Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 174 of 205
Found at i:51698627 original size:18 final size:18
Alignment explanation
Indices: 51698593--51698626 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
51698583 AATTGGTTAT
*
51698593 TTTTATTATTTTATTTTA
1 TTTTATTATTTGATTTTA
51698611 TTTTATT-TTTGATTTT
1 TTTTATTATTTGATTTT
51698627 TGGTAAAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (18 bp):
TTTTATTATTTGATTTTA
Found at i:51699517 original size:21 final size:21
Alignment explanation
Indices: 51699477--51699566 Score: 76
Period size: 21 Copynumber: 4.3 Consensus size: 21
51699467 CACGGTCTAC
*
51699477 CCACACAATCGTGTAC-CTCAG
1 CCACACAAGCGTGT-CTCTCAG
** *
51699498 TTACACAAGCGTGTCTCTCAA
1 CCACACAAGCGTGTCTCTCAG
*
51699519 CCACAC-AGCTGTGTCTCTTAG
1 CCACACAAGC-GTGTCTCTCAG
* *
51699540 GCACACGAGCGTGTCTCTCAG
1 CCACACAAGCGTGTCTCTCAG
*
51699561 ACACAC
1 CCACAC
51699567 GACCATGTAT
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
20 4 0.07
21 48 0.87
22 3 0.05
ACGTcount: A:0.26, C:0.34, G:0.18, T:0.22
Consensus pattern (21 bp):
CCACACAAGCGTGTCTCTCAG
Found at i:51699567 original size:21 final size:21
Alignment explanation
Indices: 51699500--51699568 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
51699490 TACCTCAGTT
*
51699500 ACACAAGCGTGTCTCTCA-ACC
1 ACACGAGCGTGTCTCTCAGA-C
* *
51699521 ACAC-AGCTGTGTCTCTTAGGC
1 ACACGAGC-GTGTCTCTCAGAC
51699542 ACACGAGCGTGTCTCTCAGAC
1 ACACGAGCGTGTCTCTCAGAC
51699563 ACACGA
1 ACACGA
51699569 CCATGTATTC
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 3 0.07
21 35 0.85
22 3 0.07
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.20
Consensus pattern (21 bp):
ACACGAGCGTGTCTCTCAGAC
Found at i:51699883 original size:22 final size:22
Alignment explanation
Indices: 51699833--51699886 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
51699823 TGTTATGTGT
* *
51699833 TTGTTTATATAAACAATTTTGG
1 TTGTTTGTGTAAACAATTTTGG
51699855 TTGTTTGTGTAAACAATTTTGG
1 TTGTTTGTGTAAACAATTTTGG
51699877 TTGTTTGTGT
1 TTGTTTGTGT
51699887 GATAGTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.22, C:0.04, G:0.20, T:0.54
Consensus pattern (22 bp):
TTGTTTGTGTAAACAATTTTGG
Found at i:51706994 original size:18 final size:18
Alignment explanation
Indices: 51706971--51707007 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
51706961 CGGTTGATGG
* *
51706971 TTTATTTATTCATGTAAT
1 TTTATTAATTCATCTAAT
51706989 TTTATTAATTCATCTAAT
1 TTTATTAATTCATCTAAT
51707007 T
1 T
51707008 GGACAATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.59
Consensus pattern (18 bp):
TTTATTAATTCATCTAAT
Found at i:51708822 original size:483 final size:483
Alignment explanation
Indices: 51707916--51708880 Score: 1930
Period size: 483 Copynumber: 2.0 Consensus size: 483
51707906 TTATATTCAT
51707916 AATAAATAGGGCCTACGAGACCCAATACATACCCATGCAATTCAATGTTTCATTTCTATTTCATT
1 AATAAATAGGGCCTACGAGACCCAATACATACCCATGCAATTCAATGTTTCATTTCTATTTCATT
51707981 CAGTTCACAATTTCTCATGCTCACAATTCAAATTATATCACTAGCAATTTCCATTTAATTCATGT
66 CAGTTCACAATTTCTCATGCTCACAATTCAAATTATATCACTAGCAATTTCCATTTAATTCATGT
51708046 ACAATTCAATATTAGTAAGTTCAATACTAATACGTATTTACCATTTAACTCAACGTTTTTCGATT
131 ACAATTCAATATTAGTAAGTTCAATACTAATACGTATTTACCATTTAACTCAACGTTTTTCGATT
51708111 ATACCATTCATTAACACATTTATGAAATTCTCAATTTTGCAATGAAAATATCACTTTATCTTAAA
196 ATACCATTCATTAACACATTTATGAAATTCTCAATTTTGCAATGAAAATATCACTTTATCTTAAA
51708176 TAACAACATCAATTCAACTCATCATCCCCTTTTTCGTCATTTTTCACTTCAAATATGAACTTACT
261 TAACAACATCAATTCAACTCATCATCCCCTTTTTCGTCATTTTTCACTTCAAATATGAACTTACT
51708241 ATTTCATTACCTTTCTACACCCGTTTCCTATGCATATCATTAAGACATAAACATATCGTTCAACC
326 ATTTCATTACCTTTCTACACCCGTTTCCTATGCATATCATTAAGACATAAACATATCGTTCAACC
51708306 ATAGTCGCAAGCTAGTTCATTTAAGCATAATTCTTTTTGGAACTAACCACATGATAAACCATTTC
391 ATAGTCGCAAGCTAGTTCATTTAAGCATAATTCTTTTTGGAACTAACCACATGATAAACCATTTC
51708371 ACTAGAGATTACATAATTTAAACCTTAC
456 ACTAGAGATTACATAATTTAAACCTTAC
51708399 AATAAATAGGGCCTACGAGACCCAATACATACCCATGCAATTCAATGTTTCATTTCTATTTCATT
1 AATAAATAGGGCCTACGAGACCCAATACATACCCATGCAATTCAATGTTTCATTTCTATTTCATT
51708464 CAGTTCACAATTTCTCATGCTCACAATTCAAATTATATCACTAGCAATTTCCATTTAATTCATGT
66 CAGTTCACAATTTCTCATGCTCACAATTCAAATTATATCACTAGCAATTTCCATTTAATTCATGT
51708529 ACAATTCAATATTAGTAAGTTCAATACTAATACGTATTTACCATTTAACTCAACGTTTTTCGATT
131 ACAATTCAATATTAGTAAGTTCAATACTAATACGTATTTACCATTTAACTCAACGTTTTTCGATT
51708594 ATACCATTCATTAACACATTTATGAAATTCTCAATTTTGCAATGAAAATATCACTTTATCTTAAA
196 ATACCATTCATTAACACATTTATGAAATTCTCAATTTTGCAATGAAAATATCACTTTATCTTAAA
51708659 TAACAACATCAATTCAACTCATCATCCCCTTTTTCGTCATTTTTCACTTCAAATATGAACTTACT
261 TAACAACATCAATTCAACTCATCATCCCCTTTTTCGTCATTTTTCACTTCAAATATGAACTTACT
51708724 ATTTCATTACCTTTCTACACCCGTTTCCTATGCATATCATTAAGACATAAACATATCGTTCAACC
326 ATTTCATTACCTTTCTACACCCGTTTCCTATGCATATCATTAAGACATAAACATATCGTTCAACC
51708789 ATAGTCGCAAGCTAGTTCATTTAAGCATAATTCTTTTTGGAACTAACCACATGATAAACCATTTC
391 ATAGTCGCAAGCTAGTTCATTTAAGCATAATTCTTTTTGGAACTAACCACATGATAAACCATTTC
51708854 ACTAGAGATTACATAATTTAAACCTTA
456 ACTAGAGATTACATAATTTAAACCTTA
51708881 TCACCCCTGT
Statistics
Matches: 482, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
483 482 1.00
ACGTcount: A:0.34, C:0.22, G:0.07, T:0.36
Consensus pattern (483 bp):
AATAAATAGGGCCTACGAGACCCAATACATACCCATGCAATTCAATGTTTCATTTCTATTTCATT
CAGTTCACAATTTCTCATGCTCACAATTCAAATTATATCACTAGCAATTTCCATTTAATTCATGT
ACAATTCAATATTAGTAAGTTCAATACTAATACGTATTTACCATTTAACTCAACGTTTTTCGATT
ATACCATTCATTAACACATTTATGAAATTCTCAATTTTGCAATGAAAATATCACTTTATCTTAAA
TAACAACATCAATTCAACTCATCATCCCCTTTTTCGTCATTTTTCACTTCAAATATGAACTTACT
ATTTCATTACCTTTCTACACCCGTTTCCTATGCATATCATTAAGACATAAACATATCGTTCAACC
ATAGTCGCAAGCTAGTTCATTTAAGCATAATTCTTTTTGGAACTAACCACATGATAAACCATTTC
ACTAGAGATTACATAATTTAAACCTTAC
Found at i:51711841 original size:102 final size:102
Alignment explanation
Indices: 51711612--51711956 Score: 509
Period size: 102 Copynumber: 3.4 Consensus size: 102
51711602 CTATTATCAT
* * * * * * * *
51711612 TCGATACACGTAATAGCCTTCACATAGTACTACACACGTGA-TCAA-TTTTTACGGTTCACGTAA
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGAGTAAAGCTTTT-CGATACACATAG
* * * *
51711675 TAGCCTTCACATAGTACTATACATGTGATCAAGT-TTTA
65 TAGCCTTCACTTAGTACTACACATGTGA-CCATTATTTA
*
51711713 -CGATTCACGTAGTAGCCTTCACATAGTACTACATACGTGAGTAAAGCTTTTCGATACACATAGT
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGAGTAAAGCTTTTCGATACACATAGT
51711777 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
*
51711814 TCGATTCACGTAGTAGCCTTCACATAGTACTACATACGTGAGTAAAGCTTTTCGATACACATAGT
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGAGTAAAGCTTTTCGATACACATAGT
51711879 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
*
51711916 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGA
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGA
51711957 CCAACATTTT
Statistics
Matches: 225, Mismatches: 15, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
100 40 0.18
101 41 0.18
102 144 0.64
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (102 bp):
TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGAGTAAAGCTTTTCGATACACATAGT
AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
Found at i:51711930 original size:153 final size:149
Alignment explanation
Indices: 51711611--51711959 Score: 423
Period size: 153 Copynumber: 2.3 Consensus size: 149
51711601 ACTATTATCA
* * *
51711611 TTCGATACACGTAATAGCCTTCACATAGTACTACACACGTGATCAATTTTTACGGTTCACGTAAT
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGA-CCATTTTTACGATTCACGTAAT
* * * * *
51711676 AGCCTTCACATAGTACTATACATGTGATCAAGTTTTACGATTCACGTAGTAGCCTTCACATAGTA
65 AGCCTTCACATAGTACTACACACGTGATAAAGTTTTACGATACACATAGTAGCCTTCACATAGTA
* **
51711741 CTACATACGTGAGTAAAGCTT
130 CTACACACGTGACCAAA-CTT
* * * *
51711762 TTCGATACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATTCACGTAG
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCATT-TTTA-CGATTCACGTAA
* *
51711827 TAGCCTTCACATAGTACTACATACGTGAGTAAAGCTTTT-CGATACACATAGTAGCCTTCACTTA
64 TAGCCTTCACATAGTACTACACACGTGA-TAAAG-TTTTACGATACACATAGTAGCCTTCACATA
* *
51711891 GTACTACACATGTGACCATTA-TT
127 GTACTACACACGTGACCA-AACTT
* *
51711914 TATCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCA
1 T-TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCA
51711960 ACATTTTCAC
Statistics
Matches: 168, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
150 4 0.02
151 42 0.25
152 38 0.23
153 79 0.47
154 5 0.03
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (149 bp):
TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCATTTTTACGATTCACGTAATA
GCCTTCACATAGTACTACACACGTGATAAAGTTTTACGATACACATAGTAGCCTTCACATAGTAC
TACACACGTGACCAAACTT
Found at i:51711957 original size:51 final size:51
Alignment explanation
Indices: 51711612--51711959 Score: 352
Period size: 51 Copynumber: 6.9 Consensus size: 51
51711602 CTATTATCAT
* * *
51711612 TCGATACACGTAATAGCCTTCACATAGTACTACACACGTGATCAATT-TTTA
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGA-CCATTATTTA
* * * * * *
51711663 -CGGTTCACGTAATAGCCTTCACATAGTACTATACATGTGATCAAGT-TTTA
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGA-CCATTATTTA
* ** *
51711713 -CGATTCACGTAGTAGCCTTCACATAGTACTACATACGTGAGTA-AAGCTTT-
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCATTA--TTTA
* * * *
51711763 TCGATACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTA
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCATTATTTA
* ** *
51711814 TCGATTCACGTAGTAGCCTTCACATAGTACTACATACGTGAGTA-AAGCTTT-
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCATTA--TTTA
* * * *
51711865 TCGATACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTA
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCATTATTTA
*
51711916 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCA
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCA
51711960 ACATTTTCAC
Statistics
Matches: 245, Mismatches: 42, Indels: 20
0.80 0.14 0.07
Matches are distributed among these distances:
49 1 0.00
50 87 0.36
51 152 0.62
52 5 0.02
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (51 bp):
TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCATTATTTA
Found at i:51713210 original size:41 final size:41
Alignment explanation
Indices: 51713153--51713303 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
51713143 TAGCAACCGC
* ** *
51713153 TCGGGGAATCAGCACTTAGCAACCCCTTTTTTATCAGTGAT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTCGATCAATGAT
51713194 TCGGGGAATCTGCACTTAGCAACCCCTTTTCGATCAATGAT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTCGATCAATGAT
* *
51713235 TCGGGGAATTTGCACTTGGCAACCCCTTTTCGATCAATGAT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTCGATCAATGAT
* * * *
51713276 TTGGGTAATCTGCACTTAGTAACACCTT
1 TCGGGGAATCTGCACTTAGCAACCCCTT
51713304 ACATTCAATG
Statistics
Matches: 98, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 98 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.32
Consensus pattern (41 bp):
TCGGGGAATCTGCACTTAGCAACCCCTTTTCGATCAATGAT
Found at i:51713212 original size:67 final size:68
Alignment explanation
Indices: 51713089--51713217 Score: 170
Period size: 67 Copynumber: 1.9 Consensus size: 68
51713079 AGGATACGGT
**
51713089 GGAATCAGCACTTAGCAACCACCTTTAGAATAAATAATTTTGGGAATCAGCACTTAGCAACCGCT
1 GGAATCAGCACTTAGCAACCACCTTTAGAATAAATAATTCGGGGAATCAGCACTTAGCAACCGCT
51713154 CGG
66 CGG
*** * * * *
51713157 GGAATCAGCACTTAGCAACC-CCTTTTTTATCAGTGATTCGGGGAATCTGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACCACCTTTAGAATAAATAATTCGGGGAATCAGCACTTAGCAACC
51713218 CCTTTTCGAT
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
67 32 0.62
68 20 0.38
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (68 bp):
GGAATCAGCACTTAGCAACCACCTTTAGAATAAATAATTCGGGGAATCAGCACTTAGCAACCGCT
CGG
Found at i:51719452 original size:9 final size:9
Alignment explanation
Indices: 51719435--51719471 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
51719425 TATAGTTTGA
51719435 TATTCGAAT
1 TATTCGAAT
*
51719444 TATTTGAAT
1 TATTCGAAT
*
51719453 TATTCGAGT
1 TATTCGAAT
51719462 TATTCGAAT
1 TATTCGAAT
51719471 T
1 T
51719472 CAAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:51721154 original size:15 final size:13
Alignment explanation
Indices: 51721136--51721169 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 13
51721126 TCTTCTTCTC
51721136 CTTTTTCTTTTGGTT
1 CTTTTTCTTTT--TT
51721151 CTTTTTCTTTTTT
1 CTTTTTCTTTTTT
51721164 CTTTTT
1 CTTTTT
51721170 AATAACTCCG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.42
15 11 0.58
ACGTcount: A:0.00, C:0.15, G:0.06, T:0.79
Consensus pattern (13 bp):
CTTTTTCTTTTTT
Found at i:51724139 original size:21 final size:20
Alignment explanation
Indices: 51724119--51724169 Score: 52
Period size: 23 Copynumber: 2.5 Consensus size: 20
51724109 CCTCCATTCT
51724119 TTCTTTTTTATTATT-TTTTC
1 TTCTTTTTTATT-TTATTTTC
51724139 TCTCATTCTTTTATTTTATTTTC
1 T-TC-TT-TTTTATTTTATTTTC
51724162 -TCTTTTTT
1 TTCTTTTTT
51724170 CTTTCCCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
19 4 0.15
20 3 0.11
21 4 0.15
22 4 0.15
23 12 0.44
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (20 bp):
TTCTTTTTTATTTTATTTTC
Found at i:51724897 original size:62 final size:61
Alignment explanation
Indices: 51724743--51724907 Score: 186
Period size: 62 Copynumber: 2.7 Consensus size: 61
51724733 CTGAATTTGA
* * * *
51724743 GGCACACGGGCTAGGGACACGGGCGTGTGTCTAGGTCATGTAACTCACTGTTTGTATTTCT
1 GGCACACAGGCTAGGGACACAGGCGTGTGTCTAGGCCGTGTAACTCACTGTTTGTATTTCT
* * ** * * *
51724804 GGCAACACAAGCCAGGGACACCCGCGTGTGTCCAGGCCGTGTAACTTATTGTTTGTATTTCT
1 GGC-ACACAGGCTAGGGACACAGGCGTGTGTCTAGGCCGTGTAACTCACTGTTTGTATTTCT
* * *
51724866 GGTCACACAGGCTAGGGACATAGGTGCGTGTCTAGGCCGTGT
1 GG-CACACAGGCTAGGGACACAGGCGTGTGTCTAGGCCGTGT
51724908 GAGGGTATTG
Statistics
Matches: 84, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
61 3 0.04
62 80 0.95
63 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.27
Consensus pattern (61 bp):
GGCACACAGGCTAGGGACACAGGCGTGTGTCTAGGCCGTGTAACTCACTGTTTGTATTTCT
Found at i:51729532 original size:23 final size:23
Alignment explanation
Indices: 51729481--51729525 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
51729471 ACCAAAATAA
51729481 TAAATTATTGCAACGGTAGTGAC
1 TAAATTATTGCAACGGTAGTGAC
*
51729504 TAAATTATT-CTAACGGTTGTGA
1 TAAATTATTGC-AACGGTAGTGA
51729526 TCAAATTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.36
Consensus pattern (23 bp):
TAAATTATTGCAACGGTAGTGAC
Found at i:51729726 original size:5 final size:5
Alignment explanation
Indices: 51729716--51729741 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
51729706 TATCAGCGAT
51729716 GTTCA GTTCA GTTCA GTTCA GTTCA G
1 GTTCA GTTCA GTTCA GTTCA GTTCA G
51729742 CCCTTTTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.38
Consensus pattern (5 bp):
GTTCA
Found at i:51735197 original size:9 final size:9
Alignment explanation
Indices: 51735145--51735226 Score: 58
Period size: 9 Copynumber: 8.8 Consensus size: 9
51735135 ACTATTTATG
*
51735145 TATGTATAT
1 TATGTATTT
* *
51735154 TAGGTATGT
1 TATGTATTT
* *
51735163 TATGTAGTA
1 TATGTATTT
51735172 TAT-TATTGT
1 TATGTATT-T
51735181 TAATGTATTT
1 T-ATGTATTT
*
51735191 TATGTATGT
1 TATGTATTT
51735200 TATGTAGTGTT
1 TATGTA-T-TT
*
51735211 TATGTATGT
1 TATGTATTT
51735220 TATGTAT
1 TATGTAT
51735227 ATTACCATTT
Statistics
Matches: 57, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
8 3 0.05
9 37 0.65
10 6 0.11
11 11 0.19
ACGTcount: A:0.26, C:0.00, G:0.20, T:0.55
Consensus pattern (9 bp):
TATGTATTT
Found at i:51735214 original size:20 final size:19
Alignment explanation
Indices: 51735117--51735226 Score: 95
Period size: 20 Copynumber: 5.8 Consensus size: 19
51735107 AATGTATATC
*
51735117 ATGTATGTTATGTATATTACT
1 ATGTATGTTATGTATGTT--T
* *
51735138 ATTTATG-TATGTAT-ATT
1 ATGTATGTTATGTATGTTT
* *
51735155 AGGTATGTTATGTA-GTAT
1 ATGTATGTTATGTATGTTT
51735173 AT-TATTGTTAATGTAT-TTT
1 ATGTA-TGTT-ATGTATGTTT
51735192 ATGTATGTTATGTAGTGTTT
1 ATGTATGTTATGTA-TGTTT
51735212 ATGTATGTTATGTAT
1 ATGTATGTTATGTAT
51735227 ATTACCATTT
Statistics
Matches: 73, Mismatches: 8, Indels: 18
0.74 0.08 0.18
Matches are distributed among these distances:
17 8 0.11
18 17 0.23
19 16 0.22
20 26 0.36
21 6 0.08
ACGTcount: A:0.26, C:0.01, G:0.18, T:0.55
Consensus pattern (19 bp):
ATGTATGTTATGTATGTTT
Found at i:51735244 original size:50 final size:46
Alignment explanation
Indices: 51735117--51735249 Score: 128
Period size: 46 Copynumber: 2.8 Consensus size: 46
51735107 AATGTATATC
* *
51735117 ATGTATGTTATGTATATTACTATTTATGTATGTATATTAGGTATGTT
1 ATGTATGTTATGTATATTAC-ATTTATTTATGTATGTTAGGTATGTT
* * *
51735164 ATGTA-GTATAT-TATTGTTA-ATGTATTTTATGTATGTTATGTAGTGTTT
1 ATGTATGT-TATGTA-TATTACATTTA-TTTATGTATGTTAGGTA-TG-TT
51735212 ATGTATGTTATGTATATTACCATTTATATTATGTATGT
1 ATGTATGTTATGTATATTA-CATTTAT-TTATGTATGT
51735250 GCAGTGTTCT
Statistics
Matches: 69, Mismatches: 7, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
45 4 0.06
46 18 0.26
47 14 0.20
48 14 0.20
49 5 0.07
50 14 0.20
ACGTcount: A:0.27, C:0.02, G:0.17, T:0.54
Consensus pattern (46 bp):
ATGTATGTTATGTATATTACATTTATTTATGTATGTTAGGTATGTT
Found at i:51735685 original size:18 final size:18
Alignment explanation
Indices: 51735649--51735686 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
51735639 GGGGAACCAC
*
51735649 ATTGTAATGAAGAATTTA
1 ATTGTAATGAAGAAGTTA
51735667 ATTGTAATG-AGAGAGTTA
1 ATTGTAATGAAGA-AGTTA
51735685 AT
1 AT
51735687 AGTAGGGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (18 bp):
ATTGTAATGAAGAAGTTA
Found at i:51739724 original size:5 final size:5
Alignment explanation
Indices: 51739714--51739742 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
51739704 GATGATAAAT
51739714 AATAA AATAA AATAA AATAA AATAA AATA
1 AATAA AATAA AATAA AATAA AATAA AATA
51739743 TCATCATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:51740703 original size:25 final size:25
Alignment explanation
Indices: 51740675--51740763 Score: 96
Period size: 25 Copynumber: 3.7 Consensus size: 25
51740665 TGGCTCGTAT
*
51740675 GAGCTTCCTGATAATTGGCTCTCCG
1 GAGCTTCCCGATAATTGGCTCTCCG
**
51740700 GAGCTTCCCGATAATTGGCTCTCAT
1 GAGCTTCCCGATAATTGGCTCTCCG
* * *
51740725 GAGCTT--C-TTGATTAGCTCTCCG
1 GAGCTTCCCGATAATTGGCTCTCCG
51740747 GAGCTTCCCGAT-ATTGG
1 GAGCTTCCCGATAATTGG
51740764 ATCATATGAG
Statistics
Matches: 51, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
22 16 0.31
23 1 0.02
24 5 0.10
25 29 0.57
ACGTcount: A:0.17, C:0.27, G:0.24, T:0.33
Consensus pattern (25 bp):
GAGCTTCCCGATAATTGGCTCTCCG
Found at i:51740753 original size:47 final size:46
Alignment explanation
Indices: 51740692--51740784 Score: 136
Period size: 47 Copynumber: 2.0 Consensus size: 46
51740682 CTGATAATTG
*
51740692 GCTCTCCGGAGCTTCCCGATAATTGGCTC-TCATGAGC-TTCTTGATTA
1 GCTCTCCGGAGCTTCCCGAT-ATTGGATCAT-ATGAGCTTTC-TGATTA
51740739 GCTCTCCGGAGCTTCCCGATATTGGATCATATGAGCTTTCTGATTA
1 GCTCTCCGGAGCTTCCCGATATTGGATCATATGAGCTTTCTGATTA
51740785 TGGTTCTTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
46 19 0.44
47 24 0.56
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (46 bp):
GCTCTCCGGAGCTTCCCGATATTGGATCATATGAGCTTTCTGATTA
Found at i:51740783 original size:46 final size:47
Alignment explanation
Indices: 51740692--51740784 Score: 138
Period size: 46 Copynumber: 2.0 Consensus size: 47
51740682 CTGATAATTG
*
51740692 GCTCTCCGGAGCTTCCCGATAATTGGCTCTCATGAGCTTCTTGATTA
1 GCTCTCCGGAGCTTCCCGATAATTGGATCTCATGAGCTTCTTGATTA
51740739 GCTCTCCGGAGCTTCCCGAT-ATTGGATCAT-ATGAGCTT-TCTGATTA
1 GCTCTCCGGAGCTTCCCGATAATTGGATC-TCATGAGCTTCT-TGATTA
51740785 TGGTTCTTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
45 1 0.02
46 21 0.49
47 21 0.49
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (47 bp):
GCTCTCCGGAGCTTCCCGATAATTGGATCTCATGAGCTTCTTGATTA
Found at i:51744394 original size:21 final size:21
Alignment explanation
Indices: 51744370--51744409 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
51744360 GAGAAAAATG
* *
51744370 AAAGAGATAGCAGCGAAAACA
1 AAAGAGATAGAAGAGAAAACA
51744391 AAAGAGATAGAAGAGAAAA
1 AAAGAGATAGAAGAGAAAA
51744410 AGGTTGAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.07, G:0.25, T:0.05
Consensus pattern (21 bp):
AAAGAGATAGAAGAGAAAACA
Found at i:51744872 original size:29 final size:29
Alignment explanation
Indices: 51744840--51744897 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
51744830 ACCAATAAAA
*
51744840 GCCCTTTTTTTCAA-AATTTACCGAAATGG
1 GCCCATTTTTT-AATAATTTACCGAAATGG
* *
51744869 GCCCATTTTTTAATTATTTACCGGAATGG
1 GCCCATTTTTTAATAATTTACCGAAATGG
51744898 TCATTTTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 2 0.08
29 23 0.92
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.40
Consensus pattern (29 bp):
GCCCATTTTTTAATAATTTACCGAAATGG
Found at i:51745154 original size:22 final size:23
Alignment explanation
Indices: 51745104--51745184 Score: 89
Period size: 22 Copynumber: 3.6 Consensus size: 23
51745094 TTTTCACGAA
51745104 CAAA-TCCTCTCTAATATTCCTTCT
1 CAAATTCCTCTC-AAT-TTCCTTCT
*
51745128 C-AATTCCTCTCAATTTCTTTC-
1 CAAATTCCTCTCAATTTCCTTCT
*
51745149 CAAATTTCTCTCAATTTCCTTCT
1 CAAATTCCTCTCAATTTCCTTCT
*
51745172 AAAATT-CTCTCAA
1 CAAATTCCTCTCAA
51745185 ACTCATATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
21 1 0.02
22 31 0.62
23 10 0.20
24 8 0.16
ACGTcount: A:0.26, C:0.31, G:0.00, T:0.43
Consensus pattern (23 bp):
CAAATTCCTCTCAATTTCCTTCT
Found at i:51745214 original size:40 final size:41
Alignment explanation
Indices: 51745157--51745257 Score: 125
Period size: 40 Copynumber: 2.5 Consensus size: 41
51745147 TCCAAATTTC
* *
51745157 TCTCAATTTCCTTCTAAAATTCTCTCAAA-CTCATATTTCAT
1 TCTCAATTTCCTTCTAAAATTATCTCAAATC-CATATTTAAT
*
51745198 T-TCAATTTCCTTCTAAAATTATTTCAAATCCATATTTAAT
1 TCTCAATTTCCTTCTAAAATTATCTCAAATCCATATTTAAT
* *
51745238 TCTAAATTTCCGTTTTAAAA
1 TCTCAATTTCC-TTCTAAAA
51745258 ATAATTTTAA
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
40 35 0.67
41 10 0.19
42 7 0.13
ACGTcount: A:0.33, C:0.21, G:0.01, T:0.46
Consensus pattern (41 bp):
TCTCAATTTCCTTCTAAAATTATCTCAAATCCATATTTAAT
Found at i:51747080 original size:18 final size:19
Alignment explanation
Indices: 51747054--51747093 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
51747044 AGGTGCGTTT
*
51747054 CCTAGCCCTTATATGTA-C
1 CCTAACCCTTATATGTATC
51747072 CCTAACCCTTATATGTATC
1 CCTAACCCTTATATGTATC
51747091 CCT
1 CCT
51747094 TTTCGAGTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.23, C:0.35, G:0.07, T:0.35
Consensus pattern (19 bp):
CCTAACCCTTATATGTATC
Found at i:51747510 original size:25 final size:25
Alignment explanation
Indices: 51747481--51747763 Score: 297
Period size: 25 Copynumber: 11.7 Consensus size: 25
51747471 TATTTAAATA
* *
51747481 TTATTTGATGCAATAAAATTGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
51747506 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
* * *
51747531 TTATTTAATGTAATAAAATATAAAT
1 TTATTTGATGTAATAAAATAGAAGT
** *
51747556 TT-TTTCGA-GT--T-ATTTTG-A-T
1 TTATTT-GATGTAATAAAATAGAAGT
51747575 ATTATTTGATGTAATAAAATAGAAGT
1 -TTATTTGATGTAATAAAATAGAAGT
*
51747601 TTATTTGATGTAATAAAATAGAAAT
1 TTATTTGATGTAATAAAATAGAAGT
*
51747626 TTATTTGATGTAATAAAATATAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
51747651 TTATTGGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
51747676 TTATTTGATGTAATAAAATAGAAAT
1 TTATTTGATGTAATAAAATAGAAGT
** *
51747701 TT-TTTCGA-GT--T-ATTTTG-A-T
1 TTATTT-GATGTAATAAAATAGAAGT
51747720 ATTATTTGATGTAATAAAATAGAAGT
1 -TTATTTGATGTAATAAAATAGAAGT
51747746 TTATTTGATGTAATAAAA
1 TTATTTGATGTAATAAAA
51747764 ACTCTAACCT
Statistics
Matches: 214, Mismatches: 26, Indels: 36
0.78 0.09 0.13
Matches are distributed among these distances:
19 2 0.01
20 10 0.05
21 15 0.07
22 2 0.01
23 2 0.01
24 16 0.07
25 165 0.77
26 2 0.01
ACGTcount: A:0.42, C:0.01, G:0.14, T:0.43
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:51747589 original size:70 final size:70
Alignment explanation
Indices: 51747506--51747763 Score: 385
Period size: 70 Copynumber: 3.6 Consensus size: 70
51747496 AAATTGAAGT
* *
51747506 TTATTTGATGTAATAAAATAGAAGTTTATTTAATGTAATAAAATATAAATTTTTTCGAGTTATTT
1 TTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAATTTTTTCGAGTTATTT
51747571 TGATA
66 TGATA
51747576 TTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAATTTATTT-GATGTAAT
1 TTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAATTT-TTTCGA-GT--T
***
51747640 AAAAT-ATAA
62 ATTTTGAT-A
*
51747649 GTTTATTGGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAATTTTTTCGAGTTAT
1 --TTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAATTTTTTCGAGTTAT
51747714 TTTGATA
64 TTTGATA
51747721 TTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAA
1 TTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAA
51747764 ACTCTAACCT
Statistics
Matches: 169, Mismatches: 10, Indels: 18
0.86 0.05 0.09
Matches are distributed among these distances:
70 94 0.56
71 5 0.03
72 6 0.04
73 6 0.04
74 5 0.03
75 53 0.31
ACGTcount: A:0.42, C:0.01, G:0.14, T:0.44
Consensus pattern (70 bp):
TTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAATTTTTTCGAGTTATTT
TGATA
Found at i:51747744 original size:145 final size:146
Alignment explanation
Indices: 51747476--51747763 Score: 517
Period size: 145 Copynumber: 2.0 Consensus size: 146
51747466 TGCCGTATTT
*
51747476 AAATATTATTTGATGCAATAAAATTGAAGTTTATTTGATGTAATAAAATAGAAGTTTATTTAATG
1 AAATATTATTTGATGCAATAAAATTGAAGTTTATTGGATGTAATAAAATAGAAGTTTATTTAATG
*
51747541 TAATAAAATATAAATTTTTTCGAGTTATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATT
66 TAATAAAATAGAAATTTTTTCGAGTTATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATT
51747606 TGATGTAATAAAATAG
131 TGATGTAATAAAATAG
* *
51747622 AAAT-TTATTTGATGTAATAAAATAT-AAGTTTATTGGATGTAATAAAATAGAAGTTTATTTGAT
1 AAATATTATTTGATGCAATAAAAT-TGAAGTTTATTGGATGTAATAAAATAGAAGTTTATTTAAT
51747685 GTAATAAAATAGAAATTTTTTCGAGTTATTTTGATATTATTTGATGTAATAAAATAGAAGTTTAT
65 GTAATAAAATAGAAATTTTTTCGAGTTATTTTGATATTATTTGATGTAATAAAATAGAAGTTTAT
51747750 TTGATGTAATAAAA
130 TTGATGTAATAAAA
51747764 ACTCTAACCT
Statistics
Matches: 137, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
145 132 0.96
146 5 0.04
ACGTcount: A:0.42, C:0.01, G:0.14, T:0.43
Consensus pattern (146 bp):
AAATATTATTTGATGCAATAAAATTGAAGTTTATTGGATGTAATAAAATAGAAGTTTATTTAATG
TAATAAAATAGAAATTTTTTCGAGTTATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATT
TGATGTAATAAAATAG
Found at i:51747789 original size:13 final size:13
Alignment explanation
Indices: 51747771--51747814 Score: 70
Period size: 13 Copynumber: 3.4 Consensus size: 13
51747761 AAAACTCTAA
51747771 CCTAATTAAATAC
1 CCTAATTAAATAC
51747784 CCTAATTAAATAC
1 CCTAATTAAATAC
* *
51747797 CATAATTAAAAAC
1 CCTAATTAAATAC
51747810 CCTAA
1 CCTAA
51747815 CCCTAATCCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (13 bp):
CCTAATTAAATAC
Found at i:51747875 original size:13 final size:13
Alignment explanation
Indices: 51747840--51747945 Score: 69
Period size: 13 Copynumber: 8.5 Consensus size: 13
51747830 TAACCTAAAT
*
51747840 TAATTCAAAACCT
1 TAATTCAAAACCC
*
51747853 TAATCCAAAACCC
1 TAATTCAAAACCC
*
51747866 TAATTAAAAACCC
1 TAATTCAAAACCC
* **
51747879 TAA-CCCTAACCC
1 TAATTCAAAACCC
* * *
51747891 TAA-CCTAAA--T
1 TAATTCAAAACCC
*
51747901 TAATTCAAAAACC
1 TAATTCAAAACCC
51747914 TAATT-AAATACCC
1 TAATTCAAA-ACCC
*
51747927 TAATTAAAAACCC
1 TAATTCAAAACCC
51747940 TAATTC
1 TAATTC
51747946 TAGCCTAATT
Statistics
Matches: 72, Mismatches: 16, Indels: 10
0.73 0.16 0.10
Matches are distributed among these distances:
10 3 0.04
11 4 0.06
12 15 0.21
13 47 0.65
14 3 0.04
ACGTcount: A:0.47, C:0.27, G:0.00, T:0.25
Consensus pattern (13 bp):
TAATTCAAAACCC
Found at i:51747887 original size:61 final size:61
Alignment explanation
Indices: 51747813--51747942 Score: 210
Period size: 61 Copynumber: 2.1 Consensus size: 61
51747803 TAAAAACCCT
*
51747813 AACCCTAATCCTAACCCTAACCTAAATTAATTC-AAAACCTTAATCCAAA-ACCCTAATTAAA
1 AACCCTAACCCTAACCCTAACCTAAATTAATTCAAAAACC-TAAT-CAAATACCCTAATTAAA
*
51747874 AACCCTAACCCTAACCCTAACCTAAATTAATTCAAAAACCTAATTAAATACCCTAATTAAA
1 AACCCTAACCCTAACCCTAACCTAAATTAATTCAAAAACCTAATCAAATACCCTAATTAAA
51747935 AACCCTAA
1 AACCCTAA
51747943 TTCTAGCCTA
Statistics
Matches: 65, Mismatches: 2, Indels: 4
0.92 0.03 0.06
Matches are distributed among these distances:
60 3 0.05
61 56 0.86
62 6 0.09
ACGTcount: A:0.47, C:0.29, G:0.00, T:0.24
Consensus pattern (61 bp):
AACCCTAACCCTAACCCTAACCTAAATTAATTCAAAAACCTAATCAAATACCCTAATTAAA
Found at i:51747939 original size:55 final size:58
Alignment explanation
Indices: 51747822--51747967 Score: 160
Period size: 61 Copynumber: 2.5 Consensus size: 58
51747812 TAACCCTAAT
51747822 CCTAACCCTAACCTAAATTAATTC-AAAACCTTAATCCAAAACCCTAATTAAAAACCCTAAC
1 CCTAACCCTAACCTAAATTAATTCAAAAACCTTAATCCAAAACCCTAATT-AAAA--C-AAC
*
51747883 CCTAACCCTAACCTAAATTAATTCAAAAACC-TAAT-TAAATACCCTAATT-AAA-AAC
1 CCTAACCCTAACCTAAATTAATTCAAAAACCTTAATCCAAA-ACCCTAATTAAAACAAC
** * *
51747938 CCTAATTCTAGCCTAATTTAATT-AAAAACC
1 CCTAACCCTAACCTAAATTAATTCAAAAACC
51747968 CTAAAAACCC
Statistics
Matches: 78, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
54 7 0.09
55 22 0.28
59 3 0.04
60 3 0.04
61 37 0.47
62 6 0.08
ACGTcount: A:0.46, C:0.27, G:0.01, T:0.26
Consensus pattern (58 bp):
CCTAACCCTAACCTAAATTAATTCAAAAACCTTAATCCAAAACCCTAATTAAAACAAC
Found at i:51747998 original size:24 final size:23
Alignment explanation
Indices: 51747969--51748221 Score: 128
Period size: 24 Copynumber: 9.5 Consensus size: 23
51747959 TTAAAAACCC
51747969 TAAAAACCCTAATCCTAATTTAAT
1 TAAAAACCCTAA-CCTAATTTAAT
*
51747993 TAAAAACCCTAACCTAAACCCTATTAAA
1 TAAAAACCCTAACCT-AA---T-TTAAT
**
51748021 TACTCTAACCCTAACCTAATTTAAT
1 TA--AAAACCCTAACCTAATTTAAT
51748046 TAAAAACCCTAAAAACCCTAATCCTAATTTAAT
1 TAAAAACCCT---AA-CC------TAATTTAAT
**
51748079 TAAAAACCCTAACCTAAACCCTAAT
1 TAAAAACCCTAACCT-AA-TTTAAT
51748104 TAAATACCTTAACCCTAACCTAATTTAAT
1 T-AA-A----AACCCTAACCTAATTTAAT
51748133 TAAAAACCCTAATCCTAATTTAAT
1 TAAAAACCCTAA-CCTAATTTAAT
*
51748157 TAAAAACCCTAACCTAAACCCTATTAAA
1 TAAAAACCCTAACCT-AA---T-TTAAT
**
51748185 TACTCTAACCCTAACCTAATTTAAT
1 TA--AAAACCCTAACCTAATTTAAT
51748210 TAAAAACCCTAA
1 TAAAAACCCTAA
51748222 AAACCCTAAT
Statistics
Matches: 180, Mismatches: 16, Indels: 67
0.68 0.06 0.25
Matches are distributed among these distances:
23 29 0.16
24 41 0.23
25 17 0.09
26 6 0.03
27 6 0.03
28 14 0.08
29 11 0.06
30 26 0.14
31 11 0.06
33 19 0.11
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.28
Consensus pattern (23 bp):
TAAAAACCCTAACCTAATTTAAT
Found at i:51748049 original size:86 final size:87
Alignment explanation
Indices: 51747866--51748566 Score: 1003
Period size: 86 Copynumber: 8.2 Consensus size: 87
51747856 TCCAAAACCC
* * *
51747866 TAATTAAAAACCCTAACCCTAACCCTAA-CCTAAATTAATTCAAAAA-CCTAA-TTAAATACCCT
1 TAATTAAAAACCCTAA---AAACCCTAATCCTAATTTAATT-AAAAACCCTAACCT-AA-ACCCT
* * ** *
51747928 AATTAAAAACCCTAATTCTAGCCTAATT
60 AATTAAATACTCTAACCCTAACCTAATT
51747956 TAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCT-ATTAA
1 TAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAA
51748020 ATACTCTAACCCTAACCTAATT
66 ATACTCTAACCCTAACCTAATT
51748042 TAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAA
1 TAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAA
51748107 ATAC-CTTAACCCTAACCTAATT
66 ATACTC-TAACCCTAACCTAATT
51748129 TAA-T--------TAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCT-ATTAA
1 TAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAA
51748184 ATACTCTAACCCTAACCTAATT
66 ATACTCTAACCCTAACCTAATT
51748206 TAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCT-ATTAA
1 TAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAA
51748270 ATACTCTAACCCTAACCTAATT
66 ATACTCTAACCCTAACCTAATT
*
51748292 TAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCTTAATTAA
1 TAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAA
* *
51748357 ATACCCTAACCCT-ATCTAATT
66 ATACTCTAACCCTAACCTAATT
*
51748378 TAATTAAAAACCCTAAAAACCTTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAA
1 TAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAA
*
51748443 ATACCCTAACCCTAACCTAATT
66 ATACTCTAACCCTAACCTAATT
* *
51748465 TAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAGACCCTAACCCT-AA-CCTAATTT
1 TAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAA-CCTAAACCCTAATTA
* * *
51748528 AAT--TCAAAACCTTAACCTAAAT
65 AATACTC-TAACCCTAACCTAATT
*
51748550 TATTTAAAAACCCTAAA
1 TAATTAAAAACCCTAAA
51748567 CTAAGTTAAC
Statistics
Matches: 570, Mismatches: 22, Indels: 43
0.90 0.03 0.07
Matches are distributed among these distances:
77 28 0.05
78 48 0.08
84 1 0.00
85 29 0.05
86 307 0.54
87 119 0.21
88 21 0.04
89 1 0.00
90 16 0.03
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.28
Consensus pattern (87 bp):
TAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAA
ATACTCTAACCCTAACCTAATT
Found at i:51748077 original size:33 final size:32
Alignment explanation
Indices: 51748027--51748090 Score: 119
Period size: 33 Copynumber: 2.0 Consensus size: 32
51748017 TAAATACTCT
51748027 AACCCTAACCTAATTTAATTAAAAACCCTAAA
1 AACCCTAACCTAATTTAATTAAAAACCCTAAA
51748059 AACCCTAATCCTAATTTAATTAAAAACCCTAA
1 AACCCTAA-CCTAATTTAATTAAAAACCCTAA
51748091 CCTAAACCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.26
33 23 0.74
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.27
Consensus pattern (32 bp):
AACCCTAACCTAATTTAATTAAAAACCCTAAA
Found at i:51748228 original size:250 final size:250
Alignment explanation
Indices: 51747886--51748566 Score: 1018
Period size: 250 Copynumber: 2.7 Consensus size: 250
51747876 CCCTAACCCT
* * * **
51747886 AACCCTAA-CCTAAATTAATTCAAAAA-CCTAA-TTAAATACCCTAATTAAAAACCCTAATTCTA
1 AACCCTAATCCTAATTTAATT-AAAAACCCTAACCT-AA-ACCCTAATTAAATACCCTAACCCTA
*
51747948 GCCTAATTTAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACC
63 ACCTAATTTAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACC
51748013 CTATTAAATACTCTAACCCTAACCTAATTTAATTAAAAACCCTAAAAACCCTAATCCTAATTTAA
128 CTATTAAATACTCTAACCCTAACCTAATTTAATTAAAAACCCTAAAAACCCTAATCCTAATTTAA
*
51748078 TTAAAAACCCTAACCTAAACCCTAATTAAATACCTTAACCCTAACCTAATTTAATTAAA
193 TTAAAAACCCTAACCTAAACCCTAATTAAATACCCTAACCCT-ACCTAATTTAATTAAA
*
51748137 AACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCT-ATTAAATACTCTAACCCTAACC
1 AACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAAATACCCTAACCCTAACC
51748201 TAATTTAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTA
66 TAATTTAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTA
51748266 TTAAATACTCTAACCCTAACCTAATTTAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTA
131 TTAAATACTCTAACCCTAACCTAATTTAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTA
* *
51748331 AAAACCCTAACCTAAACCTTAATTAAATACCCTAACCCTATCTAATTTAATTAAA
196 AAAACCCTAACCTAAACCCTAATTAAATACCCTAACCCTACCTAATTTAATTAAA
51748386 AACCCTAAAAACCTTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAAATACCCTA
1 AA--C------CC-TAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAAATACCCTA
*
51748451 ACCCTAACCTAATTTAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAGACCCTAACC
57 ACCCTAACCTAATTTAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAA-C
* * * * *
51748516 CT-AA-CCTAATTTAAT--TCAAAACCTTAACCTAAATTATTTAAAAACCCTAAA
121 CTAAACCCT-ATTAAATACTC-TAACCCTAACCTAATTTAATTAAAAACCCTAAA
51748567 CTAAGTTAAC
Statistics
Matches: 397, Mismatches: 17, Indels: 25
0.90 0.04 0.06
Matches are distributed among these distances:
249 17 0.04
250 184 0.46
251 19 0.05
252 18 0.05
253 1 0.00
257 4 0.01
258 69 0.17
259 82 0.21
260 3 0.01
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.28
Consensus pattern (250 bp):
AACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAAATACCCTAACCCTAACC
TAATTTAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTA
TTAAATACTCTAACCCTAACCTAATTTAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTA
AAAACCCTAACCTAAACCCTAATTAAATACCCTAACCCTACCTAATTTAATTAAA
Found at i:51748248 original size:24 final size:23
Alignment explanation
Indices: 51748219--51748393 Score: 80
Period size: 25 Copynumber: 6.5 Consensus size: 23
51748209 TTAAAAACCC
51748219 TAAAAACCCTAATCCTAATTTAAT
1 TAAAAACCCTAA-CCTAATTTAAT
*
51748243 TAAAAACCCTAACCTAAACCCTATTAAA
1 TAAAAACCCTAACCT-AA---T-TTAAT
**
51748271 TACTCTAACCCTAACCTAATTTAAT
1 TA--AAAACCCTAACCTAATTTAAT
51748296 TAAAAACCCTAAAAACCCTAATCCTAATTTAAT
1 TAAAAACCCT---AA-CC------TAATTTAAT
*
51748329 TAAAAACCCTAACCTAAACCTTAAT
1 TAAAAACCCTAACCT-AA-TTTAAT
*
51748354 TAAATACCCTAACCCTATCTAATTTAAT
1 TAAAAACCCTAA--C---CTAATTTAAT
51748382 TAAAAACCCTAA
1 TAAAAACCCTAA
51748394 AAACCTTAAT
Statistics
Matches: 117, Mismatches: 10, Indels: 44
0.68 0.06 0.26
Matches are distributed among these distances:
23 10 0.09
24 16 0.14
25 22 0.19
26 3 0.03
27 4 0.03
28 22 0.19
29 6 0.05
30 15 0.13
33 19 0.16
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.29
Consensus pattern (23 bp):
TAAAAACCCTAACCTAATTTAAT
Found at i:51748345 original size:38 final size:32
Alignment explanation
Indices: 51748277--51748538 Score: 225
Period size: 33 Copynumber: 8.8 Consensus size: 32
51748267 TAAATACTCT
51748277 AACCCTAACCTAATTTAATTAAAAACCCTAAA
1 AACCCTAACCTAATTTAATTAAAAACCCTAAA
51748309 AACCCTAATCCTAATTTAATTAAAAACCCT---
1 AACCCTAA-CCTAATTTAATTAAAAACCCTAAA
*
51748339 AA-CCTAAACC----TTAATTAAATACCCTAA-
1 AACCCT-AACCTAATTTAATTAAAAACCCTAAA
*
51748366 --CCCT-ATCTAATTTAATTAAAAACCCTAAA
1 AACCCTAACCTAATTTAATTAAAAACCCTAAA
*
51748395 AACCTTAATCCTAATTTAATTAAAAACCCT---
1 AACCCTAA-CCTAATTTAATTAAAAACCCTAAA
* * *
51748425 AA-CCTAAACC----CTAATTAAATACCCTAAC
1 AACCCT-AACCTAATTTAATTAAAAACCCTAAA
51748453 ---CCTAACCTAATTTAATTAAAAACCCTAAA
1 AACCCTAACCTAATTTAATTAAAAACCCTAAA
*
51748482 AACCCTAATCCTAATTTAATTAAAGACCCT---
1 AACCCTAA-CCTAATTTAATTAAAAACCCTAAA
*
51748512 AACCCTAACCTAATTTAATTCAAAACC
1 AACCCTAACCTAATTTAATTAAAAACC
51748539 TTAACCTAAA
Statistics
Matches: 190, Mismatches: 14, Indels: 55
0.73 0.05 0.21
Matches are distributed among these distances:
24 2 0.01
25 31 0.16
26 6 0.03
28 16 0.08
29 41 0.22
30 16 0.08
31 3 0.02
32 14 0.07
33 61 0.32
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.28
Consensus pattern (32 bp):
AACCCTAACCTAATTTAATTAAAAACCCTAAA
Found at i:51748352 original size:25 final size:25
Alignment explanation
Indices: 51748305--51748565 Score: 127
Period size: 33 Copynumber: 9.5 Consensus size: 25
51748295 TTAAAAACCC
*
51748305 TAAAAACCCTAATCCT-AATTTAAT
1 TAAAAACCCTAACCCTAAATTTAAT
*
51748329 TAAAAACCCTAA-CCTAAACCTTAAT
1 TAAAAACCCTAACCCTAAA-TTTAAT
*
51748354 TAAATACCCTAACCCTATCTAATTTAAT
1 TAAAAACCCTAACCCTA---AATTTAAT
*
51748382 TAAAAACCCTAAAAACCTTAATCCTAATTTAAT
1 TAAAAACCCT---AACCCT-A----AATTTAAT
**
51748415 TAAAAACCCTAA-CCTAAACCCTAAT
1 TAAAAACCCTAACCCTAAA-TTTAAT
*
51748440 TAAATACCCTAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCCT-A---AATTTAAT
51748469 TAAAAACCCTAAAAACCCTAATCCTAATTTAAT
1 TAAAAACCCT---AACCCT-A----AATTTAAT
*
51748502 TAAAGACCCTAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCCT-A---AATTTAAT
* * *
51748531 TCAAAACCTTAA-CCTAAA-TTATT
1 TAAAAACCCTAACCCTAAATTTAAT
51748554 TAAAAACCCTAA
1 TAAAAACCCTAA
51748566 ACTAAGTTAA
Statistics
Matches: 196, Mismatches: 20, Indels: 43
0.76 0.08 0.17
Matches are distributed among these distances:
23 17 0.09
24 18 0.09
25 31 0.16
26 7 0.04
27 2 0.01
28 18 0.09
29 37 0.19
30 12 0.06
31 5 0.03
32 9 0.05
33 40 0.20
ACGTcount: A:0.46, C:0.25, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAAAACCCTAACCCTAAATTTAAT
Found at i:51748388 original size:336 final size:338
Alignment explanation
Indices: 51747866--51748480 Score: 1017
Period size: 336 Copynumber: 1.8 Consensus size: 338
51747856 TCCAAAACCC
* *
51747866 TAATTAAAAACCCTAACCCTAACCCTAACCTAAATTAATTCAAAAACCTAATTAAATACCCTAAT
1 TAATTAAAAACCCTAA--CAAACCCTAACCTAAATTAATTCAAAAACCTAACTAAATACCCTAAT
** *
51747931 TAAAAACCCTAATTCTAGCCTAATTTAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAA
64 TAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAA
*
51747996 AAACCCTAACCTAAACCCTATTAAATACTCTAACCCTAACCTAATTTAATTAAAAACCCTAAAAA
129 AAACCCTAACCTAAACCCTATTAAATACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAAAA
*
51748061 CCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAAATACCTTAACCCTAACCTA
194 CCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAAATACCCTAACCCTAACCTA
51748126 ATTTAATTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTATTAAATACTCT
259 ATTTAATTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTATTAAATACTCT
51748191 AACCCTAACCTAATT
324 AACCCTAACCTAATT
*
51748206 TAATTAAAAACCCTAA-AAACCCTAATCCTAATTTAATT-AAAAACCCTAACCT-AA-ACCCT-A
1 TAATTAAAAACCCTAACAAACCCTAA-CCTAAATTAATTCAAAAA-CCTAA-CTAAATACCCTAA
* *
51748266 TTAAATACTCTAACCCTAACCTAATTTAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTA
63 TTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTA
* *
51748331 AAAACCCTAACCTAAACCTTAATTAAATACCCTAACCCT-ATCTAATTTAATTAAAAACCCTAAA
128 AAAACCCTAACCTAAACCCT-ATTAAATACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAA
*
51748395 AACCTTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAAATACCCTAACCCTAACC
192 AACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAAATACCCTAACCCTAACC
51748460 TAATTTAATTAAAAACCCTAA
257 TAATTTAATTAAAAACCCTAA
51748481 AAACCCTAAT
Statistics
Matches: 258, Mismatches: 13, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
336 188 0.73
337 35 0.14
338 18 0.07
339 1 0.00
340 16 0.06
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.28
Consensus pattern (338 bp):
TAATTAAAAACCCTAACAAACCCTAACCTAAATTAATTCAAAAACCTAACTAAATACCCTAATTA
AAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAAAACCCTAATCCTAATTTAATTAAAA
ACCCTAACCTAAACCCTATTAAATACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAAAACC
CTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTAATTAAATACCCTAACCCTAACCTAAT
TTAATTAAAAACCCTAATCCTAATTTAATTAAAAACCCTAACCTAAACCCTATTAAATACTCTAA
CCCTAACCTAATT
Found at i:51748525 original size:24 final size:24
Alignment explanation
Indices: 51748478--51748526 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
51748468 TTAAAAACCC
* **
51748478 TAAAAACCCTAATCCTAATTTAAT
1 TAAAAACCCTAACCCTAACCTAAT
*
51748502 TAAAGACCCTAACCCTAACCTAAT
1 TAAAAACCCTAACCCTAACCTAAT
51748526 T
1 T
51748527 TAATTCAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.43, C:0.27, G:0.02, T:0.29
Consensus pattern (24 bp):
TAAAAACCCTAACCCTAACCTAAT
Found at i:51748543 original size:23 final size:23
Alignment explanation
Indices: 51748512--51748575 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 23
51748502 TAAAGACCCT
* *
51748512 AACCCTAACCTAATTTAATTCAA
1 AACCCTAACCTAAATTAATTAAA
* *
51748535 AACCTTAACCTAAATTATTTAAA
1 AACCCTAACCTAAATTAATTAAA
* *
51748558 AACCCTAAACTAAGTTAA
1 AACCCTAACCTAAATTAA
51748576 CAATGTTACA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.47, C:0.22, G:0.02, T:0.30
Consensus pattern (23 bp):
AACCCTAACCTAAATTAATTAAA
Found at i:51748728 original size:116 final size:116
Alignment explanation
Indices: 51748572--51748796 Score: 337
Period size: 116 Copynumber: 1.9 Consensus size: 116
51748562 CTAAACTAAG
**
51748572 TTAACAATGTTACATTCATGTAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAA
1 TTAACAATGTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAA
* *
51748637 T-AATTT-TACATAATTTGATAGTTTTACTAACCATTAACACAATTTGTTGAC
66 TAAATTTATAC-T-ATTTGATAATTTTACTAACAATTAACACAATTTGTTGAC
* * *
51748688 TTAATAATTTTACATTCACATAATGTTAGATTTGGTAAAATGTTTTGACTGGTACTAACAATTAA
1 TTAACAATGTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAA
* *
51748753 TAAATTTATACTATTTGATAATTTTAGTAACAATTAATACAATT
66 TAAATTTATACTATTTGATAATTTTACTAACAATTAACACAATT
51748797 ATCAATTAAT
Statistics
Matches: 98, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
116 89 0.91
117 6 0.06
118 3 0.03
ACGTcount: A:0.38, C:0.10, G:0.11, T:0.42
Consensus pattern (116 bp):
TTAACAATGTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAA
TAAATTTATACTATTTGATAATTTTACTAACAATTAACACAATTTGTTGAC
Found at i:51751546 original size:95 final size:94
Alignment explanation
Indices: 51751383--51751570 Score: 340
Period size: 95 Copynumber: 2.0 Consensus size: 94
51751373 CCGGTCGTAT
*
51751383 GTACATCAGTTGGCGACGTAAATTGTACATATAACTCAATATAAGCTGCTCCACTAGCAAGATGA
1 GTACATCAGTTGACGACGTAAATTGTACATATAACTCAATATAAGCTGCTCCACTAGCAAGATGA
51751448 GTCTGCACCATTGCCTCCAAGCTACGANGG
66 GTCTGCACCATTGCCTCCAAGCTACGA-GG
* *
51751478 GTACATCAGTTGACGATGTAAATTGTACATATAACTCAATATAAGGTGCTCCACTAGCAAGATGA
1 GTACATCAGTTGACGACGTAAATTGTACATATAACTCAATATAAGCTGCTCCACTAGCAAGATGA
51751543 GTCTGCACCATTGCCTCCAAGCTACGAG
66 GTCTGCACCATTGCCTCCAAGCTACGAG
51751571 CACCTTTTAT
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
94 1 0.01
95 89 0.99
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.25
Consensus pattern (94 bp):
GTACATCAGTTGACGACGTAAATTGTACATATAACTCAATATAAGCTGCTCCACTAGCAAGATGA
GTCTGCACCATTGCCTCCAAGCTACGAGG
Found at i:51752147 original size:123 final size:125
Alignment explanation
Indices: 51751920--51752265 Score: 500
Period size: 126 Copynumber: 2.8 Consensus size: 125
51751910 CCCAAACATG
51751920 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * * * *
51751985 TAGAAGCAATTTTATATTATTTGCTCATAAACGT-CAAAAAA-ACTATTTCTCACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACATAAAAAAAAGACTATTTCTCACATGAC
* * * * *
51752043 CTACTGTAGCAAAAGCGCG-CTGATGAGGCCCCGATTTCACAAATTCTTCTCAAAGAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTC-CACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTG
* ** *
51752107 CTAGAAGCGATTTTATACTATTTGCTCAGAAACATAAAAAAAATGATTATTTCTTTCGTGAC
65 CTAGAAGCGATTTTATACTATTTGCTCAGAAACATAAAAAAAA-GACTATTTCTCACATGAC
*
51752169 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCATAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
**
51752234 TAGAAGCGATTTTATACTATTTTATCAGAAAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAAC
51752266 GTCAACTCAA
Statistics
Matches: 196, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
122 1 0.01
123 88 0.45
124 6 0.03
126 100 0.51
127 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAACATAAAAAAAAGACTATTTCTCACATGAC
Found at i:51753622 original size:46 final size:44
Alignment explanation
Indices: 51753545--51753646 Score: 177
Period size: 46 Copynumber: 2.3 Consensus size: 44
51753535 ATATGATCTG
*
51753545 AAAAGAAGAAATAAAAAAATTGTAATAAAGAAATTGAAAATAAT
1 AAAAGAAGAAATAAAAAAATTGTAATAAAGAAATCGAAAATAAT
51753589 AAAAGAAGAAATAAAAAAAATTTGTAATAAAGAAATCGAAAATAAT
1 AAAAGAAGAAAT-AAAAAAA-TTGTAATAAAGAAATCGAAAATAAT
51753635 AAAAGAAGAAAT
1 AAAAGAAGAAAT
51753647 TTGAGAATAA
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
44 12 0.22
45 7 0.13
46 36 0.65
ACGTcount: A:0.69, C:0.01, G:0.12, T:0.19
Consensus pattern (44 bp):
AAAAGAAGAAATAAAAAAATTGTAATAAAGAAATCGAAAATAAT
Found at i:51753679 original size:17 final size:18
Alignment explanation
Indices: 51753653--51753686 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
51753643 AAATTTGAGA
51753653 ATAAAAAAATAA-AAATC
1 ATAAAAAAATAAGAAATC
*
51753670 ATAAATAAATAAGAAAT
1 ATAAAAAAATAAGAAAT
51753687 AGAAATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (18 bp):
ATAAAAAAATAAGAAATC
Found at i:51756857 original size:75 final size:75
Alignment explanation
Indices: 51756769--51756911 Score: 216
Period size: 75 Copynumber: 1.9 Consensus size: 75
51756759 ACTAGCCTGG
* *
51756769 TAAACCGACAAATATAATGGTGTGCCCAACACTAGTCAAATAAA-CTGACAAAGGTTACACCCAG
1 TAAACCAACAAATATAATGGTGTGCCCAACACTAGTCAAATAAATC-GACAAAGATTACACCCAG
51756833 CGCTTGTCTAA
65 CGCTTGTCTAA
* * * *
51756844 TAAACCAATAAATATAATGGTGTGCCCAGCACTAGTCGAATAAATCGACAAAGATTGCACCCAGC
1 TAAACCAACAAATATAATGGTGTGCCCAACACTAGTCAAATAAATCGACAAAGATTACACCCAGC
51756909 GCT
66 GCT
51756912 AGTTGGATAA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
75 60 0.98
76 1 0.02
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.21
Consensus pattern (75 bp):
TAAACCAACAAATATAATGGTGTGCCCAACACTAGTCAAATAAATCGACAAAGATTACACCCAGC
GCTTGTCTAA
Found at i:51757421 original size:11 final size:11
Alignment explanation
Indices: 51757398--51757435 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
51757388 TGTTTCTTTT
51757398 ATTTT-ATTATC
1 ATTTTCATT-TC
51757409 ATTTTCATTTC
1 ATTTTCATTTC
*
51757420 ATTTTCATTTT
1 ATTTTCATTTC
51757431 ATTTT
1 ATTTT
51757436 ATTCTAGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 22 0.88
12 3 0.12
ACGTcount: A:0.21, C:0.11, G:0.00, T:0.68
Consensus pattern (11 bp):
ATTTTCATTTC
Found at i:51758752 original size:38 final size:38
Alignment explanation
Indices: 51758701--51758777 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
51758691 AAATGTGAAT
51758701 ATTAAACAAGCTCAATTTGCTGTTATAGATCAAGAAAG
1 ATTAAACAAGCTCAATTTGCTGTTATAGATCAAGAAAG
*
51758739 ATTAAAGAAGCTCAATTTGCTGTTATAGATCAAGAAAG
1 ATTAAACAAGCTCAATTTGCTGTTATAGATCAAGAAAG
51758777 A
1 A
51758778 CGAGAAATCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.29
Consensus pattern (38 bp):
ATTAAACAAGCTCAATTTGCTGTTATAGATCAAGAAAG
Found at i:51759108 original size:51 final size:51
Alignment explanation
Indices: 51759028--51759359 Score: 273
Period size: 51 Copynumber: 6.7 Consensus size: 51
51759018 TATCGATGAA
* ** * * *
51759028 CACGTGTGTAATACTGTGTGAAGGATACTACGTGTATCGATAAATAATGGT
1 CACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCGATAAATATTGGT
* * * * *
51759079 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGTTTTGGT
1 CACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCGATAAATATTGGT
*
51759130 CACGTGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGA-AAAGCT-TTGGT
1 CACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCGATAAA--TATTGGT
*
51759181 CACGTGTGTAG---T-A---AAGGCTACTATG-GATACCGGA-AAACT-TTGGT
1 CACGTGTGTAGTACTAAGTGAAGGCTACTACGTG-TACC-GATAAA-TATTGGT
* * * * * *
51759225 CACGTATGTAGTACTATGTGAAGGCTACTACGT-CAGCTATAAA-ACTTGAT
1 CACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCGATAAATA-TTGGT
* * * * *
51759275 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTG-TAAA-ACTGAT
1 CACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCGATAAATATTGGT
*
51759324 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 CACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTA
51759360 TCGAATGATA
Statistics
Matches: 238, Mismatches: 27, Indels: 34
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.00
44 33 0.14
45 5 0.02
47 2 0.01
48 1 0.00
49 40 0.17
50 48 0.20
51 107 0.45
52 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (51 bp):
CACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCGATAAATATTGGT
Found at i:51759112 original size:26 final size:26
Alignment explanation
Indices: 51759082--51759165 Score: 68
Period size: 26 Copynumber: 3.3 Consensus size: 26
51759072 TAATGGTCAC
51759082 ATGTGTAGTACTAAGTGAAGGCTACT
1 ATGTGTAGTACTAAGTGAAGGCTACT
* ***
51759108 ATGTGTACCG-A-GAAGTTTTGG-TCAC-
1 ATGTGTA--GTACTAAGTGAAGGCT-ACT
*
51759133 GTGTGTAGTACTAAGTGAAGGCTACT
1 ATGTGTAGTACTAAGTGAAGGCTACT
51759159 ATGTGTA
1 ATGTGTA
51759166 CCGAAAAGCT
Statistics
Matches: 41, Mismatches: 10, Indels: 14
0.63 0.15 0.22
Matches are distributed among these distances:
23 1 0.02
24 1 0.02
25 15 0.37
26 22 0.54
27 1 0.02
28 1 0.02
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.32
Consensus pattern (26 bp):
ATGTGTAGTACTAAGTGAAGGCTACT
Found at i:51759222 original size:44 final size:44
Alignment explanation
Indices: 51759150--51759237 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 44
51759140 GTACTAAGTG
*
51759150 AAGGCTACTATGTGTACCGAAAAGCTTTGGTCACGTGTGTAGTA
1 AAGGCTACTATGTGTACCGAAAAGCTTTGGTCACGTATGTAGTA
51759194 AAGGCTACTATG-GATACCGGAAAA-CTTTGGTCACGTATGTAGTA
1 AAGGCTACTATGTG-TACC-GAAAAGCTTTGGTCACGTATGTAGTA
51759238 CTATGTGAAG
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
43 1 0.02
44 35 0.85
45 5 0.12
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (44 bp):
AAGGCTACTATGTGTACCGAAAAGCTTTGGTCACGTATGTAGTA
Found at i:51759343 original size:49 final size:50
Alignment explanation
Indices: 51759214--51759357 Score: 227
Period size: 50 Copynumber: 2.9 Consensus size: 50
51759204 TGGATACCGG
* * * *
51759214 AAAACTTTGGTCACGTATGTAGTACTATGTGAAGGCTACTACGTCAGCTAT
1 AAAAC-TTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTAT
*
51759265 AAAACTTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTGT
1 AAAACTTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTAT
51759315 AAAAC-TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 AAAACTTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTG
51759358 TATCGAATGA
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
49 38 0.43
50 45 0.51
51 5 0.06
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (50 bp):
AAAACTTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTAT
Found at i:51772359 original size:20 final size:21
Alignment explanation
Indices: 51772320--51772359 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
51772310 ATTTTTCTAT
**
51772320 CACTTCAATTTTTGCTCTGTC
1 CACTTCAATTCCTGCTCTGTC
51772341 CACTTCAATTCCT-CTCTGT
1 CACTTCAATTCCTGCTCTGT
51772360 GATATCCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.33, G:0.07, T:0.45
Consensus pattern (21 bp):
CACTTCAATTCCTGCTCTGTC
Found at i:51781146 original size:22 final size:22
Alignment explanation
Indices: 51781118--51781162 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
51781108 AGCATCATTT
51781118 TACCACCATTATATTACTTCTA
1 TACCACCATTATATTACTTCTA
51781140 TACCACCATTATATTACTTCTA
1 TACCACCATTATATTACTTCTA
51781162 T
1 T
51781163 CTATCACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.00, T:0.42
Consensus pattern (22 bp):
TACCACCATTATATTACTTCTA
Found at i:51782776 original size:125 final size:125
Alignment explanation
Indices: 51782450--51782826 Score: 623
Period size: 125 Copynumber: 3.0 Consensus size: 125
51782440 TTAGAGTTTT
* ** **
51782450 TAGGTCCTGGAAGAAATAATTTTAAGTTGACGTTTCTGATAAAATAGTATAAAATCGCTTCTAGC
1 TAGGTCATGGAAGAAATAATTTT-TTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
*
51782515 AGGATGCTATTTGAGAAGAATTTGTG-AAATCGCGCCCTAGTGGACGCGCTTTTGCTACAG
65 AGGATGCTATTTGAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
* *
51782575 TAGGTCATGGAAGAAATCA-TTTTTTTGACGTTTCTGAGCAAATTGTATAAAATCGCTTCTAGCA
1 TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
* *
51782639 GGATGCTATTTGAGAAGAATTTGTGAAAATCGTGCCCTCGTGGACACGCTTTTGCTACAG
66 GGATGCTATTTGAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
*
51782699 TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGGA
1 TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
*
51782764 GGATGCTATTTGAGAAGAATTTATGAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
66 GGATGCTATTTGAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
51782824 TAG
1 TAG
51782827 CATGTTTGGG
Statistics
Matches: 234, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
123 62 0.26
124 52 0.22
125 120 0.51
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.32
Consensus pattern (125 bp):
TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
GGATGCTATTTGAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
Found at i:51783771 original size:23 final size:23
Alignment explanation
Indices: 51783710--51784196 Score: 635
Period size: 23 Copynumber: 21.8 Consensus size: 23
51783700 AGTTTAGGGT
*
51783710 TTAGGG-TTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
51783732 TTAGGG-TTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
51783754 TTAGGGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
51783777 TTAGAGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
* *
51783800 TTAGGATTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
51783823 TTAGGGTTTTTAAGTTAA--GGG
1 TTAGGGTTTTTAAGTTAATTAGG
51783844 TTAGGGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
51783867 TTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
* * *
51783890 TTAGTGTTTTTAATTTAA--GGG
1 TTAGGGTTTTTAAGTTAATTAGG
51783911 TTAGGGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
51783934 TTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
**
51783957 TTAGGG-TTTTAAGTT-A-GGGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
51783977 TTAAGGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
51784000 TTAGGGTTTTTAAGTTAA--GGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
51784021 TTAGGGTTTTTAAGTTAACTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
51784044 TTAGGGTTTGTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
51784067 TTAGGGTTTTTAAGTTAA--GGG
1 TTAGGGTTTTTAAGTTAATTAGG
* *
51784088 TTAGGGTTCTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
51784111 TTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
* **
51784134 TTAGGGTTTTTAAGTTAA-GAAT
1 TTAGGGTTTTTAAGTTAATTAGG
*
51784156 TTAAGGTTTTTAA-TTAAATTAGG
1 TTAGGGTTTTTAAGTT-AATTAGG
51784179 TTAGGGTTTTTAAGTTAA
1 TTAGGGTTTTTAAGTTAA
51784197 GGGTATTAAT
Statistics
Matches: 408, Mismatches: 42, Indels: 29
0.85 0.09 0.06
Matches are distributed among these distances:
20 7 0.02
21 88 0.22
22 52 0.13
23 259 0.63
24 2 0.00
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (23 bp):
TTAGGGTTTTTAAGTTAATTAGG
Found at i:51783862 original size:44 final size:45
Alignment explanation
Indices: 51783710--51784196 Score: 609
Period size: 44 Copynumber: 10.9 Consensus size: 45
51783700 AGTTTAGGGT
* *
51783710 TTAGGG-TTTTAATTTAATTAGGTTAGGG-TTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA-TAGG
*
51783754 TTAGGGTTTTTAAGTTAATTAGGTTAGAGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA-TAGG
* * *
51783800 TTAGGATTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-GGG
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAATAGG
*
51783844 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA-TAGG
* * *
51783890 TTAGTGTTTTTAATTTAA--GGGTTAGGGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA-TAGG
* **
51783934 TTAGGGTTTTTAATTTAATTAGGTTAGGG-TTTTAAGTT-AGGGG
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAATAGG
* *
51783977 TTAAGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA-GGG
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAATAGG
* *
51784021 TTAGGGTTTTTAAGTTAACTAGGTTAGGGTTTGTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA-TAGG
* * *
51784067 TTAGGGTTTTTAAGTTAA--GGGTTAGGGTTCTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA-TAGG
* * **
51784111 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAAGAAT
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAATAGG
*
51784156 TTAAGGTTTTTAA-TTAAATTAGGTTAGGGTTTTTAAGTTAA
1 TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTTTTAAGTTAA
51784197 GGGTATTAAT
Statistics
Matches: 393, Mismatches: 37, Indels: 25
0.86 0.08 0.05
Matches are distributed among these distances:
43 29 0.07
44 179 0.46
45 68 0.17
46 117 0.30
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (45 bp):
TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAATAGG
Found at i:51783877 original size:67 final size:68
Alignment explanation
Indices: 51783710--51784196 Score: 638
Period size: 67 Copynumber: 7.3 Consensus size: 68
51783700 AGTTTAGGGT
*
51783710 TTAGGG-TTTTAATTTAATTAGGTTAGGG-TTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAAT
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-
51783773 TAGG
65 TAGG
* *
51783777 TTAGAGTTTTTAAGTTAATTAGGTTAGGATTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAAT
*
51783841 GGG
66 AGG
* *
51783844 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGTGTTTTTAATTTAA-
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAAT
*
51783908 GGG
66 AGG
*
51783911 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGG-TTTTAAGTT-AG
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAAT
*
51783974 GGG
66 AGG
* * *
51783977 TTAAGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA--GGGTTAGGGTTTTTAAGTTAAC
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-
51784040 TAGG
65 TAGG
* * * * *
51784044 TTAGGGTTTGTAAGTTAATTAGGTTAGGGTTTTTAAGTTAA--GGGTTAGGGTTCTTAATTTAAT
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-
51784107 TAGG
65 TAGG
* * * ** *
51784111 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-GAATTTAAGGTTTTTAA-TTAAA
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTT-AA
51784174 TTAGG
65 -TAGG
51784179 TTAGGGTTTTTAAGTTAA
1 TTAGGGTTTTTAAGTTAA
51784197 GGGTATTAAT
Statistics
Matches: 384, Mismatches: 28, Indels: 15
0.90 0.07 0.04
Matches are distributed among these distances:
64 8 0.02
65 10 0.03
66 51 0.13
67 226 0.59
68 55 0.14
69 34 0.09
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (68 bp):
TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAAT
AGG
Found at i:51784286 original size:25 final size:25
Alignment explanation
Indices: 51784257--51784304 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
51784247 ATTCAAAAAT
51784257 TTCTATTTTATTACATCAAATAAAC
1 TTCTATTTTATTACATCAAATAAAC
51784282 TTCTATTTTATTACATCAAATAA
1 TTCTATTTTATTACATCAAATAA
51784305 TATCAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.46
Consensus pattern (25 bp):
TTCTATTTTATTACATCAAATAAAC
Found at i:51784684 original size:18 final size:18
Alignment explanation
Indices: 51784661--51784700 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
51784651 GACGCAGAAA
*
51784661 AGGATACATATAAGGGTT
1 AGGATACATATAAGGGCT
51784679 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
51784697 AGGA
1 AGGA
51784701 AACGCACCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.40, C:0.07, G:0.30, T:0.23
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:51785341 original size:7 final size:7
Alignment explanation
Indices: 51785331--51785355 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51785321 TTATATACAT
51785331 AATACTA
1 AATACTA
51785338 AATACTA
1 AATACTA
51785345 AATACTA
1 AATACTA
51785352 AATA
1 AATA
51785356 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:51785563 original size:20 final size:20
Alignment explanation
Indices: 51785526--51785563 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
51785516 TTTATTTTAA
*
51785526 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
51785546 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
51785564 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:51786554 original size:14 final size:11
Alignment explanation
Indices: 51786511--51786550 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
51786501 AAGAGAATTT
51786511 TTGA-AGGAAA
1 TTGAGAGGAAA
51786521 TTGAGAGGAAA
1 TTGAGAGGAAA
51786532 TTGAGAGGAAA
1 TTGAGAGGAAA
51786543 TTTGAGAG
1 -TTGAGAG
51786551 AGGATTAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 4 0.14
11 17 0.61
12 7 0.25
ACGTcount: A:0.42, C:0.00, G:0.35, T:0.23
Consensus pattern (11 bp):
TTGAGAGGAAA
Found at i:51791336 original size:48 final size:48
Alignment explanation
Indices: 51791259--51791354 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
51791249 TGGGCCGGCA
* *
51791259 TTGGCCCAAACCCACGTGGCCGCAAACTGAACTCGCATGATAAGATTG
1 TTGGCCCAAACACACGAGGCCGCAAACTGAACTCGCATGATAAGATTG
** * * *
51791307 TTGGCCCAAACACACGAGGTTGCAGACTGAGCTCGCATGATGAGATTG
1 TTGGCCCAAACACACGAGGCCGCAAACTGAACTCGCATGATAAGATTG
51791355 CGGACTGAGC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.20
Consensus pattern (48 bp):
TTGGCCCAAACACACGAGGCCGCAAACTGAACTCGCATGATAAGATTG
Found at i:51794351 original size:55 final size:54
Alignment explanation
Indices: 51794290--51794422 Score: 142
Period size: 55 Copynumber: 2.4 Consensus size: 54
51794280 TTTTTATTCA
*** * *
51794290 TATAATAATTATATTAAGAATGTTATTAAATTATATATTATTTTATTAAATTTTATT
1 TATAATAATTATATTAA-AATAAGATTAAATTATATA-T-TTTTATTAAAATATATT
*
51794347 TAATAATAATTATATTAAAATAAGATTAAATTATTTATTTTTATTAAAATATATT
1 T-ATAATAATTATATTAAAATAAGATTAAATTATATATTTTTATTAAAATATATT
*
51794402 TAAAAATAAATT-TATTAAAAT
1 T-ATAAT-AATTATATTAAAAT
51794423 TTAATAACAA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
55 30 0.45
56 5 0.07
57 16 0.24
58 16 0.24
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (54 bp):
TATAATAATTATATTAAAATAAGATTAAATTATATATTTTTATTAAAATATATT
Found at i:51794610 original size:16 final size:16
Alignment explanation
Indices: 51794589--51794658 Score: 79
Period size: 16 Copynumber: 4.4 Consensus size: 16
51794579 GAAATTACTG
*
51794589 ATTACAACTTTATTCC
1 ATTACAACTATATTCC
51794605 ATTACAACTATATTCC
1 ATTACAACTATATTCC
* * *
51794621 ATTACAGCTCTATTCA
1 ATTACAACTATATTCC
*
51794637 ATTAC-AGTCATATTCC
1 ATTACAACT-ATATTCC
51794653 ATTACA
1 ATTACA
51794659 GTGAACCAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
15 1 0.02
16 43 0.98
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (16 bp):
ATTACAACTATATTCC
Found at i:51794635 original size:32 final size:32
Alignment explanation
Indices: 51794589--51794659 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
51794579 GAAATTACTG
* * *
51794589 ATTACAACTTTATTCCATTACAACT-ATATTCC
1 ATTACAGCTCTATTCAATTAC-ACTCATATTCC
*
51794621 ATTACAGCTCTATTCAATTACAGTCATATTCC
1 ATTACAGCTCTATTCAATTACACTCATATTCC
51794653 ATTACAG
1 ATTACAG
51794660 TGAACCAAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 2 0.06
32 32 0.94
ACGTcount: A:0.34, C:0.24, G:0.04, T:0.38
Consensus pattern (32 bp):
ATTACAGCTCTATTCAATTACACTCATATTCC
Found at i:51795219 original size:4 final size:4
Alignment explanation
Indices: 51795212--51795260 Score: 71
Period size: 4 Copynumber: 12.0 Consensus size: 4
51795202 TATTTGCTTG
* *
51795212 TAAA TAAA TAAA TAAA TAAA TAAAA TGAA TGAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA T-AAA TAAA TAAA TAAA TAAA TAAA TAAA
51795261 AGCTCTAGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
4 38 0.90
5 4 0.10
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:51795246 original size:21 final size:21
Alignment explanation
Indices: 51795213--51795260 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
51795203 ATTTGCTTGT
51795213 AAATAAATAAATAAATAAATA
1 AAATAAATAAATAAATAAATA
* *
51795234 AAATGAATGAATAAATAAAT-
1 AAATAAATAAATAAATAAATA
51795254 AAATAAA
1 AAATAAA
51795261 AGCTCTAGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (21 bp):
AAATAAATAAATAAATAAATA
Found at i:51796876 original size:16 final size:17
Alignment explanation
Indices: 51796845--51796877 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51796835 ACAAAATCAA
51796845 AATTTATTTCCCAATTT
1 AATTTATTTCCCAATTT
51796862 AATTTATTT-CCAATTT
1 AATTTATTTCCCAATTT
51796878 GTTTAACTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.55
Consensus pattern (17 bp):
AATTTATTTCCCAATTT
Found at i:51806332 original size:27 final size:27
Alignment explanation
Indices: 51806266--51806333 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
51806256 CCCAAACTGA
*
51806266 TATAAAATGACTGTTATGCCCCCACGT
1 TATAAAATGACTATTATGCCCCCACGT
* * * *
51806293 GATAAAATAACTATTATGCCCCTATGT
1 TATAAAATGACTATTATGCCCCCACGT
*
51806320 TATAAATTGACTAT
1 TATAAAATGACTAT
51806334 ATGGTCTATG
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (27 bp):
TATAAAATGACTATTATGCCCCCACGT
Found at i:51810250 original size:6 final size:6
Alignment explanation
Indices: 51810237--51810266 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
51810227 AAAGAAATTC
51810237 AAAG-A AAAGAA AAAGAA AAAGAA AAAGAA A
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA A
51810267 GAGAGTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:51810267 original size:27 final size:28
Alignment explanation
Indices: 51810211--51810268 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
51810201 ATTGCGAGCG
* **
51810211 AGAAAATGAAAATGAAAAAGAAATTCAA
1 AGAAAATGAAAAAGAAAAAGAAAAACAA
*
51810239 AGAAAA-GAAAAAGAAAAAGAAAAAGAA
1 AGAAAATGAAAAAGAAAAAGAAAAACAA
51810266 AGA
1 AGA
51810269 GAGTTTGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 20 0.77
28 6 0.23
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.07
Consensus pattern (28 bp):
AGAAAATGAAAAAGAAAAAGAAAAACAA
Found at i:51810297 original size:33 final size:34
Alignment explanation
Indices: 51810260--51810333 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 34
51810250 AGAAAAAGAA
* *
51810260 AAAGAAAGAGAGTTTG-AAAAGAAATCGAGTG-AG
1 AAAGAAAAAGAGTCTGCAAAAGAAA-CGAGTGAAG
51810293 AAAGAAAAAGAGTCTGCAAAAGAAACGAGTGAAG
1 AAAGAAAAAGAGTCTGCAAAAGAAACGAGTGAAG
51810327 AAAGAAA
1 AAAGAAA
51810334 TCAAGTAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
33 20 0.54
34 17 0.46
ACGTcount: A:0.57, C:0.05, G:0.27, T:0.11
Consensus pattern (34 bp):
AAAGAAAAAGAGTCTGCAAAAGAAACGAGTGAAG
Found at i:51810298 original size:16 final size:17
Alignment explanation
Indices: 51810277--51810335 Score: 52
Period size: 16 Copynumber: 3.5 Consensus size: 17
51810267 GAGAGTTTGA
51810277 AAAGAAATCGAGTG-AG
1 AAAGAAATCGAGTGAAG
** *
51810293 AAAGAAAAAGAGTCTGCA-
1 AAAGAAATCGAG--TGAAG
51810311 AAAGAAA-CGAGTGAAG
1 AAAGAAATCGAGTGAAG
51810327 AAAGAAATC
1 AAAGAAATC
51810336 AAGTAAAAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
15 3 0.09
16 17 0.50
17 4 0.12
18 9 0.26
19 1 0.03
ACGTcount: A:0.56, C:0.08, G:0.25, T:0.10
Consensus pattern (17 bp):
AAAGAAATCGAGTGAAG
Found at i:51818171 original size:25 final size:25
Alignment explanation
Indices: 51818137--51818224 Score: 86
Period size: 25 Copynumber: 3.5 Consensus size: 25
51818127 TGACCCACAG
* ***
51818137 CTCGCGAGAGCATACTGGTTTACAA
1 CTCGTGAGAGCATACCAATTTACAA
* **
51818162 CTCGTGAGAGCAAACCAATTTATTA
1 CTCGTGAGAGCATACCAATTTACAA
* *
51818187 CTCGTGAGAGCATACCAATTTATAG
1 CTCGTGAGAGCATACCAATTTACAA
*
51818212 CTCGTGTGAGCAT
1 CTCGTGAGAGCAT
51818225 TCATGTAGAA
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 52 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (25 bp):
CTCGTGAGAGCATACCAATTTACAA
Found at i:51818699 original size:21 final size:22
Alignment explanation
Indices: 51818658--51818700 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
51818648 GCATGCATAG
*
51818658 GTATTTTGGCTAATGTGGCCAT
1 GTATTTTGGCTAATATGGCCAT
*
51818680 GTATTTTGGTTAA-ATGGCCAT
1 GTATTTTGGCTAATATGGCCAT
51818701 TTGTTTGGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.21, C:0.12, G:0.26, T:0.42
Consensus pattern (22 bp):
GTATTTTGGCTAATATGGCCAT
Found at i:51825631 original size:23 final size:23
Alignment explanation
Indices: 51825601--51825649 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
51825591 TATGAATTAC
* *
51825601 ATGGAAAT-GTTGTTACATGTTAT
1 ATGGAAATAGATGATACATG-TAT
51825624 ATGGAAATAGATGATACATGTAT
1 ATGGAAATAGATGATACATGTAT
51825647 ATG
1 ATG
51825650 AAACATAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.37, C:0.04, G:0.22, T:0.37
Consensus pattern (23 bp):
ATGGAAATAGATGATACATGTAT
Found at i:51837454 original size:171 final size:171
Alignment explanation
Indices: 51837169--51837504 Score: 654
Period size: 171 Copynumber: 2.0 Consensus size: 171
51837159 TACAAAAAGG
* *
51837169 AAGACTAAGTTGGACCCAAGGGGCGATGGGCCTTTCCAAGTACTCGAGCGGATCAACGATAATGC
1 AAGACTAAATTGGACCCAAGGGGCGATGGGCATTTCCAAGTACTCGAGCGGATCAACGATAATGC
51837234 CTATAAAATTGATCTACCTGGTGAGTACAATGTGAGTTCTACTTTTAATGTGGCTGACTTGTCCC
66 CTATAAAATTGATCTACCTGGTGAGTACAATGTGAGTTCTACTTTTAATGTGGCTGACTTGTCCC
51837299 CATTTGATTTTTCAGATTCGAGGACGAATCTTTTTGAGGTA
131 CATTTGATTTTTCAGATTCGAGGACGAATCTTTTTGAGGTA
51837340 AAGACTAAATTGGACCCAAGGGGCGATGGGCATTTCCAAGTACTCGAGCGGATCAACGATAATGC
1 AAGACTAAATTGGACCCAAGGGGCGATGGGCATTTCCAAGTACTCGAGCGGATCAACGATAATGC
51837405 CTATAAAATTGATCTACCTGGTGAGTACAATGTGAGTTCTACTTTTAATGTGGCTGACTTGTCCC
66 CTATAAAATTGATCTACCTGGTGAGTACAATGTGAGTTCTACTTTTAATGTGGCTGACTTGTCCC
51837470 CATTTGATTTTTCAGATTCGAGGACGAATCTTTTT
131 CATTTGATTTTTCAGATTCGAGGACGAATCTTTTT
51837505 TAGGAAGGGG
Statistics
Matches: 163, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
171 163 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (171 bp):
AAGACTAAATTGGACCCAAGGGGCGATGGGCATTTCCAAGTACTCGAGCGGATCAACGATAATGC
CTATAAAATTGATCTACCTGGTGAGTACAATGTGAGTTCTACTTTTAATGTGGCTGACTTGTCCC
CATTTGATTTTTCAGATTCGAGGACGAATCTTTTTGAGGTA
Found at i:51848915 original size:18 final size:19
Alignment explanation
Indices: 51848888--51848923 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
51848878 TCACATGCCA
*
51848888 AAGTGTAAAA-TGATTTTT
1 AAGTGAAAAAGTGATTTTT
51848906 AAGTGAAAAAGTGATTTT
1 AAGTGAAAAAGTGATTTT
51848924 GGCCATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (19 bp):
AAGTGAAAAAGTGATTTTT
Found at i:51851341 original size:9 final size:8
Alignment explanation
Indices: 51851312--51851350 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
51851302 ACCCATATAA
51851312 TATTTTT-
1 TATTTTTC
51851319 TATTTTTC
1 TATTTTTC
*
51851327 TTTTTTTCC
1 TATTTTT-C
51851336 TATTTTTC
1 TATTTTTC
51851344 TATTTTT
1 TATTTTT
51851351 TCACTTTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
7 7 0.25
8 14 0.50
9 7 0.25
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.79
Consensus pattern (8 bp):
TATTTTTC
Found at i:51851341 original size:17 final size:18
Alignment explanation
Indices: 51851319--51851352 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
51851309 TAATATTTTT
51851319 TATTTTTCT-TTTTTTCC
1 TATTTTTCTATTTTTTCC
51851336 TATTTTTCTATTTTTTC
1 TATTTTTCTATTTTTTC
51851353 ACTTTTTCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (18 bp):
TATTTTTCTATTTTTTCC
Found at i:51851358 original size:17 final size:17
Alignment explanation
Indices: 51851312--51851360 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
51851302 ACCCATATAA
51851312 TATTTTTT-A-TTTTTC
1 TATTTTTTCACTTTTTC
51851327 T-TTTTTTC-CTATTTTTC
1 TATTTTTTCAC--TTTTTC
51851344 TATTTTTTCACTTTTTC
1 TATTTTTTCACTTTTTC
51851361 GATCACTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
14 6 0.21
15 1 0.04
17 13 0.46
18 7 0.25
19 1 0.04
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (17 bp):
TATTTTTTCACTTTTTC
Found at i:51859996 original size:17 final size:17
Alignment explanation
Indices: 51859942--51859996 Score: 83
Period size: 17 Copynumber: 3.2 Consensus size: 17
51859932 GTAGATGATC
*
51859942 TGGCGAACTCTAAGGTT
1 TGGCAAACTCTAAGGTT
*
51859959 TGGAAAACTCTAAGGTT
1 TGGCAAACTCTAAGGTT
*
51859976 TGGCAAACTCTAGGGTT
1 TGGCAAACTCTAAGGTT
51859993 TGGC
1 TGGC
51859997 GGACCCTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (17 bp):
TGGCAAACTCTAAGGTT
Found at i:51866818 original size:21 final size:22
Alignment explanation
Indices: 51866789--51866829 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
51866779 AGTTTCTTGA
51866789 CAACATCTA-TCATTGCCTTAT
1 CAACATCTATTCATTGCCTTAT
* *
51866810 CAACTTCTATTCCTTGCCTT
1 CAACATCTATTCATTGCCTT
51866830 GTAGTTTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.22, C:0.32, G:0.05, T:0.41
Consensus pattern (22 bp):
CAACATCTATTCATTGCCTTAT
Found at i:51875303 original size:200 final size:201
Alignment explanation
Indices: 51874960--51875360 Score: 786
Period size: 200 Copynumber: 2.0 Consensus size: 201
51874950 AGAAGCTGAG
*
51874960 TGAATTATGGCATTAAAGCTTGAAGAGTCTATTTTCTTACAAAAGAAACTATAAAAACAAAAGAG
1 TGAATTATGCCATTAAAGCTTGAAGAGTCTATTTTCTTACAAAAGAAACTATAAAAACAAAAGAG
51875025 TTACCGATCTTGAGATATTTGAAGTATTGTGGGGCTGAGTCAAAATGACTACTAGATTCCCTGTT
66 TTACCGATCTTGAGATATTTGAAGTATTGTGGGGCTGAGTCAAAATGACTACTAGATTCCCTGTT
51875090 CTGTTTTTAGGAAATCATTATAAATTGTACAAAAATGATTATAAG-TAAAATTTATATGCTTAGA
131 CTGTTTTTAGGAAATCATTATAAATTGTACAAAAATGATTATAAGATAAAATTTATATGCTTAGA
51875154 CTCCTT
196 CTCCTT
51875160 TGAATTATGCCATTAAAGCTTGAAGAGTCTATTTTCTTACAAAAGAAACTATAAAAACAAAAGAG
1 TGAATTATGCCATTAAAGCTTGAAGAGTCTATTTTCTTACAAAAGAAACTATAAAAACAAAAGAG
51875225 TTACCGATCTTGAGATATTTGAAGTATTGTGGGGCTGAGTCAAAATGACTACTAGATTCCCTGTT
66 TTACCGATCTTGAGATATTTGAAGTATTGTGGGGCTGAGTCAAAATGACTACTAGATTCCCTGTT
51875290 CTGTTTTTAGGAAATCATTATAAATTGTACAAAAATGATTATAAGATAAAATTTATATGCTTAGA
131 CTGTTTTTAGGAAATCATTATAAATTGTACAAAAATGATTATAAGATAAAATTTATATGCTTAGA
51875355 CTCCTT
196 CTCCTT
51875361 AATGAGTCTA
Statistics
Matches: 199, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
200 174 0.87
201 25 0.13
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.34
Consensus pattern (201 bp):
TGAATTATGCCATTAAAGCTTGAAGAGTCTATTTTCTTACAAAAGAAACTATAAAAACAAAAGAG
TTACCGATCTTGAGATATTTGAAGTATTGTGGGGCTGAGTCAAAATGACTACTAGATTCCCTGTT
CTGTTTTTAGGAAATCATTATAAATTGTACAAAAATGATTATAAGATAAAATTTATATGCTTAGA
CTCCTT
Found at i:51876167 original size:27 final size:27
Alignment explanation
Indices: 51876136--51876313 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51876126 TAAATTGTAC
51876136 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
51876163 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51876189 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
51876217 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
51876245 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51876272 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
51876299 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
51876314 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:51876250 original size:82 final size:81
Alignment explanation
Indices: 51876137--51876292 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51876127 AAATTGTACA
* *
51876137 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
51876201 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
51876218 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
51876283 TGCGAGTTGA
65 TGCGAATTGA
51876293 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:51876304 original size:82 final size:81
Alignment explanation
Indices: 51876133--51876313 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
51876123 GATTAAATTG
* *
51876133 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
51876198 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
51876214 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
51876278 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
51876296 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
51876314 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:51881839 original size:65 final size:65
Alignment explanation
Indices: 51881733--51881863 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
51881723 TTGAGTTTAG
51881733 TGGTTCATGGGAACGGTATGTACCTTTGATTGAATTCGCTTACAACAATAGTTTTCAATCAAGTA
1 TGGTTCATGGGAACGGTATGTACCTTTGATTGAATTCGCTTACAACAATAGTTTTCAATCAAGTA
* *
51881798 TGGTTCATGGGAACGGTATTTACCTTTGATTGAATTTGCTTACAACAATAGTTTTCAATCAAGTA
1 TGGTTCATGGGAACGGTATGTACCTTTGATTGAATTCGCTTACAACAATAGTTTTCAATCAAGTA
51881863 T
1 T
51881864 TAAGATGGCA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (65 bp):
TGGTTCATGGGAACGGTATGTACCTTTGATTGAATTCGCTTACAACAATAGTTTTCAATCAAGTA
Found at i:51882751 original size:414 final size:414
Alignment explanation
Indices: 51882030--51882853 Score: 1495
Period size: 414 Copynumber: 2.0 Consensus size: 414
51882020 TCGTCAGAAG
*
51882030 TCGTACGCGGATTTGAAACGAAAAGACATTGAATATCAGGTGGGAGATAAAGTGTTTCTTAAAGT
1 TCGTACGCGGATTTGAAACGAAAAGACATTGAATATCAGGTGGGAGATAAAGTGTTCCTTAAAGT
*
51882095 TTCGCCTTGGAAAAAGGTACTTAGGTTTGGCCGTAAGGGCAAGTTGAGCCCGAGATTCATTGGGC
66 TTCGCCTTGGAAAAAGGTACTCAGGTTTGGCCGTAAGGGCAAGTTGAGCCCGAGATTCATTGGGC
*
51882160 CGTACGAAATCTCCGAATGAGTGGGGCCAGTTGCGTATAGATTGATTTTGCCCCCTGAGCTTGAA
131 CGTACGAAATCTCCGAACGAGTGGGGCCAGTTGCGTATAGATTGATTTTGCCCCCTGAGCTTGAA
*
51882225 AAGATCCATGACGTCTTTCATGTTTCGATGCTTCGACGCTATAGATCTGATCCATCGCACATAAT
196 AAGATCCACGACGTCTTTCATGTTTCGATGCTTCGACGCTATAGATCTGATCCATCGCACATAAT
*
51882290 TAGCCCATCAGAGGTTGAAATTCAAGCCGATATGAGTTATGAAGAAGAACCGATGCGTATCCTAG
261 TAGCCCATCAGAGGTTGAAATTCAAGCCGATATGAGTTATGAAGAAGAACCGATACGTATCCTAG
51882355 CTCGTGAAGTGAAGGAGTTACGAAACAAAAGAGTTCCGCTAGTAAAGGTGTTATGGCTCAAACAC
326 CTCGTGAAGTGAAGGAGTTACGAAACAAAAGAGTTCCGCTAGTAAAGGTGTTATGGCTCAAACAC
51882420 GGGATCGAGGAAGCTACTTGAAAA
391 GGGATCGAGGAAGCTACTTGAAAA
* *
51882444 TCGTATGCGGATTTGAAACGAAAGGACATTGAATATCAGGTGGGAGATAAAGTGTTCCTTAAAGT
1 TCGTACGCGGATTTGAAACGAAAAGACATTGAATATCAGGTGGGAGATAAAGTGTTCCTTAAAGT
51882509 TTCGCCTTGGAAAAAGGTACTCAGGTTTGGCCGTAAGGGCAAGTTGAGCCCGAGATTCATTGGGC
66 TTCGCCTTGGAAAAAGGTACTCAGGTTTGGCCGTAAGGGCAAGTTGAGCCCGAGATTCATTGGGC
* * *
51882574 CGTACGAAATCTCCGAACGAGTTGGTCCGGTTGCGTATAGATTGATTTTGCCCCCTGAGCTTGAA
131 CGTACGAAATCTCCGAACGAGTGGGGCCAGTTGCGTATAGATTGATTTTGCCCCCTGAGCTTGAA
* *
51882639 AAGATTCACGACGTCTTTCATGTTTCGATGCTTCGACGCTATCGATCTGATCCATCGCACATAAT
196 AAGATCCACGACGTCTTTCATGTTTCGATGCTTCGACGCTATAGATCTGATCCATCGCACATAAT
*
51882704 TAGCCCATCAGAGGTTGAAATTCAAGCCGATATGAGTTATGAAGAAGAACCGATACGTGTCCTAG
261 TAGCCCATCAGAGGTTGAAATTCAAGCCGATATGAGTTATGAAGAAGAACCGATACGTATCCTAG
* * * *
51882769 CTCGTGAAGTGAAGGAGTTGCGAAACAAAAGGGTTCCGTTAGTGAAGGTGTTATGGCTCAAACAC
326 CTCGTGAAGTGAAGGAGTTACGAAACAAAAGAGTTCCGCTAGTAAAGGTGTTATGGCTCAAACAC
51882834 GGGATCGAGGAAGCTACTTG
391 GGGATCGAGGAAGCTACTTG
51882854 GGAAACCGAG
Statistics
Matches: 393, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
414 393 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (414 bp):
TCGTACGCGGATTTGAAACGAAAAGACATTGAATATCAGGTGGGAGATAAAGTGTTCCTTAAAGT
TTCGCCTTGGAAAAAGGTACTCAGGTTTGGCCGTAAGGGCAAGTTGAGCCCGAGATTCATTGGGC
CGTACGAAATCTCCGAACGAGTGGGGCCAGTTGCGTATAGATTGATTTTGCCCCCTGAGCTTGAA
AAGATCCACGACGTCTTTCATGTTTCGATGCTTCGACGCTATAGATCTGATCCATCGCACATAAT
TAGCCCATCAGAGGTTGAAATTCAAGCCGATATGAGTTATGAAGAAGAACCGATACGTATCCTAG
CTCGTGAAGTGAAGGAGTTACGAAACAAAAGAGTTCCGCTAGTAAAGGTGTTATGGCTCAAACAC
GGGATCGAGGAAGCTACTTGAAAA
Found at i:51884647 original size:79 final size:80
Alignment explanation
Indices: 51884487--51884711 Score: 264
Period size: 79 Copynumber: 2.8 Consensus size: 80
51884477 TTGAATGATG
* * * * * *
51884487 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
51884550 TTGTGCGAGATACTAAA
64 TTGTGCGAGATACTAAA
*
51884567 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCA
*
51884628 TTTGTGCGAGTTACTAAA
63 TTTGTGCGAGATACTAAA
** *
51884646 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
51884711 G
66 G
51884712 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
78 2 0.02
79 68 0.54
80 46 0.37
81 9 0.07
82 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:51884675 original size:40 final size:40
Alignment explanation
Indices: 51884487--51884711 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
51884477 TTGAATGATG
* * * *
51884487 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
51884527 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
51884567 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
51884607 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51884646 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51884687 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51884712 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51884703 original size:119 final size:120
Alignment explanation
Indices: 51884487--51884711 Score: 291
Period size: 119 Copynumber: 1.9 Consensus size: 120
51884477 TTGAATGATG
*
51884487 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
51884552 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
* * * **
51884607 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* *
51884669 TTGTGCGA-ATTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TTGTGCGAGA-TACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
51884712 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
118 3 0.03
119 69 0.75
120 20 0.22
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:51884744 original size:79 final size:79
Alignment explanation
Indices: 51884540--51884736 Score: 199
Period size: 79 Copynumber: 2.5 Consensus size: 79
51884530 GGACTAAGAT
** **
51884540 CCGAAGGCATTTGTGCGAGAT-ACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAA-ATCCCGAAGGCATTTGTGCGAGATAC
*
51884603 TAATTCCGGGCTAAGC
64 TAATACCGGGCTAAGC
** * *
51884619 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGA-TACT
*
51884683 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
*
51884699 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAAT
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAAT
51884737 TTCGAAGGTA
Statistics
Matches: 102, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
78 5 0.05
79 72 0.71
80 25 0.25
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:51888134 original size:15 final size:15
Alignment explanation
Indices: 51888090--51888162 Score: 76
Period size: 15 Copynumber: 4.9 Consensus size: 15
51888080 TATGAAATTG
*
51888090 TATCTTAGATTTCTA
1 TATCTTAGATTTCTT
*
51888105 TATCTTGGATTTCTT
1 TATCTTAGATTTCTT
51888120 TATCTTAGATTTCTT
1 TATCTTAGATTTCTT
* * *
51888135 TGTCCTAGACATT-TT
1 TATCTTAGA-TTTCTT
*
51888150 TATCTTAGTTTTC
1 TATCTTAGATTTC
51888163 ATGTCATCTC
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
14 2 0.04
15 42 0.91
16 2 0.04
ACGTcount: A:0.19, C:0.15, G:0.10, T:0.56
Consensus pattern (15 bp):
TATCTTAGATTTCTT
Found at i:51889697 original size:13 final size:13
Alignment explanation
Indices: 51889675--51889707 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
51889665 AAGGGTTTGT
51889675 TTAT-TAAACTAA
1 TTATCTAAACTAA
51889687 TTATCTAAACTAA
1 TTATCTAAACTAA
*
51889700 TTAACTAA
1 TTATCTAA
51889708 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:51900552 original size:37 final size:37
Alignment explanation
Indices: 51900493--51900601 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
51900483 AGCCCAGACG
* *
51900493 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
51900530 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
51900567 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
51900602 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:51900804 original size:50 final size:50
Alignment explanation
Indices: 51900750--51900931 Score: 257
Period size: 48 Copynumber: 3.7 Consensus size: 50
51900740 CATCGCCTAC
*
51900750 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* * *
51900800 ATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTC--ATAC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATATAT
* * *
51900848 ATATTTCACATTAGCCATTCGACTTTACCACATATACATTTCTCATACAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
51900898 -T-TTTCACATTAGCCATTCGGCTTTACCACATATA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATA
51900932 TGCATGTTCA
Statistics
Matches: 117, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
48 73 0.62
49 3 0.03
50 41 0.35
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (50 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:51900936 original size:98 final size:98
Alignment explanation
Indices: 51900747--51900930 Score: 293
Period size: 98 Copynumber: 1.9 Consensus size: 98
51900737 GCACATCGCC
* *
51900747 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATACATATATTTCACATT
51900812 GACCATTCAGCTTTACCACATATGCATATCTCA
66 GACCATTCAGCTTTACCACATATGCATATCTCA
* *
51900845 TACATATTTCACATTAGCCATTCGACTTTACCACATATACATTTCTCATACAT-T-TTTCACATT
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATACATATATTTCACATT
*
51900908 -AGCCATTCGGCTTTACCACATAT
66 GA-CCATTCAGCTTTACCACATAT
51900931 ATGCATGTTC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 1 0.01
96 29 0.36
97 1 0.01
98 49 0.61
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.37
Consensus pattern (98 bp):
TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATACATATATTTCACATT
GACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:51900964 original size:47 final size:47
Alignment explanation
Indices: 51900901--51901093 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
51900891 CATACATTTT
* * * *
51900901 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * * *
51900948 CCACATTGGCCATTCGGCCTTATAACACATATGCGTGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
51900995 TCACATTGGCC-TTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
51901041 TCACATTGGCCATTCGGCCTTATCTCATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
51901088 TCACAT
1 TCACAT
51901094 AAAATCCTAA
Statistics
Matches: 128, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
46 42 0.33
47 86 0.67
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:51901073 original size:93 final size:94
Alignment explanation
Indices: 51900901--51901093 Score: 271
Period size: 93 Copynumber: 2.1 Consensus size: 94
51900891 CATACATTTT
* *
51900901 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATTAGCCATTCGGCCTTACCACATATATGCATGTTCACATTCACCACATTGGCCATTCGGC
***
51900966 CTTATAACACATATGCGTGCTCACATTCA
66 CTTATAACACATATGCACACTCACATTCA
* * *
51900995 TCACATTGGCC-TTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 TCACATTAGCCATTCGGCCTTACCACATATATGCATGTTCACATTCACCACATTGGCCATTCGGC
** * *
51901059 CTTATCTCATATATGCACATTCACATTCA
66 CTTATAACACATATGCACACTCACATTCA
51901088 TCACAT
1 TCACAT
51901094 AAAATCCTAA
Statistics
Matches: 87, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
93 77 0.89
94 10 0.11
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (94 bp):
TCACATTAGCCATTCGGCCTTACCACATATATGCATGTTCACATTCACCACATTGGCCATTCGGC
CTTATAACACATATGCACACTCACATTCA
Found at i:51901094 original size:25 final size:25
Alignment explanation
Indices: 51901015--51901094 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
51901005 CTTCGGCCTT
**
51901015 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* * *
51901040 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
*
51901062 ATCTCATATATGCACATTCACATTC
1 ATCACATATATGCACATTCACATTC
51901087 ATCACATA
1 ATCACATA
51901095 AAATCCTAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
22 9 0.22
23 6 0.15
24 6 0.15
25 19 0.47
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:51907013 original size:41 final size:41
Alignment explanation
Indices: 51906968--51907051 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
51906958 GGTCATGGGA
*
51906968 TCTACAACTCCCCGAATGCCATTTACCGCAATATCGGCATT
1 TCTACAACTCCCCGAATGCCATTTACCGCAATATCGACATT
51907009 TCTACAACTCCCCGAATGCCATTTACCGCAATATCGACATT
1 TCTACAACTCCCCGAATGCCATTTACCGCAATATCGACATT
51907050 TC
1 TC
51907052 GTTCTATCTC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.27, C:0.35, G:0.11, T:0.27
Consensus pattern (41 bp):
TCTACAACTCCCCGAATGCCATTTACCGCAATATCGACATT
Found at i:51909628 original size:40 final size:40
Alignment explanation
Indices: 51909576--51909847 Score: 436
Period size: 40 Copynumber: 6.8 Consensus size: 40
51909566 ATAACCACAA
* * * *
51909576 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
51909616 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
51909656 GCACAATTGCCTCCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
51909696 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
51909736 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
*
51909778 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
51909818 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
51909848 GTATTCAAAT
Statistics
Matches: 217, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
40 177 0.82
42 40 0.18
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:51917345 original size:10 final size:10
Alignment explanation
Indices: 51917332--51917391 Score: 56
Period size: 10 Copynumber: 6.2 Consensus size: 10
51917322 TGATGAATAA
51917332 AACAATAAAT
1 AACAATAAAT
51917342 AACAATAAAT
1 AACAATAAAT
*
51917352 AAC----AAC
1 AACAATAAAT
51917358 AACAATAAAT
1 AACAATAAAT
*
51917368 AACAACGATAAT
1 AACAA-TA-AAT
51917380 AACAATAAAT
1 AACAATAAAT
51917390 AA
1 AA
51917392 TACAACACAT
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
6 5 0.12
10 25 0.62
11 2 0.05
12 8 0.20
ACGTcount: A:0.68, C:0.13, G:0.02, T:0.17
Consensus pattern (10 bp):
AACAATAAAT
Found at i:51917352 original size:22 final size:22
Alignment explanation
Indices: 51917327--51917391 Score: 60
Period size: 22 Copynumber: 2.8 Consensus size: 22
51917317 AATAATGATG
51917327 AATAA-AACAATAAATAACAATA
1 AATAACAACAATAAATAACAA-A
*
51917349 AATAACAACAACAATAAATAACAAC
1 AAT---AACAACAATAAATAACAAA
* *
51917374 GATAATAACAATAAATAA
1 AATAACAACAATAAATAA
51917392 TACAACACAT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
22 17 0.47
25 4 0.11
26 15 0.42
ACGTcount: A:0.69, C:0.12, G:0.02, T:0.17
Consensus pattern (22 bp):
AATAACAACAATAAATAACAAA
Found at i:51917380 original size:12 final size:12
Alignment explanation
Indices: 51917327--51917406 Score: 65
Period size: 12 Copynumber: 6.4 Consensus size: 12
51917317 AATAATGATG
51917327 AATAA-AACAAT
1 AATAACAACAAT
*
51917338 AAATAACAATAAAT
1 -AATAACAA-CAAT
*
51917352 AACAACAACAAT
1 AATAACAACAAT
*
51917364 AAATAACAACGAT
1 -AATAACAACAAT
*
51917377 AATAACAATAAAT
1 AATAACAA-CAAT
51917390 AAT-ACAACACAT
1 AATAACAACA-AT
51917402 AATAA
1 AATAA
51917407 GACAATATTA
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
11 1 0.02
12 25 0.46
13 25 0.46
14 3 0.06
ACGTcount: A:0.68, C:0.14, G:0.01, T:0.17
Consensus pattern (12 bp):
AATAACAACAAT
Found at i:51917381 original size:16 final size:16
Alignment explanation
Indices: 51917342--51917373 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
51917332 AACAATAAAT
51917342 AACAATAAATAACAAC
1 AACAATAAATAACAAC
51917358 AACAATAAATAACAAC
1 AACAATAAATAACAAC
51917374 GATAATAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.69, C:0.19, G:0.00, T:0.12
Consensus pattern (16 bp):
AACAATAAATAACAAC
Found at i:51919458 original size:132 final size:132
Alignment explanation
Indices: 51919029--51919521 Score: 731
Period size: 132 Copynumber: 3.7 Consensus size: 132
51919019 AATGTCAAGG
* * * * *
51919029 AGATAAGATTCACTGCCTTCT-ATCTGCTCTACTACTACTTAGGGAGACAGGATCTACAGTCTTC
1 AGATAAGATTCACCGTCTT-TGATCTGCTCCACTACTACTTAAGGAGACAGGATCTACAATCTTC
* * *
51919093 AACCTATTCCACTACTG-CCTAGGGAGATAGGGCTGGTGGCTTAAATCAGCTTCCTTACTACCTT
65 AACCTATTCCACTACTGTCC-AGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTT
51919157 GGGA
129 GGGA
* *
51919161 AGATAAGATTCACCGTCTTTGATCTGCTCCACTACTATTTAAGGAGACAAGATCTACAATCTTCA
1 AGATAAGATTCACCGTCTTTGATCTGCTCCACTACTACTTAAGGAGACAGGATCTACAATCTTCA
*
51919226 ACCTATTCCACTGCTGTCCAGGGAGATAGGACT-GTGGCTTAAATCTGCTTCCCTACTACCTTGG
66 ACCTATTCCACTACTGTCCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGG
51919290 GA
131 GA
* * * *
51919292 AGATAAGATTCACCGTCCTTGATCTGCTCTACTACTGCTTAAGGAGACAGGATGTACAATCTTCA
1 AGATAAGATTCACCGTCTTTGATCTGCTCCACTACTACTTAAGGAGACAGGATCTACAATCTTCA
* * * * *
51919357 ACCTAATCCACTGCTATCCAGGGAGATAGGACTGGCGGCTTAAATCTGCTTCCCTACTATCTTGG
66 ACCTATTCCACTACTGTCCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGG
51919422 GA
131 GA
* * *
51919424 AGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCA
1 AGATAAGATTCACCGTCTTTGATCTGCTCCACTACTACTTAAGGAGACAGGATCTACAATCTTCA
*
51919489 ACCTATTCCACTACTGTCCAAGGAGATAGGACT
66 ACCTATTCCACTACTGTCCAGGGAGATAGGACT
51919522 TACAATCTTC
Statistics
Matches: 328, Mismatches: 30, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
131 122 0.37
132 204 0.62
133 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (132 bp):
AGATAAGATTCACCGTCTTTGATCTGCTCCACTACTACTTAAGGAGACAGGATCTACAATCTTCA
ACCTATTCCACTACTGTCCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGG
GA
Found at i:51919496 original size:263 final size:263
Alignment explanation
Indices: 51919029--51919521 Score: 765
Period size: 263 Copynumber: 1.9 Consensus size: 263
51919019 AATGTCAAGG
* * * *
51919029 AGATAAGATTCACTGCCTTCTATCTGCTCTACTACTACTTAGGGAGACAGGATCTACAGTCTTCA
1 AGATAAGATTCACCGCCTTCGATCTGCTCTACTACTACTTAAGGAGACAGGATCTACAATCTTCA
* * * *
51919094 ACCTATTCCACTACTGCCTAGGGAGATAGGGCTGGTGGCTTAAATCAGCTTCCTTACTACCTTGG
66 ACCTAATCCACTACTGCCTAGGGAGATAGGACTGGCGGCTTAAATCAGCTTCCCTACTACCTTGG
*
51919159 GAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTATTTAAGGAGACAAGATCTACAATCTT
131 GAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTACTTAAGGAGACAAGATCTACAATCTT
* *
51919224 CAACCTATTCCACTGCTGTCCAGGGAGATAGGACTGTGGCTTAAATCTGCTTCCCTACTACCTTG
196 CAACCTATTCCACTACTGTCCAAGGAGATAGGACTGTGGCTTAAATCTGCTTCCCTACTACCTTG
51919289 GGA
261 GGA
* *
51919292 AGATAAGATTCACCGTCCTT-GATCTGCTCTACTACTGCTTAAGGAGACAGGATGTACAATCTTC
1 AGATAAGATTCACCG-CCTTCGATCTGCTCTACTACTACTTAAGGAGACAGGATCTACAATCTTC
* * * *
51919356 AACCTAATCCACTGCTATCC-AGGGAGATAGGACTGGCGGCTTAAATCTGCTTCCCTACTATCTT
65 AACCTAATCCACTACT-GCCTAGGGAGATAGGACTGGCGGCTTAAATCAGCTTCCCTACTACCTT
* * * *
51919420 GGGAAGATAAGATTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATC
129 GGGAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTACTTAAGGAGACAAGATCTACAATC
51919485 TTCAACCTATTCCACTACTGTCCAAGGAGATAGGACT
194 TTCAACCTATTCCACTACTGTCCAAGGAGATAGGACT
51919522 TACAATCTTC
Statistics
Matches: 207, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
263 201 0.97
264 6 0.03
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (263 bp):
AGATAAGATTCACCGCCTTCGATCTGCTCTACTACTACTTAAGGAGACAGGATCTACAATCTTCA
ACCTAATCCACTACTGCCTAGGGAGATAGGACTGGCGGCTTAAATCAGCTTCCCTACTACCTTGG
GAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTACTTAAGGAGACAAGATCTACAATCTT
CAACCTATTCCACTACTGTCCAAGGAGATAGGACTGTGGCTTAAATCTGCTTCCCTACTACCTTG
GGA
Found at i:51919574 original size:44 final size:44
Alignment explanation
Indices: 51919451--51919576 Score: 155
Period size: 44 Copynumber: 2.9 Consensus size: 44
51919441 TTTGATCTGC
* * *
51919451 TCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTAT
1 TCCACTACTGCCTAGGGAGATAGGATTTACAATCTTCAACCTAT
* *
51919495 TCCACTACTGTCC-AAGGAGATAGGACTTACAATCTTCAACCTAT
1 TCCACTACTG-CCTAGGGAGATAGGATTTACAATCTTCAACCTAT
* * * *
51919539 TCGACTGCTGCCTAGGGAGATAGGATTTGCTATCTTCA
1 TCCACTACTGCCTAGGGAGATAGGATTTACAATCTTCA
51919577 CCGATCTGTT
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
43 2 0.03
44 66 0.96
45 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (44 bp):
TCCACTACTGCCTAGGGAGATAGGATTTACAATCTTCAACCTAT
Found at i:51930390 original size:11 final size:11
Alignment explanation
Indices: 51930374--51930402 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
51930364 CGTAATAACG
51930374 ATAAATAAAAA
1 ATAAATAAAAA
51930385 ATAAAT-AAAA
1 ATAAATAAAAA
51930395 ATAAATAA
1 ATAAATAA
51930403 TACAACACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (11 bp):
ATAAATAAAAA
Done.