Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 29 of 205
Found at i:8670365 original size:12 final size:12
Alignment explanation
Indices: 8670342--8670403 Score: 51
Period size: 12 Copynumber: 5.2 Consensus size: 12
8670332 TTTTAAAATT
8670342 ATTATCTTTTAAA
1 ATTAT-TTTTAAA
8670355 ATTATTTTTAAA
1 ATTATTTTTAAA
*
8670367 GA-TA--TTCAAA
1 -ATTATTTTTAAA
8670377 CA-TATTTTTAAA
1 -ATTATTTTTAAA
*
8670389 ATTATATTTAAA
1 ATTATTTTTAAA
8670401 ATT
1 ATT
8670404 TTAAAAAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
10 8 0.20
11 1 0.02
12 26 0.63
13 6 0.15
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.50
Consensus pattern (12 bp):
ATTATTTTTAAA
Found at i:8672036 original size:27 final size:28
Alignment explanation
Indices: 8672006--8672070 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 28
8671996 TGGGAAGAAG
* *
8672006 AAAGGTAATAGAGAA-AAAGAAAGAAAA
1 AAAGGAAATAGAGAAGAAAGAAAAAAAA
* *
8672033 AAAGGAAATTGGGAAGAAAGAAAAAAAA
1 AAAGGAAATAGAGAAGAAAGAAAAAAAA
8672061 AAA-GAAATAG
1 AAAGGAAATAG
8672071 TTTTTAAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 18 0.56
28 14 0.44
ACGTcount: A:0.69, C:0.00, G:0.23, T:0.08
Consensus pattern (28 bp):
AAAGGAAATAGAGAAGAAAGAAAAAAAA
Found at i:8672048 original size:46 final size:45
Alignment explanation
Indices: 8671932--8672055 Score: 144
Period size: 44 Copynumber: 2.8 Consensus size: 45
8671922 TTTAGCAAAG
* * * * * * *
8671932 AAAAGAAGAGAAAAA-GACATTAGGAAGAAAAAAGGTCATCGGGA
1 AAAAGAAGAAAAAAAGGAAATTGGGAAGAAGAAAGGTAATAGAGA
*
8671976 AAAAGAA-AAGAAAAGGAAATTGGGAAGAAGAAAGGTAATAGAGA
1 AAAAGAAGAAAAAAAGGAAATTGGGAAGAAGAAAGGTAATAGAGA
8672020 AAAAGAAAGAAAAAAAGGAAATTGGGAAGAAAGAAA
1 AAAAG-AAGAAAAAAAGGAAATTGGGAAG-AAGAAA
8672056 AAAAAAAAGA
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
43 5 0.07
44 35 0.52
45 2 0.03
46 19 0.28
47 6 0.09
ACGTcount: A:0.62, C:0.02, G:0.27, T:0.08
Consensus pattern (45 bp):
AAAAGAAGAAAAAAAGGAAATTGGGAAGAAGAAAGGTAATAGAGA
Found at i:8673192 original size:17 final size:17
Alignment explanation
Indices: 8673162--8673196 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8673152 TGTTTTTATT
*
8673162 TTTTTCATTAAACAATG
1 TTTTTAATTAAACAATG
*
8673179 TTTTTAATTTAACAATG
1 TTTTTAATTAAACAATG
8673196 T
1 T
8673197 AATTTAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (17 bp):
TTTTTAATTAAACAATG
Found at i:8677376 original size:25 final size:25
Alignment explanation
Indices: 8677359--8677440 Score: 119
Period size: 26 Copynumber: 3.1 Consensus size: 25
8677349 ATAGATTATA
8677359 AAAAAATAATTACATATAAAAAAAT
1 AAAAAATAATTACATATAAAAAAAT
*
8677384 AAAAAATAATTAAATATAAAAAAAAT
1 AAAAAATAATTACATAT-AAAAAAAT
8677410 AAAAAATAATTACATTATATTAAAAAAT
1 AAAAAATAATTACA-TATA--AAAAAAT
8677438 AAA
1 AAA
8677441 TATGCGTATG
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
25 16 0.31
26 22 0.43
27 3 0.06
28 10 0.20
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (25 bp):
AAAAAATAATTACATATAAAAAAAT
Found at i:8677385 original size:26 final size:26
Alignment explanation
Indices: 8677356--8677440 Score: 111
Period size: 25 Copynumber: 3.2 Consensus size: 26
8677346 CGTATAGATT
8677356 ATAAAAAAATAATTACATATAAAAAA
1 ATAAAAAAATAATTACATATAAAAAA
*
8677382 AT-AAAAAATAATTAAATATAAAAAA
1 ATAAAAAAATAATTACATATAAAAAA
8677407 A-ATAAAAAATAATTACATTATATTAAAAA
1 ATA-AAAAAATAATTACA-TATA--AAAAA
8677436 ATAAA
1 ATAAA
8677441 TATGCGTATG
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
25 23 0.45
26 15 0.29
27 4 0.08
29 8 0.16
30 1 0.02
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (26 bp):
ATAAAAAAATAATTACATATAAAAAA
Found at i:8677397 original size:19 final size:19
Alignment explanation
Indices: 8677356--8677411 Score: 51
Period size: 19 Copynumber: 2.8 Consensus size: 19
8677346 CGTATAGATT
*
8677356 ATAAAAAAATAATTACATATAA
1 ATAAAAAAA-AAATA-AT-TAA
8677378 A-AAAATAAAAAATAATTAA
1 ATAAAA-AAAAAATAATTAA
*
8677397 ATATAAAAAAAATAA
1 ATAAAAAAAAAATAA
8677412 AAAATAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
19 13 0.43
20 5 0.17
21 8 0.27
22 4 0.13
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (19 bp):
ATAAAAAAAAAATAATTAA
Found at i:8677527 original size:24 final size:24
Alignment explanation
Indices: 8677495--8677541 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
8677485 CATAGATTTA
** *
8677495 AAAAAATAATTAAATATGAAAAAT
1 AAAAAATAAAAAAATATAAAAAAT
8677519 AAAAAATAAAAAAATATAAAAAA
1 AAAAAATAAAAAAATATAAAAAA
8677542 ATTACTAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (24 bp):
AAAAAATAAAAAAATATAAAAAAT
Found at i:8679694 original size:44 final size:44
Alignment explanation
Indices: 8679645--8679808 Score: 180
Period size: 44 Copynumber: 3.9 Consensus size: 44
8679635 TAAGATTCAC
* * * *
8679645 AATCTTCAGCCTATTCCTCTGCTGTCTAGGGAGATAGGAATCAG-
1 AATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAAT-AGT
*
8679689 AATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAATTGT
1 AATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAATAGT
* *
8679733 AATTTTCAACTTATTCCACTGCTGACCAGGGAGATAGG----GT
1 AATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAATAGT
* * *
8679773 --TCTTCAATCTATTCCACTCCTGACCAGGAAGATAGG
1 AATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGG
8679809 GTCGGGGTCA
Statistics
Matches: 107, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
38 31 0.29
40 2 0.02
43 1 0.01
44 73 0.68
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (44 bp):
AATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAATAGT
Found at i:8681209 original size:19 final size:19
Alignment explanation
Indices: 8681186--8681225 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
8681176 TCACCTTGGC
*
8681186 CTCTCCTTTTTCTTTTCTTTT
1 CTCT-CTTTTT-TTTGCTTTT
8681207 CTCTCTTTTTTTTGCTTTT
1 CTCTCTTTTTTTTGCTTTT
8681226 TTTGAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 6 0.33
21 4 0.22
ACGTcount: A:0.00, C:0.25, G:0.03, T:0.72
Consensus pattern (19 bp):
CTCTCTTTTTTTTGCTTTT
Found at i:8688153 original size:24 final size:24
Alignment explanation
Indices: 8688126--8688186 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
8688116 AATATATACG
*
8688126 TATAGATTATAAAAAATAATTACA
1 TATAAATTATAAAAAATAATTACA
**
8688150 TATAAAAAATAAAAAATAATTACA
1 TATAAATTATAAAAAATAATTACA
*
8688174 T-TATATTA-AAAAA
1 TATAAATTATAAAAA
8688187 TAAATATGCG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
22 5 0.16
23 4 0.13
24 22 0.71
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (24 bp):
TATAAATTATAAAAAATAATTACA
Found at i:8688288 original size:16 final size:15
Alignment explanation
Indices: 8688241--8688288 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
8688231 TACATAGATT
*
8688241 TAAAAAAATAATTAAA
1 TAAAAAAATAA-AAAA
*
8688257 TATGAAAAATAAAAAA
1 TA-AAAAAATAAAAAA
8688273 TAAAAAATATAAAAAA
1 TAAAAAA-ATAAAAAA
8688289 ATTACTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 4 0.15
16 15 0.56
17 8 0.30
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (15 bp):
TAAAAAAATAAAAAA
Found at i:8688290 original size:24 final size:24
Alignment explanation
Indices: 8688243--8688288 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
8688233 CATAGATTTA
* *
8688243 AAAAAATAATTAAATATGAAAAAT
1 AAAAAATAATAAAATATAAAAAAT
8688267 AAAAAATAA-AAAATATAAAAAA
1 AAAAAATAATAAAATATAAAAAA
8688289 ATTACTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (24 bp):
AAAAAATAATAAAATATAAAAAAT
Found at i:8689703 original size:124 final size:124
Alignment explanation
Indices: 8689478--8689724 Score: 485
Period size: 124 Copynumber: 2.0 Consensus size: 124
8689468 AGTCAAAAGC
8689478 ATCTAGTTGAGTCATATATCTAACCACACAAATCATGCTTTTTCGAACATTCTCTTATACGAATT
1 ATCTAGTTGAGTCATATATCTAACCACACAAATCATGCTTTTTCGAACATTCTCTTATACGAATT
8689543 ATAATTCAATATCTAACCATTTCAATTACGTTTGCTAATTCAAAACTTTCAATCCAAGG
66 ATAATTCAATATCTAACCATTTCAATTACGTTTGCTAATTCAAAACTTTCAATCCAAGG
*
8689602 ATCTGGTTGAGTCATATATCTAACCACACAAATCATGCTTTTTCGAACATTCTCTTATACGAATT
1 ATCTAGTTGAGTCATATATCTAACCACACAAATCATGCTTTTTCGAACATTCTCTTATACGAATT
8689667 ATAATTCAATATCTAACCATTTCAATTACGTTTGCTAATTCAAAACTTTCAATCCAAG
66 ATAATTCAATATCTAACCATTTCAATTACGTTTGCTAATTCAAAACTTTCAATCCAAG
8689725 CAATCAAATA
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
124 122 1.00
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.36
Consensus pattern (124 bp):
ATCTAGTTGAGTCATATATCTAACCACACAAATCATGCTTTTTCGAACATTCTCTTATACGAATT
ATAATTCAATATCTAACCATTTCAATTACGTTTGCTAATTCAAAACTTTCAATCCAAGG
Found at i:8691514 original size:43 final size:43
Alignment explanation
Indices: 8691467--8691648 Score: 337
Period size: 43 Copynumber: 4.2 Consensus size: 43
8691457 CCAAAACAGA
*
8691467 GTCTTACACATAAACACAAGTCGATGCCAACGTCCCAGACGTG
1 GTCTTACACGTAAACACAAGTCGATGCCAACGTCCCAGACGTG
*
8691510 GTCTTATACGTAAACACAAGTCGATGCCAACGTCCCAGACGTG
1 GTCTTACACGTAAACACAAGTCGATGCCAACGTCCCAGACGTG
*
8691553 ATCTTACACGTAAACACAAGTCGATGCCAACGTCCCAGACGTG
1 GTCTTACACGTAAACACAAGTCGATGCCAACGTCCCAGACGTG
8691596 GTCTTACACGTAAACACAAGTCGATGCCAACGTCCCAGACGTG
1 GTCTTACACGTAAACACAAGTCGATGCCAACGTCCCAGACGTG
8691639 GTCTTACACG
1 GTCTTACACG
8691649 AAATCATATC
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 134 1.00
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.20
Consensus pattern (43 bp):
GTCTTACACGTAAACACAAGTCGATGCCAACGTCCCAGACGTG
Found at i:8694959 original size:23 final size:23
Alignment explanation
Indices: 8694933--8695013 Score: 67
Period size: 24 Copynumber: 3.4 Consensus size: 23
8694923 CACAACTTAT
*
8694933 CGGGATGCTCCAAAGAGCTATAA
1 CGGGAAGCTCCAAAGAGCTATAA
* *
8694956 CGGGAAGCTCGC-AAGAACTACATA
1 CGGGAAGCTC-CAAAGAGCTATA-A
*
8694980 CGGGAAGCT-CATAAGAGATAATAA
1 CGGGAAGCTCCA-AAGAGCT-ATAA
*
8695004 CGGGATGCTC
1 CGGGAAGCTC
8695014 TTTCGAGCTA
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
22 1 0.02
23 17 0.38
24 25 0.56
25 2 0.04
ACGTcount: A:0.36, C:0.21, G:0.27, T:0.16
Consensus pattern (23 bp):
CGGGAAGCTCCAAAGAGCTATAA
Found at i:8703176 original size:22 final size:22
Alignment explanation
Indices: 8703134--8703177 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
8703124 ATATAAAATT
*
8703134 AATAAAATATTTTCTTTTATAA
1 AATAAAATATTTTCTTATATAA
*
8703156 AATAAATTATGTTT-TTATATAA
1 AATAAAATAT-TTTCTTATATAA
8703178 TAATTCAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (22 bp):
AATAAAATATTTTCTTATATAA
Found at i:8703764 original size:19 final size:18
Alignment explanation
Indices: 8703718--8703764 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
8703708 ACTCTGATTC
8703718 AAATTAAAAATAGTTTAT
1 AAATTAAAAATAGTTTAT
*
8703736 AAATT-TAAATAGATTT-T
1 AAATTAAAAATAG-TTTAT
8703753 AACATTAAAAAT
1 AA-ATTAAAAAT
8703765 TCAGATTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
17 9 0.38
18 11 0.46
19 4 0.17
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.38
Consensus pattern (18 bp):
AAATTAAAAATAGTTTAT
Found at i:8707654 original size:14 final size:14
Alignment explanation
Indices: 8707635--8707662 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8707625 TTATTTTTTT
8707635 TCAACCAGTTTGAA
1 TCAACCAGTTTGAA
8707649 TCAACCAGTTTGAA
1 TCAACCAGTTTGAA
8707663 AAAGTATTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (14 bp):
TCAACCAGTTTGAA
Found at i:8718444 original size:14 final size:14
Alignment explanation
Indices: 8718398--8718447 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
8718388 TTTCGAAAAA
8718398 TATTTAT-ATTAATT
1 TATTTATAATTAA-T
*
8718412 TAATTTAATATTTAA-
1 T-ATTT-ATAATTAAT
8718427 TATTTATAATTAAT
1 TATTTATAATTAAT
8718441 TATTTAT
1 TATTTAT
8718448 TTATTTGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
13 7 0.23
14 12 0.40
15 5 0.17
16 2 0.07
17 4 0.13
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TATTTATAATTAAT
Found at i:8725139 original size:10 final size:10
Alignment explanation
Indices: 8725114--8725145 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
8725104 GATAGAGATT
8725114 AAAACTTCTAG
1 AAAACTTCT-G
8725125 AAAACTTCTG
1 AAAACTTCTG
8725135 AAAACTTCTG
1 AAAACTTCTG
8725145 A
1 A
8725146 TAAATACTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.44, C:0.19, G:0.09, T:0.28
Consensus pattern (10 bp):
AAAACTTCTG
Found at i:8734398 original size:31 final size:30
Alignment explanation
Indices: 8734362--8734435 Score: 91
Period size: 29 Copynumber: 2.5 Consensus size: 30
8734352 TTAACGGCTC
8734362 AGTGACTAAAATGTTACAACATGTT-AA-CATA
1 AGTGACTAAAATGTT--AACAT-TTCAAGCATA
*
8734393 AGTGACTAAAACG-TAACATTTCAAGCATA
1 AGTGACTAAAATGTTAACATTTCAAGCATA
8734422 AGTGACTAAAATGT
1 AGTGACTAAAATGT
8734436 AACCTATAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
27 2 0.05
28 7 0.18
29 16 0.42
30 1 0.03
31 12 0.32
ACGTcount: A:0.45, C:0.14, G:0.15, T:0.27
Consensus pattern (30 bp):
AGTGACTAAAATGTTAACATTTCAAGCATA
Found at i:8747675 original size:29 final size:31
Alignment explanation
Indices: 8747642--8747707 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
8747632 AAAATATTTT
*
8747642 AAAATT-AAAAT-TATAAATAAAAAATTCTA
1 AAAATTCAAAATATATAAATAAAAAAATCTA
**
8747671 AAAATTCAAAATATATATGTAAAAAAATCTA
1 AAAATTCAAAATATATAAATAAAAAAATCTA
8747702 AAAATT
1 AAAATT
8747708 TTACAAAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
29 6 0.19
30 5 0.16
31 21 0.66
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (31 bp):
AAAATTCAAAATATATAAATAAAAAAATCTA
Found at i:8747891 original size:31 final size:32
Alignment explanation
Indices: 8747828--8747889 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
8747818 TTTCCAATGT
*
8747828 TTAATTGAAGCCAAAAATAAATAAATAAAAAG
1 TTAATTGAAGCCAAAAAAAAATAAATAAAAAG
8747860 TTAATTGAAG-CAAAAAAAAATCAAATAAAA
1 TTAATTGAAGCCAAAAAAAAAT-AAATAAAA
8747890 GTCTTGATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 10 0.36
32 18 0.64
ACGTcount: A:0.65, C:0.06, G:0.08, T:0.21
Consensus pattern (32 bp):
TTAATTGAAGCCAAAAAAAAATAAATAAAAAG
Found at i:8751441 original size:19 final size:21
Alignment explanation
Indices: 8751397--8751442 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 21
8751387 TTTTTTAACA
*
8751397 TAATTTTTAATAATTTATATT
1 TAATTTTAAATAATTTATATT
*
8751418 T-ATTTTAAAT-ATTT-TGTT
1 TAATTTTAAATAATTTATATT
8751436 TAATTTT
1 TAATTTT
8751443 TAGAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 4 0.18
19 9 0.41
20 8 0.36
21 1 0.05
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (21 bp):
TAATTTTAAATAATTTATATT
Found at i:8761441 original size:14 final size:13
Alignment explanation
Indices: 8761419--8761459 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
8761409 TTGGAAAAAA
8761419 TAATTATAATATT
1 TAATTATAATATT
*
8761432 TAATTTATAAT-TA
1 TAA-TTATAATATT
8761445 TAATTAT-ATATT
1 TAATTATAATATT
8761457 TAA
1 TAA
8761460 AAGTAATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
11 2 0.08
12 8 0.33
13 7 0.29
14 7 0.29
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TAATTATAATATT
Found at i:8761457 original size:20 final size:20
Alignment explanation
Indices: 8761418--8761458 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
8761408 TTTGGAAAAA
*
8761418 ATAATTATAATATTTAATTT
1 ATAATTATAATATATAATTT
8761438 ATAATTATAAT-TATATATTT
1 ATAATTATAATATATA-ATTT
8761458 A
1 A
8761459 AAAGTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
ATAATTATAATATATAATTT
Found at i:8761471 original size:24 final size:24
Alignment explanation
Indices: 8761418--8761517 Score: 109
Period size: 24 Copynumber: 4.2 Consensus size: 24
8761408 TTTGGAAAAA
**
8761418 ATAATTATAATATTTAATTTATAATT
1 ATAATTAT-ATATTTAA-AAATAATT
*
8761444 ATAATTATATATTTAAAAGTAATT
1 ATAATTATATATTTAAAAATAATT
* *
8761468 ATAATT-TA-A--TAAAAATTATG
1 ATAATTATATATTTAAAAATAATT
8761488 ATAATTATATATTTAAAAATAATT
1 ATAATTATATATTTAAAAATAATT
8761512 ATAATT
1 ATAATT
8761518 TATTATGATT
Statistics
Matches: 62, Mismatches: 8, Indels: 10
0.77 0.10 0.12
Matches are distributed among these distances:
20 14 0.23
21 2 0.03
22 2 0.03
23 2 0.03
24 26 0.42
25 8 0.13
26 8 0.13
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (24 bp):
ATAATTATATATTTAAAAATAATT
Found at i:8761484 original size:17 final size:18
Alignment explanation
Indices: 8761446--8761486 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
8761436 TTATAATTAT
*
8761446 AATTATATATTTAAAAGT
1 AATTATATATTTAAAAGA
8761464 AATTATA-ATTTAATAA-A
1 AATTATATATTTAA-AAGA
8761481 AATTAT
1 AATTAT
8761487 GATAATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
AATTATATATTTAAAAGA
Found at i:8761511 original size:27 final size:26
Alignment explanation
Indices: 8761463--8761534 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 26
8761453 TATTTAAAAG
8761463 TAATTATAATTTAATAAAAATTATGA
1 TAATTATAATTTAATAAAAATTATGA
*
8761489 TAATTATATATTTAA-AAATAATTATAA
1 TAATTATA-ATTTAATAAA-AATTATGA
* *
8761516 TTTATTATGATTTAATAAA
1 -TAATTATAATTTAATAAA
8761535 GTTTAATGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
26 11 0.28
27 19 0.49
28 9 0.23
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (26 bp):
TAATTATAATTTAATAAAAATTATGA
Found at i:8762805 original size:23 final size:23
Alignment explanation
Indices: 8762778--8762828 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
8762768 TAATTAGCAC
* *
8762778 AAATATTTTTTAA-AATTATAAAA
1 AAATATTATTTAACAAAT-TAAAA
8762801 AAATATTATTTAACAAATTAAAA
1 AAATATTATTTAACAAATTAAAA
8762824 AAATA
1 AAATA
8762829 ATAAAATCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 22 0.88
24 3 0.12
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
AAATATTATTTAACAAATTAAAA
Found at i:8780294 original size:16 final size:16
Alignment explanation
Indices: 8780244--8780288 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
8780234 ATCAAATCTA
* *
8780244 AAATAAATAATAGAAAT
1 AAATAAA-AATAAAAAG
*
8780261 AAATAAAAGTAAAAAG
1 AAATAAAAATAAAAAG
8780277 AAATAAAAATAA
1 AAATAAAAATAA
8780289 GTAGAACAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
16 17 0.71
17 7 0.29
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.18
Consensus pattern (16 bp):
AAATAAAAATAAAAAG
Found at i:8781420 original size:17 final size:16
Alignment explanation
Indices: 8781392--8781425 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
8781382 AATAAACCCT
*
8781392 AAAATAAAAAAACTTA
1 AAAATAAAAAAAATTA
8781408 AAAATATAAAAAAATTA
1 AAAATA-AAAAAAATTA
8781425 A
1 A
8781426 TAGAAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAATAAAAAAAATTA
Found at i:8781434 original size:18 final size:17
Alignment explanation
Indices: 8781392--8781425 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8781382 AATAAACCCT
8781392 AAAATAAAAAAACTTAA
1 AAAATAAAAAAACTTAA
8781409 AAATATAAAAAAA-TTAA
1 AAA-ATAAAAAAACTTAA
8781426 TAGAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAATAAAAAAACTTAA
Found at i:8782417 original size:25 final size:24
Alignment explanation
Indices: 8782339--8782440 Score: 97
Period size: 25 Copynumber: 4.3 Consensus size: 24
8782329 CACAAATGAA
* *
8782339 CAGAGAGCACTAAAGTGCTAT-A-
1 CAGAGAGCACTGACGTGCTATAAT
* *
8782361 CAGAGAGCACAGA--TG-TATTAAA
1 CAGAGAGCACTGACGTGCTA-TAAT
8782383 CAGAGAGCACTGACGTGCTAGTAAT
1 CAGAGAGCACTGACGTGCTA-TAAT
8782408 CAGAGAGCACTGACGTGCTAATAAT
1 CAGAGAGCACTGACGTGCT-ATAAT
*
8782433 CACAGAGC
1 CAGAGAGC
8782441 GCGCTAAAGT
Statistics
Matches: 67, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
19 2 0.03
20 3 0.04
21 1 0.01
22 23 0.34
24 2 0.03
25 35 0.52
26 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.18
Consensus pattern (24 bp):
CAGAGAGCACTGACGTGCTATAAT
Found at i:8783457 original size:23 final size:23
Alignment explanation
Indices: 8783428--8783472 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
8783418 ATAAGTACGT
8783428 ACATATATTAATTACAAATGTAA
1 ACATATATTAATTACAAATGTAA
* *
8783451 ACATATATTTATTACACATGTA
1 ACATATATTAATTACAAATGTA
8783473 TTTATAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.47, C:0.11, G:0.04, T:0.38
Consensus pattern (23 bp):
ACATATATTAATTACAAATGTAA
Found at i:8788730 original size:24 final size:24
Alignment explanation
Indices: 8788703--8788751 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
8788693 ATATAATTAT
8788703 AATAAAAGTTTGATTAGGTTCATG
1 AATAAAAGTTTGATTAGGTTCATG
8788727 AATAAAAGTTTGATTAGGTTCATG
1 AATAAAAGTTTGATTAGGTTCATG
8788751 A
1 A
8788752 GCATTATTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.39, C:0.04, G:0.20, T:0.37
Consensus pattern (24 bp):
AATAAAAGTTTGATTAGGTTCATG
Found at i:8794994 original size:16 final size:16
Alignment explanation
Indices: 8794973--8795005 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
8794963 AGAAAATGAG
8794973 ATTAAAGTGTAAACAT
1 ATTAAAGTGTAAACAT
8794989 ATTAAAGTGTAAACAT
1 ATTAAAGTGTAAACAT
8795005 A
1 A
8795006 CAACAATCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.30
Consensus pattern (16 bp):
ATTAAAGTGTAAACAT
Found at i:8796562 original size:11 final size:11
Alignment explanation
Indices: 8796546--8796588 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
8796536 TAGAATATAT
8796546 CCCATACCTTG
1 CCCATACCTTG
*
8796557 CCCATACCTTT
1 CCCATACCTTG
* *
8796568 CCCATATC-TA
1 CCCATACCTTG
8796578 CCCATACCTTG
1 CCCATACCTTG
8796589 GAAAGGTCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
10 8 0.31
11 18 0.69
ACGTcount: A:0.21, C:0.44, G:0.05, T:0.30
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:8799598 original size:11 final size:11
Alignment explanation
Indices: 8799582--8799612 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
8799572 TAGAATATAT
8799582 CCCATACCTTG
1 CCCATACCTTG
*
8799593 CCCATACCTTT
1 CCCATACCTTG
8799604 CCCATACCT
1 CCCATACCT
8799613 ACCCATACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.48, G:0.03, T:0.29
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:8800637 original size:11 final size:11
Alignment explanation
Indices: 8800617--8800646 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
8800607 TAAAAATAAA
8800617 AAAAAGTATTTT
1 AAAAA-TATTTT
8800629 AAAAATATTTT
1 AAAAATATTTT
8800640 AAAAATA
1 AAAAATA
8800647 AAAATAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:8801257 original size:16 final size:17
Alignment explanation
Indices: 8801236--8801274 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
8801226 ATCTTTATAT
8801236 ATTTTTTTATCCCTTCA
1 ATTTTTTTATCCCTTCA
**
8801253 ATTTTTTTATCTTTTCA
1 ATTTTTTTATCCCTTCA
8801270 ATTTT
1 ATTTT
8801275 CTTTCCTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.18, C:0.15, G:0.00, T:0.67
Consensus pattern (17 bp):
ATTTTTTTATCCCTTCA
Found at i:8804052 original size:22 final size:22
Alignment explanation
Indices: 8804021--8804071 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
8804011 CTCTCTAATC
8804021 CTCTCAATTTCCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
* *
8804043 CTTTCAATTTCCTTCTAAAATT
1 CTCTCAATTTCCTTCCAAAATT
8804065 CTCTCAA
1 CTCTCAA
8804072 ACCCATATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.27, C:0.29, G:0.00, T:0.43
Consensus pattern (22 bp):
CTCTCAATTTCCTTCCAAAATT
Found at i:8805503 original size:94 final size:94
Alignment explanation
Indices: 8805400--8805589 Score: 362
Period size: 94 Copynumber: 2.0 Consensus size: 94
8805390 AAAATGAAAT
*
8805400 GAATAAGTATATATACATAGGCCAATCGTGAAAATTCGTATACGTATATATTCAAATACATATAT
1 GAATAAGTATATATACATAGGCCAATCGTGAAAATTCGCATACGTATATATTCAAATACATATAT
8805465 ATATGTACAATATGTATATAAAATAATGG
66 ATATGTACAATATGTATATAAAATAATGG
*
8805494 GAATAAGTATATATACATAGGCCTATCGTGAAAATTCGCATACGTATATATTCAAATACATATAT
1 GAATAAGTATATATACATAGGCCAATCGTGAAAATTCGCATACGTATATATTCAAATACATATAT
8805559 ATATGTACAATATGTATATAAAATAATGG
66 ATATGTACAATATGTATATAAAATAATGG
8805588 GA
1 GA
8805590 TACATGAACT
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 94 1.00
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.33
Consensus pattern (94 bp):
GAATAAGTATATATACATAGGCCAATCGTGAAAATTCGCATACGTATATATTCAAATACATATAT
ATATGTACAATATGTATATAAAATAATGG
Found at i:8807940 original size:125 final size:125
Alignment explanation
Indices: 8807718--8808067 Score: 616
Period size: 123 Copynumber: 2.8 Consensus size: 125
8807708 CCCAAACTTG
*
8807718 CTACTGTAGCAAAATCGCGTCCACGAGGGTGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
* *
8807783 TAAAAGCGATTTTTTACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTACATGAC
*
8807843 CTACTGTAGCAAAATCGCGTACACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
* *
8807908 TAGAGGCAATTTTATACTATTTGCTCAGAAACGTC--AAAAAAATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTACATGAC
8807966 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
8808031 TAGAAGCGATTTTATACTATTTGAC-CAGAAACGTCAA
66 TAGAAGCGATTTTATACTATTTG-CTCAGAAACGTCAA
8808068 CTCGAAATAA
Statistics
Matches: 213, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
123 118 0.55
124 1 0.00
125 94 0.44
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.30
Consensus pattern (125 bp):
CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTACATGAC
Found at i:8808328 original size:29 final size:29
Alignment explanation
Indices: 8808263--8808328 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
8808253 GATTTCCCGG
*
8808263 AAAATGGCCCATTCCGGTAAATAATCAAA
1 AAAACGGCCCATTCCGGTAAATAATCAAA
* * ** *
8808292 AAATCGGCCCATTTCGGTAAATTTTGAAA
1 AAAACGGCCCATTCCGGTAAATAATCAAA
8808321 AAAACGGC
1 AAAACGGC
8808329 TTTTTTTGAT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.23
Consensus pattern (29 bp):
AAAACGGCCCATTCCGGTAAATAATCAAA
Found at i:8808788 original size:15 final size:15
Alignment explanation
Indices: 8808768--8808797 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8808758 TTTAAGACCC
8808768 ATTTTATATATGGGT
1 ATTTTATATATGGGT
8808783 ATTTTATATATGGGT
1 ATTTTATATATGGGT
8808798 CAGGCCTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (15 bp):
ATTTTATATATGGGT
Found at i:8814629 original size:22 final size:22
Alignment explanation
Indices: 8814604--8814650 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
8814594 CCTTTACTGG
8814604 AAAGAAATTCATTAATATTGAA
1 AAAGAAATTCATTAATATTGAA
8814626 AAAGAAATTCATTAATATTGAA
1 AAAGAAATTCATTAATATTGAA
8814648 AAA
1 AAA
8814651 CGAATGATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.57, C:0.04, G:0.09, T:0.30
Consensus pattern (22 bp):
AAAGAAATTCATTAATATTGAA
Found at i:8816220 original size:18 final size:18
Alignment explanation
Indices: 8816193--8816285 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
8816183 TACGACCGTT
8816193 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
8816211 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
8816229 TACAGTACTATTCATGTA
1 TACGGTACTATTCACGTA
* *
8816247 TACAGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
8816265 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
8816283 TAC
1 TAC
8816286 AGTAGTTGGG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:8816248 original size:36 final size:36
Alignment explanation
Indices: 8816197--8816287 Score: 146
Period size: 36 Copynumber: 2.5 Consensus size: 36
8816187 ACCGTTTACG
*
8816197 GTACTATTCACGTATACGGCACTATTCACGTATACA
1 GTACTATTCACGTATACAGCACTATTCACGTATACA
* *
8816233 GTACTATTCATGTATACAGCACTATTCACGTATACG
1 GTACTATTCACGTATACAGCACTATTCACGTATACA
*
8816269 GTACTGTTCACGTATACAG
1 GTACTATTCACGTATACAG
8816288 TAGTTGGGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (36 bp):
GTACTATTCACGTATACAGCACTATTCACGTATACA
Found at i:8820926 original size:18 final size:18
Alignment explanation
Indices: 8820899--8820991 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
8820889 TACGACCGTT
8820899 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
8820917 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
8820935 TACAGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
8820953 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
8820971 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
8820989 TAC
1 TAC
8820992 AGTAGTTGGG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:8825786 original size:15 final size:14
Alignment explanation
Indices: 8825749--8825791 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
8825739 AATATAATGT
8825749 AATAAAAT-AATAA
1 AATAAAATAAATAA
8825762 AATCAAAATACAATAA
1 AAT-AAAATA-AATAA
8825778 AATAAAATAGAATA
1 AATAAAATA-AATA
8825792 TTAGAATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
13 3 0.12
14 5 0.19
15 10 0.38
16 8 0.31
ACGTcount: A:0.72, C:0.05, G:0.02, T:0.21
Consensus pattern (14 bp):
AATAAAATAAATAA
Found at i:8826615 original size:31 final size:31
Alignment explanation
Indices: 8826577--8826638 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
8826567 AGGCAAATTA
8826577 CAAGAGTAATTGAA-TCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATTCC-AATAAAACTCTTT
8826608 CAAGAGTAATTGAATTCCAATAAAACTCTTT
1 CAAGAGTAATTGAATTCCAATAAAACTCTTT
8826639 AAAATTATCT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 27 0.90
32 3 0.10
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (31 bp):
CAAGAGTAATTGAATTCCAATAAAACTCTTT
Found at i:8828020 original size:12 final size:12
Alignment explanation
Indices: 8828003--8828039 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
8827993 TTAAAATATT
8828003 AAAAATTAGAAA
1 AAAAATTAGAAA
8828015 AAAAATTAG-AA
1 AAAAATTAGAAA
*
8828026 AAAAATTATAAA
1 AAAAATTAGAAA
8828038 AA
1 AA
8828040 TAGTAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (12 bp):
AAAAATTAGAAA
Found at i:8828038 original size:20 final size:20
Alignment explanation
Indices: 8828015--8828068 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 20
8828005 AAATTAGAAA
8828015 AAAAATTAGAAAAAAATTAT
1 AAAAATTAGAAAAAAATTAT
8828035 AAAAA-TAGTAAAAAAATTAT
1 AAAAATTAG-AAAAAAATTAT
8828055 AAAATATATAGAAA
1 AAAA-AT-TAGAAA
8828069 TATAAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
19 3 0.10
20 20 0.67
21 1 0.03
22 3 0.10
23 3 0.10
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (20 bp):
AAAAATTAGAAAAAAATTAT
Found at i:8828057 original size:11 final size:11
Alignment explanation
Indices: 8828003--8828086 Score: 58
Period size: 11 Copynumber: 8.2 Consensus size: 11
8827993 TTAAAATATT
*
8828003 AAAAATTAGAAA
1 AAAAATTA-TAA
*
8828015 AAAAATTAGAA
1 AAAAATTATAA
8828026 AAAAATTAT--
1 AAAAATTATAA
8828035 AAAAA-TAGTAA
1 AAAAATTA-TAA
8828046 AAAAATTAT--
1 AAAAATTATAA
*
8828055 -AAAA-TATAT
1 AAAAATTATAA
*
8828064 AGAAA-TATAA
1 AAAAATTATAA
8828074 AAAAATTATAA
1 AAAAATTATAA
8828085 AA
1 AA
8828087 TTTTATAAGT
Statistics
Matches: 59, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
7 3 0.05
8 6 0.10
9 6 0.10
10 11 0.19
11 23 0.39
12 10 0.17
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (11 bp):
AAAAATTATAA
Found at i:8828102 original size:29 final size:28
Alignment explanation
Indices: 8828027--8828087 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
8828017 AAATTAGAAA
*
8828027 AAAAT-TATAAAAATAGTAAAAAAATTAT
1 AAAATATATAGAAATA-TAAAAAAATTAT
8828055 AAAATATATAGAAATATAAAAAAATTAT
1 AAAATATATAGAAATATAAAAAAATTAT
8828083 AAAAT
1 AAAAT
8828088 TTTATAAGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 22 0.71
29 9 0.29
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (28 bp):
AAAATATATAGAAATATAAAAAAATTAT
Found at i:8828333 original size:36 final size:36
Alignment explanation
Indices: 8828285--8828355 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 36
8828275 GGGTCGTTAA
* *
8828285 TTTTTTATGATTTTTATA-AAATTTTACATTTTTTAT
1 TTTTTTACGATTTTTATAGAAA-ATTACATTTTTTAT
*
8828321 TTTTTTACGATTTTTATAGAAAATTATATTTTTTA
1 TTTTTTACGATTTTTATAGAAAATTACATTTTTTA
8828356 ATAATTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
36 28 0.90
37 3 0.10
ACGTcount: A:0.30, C:0.03, G:0.04, T:0.63
Consensus pattern (36 bp):
TTTTTTACGATTTTTATAGAAAATTACATTTTTTAT
Found at i:8834369 original size:63 final size:64
Alignment explanation
Indices: 8834220--8834371 Score: 218
Period size: 64 Copynumber: 2.4 Consensus size: 64
8834210 GACACGAGCA
* *
8834220 TGTGTCCAGGCCGTGTAACTCATTGATTACAAGATAAAGATCACACGGGTTAAGGACAAGAGGG
1 TGTGTCCAGGCCGTGTAACTCACTGATTACAAGATAAAGATCACACGGGGTAAGGACAAGAGGG
* * * *
8834284 TGTGTCCAGGCTGTGTAACTCACTGATTACAAGATAAGGATCATA-GGGGTAGGGACAA-AGGCG
1 TGTGTCCAGGCCGTGTAACTCACTGATTACAAGATAAAGATCACACGGGGTAAGGACAAGAGG-G
*
8834347 TGTGTCCAGGCCGTGTGACTCACTG
1 TGTGTCCAGGCCGTGTAACTCACTG
8834372 TTGCTATTAG
Statistics
Matches: 79, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
62 3 0.04
63 35 0.44
64 41 0.52
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (64 bp):
TGTGTCCAGGCCGTGTAACTCACTGATTACAAGATAAAGATCACACGGGGTAAGGACAAGAGGG
Found at i:8836696 original size:29 final size:30
Alignment explanation
Indices: 8836637--8836694 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
8836627 TCCGAGCCTT
*
8836637 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
8836667 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
8836695 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:8836924 original size:13 final size:13
Alignment explanation
Indices: 8836906--8836937 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8836896 TTTCCAGCAA
8836906 TTATGAATTTATT
1 TTATGAATTTATT
8836919 TTATGAATTTATT
1 TTATGAATTTATT
*
8836932 TGATGA
1 TTATGA
8836938 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:8837145 original size:50 final size:50
Alignment explanation
Indices: 8837032--8837273 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
8837022 ATTTGGGTAA
* * *
8837032 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
8837088 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
8837138 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
8837188 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
8837238 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
8837274 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:8837221 original size:100 final size:103
Alignment explanation
Indices: 8837032--8837281 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
8837022 ATTTGGGTAA
8837032 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
8837097 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
8837138 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
8837200 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
8837238 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
8837282 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:8842391 original size:23 final size:23
Alignment explanation
Indices: 8842365--8842459 Score: 156
Period size: 23 Copynumber: 4.2 Consensus size: 23
8842355 AGTGCCACAT
8842365 TGATATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
8842388 TGATATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
* *
8842411 TG-GATGTAGCCAAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
*
8842433 TGAAATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
8842456 TGAT
1 TGAT
8842460 CAATAACACT
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
22 20 0.30
23 46 0.70
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.21
Consensus pattern (23 bp):
TGATATGTAGCCGAAGCTACCAC
Found at i:8842433 original size:45 final size:45
Alignment explanation
Indices: 8842369--8842457 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
8842359 CCACATTGAT
* *
8842369 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
8842414 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
8842458 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:8842711 original size:18 final size:17
Alignment explanation
Indices: 8842685--8842723 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
8842675 ATTTTCCTTC
8842685 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
8842702 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
8842720 CACA
1 CACA
8842724 ATTTATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:8852751 original size:26 final size:27
Alignment explanation
Indices: 8852721--8852783 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
8852711 CTGCCTACAG
*
8852721 CAGTTTCT-GAATATCATAACATTTAT
1 CAGTTTCTAGAATATCATAACATGTAT
* * *
8852747 TAGTTT-TAGATTATCATAGCATGTAT
1 CAGTTTCTAGAATATCATAACATGTAT
8852773 CAGTTTC-AGAA
1 CAGTTTCTAGAA
8852784 CACTTACAGG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
25 1 0.03
26 28 0.97
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (27 bp):
CAGTTTCTAGAATATCATAACATGTAT
Found at i:8864019 original size:28 final size:28
Alignment explanation
Indices: 8863979--8864035 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
8863969 TGCTATGGAG
8863979 TATGACGAACTGTTAAGTGTTTCACGAT
1 TATGACGAACTGTTAAGTGTTTCACGAT
8864007 TATGACGAACTGTTAAGTGTTTCACGAT
1 TATGACGAACTGTTAAGTGTTTCACGAT
8864035 T
1 T
8864036 TCTTCTAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (28 bp):
TATGACGAACTGTTAAGTGTTTCACGAT
Found at i:8864427 original size:10 final size:10
Alignment explanation
Indices: 8864412--8864436 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8864402 ATAAGTCCTC
8864412 TTTTGCTTAA
1 TTTTGCTTAA
8864422 TTTTGCTTAA
1 TTTTGCTTAA
8864432 TTTTG
1 TTTTG
8864437 TCATATCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.08, G:0.12, T:0.64
Consensus pattern (10 bp):
TTTTGCTTAA
Found at i:8866134 original size:5 final size:5
Alignment explanation
Indices: 8866117--8866161 Score: 54
Period size: 5 Copynumber: 8.2 Consensus size: 5
8866107 TTTTGTATGA
8866117 ATTTT ACTTTT ATTTT ATTTT ACCATTTT ATTTT ATTTT ATTTT A
1 ATTTT A-TTTT ATTTT ATTTT ---ATTTT ATTTT ATTTT ATTTT A
8866162 ACAAGGACTC
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
5 26 0.72
6 5 0.14
8 5 0.14
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (5 bp):
ATTTT
Found at i:8866152 original size:23 final size:24
Alignment explanation
Indices: 8866117--8866161 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
8866107 TTTTGTATGA
8866117 ATTTTACTTTTATTTTATTTTACC
1 ATTTTACTTTTATTTTATTTTACC
8866141 ATTTTA-TTTTATTTTATTTTA
1 ATTTTACTTTTATTTTATTTTA
8866162 ACAAGGACTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.71
Consensus pattern (24 bp):
ATTTTACTTTTATTTTATTTTACC
Found at i:8876785 original size:27 final size:27
Alignment explanation
Indices: 8876747--8876799 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
8876737 GCGTTTAATG
*
8876747 GAGTAAGTTCATGGTTTTCACCTTTGA
1 GAGTAAGTTCATGATTTTCACCTTTGA
* *
8876774 GAGTGAGTTCATGATTTTCATCTTTG
1 GAGTAAGTTCATGATTTTCACCTTTG
8876800 CATTTATTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.23, T:0.43
Consensus pattern (27 bp):
GAGTAAGTTCATGATTTTCACCTTTGA
Found at i:8894313 original size:36 final size:35
Alignment explanation
Indices: 8894244--8894314 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 35
8894234 AGTCAAGGAT
*
8894244 TGTTGGGCACATTATTTGCCAATTATACTGACCAA
1 TGTTGGGCACATTATTTGCCAATTATACCGACCAA
* * *
8894279 TGTTGGGCACATTTATTTGTCGATTTTACCGACCAA
1 TGTTGGGCACA-TTATTTGCCAATTATACCGACCAA
8894315 CACAAGGCGC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 11 0.35
36 20 0.65
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (35 bp):
TGTTGGGCACATTATTTGCCAATTATACCGACCAA
Found at i:8896096 original size:25 final size:25
Alignment explanation
Indices: 8896068--8896150 Score: 123
Period size: 25 Copynumber: 3.3 Consensus size: 25
8896058 TAGCTCTTGA
8896068 GAGCATACCGATCTATAGCTCGTAT
1 GAGCATACCGATCTATAGCTCGTAT
8896093 GAGCATACCGATCTATAGCTCGTGA-
1 GAGCATACCGATCTATAGCTCGT-AT
* * *
8896118 GAGCATATCGATCTACAGCTCGAAT
1 GAGCATACCGATCTATAGCTCGTAT
8896143 GAGCATAC
1 GAGCATAC
8896151 TGATTCACAA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
24 1 0.02
25 50 0.96
26 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (25 bp):
GAGCATACCGATCTATAGCTCGTAT
Found at i:8896165 original size:50 final size:50
Alignment explanation
Indices: 8896065--8896175 Score: 143
Period size: 50 Copynumber: 2.2 Consensus size: 50
8896055 CCATAGCTCT
* * * *
8896065 TGAGAGCATACCGATCTATAGCTCGTATGAGCATACCGATCTATAGCTCG
1 TGAGAGCATACCGATCTACAGCTCGAATGAGCATACCGATCTACAACTCG
* *
8896115 TGAGAGCATATCGATCTACAGCTCGAATGAGCATACTGAT-TCACAACTCG
1 TGAGAGCATACCGATCTACAGCTCGAATGAGCATACCGATCT-ACAACTCG
*
8896165 TAAGAGCATAC
1 TGAGAGCATAC
8896176 ATGTACATGA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
49 1 0.02
50 51 0.98
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (50 bp):
TGAGAGCATACCGATCTACAGCTCGAATGAGCATACCGATCTACAACTCG
Found at i:8906588 original size:244 final size:243
Alignment explanation
Indices: 8906151--8906644 Score: 837
Period size: 244 Copynumber: 2.0 Consensus size: 243
8906141 TATTTCTCCT
* *
8906151 TCTAGTATTAGAGATTGTATGGGGTGGTGAGATGTGCTTGGTAACTCTAGATTTGAGATAACTTC
1 TCTAGTGTTAGAGATTGAATGGGGTGGTGAGATGTGCTTGGTAACTCTAGATTTGAGATAACTTC
* * * *
8906216 ACCAGTCTTATTATGTTTTCTATTTTATGAGTTGCATGTATTCATACATTTGCTTTTGAGTGAGA
66 ACCAGTCTTATCATGTTCTCTATTTTATGAGCTGCATGTATGCATACATTTGCTTTTGAGTGAGA
*
8906281 AAACCTTATGATGTTATTTCTTGTTTTACCTGAGATATACTGCAATGTTCCTATGCAATTAATAC
131 AAACCTTATGATGTTATTTCTTGTTTTACCAGAGATATACTGCAATGTTCCTATGCAATTAAT--
*
8906346 ACTCATTGCAGATGGATCCACCTTTCTTACATCATCCTGTCTAAGATTGG
194 ACTCATTGCAGATGGATCCACCTTTCTTACATCATCCCGTCTAAGATTGG
*
8906396 TCTAGTGTTAGAGATTGAATGGGGTGGTGAGATGTGCTTGGTAACTCTAGATTTGAG-TAACTTT
1 TCTAGTGTTAGAGATTGAATGGGGTGGTGAGATGTGCTTGGTAACTCTAGATTTGAGATAACTTC
8906460 ACCAGTCTTATCATGTTCTCTATTTTATGAGCTGCATGTATGCATACATTTGCTTTTGAGTGAGA
66 ACCAGTCTTATCATGTTCTCTATTTTATGAGCTGCATGTATGCATACATTTGCTTTTGAGTGAGA
* * *
8906525 AAGCCTTATGATGTTATTTCTTGTTTTACCAGAGATATACTGCCATGTTCCTTTGCAATTAATAC
131 AAACCTTATGATGTTATTTCTTGTTTTACCAGAGATATACTGCAATGTTCCTATGCAATTAATAC
* *
8906590 TCATTGCAGATTGATCCACCTTTCTTACATCATCCCGTCTAAGATTGT
196 TCATTGCAGATGGATCCACCTTTCTTACATCATCCCGTCTAAGATTGG
8906638 TCTAGTG
1 TCTAGTG
8906645 AAATTTATGC
Statistics
Matches: 235, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
242 54 0.23
244 126 0.54
245 55 0.23
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.40
Consensus pattern (243 bp):
TCTAGTGTTAGAGATTGAATGGGGTGGTGAGATGTGCTTGGTAACTCTAGATTTGAGATAACTTC
ACCAGTCTTATCATGTTCTCTATTTTATGAGCTGCATGTATGCATACATTTGCTTTTGAGTGAGA
AAACCTTATGATGTTATTTCTTGTTTTACCAGAGATATACTGCAATGTTCCTATGCAATTAATAC
TCATTGCAGATGGATCCACCTTTCTTACATCATCCCGTCTAAGATTGG
Found at i:8917912 original size:31 final size:31
Alignment explanation
Indices: 8917844--8917912 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
8917834 CTTAATAACC
8917844 TAGTGACTTAAATAAAAACTTTTGAATAGTT
1 TAGTGACTTAAATAAAAACTTTTGAATAGTT
** * *
8917875 CGGTGACTTAAATGAGAACTTTTGAATAGTT
1 TAGTGACTTAAATAAAAACTTTTGAATAGTT
8917906 TAGTGAC
1 TAGTGAC
8917913 CATTTTGTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (31 bp):
TAGTGACTTAAATAAAAACTTTTGAATAGTT
Found at i:8919110 original size:16 final size:16
Alignment explanation
Indices: 8919089--8919120 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8919079 TATATGTAAG
8919089 TACATAATGTTTTAAT
1 TACATAATGTTTTAAT
8919105 TACATAATGTTTTAAT
1 TACATAATGTTTTAAT
8919121 AAAAAAGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (16 bp):
TACATAATGTTTTAAT
Found at i:8919565 original size:29 final size:29
Alignment explanation
Indices: 8919532--8919587 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
8919522 ACCTTGACAT
* *
8919532 GAATTCTCAATGAACAAGTTTTTCACCCC
1 GAATTCTCAACGAACAAGTTTTCCACCCC
8919561 GAATTCTCAACGAACAAGTTTTCCACC
1 GAATTCTCAACGAACAAGTTTTCCACC
8919588 TCTTCCATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.32, C:0.29, G:0.11, T:0.29
Consensus pattern (29 bp):
GAATTCTCAACGAACAAGTTTTCCACCCC
Found at i:8922526 original size:15 final size:15
Alignment explanation
Indices: 8922488--8922529 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
8922478 TTTGAAAATA
*
8922488 ATTTATAAAAATAAT
1 ATTTATAAAATTAAT
*
8922503 -TTAATTAAAATTAAT
1 ATTTA-TAAAATTAAT
8922518 ATTTATAAAATT
1 ATTTATAAAATT
8922530 TTCATATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
14 3 0.14
15 16 0.73
16 3 0.14
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTTATAAAATTAAT
Found at i:8923278 original size:17 final size:19
Alignment explanation
Indices: 8923256--8923293 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
8923246 GGTTTTTTAT
*
8923256 TAAAATATTA-CAAAA-AA
1 TAAAATAATATCAAAATAA
8923273 TAAAATAATATCAAAATAA
1 TAAAATAATATCAAAATAA
8923292 TA
1 TA
8923294 TACAAAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 9 0.50
18 5 0.28
19 4 0.22
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (19 bp):
TAAAATAATATCAAAATAA
Found at i:8923388 original size:27 final size:27
Alignment explanation
Indices: 8923358--8923423 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
8923348 GGTCTGCCAC
8923358 AGGCGGCACCAATGGCGCCTGTGGCAA
1 AGGCGGCACCAATGGCGCCTGTGGCAA
* * *
8923385 AGGCGACACCAATGGTGCCTGTGGCAG
1 AGGCGGCACCAATGGCGCCTGTGGCAA
8923412 AGGCGGCACCAA
1 AGGCGGCACCAA
8923424 AATGTTCGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.24, C:0.29, G:0.36, T:0.11
Consensus pattern (27 bp):
AGGCGGCACCAATGGCGCCTGTGGCAA
Found at i:8923843 original size:152 final size:153
Alignment explanation
Indices: 8923432--8923934 Score: 704
Period size: 149 Copynumber: 3.3 Consensus size: 153
8923422 AAAATGTTCG
* * * * *
8923432 TATTTCAGCCCTTTGTTCCTATTTTTTTTCCCCGGATTTTATTAC--TTAAAAAATATACTATTT
1 TATTTCGGCCCTTTGTTCGTA-TTTTTTTCCCCAGATTTTATTACTTTTTAAAAATATAATATTT
8923495 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTT
65 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTT
* *
8923560 TTTAAATAAATTAAAAAAAATCCT
130 TTTAAATAAATTTAAAAAAACCCT
* * * ** *
8923584 TATTTCGG-CC-AT-TT-GT-TTTTTCT-CCCAAATTTTATTACTCTCAATAAAAATATATTATT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCCAGATTTTATTACT-T-TTTAAAAATATAATATT
*
8923643 TTCGT-ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTT-GCTGTG
64 TTC-TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAG-TGTG
8923706 TTTTTTAAATAAATTTAAAAAAACCCT
127 TTTTTTAAATAAATTTAAAAAAACCCT
* *
8923733 TATTTCGGCCCTTTGTTCGTA-TTTTTTCTCCGGATTTTATTACTTTTTAAAAATATAATATTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCCAGATTTTATTACTTTTTAAAAATATAATATTTT
8923797 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
66 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
8923862 TTAAATAAAATTTTTAAAAAAACCCT
131 TTAAAT-AAA--TTTAAAAAAACCCT
*
8923888 TATTTTGGCCCTTTGTTCGTATTTTTTTCCCCAGATTTTATTACTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCCAGATTTTATTACTTT
8923935 CAATAAAAAA
Statistics
Matches: 308, Mismatches: 25, Indels: 32
0.84 0.07 0.09
Matches are distributed among these distances:
145 13 0.04
146 6 0.02
148 2 0.01
149 106 0.34
150 4 0.01
151 4 0.01
152 91 0.30
153 12 0.04
154 13 0.04
155 34 0.11
156 23 0.07
ACGTcount: A:0.28, C:0.12, G:0.08, T:0.52
Consensus pattern (153 bp):
TATTTCGGCCCTTTGTTCGTATTTTTTTCCCCAGATTTTATTACTTTTTAAAAATATAATATTTT
CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
TTAAATAAATTTAAAAAAACCCT
Found at i:8924116 original size:27 final size:27
Alignment explanation
Indices: 8924077--8924142 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
8924067 TACGAACATG
8924077 TTGGTGCCGCCTCTGCCACAAGCACCA
1 TTGGTGCCGCCTCTGCCACAAGCACCA
* *
8924104 TTGTTGCCGCCTCTGCCACAGGCACCA
1 TTGGTGCCGCCTCTGCCACAAGCACCA
8924131 TTGGTGCCGCCT
1 TTGGTGCCGCCT
8924143 ATGGCAGACC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.14, C:0.39, G:0.24, T:0.23
Consensus pattern (27 bp):
TTGGTGCCGCCTCTGCCACAAGCACCA
Found at i:8924222 original size:11 final size:12
Alignment explanation
Indices: 8924200--8924244 Score: 51
Period size: 11 Copynumber: 3.9 Consensus size: 12
8924190 AAATAAACTT
8924200 TTTTGTATATTA
1 TTTTGTATATTA
8924212 TTTTG-ATATTA
1 TTTTGTATATTA
*
8924223 TTTT-TAT-TTT
1 TTTTGTATATTA
8924233 TTTTGTAATATT
1 TTTTGT-ATATT
8924245 TTAATAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
10 6 0.21
11 13 0.46
12 7 0.25
13 2 0.07
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71
Consensus pattern (12 bp):
TTTTGTATATTA
Found at i:8930767 original size:15 final size:15
Alignment explanation
Indices: 8930747--8930776 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8930737 CTCGAATTCA
*
8930747 ATTTAATAATTAAAT
1 ATTTAAAAATTAAAT
8930762 ATTTAAAAATTAAAT
1 ATTTAAAAATTAAAT
8930777 TAAATTATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
ATTTAAAAATTAAAT
Found at i:8932415 original size:6 final size:5
Alignment explanation
Indices: 8932390--8932420 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
8932380 ATATAATCTT
8932390 AAATA AAATA AAATA AAATAA AAATA AAATA
1 AAATA AAATA AAATA AAAT-A AAATA AAATA
8932421 CAATTTATCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:8932415 original size:11 final size:11
Alignment explanation
Indices: 8932390--8932420 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8932380 ATATAATCTT
8932390 AAATAAAAT-A
1 AAATAAAATAA
8932400 AAATAAAATAA
1 AAATAAAATAA
8932411 AAATAAAATA
1 AAATAAAATA
8932421 CAATTTATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:8947918 original size:45 final size:46
Alignment explanation
Indices: 8947856--8947980 Score: 171
Period size: 45 Copynumber: 2.7 Consensus size: 46
8947846 TTATACGCCT
* * *
8947856 AAAATGATTAAGACCATAGCTGAAAGATGCTATGGCTTCATGATA-
1 AAAATGACTAAGACCATAGCTGAAAGACGCTATGGCATCATGATAG
* *
8947901 AAAATGAGTAAGACCATAGCTGAAAGGCGCTATGGCATCATGATAG
1 AAAATGACTAAGACCATAGCTGAAAGACGCTATGGCATCATGATAG
* *
8947947 AAACAAGACTAAGACCATGGCTGAAAGACGCTAT
1 AAA-ATGACTAAGACCATAGCTGAAAGACGCTAT
8947981 TGTAATACCC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
45 41 0.59
46 3 0.04
47 26 0.37
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.21
Consensus pattern (46 bp):
AAAATGACTAAGACCATAGCTGAAAGACGCTATGGCATCATGATAG
Found at i:8958126 original size:172 final size:172
Alignment explanation
Indices: 8957834--8958168 Score: 580
Period size: 172 Copynumber: 1.9 Consensus size: 172
8957824 GACTCAATGG
* ** *
8957834 ATGTAACATCCTAAACCTGGCCTAGACGGAAAACTATGTTTAGAATGTTACATTGTCTTACCAAA
1 ATGTAACACCCTAAACCCAGCCTAGACGGAAAACTAAGTTTAGAATGTTACATTGTCTTACCAAA
8957899 ACCCAGTCATACTTAACCATTGTTAAATTATAAAACAACCAATATCCAAAATATAGTCATGTCAT
66 ACCCAGTCATACTTAACCATTGTTAAATTATAAAACAACCAATATCCAAAATATAGTCATGTCAT
* *
8957964 ACAAGTTTAAATAATACAAACTAATCATAGGTTTAACACTAA
131 ACAAGTTTAAACAATACAAACTAAACATAGGTTTAACACTAA
* *
8958006 ATGTAACACCCTAAACCCAGCCTAGATGGAAAACTAAGTTTAGAATGTTACATTGTCTTACCAGA
1 ATGTAACACCCTAAACCCAGCCTAGACGGAAAACTAAGTTTAGAATGTTACATTGTCTTACCAAA
*
8958071 ACCCAGTCATACTTAACCATTGTTAAATTATAAAACAACCAATATCCAGAATATAGTCATGTCAT
66 ACCCAGTCATACTTAACCATTGTTAAATTATAAAACAACCAATATCCAAAATATAGTCATGTCAT
*
8958136 ACAAGTTTAAACAATACGAACTAAACATAGGTT
131 ACAAGTTTAAACAATACAAACTAAACATAGGTT
8958169 CACACACATT
Statistics
Matches: 153, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
172 153 1.00
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (172 bp):
ATGTAACACCCTAAACCCAGCCTAGACGGAAAACTAAGTTTAGAATGTTACATTGTCTTACCAAA
ACCCAGTCATACTTAACCATTGTTAAATTATAAAACAACCAATATCCAAAATATAGTCATGTCAT
ACAAGTTTAAACAATACAAACTAAACATAGGTTTAACACTAA
Found at i:8961061 original size:51 final size:50
Alignment explanation
Indices: 8960892--8961172 Score: 287
Period size: 51 Copynumber: 5.6 Consensus size: 50
8960882 TTATTCAATT
* * * * * *
8960892 CTGCACATAGTACTACACATGTGATCGAAACTATCCAATACGCATAGTAGC
1 CTGCACATAGTACTACACATGTGA-CCATACCATCCGATACACGTAGTAGC
** * *
8960943 CTGCACATAGTACTACACATACGACC-TATCATTCCGGTACACGTAGTAGC
1 CTGCACATAGTACTACACATGTGACCATACCA-TCCGATACACGTAGTAGC
* *
8960993 CTGCACATAGTACTACACATGTGACCATTACCATCCGATACATGTAGTAGT
1 CTGCACATAGTACTACACATGTGACCA-TACCATCCGATACACGTAGTAGC
* * * * * *
8961044 CTGCACATAGTACTACACATGTGATCGAAACTATCCAATACGCATAGTAGC
1 CTGCACATAGTACTACACATGTGA-CCATACCATCCGATACACGTAGTAGC
** * * *
8961095 CTGCACATAGTACTACACATACGACC-TATCATTCCGGTACATGTAGTAGC
1 CTGCACATAGTACTACACATGTGACCATACCA-TCCGATACACGTAGTAGC
*
8961145 CTACACATAGTACTACACATGTGACCAT
1 CTGCACATAGTACTACACATGTGACCAT
8961173 CACTTTCACT
Statistics
Matches: 186, Mismatches: 38, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
49 4 0.02
50 76 0.41
51 100 0.54
52 6 0.03
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (50 bp):
CTGCACATAGTACTACACATGTGACCATACCATCCGATACACGTAGTAGC
Found at i:8961136 original size:101 final size:101
Alignment explanation
Indices: 8960986--8961168 Score: 287
Period size: 101 Copynumber: 1.8 Consensus size: 101
8960976 CCGGTACACG
** * *
8960986 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACATGTAGTAGTCTGCACA
1 TAGTAGCCTGCACATAGTACTACACATACGACCA-TACCATCCGATACATGTAGTAGCCTACACA
8961051 TAGTACTACACATGTGATCGAAACTATCCAATACGCA
65 TAGTACTACACATGTGATCGAAACTATCCAATACGCA
* *
8961088 TAGTAGCCTGCACATAGTACTACACATACGACC-TATCATTCCGGTACATGTAGTAGCCTACACA
1 TAGTAGCCTGCACATAGTACTACACATACGACCATACCA-TCCGATACATGTAGTAGCCTACACA
8961152 TAGTACTACACATGTGA
65 TAGTACTACACATGTGA
8961169 CCATCACTTT
Statistics
Matches: 74, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.53
102 31 0.42
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACATAGTACTACACATACGACCATACCATCCGATACATGTAGTAGCCTACACAT
AGTACTACACATGTGATCGAAACTATCCAATACGCA
Found at i:8961167 original size:152 final size:152
Alignment explanation
Indices: 8960891--8961172 Score: 546
Period size: 152 Copynumber: 1.9 Consensus size: 152
8960881 ATTATTCAAT
8960891 TCTGCACATAGTACTACACATGTGATCGAAACTATCCAATACGCATAGTAGCCTGCACATAGTAC
1 TCTGCACATAGTACTACACATGTGATCGAAACTATCCAATACGCATAGTAGCCTGCACATAGTAC
*
8960956 TACACATACGACCTATCATTCCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAT
66 TACACATACGACCTATCATTCCGGTACACGTAGTAGCCTACACATAGTACTACACATGTGACCAT
8961021 TACCATCCGATACATGTAGTAG
131 TACCATCCGATACATGTAGTAG
8961043 TCTGCACATAGTACTACACATGTGATCGAAACTATCCAATACGCATAGTAGCCTGCACATAGTAC
1 TCTGCACATAGTACTACACATGTGATCGAAACTATCCAATACGCATAGTAGCCTGCACATAGTAC
*
8961108 TACACATACGACCTATCATTCCGGTACATGTAGTAGCCTACACATAGTACTACACATGTGACCAT
66 TACACATACGACCTATCATTCCGGTACACGTAGTAGCCTACACATAGTACTACACATGTGACCAT
8961173 CACTTTCACT
Statistics
Matches: 128, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
152 128 1.00
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (152 bp):
TCTGCACATAGTACTACACATGTGATCGAAACTATCCAATACGCATAGTAGCCTGCACATAGTAC
TACACATACGACCTATCATTCCGGTACACGTAGTAGCCTACACATAGTACTACACATGTGACCAT
TACCATCCGATACATGTAGTAG
Found at i:8961192 original size:101 final size:99
Alignment explanation
Indices: 8960936--8961179 Score: 271
Period size: 101 Copynumber: 2.4 Consensus size: 99
8960926 CCAATACGCA
** **
8960936 TAGTAGCCTGCACATAGTACTACACATACGACCTATCA--TTCCGGTACACGTAGTAGCCTGCAC
1 TAGTAGCCTGCACATAGTACTACACATGTGACC-ATCACTTTCCAATACA--TAGTAGCCTGCAC
**
8960999 ATAGTACTACACATGTGACCATTACCATCCGATACATG
63 ATAGTACTACACATACGACCA-TACCATCCGATACATG
* * * *
8961037 TAGTAGTCTGCACATAGTACTACACATGTGATCGA-AACTATCCAATACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACATAGTACTACACATGTGA-CCATCACTTTCCAATA--CATAGTAGCCTGCAC
* *
8961101 ATAGTACTACACATACGACC-TATCATTCCGGTACATG
63 ATAGTACTACACATACGACCATACCA-TCCGATACATG
*
8961138 TAGTAGCCTACACATAGTACTACACATGTGACCATCACTTTC
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTTTC
8961180 ACTTTTACAT
Statistics
Matches: 119, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
100 7 0.06
101 73 0.61
102 37 0.31
104 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTTTCCAATACATAGTAGCCTGCACATA
GTACTACACATACGACCATACCATCCGATACATG
Found at i:8963575 original size:55 final size:55
Alignment explanation
Indices: 8963509--8963614 Score: 203
Period size: 55 Copynumber: 1.9 Consensus size: 55
8963499 GGCACTAAGT
8963509 GTGCGAAACTAAAATATCGATGTTGAATAACGGGCACTAAGTGTGCGAAACTTTA
1 GTGCGAAACTAAAATATCGATGTTGAATAACGGGCACTAAGTGTGCGAAACTTTA
*
8963564 GTGCGAAACTAAAATATCGATGTTGAATAACGGGTACTAAGTGTGCGAAAC
1 GTGCGAAACTAAAATATCGATGTTGAATAACGGGCACTAAGTGTGCGAAAC
8963615 AAAAATGACG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 50 1.00
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.25
Consensus pattern (55 bp):
GTGCGAAACTAAAATATCGATGTTGAATAACGGGCACTAAGTGTGCGAAACTTTA
Found at i:8963627 original size:42 final size:42
Alignment explanation
Indices: 8963564--8963653 Score: 128
Period size: 42 Copynumber: 2.1 Consensus size: 42
8963554 CGAAACTTTA
* ** *
8963564 GTGCGAAACTAAAATATCGATGTTGAATAACGGGTACTAAGT
1 GTGCGAAACAAAAATATCGATGTCAAATAACGGGAACTAAGT
8963606 GTGCGAAACAAAAATGA-CGATGTCAAATAACGGGAACTAAGT
1 GTGCGAAACAAAAAT-ATCGATGTCAAATAACGGGAACTAAGT
8963648 GTGCGA
1 GTGCGA
8963654 TACCAAGATC
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 42 0.98
43 1 0.02
ACGTcount: A:0.40, C:0.13, G:0.26, T:0.21
Consensus pattern (42 bp):
GTGCGAAACAAAAATATCGATGTCAAATAACGGGAACTAAGT
Found at i:8971524 original size:5 final size:5
Alignment explanation
Indices: 8971514--8971538 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
8971504 AAGCTGCTTG
8971514 AGTTT AGTTT AGTTT AGTTT AGTTT
1 AGTTT AGTTT AGTTT AGTTT AGTTT
8971539 TTTTTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
AGTTT
Found at i:8974188 original size:3 final size:3
Alignment explanation
Indices: 8974168--8974207 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
8974158 TGCGCATGAA
* *
8974168 AAT AAA AAT AAA AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
8974208 CAAGATTAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:8974397 original size:15 final size:16
Alignment explanation
Indices: 8974379--8974411 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
8974369 AAATGTAAAC
8974379 AAATTTGAAAAT-AAT
1 AAATTTGAAAATGAAT
8974394 AAATTTGAAAATGAAT
1 AAATTTGAAAATGAAT
8974410 AA
1 AA
8974412 TAAGGGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (16 bp):
AAATTTGAAAATGAAT
Found at i:8974710 original size:19 final size:19
Alignment explanation
Indices: 8974686--8974739 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
8974676 AATCATATCT
8974686 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
8974705 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
8974724 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
8974740 CTTGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:8974735 original size:38 final size:40
Alignment explanation
Indices: 8974663--8974739 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
8974653 AAATTAAATC
8974663 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTACAAAATCATA--TTCTAAGATTGCATATCATA
*
8974705 TCTAAGATTAC-ATATCATA-TCTAAGATTGCATATC
1 TCTAAGATTACAAAATCATATTCTAAGATTGCATATC
8974740 CTTGAAGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 16 0.47
41 7 0.21
42 11 0.32
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (40 bp):
TCTAAGATTACAAAATCATATTCTAAGATTGCATATCATA
Found at i:8978122 original size:61 final size:62
Alignment explanation
Indices: 8978046--8978208 Score: 210
Period size: 61 Copynumber: 2.6 Consensus size: 62
8978036 TTGTTATTAA
*
8978046 ATTTTAATA-AGATTATTATTAAATGTAATTTAATAAAAATAAAAATAAATAATTTAAT-CAT
1 ATTTTAATATA-ATTATTATTAAATATAATTTAATAAAAATAAAAATAAATAATTTAATACAT
* * *
8978107 ATTTTAATATAATTATTATTAAATATAATTTAAT-AAAACAATAATATATAATTTAATAACAT
1 ATTTTAATATAATTATTATTAAATATAATTTAATAAAAATAAAAATAAATAATTTAAT-ACAT
*
8978169 -TTTTAATATAATTATTATAAAAATATGAA-TTAATAAAAAT
1 ATTTTAATATAATTATTAT-TAAATAT-AATTTAATAAAAAT
8978209 CATAACATAA
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
60 20 0.22
61 49 0.54
62 15 0.17
63 6 0.07
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (62 bp):
ATTTTAATATAATTATTATTAAATATAATTTAATAAAAATAAAAATAAATAATTTAATACAT
Found at i:8990705 original size:16 final size:17
Alignment explanation
Indices: 8990684--8990721 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
8990674 GTTGGAAAAT
*
8990684 AATTT-TAAAATATAAA
1 AATTTATAAAATAGAAA
8990700 AATTTTATAAAATAGAAA
1 AA-TTTATAAAATAGAAA
8990718 AATT
1 AATT
8990722 GGTCTTCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 2 0.11
17 5 0.26
18 12 0.63
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (17 bp):
AATTTATAAAATAGAAA
Found at i:9003938 original size:3 final size:3
Alignment explanation
Indices: 9003932--9003975 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
9003922 CTACTACTAC
9003932 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
9003976 AAAACTAGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:9005551 original size:41 final size:41
Alignment explanation
Indices: 9005498--9005591 Score: 143
Period size: 41 Copynumber: 2.3 Consensus size: 41
9005488 CGAATCTATG
9005498 AAAGGTTGAAAAGAAAGTTATCCGAAAAAGATAACAAATGA
1 AAAGGTTGAAAAGAAAGTTATCCGAAAAAGATAACAAATGA
* * * * *
9005539 AAATGTTGAAAAGGATGTTATTCGAAAAGGATAACAAATGA
1 AAAGGTTGAAAAGAAAGTTATCCGAAAAAGATAACAAATGA
9005580 AAAGGTTGAAAA
1 AAAGGTTGAAAA
9005592 TATATCAATG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.53, C:0.05, G:0.21, T:0.20
Consensus pattern (41 bp):
AAAGGTTGAAAAGAAAGTTATCCGAAAAAGATAACAAATGA
Found at i:9005625 original size:24 final size:24
Alignment explanation
Indices: 9005560--9005656 Score: 115
Period size: 24 Copynumber: 4.0 Consensus size: 24
9005550 AGGATGTTAT
*
9005560 TCGAAAAGGATAACAAATGAAAAGG
1 TCGAAAAGGATATC-AATGAAAAGG
* * *
9005585 TTGAAAA-TATATCAATGAAAAGA
1 TCGAAAAGGATATCAATGAAAAGG
9005608 TCGAAAAGGATATCAATGAAAAGG
1 TCGAAAAGGATATCAATGAAAAGG
* * *
9005632 TTGAAAAGAATAGCAATGAAAAGG
1 TCGAAAAGGATATCAATGAAAAGG
9005656 T
1 T
9005657 TGGTATCTCA
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
23 15 0.25
24 40 0.66
25 6 0.10
ACGTcount: A:0.54, C:0.06, G:0.22, T:0.19
Consensus pattern (24 bp):
TCGAAAAGGATATCAATGAAAAGG
Found at i:9005633 original size:47 final size:49
Alignment explanation
Indices: 9005560--9005654 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 49
9005550 AGGATGTTAT
* *
9005560 TCGAAAAGGATAACAAATGAAAAGGTTGAAAA-TATATCAATGAAAAGA
1 TCGAAAAGGATAACAAATGAAAAGGTTGAAAAGAATAGCAATGAAAAGA
*
9005608 TCGAAAAGGATATC-AATGAAAAGGTTGAAAAGAATAGCAATGAAAAG
1 TCGAAAAGGATAACAAATGAAAAGGTTGAAAAGAATAGCAATGAAAAG
9005655 GTTGGTATCT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 17 0.40
48 26 0.60
ACGTcount: A:0.55, C:0.06, G:0.21, T:0.18
Consensus pattern (49 bp):
TCGAAAAGGATAACAAATGAAAAGGTTGAAAAGAATAGCAATGAAAAGA
Found at i:9005657 original size:24 final size:24
Alignment explanation
Indices: 9005575--9005658 Score: 116
Period size: 24 Copynumber: 3.5 Consensus size: 24
9005565 AAGGATAACA
*
9005575 AATGAAAAGGTTGAAAA-TATATC
1 AATGAAAAGGTTGAAAAGAATATC
* * *
9005598 AATGAAAAGATCGAAAAGGATATC
1 AATGAAAAGGTTGAAAAGAATATC
*
9005622 AATGAAAAGGTTGAAAAGAATAGC
1 AATGAAAAGGTTGAAAAGAATATC
9005646 AATGAAAAGGTTG
1 AATGAAAAGGTTG
9005659 GTATCTCATC
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
23 15 0.28
24 38 0.72
ACGTcount: A:0.52, C:0.05, G:0.23, T:0.20
Consensus pattern (24 bp):
AATGAAAAGGTTGAAAAGAATATC
Found at i:9007284 original size:42 final size:42
Alignment explanation
Indices: 9007205--9007286 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 42
9007195 ATCAAATGCA
* * * *
9007205 CACACGGGTTGGCACACGGTCGTGTAACCCTATTTCGAATAC
1 CACACGGGCTGGCACACGATCGTGTAACCATACTTCGAATAC
* **
9007247 CACACGGGCTGGGACACGATCGTGTGTCCATACTTCGAAT
1 CACACGGGCTGGCACACGATCGTGTAACCATACTTCGAAT
9007287 GTCCACAGGG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (42 bp):
CACACGGGCTGGCACACGATCGTGTAACCATACTTCGAATAC
Found at i:9007498 original size:21 final size:21
Alignment explanation
Indices: 9007472--9007516 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
9007462 TGAATGTTAG
9007472 TATTTAATTTGAATATTTGTT
1 TATTTAATTTGAATATTTGTT
9007493 TATTTAATTTGAATATTTGTT
1 TATTTAATTTGAATATTTGTT
9007514 TAT
1 TAT
9007517 GTTTGAAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (21 bp):
TATTTAATTTGAATATTTGTT
Found at i:9008323 original size:42 final size:42
Alignment explanation
Indices: 9008244--9008325 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 42
9008234 ATCAAATGCA
* * * *
9008244 CACACGGGTTGGCACACGGTCGTGTAACCCTATTTCGAATAC
1 CACACGGGCTGGCACACGATCGTGTAACCATACTTCGAATAC
* **
9008286 CACACGGGCTGGGACACGATCGTGTGTCCATACTTCGAAT
1 CACACGGGCTGGCACACGATCGTGTAACCATACTTCGAAT
9008326 GTCCACAGGG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (42 bp):
CACACGGGCTGGCACACGATCGTGTAACCATACTTCGAATAC
Found at i:9008537 original size:21 final size:21
Alignment explanation
Indices: 9008511--9008555 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
9008501 TGAATGTTAG
9008511 TATTTAATTTGAATATTTGTT
1 TATTTAATTTGAATATTTGTT
9008532 TATTTAATTTGAATATTTGTT
1 TATTTAATTTGAATATTTGTT
9008553 TAT
1 TAT
9008556 GTTTGAAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (21 bp):
TATTTAATTTGAATATTTGTT
Found at i:9011636 original size:11 final size:11
Alignment explanation
Indices: 9011616--9011644 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
9011606 TATTAAACAC
9011616 TTTT-TTTTCA
1 TTTTCTTTTCA
9011626 TTTTCTTTTCA
1 TTTTCTTTTCA
9011637 TTTTCTTT
1 TTTTCTTT
9011645 CTTCTTCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTCTTTTCA
Found at i:9012920 original size:36 final size:36
Alignment explanation
Indices: 9012873--9012942 Score: 140
Period size: 36 Copynumber: 1.9 Consensus size: 36
9012863 TCGTGCTTCA
9012873 CATTAGGCTATTTCATTAACCTGCCGTTTGACTGTC
1 CATTAGGCTATTTCATTAACCTGCCGTTTGACTGTC
9012909 CATTAGGCTATTTCATTAACCTGCCGTTTGACTG
1 CATTAGGCTATTTCATTAACCTGCCGTTTGACTG
9012943 ACGGTCAACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (36 bp):
CATTAGGCTATTTCATTAACCTGCCGTTTGACTGTC
Found at i:9013291 original size:30 final size:30
Alignment explanation
Indices: 9013248--9013345 Score: 119
Period size: 30 Copynumber: 3.3 Consensus size: 30
9013238 TAGATAGTAA
*
9013248 CAAATACAGATACAAATTCAGACACAGATG
1 CAAATACAAATACAAATTCAGACACAGATG
*
9013278 CATATACAAATACAAATTCAGACACAGATG
1 CAAATACAAATACAAATTCAGACACAGATG
* *
9013308 CAAAAATAGAAAT--AAATTCAGACACAAATG
1 C--AAATACAAATACAAATTCAGACACAGATG
*
9013338 CAGATACA
1 CAAATACA
9013346 GAATTAGACA
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
28 5 0.08
30 46 0.78
32 8 0.14
ACGTcount: A:0.53, C:0.18, G:0.11, T:0.17
Consensus pattern (30 bp):
CAAATACAAATACAAATTCAGACACAGATG
Found at i:9013311 original size:24 final size:24
Alignment explanation
Indices: 9013257--9013371 Score: 70
Period size: 30 Copynumber: 4.3 Consensus size: 24
9013247 ACAAATACAG
9013257 ATACAAATTCAGACACAGATGCATATACAA
1 ATACAAATTCAGACACAGATG------CAA
9013287 ATACAAATTCAGACACAGATGCAAAA
1 ATACAAATTCAGACACAGATGC--AA
* * *
9013313 ATAGAAATAAATTCAGACACAAATGCAG
1 AT----ACAAATTCAGACACAGATGCAA
9013341 ATACAGAATT-AGACACAGATGCAA
1 ATACA-AATTCAGACACAGATGCAA
*
9013365 AAACAAA
1 ATACAAA
9013372 AATAGAAATA
Statistics
Matches: 71, Mismatches: 7, Indels: 21
0.72 0.07 0.21
Matches are distributed among these distances:
23 2 0.03
24 19 0.27
25 4 0.06
26 4 0.06
28 3 0.04
30 39 0.55
ACGTcount: A:0.54, C:0.17, G:0.12, T:0.17
Consensus pattern (24 bp):
ATACAAATTCAGACACAGATGCAA
Found at i:9013377 original size:24 final size:24
Alignment explanation
Indices: 9013327--9013377 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
9013317 AAATAAATTC
* * * *
9013327 AGACACAAATGCAGATACAGAATT
1 AGACACAAATGCAAAAACAAAAAT
*
9013351 AGACACAGATGCAAAAACAAAAAT
1 AGACACAAATGCAAAAACAAAAAT
9013375 AGA
1 AGA
9013378 AATAGATACT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.57, C:0.16, G:0.16, T:0.12
Consensus pattern (24 bp):
AGACACAAATGCAAAAACAAAAAT
Found at i:9020524 original size:26 final size:25
Alignment explanation
Indices: 9020489--9020537 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
9020479 ATAGATAAAA
**
9020489 AAAATAAAATGTTAATAAATAAATGT
1 AAAATAAAATCATAATAAA-AAATGT
*
9020515 AAAATTAAATCATAATAAAAAAT
1 AAAATAAAATCATAATAAAAAAT
9020538 AAATACATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (25 bp):
AAAATAAAATCATAATAAAAAATGT
Found at i:9020533 original size:16 final size:17
Alignment explanation
Indices: 9020514--9020556 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
9020504 TAAATAAATG
9020514 TAAAATTAAAT-CATAA
1 TAAAATTAAATACATAA
*
9020530 TAAAAAATAAATACATAA
1 T-AAAATTAAATACATAA
9020548 -AAAATTAAA
1 TAAAATTAAA
9020557 ACAAAGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 9 0.39
17 9 0.39
18 5 0.22
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.26
Consensus pattern (17 bp):
TAAAATTAAATACATAA
Found at i:9023982 original size:26 final size:26
Alignment explanation
Indices: 9023947--9024102 Score: 112
Period size: 26 Copynumber: 6.3 Consensus size: 26
9023937 TGGCTATCCG
*
9023947 GAGC-TCCTGATTAATGGCTCTTCGT
1 GAGCTTCCTGATTAATGGCTCTTTGT
** *
9023972 GAGCTTCCTGATTAAAAGTTCTTTGT
1 GAGCTTCCTGATTAATGGCTCTTTGT
* *
9023998 GAACTTCCTGATT-ATGGCTC-TTAT
1 GAGCTTCCTGATTAATGGCTCTTTGT
* ****
9024022 GAGCTTCCTG-TTATATAGC-CCGAAT
1 GAGCTTCCTGATTA-ATGGCTCTTTGT
*
9024047 AAGCTTCCTGA-T-A-GGCTCTTTGT
1 GAGCTTCCTGATTAATGGCTCTTTGT
** *
9024070 GAGCTTCCCAATTAATGGCTTTTTGT
1 GAGCTTCCTGATTAATGGCTCTTTGT
9024096 GAGCTTC
1 GAGCTTC
9024103 ATATTATATG
Statistics
Matches: 99, Mismatches: 23, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
22 2 0.02
23 13 0.13
24 14 0.14
25 25 0.25
26 45 0.45
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (26 bp):
GAGCTTCCTGATTAATGGCTCTTTGT
Done.