Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 195 of 205
Found at i:57795226 original size:48 final size:48
Alignment explanation
Indices: 57795151--57795250 Score: 182
Period size: 48 Copynumber: 2.1 Consensus size: 48
57795141 CCAAGGTGCT
57795151 ATCCCAAATTTAGATACTGTTTCCCCTGTGCAGCAAGAAGTTAGCACG
1 ATCCCAAATTTAGATACTGTTTCCCCTGTGCAGCAAGAAGTTAGCACG
* *
57795199 ATCCCAGATTTAGATACTGTTTTCCCTGTGCAGCAAGAAGTTAGCACG
1 ATCCCAAATTTAGATACTGTTTCCCCTGTGCAGCAAGAAGTTAGCACG
57795247 ATCC
1 ATCC
57795251 TTCCCAATAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (48 bp):
ATCCCAAATTTAGATACTGTTTCCCCTGTGCAGCAAGAAGTTAGCACG
Found at i:57806080 original size:5 final size:5
Alignment explanation
Indices: 57806070--57806097 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
57806060 CGCCATATTT
57806070 AAAAC AAAAC AAAAC AAAAC AAAAC AAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAA
57806098 TTAAATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:57807884 original size:301 final size:300
Alignment explanation
Indices: 57807141--57807897 Score: 941
Period size: 302 Copynumber: 2.5 Consensus size: 300
57807131 AGGTTCTAAT
* * * * *
57807141 TTTTAATTTTAACATCGTACATATTTCACT-TGTTACTGTTAATTAGTTCTAAATAATACTTTTC
1 TTTT-ATTTTAATATCGTACATATTTCA-TATCTTACTATTAATTAGTTCCAAACAATACTTTTC
* * * * *
57807205 ATCATTTATTGTATGTTGTTTTTAAACAAACGTCCGTGTTTTAAATACGTGATTTTCATACATAT
64 ATCATTTATTGTATGTTGTTTTTAAACACACGTCTGTGTTTTAAATATGTGATTTTCACACGTAT
* * *
57807270 ACACATGTGATATGATTTCTAGTAAGAATAATGTTGTTGATCTAGTGTCACAAATTAACTCGACA
129 ACACATGTGATAAGATTTCTAGTATGAATAATGTTGTTGATCTAGTGTCACAAATTAACACGACA
* * * *
57807335 CCAATTCAGGATTAATGACAAAACAATAATAAATTGTATTCATTTAGTATTCCTAATATGATGTG
194 CCAACTCAGGATTAATGACAAAACAATAAAAAATTGTATTCATTTAGTATTCCTAATATAATGTA
* *
57807400 TTTTTGTGTTTAAATTTCATTTTACTCACAATTTAACCTATTT
259 TTTTTATGTTTAAATTTCATTTTACTCACAATTTAACCTA-TA
* *
57807443 TTTTCATTTTAATATCGTACATATTTCATATGTTACTATTAATTAGTTCCAAACCATACTTTTCA
1 TTTT-ATTTTAATATCGTACATATTTCATATCTTACTATTAATTAGTTCCAAACAATACTTTTCA
** * *
57807508 TCATTTATTGTATGTTGTTTTTAAACACACGTCTGTGTCCTAAATATGTAATTTTCACATGTATA
65 TCATTTATTGTATGTTGTTTTTAAACACACGTCTGTGTTTTAAATATGTGATTTTCACACGTATA
* * * * *
57807573 CACGTGTGATAAGATTTTTAGTATTAATAATGTTGTTGATTTAGTGTGACAAATTAACACGACAC
130 CACATGTGATAAGATTTCTAGTATGAATAATGTTGTTGATCTAGTGTCACAAATTAACACGACAC
* * *
57807638 CAACTCAGGATTGATGACAAAACAATGATAAATAATTGTATTCATTTAGTATTCTTAATCTAATG
195 CAACTCAGGATTAATGACAAAACAAT-A-AAA-AATTGTATTCATTTAGTATTCCTAATATAATG
* *
57807703 TATTTTTATGTTTAAATTT-AGTTTTACTTACAATTTAATCTA-A
257 TATTTTTATGTTTAAATTTCA-TTTTACTCACAATTTAACCTATA
* * * * *
57807746 TTTT-TTTTAATATTGTACATATTTTATGTCTTATTATTAATTAGCTCCAAACAATA-TGTTTCA
1 TTTTATTTTAATATCGTACATATTTCATATCTTACTATTAATTAGTTCCAAACAATACT-TTTCA
* * * * * * *
57807809 TTATTTATTGTATATTATTTTTAAACACACCAT-TGTGTTTTAAATATATGATTTCCACACGCAT
65 TCATTTATTGTATGTTGTTTTTAAACACA-CGTCTGTGTTTTAAATATGTGATTTTCACACGTAT
* *
57807873 ACGCATGTGATAAAATTTCTAGTAT
129 ACACATGTGATAAGATTTCTAGTAT
57807898 ACATTATAGA
Statistics
Matches: 392, Mismatches: 56, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
300 1 0.00
301 122 0.31
302 196 0.50
303 5 0.01
304 3 0.01
305 65 0.17
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.44
Consensus pattern (300 bp):
TTTTATTTTAATATCGTACATATTTCATATCTTACTATTAATTAGTTCCAAACAATACTTTTCAT
CATTTATTGTATGTTGTTTTTAAACACACGTCTGTGTTTTAAATATGTGATTTTCACACGTATAC
ACATGTGATAAGATTTCTAGTATGAATAATGTTGTTGATCTAGTGTCACAAATTAACACGACACC
AACTCAGGATTAATGACAAAACAATAAAAAATTGTATTCATTTAGTATTCCTAATATAATGTATT
TTTATGTTTAAATTTCATTTTACTCACAATTTAACCTATA
Found at i:57813506 original size:37 final size:36
Alignment explanation
Indices: 57813423--57813508 Score: 86
Period size: 37 Copynumber: 2.3 Consensus size: 36
57813413 ATTTGTGAAG
57813423 TAATAACAAACAATTTCACATGTCAATCAATTTAGAA
1 TAATAACAAACAATTTCACA-GTCAATCAATTTAGAA
* * **
57813460 CAATGACAAACAATTTTGCACA-TCAATTTATTTA-ACA
1 TAATAACAAACAA-TTT-CACAGTCAATCAATTTAGA-A
57813497 TAATAACAAACA
1 TAATAACAAACA
57813509 GTCTCGCATA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
36 1 0.03
37 32 0.80
38 3 0.08
39 4 0.10
ACGTcount: A:0.49, C:0.17, G:0.05, T:0.29
Consensus pattern (36 bp):
TAATAACAAACAATTTCACAGTCAATCAATTTAGAA
Found at i:57814901 original size:18 final size:18
Alignment explanation
Indices: 57814878--57814915 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
57814868 TCACTAGATA
57814878 AGCATATGTCTAGTCTCG
1 AGCATATGTCTAGTCTCG
57814896 AGCATATGTCTAGTCTCG
1 AGCATATGTCTAGTCTCG
57814914 AG
1 AG
57814916 TTCGAATCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.32
Consensus pattern (18 bp):
AGCATATGTCTAGTCTCG
Found at i:57815989 original size:42 final size:42
Alignment explanation
Indices: 57815942--57816054 Score: 172
Period size: 42 Copynumber: 2.7 Consensus size: 42
57815932 ACACCGACAT
* *
57815942 AGGACACGTGCATGTGTCTAGGTCGTGTGAATCACACAGCCA
1 AGGACACGGGCATGTGTCTAGGCCGTGTGAATCACACAGCCA
* *
57815984 AGGACACGGGCATGTGTCCAGGCCGTGTGAATCACACGGCCA
1 AGGACACGGGCATGTGTCTAGGCCGTGTGAATCACACAGCCA
* *
57816026 AGGGCACGGGCGTGTGTCTAGGCCGTGTG
1 AGGACACGGGCATGTGTCTAGGCCGTGTG
57816055 GCATATAAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.21, C:0.25, G:0.35, T:0.19
Consensus pattern (42 bp):
AGGACACGGGCATGTGTCTAGGCCGTGTGAATCACACAGCCA
Found at i:57819403 original size:21 final size:21
Alignment explanation
Indices: 57819365--57819404 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
57819355 CTTTAAAATA
*
57819365 TTTTATATTTACTTTTTAATT
1 TTTTATATTTACTATTTAATT
57819386 TTTTATAATTTA-TATTTAA
1 TTTTAT-ATTTACTATTTAA
57819405 ATGTTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTTATATTTACTATTTAATT
Found at i:57819428 original size:30 final size:29
Alignment explanation
Indices: 57819364--57819429 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
57819354 TCTTTAAAAT
* * *
57819364 ATTTTATATTTACTTTTTAATTTTTTATA
1 ATTTTATATTTAATGTTTAAATTTTTATA
57819393 A-TTTATATTTAAATGTTTAAATTTTTA-A
1 ATTTTATATTT-AATGTTTAAATTTTTATA
57819421 GATTTTATA
1 -ATTTTATA
57819430 ATATTTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
28 10 0.32
29 15 0.48
30 6 0.19
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (29 bp):
ATTTTATATTTAATGTTTAAATTTTTATA
Found at i:57819748 original size:13 final size:13
Alignment explanation
Indices: 57819730--57819768 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
57819720 AACCTATATT
57819730 TTAAAATTTATAA
1 TTAAAATTTATAA
57819743 TTAAAATTTGATAA
1 TTAAAATTT-ATAA
*
57819757 TAAAAATATTAT
1 TTAAAAT-TTAT
57819769 TATAAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 9 0.39
14 12 0.52
15 2 0.09
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (13 bp):
TTAAAATTTATAA
Found at i:57822595 original size:64 final size:64
Alignment explanation
Indices: 57822521--57822650 Score: 233
Period size: 64 Copynumber: 2.0 Consensus size: 64
57822511 AATTCATTAG
** *
57822521 TTGATGTTGTGTTCACACAATAAAGGGAATGGAATCTTTCTTAGATATCTTGTGATTTAGGGCA
1 TTGATGTTGTGTTCACACAATAAAGGGAATAAAATCTTTCTTAGATATCTCGTGATTTAGGGCA
57822585 TTGATGTTGTGTTCACACAATAAAGGGAATAAAATCTTTCTTAGATATCTCGTGATTTAGGGCA
1 TTGATGTTGTGTTCACACAATAAAGGGAATAAAATCTTTCTTAGATATCTCGTGATTTAGGGCA
57822649 TT
1 TT
57822651 ACTTTTGATA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.38
Consensus pattern (64 bp):
TTGATGTTGTGTTCACACAATAAAGGGAATAAAATCTTTCTTAGATATCTCGTGATTTAGGGCA
Found at i:57823547 original size:20 final size:20
Alignment explanation
Indices: 57823522--57823562 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
57823512 GCTAAGGGAC
57823522 TCATGAGGCAATTAAAACAT
1 TCATGAGGCAATTAAAACAT
57823542 TCATGAGGCAATTAAAACAT
1 TCATGAGGCAATTAAAACAT
57823562 T
1 T
57823563 ATTCTAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.27
Consensus pattern (20 bp):
TCATGAGGCAATTAAAACAT
Found at i:57830866 original size:19 final size:20
Alignment explanation
Indices: 57830842--57830879 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
57830832 AAATTAAGTT
*
57830842 TTAATTAA-TTATAATTAAC
1 TTAATTAACTAATAATTAAC
57830861 TTAATTAACTAATAATTAA
1 TTAATTAACTAATAATTAA
57830880 GTAACACTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAATTAACTAATAATTAAC
Found at i:57842523 original size:51 final size:51
Alignment explanation
Indices: 57842464--57842565 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
57842454 ACTAAGTGAA
57842464 GAAATTGCGTAGTTTAGATTGATAATGACAGATGAAATCTAGATGGATTCT
1 GAAATTGCGTAGTTTAGATTGATAATGACAGATGAAATCTAGATGGATTCT
57842515 GAAATTGCGTAGTTTAGATTGATAATGACAGATGAAATCTAGATGGATTCT
1 GAAATTGCGTAGTTTAGATTGATAATGACAGATGAAATCTAGATGGATTCT
57842566 TTCCTGGGTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.33
Consensus pattern (51 bp):
GAAATTGCGTAGTTTAGATTGATAATGACAGATGAAATCTAGATGGATTCT
Found at i:57842558 original size:25 final size:25
Alignment explanation
Indices: 57842478--57842558 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
57842468 TTGCGTAGTT
57842478 TAGATTGATAATGACAGATGAAATC
1 TAGATTGATAATGACAGATGAAATC
* ** * * *
57842503 TAGATGGATTCTGA-A-ATTGCGTAGTT
1 TAGATTGATAATGACAGA-T--GAAATC
57842529 TAGATTGATAATGACAGATGAAATC
1 TAGATTGATAATGACAGATGAAATC
57842554 TAGAT
1 TAGAT
57842559 GGATTCTTTC
Statistics
Matches: 39, Mismatches: 12, Indels: 10
0.64 0.20 0.16
Matches are distributed among these distances:
23 1 0.03
24 2 0.05
25 19 0.49
26 14 0.36
27 2 0.05
28 1 0.03
ACGTcount: A:0.38, C:0.07, G:0.22, T:0.32
Consensus pattern (25 bp):
TAGATTGATAATGACAGATGAAATC
Found at i:57842652 original size:13 final size:13
Alignment explanation
Indices: 57842634--57842658 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57842624 TGTCGTGTTC
57842634 TTTAGTTAATTAA
1 TTTAGTTAATTAA
57842647 TTTAGTTAATTA
1 TTTAGTTAATTA
57842659 TAGTTTTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (13 bp):
TTTAGTTAATTAA
Found at i:57846740 original size:43 final size:43
Alignment explanation
Indices: 57846618--57846740 Score: 201
Period size: 43 Copynumber: 2.9 Consensus size: 43
57846608 GCGCTTTCCC
* * * *
57846618 TGACCTTTAGCGGCGCTTTTTTCACAAACGCCGCTAAAGAACA
1 TGACTTTTAGCGGCTCTTTTTCCACAAACGCCGCTATAGAACA
57846661 TGACTTTTAGCGGCTCTTTTTCCACAAACGCCGCTATAGAACA
1 TGACTTTTAGCGGCTCTTTTTCCACAAACGCCGCTATAGAACA
*
57846704 TGACTTTTAGCGGCTCTTCTTCCACAAACGCCGCTAT
1 TGACTTTTAGCGGCTCTTTTTCCACAAACGCCGCTAT
57846741 TGTTTGGTGG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 75 1.00
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (43 bp):
TGACTTTTAGCGGCTCTTTTTCCACAAACGCCGCTATAGAACA
Found at i:57846943 original size:20 final size:20
Alignment explanation
Indices: 57846902--57846940 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
57846892 ATTTCAAAGT
*
57846902 ATATGAATAAAATAATATTA
1 ATATGAATAAAAAAATATTA
*
57846922 ATATTAATAAATAAAATAT
1 ATATGAATAAA-AAAATAT
57846941 AATTCATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (20 bp):
ATATGAATAAAAAAATATTA
Found at i:57854970 original size:15 final size:15
Alignment explanation
Indices: 57854946--57854975 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
57854936 TTAAATAATA
*
57854946 ATTTATATTTATATT
1 ATTTACATTTATATT
57854961 ATTTACATTTATATT
1 ATTTACATTTATATT
57854976 CTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTTACATTTATATT
Found at i:57855135 original size:21 final size:21
Alignment explanation
Indices: 57855102--57855165 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
57855092 AAGCCTTAAT
* *
57855102 CATAAATCTTAAACCCCAAAC
1 CATAAACCATAAACCCCAAAC
* * *
57855123 TATAAACCATAAATCTCAAAC
1 CATAAACCATAAACCCCAAAC
* * *
57855144 CGTAAACCTTAAACCCTAAAC
1 CATAAACCATAAACCCCAAAC
57855165 C
1 C
57855166 CGTCAATTAA
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.47, C:0.31, G:0.02, T:0.20
Consensus pattern (21 bp):
CATAAACCATAAACCCCAAAC
Found at i:57855271 original size:21 final size:22
Alignment explanation
Indices: 57855245--57855320 Score: 63
Period size: 21 Copynumber: 3.6 Consensus size: 22
57855235 ATCGAAAATC
57855245 TTAAACC-CTAAACCATAAACA
1 TTAAACCACTAAACCATAAACA
* *
57855266 TTAAACCTCTAAACCACAAACA
1 TTAAACCACTAAACCATAAACA
* *
57855288 --ACAACCACCAAATCATAAAC-
1 TTA-AACCACTAAACCATAAACA
57855308 TCTAAACC-CTAAA
1 T-TAAACCACTAAA
57855321 ATTGGCCAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
20 1 0.02
21 25 0.57
22 17 0.39
23 1 0.02
ACGTcount: A:0.51, C:0.32, G:0.00, T:0.17
Consensus pattern (22 bp):
TTAAACCACTAAACCATAAACA
Found at i:57855280 original size:22 final size:21
Alignment explanation
Indices: 57855245--57855287 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
57855235 ATCGAAAATC
*
57855245 TTAAACCCTAAACCATAAACA
1 TTAAACCCTAAACCACAAACA
57855266 TTAAACCTCTAAACCACAAACA
1 TTAAACC-CTAAACCACAAACA
57855288 ACAACCACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.51, C:0.30, G:0.00, T:0.19
Consensus pattern (21 bp):
TTAAACCCTAAACCACAAACA
Found at i:57856229 original size:211 final size:213
Alignment explanation
Indices: 57855882--57856418 Score: 708
Period size: 211 Copynumber: 2.5 Consensus size: 213
57855872 GGCGTTTTCA
** * * *
57855882 GGTAAGCGCCGCTAACGACGCTATAGCTAAAGACGAAATGTTGCATTTCGGTTTAAAGTTTTTCG
1 GGTAAGCGCCGCTGTCGACGCTATAGCTCAAGACGAAACGTTGCGTTTCGGTTTAAAGTTTTTCG
* * * * *
57855947 GTGTTTTTTAGTTAAGCACCGCTAATTACGGGATATAGCGGTGTTTTATAGTAAGCGCCGCTAAT
66 GCGTTTTTTAGTTAAGCGCCGCTAATTGCGGGATATAGCGGCGTTTTATAGTAAGCGCCGCTAAC
* * **
57856012 GCCTCTATAGGTCAAGCC-AGAACGATGCATTTTGGTCAAAGTTTTTGTGGCGCTTCT-ACGGAT
131 GCCTCTATAGGTCAAGCCGA-AACGATGCATTTTGGTCAAAATTTTTGAGGCGCTTCTAAAAGAT
57856075 -ATATAGCGG-AG-TTTTTG
195 AATAT-GCGGCAGATTTTTG
**
57856092 GGTAAGTTCCGCTGTCGACGCTATAGCTCAAGACGAAACGTTGCGTTTCGGTTTTAAAGTTTTTC
1 GGTAAGCGCCGCTGTCGACGCTATAGCTCAAGACGAAACGTTGCGTTTCGG-TTTAAAGTTTTTC
* * * *
57856157 GGCATTTTCTAGTTTAGCGCCGCTAATTGCGGGATATAGCGGCGTTTTATAGTAAGCGCTGCTAA
65 GGCGTTTTTTAGTTAAGCGCCGCTAATTGCGGGATATAGCGGCGTTTTATAGTAAGCGCCGCTAA
*
57856222 CGCCTCTATAGGTCAAGCCGAAACGATGCATTTTGGTCAAAATTTTTGAGGCGCTTCTAAAAGCT
130 CGCCTCTATAGGTCAAGCCGAAACGATGCATTTTGGTCAAAATTTTTGAGGCGCTTCTAAAAGAT
*
57856287 AATATGTGGCAGCATTTTTG
195 AATATGCGGCAG-ATTTTTG
* ** *
57856307 GGTAAGCGCCGCTGTCGGCGCTATAGCTCAAGACGAAACGTTTTGTTTTGGTTTAAAG-TTTTCT
1 GGTAAGCGCCGCTGTCGACGCTATAGCTCAAGACGAAACGTTGCGTTTCGGTTTAAAGTTTTTC-
* * * * *
57856371 AGCGTTTTTTAGTTAAGCGTCGCGAATTGTGGGATATATCGGCGTTTT
65 GGCGTTTTTTAGTTAAGCGCCGCTAATTGCGGGATATAGCGGCGTTTT
57856419 CCACAACTGC
Statistics
Matches: 283, Mismatches: 36, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
210 44 0.16
211 123 0.43
212 7 0.02
213 11 0.04
214 47 0.17
215 51 0.18
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (213 bp):
GGTAAGCGCCGCTGTCGACGCTATAGCTCAAGACGAAACGTTGCGTTTCGGTTTAAAGTTTTTCG
GCGTTTTTTAGTTAAGCGCCGCTAATTGCGGGATATAGCGGCGTTTTATAGTAAGCGCCGCTAAC
GCCTCTATAGGTCAAGCCGAAACGATGCATTTTGGTCAAAATTTTTGAGGCGCTTCTAAAAGATA
ATATGCGGCAGATTTTTG
Found at i:57859759 original size:41 final size:40
Alignment explanation
Indices: 57859687--57859845 Score: 122
Period size: 41 Copynumber: 3.9 Consensus size: 40
57859677 TGAAAATAAG
* * * *
57859687 ATGTTTCAGACTTTACGTCCAAGAGGTTTGATGCTGATGAA
1 ATGTTTCAGACTTTATGT-CTAGAGGCTTGATGCCGATGAA
*
57859728 ATGTTTCAGACTTTATGTCTAGTAGGCTTGATGCCGGTGAA
1 ATGTTTCAGACTTTATGTCTAG-AGGCTTGATGCCGATGAA
* ** * *
57859769 TTACTTCAAACTTTATGTCTAGCAGGCTTTG-TGCCGGTGAA
1 ATGTTTCAGACTTTATGTCTAG-AGGC-TTGATGCCGATGAA
* * * * * *
57859810 ATGTATCGGGCTTTGTGCCTAGCAGGCTTTATGCCG
1 ATGTTTCAGACTTTATGTCTAG-AGGCTTGATGCCG
57859846 GTGTTTTATA
Statistics
Matches: 95, Mismatches: 20, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
40 5 0.05
41 87 0.92
42 3 0.03
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (40 bp):
ATGTTTCAGACTTTATGTCTAGAGGCTTGATGCCGATGAA
Found at i:57861703 original size:5 final size:5
Alignment explanation
Indices: 57861693--57861746 Score: 54
Period size: 5 Copynumber: 10.0 Consensus size: 5
57861683 TACTGTTTTA
* *
57861693 AATTT AATTT AATTT AATTT AATGTT CAATTTT AAATA ATATTT AATTT
1 AATTT AATTT AATTT AATTT AAT-TT -AA-TTT AATTT A-ATTT AATTT
57861742 AATTT
1 AATTT
57861747 TTGAAATTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
5 29 0.71
6 7 0.17
7 4 0.10
8 1 0.02
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (5 bp):
AATTT
Found at i:57863407 original size:27 final size:26
Alignment explanation
Indices: 57863369--57863419 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
57863359 TCATAAATAA
*
57863369 ATACGGTTAAAATAT-TGATATTATAGC
1 ATACGGATAAAA-ATGT-ATATTATAGC
57863396 ATACGGATAAAAATGTATATTATA
1 ATACGGATAAAAATGTATATTATA
57863420 TCACACATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.45, C:0.06, G:0.14, T:0.35
Consensus pattern (26 bp):
ATACGGATAAAAATGTATATTATAGC
Found at i:57868704 original size:20 final size:20
Alignment explanation
Indices: 57868679--57868721 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
57868669 ATATTTAAGA
57868679 ATTTTTTAATTAAATTACAT
1 ATTTTTTAATTAAATTACAT
*
57868699 ATTTTTTAATTAAATTATAT
1 ATTTTTTAATTAAATTACAT
57868719 ATT
1 ATT
57868722 ATCTATATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (20 bp):
ATTTTTTAATTAAATTACAT
Found at i:57873170 original size:10 final size:10
Alignment explanation
Indices: 57873152--57873203 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
57873142 ATAAATTAAT
*
57873152 TTTTGTAAAA
1 TTTTATAAAA
57873162 TTTTATAAAAA
1 TTTTAT-AAAA
* *
57873173 TTTAAATTAAA
1 TTT-TATAAAA
57873184 TTTTATAAAA
1 TTTTATAAAA
57873194 TTTTATAAAA
1 TTTTATAAAA
57873204 ATTATTTTCC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
10 20 0.57
11 13 0.37
12 2 0.06
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (10 bp):
TTTTATAAAA
Found at i:57873193 original size:32 final size:32
Alignment explanation
Indices: 57873128--57873206 Score: 124
Period size: 32 Copynumber: 2.5 Consensus size: 32
57873118 TAAAAACAAT
* * *
57873128 AAATTTTATAAAAA-ATAAATTAATTTTTGTA
1 AAATTTTATAAAAATTTAAATTAAATTTTATA
57873159 AAATTTTATAAAAATTTAAATTAAATTTTATA
1 AAATTTTATAAAAATTTAAATTAAATTTTATA
57873191 AAATTTTATAAAAATT
1 AAATTTTATAAAAATT
57873207 ATTTTCCTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
31 14 0.32
32 30 0.68
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (32 bp):
AAATTTTATAAAAATTTAAATTAAATTTTATA
Found at i:57873504 original size:26 final size:27
Alignment explanation
Indices: 57873448--57873499 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
57873438 AACAATGCAT
*
57873448 ATTTATTCTATTTTTTATTGTTTTGAA
1 ATTTATTCTATTTTTTATTGTGTTGAA
*
57873475 ATTTATT-TATTTTTTGTTGATGTTG
1 ATTTATTCTATTTTTTATTG-TGTTG
57873500 CATTTGTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.19, C:0.02, G:0.12, T:0.67
Consensus pattern (27 bp):
ATTTATTCTATTTTTTATTGTGTTGAA
Found at i:57874140 original size:29 final size:29
Alignment explanation
Indices: 57874107--57874165 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
57874097 ACTGAGCTTG
*
57874107 TATAGGCACTTTTCTCAAGCTGGCTCACA
1 TATAGGCACTTTTCTCAAGCTGACTCACA
57874136 TATAGGCACTTTTCTCAAGCTGACTCACA
1 TATAGGCACTTTTCTCAAGCTGACTCACA
57874165 T
1 T
57874166 CCAGCATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.32
Consensus pattern (29 bp):
TATAGGCACTTTTCTCAAGCTGACTCACA
Found at i:57876932 original size:10 final size:10
Alignment explanation
Indices: 57876914--57876965 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
57876904 ATAAATTAAT
*
57876914 TTTTGTAAAA
1 TTTTATAAAA
57876924 TTTTATAAAAA
1 TTTTAT-AAAA
* *
57876935 TTTAAATTAAA
1 TTT-TATAAAA
57876946 TTTTATAAAA
1 TTTTATAAAA
57876956 TTTTATAAAA
1 TTTTATAAAA
57876966 ATTATTTTCC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
10 20 0.57
11 13 0.37
12 2 0.06
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (10 bp):
TTTTATAAAA
Found at i:57876955 original size:32 final size:32
Alignment explanation
Indices: 57876890--57876968 Score: 124
Period size: 32 Copynumber: 2.5 Consensus size: 32
57876880 TAAAAACAAT
* * *
57876890 AAATTTTATAAAAA-ATAAATTAATTTTTGTA
1 AAATTTTATAAAAATTTAAATTAAATTTTATA
57876921 AAATTTTATAAAAATTTAAATTAAATTTTATA
1 AAATTTTATAAAAATTTAAATTAAATTTTATA
57876953 AAATTTTATAAAAATT
1 AAATTTTATAAAAATT
57876969 ATTTTCCTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
31 14 0.32
32 30 0.68
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (32 bp):
AAATTTTATAAAAATTTAAATTAAATTTTATA
Found at i:57877266 original size:26 final size:27
Alignment explanation
Indices: 57877210--57877261 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
57877200 AACAATGCAT
*
57877210 ATTTATTCTATTTTTTATTGTTTTGAA
1 ATTTATTCTATTTTTTATTGTGTTGAA
*
57877237 ATTTATT-TATTTTTTGTTGATGTTG
1 ATTTATTCTATTTTTTATTG-TGTTG
57877262 CATTTGTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.19, C:0.02, G:0.12, T:0.67
Consensus pattern (27 bp):
ATTTATTCTATTTTTTATTGTGTTGAA
Found at i:57881535 original size:21 final size:20
Alignment explanation
Indices: 57881496--57881536 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
57881486 TGTTTCCAAG
* *
57881496 AAAAATAATAAGAATATAGA
1 AAAAAAAATAAGAACATAGA
57881516 AAAAAAAATAAGATACATAGA
1 AAAAAAAATAAGA-ACATAGA
57881537 TAACAAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.71, C:0.02, G:0.10, T:0.17
Consensus pattern (20 bp):
AAAAAAAATAAGAACATAGA
Found at i:57888557 original size:21 final size:21
Alignment explanation
Indices: 57888515--57888558 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
57888505 TTGTTTGTAC
*
57888515 TTAGGTACATTTAGTAGCATT
1 TTAGGTACATTTACTAGCATT
*
57888536 TTAGG-ACATTTCACTAGTATT
1 TTAGGTACATTT-ACTAGCATT
57888557 TT
1 TT
57888559 CATCATTGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.45
Consensus pattern (21 bp):
TTAGGTACATTTACTAGCATT
Found at i:57888821 original size:41 final size:41
Alignment explanation
Indices: 57888776--57888925 Score: 140
Period size: 41 Copynumber: 3.7 Consensus size: 41
57888766 GAAAGCCATA
* * *
57888776 TGACCCACATGGTTTGCCACATGGCCAACCACACGATCATG
1 TGACCCACATGGTCTGCCACACGGCCAACCACACGATCGTG
* * * * * * *
57888817 TGACCCATATAGTCTACCACACGACCTACCACATGATTGTG
1 TGACCCACATGGTCTGCCACACGGCCAACCACACGATCGTG
* ** *
57888858 TGACCCATATGGTCTGTTACACGGCCTACCACACGA-CTGTG
1 TGACCCACATGGTCTGCCACACGGCCAACCACACGATC-GTG
* *
57888899 TGACCTACATGGTCTGCCACATGGCCA
1 TGACCCACATGGTCTGCCACACGGCCA
57888926 TGTGATGTAG
Statistics
Matches: 85, Mismatches: 23, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
41 85 1.00
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (41 bp):
TGACCCACATGGTCTGCCACACGGCCAACCACACGATCGTG
Found at i:57890001 original size:14 final size:13
Alignment explanation
Indices: 57889982--57890031 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 13
57889972 TTAGGTTGTG
57889982 ACAAAAAAAAACTA
1 ACAAAAAAAAA-TA
57889996 ACAAAACAAAAATAA
1 ACAAAA-AAAAAT-A
*
57890011 ACAAATAAAAATA
1 ACAAAAAAAAATA
57890024 ACATAAAA
1 ACA-AAAA
57890032 TCAAGTACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 4 0.13
14 16 0.52
15 11 0.35
ACGTcount: A:0.78, C:0.12, G:0.00, T:0.10
Consensus pattern (13 bp):
ACAAAAAAAAATA
Found at i:57890020 original size:19 final size:19
Alignment explanation
Indices: 57889982--57890020 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
57889972 TTAGGTTGTG
*
57889982 ACAAAAAAAAACTAACAAA
1 ACAAAAAAAAACAAACAAA
* *
57890001 ACAAAAATAAACAAATAAA
1 ACAAAAAAAAACAAACAAA
57890020 A
1 A
57890021 ATAACATAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.79, C:0.13, G:0.00, T:0.08
Consensus pattern (19 bp):
ACAAAAAAAAACAAACAAA
Found at i:57901229 original size:15 final size:16
Alignment explanation
Indices: 57901197--57901255 Score: 50
Period size: 15 Copynumber: 3.7 Consensus size: 16
57901187 TGCAGGAACG
**
57901197 AAAAATTAAAATGTAA
1 AAAAATTAAAATACAA
57901213 AAAAATTAAAA-ACAA
1 AAAAATTAAAATACAA
* *
57901228 AAATATTAAATTA-AA
1 AAAAATTAAAATACAA
57901243 AATAAATATAAAA
1 AA-AAAT-TAAAA
57901256 ATGGCTAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
15 15 0.44
16 15 0.44
17 4 0.12
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (16 bp):
AAAAATTAAAATACAA
Found at i:57904077 original size:321 final size:320
Alignment explanation
Indices: 57903495--57904137 Score: 1067
Period size: 321 Copynumber: 2.0 Consensus size: 320
57903485 ACCGTTCTTT
57903495 TACTGCCTAGCTTGTAACCTCTCAAACCCGTCTGCCAAACTCCAAAACATTATGAGTATAGCTCG
1 TACTGCCTAGCTTGTAACCTCTCAAACCCGTCTGCCAAACTCCAAAACATTATGAGTATAGCTCG
* * *
57903560 ATGTGGTAAAACCACTAAATAATCAATAATGTTGAAAATCTATCGAATATCAAATAGTGCGATAC
66 ATGTGGTAAAACCACTAAATAATCAATAATGCTGAAAATCTATAGAATATCAAATAGTGCGATAA
* * *
57903625 AATCGCTAATAACATATAATATGTGATAAAATTGCCACTCCCCTCGGTACTCCAAGTGCAGTGCA
131 AATAGCTAATAACATATAATATGCGATAAAATCGCCACTCCCCTCGGTACTCCAAGTGCAGTGCA
57903690 CTGACTATGAATAATGCGGACTTAATATGCCACCGATACTCCACAGAACTCCTCCCTCAACCACA
196 CTGACTATGAATAATGCGGACTTAATATGCCACCGATACTCCACAGAACTCCTCCCTCAACCAC-
* *
57903755 AAAATCCCAACCCAATGCATATGCAATATGTCACACTATCTCGTACATAATCATATCTCAA
260 AAAATCCCAACCCAATGCATATGCAATATGTCACACAATCTCATACATAATCATATCTCAA
57903816 TACTGCCTAGCTTGTAACCT-TCCAAACCCGTCTGCCAAACTCCAAAACATTATGAGTATAGCTC
1 TACTGCCTAGCTTGTAACCTCT-CAAACCCGTCTGCCAAACTCCAAAACATTATGAGTATAGCTC
* *
57903880 GATGTGGTAAAACCACTGAATAATCAATAATGCTGAAAATCTGCTAG-ATATCAAATAGTGCGAT
65 GATGTGGTAAAACCACTAAATAATCAATAATGCTGAAAATCT-ATAGAATATCAAATAGTGCGAT
*
57903944 AAAATAGCTAATAACATATAATATGCGATAAAATCGCCACTCCCCTCGGTACTCCAGGTGCAGTG
129 AAAATAGCTAATAACATATAATATGCGATAAAATCGCCACTCCCCTCGGTACTCCAAGTGCAGTG
* ** * ** *
57904009 CACTGACTACT-AATAATGCGTACTTAATATGCCGTCGGTACTCCATGGAACTCCTCCGTCAACC
194 CACTGACTA-TGAATAATGCGGACTTAATATGCCACCGATACTCCACAGAACTCCTCCCTCAACC
57904073 ACAAAATCCCAACCCAATGCATATGCAATATGTCACACAATCTCATACATAATCATATCTCAA
258 ACAAAATCCCAACCCAATGCATATGCAATATGTCACACAATCTCATACATAATCATATCTCAA
57904136 TA
1 TA
57904138 ATTTTCACAT
Statistics
Matches: 301, Mismatches: 18, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
320 62 0.21
321 236 0.78
322 3 0.01
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (320 bp):
TACTGCCTAGCTTGTAACCTCTCAAACCCGTCTGCCAAACTCCAAAACATTATGAGTATAGCTCG
ATGTGGTAAAACCACTAAATAATCAATAATGCTGAAAATCTATAGAATATCAAATAGTGCGATAA
AATAGCTAATAACATATAATATGCGATAAAATCGCCACTCCCCTCGGTACTCCAAGTGCAGTGCA
CTGACTATGAATAATGCGGACTTAATATGCCACCGATACTCCACAGAACTCCTCCCTCAACCACA
AAATCCCAACCCAATGCATATGCAATATGTCACACAATCTCATACATAATCATATCTCAA
Found at i:57907036 original size:21 final size:20
Alignment explanation
Indices: 57907012--57907051 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
57907002 GCCATGACAA
* *
57907012 AATATCCTATATACCAAAATG
1 AATATACTAAATA-CAAAATG
57907033 AATATACTAAATACAAAAT
1 AATATACTAAATACAAAAT
57907052 ACAACCTAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.55, C:0.15, G:0.03, T:0.28
Consensus pattern (20 bp):
AATATACTAAATACAAAATG
Found at i:57913773 original size:27 final size:27
Alignment explanation
Indices: 57913735--57913789 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
57913725 CTAAGCTTTG
57913735 AACCAACTATTCCATTTGATTAACCGA
1 AACCAACTATTCCATTTGATTAACCGA
57913762 AACCAACTATTCCATTTGATTAACCGA
1 AACCAACTATTCCATTTGATTAACCGA
57913789 A
1 A
57913790 CATATCTCAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.29
Consensus pattern (27 bp):
AACCAACTATTCCATTTGATTAACCGA
Found at i:57918593 original size:32 final size:32
Alignment explanation
Indices: 57918557--57918617 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
57918547 AAATAAACAC
57918557 ATAATTATTCATTT-AATA-TTATAACTATTCAA
1 ATAA-TATT-ATTTAAATAGTTATAACTATTCAA
*
57918589 ATAATATTATTTAAATAGTTATAATTATT
1 ATAATATTATTTAAATAGTTATAACTATT
57918618 TTTTCAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 4 0.15
31 8 0.31
32 14 0.54
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (32 bp):
ATAATATTATTTAAATAGTTATAACTATTCAA
Found at i:57918825 original size:16 final size:15
Alignment explanation
Indices: 57918789--57918833 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 15
57918779 TTGTCTTGGT
*
57918789 TCTTCTATTTCTCTTAT
1 TCTT-TATTT-TCTTAA
57918806 TCTTTAATTTTCTTAA
1 TCTTT-ATTTTCTTAA
57918822 TCTTTATTTTCT
1 TCTTTATTTTCT
57918834 AACAGTTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 7 0.27
16 11 0.42
17 8 0.31
ACGTcount: A:0.16, C:0.18, G:0.00, T:0.67
Consensus pattern (15 bp):
TCTTTATTTTCTTAA
Found at i:57929365 original size:44 final size:44
Alignment explanation
Indices: 57929315--57929403 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
57929305 TTGACAATAG
*
57929315 AATATTGTGGTGAAGAAGGGACTCTGTTTTGATTTTCTATACTA
1 AATATTGTGGTGAAGAAGGGACTCTGTTCTGATTTTCTATACTA
57929359 AATATTGTGGTGAAGAAGGGACTCTGTTCTGATTTTCTATACTA
1 AATATTGTGGTGAAGAAGGGACTCTGTTCTGATTTTCTATACTA
57929403 A
1 A
57929404 CTTGAGGAGT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.39
Consensus pattern (44 bp):
AATATTGTGGTGAAGAAGGGACTCTGTTCTGATTTTCTATACTA
Found at i:57933386 original size:13 final size:14
Alignment explanation
Indices: 57933368--57933409 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
57933358 TTTTAATTTC
57933368 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
57933381 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
57933396 ATTTTAAATAATAT
1 ATTTT-AATAATAT
57933410 TCTTCCCATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:57933394 original size:16 final size:16
Alignment explanation
Indices: 57933372--57933408 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
57933362 AATTTCATTT
57933372 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
57933389 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
57933404 TAATA
1 TAATA
57933409 TTCTTCCCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:57933458 original size:18 final size:18
Alignment explanation
Indices: 57933435--57933492 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
57933425 GAAAATACTC
*
57933435 AATATTAATATTTTAATA
1 AATATTAATATTTTAAAA
*
57933453 AATATTCAATA-TTAAAAA
1 AATATT-AATATTTTAAAA
* *
57933471 TAATATTAACATTTTAACA
1 -AATATTAATATTTTAAAA
57933490 AAT
1 AAT
57933493 TCATCCAACT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
18 17 0.53
19 15 0.47
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
AATATTAATATTTTAAAA
Found at i:57933817 original size:9 final size:9
Alignment explanation
Indices: 57933803--57933886 Score: 66
Period size: 9 Copynumber: 9.6 Consensus size: 9
57933793 TATTTATGTA
57933803 TTATGTAAG
1 TTATGTAAG
57933812 TTATGTAAG
1 TTATGTAAG
*
57933821 TTATATAAG
1 TTATGTAAG
* *
57933830 TTATGTTAT
1 TTATGTAAG
*
57933839 TTATGATATG
1 TTATG-TAAG
* * *
57933849 ATATAT-AT
1 TTATGTAAG
57933857 TTATGT-A-
1 TTATGTAAG
57933864 TTATGTAAG
1 TTATGTAAG
*
57933873 TTATGTAAA
1 TTATGTAAG
57933882 TTATG
1 TTATG
57933887 ATCCAAAGTT
Statistics
Matches: 58, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
7 6 0.10
8 6 0.10
9 42 0.72
10 4 0.07
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (9 bp):
TTATGTAAG
Found at i:57933840 original size:43 final size:43
Alignment explanation
Indices: 57933793--57933888 Score: 106
Period size: 43 Copynumber: 2.2 Consensus size: 43
57933783 TGATATGATA
* *
57933793 TATTTATG-TATTATGTA-AGTTATGTAAGTTATATAAGTTATGT
1 TATTTATGATATGATATATAGTTATGT-A-TTATATAAGTTATGT
* *
57933836 TATTTATGATATGATATATATTTATGTATTATGTAAGTTATGT
1 TATTTATGATATGATATATAGTTATGTATTATATAAGTTATGT
* *
57933879 AAATTATGAT
1 TATTTATGAT
57933889 CCAAAGTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
43 30 0.67
44 8 0.18
45 7 0.16
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (43 bp):
TATTTATGATATGATATATAGTTATGTATTATATAAGTTATGT
Found at i:57933903 original size:61 final size:64
Alignment explanation
Indices: 57933759--57933903 Score: 178
Period size: 61 Copynumber: 2.3 Consensus size: 64
57933749 TTATATGTTT
* * *
57933759 TGATCCAAAGTTTTATTTAAGTTATGATATGATATATTTATGTATTATGTAAGTTATGTAAGTTA
1 TGATCCAAAGTTTTATTTATGATATGA-ATGATATATTTATGTATTATGTAAGTTATGTAAATTA
57933824 T-AT---AAGTTATGTTATTTATGATATG-AT-ATATATTTATGTATTATGTAAGTTATGTAAAT
1 TGATCCAAAG-T-T-TTATTTATGATATGAATGATATATTTATGTATTATGTAAGTTATGTAAAT
57933883 TA
63 TA
57933885 TGATCCAAAGTTTT-TTTAT
1 TGATCCAAAGTTTTATTTAT
57933904 TCTTTAAATG
Statistics
Matches: 70, Mismatches: 3, Indels: 18
0.77 0.03 0.20
Matches are distributed among these distances:
61 42 0.60
62 7 0.10
63 2 0.03
64 15 0.21
65 4 0.06
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.50
Consensus pattern (64 bp):
TGATCCAAAGTTTTATTTATGATATGAATGATATATTTATGTATTATGTAAGTTATGTAAATTA
Found at i:57933955 original size:13 final size:13
Alignment explanation
Indices: 57933937--57933963 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
57933927 TAATTATCAT
57933937 CTTTAAATTTTAA
1 CTTTAAATTTTAA
57933950 CTTTAAATTTTAA
1 CTTTAAATTTTAA
57933963 C
1 C
57933964 CCTTTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (13 bp):
CTTTAAATTTTAA
Found at i:57935830 original size:9 final size:10
Alignment explanation
Indices: 57935808--57935836 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
57935798 TATAAATAAT
57935808 AAATAAACAA
1 AAATAAACAA
57935818 AAATAAA-AA
1 AAATAAACAA
57935827 AAATAAACAA
1 AAATAAACAA
57935837 TGACAATGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.83, C:0.07, G:0.00, T:0.10
Consensus pattern (10 bp):
AAATAAACAA
Found at i:57936258 original size:31 final size:31
Alignment explanation
Indices: 57936223--57936281 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
57936213 GTGCACGTGC
* *
57936223 ATATATAGATTATGAAAA-TAATAATAATTAT
1 ATATATAAATTAT-AAAAGTAAAAATAATTAT
57936254 ATATATAAATTATAAAAGTAAAAATAAT
1 ATATATAAATTATAAAAGTAAAAATAAT
57936282 AATTACATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 4 0.16
31 21 0.84
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (31 bp):
ATATATAAATTATAAAAGTAAAAATAATTAT
Found at i:57937939 original size:44 final size:44
Alignment explanation
Indices: 57937891--57938001 Score: 109
Period size: 44 Copynumber: 2.5 Consensus size: 44
57937881 CTAATACACT
* * * *
57937891 CCACTACAACTTTAGGGAGATAGGATTTGTTTATTC-TGTCTACC
1 CCACTGCAACTTTAGGGAGATA-GACTTGGTTATTCGGGTCTACC
* * *
57937935 CCACTGCAA-TTTCAGGGGGATTAGACTTGGTTATTCGGGTCTGCT
1 CCACTGCAACTTT-AGGGAGA-TAGACTTGGTTATTCGGGTCTACC
*
57937980 CCACTGCAACTTTAGAGAGATA
1 CCACTGCAACTTTAGGGAGATA
57938002 ATATATGTTT
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
43 3 0.06
44 27 0.50
45 21 0.39
46 3 0.06
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (44 bp):
CCACTGCAACTTTAGGGAGATAGACTTGGTTATTCGGGTCTACC
Found at i:57938069 original size:44 final size:43
Alignment explanation
Indices: 57937974--57938308 Score: 230
Period size: 44 Copynumber: 7.8 Consensus size: 43
57937964 GTTATTCGGG
* * *
57937974 TCTGCTCCACTGCAACTTTAGAGAGATA--A-TATATGTTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATTAT-TGCTTTAA
* *
57938015 TCCGCTCCACTGCAACTTCAGGGACATAGGATTATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATTATT-GCTTTAA
* *
57938059 TCTGCTCCACTGCAACTTCAAGGAGAT-GAGATTCGCCA-T-CTTTAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAG-GATT----ATTGCTTTAA
*
57938104 TCTGC-CTCACTGCAACTTCAGGGGGATA--A-TACTTGCTTACTCAA
1 TCTGCTC-CACTGCAACTTCAGGGAGATAGGATTA-TTGCTT--T-AA
* ** * *
57938148 TCTGCTCCACTGCAACTTCAGGGAGATAAGACAAGATGC---GA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATTA-TTGCTTTAA
* * * * *
57938189 TCTGCT-CTCTGCAACTTTAGAGAGATAAGATCTATTACTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGAT-TATTGCTTTAA
* *
57938232 TCCGCTCCACTGCAACTTTAGGGAGATAGGATTATTGACTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATTATTG-CTTTAA
* * *
57938276 TCTACTCCACTGCAACTTCAAGGAGATAAGATT
1 TCTGCTCCACTGCAACTTCAGGGAGATAGGATT
57938309 CGCCATCTTC
Statistics
Matches: 232, Mismatches: 35, Indels: 51
0.73 0.11 0.16
Matches are distributed among these distances:
38 1 0.00
40 24 0.10
41 35 0.15
42 1 0.00
43 15 0.06
44 120 0.52
45 29 0.12
46 1 0.00
47 5 0.02
48 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (43 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAGGATTATTGCTTTAA
Found at i:57938492 original size:50 final size:50
Alignment explanation
Indices: 57938338--57938522 Score: 142
Period size: 50 Copynumber: 3.7 Consensus size: 50
57938328 AACTGGAAAC
* * *
57938338 AAGATTCGCCGTCGTAGCTTCAACCTGTTCCACTACA-CTTCCAGGGGAGT
1 AAGATTCGCCGTCGCAGCTTCAATCTGTTCCACTACATC-GCCAGGGGAGT
* * * ** * * ** **
57938388 AAGATTCGCCGTTGCAGCTTCAGTCTTTTTAATTGCAAT-G-TTGGGGAAAC
1 AAGATTCGCCGTCGCAGCTTCAATCTGTTCCACTAC-ATCGCCAGGGG-AGT
* *
57938438 AAGATTCCCCGTCGTAGCTTCAATCTGTTCCACTACATCGCCAGGGGAGT
1 AAGATTCGCCGTCGCAGCTTCAATCTGTTCCACTACATCGCCAGGGGAGT
* * *
57938488 AAGATTCGCCATTGCAGCTTTCAATCTGCTCCACT
1 AAGATTCGCCGTCGCAGC-TTCAATCTGTTCCACT
57938523 GTAATGCCAA
Statistics
Matches: 97, Mismatches: 32, Indels: 11
0.69 0.23 0.08
Matches are distributed among these distances:
49 6 0.06
50 71 0.73
51 20 0.21
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (50 bp):
AAGATTCGCCGTCGCAGCTTCAATCTGTTCCACTACATCGCCAGGGGAGT
Found at i:57939688 original size:25 final size:26
Alignment explanation
Indices: 57939660--57939708 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
57939650 AGTGTCTTGA
57939660 AAAGAAAAAAGTA-TTCAAGAACAGT
1 AAAGAAAAAAGTATTTCAAGAACAGT
*
57939685 AAAGAATAAAGTATTTCAAGAACA
1 AAAGAAAAAAGTATTTCAAGAACA
57939709 AACAAATTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.59, C:0.08, G:0.14, T:0.18
Consensus pattern (26 bp):
AAAGAAAAAAGTATTTCAAGAACAGT
Found at i:57941707 original size:27 final size:27
Alignment explanation
Indices: 57941660--57941899 Score: 283
Period size: 27 Copynumber: 8.9 Consensus size: 27
57941650 GGGTATACCA
* *
57941660 GTCATT-TTCCCTATGGGGGTATTTCG
1 GTCATTCTACCCTATAGGGGTATTTCG
* * *
57941686 TTCATAT-TACTCTATAGGGGTATTTTG
1 GTCAT-TCTACCCTATAGGGGTATTTCG
*
57941713 GTCATTCTACCTTATAGGGGTATTTCG
1 GTCATTCTACCCTATAGGGGTATTTCG
*
57941740 GTCATTTTACCCTATAGGGGTATTTCG
1 GTCATTCTACCCTATAGGGGTATTTCG
* * *
57941767 ATCATTCTACCCTAT-GAGGATATTTTG
1 GTCATTCTACCCTATAG-GGGTATTTCG
* *
57941794 GTCATTCTACCCTATGGGGGTATTTTG
1 GTCATTCTACCCTATAGGGGTATTTCG
*
57941821 ATCATTCTACCCTATAGGGGTATTTCG
1 GTCATTCTACCCTATAGGGGTATTTCG
57941848 GTCATTCTACCCTAT-GAGGGTATTTCG
1 GTCATTCTACCCTATAG-GGGTATTTCG
*
57941875 ATCATTCTACCCTAT-GAGGGTATTT
1 GTCATTCTACCCTATAG-GGGTATTT
57941900 TAGTTATTTT
Statistics
Matches: 187, Mismatches: 22, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
26 7 0.04
27 179 0.96
28 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.41
Consensus pattern (27 bp):
GTCATTCTACCCTATAGGGGTATTTCG
Found at i:57941792 original size:81 final size:80
Alignment explanation
Indices: 57941660--57941899 Score: 315
Period size: 81 Copynumber: 3.0 Consensus size: 80
57941650 GGGTATACCA
* * *
57941660 GTCATTTT-CCCTATGGGGGTATTTCGTTCATAT-TACTCTAT-AGGGGTATTTTGGTCATTCTA
1 GTCATTTTACCCTATAGGGGTATTTCGATCAT-TCTACCCTATGA-GGGTATTTTGGTCATTCTA
*
57941722 CCTTATAGGGGTATTTCG
64 CCCTAT-GGGGTATTTCG
*
57941740 GTCATTTTACCCTATAGGGGTATTTCGATCATTCTACCCTATGAGGATATTTTGGTCATTCTACC
1 GTCATTTTACCCTATAGGGGTATTTCGATCATTCTACCCTATGAGGGTATTTTGGTCATTCTACC
*
57941805 CTATGGGGGTATTTTG
66 CTAT-GGGGTATTTCG
* * * * *
57941821 ATCATTCTACCCTATAGGGGTATTTCGGTCATTCTACCCTATGAGGGTATTTCGATCATTCTACC
1 GTCATTTTACCCTATAGGGGTATTTCGATCATTCTACCCTATGAGGGTATTTTGGTCATTCTACC
57941886 CTATGAGGGTATTT
66 CTATG-GGGTATTT
57941900 TAGTTATTTT
Statistics
Matches: 143, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
80 10 0.07
81 132 0.92
82 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.41
Consensus pattern (80 bp):
GTCATTTTACCCTATAGGGGTATTTCGATCATTCTACCCTATGAGGGTATTTTGGTCATTCTACC
CTATGGGGTATTTCG
Found at i:57947132 original size:17 final size:19
Alignment explanation
Indices: 57947105--57947144 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
57947095 TAAATCAAAA
57947105 TTTTATATATTTTT-TCTT
1 TTTTATATATTTTTCTCTT
57947123 TTTTAT-TATTTTTCTCTT
1 TTTTATATATTTTTCTCTT
57947141 TTTT
1 TTTT
57947145 TAGAGAGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTATATATTTTTCTCTT
Found at i:57947134 original size:16 final size:19
Alignment explanation
Indices: 57947105--57947143 Score: 57
Period size: 16 Copynumber: 2.2 Consensus size: 19
57947095 TAAATCAAAA
57947105 TTTTATATATTTTTTCT-T
1 TTTTATATATTTTTTCTCT
57947123 TTTTAT-TA-TTTTTCTCT
1 TTTTATATATTTTTTCTCT
57947140 TTTT
1 TTTT
57947144 TTAGAGAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 7 0.35
17 7 0.35
18 6 0.30
ACGTcount: A:0.13, C:0.08, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTATATATTTTTTCTCT
Found at i:57952672 original size:11 final size:11
Alignment explanation
Indices: 57952645--57952705 Score: 51
Period size: 11 Copynumber: 5.9 Consensus size: 11
57952635 CAAAATATTG
57952645 AAAAAAA-A-C
1 AAAAAAATAGC
57952654 AAAAAAATAGC
1 AAAAAAATAGC
57952665 AAAAAAATA-C
1 AAAAAAATAGC
*
57952675 ATATAAAATAGC
1 A-AAAAAATAGC
* *
57952687 --AAGAATAGT
1 AAAAAAATAGC
57952696 AAAAAAATAG
1 AAAAAAATAG
57952706 TTTTTTCTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
9 13 0.32
10 3 0.07
11 24 0.59
12 1 0.02
ACGTcount: A:0.72, C:0.07, G:0.08, T:0.13
Consensus pattern (11 bp):
AAAAAAATAGC
Found at i:57952682 original size:22 final size:20
Alignment explanation
Indices: 57952645--57952688 Score: 61
Period size: 22 Copynumber: 2.1 Consensus size: 20
57952635 CAAAATATTG
57952645 AAAAAAAACAAAAAAATAGC
1 AAAAAAAACAAAAAAATAGC
*
57952665 AAAAAAATACATATAAAATAGC
1 AAAAAAA-ACA-AAAAAATAGC
57952687 AA
1 AA
57952689 GAATAGTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.33
21 3 0.14
22 11 0.52
ACGTcount: A:0.75, C:0.09, G:0.05, T:0.11
Consensus pattern (20 bp):
AAAAAAAACAAAAAAATAGC
Found at i:57962032 original size:22 final size:22
Alignment explanation
Indices: 57962004--57962048 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
57961994 AAGAAAAATT
*
57962004 AAAATGTAAAAATTAAATTAAA
1 AAAATGTAAAAATTAAAATAAA
*
57962026 AAAATGTTAAAATTAAAATAAA
1 AAAATGTAAAAATTAAAATAAA
57962048 A
1 A
57962049 TTAGTTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (22 bp):
AAAATGTAAAAATTAAAATAAA
Found at i:57962058 original size:20 final size:18
Alignment explanation
Indices: 57962016--57962067 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
57962006 AATGTAAAAA
57962016 TTAAATT-AAA-AAAATG
1 TTAAATTAAAATAAAATG
57962032 TTAAAATTAAAATAAAATTAG
1 TT-AAATTAAAATAAAA-T-G
*
57962053 TTAAATTAATATAAA
1 TTAAATTAAAATAAA
57962068 TAAAATTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
16 2 0.07
17 5 0.17
18 3 0.10
19 4 0.13
20 13 0.43
21 3 0.10
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (18 bp):
TTAAATTAAAATAAAATG
Found at i:57964017 original size:128 final size:128
Alignment explanation
Indices: 57963851--57964244 Score: 664
Period size: 128 Copynumber: 3.1 Consensus size: 128
57963841 TCATTTTCTA
*
57963851 ACACCACTAATTTTAGGGTCGTTACACTTGTACCTTAGTTAACTATCCAATTGTCAAAATTAAAA
1 ACACCACTGATTTTAGGGTCGTTACACTTGTACCTTAGTTAACTATCCAATTGTCAAAATTAAAA
*
57963916 GGCCAAACTTTAATTAAACTTTATACTAACCTCGGAAATGGGTTTCCAAAATCACCGTTTTCG
66 GACCAAACTTTAATTAAACTTTATACTAACCTCGGAAATGGGTTTCCAAAATCACCGTTTTCG
* *
57963979 ACACTACTGATTTTAGGGTCGTTACACTTGTACTTTAGTTAACTATCCAATTGTCAAAATTAAAA
1 ACACCACTGATTTTAGGGTCGTTACACTTGTACCTTAGTTAACTATCCAATTGTCAAAATTAAAA
* * *
57964044 GACCAAACTTTAATTAAACTTTATACTAACTTTGGAAATGGGTTTCCAAAATTACCGTTTTCG
66 GACCAAACTTTAATTAAACTTTATACTAACCTCGGAAATGGGTTTCCAAAATCACCGTTTTCG
* *
57964107 ACACCACT-AGCTTTACGGTCGTTACACTTGTACCTTAGTTAACTATCCAATTGTCAAAATTAAA
1 ACACCACTGA-TTTTAGGGTCGTTACACTTGTACCTTAGTTAACTATCCAATTGTCAAAATTAAA
** *
57964171 AGACCAAACTTTAATTAAACTTTATACTAACCTCAAAAATGGATTTCCAAAATCACCGTTTTCG
65 AGACCAAACTTTAATTAAACTTTATACTAACCTCGGAAATGGGTTTCCAAAATCACCGTTTTCG
57964235 ACACCACTGA
1 ACACCACTGA
57964245 CTTTCGAGTC
Statistics
Matches: 247, Mismatches: 17, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
127 1 0.00
128 245 0.99
129 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33
Consensus pattern (128 bp):
ACACCACTGATTTTAGGGTCGTTACACTTGTACCTTAGTTAACTATCCAATTGTCAAAATTAAAA
GACCAAACTTTAATTAAACTTTATACTAACCTCGGAAATGGGTTTCCAAAATCACCGTTTTCG
Found at i:57964824 original size:14 final size:14
Alignment explanation
Indices: 57964807--57964840 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
57964797 CTATAAAATA
57964807 TACATAAAATATAC
1 TACATAAAATATAC
57964821 TACATAAAATATAC
1 TACATAAAATATAC
57964835 TACATA
1 TACATA
57964841 GTAGAGTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.29
Consensus pattern (14 bp):
TACATAAAATATAC
Found at i:57970370 original size:21 final size:21
Alignment explanation
Indices: 57970338--57970378 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
57970328 GAACATTTGG
57970338 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
57970359 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
57970379 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:57974633 original size:15 final size:15
Alignment explanation
Indices: 57974613--57974643 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
57974603 CATGTGTCTC
*
57974613 ATGTATGCTTAGTGG
1 ATGTATACTTAGTGG
57974628 ATGTATACTTAGTGG
1 ATGTATACTTAGTGG
57974643 A
1 A
57974644 GATATGATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.06, G:0.29, T:0.39
Consensus pattern (15 bp):
ATGTATACTTAGTGG
Found at i:57979565 original size:102 final size:101
Alignment explanation
Indices: 57979393--57980188 Score: 863
Period size: 110 Copynumber: 7.6 Consensus size: 101
57979383 TAAAAAACAC
* * * *
57979393 AAAAAA-TACATTTATAATAAGTCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAA
1 AAAAAATTACATTCATAAAAAATCACAAAAAACACTAAACTAAACACAAACAATTTATAACCTAA
57979457 TCATAAATTACTAACAAAATAACTTTAAAAAAATTA
66 TCATAAATTACTAACAAAATAACTTTAAAAAAATTA
* *
57979493 AAAAAATTTACATTCATAAAAAATCACAATAAACACTAAACTAAGCACAAACAATTTATAACCTA
1 AAAAAA-TTACATTCATAAAAAATCACAAAAAACACTAAACTAAACACAAACAATTTATAACCTA
* **
57979558 ATGATAAATTACTAACAAAATAACTTTCAAATAATTAAAAA
65 ATCATAAATTACTAACAAAATAACTTT-AAA-AA--AATTA
** * * * *
57979599 AAACAAAAAAAATAT-ATTCATAAAAAATCACAATAAACATTAAACTAATCACAAACAATTTATA
1 AAA-AAATTACAT-TCA-T-A-AAAA-ATCACAAAAAACACTAAACTAAACACAAACAATTTATA
* * * *
57979663 ACCTAACCATAAATTACTAAGAAAATGACTTTAAAATAATTTTA
60 ACCTAATCATAAATTACTAACAAAATAACTTTAAAA-AA-ATTA
57979707 AAAAAATTACATTCATAAAAAATCAC--AAAACACTAAACTAAACACAAACAATTTATAACCTAA
1 AAAAAATTACATTCATAAAAAATCACAAAAAACACTAAACTAAACACAAACAATTTATAACCTAA
57979770 TCATAAATTACTAACAAAATAACTTTAAAAAAATTTA
66 TCATAAATTACTAACAAAATAACTTTAAAAAAA-TTA
*
57979807 AAAAAATTTACATTCATAAAAAATCACAAAAAACACTAAACTAAGCACAAACAATTTATAACCTA
1 AAAAAA-TTACATTCATAAAAAATCACAAAAAACACTAAACTAAACACAAACAATTTATAACCTA
* **
57979872 ATGATAAATTACTAACAAAATAACTTTCAAATAATTAAAAA
65 ATCATAAATTACTAACAAAATAACTTT-AAA-AA--AATTA
** * * * *
57979913 AAACAAAAAAAATAT-ATTCATAAAAAATCACAATAAACATTAAACTAATCACAAACAATTTATA
1 AAA-AAATTACAT-TCA-T-A-AAAA-ATCACAAAAAACACTAAACTAAACACAAACAATTTATA
* * * *
57979977 ACCTAACCATAAATTACTAAGAAAATGACTTTAAAATAATTTTA
60 ACCTAATCATAAATTACTAACAAAATAACTTTAAAA-AA-ATTA
57980021 AAAAAATTACATTCATAAAAAATCAC--AAAACACTAAACTAAACACAAACAATTTATAACCTAA
1 AAAAAATTACATTCATAAAAAATCACAAAAAACACTAAACTAAACACAAACAATTTATAACCTAA
57980084 TCATAAATTACTAACAAAATAACTTTCAAATAATTAAAATAAAATA
66 TCATAAATTACTAACAAAATAACTTT---A-AA--AAAAT----TA
* * *
57980130 AAAAATTTTACATTCATAAAAAAT-A-ACAAAACACTAAACTAAACACAAATAATTTATAA
1 AAAAA-ATTACATTCATAAAAAATCACAAAAAACACTAAACTAAACACAAACAATTTATAA
57980189 TAATTGATAA
Statistics
Matches: 593, Mismatches: 58, Indels: 80
0.81 0.08 0.11
Matches are distributed among these distances:
100 17 0.03
101 138 0.23
102 79 0.13
103 74 0.12
104 14 0.02
105 7 0.01
106 24 0.04
107 29 0.05
108 12 0.02
109 24 0.04
110 175 0.30
ACGTcount: A:0.58, C:0.15, G:0.01, T:0.26
Consensus pattern (101 bp):
AAAAAATTACATTCATAAAAAATCACAAAAAACACTAAACTAAACACAAACAATTTATAACCTAA
TCATAAATTACTAACAAAATAACTTTAAAAAAATTA
Found at i:57979570 original size:211 final size:205
Alignment explanation
Indices: 57979393--57980188 Score: 985
Period size: 211 Copynumber: 3.8 Consensus size: 205
57979383 TAAAAAACAC
* * *
57979393 AAAAAATACATTTATAATAAGTCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAAT
1 AAAAAATACATTCATAAAAAATCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAAT
57979458 CATAAATTACTAACAAAATAACTTTAAAAAAATTAAAAAAATTTACATTCATAAAAAATCACAAT
66 CATAAATTACTAACAAAATAACTTTAAAAAAATTAAAAAAATTTACATTCATAAAAAATCACAAT
* * *
57979523 AAACACTAAACTAAGCACAAACAATTTATAACCTAATGATAAATTACTAACAAAATAACTTTCAA
131 AAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTTTAAA
*
57979588 ATAATTAAAAAAAACAA
196 ATAATT------TA-AA
* * * *
57979605 AAAAAATATATTCATAAAAAATCACAATAAACATTAAACTAATCACAAACAATTTATAACCTAAC
1 AAAAAATACATTCATAAAAAATCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAAT
* * *
57979670 CATAAATTACTAAGAAAATGACTTTAAAATAATTTTAAAAAAA-TTACATTCATAAAAAATCAC-
66 CATAAATTACTAACAAAATAACTTTAAAA-AA-ATTAAAAAAATTTACATTCATAAAAAATCACA
57979733 A-AAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTTTA
129 ATAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTTTA
*
57979797 AAAAAATTTAAA
194 AAATAATTTAAA
** * *
57979809 AAAATTTACATTCATAAAAAATCACAAAAAACACTAAACTAAGCACAAACAATTTATAACCTAAT
1 AAAAAATACATTCATAAAAAATCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAAT
* ** ** *
57979874 GATAAATTACTAACAAAATAACTTTCAAATAATTAAAAAAAACAAAAAAAATATATTCATAAAAA
66 CATAAATTACTAACAAAATAAC-TT----TAA--AAAAATTA-AAAAAATTTACATTCATAAAAA
* * * * *
57979939 ATCACAATAAACATTAAACTAATCACAAACAATTTATAACCTAACCATAAATTACTAAGAAAATG
123 ATCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATA
*
57980004 ACTTTAAAATAATTTTAA
188 ACTTTAAAATAATTTAAA
*
57980022 AAAAATTACATTCATAAAAAATCAC-A-AAACACTAAACTAAACACAAACAATTTATAACCTAAT
1 AAAAAATACATTCATAAAAAATCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAAT
*
57980085 CATAAATTACTAACAAAATAACTTTCAAATAATTAAAATAAAATAAAAAATTTTACATTCATAAA
66 CATAAATTACTAACAAAATAACTTT---A-AA--AAAAT----TAAAAAAATTTACATTCATAAA
* *
57980150 AAATAAC-A-AAACACTAAACTAAACACAAATAATTTATAA
121 AAATCACAATAAACACTAAACTAAACACAAACAATTTATAA
57980189 TAATTGATAA
Statistics
Matches: 511, Mismatches: 50, Indels: 47
0.84 0.08 0.08
Matches are distributed among these distances:
204 79 0.15
205 3 0.01
206 1 0.00
208 1 0.00
209 5 0.01
210 15 0.03
211 172 0.34
212 89 0.17
213 136 0.27
214 10 0.02
ACGTcount: A:0.58, C:0.15, G:0.01, T:0.26
Consensus pattern (205 bp):
AAAAAATACATTCATAAAAAATCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAAT
CATAAATTACTAACAAAATAACTTTAAAAAAATTAAAAAAATTTACATTCATAAAAAATCACAAT
AAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTTTAAA
ATAATTTAAA
Found at i:57979607 original size:110 final size:108
Alignment explanation
Indices: 57979481--57980188 Score: 891
Period size: 110 Copynumber: 6.6 Consensus size: 108
57979471 CAAAATAACT
*
57979481 TTAAAAAAATTAAAAAAATTTACATTCATAAAAAATCACAATAAACACTAAACTAAGCACAAACA
1 TTAAAAAAA--AAAAAAATTTACATTCATAAAAAATCACAA-AAACACTAAACTAAACACAAACA
*
57979546 ATTTATAACCTAATGATAAATTACTAACAAAATAACTTTCAAATAA
63 ATTTATAACCTAATCATAAATTACTAACAAAATAACTTTCAAATAA
** * * *
57979592 TTAAAAAAAACAAAAAAAATATATTCATAAAAAATCACAATAAACATTAAACTAATCACAAACAA
1 TTAAAAAAAA-AAAAAATTTACATTCATAAAAAATCACAA-AAACACTAAACTAAACACAAACAA
* * * *
57979657 TTTATAACCTAACCATAAATTACTAAGAAAATGACTTTAAAATAA
64 TTTATAACCTAATCATAAATTACTAACAAAATAACTTTCAAATAA
**
57979702 TT-----TTAAAAAAA-TTACATTCATAAAAAATCAC-AAAACACTAAACTAAACACAAACAATT
1 TTAAAAAAAAAAAAAATTTACATTCATAAAAAATCACAAAAACACTAAACTAAACACAAACAATT
57979760 TATAACCTAATCATAAATTACTAACAAAATAACTTT---A-AA
66 TATAACCTAATCATAAATTACTAACAAAATAACTTTCAAATAA
*** *
57979799 --AAAATTTAAAAAAATTTACATTCATAAAAAATCACAAAAAACACTAAACTAAGCACAAACAAT
1 TTAAAAAAAAAAAAAATTTACATTCATAAAAAATCAC-AAAAACACTAAACTAAACACAAACAAT
*
57979862 TTATAACCTAATGATAAATTACTAACAAAATAACTTTCAAATAA
65 TTATAACCTAATCATAAATTACTAACAAAATAACTTTCAAATAA
** * * *
57979906 TTAAAAAAAACAAAAAAAATATATTCATAAAAAATCACAATAAACATTAAACTAATCACAAACAA
1 TTAAAAAAAA-AAAAAATTTACATTCATAAAAAATCACAA-AAACACTAAACTAAACACAAACAA
* * * *
57979971 TTTATAACCTAACCATAAATTACTAAGAAAATGACTTTAAAATAA
64 TTTATAACCTAATCATAAATTACTAACAAAATAACTTTCAAATAA
**
57980016 TT-----TTAAAAAAA-TTACATTCATAAAAAATCAC-AAAACACTAAACTAAACACAAACAATT
1 TTAAAAAAAAAAAAAATTTACATTCATAAAAAATCACAAAAACACTAAACTAAACACAAACAATT
57980074 TATAACCTAATCATAAATTACTAACAAAATAACTTTCAAATAA
66 TATAACCTAATCATAAATTACTAACAAAATAACTTTCAAATAA
* *
57980117 TTAAAATAAAATAAAAAATTTTACATTCATAAAAAATAAC-AAAACACTAAACTAAACACAAATA
1 TTAAAA-AAAA-AAAAAA-TTTACATTCATAAAAAATCACAAAAACACTAAACTAAACACAAACA
57980181 ATTTATAA
63 ATTTATAA
57980189 TAATTGATAA
Statistics
Matches: 523, Mismatches: 48, Indels: 53
0.84 0.08 0.08
Matches are distributed among these distances:
97 2 0.00
98 1 0.00
100 9 0.02
101 142 0.27
102 2 0.00
103 97 0.19
104 12 0.02
105 2 0.00
106 1 0.00
107 3 0.01
108 6 0.01
109 8 0.02
110 229 0.44
111 9 0.02
ACGTcount: A:0.59, C:0.15, G:0.01, T:0.26
Consensus pattern (108 bp):
TTAAAAAAAAAAAAAATTTACATTCATAAAAAATCACAAAAACACTAAACTAAACACAAACAATT
TATAACCTAATCATAAATTACTAACAAAATAACTTTCAAATAA
Found at i:57979698 original size:101 final size:100
Alignment explanation
Indices: 57979592--57980188 Score: 662
Period size: 101 Copynumber: 5.7 Consensus size: 100
57979582 TTTCAAATAA
** * * * *
57979592 TTAAAAAAAACAAAAAAAATATATTCATAAAAAATCACAATAAACATTAAACTAATCACAAACAA
1 TTAAAAAAATTAAAAAAATTACATTCATAAAAAATCACAA-AAACACTAAACTAAACACAAACAA
* * *
57979657 TTTATAACCTAACCATAAATTACTAAGAAAATGACT
65 TTTATAACCTAATCATAAATTACTAACAAAATAACT
*
57979693 TTAAAATAATTTTAAAAAAATTACATTCATAAAAAATCAC-AAAACACTAAACTAAACACAAACA
1 TTAAAA-AA-ATTAAAAAAATTACATTCATAAAAAATCACAAAAACACTAAACTAAACACAAACA
57979757 ATTTATAACCTAATCATAAATTACTAACAAAATAACT
64 ATTTATAACCTAATCATAAATTACTAACAAAATAACT
*
57979794 TTAAAAAAATTTAAAAAAATTTACATTCATAAAAAATCACAAAAAACACTAAACTAAGCACAAAC
1 TTAAAAAAA-TTAAAAAAA-TTACATTCATAAAAAATCAC-AAAAACACTAAACTAAACACAAAC
*
57979859 AATTTATAACCTAATGATAAATTACTAACAAAATAACT
63 AATTTATAACCTAATCATAAATTACTAACAAAATAACT
** ** * *
57979897 TTCAAATAATTAAAAAAAACAAAAAAAATAT-ATTCATAAAAAATCACAATAAACATTAAACTAA
1 TT-AAA-AA--AATTAAAA-AAATTACAT-TCA-T-A-AAAA-ATCACAA-AAACACTAAACTAA
* * * *
57979961 TCACAAACAATTTATAACCTAACCATAAATTACTAAGAAAATGACT
55 ACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACT
*
57980007 TTAAAATAATTTTAAAAAAATTACATTCATAAAAAATCAC-AAAACACTAAACTAAACACAAACA
1 TTAAAA-AA-ATTAAAAAAATTACATTCATAAAAAATCACAAAAACACTAAACTAAACACAAACA
57980071 ATTTATAACCTAATCATAAATTACTAACAAAATAACT
64 ATTTATAACCTAATCATAAATTACTAACAAAATAACT
* *
57980108 TTCAAATAATTAAAATAAAATAAAAAATTTTACATTCATAAAAAATAAC-AAAACACTAAACTAA
1 TT---A-AA--AAAAT----TAAAAAA-ATTACATTCATAAAAAATCACAAAAACACTAAACTAA
*
57980172 ACACAAATAATTTATAA
55 ACACAAACAATTTATAA
57980189 TAATTGATAA
Statistics
Matches: 426, Mismatches: 39, Indels: 53
0.82 0.08 0.10
Matches are distributed among these distances:
100 11 0.03
101 144 0.34
102 4 0.01
103 91 0.21
104 8 0.02
105 6 0.01
106 12 0.03
107 16 0.04
108 6 0.01
109 17 0.04
110 111 0.26
ACGTcount: A:0.59, C:0.15, G:0.01, T:0.26
Consensus pattern (100 bp):
TTAAAAAAATTAAAAAAATTACATTCATAAAAAATCACAAAAACACTAAACTAAACACAAACAAT
TTATAACCTAATCATAAATTACTAACAAAATAACT
Found at i:57979868 original size:314 final size:314
Alignment explanation
Indices: 57979298--57980188 Score: 1412
Period size: 314 Copynumber: 2.8 Consensus size: 314
57979288 AATTTACATT
* * * * * * * *
57979298 ATAACAAATCACAATACACATTAAACTAA-AAAAAATAATTTATAATCAAATCATAAATTACTAA
1 ATAAAAAATCACAATAAACATTAAACTAATCACAAACAATTTATAACCTAACCATAAATTACTAA
* * * * * * *
57979362 CAAAATAACTTTAAAATAATTTAAAAAACACAAAAAATACATTTATAATAAGTCACAATAAACAC
66 GAAAATGACTTTAAAATAATTT----TA-A-AAAAATTACATTCATAAAAAATCAC-A-AAACAC
57979427 TAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTTTAAAAAAA-T
123 TAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTTTAAAAAAATT
*
57979491 TAAAAAAATTTACATTCATAAAAAATCACAATAAACACTAAACTAAGCACAAACAATTTATAACC
188 TAAAAAAATTTACATTCATAAAAAATCACAAAAAACACTAAACTAAGCACAAACAATTTATAACC
57979556 TAATGATAAATTACTAACAAAATAACTTTCAAATAATTAAAAAAAACAAAAAAAATATATTC
253 TAATGATAAATTACTAACAAAATAACTTTCAAATAATTAAAAAAAACAAAAAAAATATATTC
57979618 ATAAAAAATCACAATAAACATTAAACTAATCACAAACAATTTATAACCTAACCATAAATTACTAA
1 ATAAAAAATCACAATAAACATTAAACTAATCACAAACAATTTATAACCTAACCATAAATTACTAA
57979683 GAAAATGACTTTAAAATAATTTTAAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAA
66 GAAAATGACTTTAAAATAATTTTAAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAA
57979748 ACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTTTAAAAAAATTTAAAAAAA
131 ACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTTTAAAAAAATTTAAAAAAA
57979813 TTTACATTCATAAAAAATCACAAAAAACACTAAACTAAGCACAAACAATTTATAACCTAATGATA
196 TTTACATTCATAAAAAATCACAAAAAACACTAAACTAAGCACAAACAATTTATAACCTAATGATA
57979878 AATTACTAACAAAATAACTTTCAAATAATTAAAAAAAACAAAAAAAATATATTC
261 AATTACTAACAAAATAACTTTCAAATAATTAAAAAAAACAAAAAAAATATATTC
57979932 ATAAAAAATCACAATAAACATTAAACTAATCACAAACAATTTATAACCTAACCATAAATTACTAA
1 ATAAAAAATCACAATAAACATTAAACTAATCACAAACAATTTATAACCTAACCATAAATTACTAA
57979997 GAAAATGACTTTAAAATAATTTTAAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAA
66 GAAAATGACTTTAAAATAATTTTAAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAA
57980062 ACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTTTCAAATAATTAAAATAAA
131 ACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTTT---A-AA--AAAAT---
* * * * *
57980127 ATAAAAAATTTTACATTCATAAAAAAT-A-ACAAAACACTAAACTAAACACAAATAATTTATAA
187 TTAAAAAAATTTACATTCATAAAAAATCACAAAAAACACTAAACTAAGCACAAACAATTTATAA
57980189 TAATTGATAA
Statistics
Matches: 539, Mismatches: 21, Indels: 21
0.93 0.04 0.04
Matches are distributed among these distances:
313 69 0.13
314 306 0.57
315 21 0.04
316 1 0.00
317 2 0.00
318 2 0.00
320 32 0.06
321 80 0.15
322 1 0.00
323 25 0.05
ACGTcount: A:0.59, C:0.15, G:0.01, T:0.26
Consensus pattern (314 bp):
ATAAAAAATCACAATAAACATTAAACTAATCACAAACAATTTATAACCTAACCATAAATTACTAA
GAAAATGACTTTAAAATAATTTTAAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAA
ACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTTTAAAAAAATTTAAAAAAA
TTTACATTCATAAAAAATCACAAAAAACACTAAACTAAGCACAAACAATTTATAACCTAATGATA
AATTACTAACAAAATAACTTTCAAATAATTAAAAAAAACAAAAAAAATATATTC
Found at i:57981466 original size:57 final size:57
Alignment explanation
Indices: 57981309--57981477 Score: 194
Period size: 57 Copynumber: 2.9 Consensus size: 57
57981299 TAAAGTGGAC
* * * * ***
57981309 TTAAAATAAATCACCTCTTTAAAGAAAAGCTGATGATCACACCACCTTAAGGTGAAA
1 TTAAACTAAATCACCTCTTTAAGGCAAAGATGATGATCACACCTTTTTAAGGTGAAA
* * * * * *
57981366 TTAAACTTAATCACTTCTTTAGGGCGAAGATGATGATCACACCTTTTTAAGTTGAAC
1 TTAAACTAAATCACCTCTTTAAGGCAAAGATGATGATCACACCTTTTTAAGGTGAAA
* *
57981423 TTCAACTAAATCACCTCCTTAAGGCAAAGATGATGATCACACCTGTTTTAAGGTG
1 TTAAACTAAATCACCTCTTTAAGGCAAAGATGATGATCACACCT-TTTTAAGGTG
57981478 GATTTTATTG
Statistics
Matches: 91, Mismatches: 20, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
57 82 0.90
58 9 0.10
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.30
Consensus pattern (57 bp):
TTAAACTAAATCACCTCTTTAAGGCAAAGATGATGATCACACCTTTTTAAGGTGAAA
Found at i:57982186 original size:17 final size:17
Alignment explanation
Indices: 57982150--57982201 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
57982140 CTATTTCCCA
*
57982150 AAATAAATATTATTTATTT
1 AAATAAAT-TAATTT-TTT
57982169 AAATAAATTAATTTTTT
1 AAATAAATTAATTTTTT
* *
57982186 AATTAAATAAATTTTT
1 AAATAAATTAATTTTT
57982202 CAGTCCAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
17 17 0.57
18 5 0.17
19 8 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
AAATAAATTAATTTTTT
Found at i:57982191 original size:21 final size:20
Alignment explanation
Indices: 57982150--57982198 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
57982140 CTATTTCCCA
*
57982150 AAATAAA-TATTATTTATTT
1 AAATAAATTATTATTTAATT
*
57982169 AAATAAATTAATTTTTTAATT
1 AAATAAATT-ATTATTTAATT
57982190 AAATAAATT
1 AAATAAATT
57982199 TTTCAGTCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 7 0.27
20 1 0.04
21 18 0.69
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
AAATAAATTATTATTTAATT
Found at i:57993224 original size:12 final size:12
Alignment explanation
Indices: 57993207--57993232 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
57993197 GTTCTTTCAT
57993207 AATTTTTGTTAA
1 AATTTTTGTTAA
57993219 AATTTTTGTTAA
1 AATTTTTGTTAA
57993231 AA
1 AA
57993233 GAAGATAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (12 bp):
AATTTTTGTTAA
Found at i:57993423 original size:11 final size:11
Alignment explanation
Indices: 57993407--57993431 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
57993397 GGAATGTAAT
57993407 TTAAGCTTAAA
1 TTAAGCTTAAA
57993418 TTAAGCTTAAA
1 TTAAGCTTAAA
57993429 TTA
1 TTA
57993432 TTTGATAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (11 bp):
TTAAGCTTAAA
Found at i:57996956 original size:24 final size:24
Alignment explanation
Indices: 57996928--57996979 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
57996918 TTAGTAGGTC
* *
57996928 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
57996952 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
57996976 AAAT
1 AAAT
57996980 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:58000191 original size:21 final size:22
Alignment explanation
Indices: 58000165--58000217 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
58000155 TGTGGGGTCA
*
58000165 ACACGCCCATAT-AAAGGAGGC
1 ACACGCCCATATGAAAGAAGGC
* *
58000186 ACACGCCTAAATGAAAGAAGGC
1 ACACGCCCATATGAAAGAAGGC
*
58000208 ACACGACCAT
1 ACACGCCCAT
58000218 GTGACTATGA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.42, C:0.28, G:0.21, T:0.09
Consensus pattern (22 bp):
ACACGCCCATATGAAAGAAGGC
Found at i:58002894 original size:9 final size:9
Alignment explanation
Indices: 58002880--58002910 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
58002870 GTTAAACGGA
58002880 TCGAGTTAT
1 TCGAGTTAT
*
58002889 TCGAGTTAA
1 TCGAGTTAT
58002898 TCGAGTTAT
1 TCGAGTTAT
58002907 TCGA
1 TCGA
58002911 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:58002978 original size:9 final size:9
Alignment explanation
Indices: 58002961--58002997 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
58002951 TGAGTTTTCG
58002961 AATTCGAAT
1 AATTCGAAT
*
58002970 AACTCGAAT
1 AATTCGAAT
58002979 AATTCGAAT
1 AATTCGAAT
58002988 AATTCGAAT
1 AATTCGAAT
58002997 A
1 A
58002998 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:58003926 original size:5 final size:5
Alignment explanation
Indices: 58003916--58003956 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
58003906 GAACAAATAT
58003916 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG A
58003957 ATTTCATCTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.39
Consensus pattern (5 bp):
ATTCG
Found at i:58008285 original size:9 final size:9
Alignment explanation
Indices: 58008271--58008297 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
58008261 TTAAATGTTG
58008271 ATACTATTA
1 ATACTATTA
58008280 ATACTATTA
1 ATACTATTA
58008289 ATACTATTA
1 ATACTATTA
58008298 GTATTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (9 bp):
ATACTATTA
Found at i:58009325 original size:27 final size:27
Alignment explanation
Indices: 58009293--58009346 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
58009283 AACATTTATC
*
58009293 CCTCTAAGTTCCTTTCAAGACTGTCTT
1 CCTCTAAGTTCCTTTCAAGACTCTCTT
58009320 CCTCTAAGTTCCTTTCAAGACTCTCTT
1 CCTCTAAGTTCCTTTCAAGACTCTCTT
58009347 TCACTAACCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.19, C:0.31, G:0.09, T:0.41
Consensus pattern (27 bp):
CCTCTAAGTTCCTTTCAAGACTCTCTT
Found at i:58009353 original size:27 final size:27
Alignment explanation
Indices: 58009296--58009353 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
58009286 ATTTATCCCT
* *
58009296 CTAAGTTCCTTTCAAGACTGTCTTCCT
1 CTAAGTTCCTTTCAAGACTCTCTTCCA
*
58009323 CTAAGTTCCTTTCAAGACTCTCTTTCA
1 CTAAGTTCCTTTCAAGACTCTCTTCCA
58009350 CTAA
1 CTAA
58009354 CCTTTCAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.29, G:0.09, T:0.40
Consensus pattern (27 bp):
CTAAGTTCCTTTCAAGACTCTCTTCCA
Found at i:58009458 original size:30 final size:30
Alignment explanation
Indices: 58009413--58009494 Score: 119
Period size: 30 Copynumber: 2.7 Consensus size: 30
58009403 CATATTTATG
* * *
58009413 GAAAATCAAATATATGAGTATCAAATAATA
1 GAAAGTCAAAGATATGGGTATCAAATAATA
* *
58009443 GAAAGTCAAAGATATGGGTATCAAATATTG
1 GAAAGTCAAAGATATGGGTATCAAATAATA
58009473 GAAAGTCAAAGATATGGGTATC
1 GAAAGTCAAAGATATGGGTATC
58009495 GAGATATTGG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.48, C:0.07, G:0.20, T:0.26
Consensus pattern (30 bp):
GAAAGTCAAAGATATGGGTATCAAATAATA
Found at i:58012886 original size:15 final size:15
Alignment explanation
Indices: 58012868--58012914 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
58012858 GATATGATGG
58012868 TCAAAGATATGGGTA
1 TCAAAGATATGGGTA
* **
58012883 TCAAATAT-TGGAAA
1 TCAAAGATATGGGTA
58012897 GTCAAAGATATGGGTA
1 -TCAAAGATATGGGTA
58012913 TC
1 TC
58012915 GAGATATTGG
Statistics
Matches: 24, Mismatches: 6, Indels: 4
0.71 0.18 0.12
Matches are distributed among these distances:
14 4 0.17
15 16 0.67
16 4 0.17
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (15 bp):
TCAAAGATATGGGTA
Found at i:58012901 original size:30 final size:31
Alignment explanation
Indices: 58012867--58012924 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 31
58012857 AGATATGATG
58012867 GTCAAAGATATGGGTATC-AAATATTGGAAA
1 GTCAAAGATATGGGTATCGAAATATTGGAAA
*
58012897 GTCAAAGATATGGGTATCGAGATATTGG
1 GTCAAAGATATGGGTATCGAAATATTGG
58012925 CATAATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.38, C:0.07, G:0.28, T:0.28
Consensus pattern (31 bp):
GTCAAAGATATGGGTATCGAAATATTGGAAA
Found at i:58027740 original size:18 final size:17
Alignment explanation
Indices: 58027701--58027784 Score: 80
Period size: 18 Copynumber: 4.6 Consensus size: 17
58027691 AATGAGCATA
*
58027701 TTAATTTTTAAAGTTTTAT
1 TTAATTTTT-AA-TTTTTT
58027720 TTAATTTTTAATTTATTT
1 TTAATTTTTAATTT-TTT
*
58027738 TTATTTTTTGAATTTTTT
1 TTAATTTTT-AATTTTTT
*
58027756 TTAAATTTT-ATGTTTTT
1 TTAATTTTTAAT-TTTTT
58027773 TTAATTTATTAA
1 TTAATTT-TTAA
58027785 AACTTTTTCC
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
16 2 0.04
17 14 0.25
18 24 0.44
19 15 0.27
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (17 bp):
TTAATTTTTAATTTTTT
Found at i:58027792 original size:46 final size:48
Alignment explanation
Indices: 58027705--58027803 Score: 114
Period size: 47 Copynumber: 2.1 Consensus size: 48
58027695 AGCATATTAA
*** **
58027705 TTTTTAAAGTTTTATTTAATTTTTAATTTATTTTTA-TTTTTTGAATTT
1 TTTTTAAAGTTTTATTT-ATTTTTAATTTATTAAAACTTTTTCCAATTT
58027753 TTTTTAAA-TTTTATGTT-TTTTTAATTTATTAAAACTTTTTCCAATTT
1 TTTTTAAAGTTTTAT-TTATTTTTAATTTATTAAAACTTTTTCCAATTT
58027800 TTTT
1 TTTT
58027804 AAAAAGTTAT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
46 14 0.32
47 20 0.45
48 10 0.23
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (48 bp):
TTTTTAAAGTTTTATTTATTTTTAATTTATTAAAACTTTTTCCAATTT
Found at i:58031166 original size:29 final size:30
Alignment explanation
Indices: 58031096--58031166 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 30
58031086 ATAATTGAAT
* *
58031096 CTAAATTTTCAAATTTAAAAAGTAAAGAAA
1 CTAAATTTTTAAATATAAAAAGTAAAGAAA
* **
58031126 CTAAATTCTTAAATAT-AAAAGTAGGGAAA
1 CTAAATTTTTAAATATAAAAAGTAAAGAAA
58031155 CTAAATTTTTAA
1 CTAAATTTTTAA
58031167 TGTACGAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
29 22 0.63
30 13 0.37
ACGTcount: A:0.52, C:0.07, G:0.08, T:0.32
Consensus pattern (30 bp):
CTAAATTTTTAAATATAAAAAGTAAAGAAA
Found at i:58038483 original size:26 final size:26
Alignment explanation
Indices: 58038404--58038483 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
58038394 TTTTGGAGTT
58038404 AAATTGATTCCATGAAGTGAAACTAC
1 AAATTGATTCCATGAAGTGAAACTAC
*
58038430 AAATTG--TCCAT----TGACACAGCGT-T
1 AAATTGATTCCATGAAGTGA-A-A-C-TAC
58038453 AAATTGATTCCATGAAGTGAAACTAC
1 AAATTGATTCCATGAAGTGAAACTAC
58038479 AAATT
1 AAATT
58038484 CTTTTCACCC
Statistics
Matches: 41, Mismatches: 2, Indels: 22
0.63 0.03 0.34
Matches are distributed among these distances:
20 3 0.07
21 1 0.02
22 1 0.02
23 7 0.17
24 6 0.15
25 6 0.15
26 12 0.29
27 1 0.02
28 1 0.02
29 3 0.07
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (26 bp):
AAATTGATTCCATGAAGTGAAACTAC
Found at i:58039501 original size:142 final size:142
Alignment explanation
Indices: 58039245--58039510 Score: 383
Period size: 142 Copynumber: 1.9 Consensus size: 142
58039235 ATATAGACAA
** * * *
58039245 GAGGAAAACTTGGGCATCTAAAGCAAAACTGATTTAAAAGGGAACAACAGTCTTTCACTCTCATC
1 GAGGAAAACCAGGGCATCTAAAACAAAACTCATTTAAAAGGGAACAACAGTCTATCACTCTCATC
** *
58039310 ACCTACCATCTCCTTCGAGACTCGATTACGTTAGGAAACAGAAGATATATGAATGAAAATTTATA
66 ACCTACCATCTCCCCCGAGACTCAATTACGTTAGGAAACAGAAGATATATGAATGAAAATTTATA
58039375 CAAAACAAATAT
131 CAAAACAAATAT
* *
58039387 GAGGAAAACCAGGGCATCTAAAACAAAAC-CATTTTAAAAGGGACCAACAGTCTATCATTCTCAT
1 GAGGAAAACCAGGGCATCTAAAACAAAACTCA-TTTAAAAGGGAACAACAGTCTATCACTCTCAT
* * *
58039451 CACCTACCATCTCCCCCGAGACTCAATTA-TTATATGAAACAGAAGTTATATGAATGAAAA
65 CACCTACCATCTCCCCCGAGACTCAATTACGT-TAGGAAACAGAAGATATATGAATGAAAA
58039511 CTGATAATAA
Statistics
Matches: 109, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
141 2 0.02
142 107 0.98
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.24
Consensus pattern (142 bp):
GAGGAAAACCAGGGCATCTAAAACAAAACTCATTTAAAAGGGAACAACAGTCTATCACTCTCATC
ACCTACCATCTCCCCCGAGACTCAATTACGTTAGGAAACAGAAGATATATGAATGAAAATTTATA
CAAAACAAATAT
Found at i:58045042 original size:27 final size:27
Alignment explanation
Indices: 58044968--58045046 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 27
58044958 AAACCGTACA
58044968 AATTAA-TAA-TTTTTAAATAAAAAATT
1 AATTAATTAATTTTTTAAAT-AAAAATT
* ** ** *
58044994 AACTCTTTAATTTAATATATAAAAATT
1 AATTAATTAATTTTTTAAATAAAAATT
58045021 AATTAATTAATTTTTTAAATAAAAAT
1 AATTAATTAATTTTTTAAATAAAAAT
58045047 AAAATATAAT
Statistics
Matches: 39, Mismatches: 12, Indels: 3
0.72 0.22 0.06
Matches are distributed among these distances:
26 3 0.08
27 30 0.77
28 6 0.15
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (27 bp):
AATTAATTAATTTTTTAAATAAAAATT
Found at i:58050073 original size:90 final size:89
Alignment explanation
Indices: 58049952--58050278 Score: 413
Period size: 90 Copynumber: 3.6 Consensus size: 89
58049942 TTTGTATCTG
* * *
58049952 TAAATTTAATTTAGTCAGTATTCTATGTAGTTTGAATTTAAAATTTTCGTGTATTAATTTTAACC
1 TAAATTTAATTTAATC-GTATTATATATAGTTTGAATTTAAAATTTTCGTGTATTAATTTTAACC
58050017 ATCTGTTTGTAGTTTGTTGGGTGTT
65 ATCTGTTTGTAGTTTGTTGGGTGTT
* * * * *
58050042 TAAATTTAATTTAATCTGTGTTATATATAGTTTGAATTTAAAATTTTCATGCACTAATTTTATCC
1 TAAATTTAATTTAATC-GTATTATATATAGTTTGAATTTAAAATTTTCGTGTATTAATTTTAACC
*
58050107 ATCTGTTTGTAGTTTGTTGAGTGTT
65 ATCTGTTTGTAGTTTGTTGGGTGTT
* * * * ** *
58050132 TAAATTTAATTTAGACCGTATTATATGTAGTTTAAATTTAAAATTTTTGTGTATTAAACTTACCC
1 TAAATTTAATTTA-ATCGTATTATATATAGTTTGAATTTAAAATTTTCGTGTATTAATTTTAACC
58050197 ATCTGTTTGTAGTTTGTTGGGTGTT
65 ATCTGTTTGTAGTTTGTTGGGTGTT
* * * * * *
58050222 TAAATTTAATTTAGTGCATATTAT-TATTGTTTGAATTTTATATTTTTGTGTATTAAT
1 TAAATTTAATTTAAT-CGTATTATATATAGTTTGAATTTAAAATTTTCGTGTATTAAT
58050279 ATTGTAGAAT
Statistics
Matches: 204, Mismatches: 31, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
89 27 0.13
90 175 0.86
91 2 0.01
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.52
Consensus pattern (89 bp):
TAAATTTAATTTAATCGTATTATATATAGTTTGAATTTAAAATTTTCGTGTATTAATTTTAACCA
TCTGTTTGTAGTTTGTTGGGTGTT
Found at i:58052145 original size:22 final size:24
Alignment explanation
Indices: 58052080--58052139 Score: 63
Period size: 23 Copynumber: 2.6 Consensus size: 24
58052070 GCCCTATCTT
* * * *
58052080 TTTAACTTTTTTTTACCATTT-CA
1 TTTAAATTATTTTTCCCATTTAAA
58052103 TTTAAATTATTTTTCCCATTTAAA
1 TTTAAATTATTTTTCCCATTTAAA
58052127 TTT-AATT-TTTTTC
1 TTTAAATTATTTTTC
58052140 TTATTTCAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 6 0.19
23 22 0.69
24 4 0.12
ACGTcount: A:0.25, C:0.13, G:0.00, T:0.62
Consensus pattern (24 bp):
TTTAAATTATTTTTCCCATTTAAA
Found at i:58052152 original size:17 final size:17
Alignment explanation
Indices: 58052126--58052184 Score: 56
Period size: 16 Copynumber: 3.6 Consensus size: 17
58052116 TCCCATTTAA
58052126 ATTT-AATTTTTTTCTT
1 ATTTCAATTTTTTTCTT
58052142 ATTTCAA-TTTTTT-TT
1 ATTTCAATTTTTTTCTT
58052157 ATTTCAGTATTTGTTTTC--
1 ATTTCA--ATTT-TTTTCTT
58052175 ATTTCAATTT
1 ATTTCAATTT
58052185 ATAATTTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
15 8 0.22
16 14 0.38
17 3 0.08
18 8 0.22
19 4 0.11
ACGTcount: A:0.20, C:0.08, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTCAATTTTTTTCTT
Found at i:58052173 original size:18 final size:15
Alignment explanation
Indices: 58052133--58052184 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 15
58052123 TAAATTTAAT
58052133 TTTTTTCTTATTTCAA
1 TTTTTT-TTATTTCAA
58052149 TTTTTTTTATTTCAGTA
1 TTTTTTTTATTTCA--A
*
58052166 TTTGTTTTCATTTCAA
1 TTT-TTTTTATTTCAA
58052182 TTT
1 TTT
58052185 ATAATTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
15 8 0.25
16 10 0.31
17 4 0.12
18 10 0.31
ACGTcount: A:0.17, C:0.10, G:0.04, T:0.69
Consensus pattern (15 bp):
TTTTTTTTATTTCAA
Found at i:58052235 original size:5 final size:5
Alignment explanation
Indices: 58052206--58052325 Score: 73
Period size: 5 Copynumber: 22.4 Consensus size: 5
58052196 TCATTTAAAC
* * *
58052206 TTTCA TTCCA TTTCA TAATCA --TCA TTTCA TTTTA TATTCA TTTAACA
1 TTTCA TTTCA TTTCA T-TTCA TTTCA TTTCA TTTCA T-TTCA TTT--CA
* * *
58052253 TTTCA TTTCA TTTCA TTTCA TATTCA TTACAAA TTACA TTTCA TTTCG
1 TTTCA TTTCA TTTCA TTTCA T-TTCA TTTC--A TTTCA TTTCA TTTCA
*
58052301 TATTCA TTTAAAA TTTCA TTTCA TT
1 T-TTCA TTT--CA TTTCA TTTCA TT
58052326 AATTGTTTTC
Statistics
Matches: 92, Mismatches: 11, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
3 3 0.03
5 59 0.64
6 16 0.17
7 14 0.15
ACGTcount: A:0.29, C:0.17, G:0.01, T:0.53
Consensus pattern (5 bp):
TTTCA
Found at i:58052247 original size:11 final size:11
Alignment explanation
Indices: 58052214--58052296 Score: 68
Period size: 11 Copynumber: 7.7 Consensus size: 11
58052204 ACTTTCATTC
*
58052214 CATTTCATAAT
1 CATTTCATATT
58052225 CA--TCAT-TT
1 CATTTCATATT
*
58052233 CATTTTATATT
1 CATTTCATATT
58052244 CATTTAACAT-TT
1 CATTT--CATATT
58052256 CATTTCAT-TT
1 CATTTCATATT
58052266 CATTTCATATT
1 CATTTCATATT
* *
58052277 CATTACAAATT
1 CATTTCATATT
58052288 ACATTTCAT
1 -CATTTCAT
58052297 TTCGTATTCA
Statistics
Matches: 58, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
8 3 0.05
9 4 0.07
10 16 0.28
11 20 0.34
12 13 0.22
13 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.00, T:0.51
Consensus pattern (11 bp):
CATTTCATATT
Found at i:58052257 original size:23 final size:22
Alignment explanation
Indices: 58052194--58052325 Score: 82
Period size: 23 Copynumber: 6.1 Consensus size: 22
58052184 TATAATTTAT
*
58052194 TTTCATTTAA-ACTTTCATTCCA
1 TTTCATTTAACA-TTTCATTTCA
* * *
58052216 TTTCATAATCATCATTTCATTTTA
1 TTTCAT--TTAACATTTCATTTCA
58052240 TATTCATTTAACATTTCATTTCA
1 T-TTCATTTAACATTTCATTTCA
58052263 TTTCATTT--CA--T-A-TTCA
1 TTTCATTTAACATTTCATTTCA
* * *
58052279 TTACAAATT-ACATTTCATTTCG
1 TTTC-ATTTAACATTTCATTTCA
*
58052301 TATTCATTTAAAATTTCATTTCA
1 T-TTCATTTAACATTTCATTTCA
58052324 TT
1 TT
58052326 AATTGTTTTC
Statistics
Matches: 84, Mismatches: 14, Indels: 24
0.69 0.11 0.20
Matches are distributed among these distances:
16 7 0.08
17 4 0.05
18 3 0.04
20 3 0.04
21 1 0.01
22 21 0.25
23 28 0.33
24 11 0.13
25 6 0.07
ACGTcount: A:0.30, C:0.17, G:0.01, T:0.52
Consensus pattern (22 bp):
TTTCATTTAACATTTCATTTCA
Found at i:58052260 original size:28 final size:28
Alignment explanation
Indices: 58052227--58052325 Score: 101
Period size: 28 Copynumber: 3.4 Consensus size: 28
58052217 TTCATAATCA
58052227 TCATTTCATTTTATATTCATTTAACATTTCATT
1 TCATTTCATTTTATATTCATTTAA-A----ATT
*
58052260 TCATTTCATTTCATATTCA-TTACAAATT
1 TCATTTCATTTTATATTCATTTA-AAATT
* **
58052288 ACATTTCATTTCGTATTCATTTAAAATT
1 TCATTTCATTTTATATTCATTTAAAATT
58052316 TCATTTCATT
1 TCATTTCATT
58052326 AATTGTTTTC
Statistics
Matches: 60, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
28 34 0.57
29 3 0.05
32 4 0.07
33 19 0.32
ACGTcount: A:0.29, C:0.16, G:0.01, T:0.54
Consensus pattern (28 bp):
TCATTTCATTTTATATTCATTTAAAATT
Found at i:58052267 original size:33 final size:33
Alignment explanation
Indices: 58052227--58052325 Score: 118
Period size: 33 Copynumber: 3.2 Consensus size: 33
58052217 TTCATAATCA
*
58052227 TCATTTCATTTTATATTCATTTAACATTTCATT
1 TCATTTCATTTCATATTCATTTAACATTTCATT
*
58052260 TCATTTCATTTCATATTCA-TT-ACA---AATT
1 TCATTTCATTTCATATTCATTTAACATTTCATT
* * *
58052288 ACATTTCATTTCGTATTCATTTAAAATTTCATT
1 TCATTTCATTTCATATTCATTTAACATTTCATT
58052321 TCATT
1 TCATT
58052326 AATTGTTTTC
Statistics
Matches: 54, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
28 20 0.37
29 2 0.04
30 2 0.04
31 3 0.06
32 2 0.04
33 25 0.46
ACGTcount: A:0.29, C:0.16, G:0.01, T:0.54
Consensus pattern (33 bp):
TCATTTCATTTCATATTCATTTAACATTTCATT
Found at i:58052416 original size:15 final size:16
Alignment explanation
Indices: 58052396--58052436 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
58052386 AGTAGTCTCA
*
58052396 TTTCAATT-TATCTTT
1 TTTCAATTCAATCTTT
*
58052411 TTTCAATTCAATTTTT
1 TTTCAATTCAATCTTT
58052427 TTTCAATTCA
1 TTTCAATTCA
58052437 TTCCATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTCAATTCAATCTTT
Found at i:58052745 original size:26 final size:26
Alignment explanation
Indices: 58052715--58052843 Score: 102
Period size: 26 Copynumber: 5.3 Consensus size: 26
58052705 TTCATTTCTA
58052715 TTTCCATTTCATTTAAATTATCTTTT
1 TTTCCATTTCATTTAAATTATCTTTT
*
58052741 TTT-C----CATTTAAATT-TATTTT
1 TTTCCATTTCATTTAAATTATCTTTT
*
58052761 TTTCTCATTTCATTTAAATCATCTTTT
1 TTTC-CATTTCATTTAAATTATCTTTT
**
58052788 TTT-C----CATTTAAATT-TAATTT
1 TTTCCATTTCATTTAAATTATCTTTT
*
58052808 TTTCTCATTTCATTTAAATTATCTTTC
1 TTTC-CATTTCATTTAAATTATCTTTT
*
58052835 TTTCTATTT
1 TTTCCATTT
58052844 TAATTTACGT
Statistics
Matches: 79, Mismatches: 10, Indels: 28
0.68 0.09 0.24
Matches are distributed among these distances:
20 15 0.19
21 19 0.24
22 2 0.03
25 2 0.03
26 26 0.33
27 15 0.19
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (26 bp):
TTTCCATTTCATTTAAATTATCTTTT
Found at i:58052748 original size:21 final size:21
Alignment explanation
Indices: 58052724--58052848 Score: 90
Period size: 21 Copynumber: 5.5 Consensus size: 21
58052714 ATTTCCATTT
58052724 CATTTAAATTATCTTTTTTTC
1 CATTTAAATTATCTTTTTTTC
58052745 CATTTAAATTTAT-TTTTTTCTC
1 CATTTAAA-TTATCTTTTTT-TC
*
58052767 ATTTCATTTAAATCATCTTTTTTTC
1 ----CATTTAAATTATCTTTTTTTC
* *
58052792 CATTTAAATTTAATTTTTTCTCATTT
1 CATTTAAA-TT-ATCTTTT-T--TTC
*
58052818 CATTTAAATTATCTTTCTTTC
1 CATTTAAATTATCTTTTTTTC
* *
58052839 TATTTTAATT
1 CATTTAAATT
58052849 TACGTTTTTT
Statistics
Matches: 83, Mismatches: 9, Indels: 24
0.72 0.08 0.21
Matches are distributed among these distances:
21 32 0.39
22 7 0.08
23 7 0.08
24 6 0.07
25 7 0.08
26 24 0.29
ACGTcount: A:0.25, C:0.14, G:0.00, T:0.62
Consensus pattern (21 bp):
CATTTAAATTATCTTTTTTTC
Found at i:58052771 original size:47 final size:47
Alignment explanation
Indices: 58052715--58052864 Score: 221
Period size: 47 Copynumber: 3.2 Consensus size: 47
58052705 TTCATTTCTA
58052715 TTTC-CATTTCATTTAAATTATCTTTTTTTCCATTTAAATTTATTTT
1 TTTCTCATTTCATTTAAATTATCTTTTTTTCCATTTAAATTTATTTT
* *
58052761 TTTCTCATTTCATTTAAATCATCTTTTTTTCCATTTAAATTTAATTT
1 TTTCTCATTTCATTTAAATTATCTTTTTTTCCATTTAAATTTATTTT
* * *
58052808 TTTCTCATTTCATTTAAATTATCTTTCTTTCTATTTTAATTTACGTTTT
1 TTTCTCATTTCATTTAAATTATCTTTTTTTCCATTTAAATTTA--TTTT
*
58052857 TTTTTCAT
1 TTTCTCAT
58052865 ATTAATTTTT
Statistics
Matches: 93, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
46 4 0.04
47 79 0.85
49 10 0.11
ACGTcount: A:0.23, C:0.14, G:0.01, T:0.63
Consensus pattern (47 bp):
TTTCTCATTTCATTTAAATTATCTTTTTTTCCATTTAAATTTATTTT
Found at i:58052947 original size:44 final size:44
Alignment explanation
Indices: 58052895--58053086 Score: 314
Period size: 44 Copynumber: 4.4 Consensus size: 44
58052885 AATTTATTTC
58052895 ATTTAATGTGTTTTAAAATAAATATGTATGTATATTGTATTATA
1 ATTTAATGTGTTTTAAAATAAATATGTATGTATATTGTATTATA
* *
58052939 ATTTAATGTGTTTTAAAATAAAGATGTATTTATATTGTATTATA
1 ATTTAATGTGTTTTAAAATAAATATGTATGTATATTGTATTATA
*
58052983 ATTTAATGTGTTTTAAAATAAATATGTATGTATATTGTATTACA
1 ATTTAATGTGTTTTAAAATAAATATGTATGTATATTGTATTATA
* * *
58053027 ATTTAATGTGCTTTAAATTAAATATGCATGTATATTGTATTATA
1 ATTTAATGTGTTTTAAAATAAATATGTATGTATATTGTATTATA
*
58053071 ATTTAACGT-TTTTAAA
1 ATTTAATGTGTTTTAAA
58053087 TTAGGAATAA
Statistics
Matches: 137, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
43 6 0.04
44 131 0.96
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.49
Consensus pattern (44 bp):
ATTTAATGTGTTTTAAAATAAATATGTATGTATATTGTATTATA
Found at i:58053110 original size:88 final size:88
Alignment explanation
Indices: 58052895--58053112 Score: 233
Period size: 88 Copynumber: 2.5 Consensus size: 88
58052885 AATTTATTTC
* * * *** * *
58052895 ATTTAATGTGTTTTAAAATAAATATGTATGTATATTGTATTATAATTTAATGTGTTTTAAAATAA
1 ATTTAACGTGTTTTAAAATAAATAAGAAAAAATATTGTATTACAATTTAATGTGCTTTAAAATAA
* *
58052960 AGATGTATTTATATTGTATTATA
66 AGATGCATGTATATTGTATTATA
* * * *** *
58052983 ATTTAATGTGTTTTAAAATAAATATGTATGTATATTGTATTACAATTTAATGTGCTTTAAATTAA
1 ATTTAACGTGTTTTAAAATAAATAAGAAAAAATATTGTATTACAATTTAATGTGCTTTAAAATAA
*
58053048 ATATGCATGTATATTGTATTATA
66 AGATGCATGTATATTGTATTATA
*
58053071 ATTTAACGT-TTTTAAATTAGGAATAAGAAAAAATA-TGTATTA
1 ATTTAACGTGTTTTAAAATA--AATAAGAAAAAATATTGTATTA
58053113 ATAATTATAT
Statistics
Matches: 115, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
87 9 0.08
88 97 0.84
89 9 0.08
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (88 bp):
ATTTAACGTGTTTTAAAATAAATAAGAAAAAATATTGTATTACAATTTAATGTGCTTTAAAATAA
AGATGCATGTATATTGTATTATA
Found at i:58056145 original size:160 final size:162
Alignment explanation
Indices: 58055878--58056177 Score: 541
Period size: 160 Copynumber: 1.9 Consensus size: 162
58055868 CATTCCTATT
58055878 TTTTTTTACTTTGAAATACACAACCTTCTTCAGTTGTATTTATCATTTCTCTATCGAAATGAACA
1 TTTTTTTACTTTGAAATACACAACCTTCTTCAGTTGTATTTATCATTTCTCTATCGAAATGAACA
***
58055943 TAAACAAACAAAATTTGGGAACTCATCTTAAAATTTTTTTGCTTCCTTCTTAACAAAGAAAAAAC
66 TAAACAAACAAAATTTGGGAACTCATCTTAAAAAAATTTTGCTTCCTTCTTAACAAAGAAAAAAC
58056008 TAATATTTTTGCTTCTTTCTTAACAAAGAAAA
131 TAATATTTTTGCTTCTTTCTTAACAAAGAAAA
* *
58056040 TTTTTTT-CTTTGAAATACACGACCTTTTTCAGTTGTATTTATCATTT-TCTATCGAAATGAACA
1 TTTTTTTACTTTGAAATACACAACCTTCTTCAGTTGTATTTATCATTTCTCTATCGAAATGAACA
58056103 TAAACAAACAAAATTTGGGAACTCATCTTAAAAAAATTTTGCTTCCTTCTTAACAAAGAAAAAAC
66 TAAACAAACAAAATTTGGGAACTCATCTTAAAAAAATTTTGCTTCCTTCTTAACAAAGAAAAAAC
58056168 TAATATTTTT
131 TAATATTTTT
58056178 AATCTCGATT
Statistics
Matches: 133, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
160 88 0.66
161 38 0.29
162 7 0.05
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.40
Consensus pattern (162 bp):
TTTTTTTACTTTGAAATACACAACCTTCTTCAGTTGTATTTATCATTTCTCTATCGAAATGAACA
TAAACAAACAAAATTTGGGAACTCATCTTAAAAAAATTTTGCTTCCTTCTTAACAAAGAAAAAAC
TAATATTTTTGCTTCTTTCTTAACAAAGAAAA
Found at i:58056566 original size:61 final size:61
Alignment explanation
Indices: 58056471--58056591 Score: 215
Period size: 61 Copynumber: 2.0 Consensus size: 61
58056461 TTGGAGCCAG
* *
58056471 CCATCAGTGTCCCAAAGTAAAAAAAATGGCCTTGGGACCCGAAAAATGTACTTGGTGTTGA
1 CCATCAGTGTCCCAAAGTAAAAAAAATGACCTTGGGACCCGAAAAATGTACCTGGTGTTGA
*
58056532 CCATCAGTGTCCCAAAGTAAAAAAAATTACCTTGGGACCCGAAAAATGTACCTGGTGTTG
1 CCATCAGTGTCCCAAAGTAAAAAAAATGACCTTGGGACCCGAAAAATGTACCTGGTGTTG
58056592 GCATCTACTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (61 bp):
CCATCAGTGTCCCAAAGTAAAAAAAATGACCTTGGGACCCGAAAAATGTACCTGGTGTTGA
Found at i:58064113 original size:25 final size:25
Alignment explanation
Indices: 58064061--58064118 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
58064051 AAAAGAAATA
* **
58064061 AATACATATATTTATTGTTATATTG
1 AATAAATATATTTATTGTTATAGGG
*
58064086 AATTAATATATTTATT-TATATAGGG
1 AATAAATATATTTATTGT-TATAGGG
58064111 AATAAATA
1 AATAAATA
58064119 AATGTAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.43, C:0.02, G:0.09, T:0.47
Consensus pattern (25 bp):
AATAAATATATTTATTGTTATAGGG
Found at i:58064382 original size:29 final size:31
Alignment explanation
Indices: 58064340--58064401 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 31
58064330 TAGTAAAAGT
58064340 AAAATTATACTTTAACCCCTTAAAAA-TATA
1 AAAATTATACTTTAACCCCTTAAAAATTATA
* * **
58064370 AAAATTTTA-TTTAATCTTTTAAAAATTATA
1 AAAATTATACTTTAACCCCTTAAAAATTATA
58064400 AA
1 AA
58064402 GATATAGTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 13 0.48
30 14 0.52
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (31 bp):
AAAATTATACTTTAACCCCTTAAAAATTATA
Found at i:58065948 original size:22 final size:23
Alignment explanation
Indices: 58065905--58065950 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
58065895 AGAAAACTGA
* *
58065905 TGCTACTTTATTTTTTACTGTTT
1 TGCTACTGTATTTTTCACTGTTT
*
58065928 TGCTACTGT-TTTTTCATTGTTT
1 TGCTACTGTATTTTTCACTGTTT
58065950 T
1 T
58065951 ACTATCATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.11, C:0.13, G:0.11, T:0.65
Consensus pattern (23 bp):
TGCTACTGTATTTTTCACTGTTT
Found at i:58067651 original size:11 final size:11
Alignment explanation
Indices: 58067635--58067671 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
58067625 TAAACCAAAT
58067635 TAAAATATATA
1 TAAAATATATA
58067646 TAAAATATATA
1 TAAAATATATA
58067657 -ATAAATATA-A
1 TA-AAATATATA
58067667 TAAAA
1 TAAAA
58067672 GTCCAATACA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 5 0.21
11 19 0.79
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAATATATA
Found at i:58067721 original size:15 final size:15
Alignment explanation
Indices: 58067703--58067740 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
58067693 CAAGTTACAG
58067703 AAACCCAACTAGCCT
1 AAACCCAACTAGCCT
*
58067718 AAACCCAATTAGCCT
1 AAACCCAACTAGCCT
*
58067733 AAGCCCAA
1 AAACCCAA
58067741 TACCCTAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.42, C:0.37, G:0.08, T:0.13
Consensus pattern (15 bp):
AAACCCAACTAGCCT
Found at i:58067741 original size:15 final size:15
Alignment explanation
Indices: 58067706--58067754 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
58067696 GTTACAGAAA
* *
58067706 CCCAACTAGCCTAAA
1 CCCAATTAGCCTAAG
58067721 CCCAATTAGCCTAAG
1 CCCAATTAGCCTAAG
*
58067736 CCCAA-TACCCT-AG
1 CCCAATTAGCCTAAG
58067749 CCCAAT
1 CCCAAT
58067755 CACGAAGCGG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
13 7 0.23
14 5 0.17
15 18 0.60
ACGTcount: A:0.35, C:0.41, G:0.08, T:0.16
Consensus pattern (15 bp):
CCCAATTAGCCTAAG
Done.