Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 194 of 205
Found at i:57464166 original size:23 final size:22
Alignment explanation
Indices: 57464126--57464168 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
57464116 AAATAAAAGA
57464126 AAAAATAACTTATATATTAATT
1 AAAAATAACTTATATATTAATT
* *
57464148 AAAAATTACTATATTTATTAA
1 AAAAATAACT-TATATATTAA
57464169 ATATTTTACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (22 bp):
AAAAATAACTTATATATTAATT
Found at i:57464497 original size:20 final size:20
Alignment explanation
Indices: 57464458--57464497 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
57464448 TGAATTACTT
* **
57464458 ATTACAGCTCTATTTTATTA
1 ATTACAACTCTATTCCATTA
57464478 ATTACAACTCTATTCCATTA
1 ATTACAACTCTATTCCATTA
57464498 CAGCCATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.20, G:0.03, T:0.45
Consensus pattern (20 bp):
ATTACAACTCTATTCCATTA
Found at i:57465959 original size:15 final size:15
Alignment explanation
Indices: 57465941--57465981 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
57465931 AATACTGAGC
57465941 AGAACAAAACAAAAT
1 AGAACAAAACAAAAT
* * *
57465956 AGAACAGAACAGAGT
1 AGAACAAAACAAAAT
57465971 AGAACAAAACA
1 AGAACAAAACA
57465982 TGTATGTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.66, C:0.15, G:0.15, T:0.05
Consensus pattern (15 bp):
AGAACAAAACAAAAT
Found at i:57470233 original size:19 final size:19
Alignment explanation
Indices: 57470196--57470233 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
57470186 CTAATTAAGT
*
57470196 TTTAATTAGATGAATTTAG
1 TTTAATTAGATGAAATTAG
57470215 TTTAATTAAGA-GAAATTAG
1 TTTAATT-AGATGAAATTAG
57470234 GAAAAAAGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (19 bp):
TTTAATTAGATGAAATTAG
Found at i:57470721 original size:14 final size:14
Alignment explanation
Indices: 57470702--57470731 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
57470692 TAATTAAAAC
57470702 AATAAAGTAAATAA
1 AATAAAGTAAATAA
57470716 AATAAAGTAAATAA
1 AATAAAGTAAATAA
57470730 AA
1 AA
57470732 ACAAAAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (14 bp):
AATAAAGTAAATAA
Found at i:57472051 original size:23 final size:23
Alignment explanation
Indices: 57472024--57472131 Score: 73
Period size: 23 Copynumber: 4.9 Consensus size: 23
57472014 CTTGCCGATT
*
57472024 AGGCACTTTATGTGTTGTATATC
1 AGGCACTTTATGTGTCGTATATC
* * *
57472047 AGGCAGTTTATGTGTCGTATTTT
1 AGGCACTTTATGTGTCGTATATC
* **
57472070 AGGCACCTCGTGTGTCG--TATC
1 AGGCACTTTATGTGTCGTATATC
* ** *
57472091 AGGCACCTCGTGTGTCGT-T-TT
1 AGGCACTTTATGTGTCGTATATC
*
57472112 AGGCAC-TTATGTGTCATATA
1 AGGCACTTTATGTGTCGTATA
57472132 CTTATCAGGT
Statistics
Matches: 68, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
20 8 0.12
21 27 0.40
22 1 0.01
23 32 0.47
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.39
Consensus pattern (23 bp):
AGGCACTTTATGTGTCGTATATC
Found at i:57472094 original size:21 final size:21
Alignment explanation
Indices: 57472070--57472117 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
57472060 GTCGTATTTT
57472070 AGGCACCTCGTGTGTCGTATC
1 AGGCACCTCGTGTGTCGTATC
* *
57472091 AGGCACCTCGTGTGTCGTTTT
1 AGGCACCTCGTGTGTCGTATC
57472112 AGGCAC
1 AGGCAC
57472118 TTATGTGTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.15, C:0.27, G:0.29, T:0.29
Consensus pattern (21 bp):
AGGCACCTCGTGTGTCGTATC
Found at i:57473432 original size:28 final size:28
Alignment explanation
Indices: 57473400--57473561 Score: 130
Period size: 28 Copynumber: 5.8 Consensus size: 28
57473390 CGGTCGTGTC
*
57473400 TCCCCTATTTTTCATATTTTATAATTTT
1 TCCCCTATTTTTCAAATTTTATAATTTT
* * *
57473428 TCCCCTATTTTTCAAATTTTACAGTTTAG
1 TCCCCTATTTTTCAAATTTTATAATTT-T
** * *
57473457 TCTACTACTTTAT-AAATTTTATAGTTTT
1 TCCCCTA-TTTTTCAAATTTTATAATTTT
* * *
57473485 ACCCAT-TTTTTCTAGATTTTATAATTTT
1 TCCCCTATTTTTC-AAATTTTATAATTTT
* * * *
57473513 ACCCTTACTTTTCAAATTTTACAATTTT
1 TCCCCTATTTTTCAAATTTTATAATTTT
* *
57473541 TTCCCTATTTTTCAGATTTTA
1 TCCCCTATTTTTCAAATTTTA
57473562 GATGTTACCT
Statistics
Matches: 104, Mismatches: 25, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
26 4 0.04
28 73 0.70
29 23 0.22
30 4 0.04
ACGTcount: A:0.25, C:0.17, G:0.03, T:0.55
Consensus pattern (28 bp):
TCCCCTATTTTTCAAATTTTATAATTTT
Found at i:57480228 original size:24 final size:24
Alignment explanation
Indices: 57480200--57480253 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
57480190 TTTTTAGAAG
* *
57480200 ATTTAATATTAATTAGTATAATAT
1 ATTTAACATTAATTAGCATAATAT
* * *
57480224 ATTTAGCATTTATTAGCATAATTT
1 ATTTAACATTAATTAGCATAATAT
57480248 ATTTAA
1 ATTTAA
57480254 ACTACGAATT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.50
Consensus pattern (24 bp):
ATTTAACATTAATTAGCATAATAT
Found at i:57480950 original size:28 final size:28
Alignment explanation
Indices: 57480900--57480992 Score: 89
Period size: 28 Copynumber: 3.4 Consensus size: 28
57480890 CCTACTTTAC
* *
57480900 AAATTTTATAGA-TTGCCTTTATTTTTT
1 AAATTTTATAAATTTGCCCTTATTTTTT
57480927 AAATTTTATAAATTTGCCCTTATTTTTT
1 AAATTTTATAAATTTGCCCTTATTTTTT
** * ** * *
57480955 AGGTTTTACACTTTTGCCCCTATTTTTC
1 AAATTTTATAAATTTGCCCTTATTTTTT
*
57480983 AGATTTTATA
1 AAATTTTATA
57480993 GTTTTGCCTA
Statistics
Matches: 54, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
27 11 0.20
28 43 0.80
ACGTcount: A:0.25, C:0.13, G:0.08, T:0.55
Consensus pattern (28 bp):
AAATTTTATAAATTTGCCCTTATTTTTT
Found at i:57480997 original size:28 final size:28
Alignment explanation
Indices: 57480882--57481000 Score: 87
Period size: 28 Copynumber: 4.2 Consensus size: 28
57480872 GACATTACAA
* *
57480882 TTTTGTCCCCTACTTTACAAATTTTATAG
1 TTTTG-CCCCTATTTTTCAAATTTTATAG
* ** * *
57480911 -ATTGCCTTTATTTTTTAAATTTTATAA
1 TTTTGCCCCTATTTTTCAAATTTTATAG
* * * ** * *
57480938 ATTTGCCCTTATTTTTTAGGTTTTACAC
1 TTTTGCCCCTATTTTTCAAATTTTATAG
*
57480966 TTTTGCCCCTATTTTTCAGATTTTATAG
1 TTTTGCCCCTATTTTTCAAATTTTATAG
57480994 TTTTGCC
1 TTTTGCC
57481001 TAAGAAATTC
Statistics
Matches: 70, Mismatches: 19, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
27 17 0.24
28 53 0.76
ACGTcount: A:0.21, C:0.17, G:0.08, T:0.54
Consensus pattern (28 bp):
TTTTGCCCCTATTTTTCAAATTTTATAG
Found at i:57483774 original size:90 final size:90
Alignment explanation
Indices: 57483540--57483775 Score: 301
Period size: 90 Copynumber: 2.6 Consensus size: 90
57483530 TTATTTATAC
* * * * *
57483540 ATATGTTGTGCATTCACAATCATCTAACAGTGTATTAACCTGCAACACTGGTGGTTCATCCACCT
1 ATATGTTGTGCATTCACAACCATCTAGCAGCGTATTAACCTGCAACATTGGTGGTTCATCCACCC
**
57483605 ATTTTCTGGCAGCTCTCATCTACAA
66 ACATTCTGGCAGCTCTCATCTACAA
* * * * *
57483630 ATATGTTGTGTATTCACAACCATATGGCAACGTATTAACCTGCAAAATTGGTGGTTCATCCACCC
1 ATATGTTGTGCATTCACAACCATCTAGCAGCGTATTAACCTGCAACATTGGTGGTTCATCCACCC
**
57483695 ACATTCTGGCAGCTCTCATCTGTAA
66 ACATTCTGGCAGCTCTCATCTACAA
* * * * *
57483720 ATATGTTATACATTCACAACCATCTAGCAGCATATTAACCTGCAACTTTTGTGGTT
1 ATATGTTGTGCATTCACAACCATCTAGCAGCGTATTAACCTGCAACATTGGTGGTT
57483776 TATTCACAAC
Statistics
Matches: 122, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
90 122 1.00
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (90 bp):
ATATGTTGTGCATTCACAACCATCTAGCAGCGTATTAACCTGCAACATTGGTGGTTCATCCACCC
ACATTCTGGCAGCTCTCATCTACAA
Found at i:57483894 original size:51 final size:51
Alignment explanation
Indices: 57483825--57483927 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
57483815 GAATTCTTAC
57483825 TATGGTGTGTAGCGATGGGGTAAGATCTTCTTTTATAAACCGAAACTATGT
1 TATGGTGTGTAGCGATGGGGTAAGATCTTCTTTTATAAACCGAAACTATGT
*
57483876 TATGGTGTGTAGCGATGGGGTAGGATCTTCTTTTATAAACCGAAACTATGT
1 TATGGTGTGTAGCGATGGGGTAAGATCTTCTTTTATAAACCGAAACTATGT
57483927 T
1 T
57483928 GCATTCATGA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (51 bp):
TATGGTGTGTAGCGATGGGGTAAGATCTTCTTTTATAAACCGAAACTATGT
Found at i:57484593 original size:22 final size:23
Alignment explanation
Indices: 57484550--57484593 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
57484540 AGCTCTTGGG
*
57484550 TTCTTCTAAAAATAGACTAAATT
1 TTCTTCTAAAAATAAACTAAATT
* *
57484573 TTCTTTTAAAAGTAAAC-AAAT
1 TTCTTCTAAAAATAAACTAAAT
57484594 GTTTTAATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.45, C:0.11, G:0.05, T:0.39
Consensus pattern (23 bp):
TTCTTCTAAAAATAAACTAAATT
Found at i:57485528 original size:28 final size:28
Alignment explanation
Indices: 57485496--57485552 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
57485486 TATTTATGAC
57485496 ATCATTTCTTATATATAAATTAATTTTA
1 ATCATTTCTTATATATAAATTAATTTTA
57485524 ATCATTTCTTATATATAAATTAATTTTA
1 ATCATTTCTTATATATAAATTAATTTTA
57485552 A
1 A
57485553 CTTTAAGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (28 bp):
ATCATTTCTTATATATAAATTAATTTTA
Found at i:57486819 original size:58 final size:58
Alignment explanation
Indices: 57486729--57486842 Score: 192
Period size: 58 Copynumber: 2.0 Consensus size: 58
57486719 AAAAAAACTG
* *
57486729 AAATTATTTGATATTCAAATTGATAGTGATTTGATGATTTGGGCAACCTTAGAATATT
1 AAATTATTTGATATTCAAATTGAGAGTGATTTGATCATTTGGGCAACCTTAGAATATT
* *
57486787 AAATTATTTGATATTCAAATTTAGAGTGATTTGTTCATTTGGGCAACCTTAGAATA
1 AAATTATTTGATATTCAAATTGAGAGTGATTTGATCATTTGGGCAACCTTAGAATA
57486843 ATTTAAAATC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.41
Consensus pattern (58 bp):
AAATTATTTGATATTCAAATTGAGAGTGATTTGATCATTTGGGCAACCTTAGAATATT
Found at i:57487208 original size:29 final size:27
Alignment explanation
Indices: 57487147--57487215 Score: 84
Period size: 29 Copynumber: 2.5 Consensus size: 27
57487137 ATTTTTTTTC
* * *
57487147 TAAAATTTTAAAACTTTATAATTTATT
1 TAAAATATTAAAACTTTATAATCTAGT
57487174 TAAAATTTATTAAAACTTTATAATCTAGT
1 TAAAA--TATTAAAACTTTATAATCTAGT
*
57487203 TCAAATATTAAAA
1 TAAAATATTAAAA
57487216 AAATTAATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
27 13 0.36
29 23 0.64
ACGTcount: A:0.48, C:0.06, G:0.01, T:0.45
Consensus pattern (27 bp):
TAAAATATTAAAACTTTATAATCTAGT
Found at i:57487655 original size:20 final size:20
Alignment explanation
Indices: 57487613--57487654 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
57487603 TTATGAACTA
*
57487613 TTTATATAGTATTTTAAAAT
1 TTTATATAGTATATTAAAAT
57487633 TTTA-ATAGTATATTAAAAT
1 TTTATATAGTATATTAAAAT
57487652 TTT
1 TTT
57487655 TTAAAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (20 bp):
TTTATATAGTATATTAAAAT
Found at i:57498918 original size:109 final size:109
Alignment explanation
Indices: 57498726--57499034 Score: 478
Period size: 109 Copynumber: 2.8 Consensus size: 109
57498716 AAGATATAAG
* * *
57498726 AGGATATTTGGCTATTTGATCCAACGAGAAAAATCGAAACCCAGCACATTGGGGCACGTTTTCTC
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
* *
57498791 GAATTTCCAAACGCAAAACACTGCTTTATTTTGAAAATT-TTAAA
66 GAATTTCCAAACGCAAAACACTGCCTTACTTTG-AAATTATTAAA
*
57498835 AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGACACGTTTTCTC
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
* * *
57498900 GAATTTCCAAACGTAAAACATTGCCTTACTTTGAATTTATTAAA
66 GAATTTCCAAACGCAAAACACTGCCTTACTTTGAAATTATTAAA
* * *
57498944 AGGATATTTGGCTATTTGGTCGAATGAGAAAAATAGAAACCCAACACATTAGGGCACGTTTTCT-
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
*
57499008 GAATTTCCAAACGCAAAACATTGCCTT
66 GAATTTCCAAACGCAAAACACTGCCTT
57499035 TGAAAATTTT
Statistics
Matches: 185, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
108 30 0.16
109 155 0.84
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (109 bp):
AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
GAATTTCCAAACGCAAAACACTGCCTTACTTTGAAATTATTAAA
Found at i:57499097 original size:20 final size:21
Alignment explanation
Indices: 57499065--57499109 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
57499055 GTATGGTGTT
57499065 AATATGCATAATG-AAATAATA
1 AATATGCATAATGTAAATAA-A
57499086 AATATG-ATAATGTAAATAAA
1 AATATGCATAATGTAAATAAA
57499106 AATA
1 AATA
57499110 ATACGAGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.29
Consensus pattern (21 bp):
AATATGCATAATGTAAATAAA
Found at i:57501561 original size:50 final size:49
Alignment explanation
Indices: 57501401--57501983 Score: 310
Period size: 50 Copynumber: 11.7 Consensus size: 49
57501391 TTCAATGTTG
* * *
57501401 GGGAAGTAAGATTCGCCGTCGTAGCTTCAATATATTCCACTACACTGCCT
1 GGGAAGTAAGATTCGCCGTCGTAGCTTCAATCT-TTTCACTGCACTGCCT
* * * * * * * * * *
57501451 AGGAAGTAAGATTTC-CTGTTGTGGCCTCAATCTTTTAATTGCAATGTCG
1 GGGAAGTAAGA-TTCGCCGTCGTAGCTTCAATCTTTTCACTGCACTGCCT
* * * **
57501500 GGGAAGTAAGATTCGTCGTCGTAGCTTCAATCTATTCCGCTGCACCACCT
1 GGGAAGTAAGATTCGCCGTCGTAGCTTCAATCT-TTTCACTGCACTGCCT
* * * * * * * * *
57501550 GGGAAGTAAGATTCGTCGTTGTGGCCTCAATCTTTTAATTGCAATGTCG
1 GGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTTTTCACTGCACTGCCT
** * *
57501599 GGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTTCGCTGCACTGCCT
1 GGGAAGTAAGATTCGCCGTCGTAGCTTCAATCT-TTTCACTGCACTGCCT
* * * * * * * * * *
57501649 GGGAAGTAAGATTTGCCGTTGTGGCCTCAATCTTTTAATTGTAATGTCA
1 GGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTTTTCACTGCACTGCCT
* ** * * *
57501698 GGGAAGCAAGATTCATCGTTGTAGCTTCAATCTGTTCCACTGTACTGCCT
1 GGGAAGTAAGATTCGCCGTCGTAGCTTCAATCT-TTTCACTGCACTGCCT
* * * * * * * * * **
57501748 GGGAAGTAAAATTCACCATTGTGGCTTCAATCTTTTTAATTGTAAT-TTT
1 GGGAAGTAAGATTCGCCGTCGTAGCTTCAATC-TTTTCACTGCACTGCCT
* * * ** *
57501797 GGGGAAGCAAGATTCACCGTCGTAGCTTCAAT-TTGTTCCGCTGCACCACTT
1 -GGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTT-TT-CACTGCACTGCCT
* * * * * * *
57501848 GGGAAGTAAGATTCGCCGTGGTGGCTTCAATCTTTTTAATTACAATG-TT
1 GGGAAGTAAGATTCGCCGTCGTAGCTTCAATC-TTTTCACTGCACTGCCT
* * * * *
57501897 GGGGAAGCAAGATTCGCCGTCGTAGCTTCAATCTATTCCGCTGCACCGTCT
1 -GGGAAGTAAGATTCGCCGTCGTAGCTTCAATCT-TTTCACTGCACTGCCT
* ** *
57501948 GGGAAGTAAGATTCACCGTTATGGCTTCAATCTTTT
1 GGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTTTT
57501984 TAATTGCAAA
Statistics
Matches: 388, Mismatches: 130, Indels: 31
0.71 0.24 0.06
Matches are distributed among these distances:
48 5 0.01
49 109 0.28
50 263 0.68
51 9 0.02
52 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (49 bp):
GGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTTTTCACTGCACTGCCT
Found at i:57501834 original size:100 final size:99
Alignment explanation
Indices: 57501385--57501992 Score: 734
Period size: 99 Copynumber: 6.1 Consensus size: 99
57501375 CTTCTGTCTA
* * * * * * *
57501385 TTTAACTT-CAATGTTGGGGAAGTAAGATTCGCCGTCGTAGCTTCAATATATTCCACTACACTGC
1 TTTAA-TTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTATTCCGCTGCACCGC
* *
57501449 CTAGGAAGTAAGATTTC-CTGTTGTGGCCTCAATCT
65 CTGGGAAGTAAGA-TTCGCCGTTGTGGCCTCAATCT
* ** *
57501484 TTTAATTGCAATGTCGGGGAAGTAAGATTCGTCGTCGTAGCTTCAATCTATTCCGCTGCACCACC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTATTCCGCTGCACCGCC
*
57501549 TGGGAAGTAAGATTCGTCGTTGTGGCCTCAATCT
66 TGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCT
* * * *
57501583 TTTAATTGCAATGTCGGGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTTCGCTGCACTGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTATTCCGCTGCACCGCC
*
57501648 TGGGAAGTAAGATTTGCCGTTGTGGCCTCAATCT
66 TGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCT
* * * * * * * *
57501682 TTTAATTGTAATGTCAGGGAAGCAAGATTCATCGTTGTAGCTTCAATCTGTTCCACTGTACTGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTATTCCGCTGCACCGCC
* * * *
57501747 TGGGAAGTAAAATTCACCATTGTGGCTTCAATCTT
66 TGGGAAGTAAGATTCGCCGTTGTGGCCTCAATC-T
* * * * * * *
57501782 TTTAATTGTAATTTTGGGGAAGCAAGATTCACCGTCGTAGCTTCAATTTGTTCCGCTGCACCACT
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTATTCCGCTGCACCGCC
* *
57501847 TGGGAAGTAAGATTCGCCGTGGTGGCTTCAATCTT
66 TGGGAAGTAAGATTCGCCGTTGTGGCCTCAATC-T
* * * *
57501882 TTTAATTACAATGTTGGGGAAGCAAGATTCGCCGTCGTAGCTTCAATCTATTCCGCTGCACCGTC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTATTCCGCTGCACCGCC
* * *
57501947 TGGGAAGTAAGATTCACCGTTATGGCTTCAATCTT
66 TGGGAAGTAAGATTCGCCGTTGTGGCCTCAATC-T
57501982 TTTAATTGCAA
1 TTTAATTGCAA
57501993 ACTATGGTTT
Statistics
Matches: 445, Mismatches: 61, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
98 5 0.01
99 256 0.58
100 184 0.41
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (99 bp):
TTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTATTCCGCTGCACCGCC
TGGGAAGTAAGATTCGCCGTTGTGGCCTCAATCT
Found at i:57507705 original size:254 final size:254
Alignment explanation
Indices: 57507256--57507764 Score: 921
Period size: 254 Copynumber: 2.0 Consensus size: 254
57507246 ATGTGGGGGA
57507256 AAGTCATAGGTTCCCAATCAACTTCTTCTCCACTCAAACGCGCCTTCCTTCTCTCTTGTCTTTTC
1 AAGTCATAGGTTCCCAATCAACTTCTTCTCCACTCAAACGCGCCTTCCTTCTCTCTTGTCTTTTC
*
57507321 TCTAACTCTTCCCTTCTTTGTCTAGCATTTGGCTTCAATCCTAAACCAAAGTGGTCTTATTTATC
66 TCTAACTCTTCCCTTCTTTGTCTAGCATTTGGCTTCAATCCTAAACCAAAGTAGTCTTATTTATC
*
57507386 TTTCACCATTGGTGCCTCTATCATTCCTTGAAGGTATATTCCAAGTCCTCTTCCAGGCACAGCTC
131 TTTCACCATTGGTGCCTCTATCATTCCTTGAAGGCATATTCCAAGTCCTCTTCCAGGCACAGCTC
* *
57507451 CTTTCCCAACAATCATTTGTAGTCTCATCCTCGTGGCTCTAGATATGCTGGCCATCGGG
196 CTTTCCCAACAATCATTTGTAGTCCCATCCTCGTGGCTCTAGATATGCTGGCCACCGGG
57507510 AAGTCATAGGTTCCCAATCAACTTCTTCTCCACTCAAACGCGCCTT-CTTCCTCTCTTGTCTTTT
1 AAGTCATAGGTTCCCAATCAACTTCTTCTCCACTCAAACGCGCCTTCCTT-CTCTCTTGTCTTTT
* * *
57507574 CTCTAACTCTTTCTTTTTTTGTCTAGCATTTGGCTTCAATCCTAAACCAAAGTAGTCTTATTTAT
65 CTCTAACTCTTCCCTTCTTTGTCTAGCATTTGGCTTCAATCCTAAACCAAAGTAGTCTTATTTAT
* *
57507639 CTTTCACCATTGGTGCCTCTATCCTTCCTTGAAGGCATCTTCCAAGTCCTCTTCCAGGCACAGCT
130 CTTTCACCATTGGTGCCTCTATCATTCCTTGAAGGCATATTCCAAGTCCTCTTCCAGGCACAGCT
57507704 CCTTTCCCAACAATCATTTGTAGTCCCATCCTCGTGGCTCTAGATATGCTGGCCACCGGG
195 CCTTTCCCAACAATCATTTGTAGTCCCATCCTCGTGGCTCTAGATATGCTGGCCACCGGG
57507764 A
1 A
57507765 TCTTCTTTCC
Statistics
Matches: 245, Mismatches: 9, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
253 3 0.01
254 242 0.99
ACGTcount: A:0.20, C:0.31, G:0.14, T:0.36
Consensus pattern (254 bp):
AAGTCATAGGTTCCCAATCAACTTCTTCTCCACTCAAACGCGCCTTCCTTCTCTCTTGTCTTTTC
TCTAACTCTTCCCTTCTTTGTCTAGCATTTGGCTTCAATCCTAAACCAAAGTAGTCTTATTTATC
TTTCACCATTGGTGCCTCTATCATTCCTTGAAGGCATATTCCAAGTCCTCTTCCAGGCACAGCTC
CTTTCCCAACAATCATTTGTAGTCCCATCCTCGTGGCTCTAGATATGCTGGCCACCGGG
Found at i:57514164 original size:109 final size:109
Alignment explanation
Indices: 57513973--57514398 Score: 674
Period size: 109 Copynumber: 3.9 Consensus size: 109
57513963 GATATAAGAA
* * * **
57513973 GATATTTGGCTATTTGATCCAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTTGA
1 GATATTTGGCTATTTGGTCGAATGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCCCGA
*
57514038 ATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATT-TTAAAAG
66 ATTTCCAAACGCAAAACATTGCCTTACTTTG-AAATTATTAAAAG
* ** * * * *
57514082 GATATTTAGCTATTTGGTCGAAAAAGAAAAATCGAAACCCTGCACATTAGGACACGTTTTCTCTA
1 GATATTTGGCTATTTGGTCGAATGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCCCGA
* * *
57514147 ATTTCTAAACGTAAAACATTGCCTTACTTTGAATTTATTAAAAG
66 ATTTCCAAACGCAAAACATTGCCTTACTTTGAAATTATTAAAAG
*
57514191 GATATTTGGCTATTTGGTCGAATGAGAAAAACCGAAACCCAGCACATTAGGGCACGTTTTCCCGA
1 GATATTTGGCTATTTGGTCGAATGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCCCGA
57514256 ATTTCCAAACGCAAAACATTGCCTTACTTTGAAATTATTAAAAG
66 ATTTCCAAACGCAAAACATTGCCTTACTTTGAAATTATTAAAAG
*
57514300 GATATTTGGCTATTTGGTCGAATGAGAAAAATCAAAACCCAGCACATTAGGGCACGTTTTCCCGA
1 GATATTTGGCTATTTGGTCGAATGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCCCGA
57514365 ATTTCCAAACGCAAAACATTGCCTTACTTTGAAA
66 ATTTCCAAACGCAAAACATTGCCTTACTTTGAAA
57514399 ATTTTTCTTT
Statistics
Matches: 290, Mismatches: 26, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
108 4 0.01
109 286 0.99
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (109 bp):
GATATTTGGCTATTTGGTCGAATGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCCCGA
ATTTCCAAACGCAAAACATTGCCTTACTTTGAAATTATTAAAAG
Found at i:57514456 original size:20 final size:21
Alignment explanation
Indices: 57514424--57514468 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
57514414 GTATGGTGTT
57514424 AATATGCATAATG-AAATAATA
1 AATATGCATAATGTAAATAA-A
57514445 AATATG-ATAATGTAAATAAA
1 AATATGCATAATGTAAATAAA
57514465 AATA
1 AATA
57514469 ATACGAGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.29
Consensus pattern (21 bp):
AATATGCATAATGTAAATAAA
Found at i:57514625 original size:18 final size:18
Alignment explanation
Indices: 57514584--57514626 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
57514574 AACACGTAAT
57514584 AAATAAACAACAAATAAGA
1 AAAT-AACAACAAATAAGA
*
57514603 CAATAACAAC-AATAATGA
1 AAATAACAACAAATAA-GA
57514621 AAATAA
1 AAATAA
57514627 ATAAAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 5 0.24
18 13 0.62
19 3 0.14
ACGTcount: A:0.70, C:0.12, G:0.05, T:0.14
Consensus pattern (18 bp):
AAATAACAACAAATAAGA
Found at i:57515809 original size:20 final size:19
Alignment explanation
Indices: 57515784--57515826 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
57515774 TTTTTGTATT
57515784 CAAAAA-AAAAGAAGAAAAAC
1 CAAAAACAAAA-AA-AAAAAC
57515804 CAAAAACTAAAAAAAAAAAC
1 CAAAAAC-AAAAAAAAAAAC
57515824 CAA
1 CAA
57515827 TTTTGATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 15 0.71
21 2 0.10
22 4 0.19
ACGTcount: A:0.79, C:0.14, G:0.05, T:0.02
Consensus pattern (19 bp):
CAAAAACAAAAAAAAAAAC
Found at i:57516829 original size:9 final size:9
Alignment explanation
Indices: 57516810--57516841 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
57516800 TCCTTTTTTT
57516810 AGATATCCCG
1 AGAT-TCCCG
57516820 AGATTCCCG
1 AGATTCCCG
57516829 AGATTCCCG
1 AGATTCCCG
57516838 AGAT
1 AGAT
57516842 ATTTTCAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 18 0.82
10 4 0.18
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (9 bp):
AGATTCCCG
Found at i:57524519 original size:15 final size:15
Alignment explanation
Indices: 57524499--57524528 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
57524489 TACATAAAGA
57524499 GTTTTTTTGGTTTTT
1 GTTTTTTTGGTTTTT
*
57524514 GTTTTTTTTGTTTTT
1 GTTTTTTTGGTTTTT
57524529 AAATATATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (15 bp):
GTTTTTTTGGTTTTT
Found at i:57527570 original size:2 final size:2
Alignment explanation
Indices: 57527565--57527595 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
57527555 TTTCCTCTAT
57527565 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
57527596 TTTGTTCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:57527639 original size:15 final size:16
Alignment explanation
Indices: 57527616--57527648 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
57527606 CATTTTAAAG
57527616 AATTAAAAAAATG-AT
1 AATTAAAAAAATGCAT
*
57527631 AATTTAAAAAATGCAT
1 AATTAAAAAAATGCAT
57527647 AA
1 AA
57527649 AAATTTCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.27
Consensus pattern (16 bp):
AATTAAAAAAATGCAT
Found at i:57529189 original size:33 final size:33
Alignment explanation
Indices: 57529136--57529198 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
57529126 CAAAAGCTAG
57529136 AACCCTTCAGCAGAGCAGATACGATTTCAACGT
1 AACCCTTCAGCAGAGCAGATACGATTTCAACGT
* * *
57529169 AACCTTTCAGCGGAGTAGATACGATTTCAA
1 AACCCTTCAGCAGAGCAGATACGATTTCAA
57529199 TGTTGTTTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (33 bp):
AACCCTTCAGCAGAGCAGATACGATTTCAACGT
Found at i:57532056 original size:13 final size:13
Alignment explanation
Indices: 57532038--57532075 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
57532028 TATATTTTAA
57532038 ATGAAAAATAAAT
1 ATGAAAAATAAAT
57532051 ATGAAAAATAAAT
1 ATGAAAAATAAAT
*
57532064 AAGAAAAATAAA
1 ATGAAAAATAAA
57532076 AAAATAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (13 bp):
ATGAAAAATAAAT
Found at i:57534017 original size:5 final size:5
Alignment explanation
Indices: 57534007--57534031 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
57533997 ACCATAGGTT
57534007 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
57534032 AATTAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:57539169 original size:21 final size:22
Alignment explanation
Indices: 57539143--57539183 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
57539133 ATATTGTCTC
*
57539143 AATTTAG-TCTTAATTTTTAAA
1 AATTTAGCTCTTAATGTTTAAA
57539164 AATTTAGCTCTTAATGTTTA
1 AATTTAGCTCTTAATGTTTA
57539184 CATATTATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.51
Consensus pattern (22 bp):
AATTTAGCTCTTAATGTTTAAA
Found at i:57539289 original size:18 final size:18
Alignment explanation
Indices: 57539252--57539286 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
57539242 TAAATTAGAA
57539252 ATAAAACAAAAATATTTT
1 ATAAAACAAAAATATTTT
*
57539270 ATAAAA-AAATATATTTT
1 ATAAAACAAAAATATTTT
57539287 TATTAAACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAAAACAAAAATATTTT
Found at i:57539932 original size:20 final size:18
Alignment explanation
Indices: 57539893--57539937 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
57539883 TGAAAACAAC
57539893 AAAAAATGATTTTTGAAA
1 AAAAAATGATTTTTGAAA
* *
57539911 AATAAATCGATTTTTTAGAA
1 AAAAAAT-GATTTTTGA-AA
57539931 AAAAAAT
1 AAAAAAT
57539938 TATTATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 6 0.27
19 8 0.36
20 8 0.36
ACGTcount: A:0.56, C:0.02, G:0.09, T:0.33
Consensus pattern (18 bp):
AAAAAATGATTTTTGAAA
Found at i:57539946 original size:20 final size:22
Alignment explanation
Indices: 57539901--57539946 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
57539891 ACAAAAAATG
*
57539901 ATTTTTGAAAAATAAATCGATT
1 ATTTTAGAAAAATAAATCGATT
*
57539923 -TTTTAGAAAAA-AAAT-TATT
1 ATTTTAGAAAAATAAATCGATT
57539942 ATTTT
1 ATTTT
57539947 TCGGTGTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
19 3 0.14
20 8 0.38
21 10 0.48
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.46
Consensus pattern (22 bp):
ATTTTAGAAAAATAAATCGATT
Found at i:57540962 original size:10 final size:10
Alignment explanation
Indices: 57540947--57540975 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
57540937 CACTTTTAGT
57540947 ACTTGGCATG
1 ACTTGGCATG
57540957 ACTTGGCATG
1 ACTTGGCATG
57540967 ACTTGGCAT
1 ACTTGGCAT
57540976 TACACACCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.31
Consensus pattern (10 bp):
ACTTGGCATG
Found at i:57554052 original size:16 final size:18
Alignment explanation
Indices: 57554026--57554058 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
57554016 TCAAATTAAC
57554026 TAAATTAATTTT-TCAAT
1 TAAATTAATTTTCTCAAT
57554043 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
57554059 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:57555771 original size:101 final size:102
Alignment explanation
Indices: 57555650--57555834 Score: 257
Period size: 101 Copynumber: 1.8 Consensus size: 102
57555640 AAAGTGATGG
* ** * *
57555650 TCACGTGTGTAGTACTATGTGTATTCTACTACGTGTACAGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCACGCTACTACATGTACAGG-ATGATAATGGTCACATGTGTAGT
57555713 ACTATGTGCAAGCTACTATGCGTACCGGATAGTTTCGA
65 ACTATGTGCAAGCTACTATGCGTACCGGATAGTTTCGA
** *
57555751 TCACGTGTGTAGTACTATGTGCACGCTACTACATGTATTGGATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCACGCTACTACATGTACAGGATGATAATGGTCACATGTGTAGTA
* *
57555816 CTATGTGTAGGCTACTATG
66 CTATGTGCAAGCTACTATG
57555835 TGAACCAAAC
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
100 4 0.06
101 36 0.50
102 32 0.44
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCACGCTACTACATGTACAGGATGATAATGGTCACATGTGTAGTA
CTATGTGCAAGCTACTATGCGTACCGGATAGTTTCGA
Found at i:57555811 original size:51 final size:50
Alignment explanation
Indices: 57555646--57555832 Score: 169
Period size: 51 Copynumber: 3.7 Consensus size: 50
57555636 AGTGAAAGTG
* * ** *
57555646 ATGGTCACGTGTGTAGTACTATGTGTATTCTACTACGTGTACAGGAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAAGCTACTACGTGTACAGG-ATGGT
* * * * *
57555697 A-GGTCGCATGTGTAGTACTATGTGCAAGCTACTATGCGTACCGGATAGT
1 ATGGTCACATGTGTAGTACTATGTGCAAGCTACTACGTGTACAGGATGGT
* * * * * **
57555746 TTCGATCACGTGTGTAGTACTATGTGCACGCTACTACATGTATTGGATGGT
1 AT-GGTCACATGTGTAGTACTATGTGCAAGCTACTACGTGTACAGGATGGT
* *
57555797 AATGGTCACATGTGTAGTACTATGTGTAGGCTACTA
1 -ATGGTCACATGTGTAGTACTATGTGCAAGCTACTA
57555833 TGTGAACCAA
Statistics
Matches: 107, Mismatches: 26, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
49 3 0.03
50 35 0.33
51 68 0.64
52 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (50 bp):
ATGGTCACATGTGTAGTACTATGTGCAAGCTACTACGTGTACAGGATGGT
Found at i:57555894 original size:45 final size:45
Alignment explanation
Indices: 57555843--57555929 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
57555833 TGTGAACCAA
* * *
57555843 ACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCGG
1 ACATCATTGATTAATAAGGTGGTTGATATGTGCTGAATCCACCGG
57555888 ACATCATTGATTAATAAGGTGGTTGATATGTGCTGAATCCAC
1 ACATCATTGATTAATAAGGTGGTTGATATGTGCTGAATCCAC
57555930 TGAGTATCTG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.33
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGATATGTGCTGAATCCACCGG
Found at i:57561215 original size:59 final size:58
Alignment explanation
Indices: 57561120--57561258 Score: 201
Period size: 59 Copynumber: 2.4 Consensus size: 58
57561110 AAGATACGTA
57561120 GTGTAAGACCATGGATGAAAGACGCCATGACAGCATGGTACAAGGTAAAACGGTATATAG
1 GTGTAAGACCATGGATGAAAGACGCCATGACAGCATGGTACAAGGTAAAA-GGTATAT-G
* * *
57561180 G-GTAAGACCATGGATAAAAGACGCCATGGA-GGCATGGTACAAGGTATAAGGTATATG
1 GTGTAAGACCATGGATGAAAGACGCCAT-GACAGCATGGTACAAGGTAAAAGGTATATG
*
57561237 GTGTAAGACCATAGATGAAAGA
1 GTGTAAGACCATGGATGAAAGA
57561259 TGTTATGACA
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
57 2 0.03
58 25 0.35
59 42 0.58
60 3 0.04
ACGTcount: A:0.39, C:0.13, G:0.29, T:0.19
Consensus pattern (58 bp):
GTGTAAGACCATGGATGAAAGACGCCATGACAGCATGGTACAAGGTAAAAGGTATATG
Found at i:57561504 original size:33 final size:33
Alignment explanation
Indices: 57561399--57561505 Score: 85
Period size: 33 Copynumber: 3.2 Consensus size: 33
57561389 CCACTGCGAC
* * * ** *
57561399 AGTAAACATAGAACAAAGATAGTCCGTTGTGAC
1 AGTAAACATAAAACAGAGATAGTCAGTTAAGAT
* *
57561432 AGTAAACATATAAGA-AG-GATAGTCCA-CTAGGAT
1 AGTAAACATA-AA-ACAGAGATAGT-CAGTTAAGAT
*
57561465 AATAAACATAAAACAGAGATAGTCAGTTAAGAT
1 AGTAAACATAAAACAGAGATAGTCAGTTAAGAT
57561498 AGTAAACA
1 AGTAAACA
57561506 CAGATGAAGT
Statistics
Matches: 57, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
31 1 0.02
32 6 0.11
33 46 0.81
34 3 0.05
35 1 0.02
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.21
Consensus pattern (33 bp):
AGTAAACATAAAACAGAGATAGTCAGTTAAGAT
Found at i:57567134 original size:16 final size:16
Alignment explanation
Indices: 57567113--57567144 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
57567103 AATTGGGTTG
*
57567113 AGAAAATTATTTAATT
1 AGAAAATTAATTAATT
57567129 AGAAAATTAATTAATT
1 AGAAAATTAATTAATT
57567145 TAAATTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (16 bp):
AGAAAATTAATTAATT
Found at i:57568859 original size:49 final size:47
Alignment explanation
Indices: 57568769--57568869 Score: 118
Period size: 49 Copynumber: 2.1 Consensus size: 47
57568759 AGCTCTTATA
*
57568769 AACTTCCCGATATATGGCTCTCCGTGAGCTTTTTGATATGGCTCGCTTG
1 AACTTCCCGATATATGGCTATCCGTGAGCTTTTTGATATGGCT--CTTG
*
57568818 AACTTTCCGATATATGGCTATCCG-GAGCTTTCCATT-A-ATGGCTCTTG
1 AACTTCCCGATATATGGCTATCCGTGAGCTTT---TTGATATGGCTCTTG
57568865 AACTT
1 AACTT
57568870 ACCTAAAATG
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
47 9 0.19
48 7 0.15
49 28 0.60
50 1 0.02
51 2 0.04
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.37
Consensus pattern (47 bp):
AACTTCCCGATATATGGCTATCCGTGAGCTTTTTGATATGGCTCTTG
Found at i:57571501 original size:16 final size:16
Alignment explanation
Indices: 57571466--57571515 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
57571456 TTTTGAATAG
* *
57571466 AGTTATTCATGAAGAAT
1 AGTTATTC-TAAATAAT
57571483 AGTTATTCTAAATAAT
1 AGTTATTCTAAATAAT
* *
57571499 AGTTGTTCCAAATAAT
1 AGTTATTCTAAATAAT
57571515 A
1 A
57571516 ATCATTTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
16 21 0.72
17 8 0.28
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (16 bp):
AGTTATTCTAAATAAT
Found at i:57571662 original size:3 final size:3
Alignment explanation
Indices: 57571654--57571696 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
57571644 AATTATCCTA
57571654 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
57571697 ATGTCTTGAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:57571898 original size:5 final size:5
Alignment explanation
Indices: 57571888--57571919 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
57571878 GGAGAGGTAC
57571888 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT AT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT AT
57571920 GTAAATTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:57571972 original size:13 final size:13
Alignment explanation
Indices: 57571939--57571970 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
57571929 ACTGTTTTAG
57571939 TTTT-AAATTATT
1 TTTTAAAATTATT
57571951 TTTTAAAATT-TT
1 TTTTAAAATTATT
57571963 TTTTAAAA
1 TTTTAAAA
57571971 ATATCTAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTTAAAATTATT
Found at i:57581510 original size:5 final size:5
Alignment explanation
Indices: 57581502--57581533 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
57581492 TATTTTTTTC
*
57581502 ATTCG ATTCG ATTCG ATTCG ATTCA ATTCG AT
1 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG AT
57581534 CAAACACTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.41
Consensus pattern (5 bp):
ATTCG
Found at i:57593874 original size:27 final size:27
Alignment explanation
Indices: 57593844--57594021 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
57593834 ATATTGAGTC
* * * *
57593844 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
57593871 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
57593898 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
57593926 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
57593953 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
57593980 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
57594007 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57594022 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:57593983 original size:82 final size:81
Alignment explanation
Indices: 57593865--57594020 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
57593855 TGCTATATAA
* *
57593865 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
57593930 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
57593947 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
57594011 CACTTAGTGC
65 CACTTAGTGC
57594021 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:57606824 original size:13 final size:13
Alignment explanation
Indices: 57606806--57606832 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
57606796 CCAAACTGCA
57606806 ATTCACATATAAT
1 ATTCACATATAAT
57606819 ATTCACATATAAT
1 ATTCACATATAAT
57606832 A
1 A
57606833 CGACTCTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTCACATATAAT
Found at i:57611998 original size:95 final size:95
Alignment explanation
Indices: 57611743--57612082 Score: 351
Period size: 95 Copynumber: 3.6 Consensus size: 95
57611733 GGTGATTAGA
* * *
57611743 AAATCAGCTAACACAGATGAGATTGTTCATGATAG-TAAATCAAATG-ACTTAGGCTGCGATCTT
1 AAATCAGCTAACTCAGATAAGATTGTTCATGAT-GTTAAATAAAATGAACTTAGGCTGCGATCTT
* * * *
57611806 AAATCAGCAAGCCATTTGAAGCAGCAATGTT
65 AAATCAGCAAGCCGTTTGGAGTAGCGATGTT
* * * * * **
57611837 AAATTAGTTAACTCAGATAAGTTTGTTCATGATGTTAAATAGAATTAACTTAGGCCACGATCTTA
1 AAATCAGCTAACTCAGATAAGATTGTTCATGATGTTAAATAAAATGAACTTAGGCTGCGATCTTA
*** *
57611902 AATCAATGAGCCGTTTGGAGTAGTGATGTT
66 AATCAGCAAGCCGTTTGGAGTAGCGATGTT
* * * *
57611932 AAATCAGCTAACTCAGATAAGATTGCTCATGATGTTAAATAAAATGAACTTAGGTTGTGATATTA
1 AAATCAGCTAACTCAGATAAGATTGTTCATGATGTTAAATAAAATGAACTTAGGCTGCGATCTTA
* * * * *
57611997 AATTAGCAAGTCGTTTCGAGTACCGATTTT
66 AATCAGCAAGCCGTTTGGAGTAGCGATGTT
* * * * * * *
57612027 AAATCAGCAAACTCGGATAAAATTGTTCATGATGTTGAATAGAACGAACATAGGCT
1 AAATCAGCTAACTCAGATAAGATTGTTCATGATGTTAAATAAAATGAACTTAGGCT
57612083 ATAATCTTAA
Statistics
Matches: 197, Mismatches: 47, Indels: 3
0.80 0.19 0.01
Matches are distributed among these distances:
93 1 0.01
94 36 0.18
95 160 0.81
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (95 bp):
AAATCAGCTAACTCAGATAAGATTGTTCATGATGTTAAATAAAATGAACTTAGGCTGCGATCTTA
AATCAGCAAGCCGTTTGGAGTAGCGATGTT
Found at i:57612092 original size:190 final size:189
Alignment explanation
Indices: 57611743--57612094 Score: 420
Period size: 190 Copynumber: 1.9 Consensus size: 189
57611733 GGTGATTAGA
* * * *
57611743 AAATCAGCTAACACAGATGAGATTGTTCATGATAGTAAATCAAATGACTTAGGCTGCGATCTTAA
1 AAATCAGCTAACACAGATAAGATTGCTCATGATAGTAAATAAAATGACTTAGGCTGCGATATTAA
* * ** **
57611808 ATCAGCAAGCCATTTGAAGCAGCAATGTTAAATTAGTTAACTCAGATAAGTTTGTTCATGATGTT
66 ATCAGCAAGCCATTTGAAGCACCAATGTTAAATCAGCAAACTCAGATAAAATTGTTCATGATGTT
** * *
57611873 AAATAGAATTAACTTAGGCCACGATCTTAAATCAATGAGCCGTTTGGAGTAGTGATGTT
131 AAATAGAACGAACATAGGCCACAATCTTAAATCAATGAGCCGTTTGGAGTAGTGATGTT
* * *
57611932 AAATCAGCTAACTCAGATAAGATTGCTCATGAT-GTTAAATAAAATGAACTTAGGTTGTGATATT
1 AAATCAGCTAACACAGATAAGATTGCTCATGATAG-TAAATAAAATG-ACTTAGGCTGCGATATT
* * * * * * *
57611996 AAATTAGCAAGTCGTTTCG-AGTACCGATTTTAAATCAGCAAACTCGGATAAAATTGTTCATGAT
64 AAATCAGCAAGCCATTT-GAAGCACCAATGTTAAATCAGCAAACTCAGATAAAATTGTTCATGAT
* * *
57612060 GTTGAATAGAACGAACATAGGCTATAATCTTAAAT
128 GTTAAATAGAACGAACATAGGCCACAATCTTAAAT
57612095 TAGCGAGCCT
Statistics
Matches: 133, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
188 1 0.01
189 40 0.30
190 91 0.68
191 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (189 bp):
AAATCAGCTAACACAGATAAGATTGCTCATGATAGTAAATAAAATGACTTAGGCTGCGATATTAA
ATCAGCAAGCCATTTGAAGCACCAATGTTAAATCAGCAAACTCAGATAAAATTGTTCATGATGTT
AAATAGAACGAACATAGGCCACAATCTTAAATCAATGAGCCGTTTGGAGTAGTGATGTT
Found at i:57612280 original size:130 final size:131
Alignment explanation
Indices: 57612026--57612362 Score: 408
Period size: 130 Copynumber: 2.6 Consensus size: 131
57612016 GTACCGATTT
* * * * * * * * *
57612026 TAAATCAGCAAACTCGGATAAAATTGTTCATGATGTTGAAT-AGAACGAACATAGGCTATAATCT
1 TAAATCAACTAACTCAGAAAAAATTGTTCATAATATTAAATCA-AATGAACATAGGCTACAATCT
* * *
57612090 TAAATTAGCGAGCCTTAACGATATCAGCTGCGATCTTACATCAGCGAGCTATTTAGATTAGCAAT
65 TAAATTAACGAGCCTTAACGATATCAGCTGCGATCTTAAATCAACGAGCTATTTAGATTAGCAAT
57612155 AG
130 AG
* * * *
57612157 TAAATCAACTAACTCAG-AACAATTGTTCATAATATTAAATTAAATGAACTTAGGCTACGATCTT
1 TAAATCAACTAACTCAGAAAAAATTGTTCATAATATTAAATCAAATGAACATAGGCTACAATCTT
* * * * * *
57612221 AAGTTAACGAGCCTTAACGATATCAGTTGCGATCTTAAATCAATGAGCTGTTTATATTAGCGATA
66 AAATTAACGAGCCTTAACGATATCAGCTGCGATCTTAAATCAACGAGCTATTTAGATTAGCAATA
57612286 G
131 G
* * * *
57612287 TAAATCAACTAACTCAGAAAAAATTGTTCATGATATTAAATCAAATGAACCTAAGCTGCAATCTT
1 TAAATCAACTAACTCAGAAAAAATTGTTCATAATATTAAATCAAATGAACATAGGCTACAATCTT
*
57612352 AAATCAACGAG
66 AAATTAACGAG
57612363 TTGTTTAGAG
Statistics
Matches: 174, Mismatches: 30, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
130 110 0.63
131 64 0.37
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.29
Consensus pattern (131 bp):
TAAATCAACTAACTCAGAAAAAATTGTTCATAATATTAAATCAAATGAACATAGGCTACAATCTT
AAATTAACGAGCCTTAACGATATCAGCTGCGATCTTAAATCAACGAGCTATTTAGATTAGCAATA
G
Found at i:57616749 original size:11 final size:11
Alignment explanation
Indices: 57616733--57616767 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
57616723 ATTGTGTTAC
57616733 AATAAAATAAA
1 AATAAAATAAA
57616744 AATAAAATAAA
1 AATAAAATAAA
57616755 AATAAAATGAAA
1 AATAAAAT-AAA
57616767 A
1 A
57616768 CAAATAGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:57619317 original size:19 final size:18
Alignment explanation
Indices: 57619285--57619331 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 18
57619275 GTGACCCCTG
*
57619285 TTTTCAAAATTTTTAGAT
1 TTTTCAAAACTTTTAGAT
57619303 TTTTCTAAAACTTTTAGAT
1 TTTTC-AAAACTTTTAGAT
57619322 CTATTTCAAA
1 -T-TTTCAAA
57619332 TTAGTCCCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 5 0.20
19 12 0.48
20 4 0.16
21 4 0.16
ACGTcount: A:0.34, C:0.11, G:0.04, T:0.51
Consensus pattern (18 bp):
TTTTCAAAACTTTTAGAT
Found at i:57642923 original size:13 final size:14
Alignment explanation
Indices: 57642904--57642941 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
57642894 CGATGGCATA
57642904 GAAATAATATAAAC
1 GAAATAATATAAAC
57642918 -AAATAA-ATAAAC
1 GAAATAATATAAAC
57642930 GAAACTAATATA
1 GAAA-TAATATA
57642942 CATAAGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 3 0.14
15 3 0.14
ACGTcount: A:0.66, C:0.08, G:0.05, T:0.21
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:57643074 original size:22 final size:23
Alignment explanation
Indices: 57643035--57643080 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
57643025 TAAACAAATG
*
57643035 AAAGAAATAAACAAAAAA-ATAT
1 AAAGAAAAAAACAAAAAATATAT
* *
57643057 AAAGAAAAAAATACAAAATATAT
1 AAAGAAAAAAACAAAAAATATAT
57643080 A
1 A
57643081 TATTGAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.15
Consensus pattern (23 bp):
AAAGAAAAAAACAAAAAATATAT
Found at i:57644903 original size:13 final size:14
Alignment explanation
Indices: 57644884--57644921 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
57644874 CGATGGCATA
57644884 GAAATAATATAAAC
1 GAAATAATATAAAC
57644898 -AAATAA-ATAAAC
1 GAAATAATATAAAC
57644910 GAAACTAATATA
1 GAAA-TAATATA
57644922 CAAAAGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 3 0.14
15 3 0.14
ACGTcount: A:0.66, C:0.08, G:0.05, T:0.21
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:57645054 original size:22 final size:23
Alignment explanation
Indices: 57645015--57645060 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
57645005 TAAACAAATG
*
57645015 AAAGAAATAAACAAAAAA-ATAT
1 AAAGAAAAAAACAAAAAATATAT
* *
57645037 AAAGAAAAAAATACAAAATATAT
1 AAAGAAAAAAACAAAAAATATAT
57645060 A
1 A
57645061 TATTGAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.15
Consensus pattern (23 bp):
AAAGAAAAAAACAAAAAATATAT
Found at i:57645499 original size:22 final size:23
Alignment explanation
Indices: 57645460--57645505 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
57645450 TAAACAAATG
*
57645460 AAAGAAATAAACAAAAAA-ATAT
1 AAAGAAAAAAACAAAAAATATAT
* *
57645482 AAAGAAAAAAATACAAAATATAT
1 AAAGAAAAAAACAAAAAATATAT
57645505 A
1 A
57645506 TATTGAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.15
Consensus pattern (23 bp):
AAAGAAAAAAACAAAAAATATAT
Found at i:57645765 original size:445 final size:445
Alignment explanation
Indices: 57644936--57645824 Score: 1778
Period size: 445 Copynumber: 2.0 Consensus size: 445
57644926 AGAAAAAAAA
57644936 AATCAATAACATGCAAAGTATCAAATAAATGAGCAAGATAAAAAAAATATAAATGAAAACACAAA
1 AATCAATAACATGCAAAGTATCAAATAAATGAGCAAGATAAAAAAAATATAAATGAAAACACAAA
57645001 TTAATAAACAAATGAAAGAAATAAACAAAAAAATATAAAGAAAAAAATACAAAATATATATATTG
66 TTAATAAACAAATGAAAGAAATAAACAAAAAAATATAAAGAAAAAAATACAAAATATATATATTG
57645066 AAATTATGAAGAATAAAAGACGTAAACATAACTTACACATAAAATTTTGGGTTATAAAACTTATA
131 AAATTATGAAGAATAAAAGACGTAAACATAACTTACACATAAAATTTTGGGTTATAAAACTTATA
57645131 TATATAAAATACATAATGCATTTATGAAAACAAAGAAAAAAATATAAATATATACATATATACAT
196 TATATAAAATACATAATGCATTTATGAAAACAAAGAAAAAAATATAAATATATACATATATACAT
57645196 AAATTATAAAATATGTGTTAAAATATAAGTAGGTAGTTAAACATTTTCGAAAAAAAAACATAGAT
261 AAATTATAAAATATGTGTTAAAATATAAGTAGGTAGTTAAACATTTTCGAAAAAAAAACATAGAT
57645261 ATATATGTATACATATATAAATATAATAGAATATTCATTAGAAAAAATAAATAAATATGTATATA
326 ATATATGTATACATATATAAATATAATAGAATATTCATTAGAAAAAATAAATAAATATGTATATA
57645326 TGTACATATAAAATATATTAAAAATGATTAAATAATATCTACATTATCAAAATTG
391 TGTACATATAAAATATATTAAAAATGATTAAATAATATCTACATTATCAAAATTG
57645381 AATCAATAACATGCAAAGTATCAAATAAATGAGCAAGATAAAAAAAATATAAATGAAAACACAAA
1 AATCAATAACATGCAAAGTATCAAATAAATGAGCAAGATAAAAAAAATATAAATGAAAACACAAA
57645446 TTAATAAACAAATGAAAGAAATAAACAAAAAAATATAAAGAAAAAAATACAAAATATATATATTG
66 TTAATAAACAAATGAAAGAAATAAACAAAAAAATATAAAGAAAAAAATACAAAATATATATATTG
57645511 AAATTATGAAGAATAAAAGACGTAAACATAACTTACACATAAAATTTTGGGTTATAAAACTTATA
131 AAATTATGAAGAATAAAAGACGTAAACATAACTTACACATAAAATTTTGGGTTATAAAACTTATA
57645576 TATATAAAATACATAATGCATTTATGAAAACAAAGAAAAAAATATAAATATATACATATATACAT
196 TATATAAAATACATAATGCATTTATGAAAACAAAGAAAAAAATATAAATATATACATATATACAT
57645641 AAATTATAAAATATGTGTTAAAATATAAGTAGGTAGTTAAACATTTTCGAAAAAAAAACATAGAT
261 AAATTATAAAATATGTGTTAAAATATAAGTAGGTAGTTAAACATTTTCGAAAAAAAAACATAGAT
57645706 ATATATGTATACATATATAAATATAATAGAATATTCATTAGAAAAAATAAATAAATATGTATATA
326 ATATATGTATACATATATAAATATAATAGAATATTCATTAGAAAAAATAAATAAATATGTATATA
57645771 TGTACATATAAAATATATTAAAAATGATTAAATAATATCTACATTATCAAAATT
391 TGTACATATAAAATATATTAAAAATGATTAAATAATATCTACATTATCAAAATT
57645825 AATTAATTTT
Statistics
Matches: 444, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
445 444 1.00
ACGTcount: A:0.57, C:0.07, G:0.08, T:0.28
Consensus pattern (445 bp):
AATCAATAACATGCAAAGTATCAAATAAATGAGCAAGATAAAAAAAATATAAATGAAAACACAAA
TTAATAAACAAATGAAAGAAATAAACAAAAAAATATAAAGAAAAAAATACAAAATATATATATTG
AAATTATGAAGAATAAAAGACGTAAACATAACTTACACATAAAATTTTGGGTTATAAAACTTATA
TATATAAAATACATAATGCATTTATGAAAACAAAGAAAAAAATATAAATATATACATATATACAT
AAATTATAAAATATGTGTTAAAATATAAGTAGGTAGTTAAACATTTTCGAAAAAAAAACATAGAT
ATATATGTATACATATATAAATATAATAGAATATTCATTAGAAAAAATAAATAAATATGTATATA
TGTACATATAAAATATATTAAAAATGATTAAATAATATCTACATTATCAAAATTG
Found at i:57646106 original size:14 final size:14
Alignment explanation
Indices: 57646087--57646121 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
57646077 AAATAAAATT
57646087 TAATAAACAATAAA
1 TAATAAACAATAAA
57646101 TAATAAACAATAAA
1 TAATAAACAATAAA
57646115 TAATAAA
1 TAATAAA
57646122 TAAAAAAGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (14 bp):
TAATAAACAATAAA
Found at i:57646122 original size:7 final size:7
Alignment explanation
Indices: 57646037--57646124 Score: 63
Period size: 7 Copynumber: 12.1 Consensus size: 7
57646027 TAAAATATAC
57646037 ATAAATGA
1 ATAAAT-A
*
57646045 ATATATA
1 ATAAATA
57646052 ATAACAATA
1 AT-A-AATA
**
57646061 ATACTTA
1 ATAAATA
57646068 ATAAA-A
1 ATAAATA
57646074 ATAAAATA
1 AT-AAATA
*
57646082 A-AATTTA
1 ATAA-ATA
*
57646089 ATAAACA
1 ATAAATA
57646096 ATAAATA
1 ATAAATA
*
57646103 ATAAACA
1 ATAAATA
57646110 ATAAATA
1 ATAAATA
57646117 ATAAATA
1 ATAAATA
57646124 A
1 A
57646125 AAAAGACTAA
Statistics
Matches: 62, Mismatches: 12, Indels: 13
0.71 0.14 0.15
Matches are distributed among these distances:
6 5 0.08
7 41 0.66
8 11 0.18
9 5 0.08
ACGTcount: A:0.67, C:0.05, G:0.01, T:0.27
Consensus pattern (7 bp):
ATAAATA
Found at i:57649388 original size:57 final size:57
Alignment explanation
Indices: 57649248--57649357 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 57
57649238 TAAATTCATG
* * * * *
57649248 GATAGAATATGGAGTTGAGATGAGTTATGTATATTTGATATAAATTTATGGATAGAC
1 GATAGAATATGAAATTGATATGAGTTATGTATATTTGATATAAATTCATAGATAGAC
*
57649305 GATAGAATATGAAATTGATATGAGTTATGTGTATTTGATATAAATTCATAGAT
1 GATAGAATATGAAATTGATATGAGTTATGTATATTTGATATAAATTCATAGAT
57649358 TGATGATAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 47 1.00
ACGTcount: A:0.38, C:0.02, G:0.22, T:0.38
Consensus pattern (57 bp):
GATAGAATATGAAATTGATATGAGTTATGTATATTTGATATAAATTCATAGATAGAC
Found at i:57651782 original size:25 final size:25
Alignment explanation
Indices: 57651753--57651808 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
57651743 ATGGAAAGTA
57651753 TGAATTCAATGGCATTATGTTAATG
1 TGAATTCAATGGCATTATGTTAATG
57651778 TGAATTCAATGGCATTATGTTAATG
1 TGAATTCAATGGCATTATGTTAATG
57651803 TGAATT
1 TGAATT
57651809 TACCTTATCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (25 bp):
TGAATTCAATGGCATTATGTTAATG
Found at i:57659008 original size:16 final size:17
Alignment explanation
Indices: 57658987--57659024 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
57658977 TTCTATAGGG
*
57658987 ATTTTACT-TTTATTTT
1 ATTTTACTATGTATTTT
57659003 ATTTTACTACTGTATTTT
1 ATTTTACTA-TGTATTTT
57659021 ATTT
1 ATTT
57659025 AAATAATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
18 11 0.58
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTTACTATGTATTTT
Found at i:57663199 original size:21 final size:23
Alignment explanation
Indices: 57663163--57663207 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 23
57663153 TAAAAAAATT
57663163 TAAAATTATTAAAATTTT-AATA
1 TAAAATTATTAAAATTTTCAATA
*
57663185 TAAAA-TATTATAATTTTCAATA
1 TAAAATTATTAAAATTTTCAATA
57663207 T
1 T
57663208 TATTAAACGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (23 bp):
TAAAATTATTAAAATTTTCAATA
Found at i:57663292 original size:13 final size:13
Alignment explanation
Indices: 57663274--57663299 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
57663264 TTTCATTTTT
57663274 ATTTTAATAATAA
1 ATTTTAATAATAA
57663287 ATTTTAATAATAA
1 ATTTTAATAATAA
57663300 TACTCTTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTTTAATAATAA
Found at i:57666210 original size:2 final size:2
Alignment explanation
Indices: 57666203--57666318 Score: 81
Period size: 2 Copynumber: 57.5 Consensus size: 2
57666193 CAATATGAGC
* *
57666203 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG GG GG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * * * * * * *
57666245 GG GG AC A- ATG AC AG GG AC AG GG AG GG AG AG AG AG GG GG AG AG
1 AG AG AG AG A-G AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* *
57666287 AG GG AG AG AG GG AG AG AG AG AG AG AG ATG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A-G AG A
57666319 ATAAGAAGGA
Statistics
Matches: 92, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
1 1 0.01
2 88 0.96
3 3 0.03
ACGTcount: A:0.41, C:0.03, G:0.55, T:0.02
Consensus pattern (2 bp):
AG
Found at i:57668227 original size:21 final size:23
Alignment explanation
Indices: 57668203--57668254 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 23
57668193 TTCTATTAAG
57668203 TTTTTCTGTCTT-TTGACACGCTT
1 TTTTTCTGTCTTGTTGACACGC-T
57668226 TTTCTTCTGTCTTGTTGACACGCT
1 TTT-TTCTGTCTTGTTGACACGCT
*
57668250 CTTTT
1 TTTTT
57668255 GGTTTTTCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 5 0.19
24 12 0.46
25 9 0.35
ACGTcount: A:0.08, C:0.23, G:0.13, T:0.56
Consensus pattern (23 bp):
TTTTTCTGTCTTGTTGACACGCT
Found at i:57668237 original size:24 final size:26
Alignment explanation
Indices: 57668206--57668254 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
57668196 TATTAAGTTT
57668206 TTCTGTCTT-TTGACACGCT-TTTTC
1 TTCTGTCTTGTTGACACGCTCTTTTC
57668230 TTCTGTCTTGTTGACACGCTCTTTT
1 TTCTGTCTTGTTGACACGCTCTTTT
57668255 GGTTTTTCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 9 0.39
25 10 0.43
26 4 0.17
ACGTcount: A:0.08, C:0.24, G:0.14, T:0.53
Consensus pattern (26 bp):
TTCTGTCTTGTTGACACGCTCTTTTC
Found at i:57688357 original size:112 final size:112
Alignment explanation
Indices: 57688160--57688376 Score: 371
Period size: 112 Copynumber: 1.9 Consensus size: 112
57688150 TTAACATCCC
* *
57688160 GGTGATAGAAAAAGGCAATATTCGTTCGTTGATCGCTGCAGAGGTGTTACTATTTTGATCATAAT
1 GGTGATAGAAAAAAGCAATATTCGTTCGTTGATCGCTGCAGAGGTGTTACTACTTTGATCATAAT
* *
57688225 GTTGTTATATCTTGGAAGACATTCGACCAACGTTTCTTCAGCAATAA
66 GCTGTTATATCCTGGAAGACATTCGACCAACGTTTCTTCAGCAATAA
* *
57688272 GGTGATAGAAAAAAGCAATGTTCGTTCGTTGATCGCTGCAGAGGTGTTACTACTTTGATCATAGT
1 GGTGATAGAAAAAAGCAATATTCGTTCGTTGATCGCTGCAGAGGTGTTACTACTTTGATCATAAT
*
57688337 GCTGTTATATCCTGGGAGACATTCGACCAACGTTTCTTCA
66 GCTGTTATATCCTGGAAGACATTCGACCAACGTTTCTTCA
57688377 ACCGTAAGAG
Statistics
Matches: 98, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
112 98 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.33
Consensus pattern (112 bp):
GGTGATAGAAAAAAGCAATATTCGTTCGTTGATCGCTGCAGAGGTGTTACTACTTTGATCATAAT
GCTGTTATATCCTGGAAGACATTCGACCAACGTTTCTTCAGCAATAA
Found at i:57688896 original size:88 final size:86
Alignment explanation
Indices: 57688680--57689164 Score: 382
Period size: 87 Copynumber: 5.6 Consensus size: 86
57688670 AAAAAAATTG
* * * * *
57688680 AAAA-TAAATAAAATTTGTTTCGGGATTAATTCCCGCCATTCAACTGATTTTATTCTTTATTTTG
1 AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACAGATTTTATTC--CATTTTG
*
57688744 -TTTTTATTTCCAAACA-A-ATATT
64 ATTTTT-TTT-CAAAAATAGATATT
* * ** * *
57688766 AAAATTAAAAAAAATATGTTTCAAGATTTATTCCCGCTGTTCAACGGATTTTATTCCAATTTTGA
1 AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACAGATTTTATTCC-ATTTTGA
*
57688831 TTTTTTTTTAAAAAT-GATTATT
65 TTTTTTTTCAAAAATAGA-TATT
* * * * *
57688853 AAAATTAAAATAAAATCTGTTTCGAGATTTATTCCCGCCGTTCAACGGATTTCATTACATTCTGA
1 AAAATT-AAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACAGATTTTATTCCATTTTGA
* *
57688918 TTTTTTTGCAAAAACTAGAAATT
65 TTTTTTTTCAAAAA-TAGATATT
* * ** * *
57688941 CAAATTAAATAAAATCTATTTCGGGATTTATTCCTACCGTTTAACAAGATTTTATTCGA-TTTGA
1 AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAAC-AGATTTTATTCCATTTTGA
* * * *
57689005 TGTTGTTTCCAAATTAGA-ATT
65 TTTTTTTTCAAAAATAGATATT
* * * * * *
57689026 AAAATTAAATAAAATCTATTTCGGGATTTATTCTCGCAGTTTAACAAGATTTTATTCGATATTG-
1 AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAAC-AGATTTTATTCCATTTTGA
* *
57689090 TTTTGTTTCCAAACAA-AGA-CTT
65 TTTT-TTTTCAAA-AATAGATATT
* * * * * *
57689112 --AATCAAATAAAATCTGTTTTGGGATTTATTCCCGTCATTTAACATATTTTATT
1 AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACAGATTTTATT
57689165 AAATCCCGAA
Statistics
Matches: 329, Mismatches: 57, Indels: 29
0.79 0.14 0.07
Matches are distributed among these distances:
83 9 0.03
84 36 0.11
85 64 0.19
86 31 0.09
87 124 0.38
88 63 0.19
89 2 0.01
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.42
Consensus pattern (86 bp):
AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACAGATTTTATTCCATTTTGAT
TTTTTTTCAAAAATAGATATT
Found at i:57689046 original size:85 final size:83
Alignment explanation
Indices: 57688850--57689143 Score: 292
Period size: 85 Copynumber: 3.4 Consensus size: 83
57688840 AAAAATGATT
* * * * * *
57688850 ATTAAAATTAAAATAAAATCTGTTTCGAGATTTATTCCCGCCGTTCAAC-GGATTTCATTAC-AT
1 ATTAAAATT-AAATAAAATCTATTTCGGGATTTATT-CCTCCGTTTAACAAGATTTTATT-CGAT
* *
57688913 TCTGATTTTTTTGCAAAAACTAGAA
63 T-TGATTTGTTT-CCAAAA-TAG-A
*
57688938 ATTCAAATTAAATAAAATCTATTTCGGGATTTATTCCTACCGTTTAACAAGATTTTATTCGATTT
1 ATTAAAATTAAATAAAATCTATTTCGGGATTTATTCCT-CCGTTTAACAAGATTTTATTCGATTT
*
57689003 GATGTTGTTTCCAAATTAGA
65 GAT-TTGTTTCCAAAATAGA
57689023 ATTAAAATTAAATAAAATCTATTTCGGGATTTATT-CTCGCAGTTTAACAAGATTTTATTCGATA
1 ATTAAAATTAAATAAAATCTATTTCGGGATTTATTCCTC-C-GTTTAACAAGATTTTATTCGAT-
* *
57689087 TTGTTTTGTTTCCAAACAAAGA
63 TTGATTTGTTTCCAAA-ATAGA
* * * *
57689109 CTT--AATCAAATAAAATCTGTTTTGGGATTTATTCC
1 ATTAAAATTAAATAAAATCTATTTCGGGATTTATTCC
57689144 CGTCATTTAA
Statistics
Matches: 179, Mismatches: 18, Indels: 21
0.82 0.08 0.10
Matches are distributed among these distances:
83 1 0.01
84 30 0.17
85 69 0.39
86 14 0.08
87 41 0.23
88 24 0.13
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (83 bp):
ATTAAAATTAAATAAAATCTATTTCGGGATTTATTCCTCCGTTTAACAAGATTTTATTCGATTTG
ATTTGTTTCCAAAATAGA
Found at i:57689445 original size:91 final size:93
Alignment explanation
Indices: 57689345--57689520 Score: 225
Period size: 91 Copynumber: 1.9 Consensus size: 93
57689335 ATCAAAATGT
* * * *
57689345 AATATAATCCATTGAACGGTAG-GAATAAATCCCGAAACAAAATTTA-TTTAACTTTAAT-TTCT
1 AATAAAATCCATAGAACGG-AGAGAATAAATCCCGAAACAAAATTTATTTTAACTTTAATACTCG
57689407 TGTTTGGAAATAAAAT-AAAATAAAAAAAG
65 T-TTTGGAAATAAAATCAAAATAAAAAAAG
* * * * *
57689436 AATAAAATCCGTAGAACGGCGAGAATAAATCCCGAAACATATTTTATTTTAATTTTAATACTCGT
1 AATAAAATCCATAGAACGGAGAGAATAAATCCCGAAACAAAATTTATTTTAACTTTAATACTCGT
57689501 TTTGGAAATAAAATCAAAAT
66 TTTGGAAATAAAATCAAAAT
57689521 TAGAATAAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
90 1 0.01
91 38 0.53
92 25 0.35
93 8 0.11
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.31
Consensus pattern (93 bp):
AATAAAATCCATAGAACGGAGAGAATAAATCCCGAAACAAAATTTATTTTAACTTTAATACTCGT
TTTGGAAATAAAATCAAAATAAAAAAAG
Found at i:57689588 original size:87 final size:87
Alignment explanation
Indices: 57689367--57689664 Score: 271
Period size: 87 Copynumber: 3.4 Consensus size: 87
57689357 TGAACGGTAG
* * * * * * * *
57689367 GAATAAATCCCGAAACAAAATTTATTTAACTTTAATTTCTTGTTTGGAAATAAAATAAAATAAAA
1 GAATAAATCCCGAAACAGATTTTATTTAATTTTAA-TACTCGTTTAGAAAT-AAA-AACA-AAAT
** * **
57689432 AAAGAATAAAATCCGTAGAACGGCGA
62 AAAGAATAAAATCTATTGAACAACGA
* * * *
57689458 GAATAAATCCCGAAACATATTTTATTTTAATTTTAATACTCGTTTTGGAAATAAAATCAAAAT-T
1 GAATAAATCCCGAAACAGATTTTA-TTTAATTTTAATACTCG-TTTAGAAATAAAAACAAAATAA
57689522 AGAATAAAAT-TCATTGAACAACTG-
64 AGAATAAAATCT-ATTGAACAAC-GA
* * * * *
57689546 GAATAAATTCTGAAATAGATTTTATTTAATTTTAATATTCGTTTAGAAATAAAAACAATATAAAG
1 GAATAAATCCCGAAACAGATTTTATTTAATTTTAATACTCGTTTAGAAATAAAAACAAAATAAAG
* *
57689611 AATATAATCTGTTGAACAACGA
66 AATAAAATCTATTGAACAACGA
*
57689633 GAATTAATCCCGAAACAGATTTTATTT-ATTTT
1 GAATAAATCCCGAAACAGATTTTATTTAATTTT
57689665 CAAAATTTAT
Statistics
Matches: 171, Mismatches: 29, Indels: 19
0.78 0.13 0.09
Matches are distributed among these distances:
86 23 0.13
87 57 0.33
88 37 0.22
89 4 0.02
90 2 0.01
91 29 0.17
92 19 0.11
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (87 bp):
GAATAAATCCCGAAACAGATTTTATTTAATTTTAATACTCGTTTAGAAATAAAAACAAAATAAAG
AATAAAATCTATTGAACAACGA
Found at i:57689674 original size:13 final size:13
Alignment explanation
Indices: 57689656--57689680 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57689646 AACAGATTTT
57689656 ATTTATTTTCAAA
1 ATTTATTTTCAAA
57689669 ATTTATTTTCAA
1 ATTTATTTTCAA
57689681 TTTTTTTCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (13 bp):
ATTTATTTTCAAA
Found at i:57695746 original size:31 final size:31
Alignment explanation
Indices: 57695683--57696004 Score: 273
Period size: 31 Copynumber: 10.4 Consensus size: 31
57695673 ATCCAATGCT
*
57695683 CAAATCAA-TTCAATAATATATATATTCATATA
1 CAAATCAATTTCAATAATGTATA-A-TCATATA
57695715 CAAATCAATTTCAATAATGTATAATCATATA
1 CAAATCAATTTCAATAATGTATAATCATATA
* * *
57695746 CAAATTAATTTCAACAATGAATAATCATATA
1 CAAATCAATTTCAATAATGTATAATCATATA
* *
57695777 CGAATCAATTTTAATAATGTATAATCATATA
1 CAAATCAATTTCAATAATGTATAATCATATA
* ** *
57695808 CAAATTAATTTCAGCAATGAATAATCATATA
1 CAAATCAATTTCAATAATGTATAATCATATA
* * * * *
57695839 -AGAACCAA-TTCGACAGCT-TAT-ATCCTTATA
1 CA-AATCAATTTCAATA-ATGTATAAT-CATATA
*
57695869 CAAATCAATTTCAATAATGTGTAATCATATA
1 CAAATCAATTTCAATAATGTATAATCATATA
* ** *
57695900 CAAATTAATTTCAGCAATGAATAATCATATA
1 CAAATCAATTTCAATAATGTATAATCATATA
* * * * *
57695931 CGAATCAATTTGACA-ACT-TATATTCATTTA
1 CAAATCAATTTCA-ATAATGTATAATCATATA
* *
57695961 CAAATCAATTTCAATAATGAATAA-CTATAAA
1 CAAATCAATTTCAATAATGTATAATC-ATATA
*
57695992 CAAATTAATTTCA
1 CAAATCAATTTCA
57696005 GCAATGAATA
Statistics
Matches: 229, Mismatches: 49, Indels: 25
0.76 0.16 0.08
Matches are distributed among these distances:
29 3 0.01
30 42 0.18
31 160 0.70
32 11 0.05
33 13 0.06
ACGTcount: A:0.47, C:0.14, G:0.05, T:0.34
Consensus pattern (31 bp):
CAAATCAATTTCAATAATGTATAATCATATA
Found at i:57696032 original size:92 final size:91
Alignment explanation
Indices: 57695683--57696023 Score: 382
Period size: 92 Copynumber: 3.7 Consensus size: 91
57695673 ATCCAATGCT
* * ** *
57695683 CAAATCAA-TTCAATAATATATATATTCATATACAAATCAATTTCAATAATGTATAATCATATAC
1 CAAATCAATTTCAATAATGTATA-A-TCATATACAAATTAATTTCAGCAATGAATAATCATATAC
* ** * * *
57695747 AAATTAATTTCAACAA-TGAATAATCATATA
64 GAACCAA-TTCGACAACT-TAT-ATCATTTA
* * *
57695777 CGAATCAATTTTAATAATGTATAATCATATACAAATTAATTTCAGCAATGAATAATCATATAAGA
1 CAAATCAATTTCAATAATGTATAATCATATACAAATTAATTTCAGCAATGAATAATCATATACGA
* *
57695842 ACCAATTCGACAGCTTATATCCTTATA
66 ACCAATTCGACAACTTATATCATT-TA
*
57695869 CAAATCAATTTCAATAATGTGTAATCATATACAAATTAATTTCAGCAATGAATAATCATATACGA
1 CAAATCAATTTCAATAATGTATAATCATATACAAATTAATTTCAGCAATGAATAATCATATACGA
* *
57695934 ATCAATTTGACAACTTATATTCATTTA
66 ACCAATTCGACAACTTATA-TCATTTA
* * * *
57695961 CAAATCAATTTCAATAATGAATAA-CTATAAACAAATTAATTTCAGCAATGAATATTGATATAC
1 CAAATCAATTTCAATAATGTATAATC-ATATACAAATTAATTTCAGCAATGAATAATCATATAC
57696024 CCAACAATTC
Statistics
Matches: 213, Mismatches: 29, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
91 5 0.02
92 145 0.68
93 43 0.20
94 8 0.04
95 12 0.06
ACGTcount: A:0.46, C:0.14, G:0.06, T:0.34
Consensus pattern (91 bp):
CAAATCAATTTCAATAATGTATAATCATATACAAATTAATTTCAGCAATGAATAATCATATACGA
ACCAATTCGACAACTTATATCATTTA
Found at i:57696059 original size:92 final size:89
Alignment explanation
Indices: 57695683--57696088 Score: 350
Period size: 92 Copynumber: 4.4 Consensus size: 89
57695673 ATCCAATGCT
* * ** *
57695683 CAAATCAA-TTCAATAATATATATATTCATATACAAATCAATTTCAATAATGTATAATCATATAC
1 CAAATCAATTTCAATAATGTATA-A-TCATATACAAATTAATTTCAGCAATGAATAATCATATAC
* ** * * *
57695747 AAATTAATTTCAACAATGAATAATCATATA
64 GAACCAA-TTCGACAAT-TAT-ATC-CATA
* * *
57695777 CGAATCAATTTTAATAATGTATAATCATATACAAATTAATTTCAGCAATGAATAATCATATAAGA
1 CAAATCAATTTCAATAATGTATAATCATATACAAATTAATTTCAGCAATGAATAATCATATACGA
*
57695842 ACCAATTCGACAGCTTATATCCTTATA
66 ACCAATTCGACA-ATTATATCC--ATA
*
57695869 CAAATCAATTTCAATAATGTGTAATCATATACAAATTAATTTCAGCAATGAATAATCATATACGA
1 CAAATCAATTTCAATAATGTATAATCATATACAAATTAATTTCAGCAATGAATAATCATATACGA
* * *
57695934 ATCAATTTGACAACTTATATTCATTTA
66 ACCAATTCGACAA-TTATATCCA--TA
* * * *
57695961 CAAATCAATTTCAATAATGAATAA-CTATAAACAAATTAATTTCAGCAATGAATATTGATATACC
1 CAAATCAATTTCAATAATGTATAATC-ATATACAAATTAATTTCAGCAATGAATAATCATATA-C
* * *
57696025 CAA-CAATTCGGCAATGTATAACCACTCA
64 GAACCAATTCGACAAT-TATATCCA-T-A
* * ** * *
57696053 CGAATCAAGTTCAGCAATGTATAATTATACACAAAT
1 CAAATCAATTTCAATAATGTATAATCATATACAAAT
57696089 CAAATTCGGC
Statistics
Matches: 259, Mismatches: 41, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
90 1 0.00
91 6 0.02
92 190 0.73
93 42 0.16
94 8 0.03
95 12 0.05
ACGTcount: A:0.46, C:0.15, G:0.06, T:0.33
Consensus pattern (89 bp):
CAAATCAATTTCAATAATGTATAATCATATACAAATTAATTTCAGCAATGAATAATCATATACGA
ACCAATTCGACAATTATATCCATA
Found at i:57696090 original size:31 final size:31
Alignment explanation
Indices: 57695683--57696091 Score: 207
Period size: 31 Copynumber: 13.3 Consensus size: 31
57695673 ATCCAATGCT
** *
57695683 CAAATCAA-TTCAATAATATATATATTCATATA
1 CAAATCAATTTCAGCAATGTATA-ATT-ATATA
** *
57695715 CAAATCAATTTCAATAATGTATAATCATATA
1 CAAATCAATTTCAGCAATGTATAATTATATA
* * * *
57695746 CAAATTAATTTCAACAATGAATAATCATATA
1 CAAATCAATTTCAGCAATGTATAATTATATA
* * ** *
57695777 CGAATCAATTTTAATAATGTATAATCATATA
1 CAAATCAATTTCAGCAATGTATAATTATATA
* * *
57695808 CAAATTAATTTCAGCAATGAATAATCATATA
1 CAAATCAATTTCAGCAATGTATAATTATATA
* *
57695839 -AGAACCAA-TTC-GACAGCT-TAT-ATCCT-TATA
1 CA-AATCAATTTCAG-CA-ATGTATAAT--TATATA
** * *
57695869 CAAATCAATTTCAATAATGTGTAATCATATA
1 CAAATCAATTTCAGCAATGTATAATTATATA
* * *
57695900 CAAATTAATTTCAGCAATGAATAATCATATA
1 CAAATCAATTTCAGCAATGTATAATTATATA
* * *
57695931 CGAATCAATTTGA-CAACT-TAT-ATTCATTTA
1 CAAATCAATTTCAGCAA-TGTATAATT-ATATA
** * * *
57695961 CAAATCAATTTCAATAATGAATAACTATAAA
1 CAAATCAATTTCAGCAATGTATAATTATATA
* *
57695992 CAAATTAATTTCAGCAATGAAT-ATTGATATA
1 CAAATCAATTTCAGCAATGTATAATT-ATATA
* * ** *
57696023 CCCAA-CAA-TTCGGCAATGTATAACCACT-CA
1 -CAAATCAATTTCAGCAATGTATAATTA-TATA
* * *
57696053 CGAATCAAGTTCAGCAATGTATAATTATACA
1 CAAATCAATTTCAGCAATGTATAATTATATA
57696084 CAAATCAA
1 CAAATCAA
57696092 ATTCGGCATC
Statistics
Matches: 291, Mismatches: 62, Indels: 49
0.72 0.15 0.12
Matches are distributed among these distances:
29 8 0.03
30 58 0.20
31 195 0.67
32 17 0.06
33 13 0.04
ACGTcount: A:0.46, C:0.15, G:0.06, T:0.33
Consensus pattern (31 bp):
CAAATCAATTTCAGCAATGTATAATTATATA
Found at i:57696269 original size:91 final size:90
Alignment explanation
Indices: 57696174--57696459 Score: 263
Period size: 91 Copynumber: 3.1 Consensus size: 90
57696164 AGGTAAAACT
* * * * *
57696174 ATATACGAATCAATGCATCAACTTAAATCCATATACCAAACAGTTCGGCAATATATAACCATACA
1 ATATACAAATCAATGCGTCAACTTATATCCATATACCAAACAATTCGACAATATATAACCATACA
57696239 CGAATCAAGTTCAATATTGTATACTC
66 C-AATCAAGTTCAATATTGTATACTC
* * * * * * *
57696265 ATATACAAATCCAATTCGGC-ATTCTATATTCATA-AACAATTCAATATCGACAATTTATAACCA
1 ATATACAAAT-CAATGCGTCAACT-TATATCCATATACCAA-ACAAT-TCGACAATATATAACCA
** * * ** ** *
57696328 TGTACAATTAAATTTCAGCAAGGTAAAACT-
62 TACACAA-TCAAGTTCAATATTGT-ATACTC
*
57696358 ATATACGAATCAATGCGTCAACTTATATCCATATACCAAACAATTCGACAATATATAACCATACA
1 ATATACAAATCAATGCGTCAACTTATATCCATATACCAAACAATTCGACAATATATAACCATACA
* *
57696423 CAAATCAAGTTCGATCTTGTATACTC
66 C-AATCAAGTTCAATATTGTATACTC
57696449 ATATACAAATC
1 ATATACAAATC
57696460 CAATTCGGCA
Statistics
Matches: 144, Mismatches: 41, Indels: 20
0.70 0.20 0.10
Matches are distributed among these distances:
90 4 0.03
91 52 0.36
92 41 0.28
93 43 0.30
94 4 0.03
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (90 bp):
ATATACAAATCAATGCGTCAACTTATATCCATATACCAAACAATTCGACAATATATAACCATACA
CAATCAAGTTCAATATTGTATACTC
Found at i:57696396 original size:184 final size:184
Alignment explanation
Indices: 57696018--57696539 Score: 821
Period size: 184 Copynumber: 2.8 Consensus size: 184
57696008 ATGAATATTG
* * ** * * *
57696018 ATATACCCAACAATTCGGCAATGTATAACCACT-CACGAATCAAGTTCAGCAATGTATAATTATA
1 ATATACCAAACAATTCGGCAATATATAACCA-TACACGAATCAAGTTCAATATTGTATACTCATA
* * * *
57696082 CACAAATCAAATTCGGCATCCTATATACATAAACAATGCAATATCGACAATATATATAACCATGT
65 TACAAATCCAATTCGGCATCCTATATTCATAAACAATTCAATATCGACAAT-T-TATAACCATGT
57696147 ACAATTAAATTTCAGCAAGGTAAAACTATATACGAATCAATGCATCAACTTAAATCC
128 ACAATTAAATTTCAGCAAGGTAAAACTATATACGAATCAATGCATCAACTTAAATCC
*
57696204 ATATACCAAACAGTTCGGCAATATATAACCATACACGAATCAAGTTCAATATTGTATACTCATAT
1 ATATACCAAACAATTCGGCAATATATAACCATACACGAATCAAGTTCAATATTGTATACTCATAT
*
57696269 ACAAATCCAATTCGGCATTCTATATTCATAAACAATTCAATATCGACAATTTATAACCATGTACA
66 ACAAATCCAATTCGGCATCCTATATTCATAAACAATTCAATATCGACAATTTATAACCATGTACA
* *
57696334 ATTAAATTTCAGCAAGGTAAAACTATATACGAATCAATGCGTCAACTTATATCC
131 ATTAAATTTCAGCAAGGTAAAACTATATACGAATCAATGCATCAACTTAAATCC
* * * *
57696388 ATATACCAAACAATTCGACAATATATAACCATACACAAATCAAGTTCGATCTTGTATACTCATAT
1 ATATACCAAACAATTCGGCAATATATAACCATACACGAATCAAGTTCAATATTGTATACTCATAT
* *
57696453 ACAAATCCAATTCGGCATCCTATATTCATAAACAATTCAATATCGATAATTTATAACCATGAACA
66 ACAAATCCAATTCGGCATCCTATATTCATAAACAATTCAATATCGACAATTTATAACCATGTACA
57696518 ATTAAATTTCAGCAAGGTAAAA
131 ATTAAATTTCAGCAAGGTAAAA
57696540 ACATTATATT
Statistics
Matches: 312, Mismatches: 23, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
184 210 0.67
185 2 0.01
186 100 0.32
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.28
Consensus pattern (184 bp):
ATATACCAAACAATTCGGCAATATATAACCATACACGAATCAAGTTCAATATTGTATACTCATAT
ACAAATCCAATTCGGCATCCTATATTCATAAACAATTCAATATCGACAATTTATAACCATGTACA
ATTAAATTTCAGCAAGGTAAAACTATATACGAATCAATGCATCAACTTAAATCC
Found at i:57715628 original size:3 final size:3
Alignment explanation
Indices: 57715616--57715692 Score: 61
Period size: 3 Copynumber: 26.3 Consensus size: 3
57715606 TTCAGTTTAA
* * * * * *
57715616 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAA TAG TAG TAG TAT TAA TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
57715663 TAT TAT TAT TAT TGGT T-T TAT TAT T-T TAT T
1 TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT T
57715693 TTTGTTTATA
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
2 6 0.10
3 55 0.87
4 2 0.03
ACGTcount: A:0.31, C:0.01, G:0.06, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:57719177 original size:9 final size:9
Alignment explanation
Indices: 57719164--57719228 Score: 62
Period size: 9 Copynumber: 7.0 Consensus size: 9
57719154 AAATTAAAAA
57719164 AATATTTTT
1 AATATTTTT
*
57719173 TATATTTTT
1 AATATTTTT
57719182 AATAATTTTT
1 AAT-ATTTTT
*
57719192 AAATAATTTT
1 -AATATTTTT
57719202 AATATTTTTT
1 AATA-TTTTT
57719212 AAT-TTTTAT
1 AATATTTT-T
57719221 AA-ATTTTT
1 AATATTTTT
57719229 GTTTTTAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
8 5 0.11
9 21 0.45
10 18 0.38
11 3 0.06
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
AATATTTTT
Found at i:57719195 original size:29 final size:27
Alignment explanation
Indices: 57719163--57719228 Score: 80
Period size: 29 Copynumber: 2.4 Consensus size: 27
57719153 AAAATTAAAA
*
57719163 AAATATTTTTTATATTTTTAATAATTTTT
1 AAATATTTTTAATATTTTT--TAATTTTT
*
57719192 AAATAATTTTAATATTTTTTAATTTTT
1 AAATATTTTTAATATTTTTTAATTTTT
57719219 ATAA-ATTTTT
1 A-AATATTTTT
57719229 GTTTTTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 14 0.42
28 2 0.06
29 17 0.52
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (27 bp):
AAATATTTTTAATATTTTTTAATTTTT
Found at i:57719196 original size:11 final size:10
Alignment explanation
Indices: 57719167--57719214 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
57719157 TTAAAAAAAT
*
57719167 ATTTTTTAT-
1 ATTTTTAATA
57719176 ATTTTTAATA
1 ATTTTTAATA
57719186 ATTTTTAAATA
1 ATTTTT-AATA
57719197 A-TTTTAATA
1 ATTTTTAATA
*
57719206 TTTTTTAAT
1 ATTTTTAAT
57719215 TTTTATAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
9 12 0.35
10 17 0.50
11 5 0.15
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:57720908 original size:19 final size:18
Alignment explanation
Indices: 57720892--57720925 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
57720882 GCTGAAAATG
57720892 AAAAGAGAA-GATAAAAA
1 AAAAGAGAATGATAAAAA
*
57720909 ACAAGAGAATGATAAAA
1 AAAAGAGAATGATAAAA
57720926 TTTGAATTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.71, C:0.03, G:0.18, T:0.09
Consensus pattern (18 bp):
AAAAGAGAATGATAAAAA
Found at i:57721334 original size:17 final size:17
Alignment explanation
Indices: 57721314--57721347 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
57721304 TCATTATTGA
57721314 AATTATATATATATTTG
1 AATTATATATATATTTG
*
57721331 AATTATTTATATATTTG
1 AATTATATATATATTTG
57721348 TTTCTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (17 bp):
AATTATATATATATTTG
Found at i:57727382 original size:20 final size:20
Alignment explanation
Indices: 57727348--57727389 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
57727338 AACTATTTAA
** *
57727348 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
57727368 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
57727388 AT
1 AT
57727390 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:57737428 original size:19 final size:20
Alignment explanation
Indices: 57737401--57737438 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
57737391 GAATTATAAA
57737401 AAAACTATTTTAAT-TTTTG
1 AAAACTATTTTAATCTTTTG
*
57737420 AAAATTATTTTAATCTTTT
1 AAAACTATTTTAATCTTTT
57737439 TGTAATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (20 bp):
AAAACTATTTTAATCTTTTG
Found at i:57742287 original size:26 final size:27
Alignment explanation
Indices: 57742231--57742291 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 27
57742221 TTTGGAGACA
*
57742231 ATTTTGTTTATAGAATGAATGCATTCATG
1 ATTTTGTTTATAAAATG-ATGCATT-ATG
57742260 ATTTTGTTTATAAAAATG-TGCATT-TG
1 ATTTTGTTTAT-AAAATGATGCATTATG
57742286 ATTTTG
1 ATTTTG
57742292 ATACAAAATC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 8 0.27
28 6 0.20
29 11 0.37
30 5 0.17
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.49
Consensus pattern (27 bp):
ATTTTGTTTATAAAATGATGCATTATG
Found at i:57742808 original size:21 final size:21
Alignment explanation
Indices: 57742782--57742822 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
57742772 TCAAAACAAC
*
57742782 ATAGTTTTGCCTTTTAACTTG
1 ATAGTTTTGACTTTTAACTTG
57742803 ATAGTTTTGACTTTTAACTT
1 ATAGTTTTGACTTTTAACTT
57742823 TAGGAAAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.22, C:0.12, G:0.12, T:0.54
Consensus pattern (21 bp):
ATAGTTTTGACTTTTAACTTG
Found at i:57744393 original size:25 final size:24
Alignment explanation
Indices: 57744365--57744453 Score: 79
Period size: 25 Copynumber: 3.6 Consensus size: 24
57744355 ATTTGGGAAT
*
57744365 GCTCATACGAGCACATAAACAAGAA
1 GCTCATACGAGC-CATAAACGAGAA
* * * *
57744390 GCTCTTTCGAGCTATATAACGGGAA
1 GCTCATACGAGCCATA-AACGAGAA
** *
57744415 GCTCATGTGAGCCATGTAACGAGAA
1 GCTCATACGAGCCAT-AAACGAGAA
57744440 GCTCATACGAGCCA
1 GCTCATACGAGCCA
57744454 ATATCGGGAA
Statistics
Matches: 49, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
24 3 0.06
25 46 0.94
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.19
Consensus pattern (24 bp):
GCTCATACGAGCCATAAACGAGAA
Found at i:57744516 original size:25 final size:25
Alignment explanation
Indices: 57744486--57744554 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 25
57744476 CCAATATCGA
57744486 GAAGCTCCAGAGAGCCATTAATCAG
1 GAAGCTCCAGAGAGCCATTAATCAG
* *
57744511 GAAGCTCACA-ATGAGCCTTTAATCGG
1 GAAGCTC-CAGA-GAGCCATTAATCAG
*
57744537 GAAG-TTCACGAGAGCCAT
1 GAAGCTCCA-GAGAGCCAT
57744555 ATATCGAGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
24 2 0.06
25 15 0.42
26 19 0.53
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (25 bp):
GAAGCTCCAGAGAGCCATTAATCAG
Found at i:57744560 original size:25 final size:25
Alignment explanation
Indices: 57744398--57744569 Score: 77
Period size: 25 Copynumber: 6.9 Consensus size: 25
57744388 AAGCTCTTTC
* * * *
57744398 GAGCTATATAACGGGAAGCTCATGT
1 GAGCCATATATCGGGAAGCTCACGA
* * * *
57744423 GAGCCATGTAACGAGAAGCTCA-TA
1 GAGCCATATATCGGGAAGCTCACGA
* * * *
57744447 CGAGCCA-ATATCGGGAAGGTTAAAGC
1 -GAGCCATATATCGGGAA-GCTCACGA
*
57744473 GAGCCA-ATATCGAGAAGCTC-CAGA
1 GAGCCATATATCGGGAAGCTCAC-GA
* *
57744497 GAGCCAT-TAATCAGGAAGCTCACAA
1 GAGCCATAT-ATCGGGAAGCTCACGA
* *
57744522 TGAGCC-TTTAATCGGGAAGTTCACGA
1 -GAGCCATAT-ATCGGGAAGCTCACGA
* *
57744548 GAGCCATATATCGAGATGCTCA
1 GAGCCATATATCGGGAAGCTCA
57744570 TAAGAGCTAC
Statistics
Matches: 110, Mismatches: 27, Indels: 20
0.70 0.17 0.13
Matches are distributed among these distances:
24 17 0.15
25 70 0.64
26 23 0.21
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (25 bp):
GAGCCATATATCGGGAAGCTCACGA
Found at i:57746233 original size:19 final size:19
Alignment explanation
Indices: 57746211--57746258 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
57746201 TTTTATAAAA
*
57746211 TTTT-AAAATTTTTATATTT
1 TTTTAAAAATTTATA-ATTT
57746230 TTTTAAAAATTTATAATTT
1 TTTTAAAAATTTATAATTT
57746249 TTTTAAAAAT
1 TTTTAAAAAT
57746259 ACAAATTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 18 0.67
20 9 0.33
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTAAAAATTTATAATTT
Found at i:57746236 original size:27 final size:29
Alignment explanation
Indices: 57746196--57746250 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 29
57746186 ATTCCAAAAT
*
57746196 TATTATTTTATAAAATTTTAAAATTTTTA
1 TATTATTTTATAAAAATTTAAAATTTTTA
*
57746225 TATT-TTTT-TAAAAATTTATAATTTTT
1 TATTATTTTATAAAAATTTAAAATTTTT
57746251 TTAAAAATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 16 0.67
28 4 0.17
29 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (29 bp):
TATTATTTTATAAAAATTTAAAATTTTTA
Found at i:57746265 original size:18 final size:19
Alignment explanation
Indices: 57746226--57746267 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
57746216 AAATTTTTAT
**
57746226 ATTTTTTTAAAAATTTATA
1 ATTTTTTTAAAAATACATA
57746245 ATTTTTTTAAAAATACA-A
1 ATTTTTTTAAAAATACATA
57746263 ATTTT
1 ATTTT
57746268 AGAATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (19 bp):
ATTTTTTTAAAAATACATA
Found at i:57746295 original size:18 final size:21
Alignment explanation
Indices: 57746263--57746306 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
57746253 AAAAATACAA
*
57746263 ATTTTAGAATTTTTATAAA-T
1 ATTTTAGAATTTTTAAAAATT
57746283 ATTTT-GAA-TTTTAAAAATT
1 ATTTTAGAATTTTTAAAAATT
57746302 ATTTT
1 ATTTT
57746307 CAAAATTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 8 0.36
19 9 0.41
20 5 0.23
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
ATTTTAGAATTTTTAAAAATT
Found at i:57746304 original size:19 final size:20
Alignment explanation
Indices: 57746263--57746333 Score: 60
Period size: 20 Copynumber: 3.6 Consensus size: 20
57746253 AAAAATACAA
*
57746263 ATTTTAGAATTTTTATAAA-T
1 ATTTTAGAA-TTTTAAAAATT
57746283 ATTTT-GAATTTTAAAAATT
1 ATTTTAGAATTTTAAAAATT
* *
57746302 ATTTTCA-AAATTTGAAAATT
1 ATTTT-AGAATTTTAAAAATT
*
57746322 ACTTT-GAATTTT
1 ATTTTAGAATTTT
57746334 TTGTAATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
18 8 0.19
19 14 0.33
20 20 0.48
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (20 bp):
ATTTTAGAATTTTAAAAATT
Found at i:57749133 original size:33 final size:29
Alignment explanation
Indices: 57749095--57749165 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 29
57749085 CAACTATAAG
57749095 TGCCGAATGCACATATTCACTTATACCCACCTA
1 TGCCGAATGCACATA-T-A--TATACCCACCTA
*
57749128 TGCCGAATG--CATATATATATCCACCTA
1 TGCCGAATGCACATATATATACCCACCTA
57749155 TGCCGAATGCA
1 TGCCGAATGCA
57749166 TACATATACA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
27 20 0.57
29 1 0.03
30 1 0.03
31 4 0.11
33 9 0.26
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.27
Consensus pattern (29 bp):
TGCCGAATGCACATATATATACCCACCTA
Found at i:57749146 original size:27 final size:27
Alignment explanation
Indices: 57749116--57749174 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
57749106 CATATTCACT
*
57749116 TATACCCACCTATGCCGAATGCATATA
1 TATACCCACCTATGCCGAATGCATACA
*
57749143 TATATCCACCTATGCCGAATGCATACA
1 TATACCCACCTATGCCGAATGCATACA
57749170 TATAC
1 TATAC
57749175 ACACTTAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.34, C:0.29, G:0.10, T:0.27
Consensus pattern (27 bp):
TATACCCACCTATGCCGAATGCATACA
Found at i:57749426 original size:41 final size:41
Alignment explanation
Indices: 57749361--57749560 Score: 251
Period size: 41 Copynumber: 4.9 Consensus size: 41
57749351 TTTAAACAGA
* * * * *
57749361 TTCACTGGCACTTCA-CCTGATAGGCTTATAGTCTAATTCCG
1 TTCACCGGCACTT-AGCCTGCTAGGCGTATAGTCTGATTCAG
* *
57749402 TTCACCGGCACTTAGCCTGCTAGGCCTATAGCCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGGCGTATAGTCTGATTCAG
* * *
57749443 TTCACCGGCACTTAGCCTGCTAGGCTTGTAGCCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGGCGTATAGTCTGATTCAG
* *
57749484 TTCACCGGCACTTAGCCTGCT-GGACGTATAGTCCGATTCAA
1 TTCACCGGCACTTAGCCTGCTAGG-CGTATAGTCTGATTCAG
*
57749525 TTCACCGGCACTTAGCCTGCTAGACGTATAGTCTGA
1 TTCACCGGCACTTAGCCTGCTAGGCGTATAGTCTGA
57749561 ACAATTTCAC
Statistics
Matches: 141, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
40 3 0.02
41 137 0.97
42 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.29
Consensus pattern (41 bp):
TTCACCGGCACTTAGCCTGCTAGGCGTATAGTCTGATTCAG
Found at i:57756657 original size:31 final size:31
Alignment explanation
Indices: 57756614--57756675 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
57756604 CATATTCACT
*
57756614 TATACCCACCTATGCCGAATGCATACATATA
1 TATACCCACCTATACCGAATGCATACATATA
* *
57756645 TATATCCACCTATACCGAATGCATTCATATA
1 TATACCCACCTATACCGAATGCATACATATA
57756676 CACACTTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.29
Consensus pattern (31 bp):
TATACCCACCTATACCGAATGCATACATATA
Found at i:57756928 original size:41 final size:41
Alignment explanation
Indices: 57756883--57757062 Score: 220
Period size: 41 Copynumber: 4.4 Consensus size: 41
57756873 CTTCACTTGA
* * *
57756883 TAGGCTTATAGTCTAATTCCGTTCACCGGCACTTAGCCTGC
1 TAGGCGTATAGTCTGATTCAGTTCACCGGCACTTAGCCTGC
*
57756924 TAGGCCTATAG-CTTGATTCAGTTCACCGGCACTTAGCCTGC
1 TAGGCGTATAGTC-TGATTCAGTTCACCGGCACTTAGCCTGC
* * * *
57756965 TAGGCTTGTAGCCTGATTCAGTTCACCAGCACTTAGCCTGC
1 TAGGCGTATAGTCTGATTCAGTTCACCGGCACTTAGCCTGC
* * *
57757006 T-GGACGTATAGTCCGATTCAATTCACCGGCACTTAGTCTGC
1 TAGG-CGTATAGTCTGATTCAGTTCACCGGCACTTAGCCTGC
*
57757047 TAGACGTATAGTCTGA
1 TAGGCGTATAGTCTGA
57757063 ACAATTTCAC
Statistics
Matches: 120, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
40 3 0.03
41 115 0.96
42 2 0.02
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.30
Consensus pattern (41 bp):
TAGGCGTATAGTCTGATTCAGTTCACCGGCACTTAGCCTGC
Found at i:57774890 original size:9 final size:10
Alignment explanation
Indices: 57774864--57774892 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
57774854 ATTTTGTGAA
57774864 TTATTTAAAT
1 TTATTTAAAT
57774874 TTATTTAAAT
1 TTATTTAAAT
57774884 TTA-TTAAAT
1 TTATTTAAAT
57774893 AAATAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.32
10 13 0.68
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
TTATTTAAAT
Found at i:57775565 original size:29 final size:30
Alignment explanation
Indices: 57775533--57775591 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
57775523 TTTGGCCTAA
57775533 TGTGCAATTCTGTACATG-AACTTTGATTT
1 TGTGCAATTCTGTACATGAAACTTTGATTT
* * *
57775562 TGTGTAATTTTGTACATGAAATTTTGATTT
1 TGTGCAATTCTGTACATGAAACTTTGATTT
57775592 GATCAAATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.25, C:0.08, G:0.17, T:0.49
Consensus pattern (30 bp):
TGTGCAATTCTGTACATGAAACTTTGATTT
Found at i:57775777 original size:31 final size:30
Alignment explanation
Indices: 57775737--57775815 Score: 81
Period size: 31 Copynumber: 2.6 Consensus size: 30
57775727 AACTGAATCA
* *
57775737 AAATTAAAGTTTCATGTATATATTTGA-ACC
1 AAATAAAAGTTTCATGTATATACTT-ACACC
* *
57775767 ACAATAAAAGTTTCATATGTATACTTACACC
1 A-AATAAAAGTTTCATGTATATACTTACACC
*
57775798 AAATCAAAG-TTCATGTAT
1 AAATAAAAGTTTCATGTAT
57775816 CAAATTACAC
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
29 7 0.17
30 9 0.22
31 24 0.60
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (30 bp):
AAATAAAAGTTTCATGTATATACTTACACC
Found at i:57776091 original size:3 final size:3
Alignment explanation
Indices: 57776083--57776135 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
57776073 TTGGAAGAGT
57776083 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
57776131 TTA TT
1 TTA TT
57776136 TTACATCAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:57781351 original size:95 final size:95
Alignment explanation
Indices: 57781224--57781411 Score: 250
Period size: 95 Copynumber: 2.0 Consensus size: 95
57781214 GAACTTGGGG
* * * * * *
57781224 TGCGATCTTATATCAACGAGTTGTTTGAAGAAGCGATATTAAATCAACTATATCAAATAAGACTG
1 TGCGATCTGAAATCAACGAGCTATTTAAAGAAGCGATATTAAATCAACCATATCAAATAAGACTG
* *
57781289 TTCATGATTTTAAATCGAACGAACATAGGT
66 ATCATGATCTTAAATCGAACGAACATAGGT
* * * *
57781319 TGCGATCTGAAATCAACGAGCTATTTAAAGAAGTGATATTAAATCAGCCATCTCAAATAAGATTG
1 TGCGATCTGAAATCAACGAGCTATTTAAAGAAGCGATATTAAATCAACCATATCAAATAAGACTG
* *
57781384 ATCATGCTCTTAAATCGAATGAACATAG
66 ATCATGATCTTAAATCGAACGAACATAG
57781412 ATTGAGATAT
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
95 79 1.00
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (95 bp):
TGCGATCTGAAATCAACGAGCTATTTAAAGAAGCGATATTAAATCAACCATATCAAATAAGACTG
ATCATGATCTTAAATCGAACGAACATAGGT
Found at i:57783728 original size:21 final size:21
Alignment explanation
Indices: 57783699--57783749 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
57783689 TGACTACGTA
*
57783699 TGTCGCGACATCGGGGTTCGT
1 TGTCGCGACATCGAGGTTCGT
* *
57783720 TGTCACGACATTGAGGTTCGT
1 TGTCGCGACATCGAGGTTCGT
57783741 TGTCGCGAC
1 TGTCGCGAC
57783750 TGTAACACCC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.14, C:0.24, G:0.33, T:0.29
Consensus pattern (21 bp):
TGTCGCGACATCGAGGTTCGT
Found at i:57785568 original size:33 final size:33
Alignment explanation
Indices: 57785526--57785589 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
57785516 TTAGAGATTT
* *
57785526 GTGTATCCGATGAGTGATGGTAAAGCTCACTTC
1 GTGTATCCGATGAGTAATGATAAAGCTCACTTC
57785559 GTGTATCCGATGAGTAATGATAAAGCTCACT
1 GTGTATCCGATGAGTAATGATAAAGCTCACT
57785590 ATATGTTTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (33 bp):
GTGTATCCGATGAGTAATGATAAAGCTCACTTC
Found at i:57785743 original size:68 final size:68
Alignment explanation
Indices: 57785611--57785744 Score: 241
Period size: 68 Copynumber: 2.0 Consensus size: 68
57785601 AACTCAAGCG
*
57785611 CCAATCTATCATATTATATGTAACTATGTGGAACATGTTTTATGCTTAATGGAGTATGCGCTATA
1 CCAATCTATCATATTATATGTAACTATGTGGAACATGTTTTATGCTTAATGGAGTATGCACTATA
57785676 TCA
66 TCA
* *
57785679 CCAATCTATCATATTATATGTAACTGTGTGGAACATGTTTTATGCTTAATGGAGTATGTACTATA
1 CCAATCTATCATATTATATGTAACTATGTGGAACATGTTTTATGCTTAATGGAGTATGCACTATA
57785744 T
66 T
57785745 TGCAAATTTA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.40
Consensus pattern (68 bp):
CCAATCTATCATATTATATGTAACTATGTGGAACATGTTTTATGCTTAATGGAGTATGCACTATA
TCA
Found at i:57785757 original size:68 final size:68
Alignment explanation
Indices: 57785613--57785765 Score: 229
Period size: 68 Copynumber: 2.3 Consensus size: 68
57785603 CTCAAGCGCC
*
57785613 AATCTATCATATTATATGTAACTATGTGGAACATGTTTTATGCTTAATGGAGTATGCGCTATATC
1 AATCTATCATATTATATGTAACTATGTGGAACATGTTTTATGCTTAATGGAGTATGCACTATATC
*
57785678 ACC
66 ACA
* * *
57785681 AATCTATCATATTATATGTAACTGTGTGGAACATGTTTTATGCTTAATGGAGTATGTACTATATT
1 AATCTATCATATTATATGTAACTATGTGGAACATGTTTTATGCTTAATGGAGTATGCACTATATC
*
57785746 GCA
66 ACA
*
57785749 AATTTATC--ATTATATGT
1 AATCTATCATATTATATGT
57785766 GATTTAAGAG
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
66 9 0.12
68 69 0.88
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (68 bp):
AATCTATCATATTATATGTAACTATGTGGAACATGTTTTATGCTTAATGGAGTATGCACTATATC
ACA
Done.