Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 171 of 205
Found at i:50861233 original size:16 final size:17
Alignment explanation
Indices: 50861208--50861240 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
50861198 TTGGGACGAT
*
50861208 AAAATTATTT-AATTGG
1 AAAATCATTTAAATTGG
50861224 AAAATCATTTAAATTGG
1 AAAATCATTTAAATTGG
50861241 TTAAAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.45, C:0.03, G:0.12, T:0.39
Consensus pattern (17 bp):
AAAATCATTTAAATTGG
Found at i:50873533 original size:56 final size:56
Alignment explanation
Indices: 50873466--50873575 Score: 211
Period size: 56 Copynumber: 2.0 Consensus size: 56
50873456 AAGCGTTTTG
50873466 AGTATTTCATTTTTAATATGATTTTAACTTTTTATAATATTAAATTAAGTTATTTC
1 AGTATTTCATTTTTAATATGATTTTAACTTTTTATAATATTAAATTAAGTTATTTC
*
50873522 AGTATTTCATTTTTAATATTATTTTAACTTTTTATAATATTAAATTAAGTTATT
1 AGTATTTCATTTTTAATATGATTTTAACTTTTTATAATATTAAATTAAGTTATT
50873576 GCCATTAATA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.56
Consensus pattern (56 bp):
AGTATTTCATTTTTAATATGATTTTAACTTTTTATAATATTAAATTAAGTTATTTC
Found at i:50873569 original size:21 final size:20
Alignment explanation
Indices: 50873531--50873569 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
50873521 CAGTATTTCA
**
50873531 TTTTTAATATTATTTTAACT
1 TTTTTAATATTAAATTAACT
50873551 TTTTATAATATTAAATTAA
1 TTTT-TAATATTAAATTAA
50873570 GTTATTGCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTTAATATTAAATTAACT
Found at i:50875765 original size:31 final size:32
Alignment explanation
Indices: 50875730--50875792 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
50875720 AATAAAAGGA
* *
50875730 TAGGTGCCAAATTAAG-AAAAAGTGTCAAGTT
1 TAGGTACCAAATTAAGAAAAAAGTATCAAGTT
* *
50875761 TAGGTATCAATTTAAGAAAAAAGTATCAAGTT
1 TAGGTACCAAATTAAGAAAAAAGTATCAAGTT
50875793 CAAGTACTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 13 0.48
32 14 0.52
ACGTcount: A:0.44, C:0.08, G:0.19, T:0.29
Consensus pattern (32 bp):
TAGGTACCAAATTAAGAAAAAAGTATCAAGTT
Found at i:50880190 original size:20 final size:21
Alignment explanation
Indices: 50880143--50880190 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
50880133 CACGGTTTGC
50880143 CCACACGAGCATGTGGAGTAG
1 CCACACGAGCATGTGGAGTAG
*
50880164 TCACACGAGCAT-TCGGA-TAG
1 CCACACGAGCATGT-GGAGTAG
50880184 CCACACG
1 CCACACG
50880191 GCCATGTCTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.29, C:0.29, G:0.27, T:0.15
Consensus pattern (21 bp):
CCACACGAGCATGTGGAGTAG
Found at i:50882710 original size:23 final size:21
Alignment explanation
Indices: 50882671--50882717 Score: 51
Period size: 23 Copynumber: 2.1 Consensus size: 21
50882661 GTTAGATGAA
*
50882671 TTAGGATTTTTGAAATGGCATGT
1 TTAGGATGTTTGAAAT-G-ATGT
50882694 TTAGGTATGTTTG-AATGATGT
1 TTAGG-ATGTTTGAAATGATGT
50882715 TTA
1 TTA
50882718 AACCCTTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 8 0.36
24 6 0.27
ACGTcount: A:0.26, C:0.02, G:0.26, T:0.47
Consensus pattern (21 bp):
TTAGGATGTTTGAAATGATGT
Found at i:50887757 original size:31 final size:30
Alignment explanation
Indices: 50887719--50887819 Score: 116
Period size: 31 Copynumber: 3.3 Consensus size: 30
50887709 TAATCACATT
50887719 AATATTAAATTAATAAAATATTATCTAGATA
1 AATATTAAATTAATAAAATATTATCTA-ATA
** *
50887750 AATATTAAATTTAATTTAATATCT-TATAAT-
1 AATATTAAA-TTAATAAAATAT-TATCTAATA
*
50887780 AATATTAAATTAATAAAATACTATCTATATA
1 AATATTAAATTAATAAAATATTATCTA-ATA
50887811 AATATTAAA
1 AATATTAAA
50887820 GTAAATTTAA
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
28 1 0.02
29 12 0.21
30 11 0.19
31 20 0.34
32 13 0.22
33 1 0.02
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (30 bp):
AATATTAAATTAATAAAATATTATCTAATA
Found at i:50887783 original size:61 final size:61
Alignment explanation
Indices: 50887718--50887845 Score: 211
Period size: 61 Copynumber: 2.1 Consensus size: 61
50887708 TTAATCACAT
* * * *
50887718 TAATATTAAATTAATAAAATATTATCTAGATAAATATTAAATTTAATTTAATATCTTATAA
1 TAATATTAAATTAATAAAATACTATCTAGATAAATATTAAAGTAAATTTAATATCTCATAA
*
50887779 TAATATTAAATTAATAAAATACTATCTATATAAATATTAAAGTAAATTTAATATCTCATAA
1 TAATATTAAATTAATAAAATACTATCTAGATAAATATTAAAGTAAATTTAATATCTCATAA
50887840 TAATAT
1 TAATAT
50887846 ATAGATAAAT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.42
Consensus pattern (61 bp):
TAATATTAAATTAATAAAATACTATCTAGATAAATATTAAAGTAAATTTAATATCTCATAA
Found at i:50902925 original size:10 final size:9
Alignment explanation
Indices: 50902886--50902923 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
50902876 TCTGGAACAC
50902886 AAAT-ATAA
1 AAATCATAA
* *
50902894 AAATTATGA
1 AAATCATAA
50902903 AAATCATAA
1 AAATCATAA
50902912 AAATCATAA
1 AAATCATAA
50902921 AAA
1 AAA
50902924 ATATTAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
8 4 0.15
9 22 0.85
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.24
Consensus pattern (9 bp):
AAATCATAA
Found at i:50912135 original size:27 final size:27
Alignment explanation
Indices: 50912097--50912152 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
50912087 ACTACCATGC
50912097 AATCATAATATATAAACTTTCTCATTA
1 AATCATAATATATAAACTTTCTCATTA
50912124 AATCATAATATATAAACTTTCTCATTA
1 AATCATAATATATAAACTTTCTCATTA
50912151 AA
1 AA
50912153 AGTGTGCTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.39
Consensus pattern (27 bp):
AATCATAATATATAAACTTTCTCATTA
Found at i:50912795 original size:43 final size:43
Alignment explanation
Indices: 50912683--50912795 Score: 156
Period size: 43 Copynumber: 2.6 Consensus size: 43
50912673 GCGACGTTTT
*
50912683 TAGAACATGATCTTTAACGGCGCTTCTCATAAAAACGCCGCTA
1 TAGAACATGATCTTTAACGGCGCTTTTCATAAAAACGCCGCTA
* * *
50912726 AAGAACATGATCTTTAACGGCGCTTTT-ACTGAAAACGCCGCTG
1 TAGAACATGATCTTTAACGGCGCTTTTCA-TAAAAACGCCGCTA
* *
50912769 TAGAACATGATTTTTAGCGGCGCTTTT
1 TAGAACATGATCTTTAACGGCGCTTTT
50912796 TTTTACAAAC
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 1 0.02
43 61 0.98
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (43 bp):
TAGAACATGATCTTTAACGGCGCTTTTCATAAAAACGCCGCTA
Found at i:50913331 original size:66 final size:65
Alignment explanation
Indices: 50913219--50913344 Score: 150
Period size: 66 Copynumber: 1.9 Consensus size: 65
50913209 GCTGTTGTTG
*
50913219 GAGTTCATCATATTTTCTAGTTGCCTCTGCTTCCCTCACTGTTGCCTTC-GCTTTAAGTTGTAGC
1 GAGTTCATCATATTTTCTA-TTGCCTCTGCTTCCCTCACTGCTGCC-TCAGCTTTAAGTTGTAGC
50913283 TA
64 TA
* * *
50913285 GAGTTCATCATATTTTCT-TTGAGCCTTTGCTTCTCTCGA-TGCTGCCTCAGCTTTGAGTTG
1 GAGTTCATCATATTTTCTATT--GCCTCTGCTTCCCTC-ACTGCTGCCTCAGCTTTAAGTTG
50913345 AGCAATGTGC
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
64 2 0.04
65 2 0.04
66 47 0.90
67 1 0.02
ACGTcount: A:0.14, C:0.25, G:0.18, T:0.43
Consensus pattern (65 bp):
GAGTTCATCATATTTTCTATTGCCTCTGCTTCCCTCACTGCTGCCTCAGCTTTAAGTTGTAGCTA
Found at i:50918376 original size:18 final size:17
Alignment explanation
Indices: 50918350--50918393 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
50918340 TTCCTCTTCA
*
50918350 TTTTCTCTTA-TTTATT
1 TTTTTTCTTATTTTATT
50918366 TGTTTTATCTTATTTTATT
1 T-TTTT-TCTTATTTTATT
50918385 TTTTTTCTT
1 TTTTTTCTT
50918394 TTGCACATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
16 1 0.04
17 7 0.29
18 9 0.38
19 7 0.29
ACGTcount: A:0.11, C:0.09, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTTTTCTTATTTTATT
Found at i:50918997 original size:16 final size:15
Alignment explanation
Indices: 50918975--50919017 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 15
50918965 ATTTAACCGA
50918975 ATTTTTATTTTTTTT
1 ATTTTTATTTTTTTT
50918990 ATTGTTTATTTTTTTT
1 ATT-TTTATTTTTTTT
50919006 ATTTTATATTTT
1 ATTTT-TATTTT
50919018 GTGTCCTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.19
16 21 0.81
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.81
Consensus pattern (15 bp):
ATTTTTATTTTTTTT
Found at i:50923082 original size:18 final size:18
Alignment explanation
Indices: 50923061--50923109 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
50923051 AATTCACTTG
50923061 AGAAAAAA-ATAAACAAAA
1 AGAAAAAAGA-AAACAAAA
*
50923079 AGAAAAAAGAAAAGAAAA
1 AGAAAAAAGAAAACAAAA
50923097 ACG-AAAAAGAAAA
1 A-GAAAAAAGAAAA
50923110 GAGAAAAATG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 26 0.93
19 2 0.07
ACGTcount: A:0.82, C:0.04, G:0.12, T:0.02
Consensus pattern (18 bp):
AGAAAAAAGAAAACAAAA
Found at i:50923091 original size:12 final size:12
Alignment explanation
Indices: 50923076--50923116 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
50923066 AAAATAAACA
50923076 AAAAGAAAAAAG
1 AAAAGAAAAAAG
*
50923088 AAAAGAAAAACG
1 AAAAGAAAAAAG
*
50923100 AAAAAGAAAAGAG
1 -AAAAGAAAAAAG
50923113 AAAA
1 AAAA
50923117 ATGAGAGGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.80, C:0.02, G:0.17, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAAAG
Found at i:50923091 original size:13 final size:13
Alignment explanation
Indices: 50923061--50923117 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
50923051 AATTCACTTG
*
50923061 AGAAAAA-AATAA
1 AGAAAAAGAAAAA
*
50923073 ACAAAAAGAAAAA
1 AGAAAAAGAAAAA
50923086 AG-AAAAGAAAAA
1 AGAAAAAGAAAAA
* *
50923098 CGAAAAAGAAAAG
1 AGAAAAAGAAAAA
50923111 AGAAAAA
1 AGAAAAA
50923118 TGAGAGGCCA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
12 17 0.46
13 20 0.54
ACGTcount: A:0.81, C:0.04, G:0.14, T:0.02
Consensus pattern (13 bp):
AGAAAAAGAAAAA
Found at i:50923103 original size:25 final size:25
Alignment explanation
Indices: 50923061--50923117 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
50923051 AATTCACTTG
50923061 AGAAAAAAATAAACAAAAAGAAAAA
1 AGAAAAAAATAAACAAAAAGAAAAA
* *
50923086 AGAAAAGAA-AAACGAAAAAGAAAAG
1 AGAAAAAAATAAAC-AAAAAGAAAAA
50923111 AGAAAAA
1 AGAAAAA
50923118 TGAGAGGCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 4 0.14
25 24 0.86
ACGTcount: A:0.81, C:0.04, G:0.14, T:0.02
Consensus pattern (25 bp):
AGAAAAAAATAAACAAAAAGAAAAA
Found at i:50923456 original size:45 final size:47
Alignment explanation
Indices: 50923389--50923476 Score: 108
Period size: 45 Copynumber: 1.9 Consensus size: 47
50923379 TCCATTTTAT
* *
50923389 TCATTCTTGTATTTTTGACAAAATACGCCATCTTGATTAATTTATTC
1 TCATTCTTGTATTCTAGACAAAATACGCCATCTTGATTAATTTATTC
*** *
50923436 TCATT-TTGTATTCTAG-CAAAATTTTCTATCTTGATTAATTT
1 TCATTCTTGTATTCTAGACAAAATACGCCATCTTGATTAATTT
50923477 GTTCATTTAG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
45 21 0.60
46 9 0.26
47 5 0.14
ACGTcount: A:0.27, C:0.15, G:0.08, T:0.50
Consensus pattern (47 bp):
TCATTCTTGTATTCTAGACAAAATACGCCATCTTGATTAATTTATTC
Found at i:50923639 original size:108 final size:108
Alignment explanation
Indices: 50923450--50923645 Score: 277
Period size: 108 Copynumber: 1.8 Consensus size: 108
50923440 TTTGTATTCT
* **
50923450 AGCAAAATTTTCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAATTTCCATCTT
1 AGCAAAATTTTCTATCCTGATTAATTTGTTCATTTAGAGCTTTAATCTCAACAAATTTCCATCTT
50923515 ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
66 ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
* * ** *
50923558 AGCAAAATTTTCTGTCCTGATTGATTTGTTTGTTTAGAGCTTTAATCTCAACAAAATTT-CATTT
1 AGCAAAATTTTCTATCCTGATTAATTTGTTCATTTAGAGCTTTAATCTCAAC-AAATTTCCATCT
* * *
50923622 TGTCTATTTTGATAATCTTTTTCA
65 TATCCATTGTGATAATCTTTTTCA
50923646 AGCCTTTTTC
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
108 70 0.92
109 6 0.08
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.47
Consensus pattern (108 bp):
AGCAAAATTTTCTATCCTGATTAATTTGTTCATTTAGAGCTTTAATCTCAACAAATTTCCATCTT
ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
Found at i:50924139 original size:44 final size:43
Alignment explanation
Indices: 50924088--50924226 Score: 115
Period size: 44 Copynumber: 3.2 Consensus size: 43
50924078 AGAAACAGAT
50924088 TCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGATAGTAGA
1 TCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGATAG-AGA
* * * * * * *
50924132 TCTTGCCTTCC-TGCA-TTAACAGCGAAGCAGATTGAAA-ACA-AAA
1 TCTTGCC-TCCAT-CAGTT-GCAGTGGAGCTGGTT-AAAGATAGAGA
* *
50924175 TCTTGCATCCATCAGTTGCAGTGGAGCTGGTCAAAGATAGCAGA
1 TCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGATAG-AGA
50924219 TCTTGCCT
1 TCTTGCCT
50924227 TCCTGTATTA
Statistics
Matches: 69, Mismatches: 17, Indels: 18
0.66 0.16 0.17
Matches are distributed among these distances:
41 3 0.04
42 16 0.23
43 11 0.16
44 19 0.28
45 17 0.25
46 3 0.04
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (43 bp):
TCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGATAGAGA
Found at i:50924386 original size:88 final size:88
Alignment explanation
Indices: 50924089--50924868 Score: 876
Period size: 88 Copynumber: 8.9 Consensus size: 88
50924079 GAAACAGATT
* * * *
50924089 CTTGCCTC-CATCAGTTGCAGTGGAGCTGGTTAAAGATAGTAGATCTTGCCTTCCTGCATTAACA
1 CTTGCCTCTC-TCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCTGCATTAACA
* * *
50924153 GCGAAGCAGATTGAAAACA-AAAT
65 GCGAAGCAGATCGAAGACACAAAC
* * * ** *
50924176 CTTGCATC-CATCAGTTGCAGTGGAGCTGGTCAAAGATAGCAGATCTTGCCTTCCTGTATTAACA
1 CTTGCCTCTC-TCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCTGCATTAACA
* *
50924240 GTGAAGCAGATCGAAAACA-AAAC
65 GCGAAGCAGATCGAAGACACAAAC
* ** * * *
50924263 CTTGCCTCTCTCGGGTGTAGCAGAGCTGGTTGAAGACAGCAGATCTTGCATTCCAGCATTAACAG
1 CTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCTGCATTAACAG
*
50924328 CGAAGCAGATTGAAGACACAAAC
66 CGAAGCAGATCGAAGACACAAAC
* * * * * *
50924351 CTTGCCTCTCTTGGTTGTGGTGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTACATTGACAG
1 CTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCTGCATTAACAG
*
50924416 CGAAGCAGGTCGAAGACACAAAC
66 CGAAGCAGATCGAAGACACAAAC
* * ** * *
50924439 CTTGCCTCTCTCAGATGTAGCAGAGCTGGTTGAAGACAGCAGATCTTGCCTCCCTGCATTAACAG
1 CTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCTGCATTAACAG
* *
50924504 TGAAGCAGATTGAAGACACAAAC
66 CGAAGCAGATCGAAGACACAAAC
* * * * *
50924527 ATTGCCTCTCTCGGTTGTGGTGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAG
1 CTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCTGCATTAACAG
** *
50924592 CGAATTAGGTCGAAGACACAAAC
66 CGAAGCAGATCGAAGACACAAAC
* * * *
50924615 CTTGCCTCTTTAGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTTCTTGTATTAACAG
1 CTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCTGCATTAACAG
*
50924680 CGAAGCAGATCGAAAACA-AAAC
66 CGAAGCAGATCGAAGACACAAAC
* * * * * * *
50924702 CTTACCTC-CATCGGTTGCAGTGGAGCTGGTTAAAAATAGCAGATCTTGCATTCTTGCGTTAACA
1 CTTGCCTCTC-TCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCTGCATTAACA
* *
50924766 GTGAAGTAGATCGAA-A-ACAAAC
65 GCGAAGCAGATCGAAGACACAAAC
* * * * * *
50924788 CTTGCCTC-CATCGGTTGTAGTGGTGCTGGTTGAAGATAGCAGATCTTGTCTTCCTGTACTGACG
1 CTTGCCTCTC-TCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCTGCATTAACA
50924852 GCGAAGCAGATCGAAGA
65 GCGAAGCAGATCGAAGA
50924869 AGCCAGTCTT
Statistics
Matches: 588, Mismatches: 100, Indels: 10
0.84 0.14 0.01
Matches are distributed among these distances:
85 1 0.00
86 69 0.12
87 218 0.37
88 300 0.51
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (88 bp):
CTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCTGCATTAACAG
CGAAGCAGATCGAAGACACAAAC
Found at i:50924443 original size:44 final size:43
Alignment explanation
Indices: 50924290--50924621 Score: 154
Period size: 44 Copynumber: 7.5 Consensus size: 43
50924280 TAGCAGAGCT
* * * * *
50924290 GGTTGAAGACAGCAGATCTTGCATTCCAGCATTAACAGCGAAGCA
1 GGTTGAAGACA-CAAACCTTGCCTTCC-TCATTGACAGCGAAGCA
* * ** ** * * *
50924335 GATTGAAGACACAAACCTTGCCTCTCTTGGTTG-TGGTGGAGCT
1 GGTTGAAGACACAAACCTTGCCT-TCCTCATTGACAGCGAAGCA
* *
50924378 GGTTGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGCA
1 GGTTGAAGAC-ACAAACCTTGCCTTCCT-CATTGACAGCGAAGCA
* * * *
50924423 GGTCGAAGACACAAACCTTGCC-TCTCTCAGATG-TAGC-AGAGCT
1 GGTTGAAGACACAAACCTTGCCTTC-CTCA-TTGACAGCGA-AGCA
* * * * *
50924466 GGTTGAAGACAGCAGATCTTGCCTCCCTGCATTAACAGTGAAGCA
1 GGTTGAAGACA-CAAACCTTGCCTTCCT-CATTGACAGCGAAGCA
* * * ** * * *
50924511 GATTGAAGACACAAACATTGCC-TCTCTCGGTTG-TGGTGGAGCT
1 GGTTGAAGACACAAACCTTGCCTTC-CTC-ATTGACAGCGAAGCA
* * **
50924554 GGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAATTA
1 GGTTGAAGAC-ACAAACCTTGCCTTCCT-CATTGACAGCGAAGCA
*
50924599 GGTCGAAGACACAAACCTTGCCT
1 GGTTGAAGACACAAACCTTGCCT
50924622 CTTTAGGTTG
Statistics
Matches: 203, Mismatches: 66, Indels: 37
0.66 0.22 0.12
Matches are distributed among these distances:
42 1 0.00
43 54 0.27
44 88 0.43
45 59 0.29
46 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (43 bp):
GGTTGAAGACACAAACCTTGCCTTCCTCATTGACAGCGAAGCA
Found at i:50925126 original size:95 final size:95
Alignment explanation
Indices: 50924947--50925131 Score: 275
Period size: 95 Copynumber: 1.9 Consensus size: 95
50924937 GACAGCGGGG
* *
50924947 CAGATCAAATATGGTAGATTTTACCTCCCTGTGACTACAGTGGAGTACGGTGAAGCCGATAATTC
1 CAGATCAAATATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACAGTGAAGCCGATAATTC
***
50925012 TATCTCCCTGGTTGGCAGTGGAATATATTA
66 TATCTCCCTGGTCAACAGTGGAATATATTA
* *
50925042 CAGATCAAATATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCC-AGTAGTT
1 CAGATCAAATATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACAGTGAAGCCGA-TAATT
50925106 CTATCTCCCTGAG-CAACAGTGGAATA
65 CTATCTCCCTG-GTCAACAGTGGAATA
50925132 GATTGAAGAT
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
94 1 0.01
95 79 0.98
96 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (95 bp):
CAGATCAAATATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACAGTGAAGCCGATAATTC
TATCTCCCTGGTCAACAGTGGAATATATTA
Found at i:50925972 original size:44 final size:44
Alignment explanation
Indices: 50925144--50926083 Score: 987
Period size: 44 Copynumber: 22.3 Consensus size: 44
50925134 TTGAAGATTA
* * *
50925144 CAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATC---A-CATC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAAC
*
50925185 AAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
* *
50925228 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAAC
*
50925269 AAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
* *
50925312 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAAC
* *
50925353 AAG-TCTTATCTCCCTAAGCAGTAGTAGAGCAGACGAAAGAAAC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
* * * *
50925396 CAGATCTTATCTCCCTAAGCAATAATGGAGCAGATC---A-CATC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAAC
* * * * *
50925437 AAG-TCTTATCACCCTAAGCAGTAGTAGAGTAGATGAAAGAAAC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
* *
50925480 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAAC
* *
50925521 AAG-TCTTATCTCCCTAAGCAGTAGTGGAGTAGACGAAAGAAAC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
50925564 CAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
*
50925607 C-GGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
*
50925650 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CAAC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAAC
* * *
50925691 CAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATC---A-CATC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAAC
*
50925732 AAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
*
50925775 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CAAC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAAC
* * *
50925816 CAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATC---A-CATC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAAC
*
50925857 AAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
* *
50925900 CAG-TCTTATCTCCATAAGCAGTAATGGAGCAGACGAAAGAAAC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
* * *
50925943 CAGATCTTATCTCCCTAAGTAGTTGTGGAGCATACGAAAGAAAC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
* * *
50925987 CAGATCTTTTCTCCCTAAGCAGTAGTGGAGCAGATC----GCATC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAAC
* * *
50926028 AAG-TCTTATCTCCCTAAGCAATAGTAGAGCAGAC-AAAGGAAAC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAA-GAAAC
*
50926071 CA-ATCCTATCTCC
1 CAGATCTTATCTCC
50926084 TTAAAGTTGC
Statistics
Matches: 768, Mismatches: 83, Indels: 94
0.81 0.09 0.10
Matches are distributed among these distances:
39 7 0.01
40 227 0.30
41 111 0.14
42 14 0.02
43 163 0.21
44 240 0.31
45 6 0.01
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (44 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAAC
Found at i:50926101 original size:84 final size:84
Alignment explanation
Indices: 50925144--50926083 Score: 1282
Period size: 84 Copynumber: 11.2 Consensus size: 84
50925134 TTGAAGATTA
*
50925144 CAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
50925209 TGGAGCAGACGAAAGAAAC
66 TGGAGCAGACGAAAGAAAC
50925228 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
50925293 TGGAGCAGACGAAAGAAAC
66 TGGAGCAGACGAAAGAAAC
50925312 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
*
50925377 TAGAGCAGACGAAAGAAAC
66 TGGAGCAGACGAAAGAAAC
* * *
50925396 CAGATCTTATCTCCCTAAGCAATAATGGAGCAGATCACATCAAGTCTTATCACCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
* * *
50925461 TAGAGTAGATGAAAGAAAC
66 TGGAGCAGACGAAAGAAAC
50925480 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
*
50925545 TGGAGTAGACGAAAGAAAC
66 TGGAGCAGACGAAAGAAAC
* **
50925564 CAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAACCGGTCTTATCTCCCTAAGCA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-ACATCAA---GTCTTATCTCCCTAAGCA
50925627 GTAGTGGAGCAGACGAAAGAAAC
62 GTAGTGGAGCAGACGAAAGAAAC
* * *
50925650 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACAACCAGATCTTATCTCCCTAAGTAGTA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAG-TCTTATCTCCCTAAGCAGTA
* *
50925715 GTGGAGCAGATC---A-CATC
65 GTGGAGCAGA-CGAAAGAAAC
* * * *
50925732 AAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAACCAGATCTTATCTCCCTAAGC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATCAAG-TCTTATCTCCCTAAGC
*
50925795 AGTAGTGGAGCAGATC---A-CAAC
61 AGTAGTGGAGCAGA-CGAAAGAAAC
*
50925816 CAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
50925881 TGGAGCAGACGAAAGAAAC
66 TGGAGCAGACGAAAGAAAC
* * * * * *
50925900 CAG-TCTTATCTCCATAAGCAGTAATGGAGCAGA-CGAAAGAAACCAGATCTTATCTCCCTAAGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATCAAG-TCTTATCTCCCTAAGC
* *
50925963 AGTTGTGGAGCATACGAAAGAAAC
61 AGTAGTGGAGCAGACGAAAGAAAC
* * *
50925987 CAGATCTTTTCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAATAG
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
*
50926052 TAGAGCAGAC-AAAGGAAAC
66 TGGAGCAGACGAAA-GAAAC
*
50926071 CA-ATCCTATCTCC
1 CAGATCTTATCTCC
50926084 TTAAAGTTGC
Statistics
Matches: 774, Mismatches: 56, Indels: 53
0.88 0.06 0.06
Matches are distributed among these distances:
80 2 0.00
81 60 0.08
82 10 0.01
83 77 0.10
84 411 0.53
85 63 0.08
86 49 0.06
87 73 0.09
88 28 0.04
89 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (84 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
TGGAGCAGACGAAAGAAAC
Found at i:50926807 original size:18 final size:17
Alignment explanation
Indices: 50926769--50926811 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
50926759 TCCTCTTCAT
*
50926769 TTTTTCTTATTTATTTG
1 TTTTTCTTATTTATTTC
50926786 TTTTATCTTATTT-TATTC
1 TTTT-TCTTATTTAT-TTC
50926804 TTTTTCTT
1 TTTTTCTT
50926812 TTGCACATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.12, C:0.09, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTTTCTTATTTATTTC
Found at i:50927611 original size:7 final size:7
Alignment explanation
Indices: 50927599--50927665 Score: 82
Period size: 7 Copynumber: 9.4 Consensus size: 7
50927589 TTTAACCAAA
50927599 TTTTTAT
1 TTTTTAT
50927606 TTTTTAT
1 TTTTTAT
*
50927613 TTTTATTT
1 TTTT-TAT
50927621 TTATTTAT
1 TT-TTTAT
*
50927629 TGTTTAT
1 TTTTTAT
50927636 TTTTTAT
1 TTTTTAT
50927643 TTTTTA-
1 TTTTTAT
50927649 TTTTTAT
1 TTTTTAT
*
50927656 TTTATAT
1 TTTTTAT
50927663 TTT
1 TTT
50927666 GTGTCCTTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
6 6 0.12
7 37 0.71
8 7 0.13
9 2 0.04
ACGTcount: A:0.16, C:0.00, G:0.01, T:0.82
Consensus pattern (7 bp):
TTTTTAT
Found at i:50929098 original size:35 final size:35
Alignment explanation
Indices: 50929052--50929119 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
50929042 CTTTTATATT
50929052 CTTTAAATGTTTATGTAAGTTATAATAATCATAAA
1 CTTTAAATGTTTATGTAAGTTATAATAATCATAAA
* *
50929087 CTTTAAATGTTTATGTAAGTTATGATTATCATA
1 CTTTAAATGTTTATGTAAGTTATAATAATCATA
50929120 TTTAAATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.38, C:0.06, G:0.10, T:0.46
Consensus pattern (35 bp):
CTTTAAATGTTTATGTAAGTTATAATAATCATAAA
Found at i:50929434 original size:16 final size:15
Alignment explanation
Indices: 50929398--50929433 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
50929388 TTATGCCTTC
50929398 ATTTTTCTTGATTTT
1 ATTTTTCTTGATTTT
50929413 ATTTTTCTTGATTTT
1 ATTTTTCTTGATTTT
50929428 ATTTTT
1 ATTTTT
50929434 TTTTAAGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.14, C:0.06, G:0.06, T:0.75
Consensus pattern (15 bp):
ATTTTTCTTGATTTT
Found at i:50930023 original size:25 final size:23
Alignment explanation
Indices: 50929974--50930024 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 23
50929964 ATCTTAATAT
* *
50929974 TTATTTTTTTGTCAATTTAATCC
1 TTATTTTTTTGTAAATTTAACCC
*
50929997 TTATTTTTTTAGCTAAATTTGACCC
1 TTATTTTTTT-G-TAAATTTAACCC
50930022 TTA
1 TTA
50930025 ATCTTTCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 10 0.43
24 1 0.04
25 12 0.52
ACGTcount: A:0.24, C:0.14, G:0.06, T:0.57
Consensus pattern (23 bp):
TTATTTTTTTGTAAATTTAACCC
Found at i:50930216 original size:19 final size:19
Alignment explanation
Indices: 50930181--50930217 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
50930171 TAAAATTATA
*
50930181 AAAATTAAAAATCAAAATC
1 AAAATTAAAAATAAAAATC
*
50930200 AAAATTAAAATTAAAAAT
1 AAAATTAAAAATAAAAAT
50930218 ATAAAAAGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAATTAAAAATAAAAATC
Found at i:50932727 original size:40 final size:40
Alignment explanation
Indices: 50932666--50932785 Score: 125
Period size: 40 Copynumber: 3.0 Consensus size: 40
50932656 ATTCGCAGCA
* * *
50932666 TTTATGGGCAAAACGCTGCTATTGCTTTACCTTTAGCTGCG
1 TTTATGAG-AAAACGCCGCTATTGCTTTACCTTTAGCGGCG
* *
50932707 TTTATGAGAAAACGCCGCTATTGCTTTACCTTTTGCGGTG
1 TTTATGAGAAAACGCCGCTATTGCTTTACCTTTAGCGGCG
** * * *
50932747 TTTATGCA-AAAACATCGCTATTGTTTTATCTTTTGCGGC
1 TTTATG-AGAAAACGCCGCTATTGCTTTACCTTTAGCGGC
50932786 ATTTTTCTCA
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
40 60 0.88
41 8 0.12
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (40 bp):
TTTATGAGAAAACGCCGCTATTGCTTTACCTTTAGCGGCG
Found at i:50936952 original size:21 final size:21
Alignment explanation
Indices: 50936915--50936957 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
50936905 TTGTATCTTT
*
50936915 TATTTTCTGCATGGTTTTACG
1 TATTTTCTGCATGGTTTCACG
*
50936936 TATTTTCTTTCAT-GTTTCACG
1 TATTTTC-TGCATGGTTTCACG
50936957 T
1 T
50936958 GTATCTTTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.56
Consensus pattern (21 bp):
TATTTTCTGCATGGTTTCACG
Found at i:50938334 original size:41 final size:39
Alignment explanation
Indices: 50938270--50938398 Score: 123
Period size: 41 Copynumber: 3.2 Consensus size: 39
50938260 AGCGGCGCTT
* * *
50938270 TTAGCGGCGATTGGACAACAAACGCCGCTAAAAATTAAGCA
1 TTAGCGGCGATT-TAAAAAAAACGCCGCTAAAAA-TAAGCA
* * *
50938311 TTAGCGGCGATTTAAAAAAAAACGCCGCTAAATATCAGTA
1 TTAGCGGCGATTT-AAAAAAAACGCCGCTAAAAATAAGCA
* * * * * *
50938351 TTACCGGCGCTTTTACAAAAACGCCGCTAATAATGAGCA
1 TTAGCGGCGATTTAAAAAAAACGCCGCTAAAAATAAGCA
50938390 TTAGCGGCG
1 TTAGCGGCG
50938399 TTTCTTAAAA
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
39 28 0.39
40 15 0.21
41 29 0.40
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (39 bp):
TTAGCGGCGATTTAAAAAAAACGCCGCTAAAAATAAGCA
Found at i:50938398 original size:39 final size:38
Alignment explanation
Indices: 50938270--50938398 Score: 123
Period size: 39 Copynumber: 3.2 Consensus size: 38
50938260 AGCGGCGCTT
**
50938270 TTAGCGGCGATTGGACAACAAACGCCGCTAAAAATTAAGCA
1 TTAGCGGCGATTTAACAA-AAACGCCGCT-AAAA-TAAGCA
* * *
50938311 TTAGCGGCGATTTAAAAAAAAACGCCGCTAAATATCAGTA
1 TTAGCGGCGATTT-AACAAAAACGCCGCTAAA-ATAAGCA
* * * *
50938351 TTACCGGCGCTTTTACAAAAACGCCGCTAATAATGAGCA
1 TTAGCGGCGATTTAACAAAAACGCCGCTAA-AATAAGCA
50938390 TTAGCGGCG
1 TTAGCGGCG
50938399 TTTCTTAAAA
Statistics
Matches: 73, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
39 28 0.38
40 19 0.26
41 23 0.32
42 3 0.04
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (38 bp):
TTAGCGGCGATTTAACAAAAACGCCGCTAAAATAAGCA
Found at i:50941246 original size:21 final size:21
Alignment explanation
Indices: 50941220--50941290 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
50941210 CTACAACTTA
* *
50941220 AAGCAGAGGCGGAAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* *
50941241 AAGCAGCGACTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* * *
50941262 AAGCGGAGGCTGCAGCAAGAG
1 AAGCAGAGGCTGCAGCGAGGG
50941283 AAGCAGAG
1 AAGCAGAG
50941291 CAGAGCAAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.34, C:0.18, G:0.45, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:50941533 original size:14 final size:14
Alignment explanation
Indices: 50941514--50941547 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
50941504 ATTGCTATTG
50941514 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
50941528 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
*
50941542 TTTGCT
1 GTTGCT
50941548 ACAGGAGGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.09, G:0.21, T:0.53
Consensus pattern (14 bp):
GTTGCTTTTGAAAT
Found at i:50941721 original size:42 final size:42
Alignment explanation
Indices: 50941664--50941987 Score: 517
Period size: 42 Copynumber: 7.7 Consensus size: 42
50941654 AAAAATGCCA
* **
50941664 CTAAAGAACATGTTCTTTAGCGGCG-TTTTCCCTTAAGCGCCG
1 CTAAAGAACATGATCTTTAGCGGCGTTTTTTTC-TAAGCGCCG
*
50941706 CTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGCCG
1 CTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAGCGCCG
* * * *
50941748 CTAAAGAACATGGTCTTTAGTGGCATTTTTTTAC-AAACGCCG
1 CTAAAGAACATGATCTTTAGCGGCGTTTTTTT-CTAAGCGCCG
*
50941790 CTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGCCG
1 CTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAGCGCCG
50941832 CTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAGCGCCG
1 CTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAGCGCCG
50941874 CTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAGCGCCG
1 CTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAGCGCCG
50941916 CTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAGCGCCG
1 CTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAGCGCCG
* *
50941958 CTAAAGAACATGGTCTTTAACGGCGTTTTT
1 CTAAAGAACATGATCTTTAGCGGCGTTTTT
50941988 GTTTGTAAAC
Statistics
Matches: 266, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
41 1 0.00
42 259 0.97
43 6 0.02
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (42 bp):
CTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAGCGCCG
Found at i:50941791 original size:84 final size:84
Alignment explanation
Indices: 50941616--50941987 Score: 529
Period size: 84 Copynumber: 4.5 Consensus size: 84
50941606 TTTTGTATAA
* * ** ** * *
50941616 AAGCGCCACTAAAGAACATGTTCTTTTA-CGGCG--TTTGTAAAAATGCCACTAAAGAACATGTT
1 AAGCGCCGCTAAAGAACATGTTC-TTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGAT
**
50941678 CTTTAGCGGCG-TTTTCCCTT
65 CTTTAGCGGCGTTTTTTTC-T
*
50941698 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGGTC
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATC
* *
50941763 TTTAGTGGCATTTTTTTAC-
66 TTTAGCGGCGTTTTTTT-CT
*
50941782 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATC
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATC
50941847 TTTAGCGGCGTTTTTTTCT
66 TTTAGCGGCGTTTTTTTCT
*
50941866 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATC
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATC
50941931 TTTAGCGGCGTTTTTTTCT
66 TTTAGCGGCGTTTTTTTCT
* *
50941950 AAGCGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTT
50941988 GTTTGTAAAC
Statistics
Matches: 264, Mismatches: 20, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
81 4 0.02
82 27 0.10
83 1 0.00
84 227 0.86
85 4 0.02
86 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (84 bp):
AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGATC
TTTAGCGGCGTTTTTTTCT
Found at i:50951384 original size:7 final size:7
Alignment explanation
Indices: 50951372--50951409 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
50951362 TTTTCTGATC
50951372 AGTGACA
1 AGTGACA
50951379 AGTGACA
1 AGTGACA
*
50951386 AGTGATA
1 AGTGACA
50951393 AGTGACA
1 AGTGACA
*
50951400 AGTGATA
1 AGTGACA
50951407 AGT
1 AGT
50951410 AGTAGCTTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.42, C:0.08, G:0.29, T:0.21
Consensus pattern (7 bp):
AGTGACA
Found at i:50951391 original size:21 final size:21
Alignment explanation
Indices: 50951367--50951409 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
50951357 TACAATTTTC
*
50951367 TGATCAGTGACAAGTGACAAG
1 TGATAAGTGACAAGTGACAAG
*
50951388 TGATAAGTGACAAGTGATAAG
1 TGATAAGTGACAAGTGACAAG
50951409 T
1 T
50951410 AGTAGCTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.09, G:0.28, T:0.23
Consensus pattern (21 bp):
TGATAAGTGACAAGTGACAAG
Found at i:50951395 original size:14 final size:14
Alignment explanation
Indices: 50951372--50951409 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
50951362 TTTTCTGATC
*
50951372 AGTGACAAGTGACA
1 AGTGATAAGTGACA
50951386 AGTGATAAGTGACA
1 AGTGATAAGTGACA
50951400 AGTGATAAGT
1 AGTGATAAGT
50951410 AGTAGCTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.42, C:0.08, G:0.29, T:0.21
Consensus pattern (14 bp):
AGTGATAAGTGACA
Found at i:50951442 original size:65 final size:65
Alignment explanation
Indices: 50951335--50951460 Score: 198
Period size: 65 Copynumber: 1.9 Consensus size: 65
50951325 ACTTCTGATT
*
50951335 AGTGATAAGTAGTAGCTCCAACTACAATTTTCTGATCAGTGACAAGTGACAAGTGATAAGTGACA
1 AGTGATAAGTAGTAGCTCCAACTACAATTATCTGATCAGTGACAAGTGACAAGTGATAAGTGACA
* * * **
50951400 AGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATTGGTGACAAGTGACAAGTGATAAGT
1 AGTGATAAGTAGTAGCTCCAACTACAATTATCTGATCAGTGACAAGTGACAAGTGATAAGT
50951461 AGTAGCTTCA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
65 55 1.00
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (65 bp):
AGTGATAAGTAGTAGCTCCAACTACAATTATCTGATCAGTGACAAGTGACAAGTGATAAGTGACA
Found at i:50951468 original size:51 final size:51
Alignment explanation
Indices: 50951386--50951608 Score: 313
Period size: 51 Copynumber: 4.4 Consensus size: 51
50951376 ACAAGTGACA
* *
50951386 AGTGATAAGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATT
1 AGTGACAAGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATC
*
50951437 GGTGACAAGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATC
1 AGTGACAAGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATC
* * * * *
50951488 AATGATAAGTGACAAGTGATAAGTAGTAGCTTCAGCTATACTTATCTCATT
1 AGTGACAAGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATC
* * * *
50951539 AGTGACAAGTGGCAAGTGATAAGTGGTAACTT-AGCTACACTTATCTAATC
1 AGTGACAAGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATC
* *
50951589 AATGACAAGTGATAAGTGAT
1 AGTGACAAGTGACAAGTGAT
50951609 CATACGTAAG
Statistics
Matches: 152, Mismatches: 20, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
50 32 0.21
51 120 0.79
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.30
Consensus pattern (51 bp):
AGTGACAAGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATC
Found at i:50951506 original size:102 final size:101
Alignment explanation
Indices: 50951388--50951608 Score: 352
Period size: 102 Copynumber: 2.2 Consensus size: 101
50951378 AAGTGACAAG
* *
50951388 TGATAAGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATTGGTGACAAGTGACAAG
1 TGATAAGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTCATTAGTGACAAGTGACAAG
* *
50951453 TGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAA
66 TGATAAGTAGTAACTT-AGCTACACTTATCTAATCAA
* *
50951490 TGATAAGTGACAAGTGATAAGTAGTAGCTTCAGCTATACTTATCTCATTAGTGACAAGTGGCAAG
1 TGATAAGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTCATTAGTGACAAGTGACAAG
*
50951555 TGATAAGTGGTAACTTAGCTACACTTATCTAATCAA
66 TGATAAGTAGTAACTTAGCTACACTTATCTAATCAA
* *
50951591 TGACAAGTGATAAGTGAT
1 TGATAAGTGACAAGTGAT
50951609 CATACGTAAG
Statistics
Matches: 110, Mismatches: 9, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
101 35 0.32
102 75 0.68
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.30
Consensus pattern (101 bp):
TGATAAGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTCATTAGTGACAAGTGACAAG
TGATAAGTAGTAACTTAGCTACACTTATCTAATCAA
Found at i:50958061 original size:14 final size:14
Alignment explanation
Indices: 50958038--50958076 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
50958028 TTATCTGATC
*
50958038 AGTGACAAGTAACA
1 AGTGATAAGTAACA
*
50958052 AGTGATAAGTGACA
1 AGTGATAAGTAACA
50958066 AGTGATAAGTA
1 AGTGATAAGTA
50958077 GTAGCTTCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.46, C:0.08, G:0.26, T:0.21
Consensus pattern (14 bp):
AGTGATAAGTAACA
Found at i:50958098 original size:65 final size:65
Alignment explanation
Indices: 50957989--50958112 Score: 221
Period size: 65 Copynumber: 1.9 Consensus size: 65
50957979 TGAGTACTTC
*
50957989 TGATCAGTGACAAGTGATAAGTAGTAGATTCAGCTACACTTATCTGATCAGTGACAAGTAACAAG
1 TGATAAGTGACAAGTGATAAGTAGTAGATTCAGCTACACTTATCTGATCAGTGACAAGTAACAAG
* *
50958054 TGATAAGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATGAGTGACAAGT
1 TGATAAGTGACAAGTGATAAGTAGTAGATTCAGCTACACTTATCTGATCAGTGACAAGT
50958113 GATAAGTAGT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 56 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (65 bp):
TGATAAGTGACAAGTGATAAGTAGTAGATTCAGCTACACTTATCTGATCAGTGACAAGTAACAAG
Found at i:50958122 original size:44 final size:43
Alignment explanation
Indices: 50958054--50958213 Score: 194
Period size: 44 Copynumber: 3.5 Consensus size: 43
50958044 AAGTAACAAG
*
50958054 TGATAAGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATC
1 TGATCAGTGACAAGTGATAAGTAGTAGCTT-AGCTACACTTATC
*
50958098 TGATGAGTGACAAGTGATAAGTAGTAGCTTTAGCTACACTTATC
1 TGATCAGTGACAAGTGATAAGTAGTAGC-TTAGCTACACTTATC
*
50958142 TGATCAGTGACAAGTGGCAAGTAATAAGTGGTAGCTTAGCTACACTTATC
1 TGATCAGTGACAAGT-----G--ATAAGTAGTAGCTTAGCTACACTTATC
* *
50958192 TGATCAGGGACAAGGGATAAGT
1 TGATCAGTGACAAGTGATAAGT
50958214 GATCATACGT
Statistics
Matches: 103, Mismatches: 5, Indels: 17
0.82 0.04 0.14
Matches are distributed among these distances:
43 6 0.06
44 54 0.52
45 3 0.03
49 1 0.01
50 28 0.27
51 11 0.11
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.28
Consensus pattern (43 bp):
TGATCAGTGACAAGTGATAAGTAGTAGCTTAGCTACACTTATC
Found at i:50958194 original size:50 final size:51
Alignment explanation
Indices: 50958103--50958205 Score: 163
Period size: 50 Copynumber: 2.0 Consensus size: 51
50958093 TTATCTGATG
* *
50958103 AGTGACAAGTGATAAGTAGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTAATAAGTAGTAGCTTTAGCTACACTTATCTGATCAGGGACA
* *
50958154 AGTGGCAAGTAATAAGTGGTAGC-TTAGCTACACTTATCTGATCAGGGACA
1 AGTGACAAGTAATAAGTAGTAGCTTTAGCTACACTTATCTGATCAGGGACA
50958204 AG
1 AG
50958206 GGATAAGTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
50 28 0.58
51 20 0.42
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (51 bp):
AGTGACAAGTAATAAGTAGTAGCTTTAGCTACACTTATCTGATCAGGGACA
Found at i:50960302 original size:36 final size:36
Alignment explanation
Indices: 50960251--50960329 Score: 131
Period size: 36 Copynumber: 2.2 Consensus size: 36
50960241 TAATGTTGTT
50960251 TAAGTAGCTACACTTATCTGATCAAGTGAAAAAGTGA
1 TAAGT-GCTACACTTATCTGATCAAGTGAAAAAGTGA
* *
50960288 TAAGTGCTATACTTATCTGATCAAGTGACAAAGTGA
1 TAAGTGCTACACTTATCTGATCAAGTGAAAAAGTGA
50960324 TAAGTG
1 TAAGTG
50960330 TTAGCCTTAG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
36 35 0.88
37 5 0.12
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (36 bp):
TAAGTGCTACACTTATCTGATCAAGTGAAAAAGTGA
Found at i:50960349 original size:46 final size:46
Alignment explanation
Indices: 50960293--50960464 Score: 287
Period size: 46 Copynumber: 3.8 Consensus size: 46
50960283 AGTGATAAGT
* *
50960293 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTA
*
50960339 GCTACACTTATCTGATCAAGTGAGAAAGTGATAAGTGGTAGCCTTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTA
50960385 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCC-TA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTA
*
50960430 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTG
50960465 ATCATATGTA
Statistics
Matches: 121, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
43 12 0.10
44 5 0.04
45 19 0.16
46 85 0.70
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTA
Found at i:50969029 original size:114 final size:114
Alignment explanation
Indices: 50968900--50969462 Score: 1036
Period size: 114 Copynumber: 4.9 Consensus size: 114
50968890 ATAGTGGCAG
*
50968900 TAGCGGCGTTTGTTTGTAAGCGCCGCAAACAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
1 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
50968965 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTGAAGTGGATCAT
66 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTGAAGTGGATCAT
50969014 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
1 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
* *
50969079 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTGAAGTGGATAAA
66 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTGAAGTGGATCAT
50969128 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
1 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
*
50969193 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTGAAGTGTATCAT
66 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTGAAGTGGATCAT
*
50969242 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAATGCAGCGTACAAGATTGAGGT
1 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
* * *
50969307 ATAGTTGAATTTGTGGTGTTTCTGTAAAAACGCCGCTGAAGTGGATCAT
66 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTGAAGTGGATCAT
50969356 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGG
1 TAGCGGCGTTTGTTTGTAAGCGCCGC-AAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGG
*
50969421 TATAGTAGAATTGGTGGCGTTTCTATAAAAACGCCGCTGAAG
65 TATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTGAAG
50969463 CACATTATTA
Statistics
Matches: 432, Mismatches: 16, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
114 357 0.83
115 75 0.17
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (114 bp):
TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTGAAGTGGATCAT
Found at i:50969567 original size:342 final size:342
Alignment explanation
Indices: 50968900--50969571 Score: 974
Period size: 342 Copynumber: 2.0 Consensus size: 342
50968890 ATAGTGGCAG
*
50968900 TAGCGGCGTTTGTTTGTAAGCGCCGCAAACAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
1 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
50968965 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTGAAGTGGATCATTAGCGGCGTTTGTTTG
66 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTGAAGTGGATCATTAGCGGCGTTTGTTTG
50969030 TAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGTATAGTAGAATTGGTGG
131 TAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGTATAGTAGAATTGGTGG
* *** * * *****
50969095 CGTTTCTGTAAAAACGCCGCTGAAGTGGATAAATAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAA
196 CGTTTCTATAAAAACGCCGCTGAAGCACATAAATAGCGGCGCTAGGGAAAAAGCGCCGCAAAAAA
* * * * * * *
50969160 TGTTAAACAAAACGCAGCGTACAAGATTGAGGTATAGTAGAATTGGTGGCGTTTCTGTAAAAACG
261 TCTGAAACAAAACGCACCGTACAAGATTGAGGCATAGTAGAATTAGTGGCGCTTCAGTAAAAACG
50969225 CCGCTGAAGTGTATCAT
326 CCGCTGAAGTGTATCAT
*
50969242 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAATGCAGCGTACAAGATTGAGGT
1 TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
* * *
50969307 ATAGTTGAATTTGTGGTGTTTCTGTAAAAACGCCGCTGAAGTGGATCATTAGCGGCGTTTGTTTG
66 ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTGAAGTGGATCATTAGCGGCGTTTGTTTG
50969372 TAAGCGCCGCAAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGTATAGTAGAATTGGTG
131 TAAGCGCCGC-AAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGTATAGTAGAATTGGTG
* * * *
50969437 GCGTTTCTATAAAAACGCCGCTGAAGCACATTATTAGCGGCGCTAGGGAAAAAGCGCTGCAAAAG
195 GCGTTTCTATAAAAACGCCGCTGAAGCACATAAATAGCGGCGCTAGGGAAAAAGCGCCGCAAAAA
* * * *** *
50969502 ATCTGGACCAAAATGCACCGT-TTGGAATTGAGGCATAG-AGCCAA-TAGTGGCGCTTCAG-GAA
260 ATCTGAAACAAAACGCACCGTACAAG-ATTGAGGCATAGTAG--AATTAGTGGCGCTTCAGTAAA
50969563 AACGCCGCT
322 AACGCCGCT
50969572 AGAGCCCGCT
Statistics
Matches: 292, Mismatches: 34, Indels: 8
0.87 0.10 0.02
Matches are distributed among these distances:
342 149 0.51
343 141 0.48
344 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.25
Consensus pattern (342 bp):
TAGCGGCGTTTGTTTGTAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGT
ATAGTAGAATTGGTGGCGTTTCTGTAAAAACGCCGCTGAAGTGGATCATTAGCGGCGTTTGTTTG
TAAGCGCCGCAAAAAATGTTAAACAAAACGCAGCGTACAAGATTGAGGTATAGTAGAATTGGTGG
CGTTTCTATAAAAACGCCGCTGAAGCACATAAATAGCGGCGCTAGGGAAAAAGCGCCGCAAAAAA
TCTGAAACAAAACGCACCGTACAAGATTGAGGCATAGTAGAATTAGTGGCGCTTCAGTAAAAACG
CCGCTGAAGTGTATCAT
Found at i:50971297 original size:17 final size:19
Alignment explanation
Indices: 50971277--50971317 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
50971267 CTGTCATCTC
50971277 CCCCAAATCCCTAA-A-TT
1 CCCCAAATCCCTAACAGTT
*
50971294 CCCCTAATCCCTAACAGTT
1 CCCCAAATCCCTAACAGTT
50971313 CCCCA
1 CCCCA
50971318 TACCCGACGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 13 0.65
18 1 0.05
19 6 0.30
ACGTcount: A:0.29, C:0.46, G:0.02, T:0.22
Consensus pattern (19 bp):
CCCCAAATCCCTAACAGTT
Found at i:50973170 original size:9 final size:9
Alignment explanation
Indices: 50973129--50973362 Score: 213
Period size: 9 Copynumber: 25.8 Consensus size: 9
50973119 TACAAGCTTA
*
50973129 TACATAAAT
1 TACATAACT
* *
50973138 TAAATTACT
1 TACATAACT
50973147 TACATAACT
1 TACATAACT
*
50973156 TGA-ATAAAT
1 T-ACATAACT
* *
50973165 TAAATAAGT
1 TACATAACT
50973174 TACATAACT
1 TACATAACT
*
50973183 TACATAACC
1 TACATAACT
*
50973192 TACATAAAT
1 TACATAACT
*
50973201 TAAATAACT
1 TACATAACT
50973210 TACATAACT
1 TACATAACT
*
50973219 TACATAAAT
1 TACATAACT
*
50973228 TA-AGTAACC
1 TACA-TAACT
*
50973237 TACATAACA
1 TACATAACT
50973246 TACATAAACT
1 TACAT-AACT
* *
50973256 TGCATAAAT
1 TACATAACT
*
50973265 TAAATAACT
1 TACATAACT
*
50973274 TACATAACC
1 TACATAACT
*
50973283 TACATAAAT
1 TACATAACT
*
50973292 TAAATAACT
1 TACATAACT
*
50973301 TCCATAACT
1 TACATAACT
*
50973310 TACATAAAT
1 TACATAACT
50973319 TA-AGTAACT
1 TACA-TAACT
50973328 TACATAACT
1 TACATAACT
50973337 TACATAAACT
1 TACAT-AACT
*
50973347 TGCATAACT
1 TACATAACT
50973356 TACATAA
1 TACATAA
50973363 AAATATATCA
Statistics
Matches: 179, Mismatches: 38, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
8 3 0.02
9 158 0.88
10 18 0.10
ACGTcount: A:0.49, C:0.17, G:0.03, T:0.32
Consensus pattern (9 bp):
TACATAACT
Found at i:50973264 original size:37 final size:37
Alignment explanation
Indices: 50973204--50973363 Score: 123
Period size: 37 Copynumber: 4.4 Consensus size: 37
50973194 CATAAATTAA
* *
50973204 ATAACTTACAT-AACTTACATAAATTAAGTAACCTAC
1 ATAACATACATAAACTTACATAAATTAAATAACCTAC
* *
50973240 ATAACATACATAAACTTGCATAAATTAAATAACTTAC
1 ATAACATACATAAACTTACATAAATTAAATAACCTAC
* * * ** *
50973277 ATAACCTACATAAA-TTAAATAACTTCCATAACTTAC
1 ATAACATACATAAACTTACATAAATTAAATAACCTAC
* * * *
50973313 ATAA-ATTA-AGT-AACTTACATAACTTACATAAACTTGC
1 ATAACA-TACA-TAAACTTACATAAATTAAAT-AACCTAC
*
50973350 ATAACTTACATAAA
1 ATAACATACATAAA
50973364 AATATATCAT
Statistics
Matches: 101, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
35 3 0.03
36 47 0.47
37 48 0.48
38 3 0.03
ACGTcount: A:0.49, C:0.18, G:0.03, T:0.31
Consensus pattern (37 bp):
ATAACATACATAAACTTACATAAATTAAATAACCTAC
Found at i:50973383 original size:91 final size:91
Alignment explanation
Indices: 50973184--50973383 Score: 267
Period size: 91 Copynumber: 2.2 Consensus size: 91
50973174 TACATAACTT
* *
50973184 ACATAACCTACATAAATTAAATAACTTACATAACTTACATAAATTAAGTAACCTACATAACATAC
1 ACATAACATACACAAATTAAATAACTTACATAACTTACATAAATTAAGTAACCTACATAACATAC
**
50973249 ATAAACTTGCATAAATTAAATAACTT
66 ATAAACTTGCATAAATTAAATAACAA
* * * * *
50973275 ACATAACCTACATAAATTAAATAACTTCCATAACTTACATAAATTAAGTAACTTACATAACTTAC
1 ACATAACATACACAAATTAAATAACTTACATAACTTACATAAATTAAGTAACCTACATAACATAC
* *
50973340 ATAAACTTGCATAACTTACATAA-AA
66 ATAAACTTGCATAAATTAAATAACAA
* *
50973365 ATATATCATATCACAAATT
1 ACATAACATA-CACAAATT
50973384 TCCGTAATTC
Statistics
Matches: 97, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
90 7 0.07
91 90 0.93
ACGTcount: A:0.49, C:0.18, G:0.02, T:0.30
Consensus pattern (91 bp):
ACATAACATACACAAATTAAATAACTTACATAACTTACATAAATTAAGTAACCTACATAACATAC
ATAAACTTGCATAAATTAAATAACAA
Found at i:50979684 original size:279 final size:279
Alignment explanation
Indices: 50979184--50979742 Score: 1064
Period size: 279 Copynumber: 2.0 Consensus size: 279
50979174 ACGAAGTTAA
50979184 ATGGCTCTCCCAAGGTCCAAATCGAGTGGTTAAAAGATATAGTGCGTTCCTCATCAACGGATTCA
1 ATGGCTCTCCCAAGGTCCAAATCGAGTGGTTAAAAGATATAGTGCGTTCCTCATCAACGGATTCA
* * *
50979249 GATTTCATACAAAATATCGCGAGAGGTTGAGGAGAACGCAAAATTGTGGAATAGTTGTCAATTCT
66 AATTTCATACAAAATATCGCGAGAGGTTGAGGAGAACACAAAATTATGGAATAGTTGTCAATTCT
*
50979314 GCAATTACAAGTTATGCTAGTGCTAGGGACAATAATCCTGTAGAGGGAAATGTGGAATCTTTCGG
131 GCAATCACAAGTTATGCTAGTGCTAGGGACAATAATCCTGTAGAGGGAAATGTGGAATCTTTCGG
50979379 ACATCTTACTGACATAATAGAGTTGGATTACTACGGCAAATGGAAAGTTGTCTTATTTCGAGGTG
196 ACATCTTACTGACATAATAGAGTTGGATTACTACGGCAAATGGAAAGTTGTCTTATTTCGAGGTG
50979444 ATTGGGCCGATGTTAATAC
261 ATTGGGCCGATGTTAATAC
50979463 ATGGCTCTCCCAAGGTCCAAATCGAGTGGTTAAAAGATATAGTGCGTTCCTCATCAACGGATTCA
1 ATGGCTCTCCCAAGGTCCAAATCGAGTGGTTAAAAGATATAGTGCGTTCCTCATCAACGGATTCA
* *
50979528 AATTTCATACAAAATATCGCGAGAGGTTGATGAGAACATAAAATTATGGAATAGTTGTCAATTCT
66 AATTTCATACAAAATATCGCGAGAGGTTGAGGAGAACACAAAATTATGGAATAGTTGTCAATTCT
50979593 GCAATCACAAGTTATGCTAGTGCTAGGGACAATAATCCTGTAGAGGGAAATGTGGAATCTTTCGG
131 GCAATCACAAGTTATGCTAGTGCTAGGGACAATAATCCTGTAGAGGGAAATGTGGAATCTTTCGG
50979658 ACATCTTACTGACATAATAGAGTTGGATTACTACGGCAAATGGAAAGTTGTCTTATTTCGAGGTG
196 ACATCTTACTGACATAATAGAGTTGGATTACTACGGCAAATGGAAAGTTGTCTTATTTCGAGGTG
50979723 ATTGGGCCGATGTTAATAC
261 ATTGGGCCGATGTTAATAC
50979742 A
1 A
50979743 GCTCGTGGAA
Statistics
Matches: 274, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
279 274 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29
Consensus pattern (279 bp):
ATGGCTCTCCCAAGGTCCAAATCGAGTGGTTAAAAGATATAGTGCGTTCCTCATCAACGGATTCA
AATTTCATACAAAATATCGCGAGAGGTTGAGGAGAACACAAAATTATGGAATAGTTGTCAATTCT
GCAATCACAAGTTATGCTAGTGCTAGGGACAATAATCCTGTAGAGGGAAATGTGGAATCTTTCGG
ACATCTTACTGACATAATAGAGTTGGATTACTACGGCAAATGGAAAGTTGTCTTATTTCGAGGTG
ATTGGGCCGATGTTAATAC
Found at i:50982255 original size:43 final size:43
Alignment explanation
Indices: 50982164--50982329 Score: 280
Period size: 43 Copynumber: 3.9 Consensus size: 43
50982154 TGTATAAAAA
* * * *
50982164 CGCCGCTAAAAAACATGATCTTTAGCAGC-ATTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTTCTAAG
*
50982206 CGCCGCTAAAGAATATGGTCTTTAGCGGCGTTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTTCTAAG
50982249 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTTCTAAG
50982292 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTT
50982330 GTAAACGCTG
Statistics
Matches: 117, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
42 25 0.21
43 92 0.79
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (43 bp):
CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTTCTAAG
Found at i:50982406 original size:22 final size:22
Alignment explanation
Indices: 50982381--50982424 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
50982371 TAGTGCCGTT
* *
50982381 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAACGCCGCTAAAGACCTA
50982403 AAAAAACGCCGCTAAAGACCTA
1 AAAAAACGCCGCTAAAGACCTA
50982425 TTTTGGTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.27, G:0.18, T:0.09
Consensus pattern (22 bp):
AAAAAACGCCGCTAAAGACCTA
Found at i:50982554 original size:12 final size:13
Alignment explanation
Indices: 50982522--50982552 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
50982512 ATACATGTTA
50982522 AATATTTAAATTT
1 AATATTTAAATTT
50982535 AA-ATTTAAATTT
1 AATATTTAAATTT
50982547 AATATT
1 AATATT
50982553 AATTTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AATATTTAAATTT
Found at i:50986065 original size:28 final size:26
Alignment explanation
Indices: 50985990--50986067 Score: 129
Period size: 26 Copynumber: 2.9 Consensus size: 26
50985980 TTTGGGGTCA
50985990 CACGGTTCCCCACACGGTGTGTGTCC
1 CACGGTTCCCCACACGGTGTGTGTCC
50986016 CACGGTTCCCCACACGGTGTGTGTCC
1 CACGGTTCCCCACACGGTGTGTGTCC
*
50986042 CACGGTTGGCCCACACGGTCGTGTGT
1 CACGGTT-CCCCACACGGT-GTGTGT
50986068 TGCTATAAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 33 0.67
27 10 0.20
28 6 0.12
ACGTcount: A:0.12, C:0.36, G:0.29, T:0.23
Consensus pattern (26 bp):
CACGGTTCCCCACACGGTGTGTGTCC
Found at i:50990241 original size:17 final size:17
Alignment explanation
Indices: 50990219--50990252 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
50990209 TTCTAAGTTA
50990219 TGAAGGAGAATTATTCT
1 TGAAGGAGAATTATTCT
50990236 TGAAGGAGAATTATTCT
1 TGAAGGAGAATTATTCT
50990253 AACACATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.35
Consensus pattern (17 bp):
TGAAGGAGAATTATTCT
Found at i:50994720 original size:22 final size:23
Alignment explanation
Indices: 50994693--50994745 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
50994683 TATAAAATTT
50994693 TATAAATA-AAAAATAAAAA-AA
1 TATAAATACAAAAATAAAAATAA
* *
50994714 TATTAAATACTAAATTAAAAATAA
1 TA-TAAATACAAAAATAAAAATAA
50994738 TATAAATA
1 TATAAATA
50994746 TATTTTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 2 0.07
22 6 0.22
23 15 0.56
24 4 0.15
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (23 bp):
TATAAATACAAAAATAAAAATAA
Found at i:50994771 original size:28 final size:29
Alignment explanation
Indices: 50994724--50994778 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
50994714 TATTAAATAC
*
50994724 TAAATTAAAAATAATATAAATATATTTTT
1 TAAATTAAAAATAATATAAATAAATTTTT
50994753 TAAATT-AAAAT-ATAATAAATAAATTT
1 TAAATTAAAAATAAT-ATAAATAAATTT
50994779 AAAGTTTGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 2 0.08
28 16 0.67
29 6 0.25
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (29 bp):
TAAATTAAAAATAATATAAATAAATTTTT
Found at i:51002097 original size:14 final size:15
Alignment explanation
Indices: 51002078--51002106 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
51002068 ATAGTGTTTT
51002078 AAATATTT-TATTAA
1 AAATATTTATATTAA
51002092 AAATATTTATATTAA
1 AAATATTTATATTAA
51002107 TATTTTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
AAATATTTATATTAA
Found at i:51002281 original size:29 final size:29
Alignment explanation
Indices: 51002248--51002307 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
51002238 CCAGCTCCAT
51002248 ATATCACTATATACTCATATAAACTTCAA
1 ATATCACTATATACTCATATAAACTTCAA
51002277 ATATCACTATATACTCATATAAACTTCAA
1 ATATCACTATATACTCATATAAACTTCAA
51002306 AT
1 AT
51002308 TAAATATTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.45, C:0.20, G:0.00, T:0.35
Consensus pattern (29 bp):
ATATCACTATATACTCATATAAACTTCAA
Found at i:51012354 original size:13 final size:14
Alignment explanation
Indices: 51012321--51012364 Score: 56
Period size: 13 Copynumber: 3.3 Consensus size: 14
51012311 ATCTGTGAAC
*
51012321 AATATTATT-TAAA
1 AATATTATTATTAA
*
51012334 AATATTATTTTTAA
1 AATATTATTATTAA
51012348 AAT-TTATTATTAA
1 AATATTATTATTAA
51012361 AATA
1 AATA
51012365 AAATTAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
13 21 0.78
14 6 0.22
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AATATTATTATTAA
Found at i:51012355 original size:16 final size:16
Alignment explanation
Indices: 51012323--51012362 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 16
51012313 CTGTGAACAA
51012323 TATTATTTAAAAATAT
1 TATTATTTAAAAATAT
51012339 TATT-TTT-AAAAT-T
1 TATTATTTAAAAATAT
51012352 TATTA-TTAAAA
1 TATTATTTAAAA
51012363 TAAAATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 7 0.32
14 8 0.36
15 3 0.14
16 4 0.18
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTATTTAAAAATAT
Found at i:51012392 original size:20 final size:20
Alignment explanation
Indices: 51012367--51012428 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
51012357 TTAAAATAAA
51012367 ATTAAAATATTAAATAATTT
1 ATTAAAATATTAAATAATTT
*
51012387 ATTAAAATA--ACA-AATTAT
1 ATTAAAATATTAAATAATT-T
*
51012405 ATTAATTATATT-AATAATTT
1 ATTAA-AATATTAAATAATTT
51012425 ATTA
1 ATTA
51012429 TATGACTGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
17 4 0.12
18 8 0.24
19 3 0.09
20 15 0.44
21 4 0.12
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTAAAATATTAAATAATTT
Found at i:51025051 original size:21 final size:21
Alignment explanation
Indices: 51025009--51025051 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
51024999 CTGATTCTGG
*
51025009 TGTGGGTGCATCTAGCTTTGT
1 TGTGGGTGCATCTAGCTGTGT
*
51025030 TGTGGTTGCATCTAAG-TGTGT
1 TGTGGGTGCATCT-AGCTGTGT
51025051 T
1 T
51025052 AATTGTAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.12, C:0.12, G:0.33, T:0.44
Consensus pattern (21 bp):
TGTGGGTGCATCTAGCTGTGT
Found at i:51026375 original size:16 final size:17
Alignment explanation
Indices: 51026356--51026389 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
51026346 AAATATTATG
51026356 AAATAAAAAT-AAACAA
1 AAATAAAAATCAAACAA
*
51026372 AAATAAACATCAAACAA
1 AAATAAAAATCAAACAA
51026389 A
1 A
51026390 CGCCATTCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (17 bp):
AAATAAAAATCAAACAA
Found at i:51027918 original size:10 final size:9
Alignment explanation
Indices: 51027895--51027965 Score: 63
Period size: 9 Copynumber: 7.7 Consensus size: 9
51027885 ATATAAATTC
51027895 AAAAAAT-A
1 AAAAAATAA
*
51027903 AGAAAATAA
1 AAAAAATAA
51027912 ATAAAAATAA
1 A-AAAAATAA
51027922 AAATAAATATA
1 AAA-AAATA-A
* * **
51027933 TATAAATCC
1 AAAAAATAA
51027942 AAAAAATAA
1 AAAAAATAA
51027951 AAAAAATAA
1 AAAAAATAA
51027960 AAAAAA
1 AAAAAA
51027966 GGGTTTGGGG
Statistics
Matches: 49, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
8 6 0.12
9 24 0.49
10 17 0.35
11 2 0.04
ACGTcount: A:0.79, C:0.03, G:0.01, T:0.17
Consensus pattern (9 bp):
AAAAAATAA
Found at i:51027938 original size:47 final size:45
Alignment explanation
Indices: 51027853--51027963 Score: 138
Period size: 47 Copynumber: 2.4 Consensus size: 45
51027843 AAAAAAGCAT
* *
51027853 AATAAAAAATACATAATAAAATAAAATAAAAGATATAAATTCAAAA
1 AATAAAAAATAAATAA-AAAATAAAATAAAAGATATAAATCCAAAA
*
51027899 AATAAGAAAATAAAT-AAAAATAAAAATAAATATATATAAATCCAAAA
1 AATAA-AAAATAAATAAAAAAT-AAAATAAA-AGATATAAATCCAAAA
51027946 AAT-AAAAA-AAATAAAAAA
1 AATAAAAAATAAATAAAAAA
51027964 AAGGGTTTGG
Statistics
Matches: 58, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
44 4 0.07
45 14 0.24
46 15 0.26
47 25 0.43
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.20
Consensus pattern (45 bp):
AATAAAAAATAAATAAAAAATAAAATAAAAGATATAAATCCAAAA
Found at i:51028402 original size:20 final size:21
Alignment explanation
Indices: 51028355--51028405 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
51028345 TTTGATAAAG
*
51028355 GTATCGATACCTTAGGCTTAA
1 GTATCGATACCTTAGCCTTAA
51028376 GTATCGATACC-TAGCCTTCAA
1 GTATCGATACCTTAGCCTT-AA
51028397 -TATCGATAC
1 GTATCGATAC
51028406 AAATGTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (21 bp):
GTATCGATACCTTAGCCTTAA
Found at i:51028706 original size:20 final size:20
Alignment explanation
Indices: 51028683--51028731 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
51028673 TTTCATATAG
*
51028683 AACCAAAATACTTCAAGTAA
1 AACCAAAATACCTCAAGTAA
51028703 AACCAAAATACCTCAAGTAA
1 AACCAAAATACCTCAAGTAA
51028723 AACCAAAAT
1 AACCAAAAT
51028732 GGATAGAGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.57, C:0.22, G:0.04, T:0.16
Consensus pattern (20 bp):
AACCAAAATACCTCAAGTAA
Found at i:51031145 original size:23 final size:22
Alignment explanation
Indices: 51031111--51031157 Score: 76
Period size: 23 Copynumber: 2.1 Consensus size: 22
51031101 GCAAATTAAT
*
51031111 AGAAAAAGAAGAAAGAAAAGAA
1 AGAAAAAAAAGAAAGAAAAGAA
51031133 AGAAAAATAAAGAAAGAAAAGAA
1 AGAAAAA-AAAGAAAGAAAAGAA
51031156 AG
1 AG
51031158 GAGACCGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (22 bp):
AGAAAAAAAAGAAAGAAAAGAA
Found at i:51035112 original size:113 final size:113
Alignment explanation
Indices: 51034931--51035177 Score: 449
Period size: 113 Copynumber: 2.2 Consensus size: 113
51034921 AATACATGTA
* * *
51034931 AAGGATGTATTGGTACATCTCATAAAAGTAGTTGTTGGTGACTATATTGACACCCATGTATCGAT
1 AAGGATGTATCGATACATCTCATAAAAGTAGTTGTTGGTGACTATATTGACACCCATGTATAGAT
*
51034996 ACATATAGTCATGTATTGGTACATCTAAGGGATGTACCAATATTTCTC
66 ACATATAGTCATGTATTGGTACATCTAAGGGATGTACCAATACTTCTC
*
51035044 AAGGATGTATCGATACATCTCATAAAAGTTGTTGTTGGTGACTATATTGACACCCATGTATAGAT
1 AAGGATGTATCGATACATCTCATAAAAGTAGTTGTTGGTGACTATATTGACACCCATGTATAGAT
51035109 ACATATAGTCATGTATTGGTACATCTAAGGGATGTACCAATACTTCTC
66 ACATATAGTCATGTATTGGTACATCTAAGGGATGTACCAATACTTCTC
51035157 AAGGATGTATCGATACATCTC
1 AAGGATGTATCGATACATCTC
51035178 TTTCCATTAT
Statistics
Matches: 129, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
113 129 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34
Consensus pattern (113 bp):
AAGGATGTATCGATACATCTCATAAAAGTAGTTGTTGGTGACTATATTGACACCCATGTATAGAT
ACATATAGTCATGTATTGGTACATCTAAGGGATGTACCAATACTTCTC
Found at i:51035172 original size:21 final size:21
Alignment explanation
Indices: 51035128--51035177 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
51035118 CATGTATTGG
51035128 TACATCT-AAGGGATGTACCAA
1 TACATCTCAA-GGATGTACCAA
* * *
51035149 TACTTCTCAAGGATGTATCGA
1 TACATCTCAAGGATGTACCAA
51035170 TACATCTC
1 TACATCTC
51035178 TTTCCATTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 22 0.92
22 2 0.08
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (21 bp):
TACATCTCAAGGATGTACCAA
Found at i:51041548 original size:84 final size:83
Alignment explanation
Indices: 51041414--51041600 Score: 293
Period size: 84 Copynumber: 2.2 Consensus size: 83
51041404 CTTAAGCCAT
* * * *
51041414 AAAATGGTACTTAAACTATATTGTTTTTTTTCAAGTTTGTATTTCAACTTTTATTTGGTCGAGTG
1 AAAATGGTACTTAAATTATATTCTTTTTTTTCAAGTTGGTATTTCAACTTTTATTTGGACGAGTG
51041479 GTACCTAAACTATACCAC
66 GTACCTAAACTATACCAC
*
51041497 AAAATGGTACTTAAATTATATCTCTTTTTTTTCAAGTTGGTATTTCAACTTTTTTTTGGACGAGT
1 AAAATGGTACTTAAATTATAT-TCTTTTTTTTCAAGTTGGTATTTCAACTTTTATTTGGACGAGT
* *
51041562 GGTGCCTAAATTATACCAC
65 GGTACCTAAACTATACCAC
*
51041581 AAAATGGTACCTAAATTATA
1 AAAATGGTACTTAAATTATA
51041601 AAAAATTTTC
Statistics
Matches: 95, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
83 20 0.21
84 75 0.79
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.42
Consensus pattern (83 bp):
AAAATGGTACTTAAATTATATTCTTTTTTTTCAAGTTGGTATTTCAACTTTTATTTGGACGAGTG
GTACCTAAACTATACCAC
Found at i:51046767 original size:44 final size:44
Alignment explanation
Indices: 51046704--51046792 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
51046694 AGGAACCACT
51046704 TTCTCAACAAAAATAAATTAAAATGCAAAAGTAGATGATATCTA
1 TTCTCAACAAAAATAAATTAAAATGCAAAAGTAGATGATATCTA
51046748 TTCTCAACAAAAATAAATTAAAATGCAAAAGTAGATGATATCTA
1 TTCTCAACAAAAATAAATTAAAATGCAAAAGTAGATGATATCTA
51046792 T
1 T
51046793 GTTTCTTGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.52, C:0.11, G:0.09, T:0.28
Consensus pattern (44 bp):
TTCTCAACAAAAATAAATTAAAATGCAAAAGTAGATGATATCTA
Found at i:51051148 original size:18 final size:17
Alignment explanation
Indices: 51051102--51051155 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
51051092 TTTCCAATTC
*
51051102 TCAATTCAAATTGACTT
1 TCAATTCAAATTCACTT
* *
51051119 TCATTTCAAAATTTACTT
1 TCAATTC-AAATTCACTT
51051137 TCAATATCAAATTCACTT
1 TCAAT-TCAAATTCACTT
51051155 T
1 T
51051156 TTCATTTACT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
17 6 0.19
18 23 0.74
19 2 0.06
ACGTcount: A:0.35, C:0.19, G:0.02, T:0.44
Consensus pattern (17 bp):
TCAATTCAAATTCACTT
Found at i:51051233 original size:2 final size:2
Alignment explanation
Indices: 51051226--51051262 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
51051216 TAACAATAGA
51051226 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
51051263 TAATATCCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:51052409 original size:18 final size:17
Alignment explanation
Indices: 51052382--51052435 Score: 72
Period size: 18 Copynumber: 3.1 Consensus size: 17
51052372 TAAAAATGAA
51052382 AAAGTGAATTTGATATTG
1 AAAGTGAATTTGA-ATTG
* *
51052400 AAAGTAAATTTTGAAATG
1 AAAGTGAA-TTTGAATTG
51052418 AAAGTGAATTTGAATTG
1 AAAGTGAATTTGAATTG
51052435 A
1 A
51052436 GAATTGGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
17 9 0.29
18 17 0.55
19 5 0.16
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.35
Consensus pattern (17 bp):
AAAGTGAATTTGAATTG
Found at i:51053160 original size:66 final size:66
Alignment explanation
Indices: 51053049--51053176 Score: 170
Period size: 66 Copynumber: 1.9 Consensus size: 66
51053039 GCAGTATAGA
* * * *
51053049 TACAAATGTAAGACCATAGCTGGGCTATGGCATTCTGATGATAAGACCATAATTGGATTATGACA
1 TACAAATGTAAGACCATAGCAGGGCCATGGCATACTGATGATAAGACCATAATTGGACTATGACA
51053114 T
66 T
* *
51053115 TACAAATGTAAGACCATGGCAGGGCCATGGCAATACATG-TG-TAAGACCATAGTTGGACTATG
1 TACAAATGTAAGACCATAGCAGGGCCATGGC-ATAC-TGATGATAAGACCATAATTGGACTATG
51053177 GCACAAAAAG
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
66 47 0.87
67 5 0.09
68 2 0.04
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.26
Consensus pattern (66 bp):
TACAAATGTAAGACCATAGCAGGGCCATGGCATACTGATGATAAGACCATAATTGGACTATGACA
T
Found at i:51053178 original size:33 final size:33
Alignment explanation
Indices: 51053055--51053179 Score: 92
Period size: 33 Copynumber: 3.8 Consensus size: 33
51053045 TAGATACAAA
* *
51053055 TGTAAGACCATAGCTGGGCTATGGC-ATTC-TG
1 TGTAAGACCATAGCTGGACTATGGCAATACATG
** * * * **
51053086 ATGATAAGACCATAATTGGATTATGACATTACAAA
1 -TG-TAAGACCATAGCTGGACTATGGCAATACATG
* * * *
51053121 TGTAAGACCATGGCAGGGCCATGGCAATACATG
1 TGTAAGACCATAGCTGGACTATGGCAATACATG
*
51053154 TGTAAGACCATAGTTGGACTATGGCA
1 TGTAAGACCATAGCTGGACTATGGCA
51053180 CAAAAAGGAC
Statistics
Matches: 65, Mismatches: 25, Indels: 5
0.68 0.26 0.05
Matches are distributed among these distances:
32 2 0.03
33 59 0.91
34 4 0.06
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.26
Consensus pattern (33 bp):
TGTAAGACCATAGCTGGACTATGGCAATACATG
Found at i:51056771 original size:39 final size:39
Alignment explanation
Indices: 51056727--51056801 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
51056717 TGTTTTCGAA
*
51056727 TATTGTGACATATGCTTAAATGTTATGTGATTATATGAG
1 TATTGTGACATATGCTTAAATGTTAGGTGATTATATGAG
* **
51056766 TATTGTGATATATGCTTTTATGTTAGGTGATTATAT
1 TATTGTGACATATGCTTAAATGTTAGGTGATTATAT
51056802 AGGTCGTATG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.28, C:0.04, G:0.20, T:0.48
Consensus pattern (39 bp):
TATTGTGACATATGCTTAAATGTTAGGTGATTATATGAG
Found at i:51056814 original size:39 final size:39
Alignment explanation
Indices: 51056736--51056821 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 39
51056726 ATATTGTGAC
* * *
51056736 ATATGCTTAAATGTTATGTGATTATATGAGTATTGTGAT
1 ATATGCTTAAATGTTAGGTGATTATATGAGTAGTATGAT
** *
51056775 ATATGCTTTTATGTTAGGTGATTATAT-AGGTCGTATGAT
1 ATATGCTTAAATGTTAGGTGATTATATGA-GTAGTATGAT
51056814 ATATGCTT
1 ATATGCTT
51056822 GAAACTGAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
38 1 0.03
39 39 0.98
ACGTcount: A:0.28, C:0.05, G:0.21, T:0.47
Consensus pattern (39 bp):
ATATGCTTAAATGTTAGGTGATTATATGAGTAGTATGAT
Found at i:51062698 original size:50 final size:50
Alignment explanation
Indices: 51062607--51062701 Score: 131
Period size: 50 Copynumber: 1.9 Consensus size: 50
51062597 ATTTGTCACA
*
51062607 TAGGCCTTTCAAATAACTCCCCACAAGGACTTTCTTAATAATATGCCATG
1 TAGGCCTTTCAAATAACTCCCCACAAGGACTTTCTCAATAATATGCCATG
* *
51062657 TAGGCCTTTCAGATAACTCGCCACAAAGG-CTTT-TCAGATAATATG
1 TAGGCCTTTCAAATAACTCCCCAC-AAGGACTTTCTCA-ATAATATG
51062702 TCACGTGGGC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
49 2 0.05
50 34 0.85
51 4 0.10
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (50 bp):
TAGGCCTTTCAAATAACTCCCCACAAGGACTTTCTCAATAATATGCCATG
Found at i:51062726 original size:76 final size:76
Alignment explanation
Indices: 51062637--51062791 Score: 202
Period size: 76 Copynumber: 2.0 Consensus size: 76
51062627 CCACAAGGAC
* * * *
51062637 TTTCTTAATAATATGCCATGTAGGCCTTTCAGATAACTCGCCACAAAGGCTTTTCAGATAATATG
1 TTTCTAAATAATATGCCATATAAGCCTTTCAGATAACTCACCACAAAGGCTTTTCAGATAATATG
* * *
51062702 TCACGTGGGCT
66 CCACATAGGCT
* * * * *
51062713 TTTCTAAATAATATGCCATATAAGTCTTTCTGATAACTTACCACAAATGCTTTTTAGATAATATG
1 TTTCTAAATAATATGCCATATAAGCCTTTCAGATAACTCACCACAAAGGCTTTTCAGATAATATG
51062778 CCACATAGGCT
66 CCACATAGGCT
51062789 TTT
1 TTT
51062792 TAGATAACTC
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
76 67 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (76 bp):
TTTCTAAATAATATGCCATATAAGCCTTTCAGATAACTCACCACAAAGGCTTTTCAGATAATATG
CCACATAGGCT
Found at i:51062772 original size:25 final size:26
Alignment explanation
Indices: 51062744--51062800 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 26
51062734 AAGTCTTTCT
*
51062744 GATAACT-TACCACAAATGCTTTTTA
1 GATAACTATACCACAAAGGCTTTTTA
* *
51062769 GATAA-TATGCCACATAGGCTTTTTA
1 GATAACTATACCACAAAGGCTTTTTA
51062794 GATAACT
1 GATAACT
51062801 CGTCATAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 1 0.04
25 25 0.93
26 1 0.04
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (26 bp):
GATAACTATACCACAAAGGCTTTTTA
Found at i:51064133 original size:16 final size:16
Alignment explanation
Indices: 51064114--51064145 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51064104 TTTCTTCCTC
51064114 AAGCGTACTCTTTCTT
1 AAGCGTACTCTTTCTT
*
51064130 AAGCGTAGTCTTTCTT
1 AAGCGTACTCTTTCTT
51064146 CACTTGAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.44
Consensus pattern (16 bp):
AAGCGTACTCTTTCTT
Found at i:51067708 original size:114 final size:114
Alignment explanation
Indices: 51067508--51067737 Score: 442
Period size: 114 Copynumber: 2.0 Consensus size: 114
51067498 CATTATACAT
51067508 AATTTCACTATCCACTTATATTTAAATTTAAAGCTGTCTAGTCGAGTTATAGTCACTAAATTATT
1 AATTTCACTATCCACTTATATTTAAATTTAAAGCTGTCTAGTCGAGTTATAGTCACTAAATTATT
*
51067573 TTTATCTGGAGCTACAGAGCTCCAAATTAAGTTCTGTTAATTTTCCCCG
66 TTTATCTGGAGCTACAGAGCTCCAAATTAAATTCTGTTAATTTTCCCCG
51067622 AATTTCACTATCCACTTATATTTAAATTTAAAGCTGTCTAGTCGAGTTATAGTCACTAAATTATT
1 AATTTCACTATCCACTTATATTTAAATTTAAAGCTGTCTAGTCGAGTTATAGTCACTAAATTATT
*
51067687 TTTATTTGGAGCTACAGAGCTCCAAATTAAATTCTGTTAATTTTCCCCG
66 TTTATCTGGAGCTACAGAGCTCCAAATTAAATTCTGTTAATTTTCCCCG
51067736 AA
1 AA
51067738 ACTAGACTCA
Statistics
Matches: 114, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
114 114 1.00
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.40
Consensus pattern (114 bp):
AATTTCACTATCCACTTATATTTAAATTTAAAGCTGTCTAGTCGAGTTATAGTCACTAAATTATT
TTTATCTGGAGCTACAGAGCTCCAAATTAAATTCTGTTAATTTTCCCCG
Found at i:51068520 original size:85 final size:85
Alignment explanation
Indices: 51068367--51068566 Score: 294
Period size: 85 Copynumber: 2.4 Consensus size: 85
51068357 ATCCATTACT
* * * * *
51068367 CGGTGGATTCAGCATTTAGCAACCACC-TTAAATTTAGTGATACGGGGAATCAGCACATAGCAAA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTGATACGAGAAATCAGCACATAGCAAA
**
51068431 CCCTTTCACGGTCAAATATA
66 CCCTTTCACAATCAAATATA
* * * *
51068451 GGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACGAGAAATCAGCACATAGCCAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTGATACGAGAAATCAGCACATAGCAAA
51068516 CCCTTTCACAATCAAATATA
66 CCCTTTCACAATCAAATATA
51068536 CGGTGGAATCAGCACTTAGCAACCACCTTTA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTA
51068567 GAATCGATAA
Statistics
Matches: 103, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
84 24 0.23
85 79 0.77
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (85 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTGATACGAGAAATCAGCACATAGCAAA
CCCTTTCACAATCAAATATA
Found at i:51068537 original size:42 final size:43
Alignment explanation
Indices: 51068406--51068565 Score: 148
Period size: 43 Copynumber: 3.7 Consensus size: 43
51068396 AAATTTAGTG
* * **
51068406 ATACGGGGAATCAGCACATAGCAAAC-CCTTTCACGGTCAAAT
1 ATACGTGGAATCAGCACATAGCAACCACCTTTCACAATCAAAT
* * * * *
51068448 ATAGGGTGGAATCAGCACTTAGCAACCACCTTT-ATATTC-AGT
1 ATA-CGTGGAATCAGCACATAGCAACCACCTTTCACAATCAAAT
* * *
51068490 GATACGAGAAATCAGCACATAGCCACC-CCTTTCACAATCAAAT
1 -ATACGTGGAATCAGCACATAGCAACCACCTTTCACAATCAAAT
*
51068533 ATACGGTGGAATCAGCACTTAGCAACCACCTTT
1 ATAC-GTGGAATCAGCACATAGCAACCACCTTT
51068566 AGAATCGATA
Statistics
Matches: 91, Mismatches: 20, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
41 5 0.05
42 31 0.34
43 45 0.49
44 10 0.11
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (43 bp):
ATACGTGGAATCAGCACATAGCAACCACCTTTCACAATCAAAT
Found at i:51068618 original size:25 final size:26
Alignment explanation
Indices: 51068580--51068629 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
51068570 TCGATAATTT
51068580 GGGGAATCAGCACTTAAC-ACCCCTC
1 GGGGAATCAGCACTTAACGACCCCTC
*
51068605 GGGGAATCTA-CACTTAGCGACCCCT
1 GGGGAATC-AGCACTTAACGACCCCT
51068630 TTTTATCCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.26, C:0.34, G:0.22, T:0.18
Consensus pattern (26 bp):
GGGGAATCAGCACTTAACGACCCCTC
Found at i:51069001 original size:30 final size:30
Alignment explanation
Indices: 51068966--51069023 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
51068956 TCCTTAACTC
51068966 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
51068996 AAACTTTTGCATATTTACACTTTTGCCC
1 AAACTTTGGCAAAATTACAATTTTGCCC
51069024 TAAGCTCAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:51074370 original size:11 final size:11
Alignment explanation
Indices: 51074354--51074398 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
51074344 CTTAATAACT
51074354 TTAATATTAAA
1 TTAATATTAAA
51074365 TTAATA-TAAA
1 TTAATATTAAA
* *
51074375 TATTATATTAAT
1 T-TAATATTAAA
51074387 TTAATATTAAA
1 TTAATATTAAA
51074398 T
1 T
51074399 CTCATTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
10 5 0.18
11 19 0.68
12 4 0.14
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
TTAATATTAAA
Found at i:51074390 original size:5 final size:6
Alignment explanation
Indices: 51074354--51074396 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
51074344 CTTAATAACT
*
51074354 TTAATA TTAA-A TTAATA TAAATA TT-ATA TTAAT- TTAATA TTAA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAA
51074397 ATCTCATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
5 15 0.47
6 17 0.53
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
TTAATA
Found at i:51074606 original size:23 final size:23
Alignment explanation
Indices: 51074572--51074619 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
51074562 CAACCATCGC
* **
51074572 CAGCCACTGGAACGTCGCTGTTG
1 CAGCCACCGGAACACCGCTGTTG
51074595 CAGCCACCGGAACACCGCTGTTG
1 CAGCCACCGGAACACCGCTGTTG
51074618 CA
1 CA
51074620 CCCATCGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.21, C:0.35, G:0.27, T:0.17
Consensus pattern (23 bp):
CAGCCACCGGAACACCGCTGTTG
Found at i:51078588 original size:68 final size:68
Alignment explanation
Indices: 51078516--51078661 Score: 181
Period size: 68 Copynumber: 2.1 Consensus size: 68
51078506 GGGTAAGAAT
* *
51078516 CCATGTTTAATGTCTTGGCGAACT-C-TATATGTATCCAAATGT-GAGCTATGATCTTACACATT
1 CCATGTTTAATGTCCTAGCGAACTCCATATAT-TAT-CAAA-GTCGAGCTATGATCTTACACATT
51078578 TTAACC
63 TTAACC
* * * * *
51078584 CCATGTTTAATGTCCTAGTGAACTCCATATATTGTCATAGTCGAGTTATGGTCTTACACATTTTA
1 CCATGTTTAATGTCCTAGCGAACTCCATATATTATCAAAGTCGAGCTATGATCTTACACATTTTA
51078649 ACC
66 ACC
51078652 CCATGTTTAA
1 CCATGTTTAA
51078662 CACCCTTGCG
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
67 2 0.03
68 58 0.85
69 3 0.04
70 5 0.07
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (68 bp):
CCATGTTTAATGTCCTAGCGAACTCCATATATTATCAAAGTCGAGCTATGATCTTACACATTTTA
ACC
Found at i:51080814 original size:208 final size:208
Alignment explanation
Indices: 51080456--51080869 Score: 693
Period size: 208 Copynumber: 2.0 Consensus size: 208
51080446 ATGATATTCT
* *
51080456 TCATGAATTTGACATAATTGGGCATTTTCTCCAGAGCTTTCACCAATGGGATATTGATGTGAAGT
1 TCATGAATTTGACATAATTGGGCATTTTCTCCAGAGCTTCCACCAATGGGATATTGATGTAAAGT
*
51080521 TGTTTAAGTATGTCCAAGAACTTCTTGAATTGAACCTCTTACTTCTGTTGCTAGAGTCTTTGATA
66 TGTTTAAGTATGTCCAAGAACTTCTTGAATTGAACCTCTTACTTCTGTTACTAGAGTCTTTGATA
* * *
51080586 ATAAAGAGGTGATAGAATTTTAGCTTTAACTAGACAGCTCTTCTATGGTAGTTCTTCTGCATTTG
131 ATAAAGAGGTGATAGAATTTTAGCTTTAACTAGACAGATCTTCTACGGTAATTCTTCTGCATTTG
* *
51080651 TCGTAGATGTTAA
196 TCATAAATGTTAA
* *
51080664 TCATGAATTTGACATAATTGGGCATTTTTTCTAGAGCTTCCACCAATGGGATATTGATGTAAAGT
1 TCATGAATTTGACATAATTGGGCATTTTCTCCAGAGCTTCCACCAATGGGATATTGATGTAAAGT
*
51080729 TGTTTAAGTATGTCCAAGAACTTCTTGAATTGAACCTCTTGCTTCTGTTACTAGAGTCTTTGATA
66 TGTTTAAGTATGTCCAAGAACTTCTTGAATTGAACCTCTTACTTCTGTTACTAGAGTCTTTGATA
* * * *
51080794 ATAAAGAGGTGGTGGAATTTTAGCTTTAACTGGACAGATCTTCTGCGGTAATTCTTCTGCATTTG
131 ATAAAGAGGTGATAGAATTTTAGCTTTAACTAGACAGATCTTCTACGGTAATTCTTCTGCATTTG
51080859 TCATAAATGTT
196 TCATAAATGTT
51080870 GAACTTTTAA
Statistics
Matches: 191, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
208 191 1.00
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.39
Consensus pattern (208 bp):
TCATGAATTTGACATAATTGGGCATTTTCTCCAGAGCTTCCACCAATGGGATATTGATGTAAAGT
TGTTTAAGTATGTCCAAGAACTTCTTGAATTGAACCTCTTACTTCTGTTACTAGAGTCTTTGATA
ATAAAGAGGTGATAGAATTTTAGCTTTAACTAGACAGATCTTCTACGGTAATTCTTCTGCATTTG
TCATAAATGTTAA
Found at i:51091874 original size:28 final size:28
Alignment explanation
Indices: 51091842--51091895 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
51091832 CAGTAACAGT
*
51091842 ACAGTGTGGGCCTTAGCCCAATACAGAA
1 ACAGTGTGGGCCTAAGCCCAATACAGAA
51091870 ACAGTGTGGGCCTAAGCCCAATACAG
1 ACAGTGTGGGCCTAAGCCCAATACAG
51091896 TATCAGTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.31, C:0.26, G:0.26, T:0.17
Consensus pattern (28 bp):
ACAGTGTGGGCCTAAGCCCAATACAGAA
Found at i:51091902 original size:28 final size:27
Alignment explanation
Indices: 51091837--51091902 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 27
51091827 CTTAACAGTA
*
51091837 ACAGTACAGTGTGGGCCTTAGCCCAAT
1 ACAGTACAGTGTGGGCCTAAGCCCAAT
*
51091864 ACAGAAACAGTGTGGGCCTAAGCCCAAT
1 ACAG-TACAGTGTGGGCCTAAGCCCAAT
51091892 ACAGTATCAGT
1 ACAGTA-CAGT
51091903 ATGGTGCAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 5 0.15
28 29 0.85
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.20
Consensus pattern (27 bp):
ACAGTACAGTGTGGGCCTAAGCCCAAT
Found at i:51092221 original size:64 final size:64
Alignment explanation
Indices: 51092112--51092270 Score: 176
Period size: 64 Copynumber: 2.5 Consensus size: 64
51092102 TAATTTGATT
* * *
51092112 GGCACAAAGCCATCAG-AAGCAGTGATATGACCGACACGCAGCCATCAGTAACGGTAACATGAAC
1 GGCACAAAGCCATCAGTAA-CAGTGATATGATCGACACACAACCATCAGTAACGGTAACATGAAC
** * * * **
51092176 GGCACAAAGCCATCAGTAACAGTGATATGATCGGTACACAACCATCAGTAATGGTGATATGATT
1 GGCACAAAGCCATCAGTAACAGTGATATGATCGACACACAACCATCAGTAACGGTAACATGAAC
* * * *
51092240 GGCACACAGCCATCGGTAATAGTAATATGAT
1 GGCACAAAGCCATCAGTAACAGTGATATGAT
51092271 TGGAAAAAAT
Statistics
Matches: 80, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
64 78 0.98
65 2 0.03
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (64 bp):
GGCACAAAGCCATCAGTAACAGTGATATGATCGACACACAACCATCAGTAACGGTAACATGAAC
Found at i:51092259 original size:32 final size:32
Alignment explanation
Indices: 51092107--51092273 Score: 138
Period size: 32 Copynumber: 5.2 Consensus size: 32
51092097 TTCAGTAATT
* *
51092107 TGATTGGCACAAAGCCATCAG-AAGCAGTGATA
1 TGATTGGCACACAGCCATCAGTAA-TAGTGATA
** * * ** * *
51092139 TGACCGACACGCAGCCATCAGTAACGGTAACA
1 TGATTGGCACACAGCCATCAGTAATAGTGATA
** * *
51092171 TGAACGGCACAAAGCCATCAGTAACAGTGATA
1 TGATTGGCACACAGCCATCAGTAATAGTGATA
* * * *
51092203 TGATCGGTACACAACCATCAGTAATGGTGATA
1 TGATTGGCACACAGCCATCAGTAATAGTGATA
* *
51092235 TGATTGGCACACAGCCATCGGTAATAGTAATA
1 TGATTGGCACACAGCCATCAGTAATAGTGATA
51092267 TGATTGG
1 TGATTGG
51092274 AAAAAATCTA
Statistics
Matches: 107, Mismatches: 27, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
32 105 0.98
33 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.20
Consensus pattern (32 bp):
TGATTGGCACACAGCCATCAGTAATAGTGATA
Found at i:51092950 original size:26 final size:27
Alignment explanation
Indices: 51092668--51092943 Score: 283
Period size: 27 Copynumber: 10.4 Consensus size: 27
51092658 TTACCTTATT
* * * *
51092668 AGGGTATTTCGATAATTTTATCCTTTG
1 AGGGTATTTCAATAATTTTACCCATCG
* * *
51092695 GGGGTATTTCGATAATTTTACCTATCG
1 AGGGTATTTCAATAATTTTACCCATCG
* ** *
51092722 TGGGTATTTTGATAATTTTACCCATCA
1 AGGGTATTTCAATAATTTTACCCATCG
* *
51092749 AGGGTATTTCAATAATTTTACACTTCG
1 AGGGTATTTCAATAATTTTACCCATCG
* * *
51092776 ACGGTATTTCAATAATTTTACCTATAG
1 AGGGTATTTCAATAATTTTACCCATCG
* ** *
51092803 AAGGTATTTCGGTAATTTTACCCATCA
1 AGGGTATTTCAATAATTTTACCCATCG
* *
51092830 AGGGTATTTCAGTAA-TTTACCCATTG
1 AGGGTATTTCAATAATTTTACCCATCG
*
51092856 AGGGTATTTCAATAA-TTTACCCATTG
1 AGGGTATTTCAATAATTTTACCCATCG
51092882 AGGGTATCTT-AATAA-TTTACCCATCG
1 AGGGTAT-TTCAATAATTTTACCCATCG
* *
51092908 AGGGTATTTCAGTAA-TTTACCCATCA
1 AGGGTATTTCAATAATTTTACCCATCG
51092934 AGGGTATTTC
1 AGGGTATTTC
51092944 GGTAATTCAG
Statistics
Matches: 213, Mismatches: 34, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
25 2 0.01
26 87 0.41
27 124 0.58
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCAATAATTTTACCCATCG
Found at i:51096431 original size:16 final size:16
Alignment explanation
Indices: 51096407--51096437 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51096397 TAATTCTGAG
*
51096407 CATGGCATACTGCATA
1 CATGACATACTGCATA
51096423 CATGACATACTGCAT
1 CATGACATACTGCAT
51096438 GGGGTTGGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (16 bp):
CATGACATACTGCATA
Found at i:51097507 original size:28 final size:28
Alignment explanation
Indices: 51097456--51097509 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
51097446 CAGTAACAGT
* *
51097456 ACAGTGTGGGCCTTAGCCTAATACAGAA
1 ACAGTGTGGGCCTAAGCCCAATACAGAA
*
51097484 ACAGTGTGGGCCTAAGCCCGATACAG
1 ACAGTGTGGGCCTAAGCCCAATACAG
51097510 TATCAGTATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.30, C:0.24, G:0.28, T:0.19
Consensus pattern (28 bp):
ACAGTGTGGGCCTAAGCCCAATACAGAA
Found at i:51097516 original size:28 final size:27
Alignment explanation
Indices: 51097451--51097516 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 27
51097441 TTTAACAGTA
* *
51097451 ACAGTACAGTGTGGGCCTTAGCCTAAT
1 ACAGTACAGTGTGGGCCTAAGCCCAAT
* *
51097478 ACAGAAACAGTGTGGGCCTAAGCCCGAT
1 ACAG-TACAGTGTGGGCCTAAGCCCAAT
51097506 ACAGTATCAGT
1 ACAGTA-CAGT
51097517 ATGGTGCAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
27 5 0.16
28 27 0.84
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (27 bp):
ACAGTACAGTGTGGGCCTAAGCCCAAT
Found at i:51097756 original size:32 final size:32
Alignment explanation
Indices: 51097713--51097810 Score: 115
Period size: 32 Copynumber: 3.1 Consensus size: 32
51097703 GCCATAACTA
* *
51097713 CAGTAATATGATTGGTACAAAGCCATCAGTAG
1 CAGTAATATGATAGGCACAAAGCCATCAGTAG
* * * *
51097745 CAGTGATATGATCGGCACACAGCCATCAGTAA
1 CAGTAATATGATAGGCACAAAGCCATCAGTAG
* * *
51097777 CGGTAATATGATAGACACAAAGCTATCAGTAG
1 CAGTAATATGATAGGCACAAAGCCATCAGTAG
51097809 CA
1 CA
51097811 TCGTAGCAAA
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 53 1.00
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.21
Consensus pattern (32 bp):
CAGTAATATGATAGGCACAAAGCCATCAGTAG
Found at i:51097857 original size:27 final size:27
Alignment explanation
Indices: 51097825--51097888 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
51097815 AGCAAAGCTG
*
51097825 CCAGTAATAGT-ATATGTGGCCA-AGCCA
1 CCAGTAACAGTGAT-TGTGG-CAGAGCCA
*
51097852 CTAGTAACAGTGATTGTGGCAGAGCCA
1 CCAGTAACAGTGATTGTGGCAGAGCCA
51097879 CCAGT-ACAGT
1 CCAGTAACAGT
51097889 ACTTCCTCCA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
26 7 0.22
27 23 0.72
28 2 0.06
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (27 bp):
CCAGTAACAGTGATTGTGGCAGAGCCA
Found at i:51097985 original size:24 final size:23
Alignment explanation
Indices: 51097953--51098011 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 23
51097943 CCATGCTTAG
51097953 AATCAGTCATTCAAATCACAGACA
1 AATCAGTCATTCAAA-CACAGACA
* *
51097977 AATCAGTCATACCAAACATAGACA
1 AATCAGTCAT-TCAAACACAGACA
51098001 AATCAGTCATT
1 AATCAGTCATT
51098012 TGACCTCGAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 27 0.87
25 4 0.13
ACGTcount: A:0.46, C:0.24, G:0.08, T:0.22
Consensus pattern (23 bp):
AATCAGTCATTCAAACACAGACA
Found at i:51098089 original size:27 final size:27
Alignment explanation
Indices: 51098051--51098282 Score: 293
Period size: 27 Copynumber: 8.6 Consensus size: 27
51098041 CCACCAGGAC
*
51098051 ATTACAGTTATTTTACCCTACAGGGGT
1 ATTACGGTTATTTTACCCTACAGGGGT
* * *
51098078 ATTACTGTTATTTTAACCTACAGGGGC
1 ATTACGGTTATTTTACCCTACAGGGGT
51098105 ATTACGGTTATTTTACCCTACAGGGGT
1 ATTACGGTTATTTTACCCTACAGGGGT
* * *
51098132 ATTATGGTTATTTTACCCTACAGAGGC
1 ATTACGGTTATTTTACCCTACAGGGGT
* *
51098159 ATTACGGTCATTTTACCATACAGGGGT
1 ATTACGGTTATTTTACCCTACAGGGGT
* *
51098186 ATTACGGTTATTTTACCCTACAAGGGC
1 ATTACGGTTATTTTACCCTACAGGGGT
* * **
51098213 ATTACGGTCATTTTATCCTACAGCAGT
1 ATTACGGTTATTTTACCCTACAGGGGT
* * *
51098240 ACTACGGTCATTTTACCCTACAGGGTT
1 ATTACGGTTATTTTACCCTACAGGGGT
*
51098267 ATTACGGTCATTTTAC
1 ATTACGGTTATTTTAC
51098283 AACCTTTCCG
Statistics
Matches: 175, Mismatches: 30, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 175 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
ATTACGGTTATTTTACCCTACAGGGGT
Found at i:51099293 original size:32 final size:32
Alignment explanation
Indices: 51099243--51099389 Score: 132
Period size: 32 Copynumber: 4.6 Consensus size: 32
51099233 TTTAGTAATG
* * * *
51099243 TGATTGGCACAAAACCATCAGTAGCAGTGATA
1 TGATCGGCACACAGCCATCAGTAACAGTGATA
* * *
51099275 TGATCGGCACACAGCCATCAGTAACGGTAACA
1 TGATCGGCACACAGCCATCAGTAACAGTGATA
* * * *
51099307 TGATCGGCATAAAGCCATCAGTAGCAGGGATA
1 TGATCGGCACACAGCCATCAGTAACAGTGATA
* * * **
51099339 TGACCAGCACACAGCCATCGGTAATGGTGATA
1 TGATCGGCACACAGCCATCAGTAACAGTGATA
* *
51099371 TGACCGGCACACATCCATC
1 TGATCGGCACACAGCCATC
51099390 GATAAAGGTA
Statistics
Matches: 90, Mismatches: 25, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
32 90 1.00
ACGTcount: A:0.33, C:0.25, G:0.23, T:0.18
Consensus pattern (32 bp):
TGATCGGCACACAGCCATCAGTAACAGTGATA
Found at i:51099339 original size:64 final size:64
Alignment explanation
Indices: 51099243--51099381 Score: 179
Period size: 64 Copynumber: 2.2 Consensus size: 64
51099233 TTTAGTAATG
* * * *
51099243 TGATTGGCACAAAACCATCAGTAGCAGTGATATGATCGGCACACAGCCATCAGTAACGGTAACA
1 TGATCGGCACAAAACCATCAGTAGCAGGGATATGACCAGCACACAGCCATCAGTAACGGTAACA
* * * * * *
51099307 TGATCGGCATAAAGCCATCAGTAGCAGGGATATGACCAGCACACAGCCATCGGTAATGGTGATA
1 TGATCGGCACAAAACCATCAGTAGCAGGGATATGACCAGCACACAGCCATCAGTAACGGTAACA
*
51099371 TGACCGGCACA
1 TGATCGGCACA
51099382 CATCCATCGA
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.18
Consensus pattern (64 bp):
TGATCGGCACAAAACCATCAGTAGCAGGGATATGACCAGCACACAGCCATCAGTAACGGTAACA
Found at i:51099390 original size:32 final size:31
Alignment explanation
Indices: 51099243--51099413 Score: 123
Period size: 32 Copynumber: 5.4 Consensus size: 31
51099233 TTTAGTAATG
* * *
51099243 TGATTGGCACAAAACCATCAGT-AGCAGTGATA
1 TGATCGGCACACAGCCATCAGTAAG--GTGATA
* *
51099275 TGATCGGCACACAGCCATCAGTAACGGTAACA
1 TGATCGGCACACAGCCATCAGTAA-GGTGATA
* *
51099307 TGATCGGCATAAAGCCATCAGTAGCAGG-GATA
1 TGATCGGCACACAGCCATCAGTA--AGGTGATA
* * *
51099339 TGACCAGCACACAGCCATCGGTAATGGTGATA
1 TGATCGGCACACAGCCATCAGTAA-GGTGATA
* * * *
51099371 TGACCGGCACACATCCATC-GATAAAGGTAAAA
1 TGATCGGCACACAGCCATCAG-T-AAGGTGATA
51099403 TGATCGGCACA
1 TGATCGGCACA
51099414 TCCCTCTACA
Statistics
Matches: 112, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
30 1 0.01
31 3 0.03
32 101 0.90
33 5 0.04
34 2 0.02
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (31 bp):
TGATCGGCACACAGCCATCAGTAAGGTGATA
Found at i:51100148 original size:21 final size:21
Alignment explanation
Indices: 51100123--51100162 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
51100113 TTATTTGGAC
* *
51100123 TTTTAACCGACACTTATAATT
1 TTTTAACCAACACATATAATT
51100144 TTTTAACCAACACATATAA
1 TTTTAACCAACACATATAA
51100163 CTTATCCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.20, G:0.03, T:0.38
Consensus pattern (21 bp):
TTTTAACCAACACATATAATT
Found at i:51112296 original size:63 final size:61
Alignment explanation
Indices: 51112223--51112400 Score: 185
Period size: 63 Copynumber: 2.8 Consensus size: 61
51112213 CTCAAATATA
* * * * * *
51112223 AACTTAGTGAGTCATACGACCTGGACACAAGTCCATATGTCTCACTCGTGTGACTCTAACATG
1 AACTCAGTGAGTTACACG-CCTGGACACATG-CCGTGTGTCTCACTCGTGTGACTCTAACATG
* * * * **
51112286 AACTCAGTGAGTTACACGGCTCGAACACATGCTCGTGTTTCTCACCCGTGTGACTCTAGTATG
1 AACTCAGTGAGTTACACGCCT-GGACACATGC-CGTGTGTCTCACTCGTGTGACTCTAACATG
*
51112349 AACTCAGTGAGTTACACGGCCTGGACACATGCCCGTGTGTCTCACTTGTGTG
1 AACTCAGTGAGTTACAC-GCCTGGACACATG-CCGTGTGTCTCACTCGTGTG
51112401 GCCCCTACAT
Statistics
Matches: 94, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
62 3 0.03
63 87 0.93
64 4 0.04
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (61 bp):
AACTCAGTGAGTTACACGCCTGGACACATGCCGTGTGTCTCACTCGTGTGACTCTAACATG
Done.