Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 25 of 205
Found at i:7561492 original size:25 final size:25
Alignment explanation
Indices: 7561464--7561517 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
7561454 ATACAGGTAA
*
7561464 AACAACTCGCATGATAATATGACAT
1 AACAACTCACATGATAATATGACAT
*
7561489 AACAACTCACCTGATAATATGACAT
1 AACAACTCACATGATAATATGACAT
7561514 AACA
1 AACA
7561518 CATAACACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.46, C:0.22, G:0.09, T:0.22
Consensus pattern (25 bp):
AACAACTCACATGATAATATGACAT
Found at i:7561708 original size:25 final size:23
Alignment explanation
Indices: 7561663--7561708 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
7561653 TGTAGCATGA
7561663 GTGCTCACACTCTCTAAACACAC
1 GTGCTCACACTCTCTAAACACAC
7561686 GTGCTCACACTCTCTAAACACAC
1 GTGCTCACACTCTCTAAACACAC
7561709 CATGCTGTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.39, G:0.09, T:0.22
Consensus pattern (23 bp):
GTGCTCACACTCTCTAAACACAC
Found at i:7561994 original size:17 final size:17
Alignment explanation
Indices: 7561972--7562013 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
7561962 TAACCTTATA
* *
7561972 GGTTCGTATGTAACATG
1 GGTTCGCATATAACATG
7561989 GGTTCGCATATAACATG
1 GGTTCGCATATAACATG
7562006 GGTTCGCA
1 GGTTCGCA
7562014 AAAACATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (17 bp):
GGTTCGCATATAACATG
Found at i:7562061 original size:17 final size:17
Alignment explanation
Indices: 7562041--7562073 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7562031 GCATAATATA
7562041 TAGGTTCACACATGGTG
1 TAGGTTCACACATGGTG
*
7562058 TAGGTTCGCACATGGT
1 TAGGTTCACACATGGT
7562074 TAAGGGCTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.30
Consensus pattern (17 bp):
TAGGTTCACACATGGTG
Found at i:7562139 original size:23 final size:23
Alignment explanation
Indices: 7562113--7562164 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
7562103 TACATATATC
*
7562113 ATAACAGGGTTCACACATGTTGT
1 ATAACAGGGTTCACACATGTAGT
* * *
7562136 ATAATAGGTTTTACACATGTAGT
1 ATAACAGGGTTCACACATGTAGT
7562159 ATAACA
1 ATAACA
7562165 CAGTTAACAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (23 bp):
ATAACAGGGTTCACACATGTAGT
Found at i:7563198 original size:18 final size:15
Alignment explanation
Indices: 7563162--7563192 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
7563152 CCCATTCTTC
7563162 CTCTTTTTCAATTAA
1 CTCTTTTTCAATTAA
7563177 CTCTATTTTCAATTAA
1 CTCT-TTTTCAATTAA
7563193 AACTCTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.29, C:0.19, G:0.00, T:0.52
Consensus pattern (15 bp):
CTCTTTTTCAATTAA
Found at i:7567443 original size:18 final size:17
Alignment explanation
Indices: 7567411--7567444 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7567401 AAATTCACAT
*
7567411 ATCATCATTCTCAATTC
1 ATCATCATTCACAATTC
7567428 ATCATCAATTCACAATT
1 ATCATC-ATTCACAATT
7567445 TTCTCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.35, C:0.26, G:0.00, T:0.38
Consensus pattern (17 bp):
ATCATCATTCACAATTC
Found at i:7571003 original size:7 final size:7
Alignment explanation
Indices: 7570991--7571076 Score: 92
Period size: 6 Copynumber: 12.3 Consensus size: 7
7570981 AAAAAAAGGG
7570991 TGAAAAA
1 TGAAAAA
7570998 TGAAAAAAA
1 TG--AAAAA
7571007 TG-AAAA
1 TGAAAAA
7571013 TGAAAAA
1 TGAAAAA
7571020 TGAAAAAA
1 TG-AAAAA
7571028 TG-AAAA
1 TGAAAAA
7571034 TGAAAAAA
1 TG-AAAAA
7571042 TG-AAAA
1 TGAAAAA
7571048 TGAAAAA
1 TGAAAAA
7571055 TG-AAAA
1 TGAAAAA
7571061 TGAAAAA
1 TGAAAAA
7571068 -GTAAAAA
1 TG-AAAAA
7571075 TG
1 TG
7571077 GAGAGGCTAA
Statistics
Matches: 69, Mismatches: 0, Indels: 19
0.78 0.00 0.22
Matches are distributed among these distances:
6 25 0.36
7 23 0.33
8 14 0.20
9 7 0.10
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
TGAAAAA
Found at i:7571006 original size:22 final size:21
Alignment explanation
Indices: 7570991--7571067 Score: 95
Period size: 22 Copynumber: 3.7 Consensus size: 21
7570981 AAAAAAAGGG
7570991 TGAAAAATGAAAAAAATGAAAA
1 TGAAAAATGAAAAAAA-GAAAA
*
7571013 TGAAAAATGAAAAAATGAAAA
1 TGAAAAATGAAAAAAAGAAAA
**
7571034 TGAAAAAATGAAAATGA-AAAA
1 TG-AAAAATGAAAAAAAGAAAA
7571055 TG-AAAATGAAAAA
1 TGAAAAATGAAAAA
7571068 GTAAAAATGG
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
19 10 0.20
21 13 0.27
22 26 0.53
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (21 bp):
TGAAAAATGAAAAAAAGAAAA
Found at i:7571026 original size:14 final size:13
Alignment explanation
Indices: 7571003--7571067 Score: 96
Period size: 13 Copynumber: 4.8 Consensus size: 13
7570993 AAAAATGAAA
7571003 AAAATG-AAAATG
1 AAAATGAAAAATG
7571015 AAAAATGAAAAAATG
1 -AAAATG-AAAAATG
7571030 AAAATGAAAAAATG
1 AAAATG-AAAAATG
7571044 AAAATGAAAAATG
1 AAAATGAAAAATG
7571057 AAAATGAAAAA
1 AAAATGAAAAA
7571068 GTAAAAATGG
Statistics
Matches: 50, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
13 24 0.48
14 20 0.40
15 6 0.12
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:7571033 original size:27 final size:26
Alignment explanation
Indices: 7571003--7571076 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 26
7570993 AAAAATGAAA
7571003 AAAATGAAAATGAAAAATGAAAAAATG
1 AAAATGAAAATGAAAAATG-AAAAATG
7571030 AAAATGAAAAAATG-AAAATGAAAAATG
1 AAAATG--AAAATGAAAAATGAAAAATG
*
7571057 AAAATGAAAAAGTAAAAATG
1 AAAATGAAAATG-AAAAATG
7571077 GAGAGGCTAA
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
25 5 0.12
27 25 0.60
28 6 0.14
29 6 0.14
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (26 bp):
AAAATGAAAATGAAAAATGAAAAATG
Found at i:7571073 original size:13 final size:14
Alignment explanation
Indices: 7571009--7571067 Score: 102
Period size: 14 Copynumber: 4.2 Consensus size: 14
7570999 GAAAAAAATG
7571009 AAAATGAAAAATGAA
1 AAAATG-AAAATGAA
7571024 AAAATGAAAATGAA
1 AAAATGAAAATGAA
7571038 AAAATGAAAATG-A
1 AAAATGAAAATGAA
7571051 AAAATGAAAATGAA
1 AAAATGAAAATGAA
7571065 AAA
1 AAA
7571068 GTAAAAATGG
Statistics
Matches: 43, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
13 13 0.30
14 24 0.56
15 6 0.14
ACGTcount: A:0.73, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AAAATGAAAATGAA
Found at i:7571074 original size:14 final size:14
Alignment explanation
Indices: 7571009--7571076 Score: 84
Period size: 14 Copynumber: 4.9 Consensus size: 14
7570999 GAAAAAAATG
7571009 AAAATGAAAAATGAA
1 AAAAT-AAAAATGAA
*
7571024 AAAATGAAAATGAA
1 AAAATAAAAATGAA
*
7571038 AAAATGAAAATG-A
1 AAAATAAAAATGAA
*
7571051 AAAATGAAAATGAA
1 AAAATAAAAATGAA
*
7571065 AAAGTAAAAATG
1 AAAATAAAAATG
7571077 GAGAGGCTAA
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
13 13 0.27
14 31 0.63
15 5 0.10
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (14 bp):
AAAATAAAAATGAA
Found at i:7571074 original size:21 final size:21
Alignment explanation
Indices: 7570991--7571076 Score: 92
Period size: 21 Copynumber: 4.1 Consensus size: 21
7570981 AAAAAAAGGG
7570991 TGAAAAATGAAAAAAATG-AAAA
1 TGAAAAATG--AAAAATGAAAAA
7571013 TGAAAAATGAAAAAATG-AAAA
1 TGAAAAATG-AAAAATGAAAAA
7571034 TGAAAAAATG-AAAATGAAAAA
1 TG-AAAAATGAAAAATGAAAAA
7571055 TG-AAAATGAAAAA-GTAAAAA
1 TGAAAAATGAAAAATG-AAAAA
7571075 TG
1 TG
7571077 GAGAGGCTAA
Statistics
Matches: 60, Mismatches: 0, Indels: 10
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.12
20 17 0.28
21 20 0.33
22 16 0.27
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (21 bp):
TGAAAAATGAAAAATGAAAAA
Found at i:7572504 original size:87 final size:87
Alignment explanation
Indices: 7572315--7573052 Score: 1073
Period size: 87 Copynumber: 8.5 Consensus size: 87
7572305 AGATCAGTGA
* *
7572315 AGATCGAAAACAAAACCTTGCCTCCATCGGTTACAGTGGAGCTGGTTAAAGA-AGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * *
7572379 CTTCCTGCATTAACAGCAAAGT
66 CTTCCTGCATTGACAGCGAAGC
* * * * *
7572401 AGATCAAAAACAAAGCCTTGCCTCTATCGGTCGCAGTGGACCTGGTTAAAGATAGCAGATTTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
7572466 CTTCTTGCATTAACAGCGAAGC
66 CTTCCTGCATTGACAGCGAAGC
* *
7572488 AGATCGAAAACCAAGCCTTCCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
7572553 CTTCCTGCATTGACAGCAAAGC
66 CTTCCTGCATTGACAGCGAAGC
* * * *
7572575 AGATCGAAAACAAAGCCTTGCCTCCATCGTTTGCAGTGGAGCTTGTTAAAGATAACAGATCTTTC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
7572640 CTTCCTGCATTGATAGCGAAGT
66 CTTCCTGCATTGACAGCGAAGC
* *
7572662 AGATCAAAAACCAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * * *
7572727 CTTCCTCCATTGAGAGTGAGGC
66 CTTCCTGCATTGACAGCGAAGC
7572749 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
7572814 CTTCCTGCATTGACAGCGAAGC
66 CTTCCTGCATTGACAGCGAAGC
* * * * *
7572836 ACATAGAAGACCCAAGCCTTACCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTG
1 AGATCGAA-AACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTG
7572901 CCTTCCTGCATTGACAGCGAAGC
65 CCTTCCTGCATTGACAGCGAAGC
* * * * *
7572924 ACATAGAAGACCCAAGCCTTACCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTG
1 AGATCGAA-AACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTG
*
7572989 CCTTCCTGCATTGACAGCGAAAC
65 CCTTCCTGCATTGACAGCGAAGC
* ** *
7573012 AGATCCAAAATGAAGCCTTGCCTCCATCGGTTGTAGTGGAG
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAG
7573053 TAGATTGAAT
Statistics
Matches: 590, Mismatches: 60, Indels: 3
0.90 0.09 0.00
Matches are distributed among these distances:
86 46 0.08
87 376 0.64
88 168 0.28
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (87 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCATTGACAGCGAAGC
Found at i:7589026 original size:20 final size:20
Alignment explanation
Indices: 7588924--7589085 Score: 55
Period size: 20 Copynumber: 8.1 Consensus size: 20
7588914 ACTTCGGTAT
*
7588924 CCCTGAATGCACATACGTGC
1 CCCTGAATGCACTTACGTGC
* * ** *
7588944 CCCT-ATTTGTACTTTTGTAC
1 CCCTGA-ATGCACTTACGTGC
*
7588964 CCCTG-ATCGCACTTACATGC
1 CCCTGAAT-GCACTTACGTGC
* ** * *
7588984 CCTTGTTTGTACTT-CAGTTC
1 CCCTGAATGCACTTAC-GTGC
7589004 CCCTGAATGCACTTACGTGC
1 CCCTGAATGCACTTACGTGC
* * ** *
7589024 CCCT-ATTTGTACTTTGGTAC
1 CCCTGA-ATGCACTTACGTGC
** *
7589044 CGTTGAATGCACTT-CGGTAC
1 CCCTGAATGCACTTAC-GTGC
*
7589064 CCCTGAATGCACTTTCGTGC
1 CCCTGAATGCACTTACGTGC
7589084 CC
1 CC
7589086 TTATTTATAC
Statistics
Matches: 97, Mismatches: 35, Indels: 20
0.64 0.23 0.13
Matches are distributed among these distances:
19 4 0.04
20 89 0.92
21 4 0.04
ACGTcount: A:0.17, C:0.31, G:0.17, T:0.34
Consensus pattern (20 bp):
CCCTGAATGCACTTACGTGC
Found at i:7589067 original size:40 final size:40
Alignment explanation
Indices: 7588891--7589057 Score: 201
Period size: 40 Copynumber: 4.2 Consensus size: 40
7588881 TATTGATGAT
* *
7588891 TGCACTTATGTGCCCCTATTTGTACTTCGGTATCCCTGAA
1 TGCACTTACGTGCCCCTATTTGTACTTCGGTACCCCTGAA
* **
7588931 TGCACATACGTGCCCCTATTTGTACTTTTGTACCCCTG-A
1 TGCACTTACGTGCCCCTATTTGTACTTCGGTACCCCTGAA
* * * * *
7588970 TCGCACTTACATGCCCTTGTTTGTACTTCAGTTCCCCTGAA
1 T-GCACTTACGTGCCCCTATTTGTACTTCGGTACCCCTGAA
* **
7589011 TGCACTTACGTGCCCCTATTTGTACTTTGGTACCGTTGAA
1 TGCACTTACGTGCCCCTATTTGTACTTCGGTACCCCTGAA
7589051 TGCACTT
1 TGCACTT
7589058 CGGTACCCCT
Statistics
Matches: 105, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 2 0.02
40 101 0.96
41 2 0.02
ACGTcount: A:0.17, C:0.29, G:0.17, T:0.37
Consensus pattern (40 bp):
TGCACTTACGTGCCCCTATTTGTACTTCGGTACCCCTGAA
Found at i:7604811 original size:23 final size:23
Alignment explanation
Indices: 7604784--7604827 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
7604774 GTAGCACTAT
7604784 TTCCGACACTGCTCAATTTCTGA
1 TTCCGACACTGCTCAATTTCTGA
*
7604807 TTCCGGCACTGCTCAATTTCT
1 TTCCGACACTGCTCAATTTCT
7604828 AATTGCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.18, C:0.32, G:0.14, T:0.36
Consensus pattern (23 bp):
TTCCGACACTGCTCAATTTCTGA
Found at i:7606017 original size:23 final size:23
Alignment explanation
Indices: 7605977--7606024 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
7605967 ATATATATTT
*
7605977 ATATATTTTTATAATTAAATTAA
1 ATATATTTTTATAATTAAATCAA
*
7606000 ATATA-TTTTATTATTTAAATCAA
1 ATATATTTTTA-TAATTAAATCAA
7606023 AT
1 AT
7606025 TTAGACCGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
ATATATTTTTATAATTAAATCAA
Found at i:7606282 original size:37 final size:36
Alignment explanation
Indices: 7606217--7606288 Score: 99
Period size: 37 Copynumber: 2.0 Consensus size: 36
7606207 TTGGTTTTCA
* *
7606217 AACAAGACATTGATAGAATATATAAAAATATAATAG
1 AACAAGACATAGATAGAATATAGAAAAATATAATAG
* *
7606253 AACAAGACAATAGATAGAATATAGGAAAATGTAATA
1 AACAAGAC-ATAGATAGAATATAGAAAAATATAATA
7606289 AAACCTCAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 8 0.26
37 23 0.74
ACGTcount: A:0.58, C:0.06, G:0.14, T:0.22
Consensus pattern (36 bp):
AACAAGACATAGATAGAATATAGAAAAATATAATAG
Found at i:7608593 original size:8 final size:8
Alignment explanation
Indices: 7608580--7608604 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7608570 ACGGATGTCG
7608580 AAAGCACA
1 AAAGCACA
7608588 AAAGCACA
1 AAAGCACA
7608596 AAAGCACA
1 AAAGCACA
7608604 A
1 A
7608605 GCAATCTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.24, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAGCACA
Found at i:7611425 original size:35 final size:35
Alignment explanation
Indices: 7611379--7611451 Score: 92
Period size: 35 Copynumber: 2.1 Consensus size: 35
7611369 ATTATCTATT
* * * *
7611379 GGTCCTTCGAGGTGACATTGTGTAATCAATATATA
1 GGTCATTCGAGGCGACACTATGTAATCAATATATA
* *
7611414 GGTCATTCGAGGCGATACTATGTAATCGATATATA
1 GGTCATTCGAGGCGACACTATGTAATCAATATATA
7611449 GGT
1 GGT
7611452 TCTACGAAGC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.33
Consensus pattern (35 bp):
GGTCATTCGAGGCGACACTATGTAATCAATATATA
Found at i:7617241 original size:50 final size:50
Alignment explanation
Indices: 7617125--7617367 Score: 378
Period size: 50 Copynumber: 4.8 Consensus size: 50
7617115 GATAAGGACA
* ** *
7617125 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTACTCATGTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCT-CTCATCTCGG
* **
7617176 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
7617226 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
7617276 TGCCAACGCCATGTCCCAGACATGGACTTACATGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
7617326 TGCCAATGCCATGTCCCAGACATGGTCTTATATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7617368 TTACCCAAAT
Statistics
Matches: 176, Mismatches: 16, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
50 142 0.81
51 34 0.19
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:7617740 original size:30 final size:30
Alignment explanation
Indices: 7617705--7617762 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7617695 CCTCGACTCT
*
7617705 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
7617735 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
7617763 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:7622456 original size:16 final size:18
Alignment explanation
Indices: 7622429--7622461 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7622419 ATAAATTAAT
7622429 TTAAATTAA-TTTCTCAA
1 TTAAATTAATTTTCTCAA
7622446 TTAAA-TAATTTTCTCA
1 TTAAATTAATTTTCTCA
7622462 GCCTGATTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (18 bp):
TTAAATTAATTTTCTCAA
Found at i:7627019 original size:17 final size:17
Alignment explanation
Indices: 7626993--7627025 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7626983 TCTCAGATTT
7626993 TGATAACCATATCTTTC
1 TGATAACCATATCTTTC
*
7627010 TGATACCCATATCTTT
1 TGATAACCATATCTTT
7627026 GACTTTCTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.24, G:0.06, T:0.42
Consensus pattern (17 bp):
TGATAACCATATCTTTC
Found at i:7631622 original size:11 final size:11
Alignment explanation
Indices: 7631608--7631645 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
7631598 TTTATCTTTT
*
7631608 CTTTTTTGTGA
1 CTTTTATGTGA
7631619 CTTTTATGTGA
1 CTTTTATGTGA
7631630 CTTTTATGTGA
1 CTTTTATGTGA
7631641 CTTTT
1 CTTTT
7631646 TCGTTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.13, C:0.11, G:0.16, T:0.61
Consensus pattern (11 bp):
CTTTTATGTGA
Found at i:7637062 original size:16 final size:16
Alignment explanation
Indices: 7637032--7637064 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7637022 AATTTTTATT
*
7637032 TTTATTTTATTTTTGG
1 TTTATTTAATTTTTGG
7637048 TTTATTTAATTTTTGG
1 TTTATTTAATTTTTGG
7637064 T
1 T
7637065 ACATGACTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.00, G:0.12, T:0.73
Consensus pattern (16 bp):
TTTATTTAATTTTTGG
Found at i:7640206 original size:85 final size:85
Alignment explanation
Indices: 7640037--7640315 Score: 344
Period size: 86 Copynumber: 3.2 Consensus size: 85
7640027 ACAGATGAAT
* * * *
7640037 AGTGGCAATTTAATCTGCAAACAGTATGGTTCAATCATGAACCGAGTGACAATTTGTTTAATCTG
1 AGTGGCAA--TAA-CTGCAAATAGTGTGGTTCAATCACGAACCAAGTGAC-ATTTGTTTAATCTG
*
7640102 GAAATATGTTGTGCACTCACAACA
62 CAAATATGTTGTGCACTCACAACA
* * * *
7640126 AGTGGCAATAACTGTAAATA-TGTGGTTCAATCACGAACCAAGTGGCAGTTTGTTTAATTTGCTA
1 AGTGGCAATAACTGCAAATAGTGTGGTTCAATCACGAACCAAGTGACA-TTTGTTTAATCTGCAA
7640190 ATATGTTGTGCACTCACAACA
65 ATATGTTGTGCACTCACAACA
* * * * *
7640211 AGTGGCAGTAACTACAAATAGTTTGGTTCAATCACGAACGAAGTGACTATTTTTTTAATCTGCAA
1 AGTGGCAATAACTGCAAATAGTGTGGTTCAATCACGAACCAAGTGAC-ATTTGTTTAATCTGCAA
* *
7640276 ATATGTTGTGTACCCACAACA
65 ATATGTTGTGCACTCACAACA
*
7640297 AGTGGCAATAACTGGAAAT
1 AGTGGCAATAACTGCAAAT
7640316 GAACGATGGT
Statistics
Matches: 164, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
84 1 0.01
85 73 0.45
86 78 0.48
87 4 0.02
89 8 0.05
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.30
Consensus pattern (85 bp):
AGTGGCAATAACTGCAAATAGTGTGGTTCAATCACGAACCAAGTGACATTTGTTTAATCTGCAAA
TATGTTGTGCACTCACAACA
Found at i:7640294 original size:86 final size:85
Alignment explanation
Indices: 7640054--7640309 Score: 327
Period size: 85 Copynumber: 3.0 Consensus size: 85
7640044 ATTTAATCTG
* * *
7640054 CAAACAGTATGGTTCAATCATGAACCG-AGTGACAATTTGTTTAATCTGGAAATATGTTGTGCAC
1 CAAATAGTATGGTTCAATCACGAA-CGAAGTGAC-ATTTGTTTAATCTGCAAATATGTTGTGCAC
*
7640118 TCACAACAAGTGGCAATAACTG
64 TCACAACAAGTGGCAATAACTA
* * * * * *
7640140 TAAATA-TGTGGTTCAATCACGAACCAAGTGGCAGTTTGTTTAATTTGCTAATATGTTGTGCACT
1 CAAATAGTATGGTTCAATCACGAACGAAGTGACA-TTTGTTTAATCTGCAAATATGTTGTGCACT
*
7640204 CACAACAAGTGGCAGTAACTA
65 CACAACAAGTGGCAATAACTA
* * * *
7640225 CAAATAGTTTGGTTCAATCACGAACGAAGTGACTATTTTTTTAATCTGCAAATATGTTGTGTACC
1 CAAATAGTATGGTTCAATCACGAACGAAGTGAC-ATTTGTTTAATCTGCAAATATGTTGTGCACT
7640290 CACAACAAGTGGCAATAACT
65 CACAACAAGTGGCAATAACT
7640310 GGAAATGAAC
Statistics
Matches: 145, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
84 2 0.01
85 71 0.49
86 71 0.49
87 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (85 bp):
CAAATAGTATGGTTCAATCACGAACGAAGTGACATTTGTTTAATCTGCAAATATGTTGTGCACTC
ACAACAAGTGGCAATAACTA
Found at i:7642503 original size:44 final size:43
Alignment explanation
Indices: 7642421--7642547 Score: 127
Period size: 44 Copynumber: 2.9 Consensus size: 43
7642411 AGGATTCCGT
*
7642421 TATGTG-TTATCATGTAAGACCACGTCTGGGACGTTGGCATCGAC
1 TATGTGATTA-CATGTAAGACCACGTCTAGGACGTTGGCATCG-C
* *
7642465 T-TGTGACTTACGTGTAAGACC-CTGTCTAGGACAG-TGGCATCGT
1 TATGTGA-TTACATGTAAGACCAC-GTCTAGGAC-GTTGGCATCGC
* * *
7642508 TATGTGATTACATGTAAGACCACGTTTGGGACATTGGCAT
1 TATGTGATTACATGTAAGACCACGTCTAGGACGTTGGCAT
7642548 TGTACAAAAT
Statistics
Matches: 69, Mismatches: 7, Indels: 15
0.76 0.08 0.16
Matches are distributed among these distances:
43 32 0.46
44 33 0.48
45 4 0.06
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.31
Consensus pattern (43 bp):
TATGTGATTACATGTAAGACCACGTCTAGGACGTTGGCATCGC
Found at i:7642540 original size:43 final size:43
Alignment explanation
Indices: 7642418--7642547 Score: 142
Period size: 43 Copynumber: 3.0 Consensus size: 43
7642408 CATAGGATTC
7642418 CGTTATGTG-TTATCATGTAAGACCACGTCTGGGAC-GTTGGCAT
1 CGTTATGTGATTA-CATGTAAGACCACGTCTGGGACAG-TGGCAT
* * *
7642461 CGACT-TGTGACTTACGTGTAAGACC-CTGTCTAGGACAGTGGCAT
1 CG-TTATGTGA-TTACATGTAAGACCAC-GTCTGGGACAGTGGCAT
* *
7642505 CGTTATGTGATTACATGTAAGACCACGTTTGGGACATTGGCAT
1 CGTTATGTGATTACATGTAAGACCACGTCTGGGACAGTGGCAT
7642548 TGTACAAAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 14
0.77 0.09 0.15
Matches are distributed among these distances:
43 35 0.49
44 33 0.46
45 4 0.06
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (43 bp):
CGTTATGTGATTACATGTAAGACCACGTCTGGGACAGTGGCAT
Found at i:7646445 original size:12 final size:11
Alignment explanation
Indices: 7646418--7646455 Score: 53
Period size: 10 Copynumber: 3.5 Consensus size: 11
7646408 GAAAATAGTC
7646418 AAAATTAATA-
1 AAAATTAATAT
7646428 AAAATTAACTAT
1 AAAATTAA-TAT
7646440 AAAATTAAT-T
1 AAAATTAATAT
7646450 AAAATT
1 AAAATT
7646456 CATCATGTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 15 0.58
11 3 0.12
12 8 0.31
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (11 bp):
AAAATTAATAT
Found at i:7651115 original size:12 final size:11
Alignment explanation
Indices: 7651088--7651125 Score: 53
Period size: 10 Copynumber: 3.5 Consensus size: 11
7651078 GAAAATAGTC
7651088 AAAATTAATA-
1 AAAATTAATAT
7651098 AAAATTAACTAT
1 AAAATTAA-TAT
7651110 AAAATTAAT-T
1 AAAATTAATAT
7651120 AAAATT
1 AAAATT
7651126 CATCATGTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 15 0.58
11 3 0.12
12 8 0.31
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (11 bp):
AAAATTAATAT
Found at i:7656494 original size:10 final size:10
Alignment explanation
Indices: 7656479--7656504 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
7656469 CCTAATTATC
7656479 GAGTATGTTT
1 GAGTATGTTT
7656489 GAGTATGTTT
1 GAGTATGTTT
7656499 GAGTAT
1 GAGTAT
7656505 TGAAGTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (10 bp):
GAGTATGTTT
Found at i:7659490 original size:33 final size:34
Alignment explanation
Indices: 7659448--7659563 Score: 107
Period size: 33 Copynumber: 3.4 Consensus size: 34
7659438 TCAGCTAGAT
7659448 ATTTATCCAACTCAGATGTTTTATCCTCACCACC
1 ATTTATCCAACTCAGATGTTTTATCCTCACCACC
* * * * *
7659482 ATTT-TCCAACTCACGCT-TTTTAT-ATAAAGCTTGA-T
1 ATTTATCCAACTCA-GATGTTTTATCCT-CA-C--CACC
7659517 ATTTATCCAACTCAGATGTTTTATCCTCACCACC
1 ATTTATCCAACTCAGATGTTTTATCCTCACCACC
7659551 ATTT-TCCAACTCA
1 ATTTATCCAACTCA
7659564 CACTTTTTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 19
0.68 0.11 0.21
Matches are distributed among these distances:
32 1 0.02
33 26 0.41
34 11 0.17
35 7 0.11
36 17 0.27
37 1 0.02
ACGTcount: A:0.28, C:0.28, G:0.06, T:0.38
Consensus pattern (34 bp):
ATTTATCCAACTCAGATGTTTTATCCTCACCACC
Found at i:7659556 original size:69 final size:69
Alignment explanation
Indices: 7659440--7659583 Score: 261
Period size: 69 Copynumber: 2.1 Consensus size: 69
7659430 CATTAGCCTC
* *
7659440 AGCTAGATATTTATCCAACTCAGATGTTTTATCCTCACCACCATTTTCCAACTCACGCTTTTTAT
1 AGCTTGATATTTATCCAACTCAGATGTTTTATCCTCACCACCATTTTCCAACTCACACTTTTTAT
*
7659505 ATAA
66 ACAA
7659509 AGCTTGATATTTATCCAACTCAGATGTTTTATCCTCACCACCATTTTCCAACTCACACTTTTTAT
1 AGCTTGATATTTATCCAACTCAGATGTTTTATCCTCACCACCATTTTCCAACTCACACTTTTTAT
7659574 ACAA
66 ACAA
7659578 AGCTTG
1 AGCTTG
7659584 CATTCACCTT
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 72 1.00
ACGTcount: A:0.28, C:0.26, G:0.08, T:0.38
Consensus pattern (69 bp):
AGCTTGATATTTATCCAACTCAGATGTTTTATCCTCACCACCATTTTCCAACTCACACTTTTTAT
ACAA
Found at i:7659814 original size:13 final size:13
Alignment explanation
Indices: 7659796--7659820 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7659786 CTAGGATCTA
7659796 AAACATAAGCAAC
1 AAACATAAGCAAC
7659809 AAACATAAGCAA
1 AAACATAAGCAA
7659821 ATTCATCTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.20, G:0.08, T:0.08
Consensus pattern (13 bp):
AAACATAAGCAAC
Found at i:7662165 original size:30 final size:31
Alignment explanation
Indices: 7662131--7662195 Score: 98
Period size: 30 Copynumber: 2.1 Consensus size: 31
7662121 CTTTAAGAGA
*
7662131 TTAAAAATCACTC-CTCTT-GAGTTTTTAAAT
1 TTAAAAATCACTCACTCTTAAAGTTTTT-AAT
7662161 TTAAAAATCACTCACTCTTAAAGTTTTTAAT
1 TTAAAAATCACTCACTCTTAAAGTTTTTAAT
7662192 TTAA
1 TTAA
7662196 GATTTTTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
30 13 0.41
31 12 0.38
32 7 0.22
ACGTcount: A:0.37, C:0.15, G:0.05, T:0.43
Consensus pattern (31 bp):
TTAAAAATCACTCACTCTTAAAGTTTTTAAT
Found at i:7663399 original size:20 final size:20
Alignment explanation
Indices: 7663355--7663393 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7663345 TGTGTTACTG
7663355 TTTTAGTTTTAGACTTTTAC
1 TTTTAGTTTTAGACTTTTAC
*
7663375 TTTTAGTTTTAGATTTTTA
1 TTTTAGTTTTAGACTTTTA
7663394 TGTTTATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.05, G:0.10, T:0.64
Consensus pattern (20 bp):
TTTTAGTTTTAGACTTTTAC
Found at i:7663445 original size:5 final size:5
Alignment explanation
Indices: 7663428--7663458 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
7663418 ACTTTTATGA
*
7663428 TTGGG TTGAG TTGGG TTGGG TTGGG TTGGG T
1 TTGGG TTGGG TTGGG TTGGG TTGGG TTGGG T
7663459 ACTTGGGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.03, C:0.00, G:0.55, T:0.42
Consensus pattern (5 bp):
TTGGG
Found at i:7664796 original size:17 final size:17
Alignment explanation
Indices: 7664774--7664810 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
7664764 GCACGAGCAC
7664774 TCATGTTTGACGTACTA
1 TCATGTTTGACGTACTA
*
7664791 TCATGTTTGATGTACTA
1 TCATGTTTGACGTACTA
7664808 TCA
1 TCA
7664811 CTCCAGTCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.43
Consensus pattern (17 bp):
TCATGTTTGACGTACTA
Found at i:7669763 original size:20 final size:21
Alignment explanation
Indices: 7669738--7669777 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
7669728 ATGTCCAAGT
7669738 TCAAGTGAAAA-TGAA-ATAGA
1 TCAAGT-AAAACTGAAGATAGA
7669758 TCAAGTAAAACTGAAGATAG
1 TCAAGTAAAACTGAAGATAG
7669778 GCTTAGTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 10 0.56
21 4 0.22
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (21 bp):
TCAAGTAAAACTGAAGATAGA
Found at i:7670887 original size:21 final size:22
Alignment explanation
Indices: 7670863--7670905 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7670853 TTACATGTAA
* *
7670863 TTATTTAG-TAAATTATATTGT
1 TTATGTAGTTAAATAATATTGT
7670884 TTATGTAGTTAAATAATATTGT
1 TTATGTAGTTAAATAATATTGT
7670906 ACTTCGTCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (22 bp):
TTATGTAGTTAAATAATATTGT
Found at i:7674148 original size:37 final size:37
Alignment explanation
Indices: 7674093--7674179 Score: 151
Period size: 37 Copynumber: 2.4 Consensus size: 37
7674083 TCCAAGTGTG
*
7674093 TTTATCT-T-TTTTAATCTAGGTGGAAGTAATTTAAA
1 TTTATCTATGTTTAAATCTAGGTGGAAGTAATTTAAA
7674128 TTTATCTATGTTTAAATCTAGGTGGAAGTAATTTAAA
1 TTTATCTATGTTTAAATCTAGGTGGAAGTAATTTAAA
7674165 TTTATCTATGTTTAA
1 TTTATCTATGTTTAA
7674180 CTTATTAAAC
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
35 7 0.14
36 1 0.02
37 41 0.84
ACGTcount: A:0.32, C:0.06, G:0.14, T:0.48
Consensus pattern (37 bp):
TTTATCTATGTTTAAATCTAGGTGGAAGTAATTTAAA
Found at i:7675520 original size:49 final size:49
Alignment explanation
Indices: 7675458--7675553 Score: 138
Period size: 49 Copynumber: 2.0 Consensus size: 49
7675448 TGCTAATATG
* * *
7675458 TTGTGGATGAACCACTGCTCGTTGCAGATAAACTGTCGACTAAAATACA
1 TTGTGGATAAACCACTGCTCATTGCAGATAAACTGCCGACTAAAATACA
* * *
7675507 TTGTGGTTAAACCACTGGTCATTGCAGATAAACTGCCGACTGAAATA
1 TTGTGGATAAACCACTGCTCATTGCAGATAAACTGCCGACTAAAATA
7675554 TTTATGGATG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (49 bp):
TTGTGGATAAACCACTGCTCATTGCAGATAAACTGCCGACTAAAATACA
Found at i:7675674 original size:33 final size:33
Alignment explanation
Indices: 7675635--7675726 Score: 139
Period size: 33 Copynumber: 2.8 Consensus size: 33
7675625 GCAATACAAC
7675635 ATAACATGCTTATAATAAATCAATACAGTAGTA
1 ATAACATGCTTATAATAAATCAATACAGTAGTA
* *
7675668 ATAACATGCTTATAATAAGTCGATACAGTAGTA
1 ATAACATGCTTATAATAAATCAATACAGTAGTA
* *
7675701 ATTATCATGCTTATAATAGATCAATA
1 A-TAACATGCTTATAATAAATCAATA
7675727 TGGTAGCAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 32 0.62
34 20 0.38
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.33
Consensus pattern (33 bp):
ATAACATGCTTATAATAAATCAATACAGTAGTA
Found at i:7679616 original size:33 final size:32
Alignment explanation
Indices: 7679579--7679756 Score: 124
Period size: 33 Copynumber: 5.3 Consensus size: 32
7679569 ATGCAACATG
* *
7679579 ACATGCTTATAACATATCAATACGGTAGTAATA
1 ACATGCTTATAACA-ATCAATACAGTAGCAATA
* * *
7679612 ACATGCTTATAATAAGTCAATATAGTAGGAATTA
1 ACATGCTTATAACAA-TCAATACAGTAGCAA-TA
* * * * *
7679646 TCATGCCTATAATAGATCAATA-GGGAGCAATAA
1 ACATGCTTATAACA-ATCAATACAGTAGCAAT-A
* *
7679679 ACATGCTTATAACAAGTCGATAAAGTAGCAATTA
1 ACATGCTTATAACAA-TCAATACAGTAGCAA-TA
* *
7679713 ACATGCATTATAACATATCATTACAGTAGTAATAA
1 ACATGC-TTATAACA-ATCAATACAGTAGCAAT-A
*
7679748 ACTTGCTTA
1 ACATGCTTA
7679757 ACATGCATTT
Statistics
Matches: 115, Mismatches: 20, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
32 3 0.03
33 47 0.41
34 37 0.32
35 27 0.23
36 1 0.01
ACGTcount: A:0.43, C:0.14, G:0.13, T:0.30
Consensus pattern (32 bp):
ACATGCTTATAACAATCAATACAGTAGCAATA
Found at i:7679759 original size:67 final size:68
Alignment explanation
Indices: 7679579--7679756 Score: 216
Period size: 67 Copynumber: 2.6 Consensus size: 68
7679569 ATGCAACATG
* * *
7679579 ACATGCTTATAACATATCAATACGGTAGTAAT-AACATGCTTATAATAAGTCAATATAGTAGGAA
1 ACATGCTTATAACATATCAATACGGTAGTAATAAACATGCTTATAACAAGTCAATAAAGTAGCAA
7679643 TTA
66 TTA
* * * * * * *
7679646 TCATGCCTATAATAGATCAATA-GGGAGCAATAAACATGCTTATAACAAGTCGATAAAGTAGCAA
1 ACATGCTTATAACATATCAATACGGTAGTAATAAACATGCTTATAACAAGTCAATAAAGTAGCAA
7679710 TTA
66 TTA
* * *
7679713 ACATGCATTATAACATATCATTACAGTAGTAATAAACTTGCTTA
1 ACATGC-TTATAACATATCAATACGGTAGTAATAAACATGCTTA
7679757 ACATGCATTT
Statistics
Matches: 89, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
66 7 0.08
67 54 0.61
68 12 0.13
69 16 0.18
ACGTcount: A:0.43, C:0.14, G:0.13, T:0.30
Consensus pattern (68 bp):
ACATGCTTATAACATATCAATACGGTAGTAATAAACATGCTTATAACAAGTCAATAAAGTAGCAA
TTA
Found at i:7686412 original size:2 final size:2
Alignment explanation
Indices: 7686405--7686440 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7686395 TTTCCTAAAT
7686405 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
7686441 TACATACATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:7686445 original size:4 final size:4
Alignment explanation
Indices: 7686438--7686474 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
7686428 ACACACACAC
7686438 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
7686475 TTTGTAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:7691723 original size:98 final size:98
Alignment explanation
Indices: 7691549--7691745 Score: 358
Period size: 98 Copynumber: 2.0 Consensus size: 98
7691539 GTACAATAAA
*
7691549 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
7691614 CCTCTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
*
7691647 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
7691712 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
7691745 A
1 A
7691746 TTATTTTTNN
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:7697149 original size:217 final size:217
Alignment explanation
Indices: 7696774--7697366 Score: 1010
Period size: 217 Copynumber: 2.7 Consensus size: 217
7696764 NNNNNNNNNN
7696774 AGGAGGATAAGACTTGCTTACTTAGTCTTGTCCACCGCAACTTCAGGGAGATAAGACTAGATGCG
1 AGGAGGATAAGACTTGCTTACTTAGTCTTGTCCACCGCAACTTCAGGGAGATAAGACTAGATGCG
*
7696839 ATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAACTTTAG
66 ATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAACTTCAG
*
7696904 GGAGATAGGATTGTCGGTTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTT
131 GGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTT
7696969 CAGTCTGCCTCACTATAACTTC
196 CAGTCTGCCTCACTATAACTTC
7696991 AGGAGGATAAGACTTGCTTACTTAGTCTTGTCCACCGCAACTTCAGGGAGATAAGACTAGATGCG
1 AGGAGGATAAGACTTGCTTACTTAGTCTTGTCCACCGCAACTTCAGGGAGATAAGACTAGATGCG
* * * *
7697056 ATCTGCACTCTGTAACTTCAGAGAGATAAGATCTGTAATTTTATTTCGCTCCACTACAACTTCAG
66 ATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAACTTCAG
7697121 GGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTT
131 GGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTT
** *
7697186 CAGTCTGCCTTGCTGTAACTTC
196 CAGTCTGCCTCACTATAACTTC
* *
7697208 AGGAGGATAAGACTTGCTTATTTAGTC-TGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGC
1 AGGAGGATAAGACTTGCTTACTTAGTCTTG-TCCACCGCAACTTCAGGGAGATAAGACTAGATGC
* * * *
7697272 GATCTGCTCTCTGCAACTTCAAAGGGATAAGATCTG-AGATTTTAATCCACTCCACTGCAACTTC
65 GATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTA-ATTTTAATCCGCTCCACTGCAACTTC
*
7697336 AGGGAGATAGGATTGTCGACTTTAATCTGCT
129 AGGGAGATAGGATTGTCGGCTTTAATCTGCT
7697367 TCCCACTATC
Statistics
Matches: 354, Mismatches: 20, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
216 3 0.01
217 351 0.99
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (217 bp):
AGGAGGATAAGACTTGCTTACTTAGTCTTGTCCACCGCAACTTCAGGGAGATAAGACTAGATGCG
ATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAACTTCAG
GGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTT
CAGTCTGCCTCACTATAACTTC
Found at i:7697250 original size:44 final size:45
Alignment explanation
Indices: 7696774--7697265 Score: 219
Period size: 44 Copynumber: 11.3 Consensus size: 45
7696764 NNNNNNNNNN
* *
7696774 AGGAG-GATAAGACTTGCTTACTTAGTCTTG-TCCACCGCAACTTC
1 AGGAGAGATAAGACTTGCTTATTTAGTC-TGCTCCACTGCAACTTC
* ** * *
7696818 AGG-GAGATAAGACTAG---A-TGCGATCTGCT-CTCTGTAACTTC
1 AGGAGAGATAAGACTTGCTTATTTAG-TCTGCTCCACTGCAACTTC
* * * *
7696858 A-GAGAGATAAGA-TCTG-TAATTTTAATCCGCTCCACTGCAACTTT
1 AGGAGAGATAAGACT-TGCTTA-TTTAGTCTGCTCCACTGCAACTTC
* * *
7696902 AGG-GAGATAGGA-TTGTCGGT-TTTAATCTGCTCCACTGCAACTTC
1 AGGAGAGATAAGACTTG-C-TTATTTAGTCTGCTCCACTGCAACTTC
* * **
7696946 AGGA-AGATAAGATTTGC-CATCTTCAGTCTGC-CTCACTATAACTTC
1 AGGAGAGATAAGACTTGCTTAT-TT-AGTCTGCTC-CACTGCAACTTC
* *
7696991 AGGAG-GATAAGACTTGCTTACTTAGTCTTG-TCCACCGCAACTTC
1 AGGAGAGATAAGACTTGCTTATTTAGTC-TGCTCCACTGCAACTTC
* ** * * *
7697035 AGG-GAGATAAGACTAG---A-TGCGATCTGC-ACTCTGTAACTTC
1 AGGAGAGATAAGACTTGCTTATTTAG-TCTGCTCCACTGCAACTTC
* * *
7697075 A-GAGAGATAAGA-TCTG-TAATTTTA-TTTCGCTCCACTACAACTTC
1 AGGAGAGATAAGACT-TGCTTA-TTTAGTCT-GCTCCACTGCAACTTC
* *** *
7697119 AGG-GAGATAGGA-TTGTCGGCTTTAATCTGCTCCACTGCAACTTC
1 AGGAGAGATAAGACTTG-CTTATTTAGTCTGCTCCACTGCAACTTC
* * ** *
7697163 AGGA-AGATAAGATTTGC-CATCTTCAGTCTGC-CTTGCTGTAACTTC
1 AGGAGAGATAAGACTTGCTTAT-TT-AGTCTGCTC-CACTGCAACTTC
7697208 AGGAG-GATAAGACTTGCTTATTTAGTCTGCTCCACTGCAACTTC
1 AGGAGAGATAAGACTTGCTTATTTAGTCTGCTCCACTGCAACTTC
7697252 AGG-GAGATAAGACT
1 AGGAGAGATAAGACT
7697266 AGATGCGATC
Statistics
Matches: 337, Mismatches: 63, Indels: 96
0.68 0.13 0.19
Matches are distributed among these distances:
39 4 0.01
40 48 0.14
41 7 0.02
42 4 0.01
43 16 0.05
44 176 0.52
45 79 0.23
46 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (45 bp):
AGGAGAGATAAGACTTGCTTATTTAGTCTGCTCCACTGCAACTTC
Found at i:7697520 original size:132 final size:132
Alignment explanation
Indices: 7697359--7698767 Score: 2737
Period size: 132 Copynumber: 10.7 Consensus size: 132
7697349 TGTCGACTTT
* * *
7697359 AATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
7697424 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
7697489 TA
131 TA
7697491 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
7697556 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
7697621 TA
131 TA
7697623 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
7697688 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
7697753 TA
131 TA
7697755 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
7697820 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
7697885 TA
131 TA
7697887 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
7697952 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
7698017 TA
131 TA
7698019 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
7698084 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
7698149 TA
131 TA
*
7698151 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
*
7698216 GGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
7698281 TA
131 TA
7698283 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
7698348 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
7698413 TA
131 TA
7698415 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
7698480 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
7698545 TA
131 TA
*
7698547 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
*
7698612 GGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
7698677 TA
131 TA
*
7698679 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGTTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
*
7698744 GGGAGATAAGATCTACAATTTTCA
66 GGGAGATAAGATCTACAATCTTCA
7698768 CTGATCTGTT
Statistics
Matches: 1265, Mismatches: 12, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
132 1265 1.00
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (132 bp):
AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
TA
Found at i:7699990 original size:5 final size:6
Alignment explanation
Indices: 7699968--7700012 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
7699958 TTGGCCTCTC
* *
7699968 CTTTTA CTTTTT CTTTTT CTTTTTT CCTTTTT CCTTTT CTTTTT C
1 CTTTTT CTTTTT CTTTTT C-TTTTT -CTTTTT CTTTTT CTTTTT C
7700013 CTCTTTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
6 23 0.68
7 10 0.29
8 1 0.03
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (6 bp):
CTTTTT
Found at i:7699997 original size:20 final size:19
Alignment explanation
Indices: 7699969--7700024 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 19
7699959 TGGCCTCTCC
*
7699969 TTTTACTTTTTCTTTTTCTT
1 TTTTCCTTTTTCTTTTTC-T
*
7699989 TTTTCCTTTTTCCTTTTCT
1 TTTTCCTTTTTCTTTTTCT
*
7700008 TTTTCCTCTTT-TTTTTC
1 TTTTCCTTTTTCTTTTTC
7700025 AAATATTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
18 5 0.16
19 11 0.34
20 16 0.50
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTCCTTTTTCTTTTTCT
Found at i:7700013 original size:12 final size:12
Alignment explanation
Indices: 7699976--7700024 Score: 55
Period size: 12 Copynumber: 3.9 Consensus size: 12
7699966 TCCTTTTACT
*
7699976 TTTTCTTTTTCTT
1 TTTTCTTTTTC-C
7699989 TTTTCCTTTTTCC
1 TTTT-CTTTTTCC
7700002 TTTTCTTTTTCC
1 TTTTCTTTTTCC
7700014 TCTTT-TTTTTC
1 T-TTTCTTTTTC
7700025 AAATATTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
12 15 0.45
13 11 0.33
14 7 0.21
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTCTTTTTCC
Found at i:7702714 original size:136 final size:137
Alignment explanation
Indices: 7702470--7702747 Score: 495
Period size: 136 Copynumber: 2.0 Consensus size: 137
7702460 TCTCTGCTCC
* * *
7702470 TAACTTGACTCTGAAAGTGGTGGAGCTGTTCATTATTACTACTTTCGTTTGCGTTCAAGTGCTTG
1 TAACTTGACTCTAAAAGTGGTAGAGCTATTCATTATTACTACTTTCGTTTGCGTTCAAGTGCTTG
7702535 ATCTGGATCTCACAATTTTGCAGCACCGTTTCTAGCTCTTCCAAGGAATGCACTTGCTGTCCCTC
66 ATCTGGATCTCACAATTTTGCAGCACCGTTTCTAGCTCTTCCAAGGAATGCACTTGCTGTCCCTC
7702600 TTTT-CT
131 TTTTGCT
* *
7702606 TAACTTGACTCTAAAAGTGGTAGAGTTATTCATTATTACTATTTTCGTTTGCGTTCAAGTGCTTG
1 TAACTTGACTCTAAAAGTGGTAGAGCTATTCATTATTACTACTTTCGTTTGCGTTCAAGTGCTTG
*
7702671 ATCTGGATCTCACAATTTTGCAGTACCGTTTCTAGCTCTTCCAAGGAATGCACTTGCTGTCCCTC
66 ATCTGGATCTCACAATTTTGCAGCACCGTTTCTAGCTCTTCCAAGGAATGCACTTGCTGTCCCTC
7702736 TTTTGCT
131 TTTTGCT
7702743 TAACT
1 TAACT
7702748 CGTGCAGCAA
Statistics
Matches: 135, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
136 128 0.95
137 7 0.05
ACGTcount: A:0.21, C:0.22, G:0.18, T:0.39
Consensus pattern (137 bp):
TAACTTGACTCTAAAAGTGGTAGAGCTATTCATTATTACTACTTTCGTTTGCGTTCAAGTGCTTG
ATCTGGATCTCACAATTTTGCAGCACCGTTTCTAGCTCTTCCAAGGAATGCACTTGCTGTCCCTC
TTTTGCT
Found at i:7705252 original size:19 final size:19
Alignment explanation
Indices: 7705228--7705340 Score: 145
Period size: 19 Copynumber: 5.8 Consensus size: 19
7705218 AATCATATAT
*
7705228 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
** *
7705247 TCTAAGATTATATATCATC
1 TCTAAGATTGCATATCATA
*
7705266 TGTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7705285 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
**
7705306 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7705325 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
7705341 CTCAAAAATT
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
19 62 0.78
21 17 0.22
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:7705315 original size:40 final size:40
Alignment explanation
Indices: 7705228--7705339 Score: 165
Period size: 40 Copynumber: 2.9 Consensus size: 40
7705218 AATCATATAT
* *
7705228 TCTAAGATTGCATATCACATCTAAGATT--ATATATCATC
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
*
7705266 TGTAAGATTGCATATCATATCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
**
7705306 TCTTGGATTGCATATCATATCTAAGATTGCATAT
1 TCTAAGATTGCATATCATATCTAAGATTGCATAT
7705340 CCTCAAAAAT
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
38 26 0.39
40 40 0.61
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (40 bp):
TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
Found at i:7717507 original size:20 final size:20
Alignment explanation
Indices: 7717466--7717507 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7717456 TAAAAATATA
*
7717466 TTTTTAAATTTTTAATGATT
1 TTTTTAAATTTTTAATAATT
*
7717486 TTTTTTAATTTTTAA-AATT
1 TTTTTAAATTTTTAATAATT
7717505 TTT
1 TTT
7717508 AAAAATTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTTTAAATTTTTAATAATT
Found at i:7737319 original size:20 final size:20
Alignment explanation
Indices: 7737279--7737319 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
7737269 ATGATGATAT
*
7737279 TAAAATGATAGATAAATAAA
1 TAAAATGATAAATAAATAAA
7737299 TAAAATGATAAAATAAA-AAA
1 TAAAATGAT-AAATAAATAAA
7737319 T
1 T
7737320 TTCTATGCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.24
Consensus pattern (20 bp):
TAAAATGATAAATAAATAAA
Found at i:7737673 original size:15 final size:17
Alignment explanation
Indices: 7737637--7737675 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
7737627 ATAAATAAAC
*
7737637 AAATAAATAAATGACTA
1 AAATAAATAAATGACGA
7737654 AAATAAA-AAATG-CGA
1 AAATAAATAAATGACGA
7737669 AAATAAA
1 AAATAAA
7737676 CAGGGACCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
16 5 0.24
17 7 0.33
ACGTcount: A:0.69, C:0.05, G:0.08, T:0.18
Consensus pattern (17 bp):
AAATAAATAAATGACGA
Found at i:7739221 original size:17 final size:17
Alignment explanation
Indices: 7739180--7739232 Score: 56
Period size: 17 Copynumber: 3.0 Consensus size: 17
7739170 ACTTCATTCC
7739180 ATTCTTATTTTTATAAACT
1 ATTCTTATTTTT-TAAA-T
7739199 -TT-TTATTTTTTAAAT
1 ATTCTTATTTTTTAAAT
7739214 ATTCTTATAATTTTTAAAT
1 ATTCTTAT--TTTTTAAAT
7739233 TATTTATTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.03
16 6 0.20
17 12 0.40
18 2 0.07
19 9 0.30
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (17 bp):
ATTCTTATTTTTTAAAT
Found at i:7741710 original size:23 final size:23
Alignment explanation
Indices: 7741684--7741746 Score: 81
Period size: 25 Copynumber: 2.7 Consensus size: 23
7741674 ATTATATATT
*
7741684 AAATATTTTTTTTATTTTTAATC
1 AAATATTTATTTTATTTTTAATC
7741707 AAATATATATATTTTATTTTTAATC
1 AAATAT-T-TATTTTATTTTTAATC
* *
7741732 AAATATATCTTTTAT
1 AAATATTTATTTTAT
7741747 ATATATTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
23 13 0.37
24 1 0.03
25 21 0.60
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (23 bp):
AAATATTTATTTTATTTTTAATC
Found at i:7747811 original size:28 final size:28
Alignment explanation
Indices: 7747771--7747834 Score: 128
Period size: 28 Copynumber: 2.3 Consensus size: 28
7747761 AGTTACATTT
7747771 GGAAATGAATGTGGTTTCTCACTTGGTA
1 GGAAATGAATGTGGTTTCTCACTTGGTA
7747799 GGAAATGAATGTGGTTTCTCACTTGGTA
1 GGAAATGAATGTGGTTTCTCACTTGGTA
7747827 GGAAATGA
1 GGAAATGA
7747835 CCTAAGAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.28, C:0.09, G:0.30, T:0.33
Consensus pattern (28 bp):
GGAAATGAATGTGGTTTCTCACTTGGTA
Found at i:7751749 original size:17 final size:17
Alignment explanation
Indices: 7751727--7751764 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
7751717 CAGGAGCTCC
*
7751727 TGTTAATAAAATCTGAT
1 TGTTAATAAAATCGGAT
7751744 TGTTAATAAAATCGGAT
1 TGTTAATAAAATCGGAT
7751761 TGTT
1 TGTT
7751765 TTTCGTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (17 bp):
TGTTAATAAAATCGGAT
Found at i:7752767 original size:97 final size:97
Alignment explanation
Indices: 7752601--7752794 Score: 316
Period size: 97 Copynumber: 2.0 Consensus size: 97
7752591 TGATGCACTC
* *
7752601 ACTCTTGATGAACTTCAAAGCTCCTTGTTGATCCATGAGCAGAAAATGAACAGAACTTCTACCTC
1 ACTCTTGATGAACTTCAAAGCTCCTTGTTGATCCATAAGCAGAAAATAAACAGAACTTCTACCTC
7752666 AATAGAACAGGCTTTGAAAGCTTCAACTCATT
66 AATAGAACAGGCTTTGAAAGCTTCAACTCATT
* * * *
7752698 ACTCTTGATGAACTTCAGAGCTCCTTGTTGGTCCATAAGCAGAAGATAAACAGAATTTCTACCTC
1 ACTCTTGATGAACTTCAAAGCTCCTTGTTGATCCATAAGCAGAAAATAAACAGAACTTCTACCTC
**
7752763 AATAGAGTAGGCTTTGAAAGCTTCAACTCATT
66 AATAGAACAGGCTTTGAAAGCTTCAACTCATT
7752795 CTTTCAGAGG
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
97 89 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (97 bp):
ACTCTTGATGAACTTCAAAGCTCCTTGTTGATCCATAAGCAGAAAATAAACAGAACTTCTACCTC
AATAGAACAGGCTTTGAAAGCTTCAACTCATT
Found at i:7756774 original size:41 final size:41
Alignment explanation
Indices: 7756600--7756749 Score: 239
Period size: 41 Copynumber: 3.7 Consensus size: 41
7756590 TTTAACATAT
*
7756600 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
* *
7756641 TCACCGGCACGTAGCCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
*
7756682 TCACCGGCACTTAGCCTGCTAGG-TTCATAACCTGGTTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTT-ATAACCTGATTCAGA
*
7756723 TCACCGGCACTTAGCCTGCTAGACTTA
1 TCACCGGCACTTAGCCTGCTAGGCTTA
7756750 AAGTCTGAAT
Statistics
Matches: 101, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
40 2 0.02
41 97 0.96
42 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
Found at i:7756786 original size:82 final size:83
Alignment explanation
Indices: 7756598--7756774 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 83
7756588 AATTTAACAT
*
7756598 ATTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACGTAGCCTGCTAG
1 ATTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGATCACCGGCACGTAGCCTGCTAG
**
7756663 GTTTATAACCTGATTCAG
66 ACTTATAACCTGATTCAG
* *
7756681 A-TCACCGGCACTTAGCCTGCTAGG-TTCATAACCTGGTTCAGATCACCGGCACTTAGCCTGCTA
1 ATTCACCGGCACTTAGCCTGCTAGGCTT-ATAACCTGATTCAGATCACCGGCACGTAGCCTGCTA
*
7756744 GACTTA-AAGTCTGAATT-A-
65 GACTTATAA-CCTG-ATTCAG
7756762 ATTCACCGGCACT
1 ATTCACCGGCACT
7756775 ACATCTGCTA
Statistics
Matches: 84, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
81 5 0.06
82 75 0.89
83 4 0.05
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (83 bp):
ATTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGATCACCGGCACGTAGCCTGCTAG
ACTTATAACCTGATTCAG
Found at i:7758310 original size:23 final size:23
Alignment explanation
Indices: 7758283--7758328 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 23
7758273 TAATTTGTTA
7758283 TATTAA-ACATATATTAACCTTAT
1 TATTAATAC-TATATTAACCTTAT
7758306 TATTAATTTACTATATTAACCTT
1 TATTAA--TACTATATTAACCTT
7758329 TACATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 6 0.30
25 12 0.60
26 2 0.10
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (23 bp):
TATTAATACTATATTAACCTTAT
Found at i:7759423 original size:17 final size:18
Alignment explanation
Indices: 7759383--7759424 Score: 70
Period size: 17 Copynumber: 2.4 Consensus size: 18
7759373 TTTAAAGGAG
7759383 GGATTGTTAATAAAATCT
1 GGATTGTTAATAAAATCT
7759401 GG-TTGTTAATAAAATC-
1 GGATTGTTAATAAAATCT
7759417 GGATTGTT
1 GGATTGTT
7759425 TTTCTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.09
17 19 0.83
18 2 0.09
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.40
Consensus pattern (18 bp):
GGATTGTTAATAAAATCT
Found at i:7760519 original size:21 final size:24
Alignment explanation
Indices: 7760495--7760543 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 24
7760485 AATTTATATT
*
7760495 TATTTTTAATATT-TTGTT-AG-A
1 TATTTTTAAAATTATTGTTAAGAA
7760516 TA-TTTTAAAATTATTGTTAAGAA
1 TATTTTTAAAATTATTGTTAAGAA
7760539 TATTT
1 TATTT
7760544 AAAAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 9 0.39
21 7 0.30
22 2 0.09
23 3 0.13
24 2 0.09
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (24 bp):
TATTTTTAAAATTATTGTTAAGAA
Found at i:7760547 original size:22 final size:20
Alignment explanation
Indices: 7760498--7760549 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 20
7760488 TTATATTTAT
*
7760498 TTTTAATATTTTGTTAGATA
1 TTTTAAAATTTTGTTAGATA
7760518 TTTTAAAATTATTGTTAAGAATA
1 TTTTAAAATT-TTGTT-AG-ATA
*
7760541 TTTAAAAAT
1 TTTTAAAAT
7760550 AAAATAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 9 0.33
21 5 0.19
22 2 0.07
23 11 0.41
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (20 bp):
TTTTAAAATTTTGTTAGATA
Found at i:7767792 original size:9 final size:9
Alignment explanation
Indices: 7767778--7767802 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7767768 TAGGGTTCCA
7767778 TTTCATGAT
1 TTTCATGAT
7767787 TTTCATGAT
1 TTTCATGAT
7767796 TTTCATG
1 TTTCATG
7767803 TAATTTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.12, G:0.12, T:0.56
Consensus pattern (9 bp):
TTTCATGAT
Found at i:7771879 original size:22 final size:22
Alignment explanation
Indices: 7771854--7771898 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7771844 TTTAATAAAA
7771854 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
7771876 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
7771898 A
1 A
7771899 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:7777623 original size:22 final size:22
Alignment explanation
Indices: 7777598--7777642 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7777588 TTTAATAAAA
7777598 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
7777620 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
7777642 A
1 A
7777643 CAGAAAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:7778833 original size:15 final size:15
Alignment explanation
Indices: 7778813--7778841 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7778803 GTGAAAGTTC
7778813 ATGTAAGAACAGAAT
1 ATGTAAGAACAGAAT
7778828 ATGTAAGAACAGAA
1 ATGTAAGAACAGAA
7778842 CCATGAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.07, G:0.21, T:0.17
Consensus pattern (15 bp):
ATGTAAGAACAGAAT
Found at i:7785502 original size:26 final size:26
Alignment explanation
Indices: 7785473--7785523 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
7785463 AAACATTTAG
7785473 CACCTCAAACTTTCGTTTAAAATCAA
1 CACCTCAAACTTTCGTTTAAAATCAA
7785499 CACCTCAAACTTTCGTTTAAAATCA
1 CACCTCAAACTTTCGTTTAAAATCA
7785524 GTCTTCTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.27, G:0.04, T:0.31
Consensus pattern (26 bp):
CACCTCAAACTTTCGTTTAAAATCAA
Found at i:7789234 original size:17 final size:16
Alignment explanation
Indices: 7789212--7789244 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
7789202 AAAGTCAAAG
7789212 ATATGGGTATCAGAAAT
1 ATATGGGTATCA-AAAT
7789229 ATATGGGTATCAAAAT
1 ATATGGGTATCAAAAT
7789245 CTGGGATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.30
Consensus pattern (16 bp):
ATATGGGTATCAAAAT
Found at i:7790773 original size:38 final size:38
Alignment explanation
Indices: 7790731--7790803 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
7790721 AAATAAAAAA
7790731 TTAAATTAATAAAAATAAAACATGACATTTAATATCAC
1 TTAAATTAATAAAAATAAAACATGACATTTAATATCAC
7790769 TTAAATTAATAAAAATAAAACATGACATTTAATAT
1 TTAAATTAATAAAAATAAAACATGACATTTAATAT
7790804 TACTCAACTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.33
Consensus pattern (38 bp):
TTAAATTAATAAAAATAAAACATGACATTTAATATCAC
Found at i:7794296 original size:41 final size:41
Alignment explanation
Indices: 7794239--7794326 Score: 176
Period size: 41 Copynumber: 2.1 Consensus size: 41
7794229 CCCAGTAAAT
7794239 TCCAAACTTTTATTATTACAGGGTAGCTATAGAAAACCTGG
1 TCCAAACTTTTATTATTACAGGGTAGCTATAGAAAACCTGG
7794280 TCCAAACTTTTATTATTACAGGGTAGCTATAGAAAACCTGG
1 TCCAAACTTTTATTATTACAGGGTAGCTATAGAAAACCTGG
7794321 TCCAAA
1 TCCAAA
7794327 GTTTCATCTG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (41 bp):
TCCAAACTTTTATTATTACAGGGTAGCTATAGAAAACCTGG
Found at i:7796363 original size:21 final size:21
Alignment explanation
Indices: 7796350--7796440 Score: 101
Period size: 21 Copynumber: 4.3 Consensus size: 21
7796340 ATAAGGGTTG
7796350 AACGGAAGCTCATAAGAGCTA
1 AACGGAAGCTCATAAGAGCTA
*
7796371 AACGAAAGCTCATAAGAGCTA
1 AACGGAAGCTCATAAGAGCTA
* * * * *
7796392 AACGAAAACCCATAAGGGTTA
1 AACGGAAGCTCATAAGAGCTA
* * *
7796413 AACAGAAGCTCAAAAGAGCTG
1 AACGGAAGCTCATAAGAGCTA
7796434 AACGGAA
1 AACGGAA
7796441 ACCCATTAGA
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (21 bp):
AACGGAAGCTCATAAGAGCTA
Found at i:7796406 original size:42 final size:42
Alignment explanation
Indices: 7796360--7796451 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
7796350 AACGGAAGCT
*
7796360 CATAAGAGCTAAAC-GAAAGCTCATAAGAGCTAAACGAAAACC
1 CATAAGAGCTAAACAG-AAGCTCAAAAGAGCTAAACGAAAACC
* * * *
7796402 CATAAGGGTTAAACAGAAGCTCAAAAGAGCTGAACGGAAACC
1 CATAAGAGCTAAACAGAAGCTCAAAAGAGCTAAACGAAAACC
*
7796444 CATTAGAG
1 CATAAGAG
7796452 TTGAACAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
42 41 0.98
43 1 0.02
ACGTcount: A:0.47, C:0.20, G:0.21, T:0.13
Consensus pattern (42 bp):
CATAAGAGCTAAACAGAAGCTCAAAAGAGCTAAACGAAAACC
Found at i:7806180 original size:7 final size:7
Alignment explanation
Indices: 7806168--7806192 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7806158 AATCGATTCA
7806168 TATTTAG
1 TATTTAG
7806175 TATTTAG
1 TATTTAG
7806182 TATTTAG
1 TATTTAG
7806189 TATT
1 TATT
7806193 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:7806739 original size:29 final size:30
Alignment explanation
Indices: 7806676--7806739 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 30
7806666 TATGACGCAA
* * *
7806676 GCCCATCAACAGCGCCCACACAATCACCTG
1 GCCCAGCAACAGCACCCACACAATCACCGG
* *
7806706 ACCCAGCAA-AGCACCCACACAGTCACCGG
1 GCCCAGCAACAGCACCCACACAATCACCGG
7806735 GCCCA
1 GCCCA
7806740 ACACTTCAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
29 21 0.75
30 7 0.25
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (30 bp):
GCCCAGCAACAGCACCCACACAATCACCGG
Found at i:7806816 original size:18 final size:18
Alignment explanation
Indices: 7806793--7806830 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7806783 TGCCAGGTGC
* *
7806793 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
7806811 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
7806829 GT
1 GT
7806831 TTTCTTTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:7812281 original size:16 final size:18
Alignment explanation
Indices: 7812250--7812283 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
7812240 TCCTAATTCT
7812250 CCCTTTTCCTTTTCTTTC
1 CCCTTTTCCTTTTCTTTC
7812268 CCCTTTT-C-TTTCTTTC
1 CCCTTTTCCTTTTCTTTC
7812284 TTTTTCGTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 1 0.06
18 7 0.44
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (18 bp):
CCCTTTTCCTTTTCTTTC
Found at i:7813678 original size:126 final size:126
Alignment explanation
Indices: 7813453--7813865 Score: 632
Period size: 124 Copynumber: 3.3 Consensus size: 126
7813443 GCCAAATAGG
* * *
7813453 AACTACTATAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTATTTTTACTGACATTGCATCC
1 AACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACATTGCATCC
7813518 TGCTTGAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
66 TGCTTGAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
* * * * *
7813579 AACTACTGTAGCAAAAGAGCATCTACATGGGAGCTTCTTTTAGTACTTTTGCTGACATTACATCC
1 AACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACATTGCATCC
* *
7813644 TGCTTGATGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTC-AAATT-TTTTTTCAAA
66 TGCTTGAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
* * *
7813703 AACTACTGTTGCAAAAGAACGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCC
1 AACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACATTGCATCC
* * * * *
7813768 TGCTTAAAGCGTTTTTGACACTATTTTCTCAGAAACGTCTTCTCAGAATTATTTTTTTCAGG
66 TGCTTGAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTA-TTTTTTCAGA
*
7813830 AACTACTGTAGCAAAAGAGTGTCCACGTGGGAGCTT
1 AACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTT
7813866 TTTTAAATTA
Statistics
Matches: 256, Mismatches: 28, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
124 106 0.41
125 9 0.04
126 100 0.39
127 41 0.16
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (126 bp):
AACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACATTGCATCC
TGCTTGAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTCAGA
Found at i:7814077 original size:95 final size:96
Alignment explanation
Indices: 7813902--7814424 Score: 747
Period size: 96 Copynumber: 5.5 Consensus size: 96
7813892 AGTAACCCTA
* *
7813902 AACCCCAAACCCTAATTTATTTGA-TTTTTCCTT-AAAACCTTAAACACTAAACCCTAATCTAAT
1 AACCCTAAACCCTAATTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAAT
*
7813965 CTTTTAAAAGTTTATAATTAATTTACTCAAGT
66 TTTTTAAAA-TTTATAATTAATTTACTCAAGT
* *
7813997 AACCCAAAACCCTAATTTATTTGATTTTTTCCTT-AAAACCCTAAACACAAAACCCTAATCTAAT
1 AACCCTAAACCCTAATTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAAT
7814061 TTTTTAAAATTTATAATTAATTTACTCAAGT
66 TTTTTAAAATTTATAATTAATTTACTCAAGT
* *
7814092 AACCCTAAACCCTAATTTATTTGATTTTTT--TTAAAAAACCCTCAACACTAAACCCTAATATAA
1 AACCCTAAACCCTAATTTATTTGATTTTTTCCTT-AAAAACCCTAAACACTAAACCCTAATCTAA
*
7814155 TTTTTTTCAAATTTATAATTAATTTACTCAAGT
65 -TTTTTTAAAATTTATAATTAATTTACTCAAGT
* *
7814188 AACCCTAAACCCTAATTTATTTGATTTTTT--TTAAAAAACCCTCAACACTAAACCCTAATATAA
1 AACCCTAAACCCTAATTTATTTGATTTTTTCCTT-AAAAACCCTAAACACTAAACCCTAATCTAA
*
7814251 TTTTTTTCAAATTTATAATTAATTTACTCAAGT
65 -TTTTTTAAAATTTATAATTAATTTACTCAAGT
* * * * * *
7814284 AGCCTTAAACCCTAATTTATTTGATTTTTTCTTTAAAAATCATAAACACTAAACCTTAATCTAAT
1 AACCCTAAACCCTAATTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAAT
* * *
7814349 TTTTTAAAATTTATAATTAATTTAATTAAGA
66 TTTTTAAAATTTATAATTAATTTACTCAAGT
* *
7814380 AACCCTAAACCCTTATTTATTTAATTTTTTCCTT-AAAACCCTAAA
1 AACCCTAAACCCTAATTTATTTGATTTTTTCCTTAAAAACCCTAAA
7814425 ATCTAAAAAT
Statistics
Matches: 395, Mismatches: 27, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
93 2 0.01
95 109 0.28
96 257 0.65
97 25 0.06
98 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.02, T:0.40
Consensus pattern (96 bp):
AACCCTAAACCCTAATTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAAT
TTTTTAAAATTTATAATTAATTTACTCAAGT
Found at i:7814150 original size:43 final size:43
Alignment explanation
Indices: 7814096--7814246 Score: 128
Period size: 43 Copynumber: 3.3 Consensus size: 43
7814086 TCAAGTAACC
7814096 CTAAACCCTAATTTATTTGATTTTTTTTAAAAAACCCTCAACA
1 CTAAACCCTAATTTATTTGATTTTTTTTAAAAAACCCTCAACA
* * * *
7814139 CTAAACCCTAATATAATTT--TTTTCAAATTTATAATTAATTTACTCAAGT-AACC
1 CTAAACCCTAAT-TTATTTGATTTT----TTT-TAA--AA--AAC-C--CTCAACA
7814192 CTAAACCCTAATTTATTTGATTTTTTTTAAAAAACCCTCAACA
1 CTAAACCCTAATTTATTTGATTTTTTTTAAAAAACCCTCAACA
7814235 CTAAACCCTAAT
1 CTAAACCCTAAT
7814247 ATAATTTTTT
Statistics
Matches: 84, Mismatches: 8, Indels: 32
0.68 0.06 0.26
Matches are distributed among these distances:
42 5 0.06
43 27 0.32
44 6 0.07
45 2 0.02
46 3 0.04
47 5 0.06
49 5 0.06
50 3 0.04
51 2 0.02
52 6 0.07
53 15 0.18
54 5 0.06
ACGTcount: A:0.38, C:0.21, G:0.02, T:0.39
Consensus pattern (43 bp):
CTAAACCCTAATTTATTTGATTTTTTTTAAAAAACCCTCAACA
Found at i:7814199 original size:53 final size:53
Alignment explanation
Indices: 7814139--7814299 Score: 150
Period size: 53 Copynumber: 3.2 Consensus size: 53
7814129 ACCCTCAACA
7814139 CTAAACCCTAATATAATTTTTTTCAAATTTATAATTAATTTACTCAAGTAACC
1 CTAAACCCTAATATAATTTTTTTCAAATTTATAATTAATTTACTCAAGTAACC
* * * *
7814192 CTAAACCCTAAT-TTATTTGATTTT----TTT-TAA--AA--AAC-C--CTCAACA
1 CTAAACCCTAATATAATTT--TTTTCAAATTTATAATTAATTTACTCAAGT-AACC
*
7814235 CTAAACCCTAATATAATTTTTTTCAAATTTATAATTAATTTACTCAAGTAGCC
1 CTAAACCCTAATATAATTTTTTTCAAATTTATAATTAATTTACTCAAGTAACC
*
7814288 TTAAACCCTAAT
1 CTAAACCCTAAT
7814300 TTATTTGATT
Statistics
Matches: 82, Mismatches: 10, Indels: 32
0.66 0.08 0.26
Matches are distributed among these distances:
42 5 0.06
43 15 0.18
44 6 0.07
45 2 0.02
46 3 0.04
47 5 0.06
49 5 0.06
50 3 0.04
51 2 0.02
52 6 0.07
53 25 0.30
54 5 0.06
ACGTcount: A:0.39, C:0.19, G:0.02, T:0.40
Consensus pattern (53 bp):
CTAAACCCTAATATAATTTTTTTCAAATTTATAATTAATTTACTCAAGTAACC
Found at i:7821756 original size:43 final size:43
Alignment explanation
Indices: 7821682--7821848 Score: 194
Period size: 43 Copynumber: 3.9 Consensus size: 43
7821672 GCTCTCACGA
* * * * * **
7821682 GCTTCCGTTTAACTCATATGAGTTTCTGTTCAATTCTTTTAAG
1 GCTTCTGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTTTAAG
* *
7821725 GCTTCTGTTAAACCCTTATAGGTTTCCGTTCAGCTCTTTT-AG
1 GCTTCTGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTTTAAG
* *
7821767 AGCTTTTGTTTAACCCGTATGGGTTTCCGTTCAGCTCTTTTATA-
1 -GCTTCTGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTTTA-AG
*
7821811 GCTTCTGTTTAACCCTTATGGGTTTCCTTTCAGCTCTT
1 GCTTCTGTTTAACCCTTATGGGTTTCCGTTCAGCTCTT
7821849 ACGAACTTCC
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
42 2 0.02
43 102 0.97
45 1 0.01
ACGTcount: A:0.16, C:0.22, G:0.16, T:0.46
Consensus pattern (43 bp):
GCTTCTGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTTTAAG
Found at i:7821825 original size:86 final size:86
Alignment explanation
Indices: 7821688--7821848 Score: 225
Period size: 86 Copynumber: 1.9 Consensus size: 86
7821678 ACGAGCTTCC
* * *
7821688 GTTTAACTCATATGAGTTTCTGTTCAATTCTTTTAAGGCTTCTGTTAAACCCTTATAGGTTTCCG
1 GTTTAACCCATATGAGTTTCCGTTCAACTCTTTTAAGGCTTCTGTTAAACCCTTATAGGTTTCCG
7821753 TTCAGCTCTTTTAGAGCTTTT
66 TTCAGCTCTTTTAGAGCTTTT
* * * * *
7821774 GTTTAACCCGTATGGGTTTCCGTTCAGCTCTTTTATA-GCTTCTGTTTAACCCTTATGGGTTTCC
1 GTTTAACCCATATGAGTTTCCGTTCAACTCTTTTA-AGGCTTCTGTTAAACCCTTATAGGTTTCC
*
7821838 TTTCAGCTCTT
65 GTTCAGCTCTT
7821849 ACGAACTTCC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
86 64 0.98
87 1 0.02
ACGTcount: A:0.17, C:0.21, G:0.16, T:0.46
Consensus pattern (86 bp):
GTTTAACCCATATGAGTTTCCGTTCAACTCTTTTAAGGCTTCTGTTAAACCCTTATAGGTTTCCG
TTCAGCTCTTTTAGAGCTTTT
Found at i:7824468 original size:15 final size:14
Alignment explanation
Indices: 7824447--7824482 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
7824437 ATAATCCTTA
*
7824447 ATAATTATCTTAAT
1 ATAATTATCCTAAT
7824461 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
7824476 ATAATTA
1 ATAATTA
7824483 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:7825895 original size:13 final size:13
Alignment explanation
Indices: 7825879--7825926 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
7825869 TCAAAAGTAT
*
7825879 TTCTTAAAATCAC
1 TTCTTAAAAGCAC
**
7825892 TTCTCCAAAGCAC
1 TTCTTAAAAGCAC
*
7825905 TTCTTAAAAGCAA
1 TTCTTAAAAGCAC
7825918 TTCTTAAAA
1 TTCTTAAAA
7825927 CCGATACTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.40, C:0.23, G:0.04, T:0.33
Consensus pattern (13 bp):
TTCTTAAAAGCAC
Found at i:7828445 original size:30 final size:30
Alignment explanation
Indices: 7828411--7828468 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
7828401 CAACTTAATA
7828411 AACAAATGCCTCTAAAATAATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
*
7828441 AACAAATGCCTTTAAAATAATAACAAAA
1 AACAAATGCCTCTAAAATAATAACAAAA
7828469 GTAATAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.59, C:0.16, G:0.03, T:0.22
Consensus pattern (30 bp):
AACAAATGCCTCTAAAATAATAACAAAATT
Found at i:7828530 original size:11 final size:11
Alignment explanation
Indices: 7828513--7828551 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
7828503 GAATAACAAT
7828513 AAAATAATAGC
1 AAAATAATAGC
* *
7828524 AACATAATAGT
1 AAAATAATAGC
*
7828535 AAAATGATAGC
1 AAAATAATAGC
7828546 AAAATA
1 AAAATA
7828552 GGAAGAAAAC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.62, C:0.08, G:0.10, T:0.21
Consensus pattern (11 bp):
AAAATAATAGC
Found at i:7828530 original size:22 final size:22
Alignment explanation
Indices: 7828505--7828547 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7828495 TATCCAAAGA
7828505 ATAACAATAAAATAATAGCAAC
1 ATAACAATAAAATAATAGCAAC
* * *
7828527 ATAATAGTAAAATGATAGCAA
1 ATAACAATAAAATAATAGCAA
7828548 AATAGGAAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAATAGCAAC
Found at i:7831154 original size:36 final size:36
Alignment explanation
Indices: 7831114--7831190 Score: 93
Period size: 36 Copynumber: 2.1 Consensus size: 36
7831104 GCCAGTAGTG
* *
7831114 TGTTTCAGG-TGGATTAGCTCTTATAAGCATTTGGTA
1 TGTTTC-GGATGGACTAGCTCTTATAAGCATCTGGTA
* * *
7831150 TGTTTCGGATGGACTAGCTCTTGTGAGCATCTGGTG
1 TGTTTCGGATGGACTAGCTCTTATAAGCATCTGGTA
7831186 TGTTT
1 TGTTT
7831191 TGGTGGGATT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
35 2 0.06
36 33 0.94
ACGTcount: A:0.17, C:0.13, G:0.29, T:0.42
Consensus pattern (36 bp):
TGTTTCGGATGGACTAGCTCTTATAAGCATCTGGTA
Found at i:7833852 original size:16 final size:16
Alignment explanation
Indices: 7833831--7833867 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
7833821 TCTGGTATAC
7833831 AAGTATTGAGAATTAT
1 AAGTATTGAGAATTAT
*
7833847 AAGTATTGAGAATTCT
1 AAGTATTGAGAATTAT
7833863 AAGTA
1 AAGTA
7833868 AATTTGTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.43, C:0.03, G:0.19, T:0.35
Consensus pattern (16 bp):
AAGTATTGAGAATTAT
Found at i:7834595 original size:10 final size:10
Alignment explanation
Indices: 7834580--7834605 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
7834570 CTTACTGATC
7834580 TGTTAGTATT
1 TGTTAGTATT
7834590 TGTTAGTATT
1 TGTTAGTATT
7834600 TGTTAG
1 TGTTAG
7834606 CACTTAATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.23, T:0.58
Consensus pattern (10 bp):
TGTTAGTATT
Found at i:7837996 original size:39 final size:39
Alignment explanation
Indices: 7837953--7838030 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
7837943 CATCCAAACG
*
7837953 TAAAAGAAAAAATGTTTAAGAAAGTATCGTTGATGAACA
1 TAAAAGAAAAAATGTTCAAGAAAGTATCGTTGATGAACA
* * *
7837992 TAAAAGAAAAAGTGTTCAAGACAGTGTCGTTGATGAACA
1 TAAAAGAAAAAATGTTCAAGAAAGTATCGTTGATGAACA
7838031 AATTAAATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.47, C:0.08, G:0.21, T:0.24
Consensus pattern (39 bp):
TAAAAGAAAAAATGTTCAAGAAAGTATCGTTGATGAACA
Found at i:7838666 original size:32 final size:32
Alignment explanation
Indices: 7838625--7838711 Score: 99
Period size: 33 Copynumber: 2.7 Consensus size: 32
7838615 AACTTTTCCG
*
7838625 GAAAATATTTTCAGGAAATC-TGCCAAACAGCA
1 GAAAATATTTTCAGGAAATCAT-CCAAACACCA
7838657 GAAAATATTTT-A-GATAGATTCATCCAAACACCA
1 GAAAATATTTTCAGGA-A-A-TCATCCAAACACCA
*
7838690 GAAAATATTTTCAGTAAATCAT
1 GAAAATATTTTCAGGAAATCAT
7838712 TTTACAGAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
30 2 0.04
31 2 0.04
32 16 0.34
33 23 0.49
34 3 0.06
35 1 0.02
ACGTcount: A:0.45, C:0.16, G:0.11, T:0.28
Consensus pattern (32 bp):
GAAAATATTTTCAGGAAATCATCCAAACACCA
Found at i:7838743 original size:34 final size:34
Alignment explanation
Indices: 7838691--7838756 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
7838681 CAAACACCAG
*
7838691 AAAATATTTTCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCAGTAAATCATTTTACAGAAAAGT
*
7838725 AAAACATTTTCTAG-AAATCATTTTACGGAAAA
1 AAAACATTTTC-AGTAAATCATTTTACAGAAAA
7838757 TATTTTACTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 27 0.93
35 2 0.07
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (34 bp):
AAAACATTTTCAGTAAATCATTTTACAGAAAAGT
Found at i:7843640 original size:218 final size:218
Alignment explanation
Indices: 7843262--7843698 Score: 874
Period size: 218 Copynumber: 2.0 Consensus size: 218
7843252 TGTTATCTTT
7843262 ATCTCTTGATGTATGTGGAAATTTTTTGATTTCTAAGTGAAAATGGTAGATTTTTGGTGAAAGGA
1 ATCTCTTGATGTATGTGGAAATTTTTTGATTTCTAAGTGAAAATGGTAGATTTTTGGTGAAAGGA
7843327 CCAAATTGTAAAGAAAGCAAGCTTTCTTTCTTCCCCTCTTCTTCTCACGTTAATTCATGCAAAAA
66 CCAAATTGTAAAGAAAGCAAGCTTTCTTTCTTCCCCTCTTCTTCTCACGTTAATTCATGCAAAAA
7843392 TGGTGGGAATGGATGGATGCTGTTCATCCTTCTTTCCACACATATATATACTAAATAAATTAATA
131 TGGTGGGAATGGATGGATGCTGTTCATCCTTCTTTCCACACATATATATACTAAATAAATTAATA
7843457 ATAATAAAATAATATCATTAAAA
196 ATAATAAAATAATATCATTAAAA
7843480 ATCTCTTGATGTATGTGGAAATTTTTTGATTTCTAAGTGAAAATGGTAGATTTTTGGTGAAAGGA
1 ATCTCTTGATGTATGTGGAAATTTTTTGATTTCTAAGTGAAAATGGTAGATTTTTGGTGAAAGGA
7843545 CCAAATTGTAAAGAAAGCAAGCTTTCTTTCTTCCCCTCTTCTTCTCACGTTAATTCATGCAAAAA
66 CCAAATTGTAAAGAAAGCAAGCTTTCTTTCTTCCCCTCTTCTTCTCACGTTAATTCATGCAAAAA
7843610 TGGTGGGAATGGATGGATGCTGTTCATCCTTCTTTCCACACATATATATACTAAATAAATTAATA
131 TGGTGGGAATGGATGGATGCTGTTCATCCTTCTTTCCACACATATATATACTAAATAAATTAATA
7843675 ATAATAAAATAATATCATTAAAA
196 ATAATAAAATAATATCATTAAAA
7843698 A
1 A
7843699 AATCAAATTA
Statistics
Matches: 219, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
218 219 1.00
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (218 bp):
ATCTCTTGATGTATGTGGAAATTTTTTGATTTCTAAGTGAAAATGGTAGATTTTTGGTGAAAGGA
CCAAATTGTAAAGAAAGCAAGCTTTCTTTCTTCCCCTCTTCTTCTCACGTTAATTCATGCAAAAA
TGGTGGGAATGGATGGATGCTGTTCATCCTTCTTTCCACACATATATATACTAAATAAATTAATA
ATAATAAAATAATATCATTAAAA
Found at i:7863988 original size:132 final size:132
Alignment explanation
Indices: 7863751--7864001 Score: 396
Period size: 132 Copynumber: 1.9 Consensus size: 132
7863741 CAAGAAAGTG
* * *
7863751 AAAGGATTTCTTCCTGATAACTTCTTTGATAGGGATGAAACCAAGTTACCTATGAATCTTATGAA
1 AAAGGATCTCTTCCTGATAACTTCTTTGATAAGGATGAAACCAAGTTACCTATGAATCTCATGAA
*
7863816 GCCTCCTAGGGAGAATAAACTGGCAGCAAAGCAGGCTAGTGCTCCAGAAACCAAAACAAAGCACG
66 GCCTCCTAGGGAGAATAAACAGGCAGCAAAGCAGGCTAGTGCTCCAGAAACCAAAACAAAGCACG
7863881 TT
131 TT
* *
7863883 AAAGGATCTCTTCCTGATGACTTCTTTGATAAGGATGATACCAAGTTACCTATGAATGC-CATGA
1 AAAGGATCTCTTCCTGATAACTTCTTTGATAAGGATGAAACCAAGTTACCTATGAAT-CTCATGA
* ** *
7863947 AGCCTCCTAGGGAGAATATACAGGCTTCAGAGCAGGCTAGTGCTCCAGAAACCAA
65 AGCCTCCTAGGGAGAATAAACAGGCAGCAAAGCAGGCTAGTGCTCCAGAAACCAA
7864002 GCAAGTAAAG
Statistics
Matches: 108, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
132 107 0.99
133 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (132 bp):
AAAGGATCTCTTCCTGATAACTTCTTTGATAAGGATGAAACCAAGTTACCTATGAATCTCATGAA
GCCTCCTAGGGAGAATAAACAGGCAGCAAAGCAGGCTAGTGCTCCAGAAACCAAAACAAAGCACG
TT
Found at i:7876443 original size:22 final size:22
Alignment explanation
Indices: 7876418--7876460 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
7876408 TAATAAAAAG
7876418 AATATCTACAAAATATTCCTAA
1 AATATCTACAAAATATTCCTAA
* *
7876440 AATATTTACAGAATATTCCTA
1 AATATCTACAAAATATTCCTA
7876461 CACTCCCCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (22 bp):
AATATCTACAAAATATTCCTAA
Found at i:7880177 original size:22 final size:22
Alignment explanation
Indices: 7880152--7880194 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
7880142 TAATAAAAAG
7880152 AATATCTACAAAATATTCCTAA
1 AATATCTACAAAATATTCCTAA
* *
7880174 AATATTTACAGAATATTCCTA
1 AATATCTACAAAATATTCCTA
7880195 CAACAACAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (22 bp):
AATATCTACAAAATATTCCTAA
Found at i:7897827 original size:28 final size:24
Alignment explanation
Indices: 7897787--7897851 Score: 76
Period size: 24 Copynumber: 2.5 Consensus size: 24
7897777 CTAAAATGGG
*
7897787 TTACAACAGTGAGTCCTCTTTTTGATTT
1 TTACAATAGTGAGT-C-CTTTTT--TTT
7897815 TTACAATAGTGAGTCCTTTTTTTT
1 TTACAATAGTGAGTCCTTTTTTTT
*
7897839 TAACAATAGTGAG
1 TTACAATAGTGAG
7897852 GTGTGAGAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 15 0.43
26 6 0.17
27 1 0.03
28 13 0.37
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.45
Consensus pattern (24 bp):
TTACAATAGTGAGTCCTTTTTTTT
Found at i:7897923 original size:44 final size:43
Alignment explanation
Indices: 7897843--7897930 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 43
7897833 TTTTTTTAAC
* * * *
7897843 AATAGTGAGGTGTGAGAGGGAAGGGAGAGGTGGTGGGGGGTTGG
1 AATAGTGAGGAGTGAGAGGAAAGCGAGAGGTAGT-GGGGGTTGG
*
7897887 AATAGTGAGGAGTGAGAGGAAAGACG-GTGGTAGTGGGGGTTGG
1 AATAGTGAGGAGTGAGAGGAAAG-CGAGAGGTAGTGGGGGTTGG
7897930 A
1 A
7897931 CACAACGGTG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
43 10 0.26
44 27 0.71
45 1 0.03
ACGTcount: A:0.26, C:0.01, G:0.55, T:0.18
Consensus pattern (43 bp):
AATAGTGAGGAGTGAGAGGAAAGCGAGAGGTAGTGGGGGTTGG
Found at i:7901826 original size:16 final size:18
Alignment explanation
Indices: 7901800--7901832 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7901790 TTAATTTAAA
7901800 TAAATTAA-TTTCTCAAT
1 TAAATTAATTTTCTCAAT
7901817 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
7901833 CCCAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:7901968 original size:4 final size:4
Alignment explanation
Indices: 7901959--7901987 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
7901949 TTTTCGATCT
7901959 TTAA TTAA TTAA TTAA TTAA TTAA -TAA TT
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TT
7901988 CGAAAAATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:7904543 original size:28 final size:28
Alignment explanation
Indices: 7904504--7904599 Score: 104
Period size: 28 Copynumber: 3.4 Consensus size: 28
7904494 TATACAGTAT
* *
7904504 CAGT-ACAGTGTGGGCCTTAACCCATTA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
*
7904531 CAGTAACAGTGTGTAGACCTTAGCCCAATA
1 CAGTAACAGTGTG--GGCCTTAGCCCAATA
* *
7904561 CAGTAACAGTGGGGGACTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
*
7904589 CAATAATCAGT
1 CAGTAA-CAGT
7904600 ACAATGTAGT
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
27 4 0.07
28 26 0.45
29 4 0.07
30 24 0.41
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTTAGCCCAATA
Found at i:7904563 original size:30 final size:29
Alignment explanation
Indices: 7904518--7904599 Score: 94
Period size: 30 Copynumber: 2.8 Consensus size: 29
7904508 ACAGTGTGGG
* * *
7904518 CCTTAACCCATTACAGTAACAGTGTGTAGA
1 CCTTAGCCCAATACAGTAACAGTG-GGAGA
*
7904548 CCTTAGCCCAATACAGTAACAGTGGGGGA
1 CCTTAGCCCAATACAGTAACAGTGGGAGA
*
7904577 -CTTAGCCCAATACAATAATCAGT
1 CCTTAGCCCAATACAGTAA-CAGT
7904600 ACAATGTAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
28 17 0.37
29 7 0.15
30 22 0.48
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.23
Consensus pattern (29 bp):
CCTTAGCCCAATACAGTAACAGTGGGAGA
Found at i:7904980 original size:27 final size:25
Alignment explanation
Indices: 7904949--7905199 Score: 277
Period size: 27 Copynumber: 9.3 Consensus size: 25
7904939 CCCTATGGGT
7904949 GTATTTCAGTCATTTTACCCTTCGAGG
1 GTATTTC-GTCATTTTACCCTTC-AGG
*
7904976 ATATTTCGATCATTTTACCCTTCGAGG
1 GTATTTCG-TCATTTTACCCTTC-AGG
*
7905003 GCATTTCGGTCATTTTACCCTTCAGG
1 GTATTTC-GTCATTTTACCCTTCAGG
*
7905029 ACTATTTCGATCATTTTACCCTTCAAGG
1 -GTATTTCG-TCATTTTACCCTTC-AGG
7905057 GTATTTCGATCATTTTACCCTTCAGG
1 GTATTTCG-TCATTTTACCCTTCAGG
*
7905083 TGTATTTCAGTTATTTTACCCTTCAAGG
1 -GTATTTC-GTCATTTTACCCTTC-AGG
*
7905111 GTATTTTGGTCATTTTACCCTTCAGTG
1 GTA-TTTCGTCATTTTACCCTTCAG-G
*
7905138 GTATTTCGATCATTTTACCCATTGAGG
1 GTATTTCG-TCATTTTACCC-TTCAGG
7905165 GTATTTCCGGTCATTTTACCCTTCAAGG
1 GTATTT-C-GTCATTTTACCCTTC-AGG
7905193 GTATTTC
1 GTATTTC
7905200 AATCATTTGC
Statistics
Matches: 197, Mismatches: 12, Indels: 30
0.82 0.05 0.13
Matches are distributed among these distances:
26 14 0.07
27 146 0.74
28 36 0.18
29 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.16, T:0.42
Consensus pattern (25 bp):
GTATTTCGTCATTTTACCCTTCAGG
Found at i:7904996 original size:54 final size:52
Alignment explanation
Indices: 7904919--7905207 Score: 314
Period size: 54 Copynumber: 5.3 Consensus size: 52
7904909 TCAACTCCTA
* * * *
7904919 AGGGTATATCAATTATTTTACCCTAT-GGGTGTATTTCAGTCATTTTACCCTTC
1 AGGGTATTTCGATCATTTTACCCT-TCGGG-GTATTTCGGTCATTTTACCCTTC
* *
7904972 GAGGATATTTCGATCATTTTACCCTTCGAGGGCATTTCGGTCATTTTACCCTTC
1 -AGGGTATTTCGATCATTTTACCCTTCG-GGGTATTTCGGTCATTTTACCCTTC
* * *
7905026 AGGACTATTTCGATCATTTTACCCTTCAAGGGTATTTCGATCATTTTACCCTTC
1 AGG-GTATTTCGATCATTTTACCCTTC-GGGGTATTTCGGTCATTTTACCCTTC
* * *
7905080 AGGTGTATTTC-AGTTATTTTACCCTTCAAGGGTATTTTGGTCATTTTACCCTTC
1 AGG-GTATTTCGA-TCATTTTACCCTTC-GGGGTATTTCGGTCATTTTACCCTTC
7905134 AGTGGTATTTCGATCATTTTACCCATT-GAGGGTATTTCCGGTCATTTTACCCTTC
1 AG-GGTATTTCGATCATTTTACCC-TTCG-GGGTATTT-CGGTCATTTTACCCTTC
*
7905189 AAGGGTATTTCAATCATTT
1 -AGGGTATTTCGATCATTT
7905208 GCCCTTGACT
Statistics
Matches: 205, Mismatches: 19, Indels: 21
0.84 0.08 0.09
Matches are distributed among these distances:
53 5 0.02
54 161 0.79
55 37 0.18
56 2 0.01
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.42
Consensus pattern (52 bp):
AGGGTATTTCGATCATTTTACCCTTCGGGGTATTTCGGTCATTTTACCCTTC
Found at i:7905045 original size:81 final size:80
Alignment explanation
Indices: 7904949--7905207 Score: 346
Period size: 81 Copynumber: 3.2 Consensus size: 80
7904939 CCCTATGGGT
* *
7904949 GTATTTC-AGTCATTTTACCCTTCGAGGATATTTCGATCATTTTACCCTTCGAGGGCATTTCGGT
1 GTATTTCGA-TCATTTTACCCTTC-AGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGGT
7905013 CATTTTACCCTTC-AGG
64 CATTTTACCCTTCAAGG
* *
7905029 ACTATTTCGATCATTTTACCCTTCAAGGGTATTTCGATCATTTTACCCTTC-AGGTGTATTTCAG
1 -GTATTTCGATCATTTTACCCTTC-AGGGTATTTCGATCATTTTACCCTTCGAGG-GTATTTCGG
*
7905093 TTATTTTACCCTTCAAGG
63 TCATTTTACCCTTCAAGG
* *
7905111 GTATTTTGGTCATTTTACCCTTCAGTGGTATTTCGATCATTTTACCCATT-GAGGGTATTTCCGG
1 GTATTTCGATCATTTTACCCTTCAG-GGTATTTCGATCATTTTACCC-TTCGAGGGTATTT-CGG
7905175 TCATTTTACCCTTCAAGG
63 TCATTTTACCCTTCAAGG
*
7905193 GTATTTCAATCATTT
1 GTATTTCGATCATTT
7905208 GCCCTTGACT
Statistics
Matches: 157, Mismatches: 14, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
80 5 0.03
81 112 0.71
82 40 0.25
ACGTcount: A:0.20, C:0.22, G:0.16, T:0.42
Consensus pattern (80 bp):
GTATTTCGATCATTTTACCCTTCAGGGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGGTCA
TTTTACCCTTCAAGG
Found at i:7907995 original size:20 final size:20
Alignment explanation
Indices: 7907967--7908006 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7907957 TGTTAAATTT
*
7907967 ATGATTTAAGGATTAGAGAA
1 ATGAGTTAAGGATTAGAGAA
*
7907987 ATGAGTTAAGGTTTAGAGAA
1 ATGAGTTAAGGATTAGAGAA
7908007 TAAATATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.28, T:0.30
Consensus pattern (20 bp):
ATGAGTTAAGGATTAGAGAA
Done.