Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 202 of 205
Found at i:59903033 original size:19 final size:20
Alignment explanation
Indices: 59903004--59903055 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
59902994 CACTTCGTGA
* *
59903004 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
59903023 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
59903043 AAATG-AATGCAAA
1 AAATGTAATGCAAA
59903056 AAGATACTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 21 0.75
20 7 0.25
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:59905317 original size:22 final size:22
Alignment explanation
Indices: 59905289--59905331 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
59905279 ATAAATGAAA
*
59905289 ATATATAATGAGAATAATAATG
1 ATATATAATAAGAATAATAATG
*
59905311 ATATATAATAATAATAATAAT
1 ATATATAATAAGAATAATAAT
59905332 ATAAAATTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (22 bp):
ATATATAATAAGAATAATAATG
Found at i:59906146 original size:16 final size:17
Alignment explanation
Indices: 59906127--59906160 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
59906117 ATTAATGTTT
59906127 TGGGCTA-TTTGGGCTG
1 TGGGCTAGTTTGGGCTG
*
59906143 TGGGTTAGTTTGGGCTG
1 TGGGCTAGTTTGGGCTG
59906160 T
1 T
59906161 TAATTTGGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.06, C:0.09, G:0.44, T:0.41
Consensus pattern (17 bp):
TGGGCTAGTTTGGGCTG
Found at i:59906226 original size:20 final size:20
Alignment explanation
Indices: 59906201--59906248 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 20
59906191 TAATGGGCCA
*
59906201 TTTGGGTCTGGGT-TTAGTTT
1 TTTGGGTCTGGGTGTTAG-GT
59906221 TTTGGGT-T-GGTGTTAGGT
1 TTTGGGTCTGGGTGTTAGGT
59906239 TTTGGGTCTG
1 TTTGGGTCTG
59906249 CTGGAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 11 0.46
19 6 0.25
20 7 0.29
ACGTcount: A:0.04, C:0.04, G:0.40, T:0.52
Consensus pattern (20 bp):
TTTGGGTCTGGGTGTTAGGT
Found at i:59906505 original size:24 final size:24
Alignment explanation
Indices: 59906478--59906529 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
59906468 TTAGTAAGTC
*
59906478 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* * *
59906502 AAATATATTTTACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
59906526 AAAT
1 AAAT
59906530 CTTCTAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.02, T:0.35
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:59913249 original size:11 final size:11
Alignment explanation
Indices: 59913233--59913257 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
59913223 ATAAAAATAG
59913233 AAACAATAAAT
1 AAACAATAAAT
59913244 AAACAATAAAT
1 AAACAATAAAT
59913255 AAA
1 AAA
59913258 AAAATAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAACAATAAAT
Found at i:59918534 original size:4 final size:5
Alignment explanation
Indices: 59918500--59918535 Score: 56
Period size: 5 Copynumber: 7.2 Consensus size: 5
59918490 TGTAAAAAAC
59918500 AATAA TAATAA AATAA AATAA AATAA AAT-A AATAA A
1 AATAA -AATAA AATAA AATAA AATAA AATAA AATAA A
59918536 CAAATGAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 4 0.14
5 20 0.69
6 5 0.17
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
AATAA
Found at i:59919638 original size:11 final size:11
Alignment explanation
Indices: 59919622--59919646 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
59919612 ATAAAAATAG
59919622 AAACAATAAAT
1 AAACAATAAAT
59919633 AAACAATAAAT
1 AAACAATAAAT
59919644 AAA
1 AAA
59919647 AAAATAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAACAATAAAT
Found at i:59924843 original size:13 final size:13
Alignment explanation
Indices: 59924825--59924850 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
59924815 GTTTACAAAA
59924825 TTCAAATCACTTT
1 TTCAAATCACTTT
59924838 TTCAAATCACTTT
1 TTCAAATCACTTT
59924851 CTTATTTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (13 bp):
TTCAAATCACTTT
Found at i:59928319 original size:15 final size:15
Alignment explanation
Indices: 59928299--59928340 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
59928289 TTGTATGTAC
*
59928299 AAATACTACAATAAT
1 AAATACAACAATAAT
59928314 AAATACAACAATAAT
1 AAATACAACAATAAT
*
59928329 AAATACATCAAT
1 AAATACAACAAT
59928341 GACATAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.62, C:0.14, G:0.00, T:0.24
Consensus pattern (15 bp):
AAATACAACAATAAT
Found at i:59930351 original size:45 final size:45
Alignment explanation
Indices: 59930266--59930370 Score: 124
Period size: 45 Copynumber: 2.3 Consensus size: 45
59930256 CACTGTAATG
* * * * * *
59930266 TCAGGGAGGTAGGATTTGATTTCTTGGGTCTGCCCTACTGCAATT
1 TCAGGGAGATAAGACTTGCTTTCTTGAGTCTGCCCTACTGCAACT
59930311 TCAAGGG-GATAAGACTTGCTTTCTTGAGTCTGCTCC-ACTGCAACT
1 TC-AGGGAGATAAGACTTGCTTTCTTGAGTCTGC-CCTACTGCAACT
59930356 TCAGGGAGATAAGAC
1 TCAGGGAGATAAGAC
59930371 CCGATATGAT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
44 4 0.08
45 41 0.80
46 6 0.12
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
TCAGGGAGATAAGACTTGCTTTCTTGAGTCTGCCCTACTGCAACT
Found at i:59930717 original size:217 final size:219
Alignment explanation
Indices: 59930304--59930718 Score: 577
Period size: 217 Copynumber: 1.9 Consensus size: 219
59930294 TCTGCCCTAC
* * *
59930304 TGCAATTTCAAGGGGATAAGACTTGCTTTCTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAG
1 TGCAACTTCAAGGGGATAAAACTTGCTTACTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAG
* * * * *
59930369 ACCCGATATGATCTATTCTACTGCACCTTCAGAAAGATAAGATCTGTGGTTTTAATCCACTCCAC
66 ACCAGATATGATATACTCTACTGCAACTTCAGAAAGATAAGATCTGTGATTTTAATCCACTCCAC
* * * * * *
59930434 TGCAACTTTAGTGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGA
131 TACAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTACAACGTCAAAGAGATAAGA
59930499 TTCGCCATCTTCAATCTGCCTCAT
196 TTCGCCATCTTCAATCTGCCTCAT
*
59930523 TGCAACTTC-AGGAGGATAAAACTTGCTTACTT-AGTCTGCTGCACTGCAACTTCAGGGAGATAA
1 TGCAACTTCAAGG-GGATAAAACTTGCTTACTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAA
* * * * *
59930586 GACTAGATGTGATATGCTCT-CTGCAACTTCAGAAAGATAAGATCTGTGATTTTAATTCGCTCCA
65 GACCAGATATGATATACTCTACTGCAACTTCAGAAAGATAAGATCTGTGATTTTAATCCACTCCA
* * *
59930650 CTACAACTTCAGGGATATAGGATTATTGGCTTTAATCTGCTCCATTACACCGTCAAAG-GAGTAA
130 CTACAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTACAACGTCAAAGAGA-TAA
59930714 GATTC
194 GATTC
59930719 ACCGTCATGG
Statistics
Matches: 171, Mismatches: 23, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
216 2 0.01
217 97 0.57
218 47 0.27
219 25 0.15
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (219 bp):
TGCAACTTCAAGGGGATAAAACTTGCTTACTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAG
ACCAGATATGATATACTCTACTGCAACTTCAGAAAGATAAGATCTGTGATTTTAATCCACTCCAC
TACAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTACAACGTCAAAGAGATAAGA
TTCGCCATCTTCAATCTGCCTCAT
Found at i:59931317 original size:131 final size:131
Alignment explanation
Indices: 59930966--59931592 Score: 1033
Period size: 131 Copynumber: 4.8 Consensus size: 131
59930956 TGTCGGTGCA
* *
59930966 GGAAGGCAAGATCTGCTTCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATTTGCTATCTT
1 GGAAGACAAGATCTGC-TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTT
*
59931031 CGATCTACTTCACGCCAATACATGAAGACAAGATCAACTTTCTTCGATCTACTTCGCCACCAATA
65 CGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAATA
59931096 TG
130 TG
* * * *
59931098 GGAAGACAAGATCTGCATCTTCAATCAATTTCCTACCAATATAGGAAGATAGGATCTGCTATCTT
1 GGAAGACAAGATCTGC-TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTT
* * * *
59931163 CGATCTACTTCACACCAATACATGAAGACAAGATCTCCTTTCTTCGATTTACTTCGCCACTAATA
65 CGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAATA
59931228 TG
130 TG
*
59931230 GGAAGACAAGATCTAG-TCTTCGATCCGCTTCCTACCAATATAGGAAGACAGGATCTGCTATCTT
1 GGAAGACAAGATCT-GCTCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTT
*
59931294 CGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTGCGCCACCAATA
65 CGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAATA
59931359 TG
130 TG
*
59931361 GGAAGACAAGATCTAG-TCTTCGATCCACTTCCTACCAATATAGGAAGAAAGGATCTGCTATCTT
1 GGAAGACAAGATCT-GCTCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTT
* *
59931425 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTA
65 CGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAATA
59931490 TG
130 TG
*
59931492 GGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGTTATCTT
1 GGAAGACAAGATCTGC-TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTT
*
59931557 CGATCTACTTCACTCCAATACATGAAGACAAGATCT
65 CGATCTACTTCACGCCAATACATGAAGACAAGATCT
59931593 GCTATTTTTT
Statistics
Matches: 462, Mismatches: 30, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
130 1 0.00
131 245 0.53
132 215 0.47
133 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (131 bp):
GGAAGACAAGATCTGCTCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTC
GATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAATAT
G
Found at i:59931515 original size:263 final size:263
Alignment explanation
Indices: 59930966--59931592 Score: 1053
Period size: 263 Copynumber: 2.4 Consensus size: 263
59930956 TGTCGGTGCA
* * *
59930966 GGAAGGCAAGATCTGCTTCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATTTGCTATCTT
1 GGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTT
* *
59931031 CGATCTACTTCACGCCAATACATGAAGACAAGATCAACTTTCTTCGATCTACTTCGCCACCAATA
66 CGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTGCGCCACCAATA
* *
59931096 TGGGAAGACAAGATCTGCATCTTCAATCAATTTCCTACCAATATAGGAAGATAGGATCTGCTATC
131 TGGGAAGACAAGATCTG-ATCTTCAATCAACTTCCTACCAATATAGGAAGAAAGGATCTGCTATC
* *
59931161 TTCGATCTACTTCACACCAATACATGAAGACAAGATCTCCTTTCTTCGATTTACTTCGCCACTAA
195 TTCGATCTACTTCACACCAATACATGAAGACAAGATCTCCTTTCTTCGATCTACTTCGCCACCAA
59931226 TATG
260 TATG
*
59931230 GGAAGACAAGATCT--AGTCTTCGATCCGCTTCCTACCAATATAGGAAGACAGGATCTGCTATCT
1 GGAAGACAAGATCTGCA-TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCT
59931293 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTGCGCCACCAAT
65 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTGCGCCACCAAT
* *
59931358 ATGGGAAGACAAGATCT-AGTCTTCGATCCACTTCCTACCAATATAGGAAGAAAGGATCTGCTAT
130 ATGGGAAGACAAGATCTGA-TCTTCAATCAACTTCCTACCAATATAGGAAGAAAGGATCTGCTAT
* *
59931422 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCA
194 CTTCGATCTACTTCACACCAATACATGAAGACAAGATCTCCTTTCTTCGATCTACTTCGCCACCA
*
59931487 GTATG
259 ATATG
*
59931492 GGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGTTATCTT
1 GGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTT
*
59931557 CGATCTACTTCACTCCAATACATGAAGACAAGATCT
66 CGATCTACTTCACGCCAATACATGAAGACAAGATCT
59931593 GCTATTTTTT
Statistics
Matches: 341, Mismatches: 18, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
261 1 0.00
262 120 0.35
263 206 0.60
264 14 0.04
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (263 bp):
GGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTT
CGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTGCGCCACCAATA
TGGGAAGACAAGATCTGATCTTCAATCAACTTCCTACCAATATAGGAAGAAAGGATCTGCTATCT
TCGATCTACTTCACACCAATACATGAAGACAAGATCTCCTTTCTTCGATCTACTTCGCCACCAAT
ATG
Found at i:59943310 original size:15 final size:15
Alignment explanation
Indices: 59943292--59943326 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
59943282 TACAAATGCT
59943292 ACAATAATAAATACA
1 ACAATAATAAATACA
59943307 ACAATAATAAATACA
1 ACAATAATAAATACA
*
59943322 TCAAT
1 ACAAT
59943327 GGCATAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.63, C:0.14, G:0.00, T:0.23
Consensus pattern (15 bp):
ACAATAATAAATACA
Found at i:59943720 original size:22 final size:23
Alignment explanation
Indices: 59943695--59943743 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
59943685 ATATATGTAT
*
59943695 AAATACAAAAATATTTATTAAAAA
1 AAATACAAAAATATTCA-TAAAAA
* *
59943719 ATATAGAAAAATATTCATAAAAA
1 AAATACAAAAATATTCATAAAAA
59943742 AA
1 AA
59943744 TATAAATATA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (23 bp):
AAATACAAAAATATTCATAAAAA
Found at i:59943756 original size:24 final size:24
Alignment explanation
Indices: 59943701--59943747 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
59943691 GTATAAATAC
* *
59943701 AAAAATATTTATTAAAAAATATAG
1 AAAAATATTCATAAAAAAATATAG
59943725 AAAAATATTCATAAAAAAATATA
1 AAAAATATTCATAAAAAAATATA
59943748 AATATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AAAAATATTCATAAAAAAATATAG
Found at i:59943761 original size:24 final size:24
Alignment explanation
Indices: 59943714--59943761 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
59943704 AATATTTATT
*
59943714 AAAAAATATAGAAAAATATTCATA
1 AAAAAATATAGAAAAATATACATA
*
59943738 AAAAAATATA-AATATATATACATA
1 AAAAAATATAGAA-AAATATACATA
59943762 TGTAGATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 19 0.90
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (24 bp):
AAAAAATATAGAAAAATATACATA
Found at i:59947013 original size:42 final size:42
Alignment explanation
Indices: 59946915--59947000 Score: 145
Period size: 42 Copynumber: 2.0 Consensus size: 42
59946905 CAATTGAATC
*
59946915 ACTAGAAACACAATTCAAAACCTCAATTTAGAATGTAAATAG
1 ACTAGAAACGCAATTCAAAACCTCAATTTAGAATGTAAATAG
* *
59946957 ACTAGAAACGCAATTCGAAACCTCAGTTTAGAATGTAAATAG
1 ACTAGAAACGCAATTCAAAACCTCAATTTAGAATGTAAATAG
59946999 AC
1 AC
59947001 ATGTTTACCA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.47, C:0.17, G:0.13, T:0.23
Consensus pattern (42 bp):
ACTAGAAACGCAATTCAAAACCTCAATTTAGAATGTAAATAG
Found at i:59951275 original size:34 final size:34
Alignment explanation
Indices: 59951237--59951302 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
59951227 TGATGGATTG
* *
59951237 AAGTAGAATATTAAGATAAAAAATTTAAACATTT
1 AAGTAAAAGATTAAGATAAAAAATTTAAACATTT
* *
59951271 AAGTAAAAGATTAAGATGAAAATTTTAAACAT
1 AAGTAAAAGATTAAGATAAAAAATTTAAACAT
59951303 ATTAGTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.56, C:0.03, G:0.11, T:0.30
Consensus pattern (34 bp):
AAGTAAAAGATTAAGATAAAAAATTTAAACATTT
Found at i:59951471 original size:19 final size:18
Alignment explanation
Indices: 59951420--59951471 Score: 54
Period size: 19 Copynumber: 2.9 Consensus size: 18
59951410 TTATTATAAT
59951420 ATTATTTTAAT--TTTTA
1 ATTATTTTAATAATTTTA
* *
59951436 AATATTTTAGTATATTTTA
1 ATTATTTTAATA-ATTTTA
59951455 ATTATATTTAATAATTT
1 ATTAT-TTTAATAATTT
59951472 GAATAATGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
16 9 0.32
19 13 0.46
20 6 0.21
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
ATTATTTTAATAATTTTA
Found at i:59951646 original size:16 final size:16
Alignment explanation
Indices: 59951610--59951646 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
59951600 CTCATAAATT
*
59951610 AATAT-TTTATTTTTA
1 AATATATTTATTTTGA
59951625 AA-ATATTTATTTTGA
1 AATATATTTATTTTGA
59951640 AATATAT
1 AATATAT
59951647 CCTATTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 2 0.11
15 13 0.68
16 4 0.21
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (16 bp):
AATATATTTATTTTGA
Found at i:59952039 original size:6 final size:6
Alignment explanation
Indices: 59952028--59952067 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
59952018 CTTTTCCTAG
*
59952028 CACCAT CACCAT CACCAT CACCAT CACCAT CACCAC CACC
1 CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT CACC
59952068 GTTCACCCAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.33, C:0.55, G:0.00, T:0.12
Consensus pattern (6 bp):
CACCAT
Found at i:59953245 original size:33 final size:33
Alignment explanation
Indices: 59953192--59953263 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
59953182 TCAGGTGGGG
*
59953192 TGGAGGGCTGACGATAGGCGGCACCAATGCTGA
1 TGGAGGACTGACGATAGGCGGCACCAATGCTGA
* * * *
59953225 TGGAGGACTGGCGATTGGCGGCACCAGTGCTGG
1 TGGAGGACTGACGATAGGCGGCACCAATGCTGA
59953258 TGGAGG
1 TGGAGG
59953264 GTTAACAGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.19, C:0.19, G:0.44, T:0.17
Consensus pattern (33 bp):
TGGAGGACTGACGATAGGCGGCACCAATGCTGA
Found at i:59958187 original size:17 final size:17
Alignment explanation
Indices: 59958161--59958193 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
59958151 TTAATTTAAA
*
59958161 TAAATTATTTTCTCAAT
1 TAAATCATTTTCTCAAT
59958178 TAAATCATTTTCTCAA
1 TAAATCATTTTCTCAA
59958194 CCTCATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAATCATTTTCTCAAT
Found at i:59960642 original size:11 final size:11
Alignment explanation
Indices: 59960628--59960652 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
59960618 TTATTAATTC
59960628 ATTATTTTAAT
1 ATTATTTTAAT
59960639 ATTATTTTAAT
1 ATTATTTTAAT
59960650 ATT
1 ATT
59960653 GGCTGAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
ATTATTTTAAT
Found at i:59971993 original size:124 final size:124
Alignment explanation
Indices: 59971773--59972001 Score: 458
Period size: 124 Copynumber: 1.8 Consensus size: 124
59971763 TCAACGAAAC
59971773 TAGTAGATTGCTTCCACTTGAATACTATATGTATTCGAAGAAAGCATGATGGTATAAAAATATAA
1 TAGTAGATTGCTTCCACTTGAATACTATATGTATTCGAAGAAAGCATGATGGTATAAAAATATAA
59971838 TCTTTCAAAAATATTTTTAAATTTTAATATATACATATTATTTTTTGACCGCTTTAGCT
66 TCTTTCAAAAATATTTTTAAATTTTAATATATACATATTATTTTTTGACCGCTTTAGCT
59971897 TAGTAGATTGCTTCCACTTGAATACTATATGTATTCGAAGAAAGCATGATGGTATAAAAATATAA
1 TAGTAGATTGCTTCCACTTGAATACTATATGTATTCGAAGAAAGCATGATGGTATAAAAATATAA
59971962 TCTTTCAAAAATATTTTTAAATTTTAATATATACATATTA
66 TCTTTCAAAAATATTTTTAAATTTTAATATATACATATTA
59972002 AATACATACC
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
124 105 1.00
ACGTcount: A:0.38, C:0.10, G:0.11, T:0.40
Consensus pattern (124 bp):
TAGTAGATTGCTTCCACTTGAATACTATATGTATTCGAAGAAAGCATGATGGTATAAAAATATAA
TCTTTCAAAAATATTTTTAAATTTTAATATATACATATTATTTTTTGACCGCTTTAGCT
Found at i:59974323 original size:17 final size:18
Alignment explanation
Indices: 59974301--59974336 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
59974291 ATATTGAATG
59974301 TGGAAAGA-AATATGTTT
1 TGGAAAGACAATATGTTT
*
59974318 TGGAAAGACTATATGTTT
1 TGGAAAGACAATATGTTT
59974336 T
1 T
59974337 TCATCAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.36, C:0.03, G:0.22, T:0.39
Consensus pattern (18 bp):
TGGAAAGACAATATGTTT
Found at i:59978032 original size:31 final size:32
Alignment explanation
Indices: 59977973--59978037 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
59977963 GGCAAATTAC
*
59977973 AAGAGTGATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
59978005 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
59978036 AA
1 AA
59978038 ATTATCTAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 13 0.41
32 19 0.59
ACGTcount: A:0.46, C:0.12, G:0.11, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:59980735 original size:23 final size:24
Alignment explanation
Indices: 59980699--59980760 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 24
59980689 AGGCAACTTT
**
59980699 TTTTTTGCGCTTTTTGCTTCTT-C-
1 TTTTTTGCTTTTTTTGCTT-TTGCG
* *
59980722 TTTTTTTCTTTTTTTTCTTTTGCG
1 TTTTTTGCTTTTTTTGCTTTTGCG
59980746 TTTTTTGCTTTTTTT
1 TTTTTTGCTTTTTTT
59980761 TGCTGTTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
22 2 0.06
23 16 0.50
24 14 0.44
ACGTcount: A:0.00, C:0.15, G:0.10, T:0.76
Consensus pattern (24 bp):
TTTTTTGCTTTTTTTGCTTTTGCG
Found at i:59980736 original size:24 final size:25
Alignment explanation
Indices: 59980709--59980764 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 25
59980699 TTTTTTGCGC
*
59980709 TTTTTGCTTCTT-C-TTTTTTTCTTT
1 TTTTTGCTT-TTGCGTTTTTTGCTTT
59980733 TTTTT-CTTTTGCGTTTTTTGCTTT
1 TTTTTGCTTTTGCGTTTTTTGCTTT
59980757 TTTTTGCT
1 TTTTTGCT
59980765 GTTTTTGCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 2 0.07
23 4 0.14
24 20 0.71
25 2 0.07
ACGTcount: A:0.00, C:0.14, G:0.09, T:0.77
Consensus pattern (25 bp):
TTTTTGCTTTTGCGTTTTTTGCTTT
Found at i:59980800 original size:9 final size:9
Alignment explanation
Indices: 59980739--59980800 Score: 51
Period size: 9 Copynumber: 7.1 Consensus size: 9
59980729 CTTTTTTTTC
*
59980739 TTTTGCGTT
1 TTTTGCTTT
59980748 TTTTGCTTTT
1 TTTTGC-TTT
*
59980758 TTTTGCTGT
1 TTTTGCTTT
59980767 TTTTGCTATT
1 TTTTGCT-TT
*
59980777 TTTT--ATT
1 TTTTGCTTT
59980784 TTTT--TTT
1 TTTTGCTTT
59980791 TTTTGCTTT
1 TTTTGCTTT
59980800 T
1 T
59980801 ATTTAAAGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
7 12 0.27
9 19 0.43
10 13 0.30
ACGTcount: A:0.03, C:0.08, G:0.11, T:0.77
Consensus pattern (9 bp):
TTTTGCTTT
Found at i:59981399 original size:31 final size:32
Alignment explanation
Indices: 59981340--59981404 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
59981330 GGAAAATTAC
* *
59981340 AAGAGTGATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATACTAATAAAAACTCTTTA
59981372 AAGAGTAATTGAATACTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATACTAATAAAAACTCTTTA
59981403 AA
1 AA
59981405 ATTATCTAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 13 0.42
32 18 0.58
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATACTAATAAAAACTCTTTA
Found at i:59983512 original size:11 final size:11
Alignment explanation
Indices: 59983496--59983538 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
59983486 CCATTTTCTA
59983496 AATAAAATACT
1 AATAAAATACT
59983507 AAT-AAATATCT
1 AATAAAATA-CT
*
59983518 AAGTAAAATATT
1 AA-TAAAATACT
59983530 AATAAAATA
1 AATAAAATA
59983539 ATATTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 14 0.50
12 4 0.14
13 5 0.18
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATACT
Found at i:59983524 original size:23 final size:23
Alignment explanation
Indices: 59983492--59983535 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
59983482 ACTACCATTT
59983492 TCTAAATAAAATACTAATAAATA
1 TCTAAATAAAATACTAATAAATA
* *
59983515 TCTAAGTAAAATATTAATAAA
1 TCTAAATAAAATACTAATAAA
59983536 ATAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.32
Consensus pattern (23 bp):
TCTAAATAAAATACTAATAAATA
Found at i:59984463 original size:27 final size:27
Alignment explanation
Indices: 59984425--59984478 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
59984415 TGTTACAAAC
*
59984425 ATATAAATGTAGATGTTTATATTCTAA
1 ATATAAATGTAGATGTCTATATTCTAA
59984452 ATATAAATGTAGATGTCTATATTCTAA
1 ATATAAATGTAGATGTCTATATTCTAA
59984479 CACCTTCATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.41, C:0.06, G:0.11, T:0.43
Consensus pattern (27 bp):
ATATAAATGTAGATGTCTATATTCTAA
Found at i:59988307 original size:5 final size:6
Alignment explanation
Indices: 59988268--59988306 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
59988258 TTCCACGTCA
* *
59988268 TTTTCA TTTTCA TTTTCG TTTTCG TTTTCG TTTT-G TTTT
1 TTTTCG TTTTCG TTTTCG TTTTCG TTTTCG TTTTCG TTTT
59988307 GCACGCAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.05, C:0.13, G:0.10, T:0.72
Consensus pattern (6 bp):
TTTTCG
Found at i:59990807 original size:13 final size:13
Alignment explanation
Indices: 59990789--59990814 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
59990779 AAAGTGCGAG
59990789 CCTGTTGAAGACA
1 CCTGTTGAAGACA
59990802 CCTGTTGAAGACA
1 CCTGTTGAAGACA
59990815 ATATGCAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (13 bp):
CCTGTTGAAGACA
Found at i:59998840 original size:7 final size:7
Alignment explanation
Indices: 59998830--59998854 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
59998820 ATATTATATA
59998830 TATTATT
1 TATTATT
59998837 TATTATT
1 TATTATT
59998844 TATTATT
1 TATTATT
59998851 TATT
1 TATT
59998855 TCGGTTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TATTATT
Found at i:59999210 original size:14 final size:14
Alignment explanation
Indices: 59999169--59999215 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
59999159 AAATTTAAGA
*
59999169 TTTAGTCTTTATAT
1 TTTAGTTTTTATAT
59999183 TTT--TTTTTA-A-
1 TTTAGTTTTTATAT
59999193 TTTAGTTTTTATAT
1 TTTAGTTTTTATAT
59999207 TTTAGTTTT
1 TTTAGTTTT
59999216 AAGATAATGA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
10 3 0.11
11 1 0.04
12 11 0.39
13 1 0.04
14 12 0.43
ACGTcount: A:0.19, C:0.02, G:0.06, T:0.72
Consensus pattern (14 bp):
TTTAGTTTTTATAT
Found at i:59999919 original size:17 final size:18
Alignment explanation
Indices: 59999897--59999939 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
59999887 AAAAATAAAC
59999897 TTTTAAATAATTTTT-AT
1 TTTTAAATAATTTTTAAT
*
59999914 TTTTAAA-AGTTTTTAAAT
1 TTTTAAATAATTTTT-AAT
59999932 TTTTAAAT
1 TTTTAAAT
59999940 TTTTAAGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 6 0.27
17 7 0.32
18 9 0.41
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
TTTTAAATAATTTTTAAT
Found at i:59999936 original size:8 final size:8
Alignment explanation
Indices: 59999912--59999945 Score: 50
Period size: 8 Copynumber: 4.0 Consensus size: 8
59999902 AATAATTTTT
59999912 ATTTTTAAA
1 ATTTTT-AA
59999921 AGTTTTTAA
1 A-TTTTTAA
59999930 ATTTTTAA
1 ATTTTTAA
59999938 ATTTTTAA
1 ATTTTTAA
59999946 GATACTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 15 0.62
9 4 0.17
10 5 0.21
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (8 bp):
ATTTTTAA
Found at i:60004827 original size:29 final size:29
Alignment explanation
Indices: 60004795--60004854 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
60004785 TTAATTCTAA
60004795 AAAGGGGAAAATAAA-GAAATTAAAAAGAT
1 AAAGGGG-AAATAAACGAAATTAAAAAGAT
*
60004824 AAAGGTGAAATAAACGAAATTAAAAAGAT
1 AAAGGGGAAATAAACGAAATTAAAAAGAT
60004853 AA
1 AA
60004855 TCTGGTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 7 0.24
29 22 0.76
ACGTcount: A:0.65, C:0.02, G:0.18, T:0.15
Consensus pattern (29 bp):
AAAGGGGAAATAAACGAAATTAAAAAGAT
Found at i:60005076 original size:17 final size:16
Alignment explanation
Indices: 60005053--60005095 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
60005043 CTATTAGTAG
*
60005053 TTTTTTATATTCATAT
1 TTTTTTATATTCATAA
*
60005069 TATTTTTATA-ACATAA
1 T-TTTTTATATTCATAA
60005085 TTTTTTATATT
1 TTTTTTATATT
60005096 TTATTTTTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
15 8 0.36
16 6 0.27
17 8 0.36
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTTTTATATTCATAA
Found at i:60010980 original size:20 final size:20
Alignment explanation
Indices: 60010957--60010994 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
60010947 ATGGTTTTTG
60010957 TTAATTAAATCAA-CATTAGT
1 TTAATT-AATCAACCATTAGT
60010977 TTAATTAATCAACCATTA
1 TTAATTAATCAACCATTA
60010995 ACTATACCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39
Consensus pattern (20 bp):
TTAATTAATCAACCATTAGT
Found at i:60011653 original size:20 final size:20
Alignment explanation
Indices: 60011617--60011654 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
60011607 AATAAAAATC
*
60011617 AATAAAAATTATTAAATTGT
1 AATAAAAATTATAAAATTGT
60011637 AATAAAATATT-TAAAATT
1 AATAAAA-ATTATAAAATT
60011655 TATTAGAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (20 bp):
AATAAAAATTATAAAATTGT
Found at i:60011686 original size:9 final size:9
Alignment explanation
Indices: 60011672--60011783 Score: 61
Period size: 9 Copynumber: 12.0 Consensus size: 9
60011662 AATTAGAAAA
60011672 AAAAATTAT
1 AAAAATTAT
**
60011681 AAAAATCGT
1 AAAAATTAT
60011690 AAAAA-TAT
1 AAAAATTAT
*
60011698 AAACAATTGT
1 AAA-AATTAT
*
60011708 AAAATTTTAT
1 AAAA-ATTAT
*
60011718 AAAAATCAT
1 AAAAATTAT
60011727 GAAAAAATTATT
1 --AAAAATTA-T
60011739 AAAAAATTA-
1 -AAAAATTAT
60011748 AAGAAA-TAT
1 AA-AAATTAT
*
60011757 -AAAATTCCT
1 AAAAATT-AT
60011766 AAAAATTAT
1 AAAAATTAT
*
60011775 AAGAATTAT
1 AAAAATTAT
60011784 CGTACCAATA
Statistics
Matches: 79, Mismatches: 13, Indels: 22
0.69 0.11 0.19
Matches are distributed among these distances:
7 3 0.04
8 10 0.13
9 31 0.39
10 18 0.23
11 16 0.20
12 1 0.01
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Found at i:60011977 original size:19 final size:19
Alignment explanation
Indices: 60011953--60011991 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
60011943 GTTAAAGGGC
60011953 ATTTTTTATGCA-TTTTATA
1 ATTTTTTATG-ATTTTTATA
60011972 ATTTTTTATGATTTTTATA
1 ATTTTTTATGATTTTTATA
60011991 A
1 A
60011992 AATTTTACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 1 0.05
19 18 0.95
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (19 bp):
ATTTTTTATGATTTTTATA
Found at i:60011997 original size:19 final size:19
Alignment explanation
Indices: 60011956--60011998 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
60011946 AAAGGGCATT
**
60011956 TTTTATGCATTTTATAATT
1 TTTTATGCATTTTATAAAA
60011975 TTTTATG-ATTTTTATAAAA
1 TTTTATGCA-TTTTATAAAA
60011994 TTTTA
1 TTTTA
60011999 CAATTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (19 bp):
TTTTATGCATTTTATAAAA
Found at i:60012015 original size:20 final size:19
Alignment explanation
Indices: 60011992--60012036 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
60011982 ATTTTTATAA
60011992 AATTTTACAATTTTTTTTCT
1 AATTTTAC-ATTTTTTTTCT
* *
60012012 AATTCTACGTTTTTTTTCT
1 AATTTTACATTTTTTTTCT
60012031 AATTTT
1 AATTTT
60012037 TAATAAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.22, C:0.11, G:0.02, T:0.64
Consensus pattern (19 bp):
AATTTTACATTTTTTTTCT
Found at i:60012054 original size:19 final size:20
Alignment explanation
Indices: 60012032--60012077 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
60012022 TTTTTTTCTA
60012032 ATTTTTAATAAATTTTAAT-
1 ATTTTTAATAAATTTTAATG
* * *
60012051 ATTTTTTATAATTTTTATTG
1 ATTTTTAATAAATTTTAATG
60012071 ATTTTTA
1 ATTTTTA
60012078 TTTTTTGAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
ATTTTTAATAAATTTTAATG
Found at i:60012057 original size:10 final size:10
Alignment explanation
Indices: 60012030--60012077 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
60012020 GTTTTTTTTC
60012030 TAATTTTTAA
1 TAATTTTTAA
*
60012040 TAAATTTTAA
1 TAATTTTTAA
*
60012050 T-ATTTTTTA
1 TAATTTTTAA
*
60012059 TAATTTTTAT
1 TAATTTTTAA
*
60012069 TGATTTTTA
1 TAATTTTTA
60012078 TTTTTTGAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
9 7 0.23
10 24 0.77
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:60012353 original size:87 final size:88
Alignment explanation
Indices: 60012197--60012465 Score: 247
Period size: 87 Copynumber: 3.1 Consensus size: 88
60012187 CAAAAAGCTT
* * * * * *
60012197 TTTTTTATGCGTTTTGATAGTTCAAGTACTCAATTGAGTGTAAAAAAATGCAGGGACTTAATTGC
1 TTTTTTATGCATTTTGAAAGTTCAAGTACCCAACTGAGTGTAAAAAAACGCAGGGACATAATTGC
***
60012262 TTTTTTTTTAAA-TTAGAGGGCC
66 TTTTTTGAAAAAGTTAGAGGGCC
* * * *
60012284 TTTTTTATGCATTTTGAAATTTCAAGTACCCAACTGAGTG-CAAAAAACGTAGGGGCATAATTGC
1 TTTTTTATGCATTTTGAAAGTTCAAGTACCCAACTGAGTGTAAAAAAACGCAGGGACATAATTGC
* *
60012348 TTTTTTTGAAAAAGTTTGAGGGTC
66 -TTTTTTGAAAAAGTTAGAGGGCC
* * * * ** * * * *
60012372 TTTTTAATGCATTTTAAAAGTTCAAGTATCCAATTGAACAGAAAAAAAAAAGCAGGGGCTTAATT
1 TTTTTTATGCATTTTGAAAGTTCAAGTACCCAACTG-AGTG-TAAAAAAACGCAGGGACATAATT
* *
60012437 ACTTTTTTGAAAAAGTTTGAGGG-C
64 GCTTTTTTGAAAAAGTTAGAGGGCC
60012461 TTTTT
1 TTTTT
60012466 ACACCCTTAA
Statistics
Matches: 150, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
86 19 0.13
87 44 0.29
88 39 0.26
89 8 0.05
90 21 0.14
91 19 0.13
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (88 bp):
TTTTTTATGCATTTTGAAAGTTCAAGTACCCAACTGAGTGTAAAAAAACGCAGGGACATAATTGC
TTTTTTGAAAAAGTTAGAGGGCC
Found at i:60012396 original size:88 final size:87
Alignment explanation
Indices: 60012197--60012466 Score: 276
Period size: 88 Copynumber: 3.1 Consensus size: 87
60012187 CAAAAAGCTT
* * * * * *
60012197 TTTTTTATGCGTTTTGATAGTTCAAGTACTCAATTGAGTGTAAAAAAATGCAGGGACTTAATTGC
1 TTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTG-AAAAAAAAGCAGGGGCTTAATTGC
** *
60012262 TTTTTTT-TTAAA-TTAGAGGGCC
65 TTTTTTTGAAAAAGTTTGAGGG-C
* * * * * * *
60012284 TTTTTTATGCATTTTGAAATTTCAAGTACCCAACTGAGTGCAAAAAACGTAGGGGCATAATTGCT
1 TTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGAAAAAAAAGCAGGGGCTTAATTGCT
60012349 TTTTTTGAAAAAGTTTGAGGGTC
66 TTTTTTGAAAAAGTTTGAGGG-C
* * **
60012372 TTTTTAATGCATTTTAAAAGTTCAAGTATCCAATTGAACAGAAAAAAAAAAGCAGGGGCTTAATT
1 TTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTG---AGTGAAAAAAAAGCAGGGGCTTAATT
*
60012437 AC-TTTTTTGAAAAAGTTTGAGGGC
63 GCTTTTTTTGAAAAAGTTTGAGGGC
60012461 TTTTTA
1 TTTTTA
60012467 CACCCTTAAG
Statistics
Matches: 152, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
86 26 0.17
87 38 0.25
88 39 0.26
89 7 0.05
90 21 0.14
91 21 0.14
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.38
Consensus pattern (87 bp):
TTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGAAAAAAAAGCAGGGGCTTAATTGCT
TTTTTTGAAAAAGTTTGAGGGC
Found at i:60012511 original size:22 final size:23
Alignment explanation
Indices: 60012485--60012542 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 23
60012475 AGCCTATATA
60012485 TTATAAAAAATAATAT-ATTTAT
1 TTATAAAAAATAATATAATTTAT
* **
60012507 TTATAAAAAGTGCTATAATTTAT
1 TTATAAAAAATAATATAATTTAT
*
60012530 TTATAAGAAATAA
1 TTATAAAAAATAA
60012543 ATTTTCTAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
22 13 0.46
23 15 0.54
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.41
Consensus pattern (23 bp):
TTATAAAAAATAATATAATTTAT
Found at i:60014108 original size:22 final size:22
Alignment explanation
Indices: 60014083--60014129 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
60014073 ATTGACATCT
60014083 CATAGGTTATAGGTGGCCAGGG
1 CATAGGTTATAGGTGGCCAGGG
60014105 CATAGGTTATAGGTGGCCAGGG
1 CATAGGTTATAGGTGGCCAGGG
60014127 CAT
1 CAT
60014130 TGTGACCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.23, C:0.15, G:0.38, T:0.23
Consensus pattern (22 bp):
CATAGGTTATAGGTGGCCAGGG
Found at i:60015922 original size:22 final size:24
Alignment explanation
Indices: 60015883--60015933 Score: 63
Period size: 22 Copynumber: 2.2 Consensus size: 24
60015873 GTTTAGAAAC
60015883 TAAATAATTGAAACAATT-TAAA-
1 TAAATAATTGAAACAATTATAAAT
*
60015905 TAAATAATT-AAATTAATTATAAAT
1 TAAATAATTGAAA-CAATTATAAAT
60015929 TAAAT
1 TAAAT
60015934 TGGAAATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 3 0.12
22 13 0.52
23 4 0.16
24 5 0.20
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (24 bp):
TAAATAATTGAAACAATTATAAAT
Found at i:60028781 original size:6 final size:6
Alignment explanation
Indices: 60028772--60028800 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
60028762 TTTGTTTTGC
60028772 TTCAAT TTCAAT TTCAAT TTCAAT TTCAA
1 TTCAAT TTCAAT TTCAAT TTCAAT TTCAA
60028801 ACTTCTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.48
Consensus pattern (6 bp):
TTCAAT
Found at i:60029303 original size:62 final size:62
Alignment explanation
Indices: 60029228--60029351 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
60029218 TGGACGGCAC
60029228 GGTGAATTGTGGAGTCTAGGGTTCACATGTAATATATGTTGAAACTTCATTTTTATTAAATT
1 GGTGAATTGTGGAGTCTAGGGTTCACATGTAATATATGTTGAAACTTCATTTTTATTAAATT
60029290 GGTGAATTGTGGAGTCTAGGGTTCACATGTAATATATGTTGAAACTTCATTTTTATTAAATT
1 GGTGAATTGTGGAGTCTAGGGTTCACATGTAATATATGTTGAAACTTCATTTTTATTAAATT
60029352 ATCTCAGTTT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (62 bp):
GGTGAATTGTGGAGTCTAGGGTTCACATGTAATATATGTTGAAACTTCATTTTTATTAAATT
Found at i:60031753 original size:140 final size:140
Alignment explanation
Indices: 60031501--60031922 Score: 790
Period size: 140 Copynumber: 3.0 Consensus size: 140
60031491 TTAAAAACCA
60031501 TATGATCTCTTGGTGAACTTCATCCTATGTGATAAAATTCTTAATCCAGACTCTCACTATTCTTT
1 TATGATCTCTTGGTGAACTTCATCCTATGTGATAAAATTCTTAATCCAGACTCTCACTATTCTTT
60031566 CTTGGATAAGCCTTGTATGTCTTTTAGAAAAGAGCTTCAAATGCTTATATGACAATGAAACCAGA
66 CTTGGATAAGCCTTGTATGTCTTTTAGAAAAGAGCTTCAAATGCTTATATGACAATGAAACCAGA
60031631 TTTAAGTGGT
131 TTTAAGTGGT
*
60031641 TATGATCTCTAGGTGAACTTCATCCTATGTGATAAAATTCTTAATCCAGACTCTCACTATTCTTT
1 TATGATCTCTTGGTGAACTTCATCCTATGTGATAAAATTCTTAATCCAGACTCTCACTATTCTTT
60031706 CTTGGATAAGCCTTGTATGTCTTTTAGAAAAGAGCTTCAAATGCTTATATGACAATGAAACCAGA
66 CTTGGATAAGCCTTGTATGTCTTTTAGAAAAGAGCTTCAAATGCTTATATGACAATGAAACCAGA
60031771 TTTAAGTGGT
131 TTTAAGTGGT
*
60031781 TACGATCTCTTGGTGAACTTCATCCTATGTGATAAAATTCTTAATCCAGACTCTCACTCATTCTT
1 TATGATCTCTTGGTGAACTTCATCCTATGTGATAAAATTCTTAATCCAGACTCTCACT-ATTCTT
* * *
60031846 TCTAGGATAAGCCTTGTATGTCTTTTAGAAAAGAGCTTCAAATGATTATATGATAATGAAACCAG
65 TCTTGGATAAGCCTTGTATGTCTTTTAGAAAAGAGCTTCAAATGCTTATATGACAATGAAACCAG
60031911 ATTTAAGTGGT
130 ATTTAAGTGGT
60031922 T
1 T
60031923 TTTATGTTTT
Statistics
Matches: 275, Mismatches: 6, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
140 195 0.71
141 80 0.29
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.37
Consensus pattern (140 bp):
TATGATCTCTTGGTGAACTTCATCCTATGTGATAAAATTCTTAATCCAGACTCTCACTATTCTTT
CTTGGATAAGCCTTGTATGTCTTTTAGAAAAGAGCTTCAAATGCTTATATGACAATGAAACCAGA
TTTAAGTGGT
Found at i:60036598 original size:33 final size:33
Alignment explanation
Indices: 60036555--60036715 Score: 196
Period size: 33 Copynumber: 4.6 Consensus size: 33
60036545 AAGATAGGGT
*
60036555 GGAATTAGCACTTAGCAACCACCAATGATTCGG
1 GGAATCAGCACTTAGCAACCACCAATGATTCGG
*
60036588 GGAATCAGCACTTAGCAACCGCCAATGATTCGG
1 GGAATCAGCACTTAGCAACCACCAATGATTCGG
* * *
60036621 AGAATCAGCACTTAGCAACCCATTTCACATTCAAGTTACGG
1 GGAATCAGCACTTAGCAA-CCA---C-CAAT-GA-TT-CGG
60036662 TGGAATCAGCACTTAGCAACCACCAATGATTCGG
1 -GGAATCAGCACTTAGCAACCACCAATGATTCGG
60036696 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
60036716 CCTTGAGGGA
Statistics
Matches: 110, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
33 68 0.62
34 5 0.05
35 2 0.02
36 1 0.01
37 4 0.04
38 4 0.04
39 1 0.01
40 2 0.02
41 6 0.05
42 17 0.15
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (33 bp):
GGAATCAGCACTTAGCAACCACCAATGATTCGG
Found at i:60036711 original size:108 final size:109
Alignment explanation
Indices: 60036483--60036715 Score: 378
Period size: 108 Copynumber: 2.1 Consensus size: 109
60036473 CTTGGTGGAT
* * * * *
60036483 TCAGCACTTAGCAACCACTAGTGATTCGGGGAATTAGCACTTAGCAACCCCTTTCACATTCAAAG
1 TCAGCACTTAGCAACCACCAATGATTCGGAGAATCAGCACTTAGCAACCCATTTCACATTCAAAG
* *
60036548 ATAGGGTGGAATTAGCACTTAGCAACCACCAATGATTCGGGGAA
66 ATACGGTGGAATCAGCACTTAGCAACCACCAATGATTCGGGGAA
*
60036592 TCAGCACTTAGCAACCGCCAATGATTCGGAGAATCAGCACTTAGCAACCCATTTCACATTC-AAG
1 TCAGCACTTAGCAACCACCAATGATTCGGAGAATCAGCACTTAGCAACCCATTTCACATTCAAAG
*
60036656 TTACGGTGGAATCAGCACTTAGCAACCACCAATGATTCGGGGAA
66 ATACGGTGGAATCAGCACTTAGCAACCACCAATGATTCGGGGAA
60036700 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
60036716 CCTTGAGGGA
Statistics
Matches: 115, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
108 60 0.52
109 55 0.48
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (109 bp):
TCAGCACTTAGCAACCACCAATGATTCGGAGAATCAGCACTTAGCAACCCATTTCACATTCAAAG
ATACGGTGGAATCAGCACTTAGCAACCACCAATGATTCGGGGAA
Found at i:60036725 original size:27 final size:29
Alignment explanation
Indices: 60036663--60036743 Score: 96
Period size: 33 Copynumber: 2.8 Consensus size: 29
60036653 AAGTTACGGT
60036663 GGAATCAGCACTTAGCAACCACCAATGATTCGG
1 GGAATCAGCACTTAGCAACC-CCAATGA-T--G
*
60036696 GGAATCAGCACTTAGCAACCCC-TTGA-G
1 GGAATCAGCACTTAGCAACCCCAATGATG
60036723 GGAATCAGCAC-TAGCAACCCC
1 GGAATCAGCACTTAGCAACCCC
60036744 CTTTATATTC
Statistics
Matches: 47, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
26 10 0.21
27 12 0.26
31 3 0.06
32 2 0.04
33 20 0.43
ACGTcount: A:0.32, C:0.31, G:0.21, T:0.16
Consensus pattern (29 bp):
GGAATCAGCACTTAGCAACCCCAATGATG
Found at i:60038130 original size:77 final size:77
Alignment explanation
Indices: 60038001--60038150 Score: 232
Period size: 77 Copynumber: 1.9 Consensus size: 77
60037991 CAACCCTACC
* *
60038001 CTTTTATTTAATATCATTGTACATTTCTACTTAACTCTAATTTCAATCAAACCTG-ACTCAATCC
1 CTTTTAGTTAATATCATTGTACATTTCTACTTAACTCTAATTTCAATCAAACC-GAACACAATCC
60038065 TTGTTGGAACTAT
65 TTGTTGGAACTAT
* *
60038078 CTTTTAGTTAATATCATTGTACATTTGTACTTGACTCTAATTTCAA-CTAAACCGAACACAATCC
1 CTTTTAGTTAATATCATTGTACATTTCTACTTAACTCTAATTTCAATC-AAACCGAACACAATCC
60038142 TTGTTGGAA
65 TTGTTGGAA
60038151 TTAGGGAATG
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
76 2 0.03
77 65 0.97
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.41
Consensus pattern (77 bp):
CTTTTAGTTAATATCATTGTACATTTCTACTTAACTCTAATTTCAATCAAACCGAACACAATCCT
TGTTGGAACTAT
Found at i:60042221 original size:21 final size:21
Alignment explanation
Indices: 60042195--60042250 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
60042185 TATGCCAACT
* *
60042195 GAAGCTTATAAGAGTTGAACA
1 GAAGCTCATAAGAGCTGAACA
*
60042216 GAAGCTCGTAAGAGCTGAACA
1 GAAGCTCATAAGAGCTGAACA
*
60042237 AAAGCTCATAAGAG
1 GAAGCTCATAAGAG
60042251 ATGATTCACC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.43, C:0.14, G:0.25, T:0.18
Consensus pattern (21 bp):
GAAGCTCATAAGAGCTGAACA
Found at i:60044827 original size:45 final size:45
Alignment explanation
Indices: 60044778--60044870 Score: 132
Period size: 45 Copynumber: 2.1 Consensus size: 45
60044768 ACACTTTATA
* * * * *
60044778 ATTCAATATAATCTAGTGCATGTTTTTCTTTTTCTCAAAATAGAC
1 ATTCAATATAACCCAGTGCATGTTTCTCTATTTATCAAAATAGAC
*
60044823 ATTCAATCTAACCCAGTGCATGTTTCTCTATTTATCAAAATAGAC
1 ATTCAATATAACCCAGTGCATGTTTCTCTATTTATCAAAATAGAC
60044868 ATT
1 ATT
60044871 ATTTATTAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (45 bp):
ATTCAATATAACCCAGTGCATGTTTCTCTATTTATCAAAATAGAC
Found at i:60044903 original size:16 final size:18
Alignment explanation
Indices: 60044875--60044910 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
60044865 GACATTATTT
60044875 ATTAAATTAATTTT-TCA
1 ATTAAATTAATTTTCTCA
60044892 ATTAAA-TAATTTTCTCA
1 ATTAAATTAATTTTCTCA
60044909 AT
1 AT
60044911 CCGATTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (18 bp):
ATTAAATTAATTTTCTCA
Found at i:60052835 original size:18 final size:18
Alignment explanation
Indices: 60052812--60052851 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
60052802 CCATTTGTCT
60052812 CTCACAGAAAATAATACA
1 CTCACAGAAAATAATACA
60052830 CTCACAGAAAATAATACA
1 CTCACAGAAAATAATACA
60052848 CTCA
1 CTCA
60052852 AGATTAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.53, C:0.25, G:0.05, T:0.17
Consensus pattern (18 bp):
CTCACAGAAAATAATACA
Found at i:60056392 original size:30 final size:31
Alignment explanation
Indices: 60056319--60056392 Score: 73
Period size: 30 Copynumber: 2.5 Consensus size: 31
60056309 ACACACTTAT
* * *
60056319 AATTGACATGAATTTTATGTTAAGTTCAATT
1 AATTAACATTAATTTTATGTTAAGTTCAATA
* *
60056350 AATTAATA-TAATTTTAT-TTTA-TTCAATA
1 AATTAACATTAATTTTATGTTAAGTTCAATA
60056378 ATATTAACATTAATT
1 A-ATTAACATTAATT
60056393 ACTAATTACA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
28 7 0.20
29 9 0.26
30 13 0.37
31 6 0.17
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (31 bp):
AATTAACATTAATTTTATGTTAAGTTCAATA
Found at i:60056871 original size:18 final size:17
Alignment explanation
Indices: 60056845--60056878 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
60056835 TTAGTCGTTT
60056845 TATTAATATTAATATTTG
1 TATTAATA-TAATATTTG
*
60056863 TATTTATATAATATTT
1 TATTAATATAATATTT
60056879 TTCACATTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
TATTAATATAATATTTG
Found at i:60057135 original size:11 final size:11
Alignment explanation
Indices: 60057097--60057136 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
60057087 TAAAAAAAAT
60057097 TATA-TATATAA
1 TATATTATA-AA
60057108 TATATT-TAAA
1 TATATTATAAA
60057118 T-TATTATAAA
1 TATATTATAAA
60057128 TATATTATA
1 TATATTATA
60057137 TTCAAGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
9 4 0.15
10 8 0.31
11 13 0.50
12 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
TATATTATAAA
Found at i:60058043 original size:26 final size:26
Alignment explanation
Indices: 60058007--60058063 Score: 89
Period size: 25 Copynumber: 2.2 Consensus size: 26
60057997 TAATAAGTAT
60058007 TTTTTAATTTTTTAATTTTAAAAT-AA
1 TTTTT-ATTTTTTAATTTTAAAATAAA
*
60058033 TTTTTATTTTTTATTTTTAAAATAAA
1 TTTTTATTTTTTAATTTTAAAATAAA
60058059 TTTTT
1 TTTTT
60058064 GGTATTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 17 0.59
26 12 0.41
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (26 bp):
TTTTTATTTTTTAATTTTAAAATAAA
Found at i:60058063 original size:20 final size:21
Alignment explanation
Indices: 60058038--60058082 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
60058028 AATAATTTTT
60058038 ATTTTT-TATTT-TTAAAATAA
1 ATTTTTGTATTTATTAAAA-AA
60058058 ATTTTTGGTATTTATTAAAAAA
1 ATTTTT-GTATTTATTAAAAAA
60058080 ATT
1 ATT
60058083 GGTGAGTCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.27
22 10 0.45
23 6 0.27
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (21 bp):
ATTTTTGTATTTATTAAAAAA
Found at i:60058071 original size:26 final size:25
Alignment explanation
Indices: 60058017--60058073 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
60058007 TTTTTAATTT
* * *
60058017 TTTAATTTTAAAATAATTTTTATTT
1 TTTATTTTTAAAATAATTTTTAGTA
*
60058042 TTTATTTTTAAAATAAATTTTTGGTA
1 TTTATTTTTAAAAT-AATTTTTAGTA
60058068 TTTATT
1 TTTATT
60058074 AAAAAAATTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 13 0.48
26 14 0.52
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (25 bp):
TTTATTTTTAAAATAATTTTTAGTA
Found at i:60064264 original size:29 final size:29
Alignment explanation
Indices: 60064219--60064279 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
60064209 TGTTACACAA
*
60064219 AATATTACGAGATTTGTAATAATTTGTGT
1 AATATTACGAGATTTGTAATAATTAGTGT
*
60064248 AATATTACTA-ATGTTGTAATAATTAGTGT
1 AATATTACGAGAT-TTGTAATAATTAGTGT
60064277 AAT
1 AAT
60064280 TGTGCAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (29 bp):
AATATTACGAGATTTGTAATAATTAGTGT
Found at i:60076627 original size:20 final size:20
Alignment explanation
Indices: 60076590--60076627 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
60076580 TTTATTTTTA
*
60076590 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
60076610 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
60076628 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:60079864 original size:3 final size:3
Alignment explanation
Indices: 60079858--60079896 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
60079848 AAAGATACTA
60079858 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
60079897 TCTAGACTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:60084276 original size:3 final size:3
Alignment explanation
Indices: 60084247--60084295 Score: 59
Period size: 3 Copynumber: 16.7 Consensus size: 3
60084237 TTTATTCCTC
60084247 ATT ATT A-T ATT A-T ATT AATGT -TT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT -AT-T ATT ATT ATT ATT ATT ATT ATT ATT
60084291 ATT AT
1 ATT AT
60084296 CATCATCATC
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
2 5 0.12
3 33 0.80
4 2 0.05
5 1 0.02
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:60084366 original size:3 final size:3
Alignment explanation
Indices: 60084354--60084401 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
60084344 TATATGTTTC
60084354 TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
60084401 T
1 T
60084402 ATAATTGCCT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 42 0.95
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:60086523 original size:14 final size:16
Alignment explanation
Indices: 60086509--60086545 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
60086499 AATTTTTAAA
60086509 TAATTT-TTAAAAAAT
1 TAATTTCTTAAAAAAT
*
60086524 TATTTTCTTAAAAAAT
1 TAATTTCTTAAAAAAT
60086540 TAATTT
1 TAATTT
60086546 AATTTGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
TAATTTCTTAAAAAAT
Found at i:60089555 original size:5 final size:5
Alignment explanation
Indices: 60089545--60089569 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
60089535 ATACGGTCAA
60089545 CGGGT CGGGT CGGGT CGGGT CGGGT
1 CGGGT CGGGT CGGGT CGGGT CGGGT
60089570 GGCTCCTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.60, T:0.20
Consensus pattern (5 bp):
CGGGT
Found at i:60089622 original size:27 final size:27
Alignment explanation
Indices: 60089584--60089650 Score: 125
Period size: 27 Copynumber: 2.5 Consensus size: 27
60089574 CCTATCAGGT
60089584 AGGCGCCAATGAAGGTGCCTCATAGAG
1 AGGCGCCAATGAAGGTGCCTCATAGAG
*
60089611 AGGCGCCAATGAAGGTGCCTTATAGAG
1 AGGCGCCAATGAAGGTGCCTCATAGAG
60089638 AGGCGCCAATGAA
1 AGGCGCCAATGAA
60089651 ATTTATGTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.31, C:0.21, G:0.33, T:0.15
Consensus pattern (27 bp):
AGGCGCCAATGAAGGTGCCTCATAGAG
Found at i:60089886 original size:22 final size:26
Alignment explanation
Indices: 60089831--60089903 Score: 100
Period size: 22 Copynumber: 2.9 Consensus size: 26
60089821 ATATCCCGAC
60089831 ATTACAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAA-TATAAT
60089858 ATTACAATATTCATAC-AAA-A-AA-
1 ATTACAATATTCATACAAAATATAAT
*
60089880 ATTACAATATTCATACTAAATATA
1 ATTACAATATTCATACAAAATATA
60089904 GATAATCTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
22 16 0.37
23 5 0.12
24 2 0.05
25 1 0.02
26 3 0.07
27 16 0.37
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (26 bp):
ATTACAATATTCATACAAAATATAAT
Found at i:60090180 original size:19 final size:19
Alignment explanation
Indices: 60090156--60090207 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
60090146 ACAAACACAA
60090156 AAATTTATAACATAATCCT
1 AAATTTATAACATAATCCT
60090175 AAATTTATAACATAATCCT
1 AAATTTATAACATAATCCT
60090194 AAATTT-TAA-ATAAT
1 AAATTTATAACATAAT
60090208 TTGTATGAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.15
18 3 0.09
19 25 0.76
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATTTATAACATAATCCT
Found at i:60090318 original size:22 final size:21
Alignment explanation
Indices: 60090267--60090320 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 21
60090257 GGATATATTG
60090267 TAATATTGTAATTTTTTATAT
1 TAATATTGTAATTTTTTATAT
*
60090288 GAATATTGTAATTATTTTATAAT
1 TAATATTGTAATT-TTTTAT-AT
60090311 TAAT-TTGTAA
1 TAATATTGTAA
60090321 GGATTATGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 12 0.41
22 12 0.41
23 5 0.17
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (21 bp):
TAATATTGTAATTTTTTATAT
Found at i:60090433 original size:254 final size:257
Alignment explanation
Indices: 60089951--60090450 Score: 812
Period size: 254 Copynumber: 1.9 Consensus size: 257
60089941 TGCAATTTTA
* * * * *
60089951 TATGAATATTGCAATTTTGTAATTTTGTGTGAATATTGTAATGTCGGGATATATTGTAATATTGT
1 TATGAATATTGCAATATTGAAATTTTATATGAATATTGTAATGTCAGGATATATTGTAATATTGT
60090016 AATTTTTTATATGAACATTGAAATTATTTTATAATTAATTTGTTAGTAATTTAGGATTATGTTAT
66 AATTTTTTATATGAACATTGAAATTATTTTATAATTAA-TTGTTAGTAA--TAGGATTATGTTAT
60090081 AAATTTATTAGTAACTTATTAGTAATTTTGTAATTTATTACTAATAAATTAAATGTTAAATAATT
128 AAATTTATTAGTAACTTATTAGTAATTTTGTAATTTATTACTAATAAATTAAATGTTAAATAATT
*
60090146 ACAAACACAAAAATTTATAACATAATCCTAAATTTATAACATAATCCTAAATTTTAAATAATTTG
193 ACAAACACAAAAATTTATAACATAATCCTAAATTTATAACATAACCCTAAATTTTAAATAATTTG
*
60090211 TATGAATATTGTAATATTGAAATTTTATATGAATATTGTAATGTCAGGATATATTGTAATATTGT
1 TATGAATATTGCAATATTGAAATTTTATATGAATATTGTAATGTCAGGATATATTGTAATATTGT
* *
60090276 AATTTTTTATATGAATATTGTAATTATTTTATAATTAA-T-TT-GT-A-AGGATTATGTTATAAA
66 AATTTTTTATATGAACATTGAAATTATTTTATAATTAATTGTTAGTAATAGGATTATGTTATAAA
* *
60090336 TTTATTAGTATAACTTATTAGTAATTTTGTAATTTATTACTAATAAATTGAATTTTAAATAATTA
131 TTTATTAG--TAACTTATTAGTAATTTTGTAATTTATTACTAATAAATTAAATGTTAAATAATTA
*
60090401 CAAACACAAAAATTTATAACATAATCCTAAATTTATAGCATAACCCTAAA
194 CAAACACAAAAATTTATAACATAATCCTAAATTTATAACATAACCCTAAA
60090451 CCTGAAAAAA
Statistics
Matches: 226, Mismatches: 12, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
252 24 0.11
254 101 0.45
255 1 0.00
256 2 0.01
257 2 0.01
258 1 0.00
260 95 0.42
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.45
Consensus pattern (257 bp):
TATGAATATTGCAATATTGAAATTTTATATGAATATTGTAATGTCAGGATATATTGTAATATTGT
AATTTTTTATATGAACATTGAAATTATTTTATAATTAATTGTTAGTAATAGGATTATGTTATAAA
TTTATTAGTAACTTATTAGTAATTTTGTAATTTATTACTAATAAATTAAATGTTAAATAATTACA
AACACAAAAATTTATAACATAATCCTAAATTTATAACATAACCCTAAATTTTAAATAATTTG
Found at i:60090434 original size:19 final size:19
Alignment explanation
Indices: 60090410--60090450 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
60090400 ACAAACACAA
*
60090410 AAATTTATAACATAATCCT
1 AAATTTATAACATAACCCT
*
60090429 AAATTTATAGCATAACCCT
1 AAATTTATAACATAACCCT
60090448 AAA
1 AAA
60090451 CCTGAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.17, G:0.02, T:0.32
Consensus pattern (19 bp):
AAATTTATAACATAACCCT
Found at i:60090505 original size:27 final size:27
Alignment explanation
Indices: 60090467--60090542 Score: 143
Period size: 27 Copynumber: 2.8 Consensus size: 27
60090457 AAAATCAGAG
60090467 CATTGGCGCCTCCCAGATAGGCACCAC
1 CATTGGCGCCTCCCAGATAGGCACCAC
*
60090494 CATTGGCGCCTCCCAGGTAGGCACCAC
1 CATTGGCGCCTCCCAGATAGGCACCAC
60090521 CATTGGCGCCTCCCAGATAGGC
1 CATTGGCGCCTCCCAGATAGGC
60090543 GCCAATACTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.20, C:0.39, G:0.25, T:0.16
Consensus pattern (27 bp):
CATTGGCGCCTCCCAGATAGGCACCAC
Found at i:60091777 original size:17 final size:17
Alignment explanation
Indices: 60091755--60091807 Score: 72
Period size: 17 Copynumber: 3.1 Consensus size: 17
60091745 AAAAAGGAAT
*
60091755 AATAAGAATAAAAACAA
1 AATAAGAATAAAAATAA
60091772 AATAAGAA-ACAAAATAA
1 AATAAGAATA-AAAATAA
*
60091789 AATAAAAATAAAAATAA
1 AATAAGAATAAAAATAA
60091806 AA
1 AA
60091808 ATAAAACAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 1 0.03
17 30 0.94
18 1 0.03
ACGTcount: A:0.79, C:0.04, G:0.04, T:0.13
Consensus pattern (17 bp):
AATAAGAATAAAAATAA
Found at i:60091783 original size:12 final size:11
Alignment explanation
Indices: 60091761--60091817 Score: 64
Period size: 11 Copynumber: 5.1 Consensus size: 11
60091751 GAATAATAAG
60091761 AATAAAAACAA
1 AATAAAAACAA
60091772 AATAAGAAACAA
1 AATAA-AAACAA
60091784 AATAAAATA-AA
1 AATAAAA-ACAA
*
60091795 AATAAAAATAA
1 AATAAAAACAA
60091806 AA-ATAAAACAA
1 AATA-AAAACAA
60091817 A
1 A
60091818 CTAATTAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
10 2 0.05
11 27 0.66
12 12 0.29
ACGTcount: A:0.81, C:0.05, G:0.02, T:0.12
Consensus pattern (11 bp):
AATAAAAACAA
Found at i:60091788 original size:23 final size:22
Alignment explanation
Indices: 60091761--60091817 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 22
60091751 GAATAATAAG
60091761 AATAAAAACAAAATAAGAAACAA
1 AATAAAAACAAAATAA-AAACAA
*
60091784 AATAAAATA-AAAATAAAAATAA
1 AATAAAA-ACAAAATAAAAACAA
60091806 AA-ATAAAACAAA
1 AATA-AAAACAAA
60091818 CTAATTAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 2 0.07
22 13 0.43
23 14 0.47
24 1 0.03
ACGTcount: A:0.81, C:0.05, G:0.02, T:0.12
Consensus pattern (22 bp):
AATAAAAACAAAATAAAAACAA
Found at i:60091798 original size:6 final size:6
Alignment explanation
Indices: 60091755--60091813 Score: 61
Period size: 6 Copynumber: 10.2 Consensus size: 6
60091745 AAAAAGGAAT
* * *
60091755 AATAAG AATAAA AA-CAA AATAAGA AA-CAA AAT-AA AATAAA AATAAA
1 AATAAA AATAAA AATAAA AATAA-A AATAAA AATAAA AATAAA AATAAA
60091801 AATAAA AATAAA A
1 AATAAA AATAAA A
60091814 CAAACTAATT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 12 0.27
6 30 0.67
7 3 0.07
ACGTcount: A:0.80, C:0.03, G:0.03, T:0.14
Consensus pattern (6 bp):
AATAAA
Found at i:60091813 original size:17 final size:17
Alignment explanation
Indices: 60091755--60091813 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
60091745 AAAAAGGAAT
* *
60091755 AATAAGAATAAAAACAA
1 AATAAAAATAAAAATAA
*
60091772 AATAAGAAA-CAAAATAA
1 AATAA-AAATAAAAATAA
60091789 AATAAAAATAAAAATAAA
1 AATAAAAATAAAAAT-AA
60091807 AATAAAA
1 AATAAAA
60091814 CAAACTAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
16 3 0.09
17 21 0.60
18 11 0.31
ACGTcount: A:0.80, C:0.03, G:0.03, T:0.14
Consensus pattern (17 bp):
AATAAAAATAAAAATAA
Found at i:60091994 original size:27 final size:28
Alignment explanation
Indices: 60091964--60092097 Score: 107
Period size: 27 Copynumber: 4.8 Consensus size: 28
60091954 TAAAAATAAA
* *
60091964 AATAAAAATATTAGTAATAATAAA-AGT
1 AATAATAATATTAATAATAATAAATAGT
* *
60091991 AATAGTAATAGTAATAATAA-AAATAGT
1 AATAATAATATTAATAATAATAAATAGT
* * *
60092018 AATATTAATATTAATTATAAT-AATAAT
1 AATAATAATATTAATAATAATAAATAGT
* * *
60092045 GATAATGATAATAATAATAATGATAAT-GAT
1 AATAATAATATTAATAATAAT-A-AATAG-T
60092075 AATAATAATGA-TAATAATAATAA
1 AATAATAAT-ATTAATAATAATAA
60092098 TAATAATGAC
Statistics
Matches: 84, Mismatches: 16, Indels: 13
0.74 0.14 0.12
Matches are distributed among these distances:
26 3 0.04
27 57 0.68
28 1 0.01
29 1 0.01
30 21 0.25
31 1 0.01
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (28 bp):
AATAATAATATTAATAATAATAAATAGT
Found at i:60092038 original size:6 final size:6
Alignment explanation
Indices: 60091928--60092104 Score: 140
Period size: 6 Copynumber: 29.5 Consensus size: 6
60091918 ACAGTTTAAA
* * * ** * * * *
60091928 AATAAA AATAAT GATAAT AATAGT GGTAAA AATAAA AATAAA AATATT
1 AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT
* * * * * *
60091976 AGTAAT AATAA- AAGTAAT AGTAAT AGTAAT AATAAA AATAGT AATATT
1 AATAAT AATAAT AA-TAAT AATAAT AATAAT AATAAT AATAAT AATAAT
* * * * *
60092024 AATATT AATTAT AATAAT AATGAT AATGAT AATAAT AATAAT GATAAT
1 AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT
* *
60092072 GATAAT AATAAT GATAAT AATAAT AATAAT AAT
1 AATAAT AATAAT AATAAT AATAAT AATAAT AAT
60092105 GACAAAAATG
Statistics
Matches: 139, Mismatches: 30, Indels: 4
0.80 0.17 0.02
Matches are distributed among these distances:
5 2 0.01
6 136 0.98
7 1 0.01
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (6 bp):
AATAAT
Found at i:60094501 original size:2 final size:2
Alignment explanation
Indices: 60094494--60094544 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
60094484 AATAAACAGA
60094494 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
60094536 AG AG AG AG A
1 AG AG AG AG A
60094545 ATAATTTCTC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:60100991 original size:18 final size:17
Alignment explanation
Indices: 60100958--60100996 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
60100948 TTTTATAAAT
60100958 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
60100976 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
60100993 TGTG
1 TGTG
60100997 TAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:60101251 original size:23 final size:23
Alignment explanation
Indices: 60101225--60101320 Score: 138
Period size: 23 Copynumber: 4.2 Consensus size: 23
60101215 GTTATTGATC
*
60101225 AGTGGTAGCTTCGGCTACATTTT
1 AGTGGTAGCTTCGGCTACATATT
*
60101248 AGTGGTAGCTACGGCTACATATT
1 AGTGGTAGCTTCGGCTACATATT
* *
60101271 AGTGGTAGCTTCGGCTACGTATC
1 AGTGGTAGCTTCGGCTACATATT
* *
60101294 AGTGGTAGCTTCGGCTAGATAAT
1 AGTGGTAGCTTCGGCTACATATT
60101317 AGTG
1 AGTG
60101321 TGGCACTTAT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 64 1.00
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (23 bp):
AGTGGTAGCTTCGGCTACATATT
Found at i:60102942 original size:51 final size:51
Alignment explanation
Indices: 60102884--60103003 Score: 215
Period size: 51 Copynumber: 2.4 Consensus size: 51
60102874 ACTTCTGATC
60102884 AGTGACAAGTGATAAATGGTAGCTTTAGCTACACTTATCTGATC-AGTGACA
1 AGTGACAAGTGATAAATGGTAGCTTTAGCTACACTTATCTGATCAAG-GACA
*
60102935 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGGACA
1 AGTGACAAGTGATAAATGGTAGCTTTAGCTACACTTATCTGATCAAGGACA
60102986 AGTGACAAGTGATAAATG
1 AGTGACAAGTGATAAATG
60103004 TGATCCCTGT
Statistics
Matches: 66, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
51 64 0.97
52 2 0.03
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (51 bp):
AGTGACAAGTGATAAATGGTAGCTTTAGCTACACTTATCTGATCAAGGACA
Found at i:60104826 original size:25 final size:25
Alignment explanation
Indices: 60104798--60104847 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
60104788 CCATGCTTAT
60104798 AATGCTTATGCTATATGTGTATTTG
1 AATGCTTATGCTATATGTGTATTTG
*
60104823 AATGCTTATTCTATATGTGTATTTG
1 AATGCTTATGCTATATGTGTATTTG
60104848 GCTAACATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.08, G:0.18, T:0.50
Consensus pattern (25 bp):
AATGCTTATGCTATATGTGTATTTG
Found at i:60105359 original size:51 final size:51
Alignment explanation
Indices: 60105301--60105420 Score: 215
Period size: 51 Copynumber: 2.4 Consensus size: 51
60105291 ACTTCTGATC
60105301 AGTGACAAGTGATAAATGGTAGCTTTAGCTACACTTATCTGATC-AGTGACA
1 AGTGACAAGTGATAAATGGTAGCTTTAGCTACACTTATCTGATCAAG-GACA
*
60105352 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGGACA
1 AGTGACAAGTGATAAATGGTAGCTTTAGCTACACTTATCTGATCAAGGACA
60105403 AGTGACAAGTGATAAATG
1 AGTGACAAGTGATAAATG
60105421 TGATCCCTGT
Statistics
Matches: 66, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
51 64 0.97
52 2 0.03
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (51 bp):
AGTGACAAGTGATAAATGGTAGCTTTAGCTACACTTATCTGATCAAGGACA
Found at i:60116662 original size:6 final size:6
Alignment explanation
Indices: 60116651--60116695 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
60116641 ATCAAGGATG
* * *
60116651 GGGGAA GGGGAA GAGGAA GAGGAA GAGGAA GGGGAA GGGGAA GGG
1 GGGGAA GGGGAA GGGGAA GGGGAA GGGGAA GGGGAA GGGGAA GGG
60116696 AAGATTTGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (6 bp):
GGGGAA
Found at i:60122134 original size:134 final size:135
Alignment explanation
Indices: 60121972--60122233 Score: 386
Period size: 135 Copynumber: 1.9 Consensus size: 135
60121962 GCATTTAATT
** *
60121972 CATTCTACTAAAAAAATGGACAGCTTAGTTTTTATACGTTAGATCAAAGAGCAAACTAGT-TATT
1 CATTCTACTAAAAAAATGGACAGCTTAGTCCTTATACGTTAGATCAAAGAGCAAACTAGTCCATT
*
60122036 TTGTTAAAAATTCATCCATTTTTACT-AGTAAAAAATAGTCAACGTATGTTAGCATGAGATACAT
66 TTGTTAAAAATTCATCCATTTTTACTGA-TAAAAAATAATCAACGTATGTTAGCATGAGATACAT
60122100 GTTGTC
130 GTTGTC
** *
60122106 CATTCTACTAAAAAAATAGG-CATTTTAGTCCTTATACGTTTGATCAAAGAGCAAACTAGTCCAT
1 CATTCTACTAAAAAAAT-GGACAGCTTAGTCCTTATACGTTAGATCAAAGAGCAAACTAGTCCAT
* * **
60122170 TTTGTTAAAATTTCATCCATTTTTACTGATAAAAAATAATCAATGTATGTTAGTGTGAGATACA
65 TTTGTTAAAAATTCATCCATTTTTACTGATAAAAAATAATCAACGTATGTTAGCATGAGATACA
60122234 CATGACATGC
Statistics
Matches: 114, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
134 52 0.46
135 61 0.54
136 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.35
Consensus pattern (135 bp):
CATTCTACTAAAAAAATGGACAGCTTAGTCCTTATACGTTAGATCAAAGAGCAAACTAGTCCATT
TTGTTAAAAATTCATCCATTTTTACTGATAAAAAATAATCAACGTATGTTAGCATGAGATACATG
TTGTC
Found at i:60136317 original size:69 final size:69
Alignment explanation
Indices: 60136220--60136847 Score: 563
Period size: 69 Copynumber: 9.1 Consensus size: 69
60136210 GTAAACTTTG
* * * * * *
60136220 TTTTTACAACTGGGAGCTTTGCTCTCGCTAACTATTTTAGAAGCCGTGGCTCTTCGCCTGCGAAC
1 TTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTAGAGGCTGCGGCTCTTCGCCTACAAAC
* *
60136285 TTTG
66 CTTA
** * * * * * * *
60136289 TTTTTACAATTGGGAGTTTTACTCTCGCTAACTGTTTTAGAGTCTACGGCTTTTTGCCTACAAAC
1 TTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTAGAGGCTGCGGCTCTTCGCCTACAAAC
60136354 CTTA
66 CTTA
* * * * *
60136358 TTTTTACAGCTGGGAGCTTCGCTCTCGCTAACTAGTTTAGAGGTTGCAGCTCTTCACCTACAAAC
1 TTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTAGAGGCTGCGGCTCTTCGCCTACAAAC
60136423 CTTA
66 CTTA
* * * * * * * ***
60136427 TTTTCACAACTGGGAGCTTTACTCTCGCTAACTGTTTTAGAGGCTACGACTCTTCACCTGTGAAC
1 TTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTAGAGGCTGCGGCTCTTCGCCTACAAAC
*
60136492 CTTG
66 CTTA
* * * * * * * * *** ** *
60136496 TTTTTACAGCTGGAAACTTAGCTTTAGCTAACTGTTTTAGAGGCTGCGACTTTTCTTTTATGAAT
1 TTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTAGAGGCTGCGGCTCTTCGCCTACAAAC
*
60136561 TTTA
66 CTTA
** * ** * * * * **
60136565 TTTCCACACCTGGGAGCTTTGCTCTCTTTAGCTATTTTAGAGGTTGTGACTCTTTTCCTACAAAC
1 TTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTAGAGGCTGCGGCTCTTCGCCTACAAAC
*
60136630 CTTG
66 CTTA
* * * * * *
60136634 TTTTTACAGTTGGAAGCTTTACTCTCGCTAACTGTTTTAGAAGCTGCGGCTCTTCGCCTATAAAC
1 TTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTAGAGGCTGCGGCTCTTCGCCTACAAAC
*
60136699 CTTG
66 CTTA
* * * * * *
60136703 TTTTCACAGTTGAGAGCTTTGCTCTTGCTAACTATTTTAGAGGTTGCGGCTCTTCACCTACAAAC
1 TTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTAGAGGCTGCGGCTCTTCGCCTACAAAC
60136768 CTTA
66 CTTA
* * * *
60136772 TTTTTACAGCTGGGAACTTTGCTCTCGCTAACTATTTTAGAGGCTACGGCTCTTCGCCTGCGAAC
1 TTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTAGAGGCTGCGGCTCTTCGCCTACAAAC
60136837 CTTA
66 CTTA
60136841 TTTTTAC
1 TTTTTAC
60136848 CGATGATAAT
Statistics
Matches: 438, Mismatches: 121, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
69 438 1.00
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.38
Consensus pattern (69 bp):
TTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTAGAGGCTGCGGCTCTTCGCCTACAAAC
CTTA
Found at i:60136794 original size:207 final size:206
Alignment explanation
Indices: 60136212--60136847 Score: 666
Period size: 207 Copynumber: 3.1 Consensus size: 206
60136202 ATTTGCCTGT
* * * * *
60136212 AAACTTTGTTTTTACAACTGGGAGCTTTGCTCTCGCTAACTATTTTAGAAGCCGTGGCTCTTCGC
1 AAACCTTGTTTTTACAACTGGGAGCTTTACTCTCGCTAACTGTTTTAGAAGCTGCGGCTCTTCGC
* * * * * * *
60136277 CTGCGAACTTTGTTTTTACAATTGGGAGTTTTACTCTCGCTAACTGTTTTAGA-GTCTACGGCTT
66 CTGTGAACCTTGTTTTTACAGTT-GGAGCTTTGCTCTTGCTAACTGTTTTAGAGGT-TGCGGCTT
** * *
60136341 TTTGCCTACAAACCTTATTTTTACAGCTGGGAGCTTCGCTCTCGCTAACTAGTTTAGAGGTTGCA
129 TTCACCTACAAACCTTATTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTAGAGGTTGCA
60136406 GCTCTTCACCTAC
194 GCTCTTCACCTAC
* * * * * *
60136419 AAACCTTATTTTCACAACTGGGAGCTTTACTCTCGCTAACTGTTTTAGAGGCTACGACTCTTCAC
1 AAACCTTGTTTTTACAACTGGGAGCTTTACTCTCGCTAACTGTTTTAGAAGCTGCGGCTCTTCGC
* * * * *
60136484 CTGTGAACCTTGTTTTTACAGCTGGAAACTTAGCT-TTAGCTAACTGTTTTAGAGGCTGCGACTT
66 CTGTGAACCTTGTTTTTACAGTTGG-AGCTTTGCTCTT-GCTAACTGTTTTAGAGGTTGCGGCTT
*** ** ** ** * ** * *
60136548 TTCTTTTATGAATTTTATTTCCACACCTGGGAGCTTTGCTCTCTTTAGCTATTTTAGAGGTTG-T
129 TTCACCTACAAACCTTATTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTAGAGGTTGCA
**
60136612 GACTCTTTTCCTAC
194 G-CTCTTCACCTAC
** *
60136626 AAACCTTGTTTTTACAGTTGGAAGCTTTACTCTCGCTAACTGTTTTAGAAGCTGCGGCTCTTCGC
1 AAACCTTGTTTTTACAACTGGGAGCTTTACTCTCGCTAACTGTTTTAGAAGCTGCGGCTCTTCGC
* * * * *
60136691 CTATAAACCTTGTTTTCACAGTTGAGAGCTTTGCTCTTGCTAACTATTTTAGAGGTTGCGGCTCT
66 CTGTGAACCTTGTTTTTACAGTTG-GAGCTTTGCTCTTGCTAACTGTTTTAGAGGTTGCGGCTTT
* * * *
60136756 TCACCTACAAACCTTATTTTTACAGCTGGGAACTTTGCTCTCGCTAACTATTTTAGAGGCTACGG
130 TCACCTACAAACCTTATTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTAGAGGTTGCAG
* *
60136821 CTCTTCGCCTGC
195 CTCTTCACCTAC
* *
60136833 GAACCTTATTTTTAC
1 AAACCTTGTTTTTAC
60136848 CGATGATAAT
Statistics
Matches: 339, Mismatches: 83, Indels: 14
0.78 0.19 0.03
Matches are distributed among these distances:
206 4 0.01
207 330 0.97
208 5 0.01
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.38
Consensus pattern (206 bp):
AAACCTTGTTTTTACAACTGGGAGCTTTACTCTCGCTAACTGTTTTAGAAGCTGCGGCTCTTCGC
CTGTGAACCTTGTTTTTACAGTTGGAGCTTTGCTCTTGCTAACTGTTTTAGAGGTTGCGGCTTTT
CACCTACAAACCTTATTTTTACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTAGAGGTTGCAGC
TCTTCACCTAC
Found at i:60153886 original size:142 final size:141
Alignment explanation
Indices: 60153630--60154197 Score: 830
Period size: 142 Copynumber: 4.0 Consensus size: 141
60153620 ATTAAGTGAG
* * * * * *
60153630 GAAATCTAGGCCACATTTGGGCATTACTTGCAAACAAGGGCTTATTGTAACCGTTATTTAAGACG
1 GAAATCTAGGCCACACTTGGACATAACTTGCAAACAAGGGCTTATTGTAACCATTACTTAAGA-T
* * *
60153695 GTCCTCTAACTATATTGTCGGTTCTAAGTGAAATGAGCTTGAAACCGATGCTTACGTAGGGAAGG
65 GTCCTCGAACTATATTGTCGGTTCTAAATGAAATGAACTTGAAACCGATGCTTACGTAGGGAAGG
60153760 AATCAGTGAATT
130 AATCAGTGAATT
* *
60153772 GAAATCTAGGCCACACTTGTACATAACTTGCAAACAAGGGCTTAATGTAACCATTACTTAAGATG
1 GAAATCTAGGCCACACTTGGACATAACTTGCAAACAAGGGCTTATTGTAACCATTACTTAAGATG
*
60153837 TTCCTCGAACTATATTGTCGGTTCTAAGTGAAATGAACTTGAAACCGATGCTTACGTAGGGAAGG
66 -TCCTCGAACTATATTGTCGGTTCTAAATGAAATGAACTTGAAACCGATGCTTACGTAGGGAAGG
60153902 AATCAGTGAATT
130 AATCAGTGAATT
* ** **
60153914 GAAATCTAGGCCACACTTGGATATAACTTGCAAACAAGGTTTTATTGTAACTGTTACTTAAGATA
1 GAAATCTAGGCCACACTTGGACATAACTTGCAAACAAGGGCTTATTGTAACCATTACTTAAGAT-
*
60153979 GTCCTCGAACTATATTGTCGCTTCTAAATGAAATGAACTTGAAACCGATGCTTACGTAGGGAAGG
65 GTCCTCGAACTATATTGTCGGTTCTAAATGAAATGAACTTGAAACCGATGCTTACGTAGGGAAGG
60154044 AATCAGTGAATT
130 AATCAGTGAATT
* * * * *
60154056 GAAATCTAGGCCACATTTGGACATAACTTGCAAACAGGGGTTTACTGTAACCATTACTTAAGACA
1 GAAATCTAGGCCACACTTGGACATAACTTGCAAACAAGGGCTTATTGTAACCATTACTTAAGA-T
** * * *
60154121 GTCCTTAAACTATGTGGTCGGTTCTAAATGAAATGAACTTGAAACCAATGCTTACGTAGGGAAGG
65 GTCCTCGAACTATATTGTCGGTTCTAAATGAAATGAACTTGAAACCGATGCTTACGTAGGGAAGG
**
60154186 AATTGGTGAATT
130 AATCAGTGAATT
60154198 CCCATAAAGA
Statistics
Matches: 388, Mismatches: 35, Indels: 6
0.90 0.08 0.01
Matches are distributed among these distances:
141 1 0.00
142 386 0.99
143 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (141 bp):
GAAATCTAGGCCACACTTGGACATAACTTGCAAACAAGGGCTTATTGTAACCATTACTTAAGATG
TCCTCGAACTATATTGTCGGTTCTAAATGAAATGAACTTGAAACCGATGCTTACGTAGGGAAGGA
ATCAGTGAATT
Found at i:60166130 original size:28 final size:28
Alignment explanation
Indices: 60166086--60166140 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
60166076 GTAGATGGGT
60166086 AATAAAAGTTTCAGTAGCAAGTATCTTA
1 AATAAAAGTTTCAGTAGCAAGTATCTTA
*
60166114 AATAAAAGTTTCGGTAGCAAGTATCTT
1 AATAAAAGTTTCAGTAGCAAGTATCTT
60166141 TGACTTGACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.33
Consensus pattern (28 bp):
AATAAAAGTTTCAGTAGCAAGTATCTTA
Found at i:60181119 original size:22 final size:21
Alignment explanation
Indices: 60181084--60181217 Score: 77
Period size: 19 Copynumber: 6.7 Consensus size: 21
60181074 AAAGGGTATC
* *
60181084 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
60181105 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
60181128 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
60181147 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
60181166 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* * *
60181185 TATATAT--TATATCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
60181204 TGCATATCATATCT
1 TACAAATCATATCT
60181218 AAGATTGCAT
Statistics
Matches: 94, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
17 2 0.02
19 60 0.64
21 7 0.07
22 15 0.16
23 10 0.11
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:60181127 original size:23 final size:22
Alignment explanation
Indices: 60181084--60181141 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
60181074 AAAGGGTATC
* *
60181084 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
60181105 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
60181128 TGCATATCATATCT
1 TACAAATCATATCT
60181142 AAGATTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:60181144 original size:19 final size:19
Alignment explanation
Indices: 60181120--60181230 Score: 177
Period size: 19 Copynumber: 5.8 Consensus size: 19
60181110 AATCATATCT
60181120 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
60181139 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
60181158 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
60181177 TCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATA
60181196 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
60181215 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
60181231 CCTGAAGATT
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 82 1.00
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:60181167 original size:38 final size:38
Alignment explanation
Indices: 60181120--60181223 Score: 199
Period size: 38 Copynumber: 2.7 Consensus size: 38
60181110 AATCATATCT
60181120 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
*
60181158 TCTAAGATTGCATATCATATCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
60181196 TCTAAGATTGCATATCATATCTAAGATT
1 TCTAAGATTGCATATCATATCTAAGATT
60181224 GCATATCCCT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 65 1.00
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.40
Consensus pattern (38 bp):
TCTAAGATTGCATATCATATCTAAGATTATATATCATA
Found at i:60181785 original size:132 final size:132
Alignment explanation
Indices: 60181557--60182714 Score: 1998
Period size: 132 Copynumber: 8.8 Consensus size: 132
60181547 TAGGACTTAC
* * *
60181557 AATCTTCAACCTATTCCACTGCTGACCAGGG-AGATATG-ATTACTGGCTTCAATGTACTCCACT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAG-TA-GAATTACTGGCTTCAATGTACTCCACT
* *
60181620 GTAACCACAGGGAGGTAAAATCCGCCATTTTCGATATGCTCCACTACTGCTTAGGGAGATAAGAT
64 GTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
*
60181685 CTGG
129 CTGA
* * *
60181689 AATCTTCAATATATTCTACCGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
* * * *
60181754 AACCACAGGGATGTAAAATCTGTCATCTTCGATCTGCTCCATTACTGCTTAGGGAGATAAGATCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
60181819 GA
131 GA
*
60181821 AATCTTCAACCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
60181886 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
60181951 GA
131 GA
*
60181953 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
* *
60182018 AACCACAGGGAGGTAAAATCCGTCATCTTCGATCTGCTCCATTACTGCTTAGGGAGATAAGATCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
60182083 GA
131 GA
*
60182085 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
60182150 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
60182215 GA
131 GA
*
60182217 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCACTGT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
* *
60182282 AACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTT-GGGAGATAAGACCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
*
60182346 AA
131 GA
* * *
60182348 AATCTTTAATCTATTCCACTGTTGTCCAGGGAAGTAAAATTACTAGCTTCAATGTACTCCACTGT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
60182413 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
60182478 GA
131 GA
*
60182480 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
* * * *
60182545 AACTACAGGGAGGTAAAATCCGACATCTTCGATCTGCTCCACTACGGTTTAGGGAGATAAGATCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
60182610 GA
131 GA
*
60182612 AATCTTCAATCTATTCCACTGTTGTTCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
60182677 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCT
60182715 TCGCTGTCAA
Statistics
Matches: 974, Mismatches: 49, Indels: 6
0.95 0.05 0.01
Matches are distributed among these distances:
131 127 0.13
132 845 0.87
133 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
GA
Found at i:60182409 original size:43 final size:43
Alignment explanation
Indices: 60182088--60182542 Score: 125
Period size: 44 Copynumber: 10.4 Consensus size: 43
60182078 GATCTGAAAT
* * *
60182088 CTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGG
1 CTTCAATCTACTCCACTGTTGTCCAGGGAAGTAAAATTACTAG
* * *** * ** * *
60182131 CTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGTTGTC-CAGGGAAGTAAAAT-TACTAG
* * ** * * * *
60182176 CTTCGATCTGCTCCACTACTG-CTTAGGG-AGATAAGATCTGA-AAT
1 CTTCAATCTACTCCACTGTTGTC-CAGGGAAG-TAAAAT-T-ACTAG
* *
60182220 CTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTAG
1 CTTCAATCTACTCCACTGTTGTCCAGGGAAGTAAAATTACTAG
* *** * * * *
60182263 CTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCAT
1 CTTCAATCTACTCCACTGTTGTC-CAGGGAAGTAAAAT-TACTAG
* * ** ** ** ** *
60182308 CTTCGATCTGCTCCACTACTG-CTTGGG-AGATAAGACCTAAAAT
1 CTTCAATCTACTCCACTGTTGTCCAGGGAAG-TAA-AATTACTAG
* *
60182351 CTTTAATCTATTCCACTGTTGTCCAGGGAAGTAAAATTACTAG
1 CTTCAATCTACTCCACTGTTGTCCAGGGAAGTAAAATTACTAG
* *** * ** * *
60182394 CTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGTTGTC-CAGGGAAGTAAAAT-TACTAG
* * ** * * * *
60182439 CTTCGATCTGCTCCACTACTG-CTTAGGG-AGATAAGATCTGA-AAT
1 CTTCAATCTACTCCACTGTTGTC-CAGGGAAG-TAAAAT-T-ACTAG
* * *
60182483 CTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGG
1 CTTCAATCTACTCCACTGTTGTCCAGGGAAGTAAAATTACTAG
*
60182526 CTTCAATGTACTCCACT
1 CTTCAATCTACTCCACT
60182543 ATAACTACAG
Statistics
Matches: 280, Mismatches: 112, Indels: 40
0.65 0.26 0.09
Matches are distributed among these distances:
42 3 0.01
43 100 0.36
44 120 0.43
45 57 0.20
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (43 bp):
CTTCAATCTACTCCACTGTTGTCCAGGGAAGTAAAATTACTAG
Found at i:60182559 original size:527 final size:528
Alignment explanation
Indices: 60181557--60182714 Score: 2025
Period size: 527 Copynumber: 2.2 Consensus size: 528
60181547 TAGGACTTAC
* * *
60181557 AATCTTCAACCTATTCCACTGCTGACCAGGG-AGATATG-ATTACTGGCTTCAATGTACTCCACT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAG-TA-GAATTACTGGCTTCAATGTACTCCACT
* *
60181620 GTAACCACAGGGAGGTAAAATCCGCCATTTTCGATATGCTCCACTACTGCTTAGGGAGATAAGAT
64 GTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
* * *
60181685 CTGGAATCTTCAATATATTCTACCGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCA
129 CTGAAATCTTCAATATATTCCACCGTTGTCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCA
* *** *
60181750 CTGTAACCACAGGGATGTAAAATCTGTCATCTTCGATCTGCTCCATTACTGCTTAGGGAGATAAG
194 CTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
* * * *
60181815 ATCTGAAATCTTCAACCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTC
259 ACCTAAAATCTTCAACCTATTCCACTGTTGTCCAGGGAAGTAAAATTACTAGCTTCAATGTACTC
60181880 CACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
324 CACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
60181945 AGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTAC
389 AGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTAC
* * *
60182010 TCCACTATAACCACAGGGAGGTAAAATCCGTCATCTTCGATCTGCTCCATTACTGCTTAGGGAGA
454 TCCACTATAACCACAGGGAGGTAAAATCCGACATCTTCGATCTGCTCCACTACGGCTTAGGGAGA
60182075 TAAGATCTGA
519 TAAGATCTGA
*
60182085 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
60182150 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
* *
60182215 GAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCACT
131 GAAATCTTCAATATATTCCACCGTTGTCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCACT
60182280 GTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTT-GGGAGATAAGAC
196 GTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAC
* *
60182344 CTAAAATCTTTAATCTATTCCACTGTTGTCCAGGGAAGTAAAATTACTAGCTTCAATGTACTCCA
261 CTAAAATCTTCAACCTATTCCACTGTTGTCCAGGGAAGTAAAATTACTAGCTTCAATGTACTCCA
60182409 CTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
326 CTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
60182474 ATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTC
391 ATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTC
* *
60182539 CACTATAACTACAGGGAGGTAAAATCCGACATCTTCGATCTGCTCCACTACGGTTTAGGGAGATA
456 CACTATAACCACAGGGAGGTAAAATCCGACATCTTCGATCTGCTCCACTACGGCTTAGGGAGATA
60182604 AGATCTGA
521 AGATCTGA
*
60182612 AATCTTCAATCTATTCCACTGTTGTTCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
60182677 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCT
60182715 TCGCTGTCAA
Statistics
Matches: 599, Mismatches: 29, Indels: 5
0.95 0.05 0.01
Matches are distributed among these distances:
527 371 0.62
528 226 0.38
529 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (528 bp):
AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
GAAATCTTCAATATATTCCACCGTTGTCCAGGGAAGTAGAATTACTAGCTTCAATGTACTCCACT
GTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAC
CTAAAATCTTCAACCTATTCCACTGTTGTCCAGGGAAGTAAAATTACTAGCTTCAATGTACTCCA
CTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
ATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTC
CACTATAACCACAGGGAGGTAAAATCCGACATCTTCGATCTGCTCCACTACGGCTTAGGGAGATA
AGATCTGA
Found at i:60184934 original size:57 final size:60
Alignment explanation
Indices: 60184841--60184988 Score: 187
Period size: 57 Copynumber: 2.5 Consensus size: 60
60184831 ACCCTAATTC
* * * *
60184841 GGATTACCCGTCCGGGCTAAATCCATTTTCCACATATTCTTCGGGAAGGCTATATC-A-A
1 GGATCACCCGTCCGGGCTAGATCCTTTTTCCACATATTCTTCGAGAAGGCTATATCGATA
* *
60184899 -GATCACCCGTTCGGGCTAGAT-CTTTTTCACACATATTCTTCGAGAGGGCTATATCAGGATA
1 GGATCACCCGTCCGGGCTAGATCCTTTTTC-CACATATTCTTCGAGAAGGCTATATC--GATA
60184960 GGATCACCCGTCCGGGCTAGATCCTTTTT
1 GGATCACCCGTCCGGGCTAGATCCTTTTT
60184989 ACCGTCAATT
Statistics
Matches: 76, Mismatches: 7, Indels: 9
0.83 0.08 0.10
Matches are distributed among these distances:
56 6 0.08
57 42 0.55
60 1 0.01
61 1 0.01
62 20 0.26
63 6 0.08
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (60 bp):
GGATCACCCGTCCGGGCTAGATCCTTTTTCCACATATTCTTCGAGAAGGCTATATCGATA
Found at i:60191908 original size:20 final size:20
Alignment explanation
Indices: 60191883--60191920 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
60191873 AAATATACAT
*
60191883 ATAGAAATTATAAAATATGG
1 ATAGAAAGTATAAAATATGG
*
60191903 ATAGAAAGTATAATATAT
1 ATAGAAAGTATAAAATAT
60191921 ATATATACGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.13, T:0.32
Consensus pattern (20 bp):
ATAGAAAGTATAAAATATGG
Found at i:60192011 original size:20 final size:20
Alignment explanation
Indices: 60191983--60192029 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
60191973 ATGATTACAT
* *
60191983 ATATATATATAAATTATAAA
1 ATATATATAGAAAGTATAAA
* *
60192003 ATATGTATAGAAAGTATAAT
1 ATATATATAGAAAGTATAAA
60192023 ATATATA
1 ATATATA
60192030 CGTACATATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.38
Consensus pattern (20 bp):
ATATATATAGAAAGTATAAA
Found at i:60192055 original size:50 final size:50
Alignment explanation
Indices: 60191895--60192056 Score: 118
Period size: 50 Copynumber: 3.1 Consensus size: 50
60191885 AGAAATTATA
* *
60191895 AAATATGGATAGAAAGTATAATATATATATATACGTACATATATATATAAGTTAAT
1 AAATATGTATAGAAAG--T-ATA-ATATATATACGTAC--ATATATATAAGATAAT
* * * * *
60191951 AAATATATAGATCATAAAG-A-AA-ATGAT-TACATATATATATATAA-ATTAT
1 AAATATGT--AT-AGAAAGTATAATAT-ATATACGTACATATATATAAGATAAT
*
60192000 AAAATATGTATAGAAAGTATAATATATATACGTACATATATATAAGGTAAT
1 -AAATATGTATAGAAAGTATAATATATATACGTACATATATATAAGATAAT
60192051 AAATAT
1 AAATAT
60192057 ATAAATCATA
Statistics
Matches: 83, Mismatches: 13, Indels: 26
0.68 0.11 0.21
Matches are distributed among these distances:
47 5 0.06
48 3 0.04
49 7 0.08
50 40 0.48
51 3 0.04
52 7 0.08
53 3 0.04
54 1 0.01
55 1 0.01
56 6 0.07
58 2 0.02
59 5 0.06
ACGTcount: A:0.52, C:0.04, G:0.09, T:0.35
Consensus pattern (50 bp):
AAATATGTATAGAAAGTATAATATATATACGTACATATATATAAGATAAT
Found at i:60192059 original size:100 final size:104
Alignment explanation
Indices: 60191875--60192087 Score: 301
Period size: 100 Copynumber: 2.1 Consensus size: 104
60191865 AATAAAAAAA
*
60191875 ATATACATATAGAAATTATAAAATATGGATAGAAAGTATAATATATATATATACGTACATATATA
1 ATATATATATAGAAATTATAAAATATGGATAGAAAG-ATAATATATATATATACGTACA-ATATA
* * *
60191940 TATAAGTTAATAAATATATAGATCATAAAGAA-AATGATTAC
64 TATAAGGTAATAAATATATAAATCATAAA-AATAATAATTAC
* *
60191981 ATATATATATATAAATTATAAAATATGTATAGAAAG-T-ATA-ATATATATACGTAC-ATATATA
1 ATATATATATAGAAATTATAAAATATGGATAGAAAGATAATATATATATATACGTACAATATATA
*
60192042 TAAGGTAATAAATATATAAATCATAAAAATAATAATTAT
66 TAAGGTAATAAATATATAAATCATAAAAATAATAATTAC
60192081 ATATATA
1 ATATATA
60192088 AACTTAAAAA
Statistics
Matches: 99, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
99 2 0.02
100 46 0.46
102 14 0.14
103 3 0.03
104 1 0.01
106 33 0.33
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.35
Consensus pattern (104 bp):
ATATATATATAGAAATTATAAAATATGGATAGAAAGATAATATATATATATACGTACAATATATA
TAAGGTAATAAATATATAAATCATAAAAATAATAATTAC
Found at i:60193972 original size:20 final size:20
Alignment explanation
Indices: 60193947--60193984 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
60193937 AAATATACAT
*
60193947 ATAGAAATTATAAAATATGG
1 ATAGAAAGTATAAAATATGG
*
60193967 ATAGAAAGTATAATATAT
1 ATAGAAAGTATAAAATAT
60193985 ATATATACGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.13, T:0.32
Consensus pattern (20 bp):
ATAGAAAGTATAAAATATGG
Done.