTTAC-TTCCTTGGTGGTGCAGTGGAACTGATTGAAGCTACAAC
1 GGTGAATCTTACTTTCC-TGGCGATGCAGTGGAACAGATTGAAGCTACAAC
*
50470224 GGCGAATCTTACTTTC
1 GGTGAATCTTACTTTC
50470240 TATCTCCCTG
Statistics
Matches: 280, Mismatches: 112, Indels: 43
0.64 0.26 0.10
Matches are distributed among these distances:
48 4 0.01
49 69 0.25
50 201 0.72
51 6 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (50 bp):
GGTGAATCTTACTTTCCTGGCGATGCAGTGGAACAGATTGAAGCTACAAC
Found at i:50470304 original size:44 final size:43
Alignment explanation
Indices: 50470240--50470920 Score: 442
Period size: 44 Copynumber: 15.8 Consensus size: 43
50470230 TCTTACTTTC
* *
50470240 TATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACCATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATA-ATCT
* * ** *** * *
50470284 CATCTCTCTGAAGTTGCAGTACAGCAGATCGTATCC--AGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATAATCT
** * * *
50470325 TATCTCCCTGAAGTTGCAGTGGAGCAGACGAAATA-AATCAACCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-ACCAT-AATCT
* *
50470369 TATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATA-ATCT
* * * *** *
50470413 TATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCC--AATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATAATCT
** * * *
50470454 TATCTCCCTGAAGTTGCAGTGGAGCAGACGAAATA-AATCAACCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-ACCAT-AATCT
* *
50470498 TATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATA-ATCT
* * * *** *
50470542 TATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCC--AATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATAATCT
** * * *
50470583 TATCTCCCTGAAGTTGCAGTGGAGCAGACGAAATA-AATCAACCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-ACCAT-AATCT
* *
50470627 TATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATA-ATCT
* * * *** *
50470671 TATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCC--AATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATAATCT
**
50470712 TATCTCCCTGAAGTTGCAGTGGAGCAGACGAAATAAACC--AATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA--TTA-AAACCATAATCT
* * * *
50470756 TATCTCTCTGAAATTGCAGTGAAGCGGATTAAAAACCATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAACCATA-ATCT
* * * *** * *
50470801 CATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCC--AGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATAATCT
* **
50470842 TATCTCCCTAAAGTTGCAGTGGAGCAGACGAAAGAAACC--AATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA--TTA-AAACCATAATCT
*
50470886 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAC
50470921 GATGAATCAT
Statistics
Matches: 479, Mismatches: 130, Indels: 59
0.72 0.19 0.09
Matches are distributed among these distances:
41 148 0.31
42 11 0.02
43 7 0.01
44 285 0.59
45 28 0.06
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.27
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCATAATCT
Found at i:50470469 original size:129 final size:129
Alignment explanation
Indices: 50470239--50470951 Score: 1151
Period size: 129 Copynumber: 5.5 Consensus size: 129
50470229 ATCTTACTTT
* *
50470239 CTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACCATAGATCTCATCTCTCTGAAGTTGCAGT
1 CTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGT
* * * *
50470304 ACAGCAGATCGTATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAATAAATCAACC
66 AGAGTAGATCGCATCCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAATAAATCAACC
*
50470368 CTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGT
1 CTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGT
50470433 AGAGTAGATCGCATCCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAATAAATCAACC
66 AGAGTAGATCGCATCCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAATAAATCAACC
*
50470497 CTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGT
1 CTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGT
50470562 AGAGTAGATCGCATCCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAATAAATCAACC
66 AGAGTAGATCGCATCCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAATAAATCAACC
*
50470626 CTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGT
1 CTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGT
* *
50470691 AGAGTAGATCGCATCCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAATAAACCAATC
66 AGAGTAGATCGCATCCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAATAAATCAACC
* * * * *
50470755 TTATCTCTCTGAAATTGCAGTGAAGCGGATTAAAAACCATAGATCTCATCTCTCTGAAGTTGCAG
1 CTATCTCCCTGAAGTTGCAGTGGAGCGGATT-AAAACCATAGATCTTATCTCTCTGAAGTTGCAG
* * * * * *
50470820 TAGAGCAGATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACGAAAGAAACCAATC
65 TAGAGTAGATCGCATCCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAATAAATCAACC
* * * *
50470885 TTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACGAT-GAATCATATAC-CTCTGAAGTTGTA
1 CTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAG-ATCTTAT-CTCTCTGAAGTTGCA
50470948 GTAG
64 GTAG
50470952 GTCGAACTAG
Statistics
Matches: 555, Mismatches: 26, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
128 1 0.00
129 432 0.78
130 122 0.22
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.27
Consensus pattern (129 bp):
CTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGATCTTATCTCTCTGAAGTTGCAGT
AGAGTAGATCGCATCCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAATAAATCAACC
Found at i:50472622 original size:12 final size:11
Alignment explanation
Indices: 50472604--50472633 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
50472594 TAAAAAACAT
50472604 TTTATTTAATA
1 TTTATTTAATA
50472615 TTTCATTTAATA
1 TTT-ATTTAATA
50472627 TTTATTT
1 TTTATTT
50472634 GTTTACTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTATTTAATA
Found at i:50474291 original size:28 final size:28
Alignment explanation
Indices: 50474251--50474308 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
50474241 ATGCTAGAAG
50474251 ATCTTCTATAGCACTAAGAAATACGCAC
1 ATCTTCTATAGCACTAAGAAATACGCAC
50474279 ATCTTCTATAGCACTAAGAAATACGCAC
1 ATCTTCTATAGCACTAAGAAATACGCAC
50474307 AT
1 AT
50474309 ACATACATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.40, C:0.24, G:0.10, T:0.26
Consensus pattern (28 bp):
ATCTTCTATAGCACTAAGAAATACGCAC
Found at i:50475010 original size:30 final size:29
Alignment explanation
Indices: 50474976--50475043 Score: 127
Period size: 30 Copynumber: 2.3 Consensus size: 29
50474966 AAAATTATGG
50474976 AAGAAAAGAATAATATTTTCATACCAGAAA
1 AAGAAAAGAATAATATTTTCATACCAG-AA
50475006 AAGAAAAGAATAATATTTTCATACCAGAA
1 AAGAAAAGAATAATATTTTCATACCAGAA
50475035 AAGAAAAGA
1 AAGAAAAGA
50475044 GAGGGGTGGA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 11 0.29
30 27 0.71
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (29 bp):
AAGAAAAGAATAATATTTTCATACCAGAA
Found at i:50475702 original size:29 final size:30
Alignment explanation
Indices: 50475646--50475702 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 30
50475636 AAACACAAAA
* *
50475646 TTAATATGAGTGTAATTTTATATATAAATT
1 TTAATATGAGTGTAATTATATACATAAATT
* *
50475676 TTAATTTG-GTGTAATTATATACGTAAA
1 TTAATATGAGTGTAATTATATACATAAA
50475703 ACTCTAATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 16 0.70
30 7 0.30
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.47
Consensus pattern (30 bp):
TTAATATGAGTGTAATTATATACATAAATT
Found at i:50477964 original size:15 final size:15
Alignment explanation
Indices: 50477939--50477971 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
50477929 GGCCCAATTA
50477939 CAACACCCAATA-CC
1 CAACACCCAATAGCC
50477953 CAACAGCCCAATAGCC
1 CAACA-CCCAATAGCC
50477969 CAA
1 CAA
50477972 AATCATCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 7 0.41
16 5 0.29
ACGTcount: A:0.42, C:0.45, G:0.06, T:0.06
Consensus pattern (15 bp):
CAACACCCAATAGCC
Found at i:50478361 original size:17 final size:17
Alignment explanation
Indices: 50478336--50478368 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
50478326 TTATTCTTTT
*
50478336 TTTGTTTGTTTTTTATG
1 TTTGCTTGTTTTTTATG
50478353 TTTGCTTGTTTTTTAT
1 TTTGCTTGTTTTTTAT
50478369 ATATATACGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.03, G:0.15, T:0.76
Consensus pattern (17 bp):
TTTGCTTGTTTTTTATG
Found at i:50479276 original size:3 final size:3
Alignment explanation
Indices: 50479270--50479320 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
50479260 TGTTGTTTAG
*
50479270 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
50479318 TAT
1 TAT
50479321 CCTTACTATT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:50479584 original size:15 final size:15
Alignment explanation
Indices: 50479561--50479592 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
50479551 TGTTTATATA
*
50479561 TTATGTTATTTTATT
1 TTATCTTATTTTATT
50479576 TTATCTTATTTTATT
1 TTATCTTATTTTATT
50479591 TT
1 TT
50479593 CCACATATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.75
Consensus pattern (15 bp):
TTATCTTATTTTATT
Found at i:50493678 original size:6 final size:6
Alignment explanation
Indices: 50493669--50493715 Score: 60
Period size: 6 Copynumber: 8.0 Consensus size: 6
50493659 TTCTTTTTGG
* * *
50493669 TTTTT- TTTTTA TTTTTA TTTTTA TTTTTA TGTTTA TGTTTA CTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
50493716 GTTATCTTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
5 5 0.13
6 33 0.87
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:50494958 original size:43 final size:43
Alignment explanation
Indices: 50494897--50494984 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
50494887 ATATTTTATC
50494897 CTTTAAGGTTAACCAAATCATTCCGCAACGGAAGTTTGAAAAA
1 CTTTAAGGTTAACCAAATCATTCCGCAACGGAAGTTTGAAAAA
50494940 CTTTAAGGTTAACCAAATCATTCCGCAACGGAAGTTTGAAAAA
1 CTTTAAGGTTAACCAAATCATTCCGCAACGGAAGTTTGAAAAA
50494983 CT
1 CT
50494985 GTAAAAATCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (43 bp):
CTTTAAGGTTAACCAAATCATTCCGCAACGGAAGTTTGAAAAA
Found at i:50501410 original size:206 final size:206
Alignment explanation
Indices: 50501056--50501447 Score: 543
Period size: 206 Copynumber: 1.9 Consensus size: 206
50501046 AACCCACGGT
* * *
50501056 CCCCAGATCTAGAATTGGGTCTAGCGACCCTCTCCAAAACTCTCAGCATGACTTAAGACAATGCA
1 CCCCAGATCCAGAATAGGGTCCAGCGACCCTCTCCAAAACTCTCAGCATGACTTAAGACAATGCA
* *
50501121 TCGTCCCTAGCCAAGCGATTTTGAGACCTAGTCTCAGTAGTACGTGAAATCGGTGTCTCACTCGT
66 TCGTCCCTAGCCAAGCGACTTTGAGACCCAGTCTCAGTAGTACGTGAAATCGGTGTCTCACTCGT
* * ** * *
50501186 ATCGAAATTTGGCATACTGCCCAAAGAGGAAGACTCAACTCGAGCCTCCTACGACGTTCACTTAT
131 ATCCAAACTCAGCATACTGCCCAAAGAGGAAGACTCAACTCAAGCCCCCTACGACGTTCACTTAT
50501251 CGACCCGTGGC
196 CGACCCGTGGC
* * * * *
50501262 CCCCAGATCCAGAATAGGGTCCAGCGACCCTCTCCAAAACTCTTAGTATGGCTT-GGAACAGTGC
1 CCCCAGATCCAGAATAGGGTCCAGCGACCCTCTCCAAAACTCTCAGCATGACTTAAG-ACAATGC
* * * * * * * *
50501326 GTCGTCCCTAGTCGAGTGGCTTTGAGACCCAGTCTTAGTAGTAGGTGAAATTGGTGTCTCACTCG
65 ATCGTCCCTAGCCAAGCGACTTTGAGACCCAGTCTCAGTAGTACGTGAAATCGGTGTCTCACTCG
*
50501391 TATCCAAACTCAGCATACTGCCCAGAGAGGAAGACTCAACTCAAGCCCCCTACGACG
130 TATCCAAACTCAGCATACTGCCCAAAGAGGAAGACTCAACTCAAGCCCCCTACGACG
50501448 CCCATCGCGT
Statistics
Matches: 160, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
205 1 0.01
206 159 0.99
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (206 bp):
CCCCAGATCCAGAATAGGGTCCAGCGACCCTCTCCAAAACTCTCAGCATGACTTAAGACAATGCA
TCGTCCCTAGCCAAGCGACTTTGAGACCCAGTCTCAGTAGTACGTGAAATCGGTGTCTCACTCGT
ATCCAAACTCAGCATACTGCCCAAAGAGGAAGACTCAACTCAAGCCCCCTACGACGTTCACTTAT
CGACCCGTGGC
Found at i:50508073 original size:22 final size:20
Alignment explanation
Indices: 50508029--50508073 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
50508019 ACAAGTTAGC
*
50508029 AAACAAATATAAATAGAAAT
1 AAACAAATATAAATAAAAAT
*
50508049 AAACAAATATTTATATAAAAAT
1 AAACAAATA--TAAATAAAAAT
50508071 AAA
1 AAA
50508074 TAAAATATAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 9 0.43
22 12 0.57
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (20 bp):
AAACAAATATAAATAAAAAT
Found at i:50508540 original size:25 final size:25
Alignment explanation
Indices: 50508511--50508561 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
50508501 AAAGGAGCCT
* *
50508511 TTAAATCAATTTGAATAAAATCAAA
1 TTAAATCAATTGGAATAAAATAAAA
**
50508536 TTAAATTGATTGGAATAAAATAAAA
1 TTAAATCAATTGGAATAAAATAAAA
50508561 T
1 T
50508562 CAAGATAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.55, C:0.04, G:0.08, T:0.33
Consensus pattern (25 bp):
TTAAATCAATTGGAATAAAATAAAA
Found at i:50516962 original size:13 final size:13
Alignment explanation
Indices: 50516944--50516969 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50516934 AATGTTAAGA
50516944 GTATAAGGAAGGC
1 GTATAAGGAAGGC
50516957 GTATAAGGAAGGC
1 GTATAAGGAAGGC
50516970 CTTAGCTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.38, T:0.15
Consensus pattern (13 bp):
GTATAAGGAAGGC
Found at i:50520002 original size:16 final size:16
Alignment explanation
Indices: 50519981--50520022 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
50519971 TTATTAAATT
*
50519981 ATATATTTTAATTATA
1 ATATATTTTAATAATA
50519997 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
50520012 AT-TATGTTTAA
1 ATATAT-TTTAA
50520023 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:50520007 original size:15 final size:15
Alignment explanation
Indices: 50519972--50520013 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
50519962 TTAAGAATTT
*
50519972 TATTAAATTAT-ATA
1 TATTTAATTATAATA
50519986 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
50520000 TATTTAATAATAAT
1 TATTTAATTATAAT
50520014 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:50520195 original size:39 final size:42
Alignment explanation
Indices: 50520150--50520250 Score: 100
Period size: 44 Copynumber: 2.4 Consensus size: 42
50520140 TTCCATTATG
50520150 CTATTACACCTCTATTC-T-ATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCATAATTCAACCAAACACAAGATTTA
* * *** *
50520189 CTATTACGCCTCCATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-CA-TA-ATTCAACCAAACACAAGATTTA
50520234 CTATTACACCTCTATTC
1 CTATTACACCTCTATTC
50520251 CAATACACCT
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
39 14 0.29
40 1 0.02
42 1 0.02
44 16 0.33
45 16 0.33
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.34
Consensus pattern (42 bp):
CTATTACACCTCTATTCATAATTCAACCAAACACAAGATTTA
Found at i:50520252 original size:45 final size:43
Alignment explanation
Indices: 50520148--50520257 Score: 111
Period size: 45 Copynumber: 2.6 Consensus size: 43
50520138 TTTTCCATTA
50520148 TGCTATTACACCTCTATT-C-T--ATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
* * * ***
50520187 TACTATTACGCCTCCATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCA-TACATTCAACCAAACACAAGA-T
50520232 TGCTATTACACCTCTATTCCAATACA
1 TGCTATTACACCTCTATTCC-ATACA
50520258 CCTCTAATCC
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
39 15 0.27
40 1 0.02
42 1 0.02
44 15 0.27
45 22 0.40
46 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
Found at i:50520259 original size:16 final size:16
Alignment explanation
Indices: 50520238--50520289 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
50520228 GATTTGCTAT
*
50520238 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
50520254 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
50520270 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
50520286 TACA
1 TACA
50520290 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.37, C:0.35, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:50522312 original size:43 final size:42
Alignment explanation
Indices: 50522258--50522488 Score: 185
Period size: 43 Copynumber: 5.4 Consensus size: 42
50522248 ATTTTTGGAA
* * *
50522258 ACAAACGCCGCTAAAGACCGGGACCCTTAGCGGCATTTTTTCC
1 ACAAACGCCGCTAAAGACC-AGACCCTTAGCGGCACTTTTCCC
* * * *
50522301 ACAAATGCCGCTAAAGAGCAAGACCTTTAGCGGCGCTTTTCCC
1 ACAAACGCCGCTAAAGA-CCAGACCCTTAGCGGCACTTTTCCC
* * * * *
50522344 AAAAATGCCGCTAAAGAGCTAGACCTTTAGTGGCACTTTTCCC
1 ACAAACGCCGCTAAAGA-CCAGACCCTTAGCGGCACTTTTCCC
* * * * *
50522387 ACAAACGCCGCTAAAAAGCCGGA-CCTTTGACGGCGCTTTTACC
1 ACAAACGCCGCTAAAGA-CCAGACCCTTAG-CGGCACTTTTCCC
* * * * * *
50522430 ACAAACGCCGCTAAAGAGCAGGATCTTTAGCGGCGCTTTTACG
1 ACAAACGCCGCTAAAGACCA-GACCCTTAGCGGCACTTTTCCC
*
50522473 ACAAACACCGCTAAAG
1 ACAAACGCCGCTAAAG
50522489 GTCATGAAAA
Statistics
Matches: 156, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
42 5 0.03
43 146 0.94
44 5 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.20
Consensus pattern (42 bp):
ACAAACGCCGCTAAAGACCAGACCCTTAGCGGCACTTTTCCC
Found at i:50522389 original size:86 final size:85
Alignment explanation
Indices: 50522260--50522488 Score: 253
Period size: 86 Copynumber: 2.7 Consensus size: 85
50522250 TTTTGGAAAC
* * * * * *
50522260 AAACGCCGCTAAAGACCGGGACCCTTAGCGGCATTTTTTCCACAAATGCCGCTAAAGAGCAAGAC
1 AAACGCCGCTAAAGAGC-AGACCTTTAGCGGCACTTTTACCACAAACGCCGCTAAAGAGCAAGAC
*
50522325 CTTT-AGCGGCGCTTTTCCCAA
65 CTTTGA-CGGCGCTTTTACCAA
* * * * **
50522346 AAATGCCGCTAAAGAGCTAGACCTTTAGTGGCACTTTTCCCACAAACGCCGCTAAAAAGCCGGAC
1 AAACGCCGCTAAAGAGC-AGACCTTTAGCGGCACTTTTACCACAAACGCCGCTAAAGAGCAAGAC
*
50522411 CTTTGACGGCGCTTTTACCAC
65 CTTTGACGGCGCTTTTACCAA
* * * *
50522432 AAACGCCGCTAAAGAGCAGGATCTTTAGCGGCGCTTTTACGACAAACACCGCTAAAG
1 AAACGCCGCTAAAGAGCA-GACCTTTAGCGGCACTTTTACCACAAACGCCGCTAAAG
50522489 GTCATGAAAA
Statistics
Matches: 119, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
85 1 0.01
86 117 0.98
87 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (85 bp):
AAACGCCGCTAAAGAGCAGACCTTTAGCGGCACTTTTACCACAAACGCCGCTAAAGAGCAAGACC
TTTGACGGCGCTTTTACCAA
Found at i:50526495 original size:7 final size:7
Alignment explanation
Indices: 50526483--50526567 Score: 55
Period size: 7 Copynumber: 11.4 Consensus size: 7
50526473 CTAACTCTTG
50526483 AAACCCT
1 AAACCCT
*
50526490 AAACCCC
1 AAACCCT
50526497 AAATCCCT
1 AAA-CCCT
*
50526505 AACCCCT
1 AAACCCT
50526512 AAATCCCCT
1 AAA--CCCT
*
50526521 AACCCCT
1 AAACCCT
50526528 AAATCCCTT
1 AAA-CCC-T
*
50526537 AACCCCT
1 AAACCCT
*
50526544 AAACCTT
1 AAACCCT
*
50526551 AAATCAC-
1 AAA-CCCT
50526558 AAACCCT
1 AAACCCT
50526565 AAA
1 AAA
50526568 TCGATACCCC
Statistics
Matches: 59, Mismatches: 12, Indels: 14
0.69 0.14 0.16
Matches are distributed among these distances:
6 2 0.03
7 36 0.61
8 12 0.20
9 9 0.15
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.18
Consensus pattern (7 bp):
AAACCCT
Found at i:50526522 original size:16 final size:16
Alignment explanation
Indices: 50526486--50526546 Score: 90
Period size: 16 Copynumber: 3.9 Consensus size: 16
50526476 ACTCTTGAAA
50526486 CCCTAAACCCC-AAAT-
1 CCCT-AACCCCTAAATC
50526501 CCCTAACCCCTAAATC
1 CCCTAACCCCTAAATC
50526517 CCCTAACCCCTAAATC
1 CCCTAACCCCTAAATC
*
50526533 CCTTAACCCCTAAA
1 CCCTAACCCCTAAA
50526547 CCTTAAATCA
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
14 6 0.14
15 8 0.19
16 29 0.67
ACGTcount: A:0.34, C:0.48, G:0.00, T:0.18
Consensus pattern (16 bp):
CCCTAACCCCTAAATC
Found at i:50526543 original size:8 final size:8
Alignment explanation
Indices: 50526486--50526548 Score: 69
Period size: 8 Copynumber: 8.1 Consensus size: 8
50526476 ACTCTTGAAA
50526486 CCCTAAAC
1 CCCTAAAC
*
50526494 CCC-AAAT
1 CCCTAAAC
50526501 CCCT-AAC
1 CCCTAAAC
50526508 CCCTAAATC
1 CCCTAAA-C
50526517 CCCT-AAC
1 CCCTAAAC
*
50526524 CCCTAAAT
1 CCCTAAAC
*
50526532 CCCTTAAC
1 CCCTAAAC
50526540 CCCTAAAC
1 CCCTAAAC
50526548 C
1 C
50526549 TTAAATCACA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
7 17 0.38
8 23 0.51
9 5 0.11
ACGTcount: A:0.33, C:0.49, G:0.00, T:0.17
Consensus pattern (8 bp):
CCCTAAAC
Found at i:50526984 original size:113 final size:114
Alignment explanation
Indices: 50526781--50527232 Score: 616
Period size: 113 Copynumber: 4.0 Consensus size: 114
50526771 TAAATTATTT
* * * *
50526781 TAAATCCCTGAGCATTAGCGGCGCTTTCTT-AAAACACCGTTAAATCCCCGAAGGCTCAGAAAAC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAAC
* * * *
50526845 GGCGCCGTTAGGCTTAGTTTTTTTTGCGGTGCTTTCCCAAAAATGTCGC
66 GGCGCCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
*
50526894 TAAAGCCCTGAGCATTAGCGGCGCTTT-TTAAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAAC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAAC
* *
50526958 GGTGCCGTTGGGCTTAGTTTTTTTTGCGGTGCTTTCCCAAAAACGCCGC
66 GGCGCCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
* * * *
50527007 TAAAGCCCTGAGTATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGATAGCTCAAAAAAC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAAC
*
50527072 GGCACCGTTGGGC----TTTTTTTTGCGGCG-TTTCCCCAAAAACGCC-C
66 GGCGCCGTTGGGCTTAGTTTTTTTTGCGGCGCTTT-CCCAAAAACGCCGC
* * * *
50527116 TAAAGCCCTGAGAATTAGCGGCGCTTTCTAAAAAATGACGCTAAATCCCCGAAAGCTCAGAAAAC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAAC
* * * *
50527181 GGAGTCGTTGGGCTTAG-GTTTTTTGCGGCGCTTTCTCAAAAACGCCGC
66 GGCGCCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
50527229 TAAA
1 TAAA
50527233 TCCCCGAAAG
Statistics
Matches: 301, Mismatches: 29, Indels: 18
0.86 0.08 0.05
Matches are distributed among these distances:
109 72 0.24
110 25 0.08
112 25 0.08
113 135 0.45
114 44 0.15
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (114 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAAC
GGCGCCGTTGGGCTTAGTTTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
Found at i:50527232 original size:222 final size:223
Alignment explanation
Indices: 50526781--50527232 Score: 617
Period size: 223 Copynumber: 2.0 Consensus size: 223
50526771 TAAATTATTT
* * *
50526781 TAAATCCCTGAGCATTAGCGGCGCTTTCTTAAAACACCGTTAAATCCCCGAAGGCTCAGAAAACG
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAACACCGCTAAATCCCCGAAGGCTCAAAAAACG
* * * * *
50526846 GCGCCGTTAGGCTTAGTTTTTTTTGCGGTGCTTTCCCAAAAATGTCGCTAAAGCCCTGAGCATTA
66 GCACCGTTAGGC-T--TTTTTTTTGCGGCGCTTTCCCAAAAACGTCCCTAAAGCCCTGAGAATTA
* * * *
50526911 GCGGCGCTTTTTAAAAACGCCGCTAAATCCTCGAAAGCTCAGAAAACGGTGCCGTTGGGCTTAGT
128 GCGGCGCTTTTAAAAAACGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGCCGTTGGGCTTAGT
* *
50526976 TTTTTTTGCGGTGCTTTCCCAAAAACGCCGC
193 GTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
* * *
50527007 TAAAGCCCTGAGTATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGATA-GCTCAAAAAA
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTT-AAAACACCGCTAAATCCCCGA-AGGCTCAAAAAA
*
50527071 CGGCACCGTTGGGC-TTTTTTTTGCGGCG-TTTCCCCAAAAACG-CCCTAAAGCCCTGAGAATTA
64 CGGCACCGTTAGGCTTTTTTTTTGCGGCGCTTT-CCCAAAAACGTCCCTAAAGCCCTGAGAATTA
* *
50527133 GCGGCGCTTTCTAAAAAATGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAG
128 GCGGCGCTTT-TAAAAAACGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGCCGTTGGGCTTAG
*
50527198 -GTTTTTTGCGGCGCTTTCTCAAAAACGCCGC
192 TGTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
50527229 TAAA
1 TAAA
50527233 TCCCCGAAAG
Statistics
Matches: 201, Mismatches: 21, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
222 63 0.31
223 70 0.35
226 28 0.14
227 39 0.19
228 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (223 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAACACCGCTAAATCCCCGAAGGCTCAAAAAACG
GCACCGTTAGGCTTTTTTTTTGCGGCGCTTTCCCAAAAACGTCCCTAAAGCCCTGAGAATTAGCG
GCGCTTTTAAAAAACGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGCCGTTGGGCTTAGTGTT
TTTTGCGGCGCTTTCCCAAAAACGCCGC
Found at i:50527250 original size:72 final size:72
Alignment explanation
Indices: 50527133--50527276 Score: 243
Period size: 72 Copynumber: 2.0 Consensus size: 72
50527123 CTGAGAATTA
*
50527133 GCGGCGCTTTCTAAAAAATGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAG
1 GCGGCGCTTTCTAAAAAACGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAG
50527198 GTTTTTT
66 GTTTTTT
* * * *
50527205 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGTGTCGTTTGGCTTAG
1 GCGGCGCTTTCTAAAAAACGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAG
50527270 GTTTTTT
66 GTTTTTT
50527277 TGCGACGTAT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (72 bp):
GCGGCGCTTTCTAAAAAACGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAG
GTTTTTT
Found at i:50527333 original size:186 final size:182
Alignment explanation
Indices: 50527024--50527423 Score: 613
Period size: 186 Copynumber: 2.2 Consensus size: 182
50527014 CTGAGTATTA
* *
50527024 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGATAGCTCAAAAAACGGCACCGTTGGGCTTTT
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCACCGTTGGGCTTTT
* * *
50527089 TTTTGCGGCGTTTCCCCAAAAACGCCCTAAAGCCCTGAGAATTAGCGGCGCTTTCTAAAAAATGA
66 TTTTGCGACGTATCCCCAAAAACGCCCTAAAGCCCTGAGAATTAGCGGCGCTTTCTAAAAAACGA
50527154 CGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAGG-TTTTTT
131 CGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAGGTTTTTTT
* * *** *
50527205 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGTGTCGTTTGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCACCGTTGGGC-T--
*
50527270 GTTTTTTTGCGACGTATCCCCAAAAACGCCACTAAAGCCCTGAGCATTAGCGGCGCTTTCTAAAA
63 -TTTTTTTGCGACGTATCCCCAAAAACGCC-CTAAAGCCCTGAGAATTAGCGGCGCTTTCTAAAA
* * *
50527335 AACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAGGTTTTTTT
126 AACGACGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAGGTTTTTTT
50527392 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCC
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCC
50527424 TGAGCATTAG
Statistics
Matches: 197, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
181 53 0.27
182 1 0.01
185 27 0.14
186 79 0.40
187 37 0.19
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (182 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCACCGTTGGGCTTTT
TTTTGCGACGTATCCCCAAAAACGCCCTAAAGCCCTGAGAATTAGCGGCGCTTTCTAAAAAACGA
CGCTAAATCCCCGAAAGCTCAGAAAACGGAGTCGTTGGGCTTAGGTTTTTTT
Found at i:50527409 original size:114 final size:114
Alignment explanation
Indices: 50527205--50527464 Score: 423
Period size: 114 Copynumber: 2.3 Consensus size: 114
50527195 TAGGTTTTTT
* *
50527205 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGTGTCGTTTGGCTTAG
1 GCGGCGCTTTCTAAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAG
50527270 GTTTTTTTGCGACGTATCCCCAAAAACGCCACTAAAGCCCTGAGCATTA
66 GTTTTTTTGCGACGTATCCCCAAAAACGCCACTAAAGCCCTGAGCATTA
50527319 GCGGCGCTTTCTAAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAG
1 GCGGCGCTTTCTAAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAG
* * ** * *
50527384 GTTTTTTTGCGGCGCT-TTCTTAAAAACGCCGCTAAATCCCTGAGCATTA
66 GTTTTTTTGCGACG-TATCCCCAAAAACGCCACTAAAGCCCTGAGCATTA
*
50527433 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCC
1 GCGGCGCTTTCTAAAAAACGCCGCTAAATCCC
50527465 TGAGCATTAG
Statistics
Matches: 136, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
114 135 0.99
115 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (114 bp):
GCGGCGCTTTCTAAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTTGGCTTAG
GTTTTTTTGCGACGTATCCCCAAAAACGCCACTAAAGCCCTGAGCATTA
Found at i:50527438 original size:41 final size:41
Alignment explanation
Indices: 50527392--50527505 Score: 228
Period size: 41 Copynumber: 2.8 Consensus size: 41
50527382 AGGTTTTTTT
50527392 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAGCATTA
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAGCATTA
50527433 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAGCATTA
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAGCATTA
50527474 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCC
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCC
50527506 CGAAAGCTCA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (41 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAGCATTA
Found at i:50527551 original size:114 final size:113
Alignment explanation
Indices: 50527433--50527686 Score: 382
Period size: 114 Copynumber: 2.2 Consensus size: 113
50527423 CTGAGCATTA
*
50527433 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGC
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTCTTAAAAACCCCGC
* *
50527498 TAAATCCCCGAAAGCTCAAAAAACGTCGTCGTTTGCCTTAGGTTTTTTT
66 TAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGCCTTAGG-TTTTTT
* * * *
50527547 GCGGCGCTTTATTAATAACGCCACTAAATCCCTGAGCATTAGTGGCGCTTTCTTAAAAACCCCGC
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTCTTAAAAACCCCGC
* * * *
50527612 TAAATCTCCGAAAGCTCAATAAATGGCGTCGTTGGGCTTAGGTTTTTT
66 TAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGCCTTAGGTTTTTT
**
50527660 GCGGCGCTTTCTGGAAAACGCCGCTAA
1 GCGGCGCTTTCTTAAAAACGCCGCTAA
50527687 TTCTTATTTT
Statistics
Matches: 124, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
113 28 0.23
114 96 0.77
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (113 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTCTTAAAAACCCCGC
TAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGCCTTAGGTTTTTT
Found at i:50527574 original size:155 final size:155
Alignment explanation
Indices: 50527291--50527617 Score: 555
Period size: 155 Copynumber: 2.1 Consensus size: 155
50527281 ACGTATCCCC
* *
50527291 AAAAACGCCACTAAAGCCCTGAGCATTAGCGGCGCTTTCTAAAAAACGCCGCTAAATCCCCGAAA
1 AAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTCTAAAAAACGCCGCTAAATCCCCGAAA
* * * *
50527356 GCTCAGAAAACGGCGTCGTTTGGCTTAGGTTTTTTTGCGGCGCTTTCTTAAAAACGCCGCTAAAT
66 GCTCAAAAAACGGCGTCGTTTGCCTTAGGTTTTTTTGCGGCGCTTTATTAAAAACGCCACTAAAT
50527421 CCCTGAGCATTAGCGGCGCTTTCTT
131 CCCTGAGCATTAGCGGCGCTTTCTT
*
50527446 AAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAA
1 AAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTCTAAAAAACGCCGCTAAATCCCCGAAA
* *
50527511 GCTCAAAAAACGTCGTCGTTTGCCTTAGGTTTTTTTGCGGCGCTTTATTAATAACGCCACTAAAT
66 GCTCAAAAAACGGCGTCGTTTGCCTTAGGTTTTTTTGCGGCGCTTTATTAAAAACGCCACTAAAT
*
50527576 CCCTGAGCATTAGTGGCGCTTTCTT
131 CCCTGAGCATTAGCGGCGCTTTCTT
*
50527601 AAAAACCCCGCTAAATC
1 AAAAACGCCGCTAAATC
50527618 TCCGAAAGCT
Statistics
Matches: 161, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
155 161 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (155 bp):
AAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTCTAAAAAACGCCGCTAAATCCCCGAAA
GCTCAAAAAACGGCGTCGTTTGCCTTAGGTTTTTTTGCGGCGCTTTATTAAAAACGCCACTAAAT
CCCTGAGCATTAGCGGCGCTTTCTT
Found at i:50531551 original size:10 final size:9
Alignment explanation
Indices: 50531499--50531550 Score: 65
Period size: 8 Copynumber: 6.0 Consensus size: 9
50531489 AAGACAGTTG
50531499 GAGAGAGAA
1 GAGAGAGAA
50531508 GAGAG-GAA
1 GAGAGAGAA
*
50531516 GAGAGAGCAT
1 GAGAGAG-AA
50531526 GAGAGA-AA
1 GAGAGAGAA
50531534 GAGAGA-AA
1 GAGAGAGAA
50531542 GAGAGAGAA
1 GAGAGAGAA
50531551 AATTATTTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
8 23 0.61
9 8 0.21
10 7 0.18
ACGTcount: A:0.54, C:0.02, G:0.42, T:0.02
Consensus pattern (9 bp):
GAGAGAGAA
Found at i:50533088 original size:104 final size:104
Alignment explanation
Indices: 50532903--50533131 Score: 363
Period size: 104 Copynumber: 2.2 Consensus size: 104
50532893 AGGACCACAC
* * * * *
50532903 GGGCATGTGTCTAGGACGTGTAACTCATTATTTACATTTTAGAACCACACGGTCGGAGGACATGG
1 GGGCGTGTGTCCAGGCCGTGTAACTCATTATTTACATTTTAGAACCACAAGGTCAGAGGACATGG
*
50532968 GCATTGTCCAGGCCGTGTGAGTTACACG-GACAAGGACAT
66 GCATTGTCCAGGCCGTGTGAGTCACACGAG-CAAGGACAT
50533007 GGGCGTGTGTCCAGGCCGTGTAACTCATTATTTAC-TTTTGAGAACCACAAGGTCAGAGGACATG
1 GGGCGTGTGTCCAGGCCGTGTAACTCATTATTTACATTTT-AGAACCACAAGGTCAGAGGACATG
50533071 GGCATTGTCCAGGCCGTGTGAGTCACACGAGCAAGGACAT
65 GGCATTGTCCAGGCCGTGTGAGTCACACGAGCAAGGACAT
*
50533111 GGGCGTGTGTCCAGGCTGTGT
1 GGGCGTGTGTCCAGGCCGTGT
50533132 GAGCCACACA
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
103 4 0.03
104 111 0.96
105 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (104 bp):
GGGCGTGTGTCCAGGCCGTGTAACTCATTATTTACATTTTAGAACCACAAGGTCAGAGGACATGG
GCATTGTCCAGGCCGTGTGAGTCACACGAGCAAGGACAT
Found at i:50533132 original size:42 final size:42
Alignment explanation
Indices: 50533063--50533169 Score: 162
Period size: 42 Copynumber: 2.6 Consensus size: 42
50533053 ACAAGGTCAG
* * *
50533063 AGGACATGGGCAT-TGTCCAGGCCGTGTGAGTCACACGAGCA
1 AGGACATGGGCGTGTGTCCAGGCCGTGTGAGCCACACAAGCA
*
50533104 AGGACATGGGCGTGTGTCCAGGCTGTGTGAGCCACACAAGCA
1 AGGACATGGGCGTGTGTCCAGGCCGTGTGAGCCACACAAGCA
*
50533146 AGGACATGGGCGTGTGTCTAGGCC
1 AGGACATGGGCGTGTGTCCAGGCC
50533170 TTATGGCTTA
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 12 0.20
42 47 0.80
ACGTcount: A:0.22, C:0.23, G:0.36, T:0.18
Consensus pattern (42 bp):
AGGACATGGGCGTGTGTCCAGGCCGTGTGAGCCACACAAGCA
Found at i:50534849 original size:20 final size:22
Alignment explanation
Indices: 50534809--50534850 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
50534799 ACTATTAATA
*
50534809 TAATAAATATAATTTATTATTT
1 TAATAAATATAATTTAATATTT
50534831 TAATAAAT-T-ATTTAATATTT
1 TAATAAATATAATTTAATATTT
50534851 CAATTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 1 0.05
22 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATAAATATAATTTAATATTT
Found at i:50534898 original size:16 final size:17
Alignment explanation
Indices: 50534862--50534898 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
50534852 AATTTTATTT
*
50534862 TAATAATAAATTTTAAA
1 TAATAATAAACTTTAAA
50534879 -AATAAT-AACTTTAAA
1 TAATAATAAACTTTAAA
50534894 TAATA
1 TAATA
50534899 TTATTCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
TAATAATAAACTTTAAA
Found at i:50535462 original size:14 final size:14
Alignment explanation
Indices: 50535443--50535481 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
50535433 ACAGAAAAAT
50535443 AAATCATTTTCCAA
1 AAATCATTTTCCAA
* *
50535457 AAATCATTTTTCGA
1 AAATCATTTTCCAA
*
50535471 AAGTCATTTTC
1 AAATCATTTTC
50535482 AATGAAACAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.18, G:0.05, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAA
Found at i:50544527 original size:30 final size:30
Alignment explanation
Indices: 50544492--50544558 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
50544482 TTCATATTCG
* *
50544492 ATGGTCAAAAATATCCATTTTCATTAATCA
1 ATGGTCAAAAACAACCATTTTCATTAATCA
* * * *
50544522 ATGGTCAAAACCAACCCTTTTGATTAATCG
1 ATGGTCAAAAACAACCATTTTCATTAATCA
50544552 ATGGTCA
1 ATGGTCA
50544559 TCACCATCGC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (30 bp):
ATGGTCAAAAACAACCATTTTCATTAATCA
Found at i:50544593 original size:29 final size:28
Alignment explanation
Indices: 50544551--50544692 Score: 108
Period size: 29 Copynumber: 4.9 Consensus size: 28
50544541 TTGATTAATC
* *
50544551 GATGGTCATCACCATCGCTTTTCATAGTT
1 GATGGTCGTAACCATC-CTTTTCATAGTT
* * *
50544580 GATGGTCGTTACCATCCCTTTTCATAATC
1 GATGGTCGTAACCAT-CCTTTTCATAGTT
* * *
50544609 AATAGTCG-AAGCTATCCGTTTTCATA-TT
1 GATGGTCGTAA-CCATCC-TTTTCATAGTT
50544637 CGATGGTCGTAACCATCCTTGTTCATAGTT
1 -GATGGTCGTAACCATCCTT-TTCATAGTT
* * *
50544667 GATTGTAGTCACCATCCCTTTTCATA
1 GATGGTCGTAACCAT-CCTTTTCATA
50544693 ATCGATAGCC
Statistics
Matches: 90, Mismatches: 15, Indels: 16
0.74 0.12 0.13
Matches are distributed among these distances:
28 6 0.07
29 75 0.83
30 9 0.10
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (28 bp):
GATGGTCGTAACCATCCTTTTCATAGTT
Found at i:50544663 original size:87 final size:87
Alignment explanation
Indices: 50544546--50544727 Score: 267
Period size: 87 Copynumber: 2.1 Consensus size: 87
50544536 CCCTTTTGAT
* * *
50544546 TAATCGATGGTCATCACCATCGCTTTTCATAGTTGATGGTCGTTACCATCCCTTTTCATAATCAA
1 TAATCGATGGTCATAACCATCGCTTTTCATAGTTGATGGTAGTCACCATCCCTTTTCATAATCAA
*
50544611 TAGTCGAAGCTATCCGTTTTCA
66 TAGCCGAAGCTATCCGTTTTCA
* * * *
50544633 TATTCGATGGTCGTAACCATC-CTTGTTCATAGTTGATTGTAGTCACCATCCCTTTTCATAATCG
1 TAATCGATGGTCATAACCATCGCTT-TTCATAGTTGATGGTAGTCACCATCCCTTTTCATAATCA
*
50544697 ATAGCCGAAGCTATCCTTTTTCA
65 ATAGCCGAAGCTATCCGTTTTCA
50544720 TAATCGAT
1 TAATCGAT
50544728 ATCTGAAGCT
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
86 3 0.04
87 81 0.96
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (87 bp):
TAATCGATGGTCATAACCATCGCTTTTCATAGTTGATGGTAGTCACCATCCCTTTTCATAATCAA
TAGCCGAAGCTATCCGTTTTCA
Found at i:50544712 original size:29 final size:29
Alignment explanation
Indices: 50544593--50544808 Score: 141
Period size: 29 Copynumber: 7.4 Consensus size: 29
50544583 GGTCGTTACC
* *
50544593 ATCCCTTTTCATAATCAATAGTCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* * * * *
50544622 ATCCGTTTTCATATTCGATGGTCGTAA-CC
1 ATCCCTTTTCATAATCGATAGCCG-AAGCT
* * * ** * *
50544651 AT-CCTTGTTCATAGTTGATTGTAGTCA-CC
1 ATCCCTT-TTCATAATCGATAGCCG-AAGCT
50544680 ATCCCTTTTCATAATCGATAGCCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* * *
50544709 ATCCTTTTTCATAATCGATATCTGAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* * * *
50544738 ATCCCTTTTCATAATTGATAGACAAAGAT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* * *
50544767 ATCTCTTTTCATTAATCGATAGCCAAAGGT
1 ATCCCTTTTCA-TAATCGATAGCCGAAGCT
* *
50544797 GTCCCATTTCAT
1 ATCCCTTTTCAT
50544809 TGGTCGATGA
Statistics
Matches: 147, Mismatches: 35, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
28 4 0.03
29 114 0.78
30 29 0.20
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCCGAAGCT
Found at i:50554640 original size:21 final size:21
Alignment explanation
Indices: 50554611--50554657 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
50554601 TACATTAGGT
*
50554611 TTAACATATATAATATAA-TAA
1 TTAAAATAT-TAATATAATTAA
**
50554632 TTAAAATATTTTTATAATTAA
1 TTAAAATATTAATATAATTAA
50554653 TTAAA
1 TTAAA
50554658 CTTTTATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
TTAAAATATTAATATAATTAA
Found at i:50559610 original size:36 final size:36
Alignment explanation
Indices: 50559559--50559631 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
50559549 CTTTTCTATT
*
50559559 TGCATCAAAATGCAACCAAGACCACTATGTGAAGCA
1 TGCATCAAAACGCAACCAAGACCACTATGTGAAGCA
*
50559595 TGCATCAAAACGCAACCAAGACCATTATGTGAAGCA
1 TGCATCAAAACGCAACCAAGACCACTATGTGAAGCA
50559631 T
1 T
50559632 CACTATATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.41, C:0.25, G:0.16, T:0.18
Consensus pattern (36 bp):
TGCATCAAAACGCAACCAAGACCACTATGTGAAGCA
Found at i:50560279 original size:31 final size:31
Alignment explanation
Indices: 50560241--50560303 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
50560231 TTATTTCACC
50560241 TTCAATTGGTAATAACTAGATCTCAGATCAA
1 TTCAATTGGTAATAACTAGATCTCAGATCAA
50560272 TTCAATTGGTAATAACTAGATCTCAGATCAA
1 TTCAATTGGTAATAACTAGATCTCAGATCAA
50560303 T
1 T
50560304 CTTAGATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (31 bp):
TTCAATTGGTAATAACTAGATCTCAGATCAA
Found at i:50560820 original size:14 final size:15
Alignment explanation
Indices: 50560794--50560822 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
50560784 GACCAACTGG
50560794 TTTCATGCTTTTCAC
1 TTTCATGCTTTTCAC
50560809 TTTCAT-CTTTTCAC
1 TTTCATGCTTTTCAC
50560823 CATTTGAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.14, C:0.28, G:0.03, T:0.55
Consensus pattern (15 bp):
TTTCATGCTTTTCAC
Found at i:50567253 original size:27 final size:28
Alignment explanation
Indices: 50567208--50567263 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
50567198 TTTATTTAAA
* * * *
50567208 AAAAATTTAGTTTCTATTTTTTAGATTT
1 AAAAATTTAATTTCAATTTATTAAATTT
50567236 AAAAATTTAATTT-AATTTATTAAATTT
1 AAAAATTTAATTTCAATTTATTAAATTT
50567263 A
1 A
50567264 TTGATGTGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 12 0.50
28 12 0.50
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.54
Consensus pattern (28 bp):
AAAAATTTAATTTCAATTTATTAAATTT
Found at i:50567941 original size:27 final size:27
Alignment explanation
Indices: 50567903--50567970 Score: 86
Period size: 26 Copynumber: 2.5 Consensus size: 27
50567893 AGGTATGTTT
*
50567903 GTTAGTATTTTTTTTTAATTTA-AAGGG
1 GTTAGTATTTTTTTTTAA-ATAGAAGGG
50567930 GTTAGTA-TTTTTTTTAAATAGAAGGG
1 GTTAGTATTTTTTTTTAAATAGAAGGG
*
50567956 ATTAGTTATTTTTTT
1 GTTAG-TATTTTTTT
50567971 ATGTTGTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
25 2 0.06
26 19 0.53
27 9 0.25
28 6 0.17
ACGTcount: A:0.26, C:0.00, G:0.18, T:0.56
Consensus pattern (27 bp):
GTTAGTATTTTTTTTTAAATAGAAGGG
Found at i:50568203 original size:102 final size:104
Alignment explanation
Indices: 50567992--50568363 Score: 355
Period size: 102 Copynumber: 3.5 Consensus size: 104
50567982 TTAGTAATTA
*
50567992 TTATAAATTGTTTGTGTTTAGTTTAGTGTT-TTGTGATTTTTTATGAATGTAAATTTTTTTGTTT
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTTATTGTGATTTTTTATGAATGTAAA------TATTT
* *
50568056 TTCTAAATGATTTTAAAGTTATTTTGTTTGTAATTTATAATTAGG
60 TTCTAAATGATTTGAAAGTTATTTTGTTAGTAATTTATAATTAGG
* *
50568101 TTATATATTGTTTGTGTTTAGTTTAGTGTTTATTGTGATTTTTTATTAATGTAAA-ATTTTT-T-
1 TTATAAATTGTTTGTGTTTAGTTTAGTG-TTATTGTGATTTTTTATGAATGTAAATATTTTTCTA
* *
50568163 AATTATTTGAAAGTTATTTTGTTAGTAATTTATTATTAGG
65 AATGATTTGAAAGTTATTTTGTTAGTAATTTATAATTAGG
* * * *
50568203 TTATAAATTTTTTGTGTATAGTTTAGTGCTTATTGTGATTTTTTATGAATGTAATTTTTTTTGTG
1 TTATAAATTGTTTGTGTTTAGTTTAGTG-TTATTGTGATTTTTTATGAATGTAA------ATAT-
* * ** * *
50568268 TTTTTTAAATTATTTTTAAGTTATTTTGTCAGTAATTTATGATTAGG
58 TTTTCTAAATGATTTGAAAGTTATTTTGTTAGTAATTTATAATTAGG
* * * * *
50568315 TTATAAATT-ATT-TGTTTAGTTTAATGTAATT-TTATTTGTTAT-AATGTAA
1 TTATAAATTGTTTGTGTTTAGTTTAGTGTTATTGTGATTTTTTATGAATGTAA
50568364 TTTTATTTGT
Statistics
Matches: 227, Mismatches: 24, Indels: 26
0.82 0.09 0.09
Matches are distributed among these distances:
102 85 0.37
103 1 0.00
104 5 0.02
107 7 0.03
108 9 0.04
109 32 0.14
110 18 0.08
111 25 0.11
112 45 0.20
ACGTcount: A:0.26, C:0.01, G:0.15, T:0.59
Consensus pattern (104 bp):
TTATAAATTGTTTGTGTTTAGTTTAGTGTTATTGTGATTTTTTATGAATGTAAATATTTTTCTAA
ATGATTTGAAAGTTATTTTGTTAGTAATTTATAATTAGG
Found at i:50568361 original size:20 final size:20
Alignment explanation
Indices: 50568336--50568374 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
50568326 TTGTTTAGTT
50568336 TAATGTAATTTTATTTGTTA
1 TAATGTAATTTTATTTGTTA
50568356 TAATGTAATTTTATTTGTT
1 TAATGTAATTTTATTTGTT
50568375 TTTTATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (20 bp):
TAATGTAATTTTATTTGTTA
Found at i:50568396 original size:112 final size:112
Alignment explanation
Indices: 50568157--50568378 Score: 305
Period size: 112 Copynumber: 2.0 Consensus size: 112
50568147 TAATGTAAAA
** * * *
50568157 TTTTTT-AATTATTTGAAAGTTATTTTGTTAGTAATTTATTATTAGGTTATAAATTTTTTGTGTA
1 TTTTTTAAATTATTTTTAAGTTATTTTGTCAGTAATTTATGATTAGGTTATAAATTATTTGTGTA
* * * *
50568221 TAGTTTAGTGCTTATTGTGATTTTTTATGAATGTAATTTTTTTTGTG
66 TAGTTTAATGCTAATTGTGATTTGTTATGAATGTAATTTTATTTGTG
50568268 TTTTTTAAATTATTTTTAAGTTATTTTGTCAGTAATTTATGATTAGGTTATAAATTATTTGT-T-
1 TTTTTTAAATTATTTTTAAGTTATTTTGTCAGTAATTTATGATTAGGTTATAAATTATTTGTGTA
*
50568331 TAGTTTAATG-TAATT-TTATTTGTTAT-AATGTAATTTTATTTGT-
66 TAGTTTAATGCTAATTGTGATTTGTTATGAATGTAATTTTATTTGTG
50568374 TTTTT
1 TTTTT
50568379 ATTTATTTGA
Statistics
Matches: 100, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
106 5 0.05
107 16 0.16
108 9 0.09
109 4 0.04
110 9 0.09
111 7 0.07
112 50 0.50
ACGTcount: A:0.26, C:0.01, G:0.13, T:0.60
Consensus pattern (112 bp):
TTTTTTAAATTATTTTTAAGTTATTTTGTCAGTAATTTATGATTAGGTTATAAATTATTTGTGTA
TAGTTTAATGCTAATTGTGATTTGTTATGAATGTAATTTTATTTGTG
Found at i:50571497 original size:27 final size:27
Alignment explanation
Indices: 50571453--50571504 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
50571443 CAAAACTGCT
*
50571453 TCACTGGTGCCACTTATCAGATAGGGG
1 TCACTGGTGCCACCTATCAGATAGGGG
* *
50571480 TCACTGGTGCCGCCTATCAGGTAGG
1 TCACTGGTGCCACCTATCAGATAGG
50571505 CACCACCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (27 bp):
TCACTGGTGCCACCTATCAGATAGGGG
Found at i:50572851 original size:29 final size:31
Alignment explanation
Indices: 50572818--50572875 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
50572808 TTATTTAGGA
50572818 TTAAAATA-ATAT-AATT-TTTTGTTATAACT
1 TTAAAATACATATAAATTATTTT-TTATAACT
50572847 TTAAAATACATATAAATTATTTTTTATAA
1 TTAAAATACATATAAATTATTTTTTATAA
50572876 TATGTATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 8 0.31
30 4 0.15
31 10 0.38
32 4 0.15
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (31 bp):
TTAAAATACATATAAATTATTTTTTATAACT
Found at i:50574385 original size:18 final size:18
Alignment explanation
Indices: 50574359--50574393 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50574349 AAACTATTTT
50574359 CTTAAAATTAGAATTATG
1 CTTAAAATTAGAATTATG
* *
50574377 CTTATAATTATAATTAT
1 CTTAAAATTAGAATTAT
50574394 TATATTTAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.46
Consensus pattern (18 bp):
CTTAAAATTAGAATTATG
Found at i:50576241 original size:21 final size:20
Alignment explanation
Indices: 50576191--50576241 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
50576181 CATTCCTCCC
* *
50576191 TAATTCTTATGATATTTTTT
1 TAATTATTATGATATTTTCT
*
50576211 TAA-AATTTATGATATTTTCCT
1 TAATTA-TTATGATATTTT-CT
50576232 TAATTATTAT
1 TAATTATTAT
50576242 TAATTTATGT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
20 15 0.62
21 8 0.33
22 1 0.04
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (20 bp):
TAATTATTATGATATTTTCT
Found at i:50585767 original size:3 final size:3
Alignment explanation
Indices: 50585761--50585821 Score: 63
Period size: 3 Copynumber: 20.7 Consensus size: 3
50585751 AACCTACTAC
* * * *
50585761 TAA TAA TAA GAGA -AA TAA AAA TAA TAA AAA TAG TAA -AA TAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
50585805 TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TA
50585822 GAAATGTTAG
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
2 3 0.06
3 44 0.92
4 1 0.02
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (3 bp):
TAA
Found at i:50585887 original size:13 final size:13
Alignment explanation
Indices: 50585871--50585906 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
50585861 TAAAATAAGT
*
50585871 AAATAAGTAAATA
1 AAATAAATAAATA
50585884 AAATAAATAAATA
1 AAATAAATAAATA
*
50585897 AAATTAATAA
1 AAATAAATAA
50585907 GGGAGGAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (13 bp):
AAATAAATAAATA
Found at i:50592443 original size:69 final size:69
Alignment explanation
Indices: 50592300--50592775 Score: 692
Period size: 69 Copynumber: 6.9 Consensus size: 69
50592290 CACAGTTTTA
* * * * *
50592300 AAATCAGCCCTATACAACAACACATTAAGAACTTAAATCGAA--TAAATGAACACATTTTAAAGA
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAACGTAAATGAACACATTTTAAAGA
*
50592363 ATAC
66 CTAC
* *
50592367 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAATGTAAATTAACACATTTTAAAGA
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAACGTAAATGAACACATTTTAAAGA
50592432 CTAC
66 CTAC
* * *
50592436 AAATCAGCCCTTTACAGCAGCACATTAAGCACTTAAATCGACCGTAAACGAACACATTTTAAAGA
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAACGTAAATGAACACATTTTAAAGA
50592501 CTAC
66 CTAC
* * * * *
50592505 AAATCAGCCCTTTACAGTAGCACATTAAGCATTTAAATCGAATGTAGATTAACATATTTTAAATG
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAACGTAAATGAACACATTTTAAA-G
50592570 -CTAC
65 ACTAC
* *
50592574 -AATCAGCCCTTTACAGCAGCACCTTAAGCATTTTAAA-CGAATGTAAATGAACACATTTTAAAG
1 AAATCAGCCCTTTACAGCAGCACATTAAGCA-TTTAAATCGAACGTAAATGAACACATTTTAAAG
50592637 ACTAC
65 ACTAC
* * * *
50592642 ATACCAGCCCTTTACAACAGCACATTAAGCATTTAAATCGAACGTAAATCAACACATTTTAAAGA
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAACGTAAATGAACACATTTTAAAGA
50592707 CTAC
66 CTAC
*
50592711 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATAGAACGTAAATGAACACATTTTAAAGA
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAACGTAAATGAACACATTTTAAAGA
50592776 TGCTGAATCT
Statistics
Matches: 366, Mismatches: 36, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
67 38 0.10
68 60 0.16
69 267 0.73
70 1 0.00
ACGTcount: A:0.43, C:0.21, G:0.11, T:0.26
Consensus pattern (69 bp):
AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAACGTAAATGAACACATTTTAAAGA
CTAC
Found at i:50592605 original size:206 final size:206
Alignment explanation
Indices: 50592300--50592775 Score: 710
Period size: 206 Copynumber: 2.3 Consensus size: 206
50592290 CACAGTTTTA
* * * * *
50592300 AAATCAGCCCTATACAACAACACATTAAGAACTTAAATCGAA-TAAATGAACACATTTTAAAGAA
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAAGTAAATGAACACATTTTAAAGAA
*
50592364 TACAAATCAGCCCTTTACAGCAGCACATTAAGCA-TTTAAATCGAATGTAAATTAACACATTTTA
66 TACAAATCAGCCCTTTACAGCAGCACATTAAGCATTTTAAA-CGAATGTAAATGAACACATTTTA
* * *
50592428 AAGACTACAAATCAGCCCTTTACAGCAGCACATTAAGCACTTAAATCGACCGTAAA-CGAACACA
130 AAGACTACAAACCAGCCCTTTACAACAGCACATTAAGCACTTAAATCGAACGTAAATC-AACACA
50592492 TTTTAAAGACTAC
194 TTTTAAAGACTAC
* * * *
50592505 AAATCAGCCCTTTACAGTAGCACATTAAGCATTTAAATCGAATGTAGATTAACATATTTTAAATG
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAA-GTAAATGAACACATTTTAAA-G
* *
50592570 -CTAC-AATCAGCCCTTTACAGCAGCACCTTAAGCATTTTAAACGAATGTAAATGAACACATTTT
64 AATACAAATCAGCCCTTTACAGCAGCACATTAAGCATTTTAAACGAATGTAAATGAACACATTTT
* *
50592633 AAAGACTACATACCAGCCCTTTACAACAGCACATTAAGCATTTAAATCGAACGTAAATCAACACA
129 AAAGACTACAAACCAGCCCTTTACAACAGCACATTAAGCACTTAAATCGAACGTAAATCAACACA
50592698 TTTTAAAGACTAC
194 TTTTAAAGACTAC
*
50592711 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATAGAACGTAAATGAACACATTTTAAAGA
1 AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAA-GTAAATGAACACATTTTAAAGA
50592776 TGCTGAATCT
Statistics
Matches: 242, Mismatches: 23, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
205 37 0.15
206 178 0.74
207 26 0.11
208 1 0.00
ACGTcount: A:0.43, C:0.21, G:0.11, T:0.26
Consensus pattern (206 bp):
AAATCAGCCCTTTACAGCAGCACATTAAGCATTTAAATCGAAGTAAATGAACACATTTTAAAGAA
TACAAATCAGCCCTTTACAGCAGCACATTAAGCATTTTAAACGAATGTAAATGAACACATTTTAA
AGACTACAAACCAGCCCTTTACAACAGCACATTAAGCACTTAAATCGAACGTAAATCAACACATT
TTAAAGACTAC
Found at i:50593354 original size:18 final size:19
Alignment explanation
Indices: 50593331--50593367 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
50593321 TTTACTGAAC
50593331 ATGTAACT-ATCCATTCAT
1 ATGTAACTAATCCATTCAT
50593349 ATGTAACTAATCCATTCAT
1 ATGTAACTAATCCATTCAT
50593368 GTGCAACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.35, C:0.22, G:0.05, T:0.38
Consensus pattern (19 bp):
ATGTAACTAATCCATTCAT
Found at i:50599557 original size:46 final size:44
Alignment explanation
Indices: 50599470--50599564 Score: 104
Period size: 45 Copynumber: 2.1 Consensus size: 44
50599460 CGAAATGAAT
*
50599470 AAAAACGGAGAAATAAGAAACATTTAGGAATGATTATGGTTTTCTC
1 AAAAACGGAGAAATAAGAAACATTTAGAAATGATTATGG-TTTC-C
* * *
50599516 AAAAATGGAGAAAT-TGAATCATTTAGAAATGAATT-TAGGTTTCC
1 AAAAACGGAGAAATAAGAAACATTTAGAAATG-ATTAT-GGTTTCC
50599560 AAAAA
1 AAAAA
50599565 ATAGAAATGG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
44 6 0.14
45 19 0.44
46 18 0.42
ACGTcount: A:0.46, C:0.07, G:0.18, T:0.28
Consensus pattern (44 bp):
AAAAACGGAGAAATAAGAAACATTTAGAAATGATTATGGTTTCC
Found at i:50602574 original size:24 final size:24
Alignment explanation
Indices: 50602547--50602595 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
50602537 ATTAGTTTTT
50602547 ATAACAATGATCGGAAATAAATTC
1 ATAACAATGATCGGAAATAAATTC
50602571 ATAACAATGATCGGAAATAAATTC
1 ATAACAATGATCGGAAATAAATTC
50602595 A
1 A
50602596 CTGGCAATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.12, G:0.12, T:0.24
Consensus pattern (24 bp):
ATAACAATGATCGGAAATAAATTC
Found at i:50604371 original size:68 final size:68
Alignment explanation
Indices: 50604241--50604371 Score: 181
Period size: 68 Copynumber: 1.9 Consensus size: 68
50604231 GGAAAGAAGT
* * * * *
50604241 TGTAACCCCTCAAACTGTGCCTAGACATTACAACCCAATTTAAGCGATTACATAGGCTATAGACT
1 TGTAACCCCTCAAACCGGGCCTAGACATTACAACCCAATCTAAGCGATTACAGAGGCCATAGACT
50604306 AAA
66 AAA
* * * *
50604309 TGTAACCCTTCAAACCGGGCCTAGACATTACATCCCAATCTAAGTGATTACAGGGGCCATAGA
1 TGTAACCCCTCAAACCGGGCCTAGACATTACAACCCAATCTAAGCGATTACAGAGGCCATAGA
50604372 AATGGTGAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
68 54 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (68 bp):
TGTAACCCCTCAAACCGGGCCTAGACATTACAACCCAATCTAAGCGATTACAGAGGCCATAGACT
AAA
Found at i:50611083 original size:94 final size:94
Alignment explanation
Indices: 50610919--50611119 Score: 278
Period size: 94 Copynumber: 2.1 Consensus size: 94
50610909 GGTTATGTGG
* * * * *
50610919 CTGGACACACGGTCATGTCCCAGGTCGTGTGCACAAGGGAGTGTTCTACAATGAGTTATACGGTG
1 CTGGACACACGGGCATATCCCAAGTCATGTGCACAAGGGAGTGTTCTACAATGAGTTACACGGTG
50610984 TGAAGACATAGCTGTGTAAGTCACACGAC
66 TGAAGACATAGCTGTGTAAGTCACACGAC
* * * * *
50611013 C-GAGACACACGGGCGTATCCCAAGTCATGTGCACAAGGTAGTGTTCTATAGTGAGTTACATGGT
1 CTG-GACACACGGGCATATCCCAAGTCATGTGCACAAGGGAGTGTTCTACAATGAGTTACACGGT
* *
50611077 GTGAAGACATGGCTGTGTAGGTCACACGAC
65 GTGAAGACATAGCTGTGTAAGTCACACGAC
50611107 CTGGACACACGGG
1 CTGGACACACGGG
50611120 TGTGTCCTTG
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
93 1 0.01
94 91 0.98
95 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (94 bp):
CTGGACACACGGGCATATCCCAAGTCATGTGCACAAGGGAGTGTTCTACAATGAGTTACACGGTG
TGAAGACATAGCTGTGTAAGTCACACGAC
Found at i:50611687 original size:19 final size:19
Alignment explanation
Indices: 50611658--50611704 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 19
50611648 ATTCACCCCA
50611658 TCCCTTTCCTTTTTCCCTCT
1 TCCCTTTCCTTTTTCCCT-T
50611678 TCCC-TTCCTTTTTCCCTT
1 TCCCTTTCCTTTTTCCCTT
50611696 TCCCGTTTC
1 TCCC-TTTC
50611705 TATCGTCCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.20
19 13 0.52
20 7 0.28
ACGTcount: A:0.00, C:0.45, G:0.02, T:0.53
Consensus pattern (19 bp):
TCCCTTTCCTTTTTCCCTT
Found at i:50612065 original size:9 final size:9
Alignment explanation
Indices: 50612044--50612113 Score: 54
Period size: 9 Copynumber: 7.6 Consensus size: 9
50612034 CTATTTCAAT
50612044 TTTTTATTA
1 TTTTTATTA
50612053 TTTTT-TTA
1 TTTTTATTA
*
50612061 CTTTTATTA
1 TTTTTATTA
*
50612070 TATTTTCTTA
1 T-TTTTATTA
* *
50612080 GTATTATTA
1 TTTTTATTA
50612089 TTTTTCCTATTA
1 -TTTT--TATTA
50612101 TTTTTATT-
1 TTTTTATTA
50612109 TTTTT
1 TTTTT
50612114 TGCACTAGCT
Statistics
Matches: 48, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
8 12 0.25
9 18 0.38
10 9 0.19
11 4 0.08
12 5 0.10
ACGTcount: A:0.19, C:0.06, G:0.01, T:0.74
Consensus pattern (9 bp):
TTTTTATTA
Found at i:50612065 original size:17 final size:18
Alignment explanation
Indices: 50612045--50612094 Score: 66
Period size: 19 Copynumber: 2.8 Consensus size: 18
50612035 TATTTCAATT
50612045 TTTTATTATTTTT-TTAC
1 TTTTATTATTTTTCTTAC
*
50612062 TTTTATTATATTTTCTTAG
1 TTTTATTAT-TTTTCTTAC
*
50612081 TATTATTATTTTTC
1 TTTTATTATTTTTC
50612095 CTATTATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 9 0.31
18 9 0.31
19 11 0.38
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.72
Consensus pattern (18 bp):
TTTTATTATTTTTCTTAC
Found at i:50612086 original size:19 final size:18
Alignment explanation
Indices: 50612047--50612111 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 18
50612037 TTTCAATTTT
*
50612047 TTATTATTTTT-TTACTT
1 TTATTATTTTTCTTACTA
*
50612064 TTATTATATTTTCTTAGTA
1 TTATTAT-TTTTCTTACTA
* *
50612083 TTATTATTTTTCCTATTA
1 TTATTATTTTTCTTACTA
*
50612101 TTTTTATTTTT
1 TTATTATTTTT
50612112 TTTGCACTAG
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
17 7 0.17
18 23 0.56
19 11 0.27
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.72
Consensus pattern (18 bp):
TTATTATTTTTCTTACTA
Found at i:50614164 original size:134 final size:134
Alignment explanation
Indices: 50614008--50614275 Score: 536
Period size: 134 Copynumber: 2.0 Consensus size: 134
50613998 AAAAGCATCT
50614008 GGAATAAATATCTTTAACATTATTAATAATTTGATAAACTTTAATATATAATTATATTATTTATA
1 GGAATAAATATCTTTAACATTATTAATAATTTGATAAACTTTAATATATAATTATATTATTTATA
50614073 ATTTATATATCAATTTTTTATCAACTTAGCTTAGAATTAGGATTAATTAGGAATTTTTTATTTCT
66 ATTTATATATCAATTTTTTATCAACTTAGCTTAGAATTAGGATTAATTAGGAATTTTTTATTTCT
50614138 GCAC
131 GCAC
50614142 GGAATAAATATCTTTAACATTATTAATAATTTGATAAACTTTAATATATAATTATATTATTTATA
1 GGAATAAATATCTTTAACATTATTAATAATTTGATAAACTTTAATATATAATTATATTATTTATA
50614207 ATTTATATATCAATTTTTTATCAACTTAGCTTAGAATTAGGATTAATTAGGAATTTTTTATTTCT
66 ATTTATATATCAATTTTTTATCAACTTAGCTTAGAATTAGGATTAATTAGGAATTTTTTATTTCT
50614272 GCAC
131 GCAC
50614276 AATAAAATAA
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
134 134 1.00
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.47
Consensus pattern (134 bp):
GGAATAAATATCTTTAACATTATTAATAATTTGATAAACTTTAATATATAATTATATTATTTATA
ATTTATATATCAATTTTTTATCAACTTAGCTTAGAATTAGGATTAATTAGGAATTTTTTATTTCT
GCAC
Done.