Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 32 of 205
Found at i:9652915 original size:34 final size:34
Alignment explanation
Indices: 9652872--9652936 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
9652862 ATGCTGTATA
9652872 AATGAATTATGATTCGTTTGATGTTTAATTTAGT
1 AATGAATTATGATTCGTTTGATGTTTAATTTAGT
9652906 AATGAATTATGATTCGTTTGATGTTTAATTT
1 AATGAATTATGATTCGTTTGATGTTTAATTT
9652937 GTACATATGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.29, C:0.03, G:0.17, T:0.51
Consensus pattern (34 bp):
AATGAATTATGATTCGTTTGATGTTTAATTTAGT
Found at i:9653439 original size:32 final size:32
Alignment explanation
Indices: 9653393--9653462 Score: 92
Period size: 31 Copynumber: 2.3 Consensus size: 32
9653383 CCGATTGTTA
* *
9653393 TAAAAAAAT-ATA-AAAAATATTAATTAA-AT
1 TAAAAAAATGAAATAAAAATATTAAATAATAT
*
9653422 TACAAAAATGAAATAAAAATATTAAATAATAT
1 TAAAAAAATGAAATAAAAATATTAAATAATAT
9653454 TAAAAAAAT
1 TAAAAAAAT
9653463 TAAAATTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 8 0.24
30 2 0.06
31 14 0.41
32 10 0.29
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.29
Consensus pattern (32 bp):
TAAAAAAATGAAATAAAAATATTAAATAATAT
Found at i:9660966 original size:25 final size:25
Alignment explanation
Indices: 9660938--9660986 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
9660928 TTTAAAAATA
9660938 TTAAAAAAAA-TCTCTTTTAATTTTT
1 TTAAAAAAAACT-TCTTTTAATTTTT
* *
9660963 TTAAAAATAACTTTTTTTAATTTT
1 TTAAAAAAAACTTCTTTTAATTTT
9660987 AAAAATTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 20 0.95
26 1 0.05
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (25 bp):
TTAAAAAAAACTTCTTTTAATTTTT
Found at i:9671727 original size:21 final size:20
Alignment explanation
Indices: 9671703--9671741 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
9671693 TTTATATGAT
9671703 TTTTTTATTGTTACATTTTTA
1 TTTTTTATT-TTACATTTTTA
9671724 TTTTTTATTTTAC-TTTTT
1 TTTTTTATTTTACATTTTT
9671742 TTGTTAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 4 0.22
21 9 0.50
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.77
Consensus pattern (20 bp):
TTTTTTATTTTACATTTTTA
Found at i:9671743 original size:21 final size:21
Alignment explanation
Indices: 9671703--9671742 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
9671693 TTTATATGAT
9671703 TTTTTTATTGTTACATTTTTA
1 TTTTTTATTGTTACATTTTTA
*
9671724 TTTTTTATT-TTACTTTTTT
1 TTTTTTATTGTTACATTTTT
9671743 TGTTAAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.78
Consensus pattern (21 bp):
TTTTTTATTGTTACATTTTTA
Found at i:9673184 original size:19 final size:19
Alignment explanation
Indices: 9673160--9673211 Score: 52
Period size: 21 Copynumber: 2.6 Consensus size: 19
9673150 GCTTCAAGGG
*
9673160 TGTGTCACGACACCATGGT
1 TGTGTCACGACACCATGGC
*
9673179 TGTGTCGTACCATC-CCATGGC
1 TGTGTC--ACGA-CACCATGGC
9673200 TGTGTCACGACA
1 TGTGTCACGACA
9673212 TTGAAGGCAG
Statistics
Matches: 26, Mismatches: 3, Indels: 8
0.70 0.08 0.22
Matches are distributed among these distances:
18 1 0.04
19 9 0.35
21 15 0.58
22 1 0.04
ACGTcount: A:0.19, C:0.29, G:0.25, T:0.27
Consensus pattern (19 bp):
TGTGTCACGACACCATGGC
Found at i:9675594 original size:23 final size:22
Alignment explanation
Indices: 9675564--9675609 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 22
9675554 TTTTTTGCAC
*
9675564 AAAGTCATCATTAAGTAGGGAA
1 AAAGTCATCATTAAGTACGGAA
9675586 NAAAGTCATCATTAAGTACGGAA
1 -AAAGTCATCATTAAGTACGGAA
9675609 A
1 A
9675610 GAAGATCCCG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 1 0.05
23 21 0.95
ACGTcount: A:0.46, C:0.11, G:0.20, T:0.22
Consensus pattern (22 bp):
AAAGTCATCATTAAGTACGGAA
Found at i:9687212 original size:15 final size:15
Alignment explanation
Indices: 9687192--9687230 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
9687182 TGAATTTTAT
9687192 ATTTTCAATCTTCAA
1 ATTTTCAATCTTCAA
9687207 ATTTTCAAT-TTCAA
1 ATTTTCAATCTTCAA
*
9687221 ATTTTTAATC
1 ATTTTCAATC
9687231 CTTAATCCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.59
15 9 0.41
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.51
Consensus pattern (15 bp):
ATTTTCAATCTTCAA
Found at i:9687221 original size:14 final size:14
Alignment explanation
Indices: 9687177--9687225 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
9687167 TTCAATCCCC
* *
9687177 AATTTTGAATTTTA
1 AATTTTCAATTTCA
*
9687191 TATTTTCAATCTTCA
1 AATTTTCAAT-TTCA
9687206 AATTTTCAATTTCA
1 AATTTTCAATTTCA
9687220 AATTTT
1 AATTTT
9687226 TAATCCTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 18 0.60
15 12 0.40
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.55
Consensus pattern (14 bp):
AATTTTCAATTTCA
Found at i:9687408 original size:14 final size:16
Alignment explanation
Indices: 9687378--9687415 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 16
9687368 TGGTAAGAAA
9687378 ATTTATTAAATTATTT
1 ATTTATTAAATTATTT
9687394 ATTT-TTAAA-TATTT
1 ATTTATTAAATTATTT
*
9687408 AATTATTA
1 ATTTATTA
9687416 TGCTATTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 8 0.40
15 8 0.40
16 4 0.20
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTTATTAAATTATTT
Found at i:9688181 original size:18 final size:18
Alignment explanation
Indices: 9688111--9688182 Score: 56
Period size: 18 Copynumber: 3.7 Consensus size: 18
9688101 GTTCATTTGT
9688111 TAATTTTAAAAAGTCTCAAAA
1 TAATTTT-AAAA-T-TCAAAA
* *
9688132 TAAATTTCAAAAATTTAAAA
1 T-AATTT-TAAAATTCAAAA
*
9688152 TAATTTTTAAATTCAAAA
1 TAATTTTAAAATTCAAAA
9688170 T-ATTTATAAAATT
1 TAATTT-TAAAATT
9688183 GTCAAAAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
17 4 0.10
18 16 0.38
19 5 0.12
20 6 0.14
21 2 0.05
22 9 0.21
ACGTcount: A:0.53, C:0.06, G:0.01, T:0.40
Consensus pattern (18 bp):
TAATTTTAAAATTCAAAA
Found at i:9700720 original size:33 final size:34
Alignment explanation
Indices: 9700669--9700742 Score: 132
Period size: 34 Copynumber: 2.2 Consensus size: 34
9700659 ATGAAAGAAC
*
9700669 TTTAA-TTTTAACTAAAAAAATTTAAAATTTTAT
1 TTTAATTTTTAACTAAAAAAAGTTAAAATTTTAT
9700702 TTTAATTTTTAACTAAAAAAAGTTAAAATTTTAT
1 TTTAATTTTTAACTAAAAAAAGTTAAAATTTTAT
9700736 TTTAATT
1 TTTAATT
9700743 AACATTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
33 5 0.13
34 34 0.87
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (34 bp):
TTTAATTTTTAACTAAAAAAAGTTAAAATTTTAT
Found at i:9701011 original size:20 final size:21
Alignment explanation
Indices: 9700987--9701050 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 21
9700977 AAAAAATTTC
9700987 AAAATATTTTTTATAATTTTT
1 AAAATATTTTTTATAATTTTT
* * * *
9701008 -AAATAATGTTAATGATTTTT
1 AAAATATTTTTTATAATTTTT
*
9701028 AAAAATATTTTTTAAAAATTTTT
1 -AAAATATTTTTT-ATAATTTTT
9701051 TGAAATTTTA
Statistics
Matches: 31, Mismatches: 9, Indels: 4
0.70 0.20 0.09
Matches are distributed among these distances:
20 16 0.52
22 8 0.26
23 7 0.23
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (21 bp):
AAAATATTTTTTATAATTTTT
Found at i:9701879 original size:26 final size:26
Alignment explanation
Indices: 9701843--9701894 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
9701833 AAATCCATGA
9701843 TATGTTTAAATATGATAATTGGTGTT
1 TATGTTTAAATATGATAATTGGTGTT
9701869 TATGTTTAAATATGATAATTGGTGTT
1 TATGTTTAAATATGATAATTGGTGTT
9701895 GTTTTATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (26 bp):
TATGTTTAAATATGATAATTGGTGTT
Found at i:9705767 original size:30 final size:31
Alignment explanation
Indices: 9705728--9705787 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
9705718 GGAGGTGGGA
*
9705728 TGGGAAGGGAATAAAAGTTTTAGG-GGAAAAG
1 TGGGAAGGGAATAAAAATTTT-GGAGGAAAAG
*
9705759 TGGG-AGGGAGTAAAAATTTTGGAGGAAAA
1 TGGGAAGGGAATAAAAATTTTGGAGGAAAA
9705788 TAAAAAGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 2 0.08
30 20 0.77
31 4 0.15
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTGGAGGAAAAG
Found at i:9706010 original size:9 final size:9
Alignment explanation
Indices: 9705996--9706032 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
9705986 TATAGTTTGA
9705996 TATTCGAAT
1 TATTCGAAT
9706005 TATTCGAAT
1 TATTCGAAT
*
9706014 TATTCGAGT
1 TATTCGAAT
9706023 TATTCGAAT
1 TATTCGAAT
9706032 T
1 T
9706033 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:9706655 original size:11 final size:11
Alignment explanation
Indices: 9706629--9706664 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
9706619 AACAAATCCT
9706629 CTCTCAAATTTC
1 CTCTC-AATTTC
*
9706641 CTCTCAATATC
1 CTCTCAATTTC
9706652 CTCTCAATTTC
1 CTCTCAATTTC
9706663 CT
1 CT
9706665 TCCAAATTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 17 0.77
12 5 0.23
ACGTcount: A:0.22, C:0.36, G:0.00, T:0.42
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:9707922 original size:7 final size:7
Alignment explanation
Indices: 9707910--9707942 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
9707900 TAGTCGATTG
9707910 GTATTTA
1 GTATTTA
9707917 GTATTTA
1 GTATTTA
9707924 GTATTTA
1 GTATTTA
9707931 GTATTTA
1 GTATTTA
9707938 GTATT
1 GTATT
9707943 ATGTATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:9709160 original size:22 final size:22
Alignment explanation
Indices: 9709114--9709370 Score: 78
Period size: 22 Copynumber: 12.1 Consensus size: 22
9709104 TAAAAACTCT
* * *
9709114 AAACCCTAACCCTT-AACTTAA
1 AAACCATAAACCTTAAACCTAA
*
9709135 AAACC-TCAAATCTTAAACCTAA
1 AAACCAT-AAACCTTAAACCTAA
*
9709157 AAACCATAAACCTTAAACTTAA
1 AAACCATAAACCTTAAACCTAA
* **
9709179 AAACCCTAAACCCCAAAACCT--
1 AAACCATAAA-CCTTAAACCTAA
* ** * *
9709200 TAACTTTAAAACCATAACCCT--
1 AAACCAT-AAACCTTAAACCTAA
* * *
9709221 AATCC-T-AACCCTAAACTTAA
1 AAACCATAAACCTTAAACCTAA
*
9709241 AAACCCCT-AACCTTAAACCT--
1 AAA-CCATAAACCTTAAACCTAA
*
9709261 AAACCCT-AACTCTT-AACCTAA
1 AAACCATAAAC-CTTAAACCTAA
* *
9709282 AAACCTTAAACCTTAAACTTAA
1 AAACCATAAACCTTAAACCTAA
* *
9709304 AAACCCTAATA-CTT-AA-CTTA
1 AAACCATAA-ACCTTAAACCTAA
** * *
9709324 AAACCCCAAACCCTAAACCTTA
1 AAACCATAAACCTTAAACCTAA
* * * *
9709346 AAACCTTAAATCATAAACTTAA
1 AAACCATAAACCTTAAACCTAA
9709368 AAA
1 AAA
9709371 TTGTAAACCC
Statistics
Matches: 181, Mismatches: 37, Indels: 35
0.72 0.15 0.14
Matches are distributed among these distances:
18 9 0.05
19 13 0.07
20 22 0.12
21 38 0.21
22 90 0.50
23 9 0.05
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (22 bp):
AAACCATAAACCTTAAACCTAA
Found at i:9709262 original size:34 final size:34
Alignment explanation
Indices: 9709180--9709269 Score: 92
Period size: 35 Copynumber: 2.6 Consensus size: 34
9709170 TAAACTTAAA
* * * *
9709180 AACCCTAAACCCCAAAACCTTAACTTTAAAACCAT
1 AACCCTAAA-CCTAAACCCTAAACTTAAAAACCAT
* *
9709215 AACCCTAATCCT-AACCCTAAACTTAAAAACCCCT
1 AACCCTAAACCTAAACCCTAAACTTAAAAA-CCAT
*
9709249 AACCTTAAACCTAAACCCTAA
1 AACCCTAAACCTAAACCCTAA
9709270 CTCTTAACCT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
33 14 0.31
34 15 0.33
35 16 0.36
ACGTcount: A:0.44, C:0.36, G:0.00, T:0.20
Consensus pattern (34 bp):
AACCCTAAACCTAAACCCTAAACTTAAAAACCAT
Found at i:9709326 original size:43 final size:43
Alignment explanation
Indices: 9709224--9709370 Score: 126
Period size: 41 Copynumber: 3.5 Consensus size: 43
9709214 TAACCCTAAT
* * *
9709224 CCTAACCCTAAACTTAAAAACCCCT-AACCTTAAACCT--AAAC
1 CCTAACTCTTAACTTAAAAA-CCCTAAACCTTAAACTTAAAAAC
* *
9709265 CCTAACTCTTAACCTAAAAACCTTAAACCTTAAACTTAAAAAC
1 CCTAACTCTTAACTTAAAAACCCTAAACCTTAAACTTAAAAAC
* *
9709308 CCTAA-TACTTAACTT-AAAACCCCAAACCCTAAACCTT-AAAAC
1 CCTAACT-CTTAACTTAAAAACCCTAAACCTTAAA-CTTAAAAAC
* * *
9709350 CTTAAATCATAAACTTAAAAA
1 CCTAACTC-TTAACTTAAAAA
9709371 TTGTAAACCC
Statistics
Matches: 87, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
40 3 0.03
41 28 0.32
42 26 0.30
43 26 0.30
44 4 0.05
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (43 bp):
CCTAACTCTTAACTTAAAAACCCTAAACCTTAAACTTAAAAAC
Found at i:9709368 original size:21 final size:21
Alignment explanation
Indices: 9709227--9709369 Score: 80
Period size: 22 Copynumber: 6.8 Consensus size: 21
9709217 CCCTAATCCT
*
9709227 AACCCTAAACTTAAAAACCCCT-
1 AACCATAAACTT-AAAA-CCCTA
* *
9709249 AACCTTAAACCT-AAACCCT-
1 AACCATAAACTTAAAACCCTA
* * * *
9709268 AACTCTTAACCTAAAAACCTTA
1 AAC-CATAAACTTAAAACCCTA
*
9709290 AACCTTAAACTTAAAAACCCTA
1 AACCATAAACTT-AAAACCCTA
* *
9709312 ATA-C-TTAACTTAAAACCCCA
1 A-ACCATAAACTTAAAACCCTA
* *
9709332 AACCCTAAACCTTAAAACCTTA
1 AACCATAAA-CTTAAAACCCTA
*
9709354 AATCATAAACTTAAAA
1 AACCATAAACTTAAAA
9709370 ATTGTAAACC
Statistics
Matches: 97, Mismatches: 16, Indels: 17
0.75 0.12 0.13
Matches are distributed among these distances:
19 8 0.08
20 19 0.20
21 29 0.30
22 40 0.41
23 1 0.01
ACGTcount: A:0.48, C:0.29, G:0.00, T:0.23
Consensus pattern (21 bp):
AACCATAAACTTAAAACCCTA
Found at i:9709368 original size:64 final size:63
Alignment explanation
Indices: 9709227--9709370 Score: 166
Period size: 64 Copynumber: 2.3 Consensus size: 63
9709217 CCCTAATCCT
* * * * *
9709227 AACCCTAAACTTAAAAACCCCTAACCTTAAACCTAAACCCTAACTCTTAACCTAAAAACCTTA
1 AACCATAAACTTAAAAACCCCTAAACTTAAACCTAAACCCAAACCCTAAACCTAAAAACCTTA
* * *
9709290 AACCTTAAACTTAAAAA-CCCTAATACTT-AACTTAAAACCCCAAACCCTAAACCTTAAAACCTT
1 AACCATAAACTTAAAAACCCCTAA-ACTTAAACCT-AAA-CCCAAACCCTAAACCTAAAAACCTT
9709353 A
63 A
*
9709354 AATCATAAACTTAAAAA
1 AACCATAAACTTAAAAA
9709371 TTGTAAACCC
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
62 10 0.14
63 22 0.32
64 37 0.54
ACGTcount: A:0.48, C:0.29, G:0.00, T:0.23
Consensus pattern (63 bp):
AACCATAAACTTAAAAACCCCTAAACTTAAACCTAAACCCAAACCCTAAACCTAAAAACCTTA
Found at i:9709384 original size:22 final size:22
Alignment explanation
Indices: 9709331--9709384 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
9709321 TTAAAACCCC
*
9709331 AAACCCTAAACCTTAAAACCTT
1 AAACCCTAAACCTTAAAAACTT
* * *
9709353 AAATCATAAA-CTTAAAAATTGT
1 AAACCCTAAACCTTAAAAACT-T
9709375 AAACCCTAAA
1 AAACCCTAAA
9709385 ACTTTAACTT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.52, C:0.22, G:0.02, T:0.24
Consensus pattern (22 bp):
AAACCCTAAACCTTAAAAACTT
Found at i:9709458 original size:34 final size:35
Alignment explanation
Indices: 9709388--9709590 Score: 135
Period size: 34 Copynumber: 5.4 Consensus size: 35
9709378 CCCTAAAACT
* * *
9709388 TTAACTTTAAAACCCTAACCT--TAATCTTAACCC
1 TTAACTTAAAAACCCTAACCTAAAAATCCTAACCC
*
9709421 TTAACTTAAAAACCCTAA-TTAAAAA-CACTAACCC
1 TTAACTTAAAAACCCTAACCTAAAAATC-CTAACCC
*
9709455 TTAACTTAAAAACCCTAAACCTAAAAATCCTAAACC
1 TTAACTTAAAAACCCT-AACCTAAAAATCCTAACCC
* *
9709491 TTAAACTTTAAAACCCTAAACCATAAACCTAAAACCTAAAACCC
1 TT-AACTTAAAAACCCT-AACC-T-AA---AAATCCT--AACCC
* *
9709535 TAAACTTAAAAACCCATAACCCTAAACCTAAAACCCTAACCC
1 TTAACTTAAAAACCC-TAA-CCT--A---AAAATCCTAACCC
9709577 TTAACTTAAAAACC
1 TTAACTTAAAAACC
9709591 ATAAACCCTA
Statistics
Matches: 137, Mismatches: 13, Indels: 31
0.76 0.07 0.17
Matches are distributed among these distances:
32 1 0.01
33 18 0.13
34 24 0.18
35 2 0.01
36 14 0.10
37 19 0.14
38 1 0.01
39 2 0.01
42 24 0.18
43 15 0.11
44 16 0.12
47 1 0.01
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (35 bp):
TTAACTTAAAAACCCTAACCTAAAAATCCTAACCC
Found at i:9709465 original size:21 final size:21
Alignment explanation
Indices: 9709431--9709599 Score: 99
Period size: 21 Copynumber: 8.3 Consensus size: 21
9709421 TTAACTTAAA
*
9709431 AACCC-TAA-TTAAAAACACT
1 AACCCTTAACTTAAAAACCCT
9709450 AACCCTTAACTTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
* *
9709471 -A-----AACCTAAAAATCCT
1 AACCCTTAACTTAAAAACCCT
* *
9709486 AAACCTTAAACTTTAAAACCCT
1 AACCCTT-AACTTAAAAACCCT
* * *
9709508 AAACCATAAACCT-AAAA-CCT
1 -AACCCTTAACTTAAAAACCCT
*
9709528 AAAACCCTAAACTTAAAAACCCAT
1 --AACCCTTAACTTAAAAACCC-T
* *
9709552 AACCCTAAACCT-AAAACCCT
1 AACCCTTAACTTAAAAACCCT
*
9709572 AACCCTTAACTTAAAAACCAT
1 AACCCTTAACTTAAAAACCCT
9709593 AAACCCT
1 -AACCCT
9709600 AACCCTTAAC
Statistics
Matches: 118, Mismatches: 16, Indels: 29
0.72 0.10 0.18
Matches are distributed among these distances:
15 12 0.10
16 1 0.01
19 5 0.04
20 18 0.15
21 39 0.33
22 36 0.31
23 6 0.05
24 1 0.01
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (21 bp):
AACCCTTAACTTAAAAACCCT
Found at i:9709474 original size:7 final size:7
Alignment explanation
Indices: 9709464--9709623 Score: 57
Period size: 7 Copynumber: 22.4 Consensus size: 7
9709454 CTTAACTTAA
9709464 AAACCCT
1 AAACCCT
9709471 AAA-CCT
1 AAACCCT
*
9709477 AAAAATCCT
1 --AAACCCT
*
9709486 AAACCTT
1 AAACCCT
**
9709493 AAACTTT
1 AAACCCT
9709500 AAAACCCT
1 -AAACCCT
*
9709508 AAACCAT
1 AAACCCT
9709515 AAA-CCT
1 AAACCCT
*
9709521 AAAACCT
1 AAACCCT
9709528 AAAACCCT
1 -AAACCCT
*
9709536 AAA-CTT
1 AAACCCT
9709542 AAAAACCC-
1 --AAACCCT
9709550 ATAACCCT
1 A-AACCCT
9709558 AAA-CCT
1 AAACCCT
9709564 AAAACCCT
1 -AAACCCT
9709572 -AACCCT
1 AAACCCT
* *
9709578 TAA-CTT
1 AAACCCT
*
9709584 AAAAACCAT
1 --AAACCCT
9709593 AAACCCT
1 AAACCCT
9709600 -AACCCT
1 AAACCCT
* *
9709606 TAACTTCT
1 AAAC-CCT
9709614 AAACCCT
1 AAACCCT
9709621 AAA
1 AAA
9709624 ACCTTAAATT
Statistics
Matches: 117, Mismatches: 17, Indels: 38
0.68 0.10 0.22
Matches are distributed among these distances:
6 28 0.24
7 55 0.47
8 28 0.24
9 6 0.05
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (7 bp):
AAACCCT
Found at i:9709475 original size:22 final size:22
Alignment explanation
Indices: 9709464--9709601 Score: 142
Period size: 22 Copynumber: 6.4 Consensus size: 22
9709454 CTTAACTTAA
* *
9709464 AAACCCTAAACCTAAAAATCCT
1 AAACCCTAAACTTAAAAACCCT
* *
9709486 AAACCTTAAACTTTAAAACCCT
1 AAACCCTAAACTTAAAAACCCT
* *
9709508 AAACCATAAACCT-AAAA-CCT
1 AAACCCTAAACTTAAAAACCCT
9709528 AAAACCCTAAACTTAAAAACCC-
1 -AAACCCTAAACTTAAAAACCCT
*
9709550 ATAACCCTAAACCT-AAAACCCT
1 A-AACCCTAAACTTAAAAACCCT
* *
9709572 -AACCCTTAACTTAAAAACCAT
1 AAACCCTAAACTTAAAAACCCT
9709593 AAACCCTAA
1 AAACCCTAA
9709602 CCCTTAACTT
Statistics
Matches: 96, Mismatches: 13, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
20 13 0.14
21 30 0.31
22 51 0.53
23 2 0.02
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (22 bp):
AAACCCTAAACTTAAAAACCCT
Found at i:9709479 original size:15 final size:15
Alignment explanation
Indices: 9709450--9709560 Score: 66
Period size: 15 Copynumber: 7.0 Consensus size: 15
9709440 TAAAAACACT
* *
9709450 AACCCTTAACTTAAA
1 AACCCTAAACCTAAA
9709465 AACCCTAAACCTAAA
1 AACCCTAAACCTAAA
*
9709480 AATCCTAAACCTTAAACTTTAA
1 AACCCTAAACC-T--A----AA
*
9709502 AACCCTAAACC-ATA
1 AACCCTAAACCTAAA
9709516 AA-CCTAAAACCT-AA
1 AACCCT-AAACCTAAA
*
9709530 AACCCTAAACTTAAA
1 AACCCTAAACCTAAA
*
9709545 AACCCATAACCCTAAA
1 AACCC-TAAACCTAAA
9709561 CCTAAAACCC
Statistics
Matches: 75, Mismatches: 9, Indels: 23
0.70 0.08 0.21
Matches are distributed among these distances:
13 3 0.04
14 16 0.21
15 33 0.44
16 9 0.12
18 2 0.03
22 12 0.16
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (15 bp):
AACCCTAAACCTAAA
Found at i:9709532 original size:28 final size:29
Alignment explanation
Indices: 9709485--9709539 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
9709475 CTAAAAATCC
* *
9709485 TAAACCTTAAACTTTAAAACCCTAAACCA
1 TAAACCTAAAACTCTAAAACCCTAAACCA
9709514 TAAACCTAAAAC-CTAAAACCCTAAAC
1 TAAACCTAAAACTCTAAAACCCTAAAC
9709540 TTAAAAACCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.20
Consensus pattern (29 bp):
TAAACCTAAAACTCTAAAACCCTAAACCA
Found at i:9709547 original size:43 final size:43
Alignment explanation
Indices: 9709464--9709623 Score: 175
Period size: 43 Copynumber: 3.7 Consensus size: 43
9709454 CTTAACTTAA
* * *
9709464 AAACCCTAAACCTAAAAATCCTAAACCTTAAACTTTAAAACCCT
1 AAACCCTAAACCT-AAAACCCTAAACCCTAAACTTAAAAACCCT
*
9709508 AAACCATAAACCTAAAA-CCTAAAACCCTAAACTTAAAAACCC-
1 AAACCCTAAACCTAAAACCCT-AAACCCTAAACTTAAAAACCCT
* *
9709550 ATAACCCTAAACCTAAAACCCT-AACCCTTAACTTAAAAACCAT
1 A-AACCCTAAACCTAAAACCCTAAACCCTAAACTTAAAAACCCT
* * *
9709593 AAACCCTAACCCT-TAACTTCTAAACCCTAAA
1 AAACCCTAAACCTAAAAC-CCTAAACCCTAAA
9709624 ACCTTAAATT
Statistics
Matches: 100, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
41 3 0.03
42 35 0.35
43 47 0.47
44 15 0.15
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (43 bp):
AAACCCTAAACCTAAAACCCTAAACCCTAAACTTAAAAACCCT
Found at i:9709589 original size:28 final size:29
Alignment explanation
Indices: 9709558--9709626 Score: 97
Period size: 28 Copynumber: 2.4 Consensus size: 29
9709548 CCATAACCCT
9709558 AAACCTAAAACCCTAACCCTTAACTT-AA
1 AAACCTAAAACCCTAACCCTTAACTTCAA
*
9709586 AAACC-ATAAACCCTAACCCTTAACTTCTA
1 AAACCTA-AAACCCTAACCCTTAACTTCAA
*
9709615 AACCCTAAAACC
1 AAACCTAAAACC
9709627 TTAAATTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
27 1 0.03
28 24 0.67
29 10 0.28
30 1 0.03
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.20
Consensus pattern (29 bp):
AAACCTAAAACCCTAACCCTTAACTTCAA
Found at i:9709616 original size:21 final size:20
Alignment explanation
Indices: 9709592--9709651 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 20
9709582 TTAAAAACCA
*
9709592 TAAACCCTAACCCTTAACTT
1 TAAACCCTAACCCTTAAATT
*
9709612 CTAAACCCTAAAACCTTAAATT
1 -TAAACCCT-AACCCTTAAATT
*
9709634 TAAAACCTTAACCCTTAA
1 T-AAACCCTAACCCTTAA
9709652 GTTAAATATA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 17 0.52
22 16 0.48
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (20 bp):
TAAACCCTAACCCTTAAATT
Found at i:9713035 original size:125 final size:124
Alignment explanation
Indices: 9712808--9713244 Score: 644
Period size: 125 Copynumber: 3.5 Consensus size: 124
9712798 CAAACATGCT
*
9712808 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGGTA
1 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCT-GTA
* *
9712873 GAAGCGATTTTATACTATTTGCTCAGAAACGTTAACTCGAAATAATTTCTTCCAGGACCA
65 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCA
9712933 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTAGTA
1 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCT-GTA
*
9712998 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTTCAGGACCA
65 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCA
* * * * *
9713058 ACTGTAGCAAAAGCGCGTCCAGGAGGGCGCAATTTCACAAATTCTTCGCATATAGCATCCTGCTT
1 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTG-TA
* * *
9713123 GAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAAGACCT
65 GAAGCG-ATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCA
* * * * * * *
9713183 ACTGTAGCAAAAGCGCGTACAC-ATGGGCGCGACTGCAAAAATCCTTCTGATAAATCATCCTG
1 ACTGTAGCAAAAGCGCGTCCACGA-GGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTG
9713245 CTTTGATTTT
Statistics
Matches: 284, Mismatches: 25, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
124 2 0.01
125 241 0.85
126 41 0.14
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (124 bp):
ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGTAG
AAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCA
Found at i:9713866 original size:28 final size:28
Alignment explanation
Indices: 9713833--9713899 Score: 77
Period size: 28 Copynumber: 2.4 Consensus size: 28
9713823 TTTATTTTTT
9713833 ATATAATATTA-TTTAAGA-TAAT-ATAAA
1 ATATAA-ATTATTTTAA-ATTAATCATAAA
9713860 ATTATAAAATTATTTTAAATTAATCATAAA
1 A-TAT-AAATTATTTTAAATTAATCATAAA
9713890 ATATAAATTA
1 ATATAAATTA
9713900 AGTAATTTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
27 1 0.03
28 14 0.40
29 14 0.40
30 6 0.17
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (28 bp):
ATATAAATTATTTTAAATTAATCATAAA
Found at i:9713894 original size:29 final size:27
Alignment explanation
Indices: 9713833--9713896 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 27
9713823 TTTATTTTTT
*
9713833 ATATAATATTATTTAAGATAATATAAA
1 ATATAAAATTATTTAAGATAATATAAA
9713860 ATTATAAAATTATTTTAA-ATTAATCATAAA
1 A-TATAAAATTA-TTTAAGA-TAAT-ATAAA
9713890 ATATAAA
1 ATATAAA
9713897 TTAAGTAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
27 1 0.03
28 10 0.31
29 15 0.47
30 6 0.19
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (27 bp):
ATATAAAATTATTTAAGATAATATAAA
Found at i:9714262 original size:6 final size:6
Alignment explanation
Indices: 9714251--9714323 Score: 78
Period size: 6 Copynumber: 12.3 Consensus size: 6
9714241 TAGATAATAT
*
9714251 TATAAA TATAAA TATAAA TA-AATA TATAAA AATAAA TATAAA TAT-AA
1 TATAAA TATAAA TATAAA TATAA-A TATAAA TATAAA TATAAA TATAAA
* * * *
9714298 TATAAT TACAAA TACAAA TCTAAA TA
1 TATAAA TATAAA TATAAA TATAAA TA
9714324 ATTATAAAGT
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
5 7 0.12
6 47 0.84
7 2 0.04
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (6 bp):
TATAAA
Found at i:9714278 original size:24 final size:25
Alignment explanation
Indices: 9714244--9714301 Score: 91
Period size: 24 Copynumber: 2.3 Consensus size: 25
9714234 TTTAAAATAG
*
9714244 ATAATATTATAAATATAAATATAAAT
1 ATAATA-TATAAAAATAAATATAAAT
9714270 A-AATATATAAAAATAAATATAAAT
1 ATAATATATAAAAATAAATATAAAT
9714294 ATAATATA
1 ATAATATA
9714302 ATTACAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 19 0.63
25 10 0.33
26 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (25 bp):
ATAATATATAAAAATAAATATAAAT
Found at i:9723118 original size:23 final size:22
Alignment explanation
Indices: 9723053--9723119 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
9723043 TGATATTTTA
*
9723053 ATTATTTTTATATGTGAAATAT
1 ATTATATTTATATGTGAAATAT
* * *
9723075 TTTA-ATTAATTATTTGAAATAT
1 ATTATATTTA-TATGTGAAATAT
*
9723097 CATTATGTTTATATGTGAAATAT
1 -ATTATATTTATATGTGAAATAT
9723120 TTTAAATACA
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
21 3 0.09
22 14 0.41
23 14 0.41
24 3 0.09
ACGTcount: A:0.37, C:0.01, G:0.09, T:0.52
Consensus pattern (22 bp):
ATTATATTTATATGTGAAATAT
Found at i:9723286 original size:13 final size:14
Alignment explanation
Indices: 9723265--9723297 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
9723255 AATAAAATAT
*
9723265 ATATTAATT-AAAA
1 ATATAAATTAAAAA
9723278 ATATAAATTAAAAA
1 ATATAAATTAAAAA
9723292 ATATAA
1 ATATAA
9723298 TATTTTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
ATATAAATTAAAAA
Found at i:9727916 original size:41 final size:41
Alignment explanation
Indices: 9727854--9727932 Score: 149
Period size: 41 Copynumber: 1.9 Consensus size: 41
9727844 CCTAATTGAG
*
9727854 AAATAATTCCCTTATTTTAATAAACTACTAAAAGATAAGGA
1 AAATAATTCCCTTATTCTAATAAACTACTAAAAGATAAGGA
9727895 AAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
1 AAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
9727933 AATAACATAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.49, C:0.14, G:0.05, T:0.32
Consensus pattern (41 bp):
AAATAATTCCCTTATTCTAATAAACTACTAAAAGATAAGGA
Found at i:9727994 original size:19 final size:19
Alignment explanation
Indices: 9727970--9728010 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
9727960 TGATTTATTC
9727970 TAAGATTTATATACCTAAA
1 TAAGATTTATATACCTAAA
*
9727989 TAAGATTTATCTACCTAAA
1 TAAGATTTATATACCTAAA
9728008 TAA
1 TAA
9728011 CTTTAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.46, C:0.12, G:0.05, T:0.37
Consensus pattern (19 bp):
TAAGATTTATATACCTAAA
Found at i:9730957 original size:170 final size:169
Alignment explanation
Indices: 9730672--9731010 Score: 615
Period size: 170 Copynumber: 2.0 Consensus size: 169
9730662 ACATTTTTCT
9730672 GAAAAAGTTGAGACTCTCGAAGGTCCCCAAACATCACTATGAATTAATGAAAAAAGTTTAGAAGC
1 GAAAAAGTTGAGACTCTCGAAGGTCCCCAAACATCACTATGAATTAATGAAAAAAGTTTAGAAGC
*
9730737 TTTATATTTTTGAGGTGAGAAAAATGACCGATAATGTTTAGCCAATTCACAAAATTCACAGTGAT
66 TTTATATTTTTGAGGTGAGAAAAATAACCGATAATGTTTAGCCAATTCACAAAATTCACAGTGAT
9730802 ATGAAGAAGGACTTTTATTTTTAAACAAATCAGGTAACA
131 ATGAAGAAGGACTTTTATTTTTAAACAAATCAGGTAACA
9730841 GAAAAAGTTGAGACTCTCGAAGGTCCCCAAACATCACTATGAATTAATGAAAAAAAGTTTAGAAG
1 GAAAAAGTTGAGACTCTCGAAGGTCCCCAAACATCACTATGAATTAATG-AAAAAAGTTTAGAAG
* *
9730906 CTTTATATTTTTGAGGTGAGAAGAATAACCGATGATGTTTAGCCAATTCACAAAATTCACAGTGA
65 CTTTATATTTTTGAGGTGAGAAAAATAACCGATAATGTTTAGCCAATTCACAAAATTCACAGTGA
* * *
9730971 TATGAAGAAGGACTTTTATTTTTAAATAGATCGGGTAACA
130 TATGAAGAAGGACTTTTATTTTTAAACAAATCAGGTAACA
9731011 AATATCTTAA
Statistics
Matches: 163, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
169 49 0.30
170 114 0.70
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (169 bp):
GAAAAAGTTGAGACTCTCGAAGGTCCCCAAACATCACTATGAATTAATGAAAAAAGTTTAGAAGC
TTTATATTTTTGAGGTGAGAAAAATAACCGATAATGTTTAGCCAATTCACAAAATTCACAGTGAT
ATGAAGAAGGACTTTTATTTTTAAACAAATCAGGTAACA
Found at i:9731443 original size:32 final size:32
Alignment explanation
Indices: 9731397--9731466 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
9731387 CTTGCACAAG
9731397 GTGAGTAAGTTGAAAAAAATAACTACTAGTTAT
1 GTGA-TAAGTTGAAAAAAATAACTACTAGTTAT
9731430 GTGATAAGTTGAAAAAAATAACTACTAGTTAT
1 GTGATAAGTTGAAAAAAATAACTACTAGTTAT
9731462 GTGAT
1 GTGAT
9731467 CACTAGCTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 33 0.89
33 4 0.11
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (32 bp):
GTGATAAGTTGAAAAAAATAACTACTAGTTAT
Found at i:9732005 original size:19 final size:19
Alignment explanation
Indices: 9731981--9732021 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
9731971 TGATTTCTTC
9731981 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
9732000 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
9732019 TAA
1 TAA
9732022 CTTTAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.37
Consensus pattern (19 bp):
TAAGATTTATCTACCTAAA
Found at i:9737800 original size:3 final size:3
Alignment explanation
Indices: 9737792--9737822 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
9737782 CTCGCTCTCC
9737792 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
9737823 TCTTTCTCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:9737861 original size:31 final size:31
Alignment explanation
Indices: 9737823--9737886 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
9737813 TATTATTATT
*
9737823 TCTTTCTCCTGCTTCCGTTTTTTTCTTCCTC
1 TCTTTCTCCTCCTTCCGTTTTTTTCTTCCTC
9737854 TCTTTCTCCTCCTTCCGTTTTTTTCTTCCTC
1 TCTTTCTCCTCCTTCCGTTTTTTTCTTCCTC
9737885 TC
1 TC
9737887 CCCTCTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.00, C:0.38, G:0.05, T:0.58
Consensus pattern (31 bp):
TCTTTCTCCTCCTTCCGTTTTTTTCTTCCTC
Found at i:9744044 original size:21 final size:21
Alignment explanation
Indices: 9744018--9744057 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
9744008 TGTACTATTT
9744018 TTTGAACTAGAGCCAATTCTA
1 TTTGAACTAGAGCCAATTCTA
9744039 TTTGAACTAGAGCCAATTC
1 TTTGAACTAGAGCCAATTC
9744058 CAACTGAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (21 bp):
TTTGAACTAGAGCCAATTCTA
Found at i:9744065 original size:21 final size:21
Alignment explanation
Indices: 9744020--9744066 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
9744010 TACTATTTTT
* **
9744020 TGAACTAGAGCCAATTCTATT
1 TGAACTAGAGCCAATTCCAAC
9744041 TGAACTAGAGCCAATTCCAAC
1 TGAACTAGAGCCAATTCCAAC
9744062 TGAAC
1 TGAAC
9744067 CAGAATATGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (21 bp):
TGAACTAGAGCCAATTCCAAC
Found at i:9746305 original size:18 final size:18
Alignment explanation
Indices: 9746282--9746321 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
9746272 TATAATTTAA
*
9746282 AAAAATA-TATAATACATC
1 AAAAATACTA-AAAACATC
9746300 AAAAATACTAAAAACATC
1 AAAAATACTAAAAACATC
9746318 AAAA
1 AAAA
9746322 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATACTAAAAACATC
Found at i:9747161 original size:11 final size:11
Alignment explanation
Indices: 9747130--9747165 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
9747120 TGAAAAATTA
*
9747130 AGAGAGAATTG
1 AGAGAGATTTG
*
9747141 AGAGAAATTTG
1 AGAGAGATTTG
9747152 AGAGAGATTTG
1 AGAGAGATTTG
9747163 AGA
1 AGA
9747166 ATGTGTGAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.22
Consensus pattern (11 bp):
AGAGAGATTTG
Found at i:9754990 original size:23 final size:23
Alignment explanation
Indices: 9754964--9755009 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
9754954 AAAAAATTTA
*
9754964 AGATGCCTGATTTGTGTTTATTG
1 AGATGCCTGATTTGGGTTTATTG
**
9754987 AGATGTTTGATTTGGGTTTATTG
1 AGATGCCTGATTTGGGTTTATTG
9755010 CATTACGTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.17, C:0.04, G:0.28, T:0.50
Consensus pattern (23 bp):
AGATGCCTGATTTGGGTTTATTG
Found at i:9755763 original size:12 final size:12
Alignment explanation
Indices: 9755746--9755770 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9755736 ATATTAGAAC
9755746 AATAAAGAAGAT
1 AATAAAGAAGAT
9755758 AATAAAGAAGAT
1 AATAAAGAAGAT
9755770 A
1 A
9755771 GATGAAAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (12 bp):
AATAAAGAAGAT
Found at i:9756134 original size:20 final size:20
Alignment explanation
Indices: 9756091--9756134 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
9756081 GTTTTAAACT
9756091 AAAC-TTTTTTATTAACATA
1 AAACTTTTTTTATTAACATA
* *
9756110 TAACTTTTTTTATTAACTTA
1 AAACTTTTTTTATTAACATA
9756130 AAACT
1 AAACT
9756135 CCTAAATAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (20 bp):
AAACTTTTTTTATTAACATA
Found at i:9756570 original size:16 final size:16
Alignment explanation
Indices: 9756545--9756585 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
9756535 AAAGTCCAAA
9756545 AAAAATATATATTTAAT
1 AAAAA-ATATATTTAAT
*
9756562 AAAAAATATATTTGAT
1 AAAAAATATATTTAAT
*
9756578 TAAAAATA
1 AAAAAATA
9756586 AAAATAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 17 0.77
17 5 0.23
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (16 bp):
AAAAAATATATTTAAT
Found at i:9756583 original size:18 final size:19
Alignment explanation
Indices: 9756543--9756583 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
9756533 TAAAAGTCCA
*
9756543 AAAAAAATATATATTTAAT
1 AAAAAAATATATATTGAAT
*
9756562 -AAAAAATATAT-TTGATT
1 AAAAAAATATATATTGAAT
9756579 AAAAA
1 AAAAA
9756584 TAAAAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (19 bp):
AAAAAAATATATATTGAAT
Found at i:9756589 original size:42 final size:37
Alignment explanation
Indices: 9756487--9756589 Score: 93
Period size: 42 Copynumber: 2.6 Consensus size: 37
9756477 GGCCCGACCC
9756487 ATATTTGATTAAAAAT--AAAAATATATATTTAATAT
1 ATATTTGATTAAAAATAAAAAAATATATATTTAATAT
*
9756522 ATAGTTTGGATTAAAAGTCCAAAAAAAATATATATTTAATAAAAAAT
1 ATA-TTT-GATTAAAAAT---AAAAAAATATATATTTAAT-----AT
9756569 ATATTTGATTAAAAATAAAAA
1 ATATTTGATTAAAAATAAAAA
9756590 TAAAAATAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 17
0.74 0.03 0.23
Matches are distributed among these distances:
35 3 0.06
36 3 0.06
37 9 0.17
42 22 0.41
45 9 0.17
46 3 0.06
47 5 0.09
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.36
Consensus pattern (37 bp):
ATATTTGATTAAAAATAAAAAAATATATATTTAATAT
Found at i:9756594 original size:5 final size:6
Alignment explanation
Indices: 9756578--9756603 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
9756568 TATATTTGAT
9756578 TAAAAA TAAAAA TAAAAA TAAAAA TA
1 TAAAAA TAAAAA TAAAAA TAAAAA TA
9756604 GTTAATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:9763187 original size:55 final size:55
Alignment explanation
Indices: 9763112--9763235 Score: 176
Period size: 55 Copynumber: 2.3 Consensus size: 55
9763102 ACGACCTGGC
* * * *
9763112 ACACAGACGTGTGGTTTGGCCATGTGACCCAAGTCAGTGAGTTACATGGGCTAGA
1 ACACGGACGTGTGGTATGGCCATGTGACCCAAGTCAGTGAGTTACACGGGCAAGA
* *
9763167 ACACGGACGTGTGGTATGGCCGTGTGACCCAAGTCAGTGAGTTACACGGGCAAGG
1 ACACGGACGTGTGGTATGGCCATGTGACCCAAGTCAGTGAGTTACACGGGCAAGA
* *
9763222 ATACGGGCGTGTGG
1 ACACGGACGTGTGG
9763236 CTCCATTTCG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 61 1.00
ACGTcount: A:0.23, C:0.20, G:0.35, T:0.21
Consensus pattern (55 bp):
ACACGGACGTGTGGTATGGCCATGTGACCCAAGTCAGTGAGTTACACGGGCAAGA
Found at i:9764217 original size:12 final size:13
Alignment explanation
Indices: 9764200--9764228 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
9764190 AACAAGGTTC
9764200 AAAATAAAAA-TA
1 AAAATAAAAATTA
9764212 AAAATAAAAATTA
1 AAAATAAAAATTA
9764225 AAAA
1 AAAA
9764229 GTATTACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAATAAAAATTA
Found at i:9765980 original size:57 final size:57
Alignment explanation
Indices: 9765897--9766012 Score: 214
Period size: 57 Copynumber: 2.0 Consensus size: 57
9765887 GTTAAAGATA
**
9765897 TTGAGTGTTGCCATTGATTAATATATGTGATTTTATATATTAAATGGTGAATTTGAG
1 TTGAGTGTCACCATTGATTAATATATGTGATTTTATATATTAAATGGTGAATTTGAG
9765954 TTGAGTGTCACCATTGATTAATATATGTGATTTTATATATTAAATGGTGAATTTGAG
1 TTGAGTGTCACCATTGATTAATATATGTGATTTTATATATTAAATGGTGAATTTGAG
9766011 TT
1 TT
9766013 ATTAGTTATT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.46
Consensus pattern (57 bp):
TTGAGTGTCACCATTGATTAATATATGTGATTTTATATATTAAATGGTGAATTTGAG
Found at i:9766769 original size:26 final size:25
Alignment explanation
Indices: 9766731--9766800 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 25
9766721 CATGCCAAAC
9766731 CACAGTTCGTGTGAGCAAGCCTATTT
1 CACAGTTCGTGTGAGCAAGCC-ATTT
* * *
9766757 CAGAGTTCATGTGAGCAGATCCATTT
1 CACAGTTCGTGTGAGCA-AGCCATTT
*
9766783 CACAGCTCGTGTGAGCAA
1 CACAGTTCGTGTGAGCAA
9766801 TGATGTAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
25 1 0.03
26 33 0.89
27 3 0.08
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
CACAGTTCGTGTGAGCAAGCCATTT
Found at i:9783388 original size:564 final size:564
Alignment explanation
Indices: 9782312--9783445 Score: 1869
Period size: 564 Copynumber: 2.0 Consensus size: 564
9782302 GGCTAGAAAA
*
9782312 CTTAGGCAACTCAGGCTAATGAGGTGCTTCTAATTCATTTGATCTTAATGCCCCTTCTAGTCAGG
1 CTTAGGCAACTCAGGCTAATGAGGTGCTTCTAATTCATTTGATCTTAATGCCCCTTCTAGTCAAG
* ** *
9782377 GGCCATCCTTCCCCATTGATCAGGGAGTATTGCTGCAACAATTGTTTAGTTTGCAGGAGCAACTA
66 GGCCATCCTTCCCCATTGATCAGGGAGTATCGCCACAACAATTGTTTAGTTTGCAGGAACAACTA
* *
9782442 AGTTTAATGAAAGAACAGATGACTCAACGAAGTTTTAGGTTTGAACAACATCAATTGTTTCACTA
131 AGTTTAATGAAAGAACAGATGACTCAACGAAGTATCAGGTTTGAACAACATCAATTGTTTCACTA
*
9782507 GGAGCTGTTGATACAAAACGAAGAATTAAGAAGAAAGATACAGTTCGACCATTTGATCTTCAAGG
196 GGA-C-GTTGATACAAAACGAAGAATTAAGAAGAAAGATACAGTTCCACCATTTGATCTTCAAGG
* ***
9782572 AAATGTCGCGCCTCTTCAAGAGGAGATTGTGGAGGCACATGCAAAGCCATGGTAGAATGAGATGG
259 AAATGTCGCGCCTCTTCAAGAGGAGATTGTGGAGCCACATGCAAAGCCATAACAGAATGAGATGG
* *
9782637 ATGCTTTGCTTAGATATGTTCAAGCATTACACCCTGATGTGCAAGACATGGACTGATTGTTTTAT
324 ATGCTTTGCGTAGATAAGTTCAAGCATTACACCCTGATGTGCAAGACATGGACTGATTGTTTTAT
* * *
9782702 TCTAACAACCTTTTGTCTCTAGAAGTGCCAACTGTGAGCCTACTATCCGAGTTCAAAGTGTCGAA
389 TCTAACAACCTTTTGTCTCTAGAAGTGCCAACTGTGAGCCTACCATCCAAGTTCAAAGTCTCGAA
*
9782767 AGAAATGTTCGAATGTAGAAGGGACCCCAAGGCACATCTTATGTAGTATAATGATTATATGAATG
454 AGAAATGTTCGAAGGTAGAAGGGACCCCAAGGCACATCTTATGTAGTATAATGATTATATGAATG
* * *
9782832 TGTTAAGGGCCTTAAATGTGGCAGAGTGTAGGCTTTTTTAATAATT
519 TGTTAAGGGCCTCAAATGTGGCAGAGTGTAGGATTTTTCAATAATT
* *
9782878 CTTAGTCAACTCAGG-TCAATGAGGTGCTTCTAATTCATTTGATCTTAATGCCCCTTCTAGTTAA
1 CTTAGGCAACTCAGGCT-AATGAGGTGCTTCTAATTCATTTGATCTTAATGCCCCTTCTAGTCAA
* ** * * *
9782942 GGGCTATCCTTCCCTTTTGATCAGTGAGTATCGCCACAACAATTGTTTGGTTTGTAGGAACAACT
65 GGGCCATCCTTCCCCATTGATCAGGGAGTATCGCCACAACAATTGTTTAGTTTGCAGGAACAACT
*
9783007 AAGTTTGATGAAAGAACAGATGACTCAACGAAGTATCAGGTTTGAACAACATCAATTGTTTCACT
130 AAGTTTAATGAAAGAACAGATGACTCAACGAAGTATCAGGTTTGAACAACATCAATTGTTTCACT
* *
9783072 AGGA-GTTGGTACAAAACGAAGAATTAAGAAGAAAGATATAGTTCCACCATTCTGATCTTCAAGG
195 AGGACGTTGATACAAAACGAAGAATTAAGAAGAAAGATACAGTTCCACCATT-TGATCTTCAAGG
*
9783136 CAATGTCGCGCCTCTTCAAGAGGAGATTGTGGAGCCACATGCAAAGCCATAACAGAATGAGATGG
259 AAATGTCGCGCCTCTTCAAGAGGAGATTGTGGAGCCACATGCAAAGCCATAACAGAATGAGATGG
* * *
9783201 ATGCTTTGCGTAGATAAGTTCAAGGATTACACCCTGATGTGCAAGATATGGATTGATTGTTTTAT
324 ATGCTTTGCGTAGATAAGTTCAAGCATTACACCCTGATGTGCAAGACATGGACTGATTGTTTTAT
9783266 TCTAACAACCTTTTGTCTCTAGAAGTGCCAACTGTGAGCCTACCATCCAAGTTCAAAGTACT-GA
389 TCTAACAACCTTTTGTCTCTAGAAGTGCCAACTGTGAGCCTACCATCCAAGTTCAAAGT-CTCGA
9783330 AAGAAATGTTCGAAGGTAGAAGGGACCCCAAGGCACATCTTATGTAGTATAATGATTATATGAAT
453 AAGAAATGTTCGAAGGTAGAAGGGACCCCAAGGCACATCTTATGTAGTATAATGATTATATGAAT
*
9783395 GTGTTAAGGGCCTCAAATGTGGCAGAGTGTAGGATTTTTCAATGATT
518 GTGTTAAGGGCCTCAAATGTGGCAGAGTGTAGGATTTTTCAATAATT
9783442 CTTA
1 CTTA
9783446 AGGGAAGTGT
Statistics
Matches: 528, Mismatches: 37, Indels: 8
0.92 0.06 0.01
Matches are distributed among these distances:
563 44 0.08
564 302 0.57
565 2 0.00
566 180 0.34
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (564 bp):
CTTAGGCAACTCAGGCTAATGAGGTGCTTCTAATTCATTTGATCTTAATGCCCCTTCTAGTCAAG
GGCCATCCTTCCCCATTGATCAGGGAGTATCGCCACAACAATTGTTTAGTTTGCAGGAACAACTA
AGTTTAATGAAAGAACAGATGACTCAACGAAGTATCAGGTTTGAACAACATCAATTGTTTCACTA
GGACGTTGATACAAAACGAAGAATTAAGAAGAAAGATACAGTTCCACCATTTGATCTTCAAGGAA
ATGTCGCGCCTCTTCAAGAGGAGATTGTGGAGCCACATGCAAAGCCATAACAGAATGAGATGGAT
GCTTTGCGTAGATAAGTTCAAGCATTACACCCTGATGTGCAAGACATGGACTGATTGTTTTATTC
TAACAACCTTTTGTCTCTAGAAGTGCCAACTGTGAGCCTACCATCCAAGTTCAAAGTCTCGAAAG
AAATGTTCGAAGGTAGAAGGGACCCCAAGGCACATCTTATGTAGTATAATGATTATATGAATGTG
TTAAGGGCCTCAAATGTGGCAGAGTGTAGGATTTTTCAATAATT
Found at i:9793339 original size:46 final size:46
Alignment explanation
Indices: 9793246--9793339 Score: 109
Period size: 46 Copynumber: 2.0 Consensus size: 46
9793236 AGTACATGTA
* * * * *
9793246 TAGGTTCCGAGCTCCAGCAATTGTTGTAGACTTGAGAAAATAGGTT
1 TAGGTTCCAAGCTCCAGCAATTGTTGCAGACTCGAGAAAACAAGTT
* *
9793292 TAGGTTCCAAGCTCCAGC-ATGTGTTGCGGACTCGAGAATACAAGTT
1 TAGGTTCCAAGCTCCAGCAAT-TGTTGCAGACTCGAGAAAACAAGTT
9793338 TA
1 TA
9793340 TTAAGCCTTC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
45 2 0.05
46 38 0.95
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (46 bp):
TAGGTTCCAAGCTCCAGCAATTGTTGCAGACTCGAGAAAACAAGTT
Found at i:9794802 original size:21 final size:21
Alignment explanation
Indices: 9794778--9794889 Score: 59
Period size: 21 Copynumber: 5.3 Consensus size: 21
9794768 ATGCTTTACT
9794778 TTCTGTTAAGCTCTTTTGAGC
1 TTCTGTTAAGCTCTTTTGAGC
* * *
9794799 TTCTGTTTAA-CTCATATGA-T
1 TTCTG-TTAAGCTCTTTTGAGC
* * *
9794819 TTTTCGTTCAGCTCATTTGAGC
1 TTCT-GTTAAGCTCTTTTGAGC
* * * * *
9794841 TTTTGTTTAA-CCCTTATGGGT
1 TTCTG-TTAAGCTCTTTTGAGC
* *
9794862 TTCCGTTCAGCTCTTTTGAGC
1 TTCTGTTAAGCTCTTTTGAGC
9794883 TTCTGTT
1 TTCTGTT
9794890 TAACCCTTAT
Statistics
Matches: 64, Mismatches: 21, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
20 9 0.14
21 44 0.69
22 11 0.17
ACGTcount: A:0.14, C:0.20, G:0.17, T:0.49
Consensus pattern (21 bp):
TTCTGTTAAGCTCTTTTGAGC
Found at i:9794832 original size:42 final size:42
Alignment explanation
Indices: 9794777--9794989 Score: 273
Period size: 42 Copynumber: 5.0 Consensus size: 42
9794767 CATGCTTTAC
* * * **
9794777 TTTCTGTTAAGCTCTTTTGAGCTTCTGTTTAACTCATATGATT
1 TTTC-GTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
* *
9794820 TTTCGTTCAGCTCATTTGAGCTTTTGTTTAACCCTTATGGGT
1 TTTCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
*
9794862 TTCCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
1 TTTCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
* *
9794904 TTTCGTTCAGCTCTTTTTAGCTTCTGTTTCACCCTTATGGGT
1 TTTCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
* *** * *
9794946 TTCCGTTCAGCTCTTACAAGCTTCTGTTCAACCTTTATGGGT
1 TTTCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
9794988 TT
1 TT
9794990 CTATTTAGCT
Statistics
Matches: 150, Mismatches: 20, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
42 146 0.97
43 4 0.03
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.47
Consensus pattern (42 bp):
TTTCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
Found at i:9794961 original size:21 final size:21
Alignment explanation
Indices: 9794853--9794961 Score: 76
Period size: 21 Copynumber: 5.2 Consensus size: 21
9794843 TTGTTTAACC
9794853 CTTATGGGTTTCCGTTCAGCT
1 CTTATGGGTTTCCGTTCAGCT
* * * * * * *
9794874 CTTTTGAGCTTCTGTTTAACC
1 CTTATGGGTTTCCGTTCAGCT
*
9794895 CTTATGGGTTTTCGTTCAGCT
1 CTTATGGGTTTCCGTTCAGCT
* ** * * *
9794916 CTTTTTAGCTTCTGTTTCA-CC
1 CTTATGGGTTTCCG-TTCAGCT
9794937 CTTATGGGTTTCCGTTCAGCT
1 CTTATGGGTTTCCGTTCAGCT
9794958 CTTA
1 CTTA
9794962 CAAGCTTCTG
Statistics
Matches: 58, Mismatches: 28, Indels: 4
0.64 0.31 0.04
Matches are distributed among these distances:
20 4 0.07
21 50 0.86
22 4 0.07
ACGTcount: A:0.11, C:0.24, G:0.18, T:0.47
Consensus pattern (21 bp):
CTTATGGGTTTCCGTTCAGCT
Found at i:9794990 original size:42 final size:42
Alignment explanation
Indices: 9794777--9795017 Score: 234
Period size: 42 Copynumber: 5.7 Consensus size: 42
9794767 CATGCTTTAC
* * * * * * **
9794777 TTTCTGTTAAGCTCTTTTGAGCTTCTGTTTAACTCATATGAT
1 TTTCCGTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATGGG
* * *
9794819 TTTTCGTTCAGCTCATT-TGAGCTTTTGTTTAACCCTTATGGG
1 TTTCCGTTCAGCTC-TTATGAGCTTCTGTTCAACCCTTATGGG
* *
9794861 TTTCCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGG
1 TTTCCGTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATGGG
* * *
9794903 TTTTCGTTCAGCTCTTTTTAGCTTCTGTTTC-ACCCTTATGGG
1 TTTCCGTTCAGCTCTTATGAGCTTCTG-TTCAACCCTTATGGG
** *
9794945 TTTCCGTTCAGCTCTTACAAGCTTCTGTTCAACCTTTATGGG
1 TTTCCGTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATGGG
** * * *
9794987 TTTCTATTTAGCTCTCAGGAGCTTCTGTTCA
1 TTTCCGTTCAGCTCTTATGAGCTTCTGTTCA
9795018 GCTTTCGAGC
Statistics
Matches: 171, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
41 5 0.03
42 162 0.95
43 4 0.02
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.46
Consensus pattern (42 bp):
TTTCCGTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATGGG
Found at i:9795011 original size:126 final size:127
Alignment explanation
Indices: 9794777--9795015 Score: 284
Period size: 126 Copynumber: 1.9 Consensus size: 127
9794767 CATGCTTTAC
* * * **
9794777 TTTCTGTTAAGCTCTTTTGAGCTTCTGTTTAACTCATATGATTTTTCGTTCAGCTCATTTGAGCT
1 TTTCTGTTAAGCTCTTTTGAGCTTCTGTTTAACCCATATGAGTTTCCGTTCAGCTCATTCAAGCT
* * * ***
9794842 TTTGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
66 TCTGTTCAACCCTTATGGGTTTCCATTCAGCTCTCAGGAGCTTCTGTTTAACCCTTATGGGT
* * * * *
9794904 TTTC-GTTCAGCTCTTTTTAGCTTCTGTTTCACCCTTATGGGTTTCCGTTCAGCTC-TTACAAGC
1 TTTCTGTTAAGCTCTTTTGAGCTTCTGTTTAACCCATATGAGTTTCCGTTCAGCTCATT-CAAGC
* * *
9794967 TTCTGTTCAACCTTTATGGGTTTCTATTTAGCTCTCAGGAGCTTCTGTT
65 TTCTGTTCAACCCTTATGGGTTTCCATTCAGCTCTCAGGAGCTTCTGTT
9795016 CAGCTTTCGA
Statistics
Matches: 92, Mismatches: 19, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
125 2 0.02
126 86 0.93
127 4 0.04
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.47
Consensus pattern (127 bp):
TTTCTGTTAAGCTCTTTTGAGCTTCTGTTTAACCCATATGAGTTTCCGTTCAGCTCATTCAAGCT
TCTGTTCAACCCTTATGGGTTTCCATTCAGCTCTCAGGAGCTTCTGTTTAACCCTTATGGGT
Found at i:9801093 original size:30 final size:29
Alignment explanation
Indices: 9801059--9801147 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 29
9801049 AGAATCAGTC
* * *
9801059 TGGGCCTGAGCCCTATACAATAGCAGTGTG
1 TGGGCCT-AGCCCAATACAGTAACAGTGTG
** *
9801089 TGGGCCATAG-CCAATACAGTATTAGAGTG
1 TGGGCC-TAGCCCAATACAGTAACAGTGTG
9801118 TGGGCCTTAGCCCAATACAGTAACAGTGTG
1 TGGGCC-TAGCCCAATACAGTAACAGTGTG
9801148 GGCTTTATCC
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
29 23 0.48
30 24 0.50
31 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (29 bp):
TGGGCCTAGCCCAATACAGTAACAGTGTG
Found at i:9801159 original size:28 final size:29
Alignment explanation
Indices: 9801086--9801160 Score: 91
Period size: 28 Copynumber: 2.6 Consensus size: 29
9801076 CAATAGCAGT
* *
9801086 GTGTGGGCCATAG-CCAATACAGTATTAGA
1 GTGTGGGCCTTAGCCCAATACAGTA-TACA
9801115 GTGTGGGCCTTAGCCCAATACAGTA-ACA
1 GTGTGGGCCTTAGCCCAATACAGTATACA
* *
9801143 GTGTGGGCTTTATCCCAA
1 GTGTGGGCCTTAGCCCAA
9801161 AATAGTAATC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
28 18 0.44
29 12 0.29
30 11 0.27
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (29 bp):
GTGTGGGCCTTAGCCCAATACAGTATACA
Found at i:9801167 original size:28 final size:29
Alignment explanation
Indices: 9801086--9801173 Score: 81
Period size: 28 Copynumber: 3.1 Consensus size: 29
9801076 CAATAGCAGT
* * * *
9801086 GTGTGGGCCATAG-CCAATACAGTATTAGA
1 GTGTGGGCCTTAGCCCAAAACAGTAAT-CA
*
9801115 GTGTGGGCCTTAGCCCAATACAGTAA-CA
1 GTGTGGGCCTTAGCCCAAAACAGTAATCA
* * *
9801143 GTGTGGGCTTTATCCCAAAATAGTAATCA
1 GTGTGGGCCTTAGCCCAAAACAGTAATCA
9801172 GT
1 GT
9801174 ACAAATGCAG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.46
29 16 0.32
30 11 0.22
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (29 bp):
GTGTGGGCCTTAGCCCAAAACAGTAATCA
Found at i:9801384 original size:26 final size:26
Alignment explanation
Indices: 9801281--9801384 Score: 93
Period size: 26 Copynumber: 4.0 Consensus size: 26
9801271 CACCAATATC
* **
9801281 GCAGCAAAGGTGCCAGTATCAGTAAC
1 GCAGCAAAGCTGCCAGTATCAGTATT
* *
9801307 GCAGCAAAGCTGCCAATAACAGTATT
1 GCAGCAAAGCTGCCAGTATCAGTATT
* * * * *
9801333 ACAGCAGAGCCGTCGGTATCAGTATT
1 GCAGCAAAGCTGCCAGTATCAGTATT
*
9801359 GCAGCAAAGTTGCCAGTCA-CAGTATT
1 GCAGCAAAGCTGCCAGT-ATCAGTATT
9801385 TGTGGCAAAG
Statistics
Matches: 59, Mismatches: 18, Indels: 2
0.75 0.23 0.03
Matches are distributed among these distances:
26 58 0.98
27 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (26 bp):
GCAGCAAAGCTGCCAGTATCAGTATT
Found at i:9801626 original size:27 final size:27
Alignment explanation
Indices: 9801593--9801994 Score: 468
Period size: 27 Copynumber: 14.8 Consensus size: 27
9801583 ATCTTTTGCG
*
9801593 GGGTATTTCGATAATTTTACCATTCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
* * *
9801620 GGGTATTTTGATAATTTT-CTCCTTTGG
1 GGGTATTTCGATAATTTTAC-CCTTCGA
* * **
9801647 GGGTATTTCAATAATTTTACCTTTAAA
1 GGGTATTTCGATAATTTTACCCTTCGA
* *
9801674 GGGTATTTTGGTAATTTTACCCTAT-GA
1 GGGTATTTCGATAATTTTACCCT-TCGA
* *
9801701 AGGTATTTCGGTAATTTTACCCTTCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
*
9801728 GGGTATTTCGATAATTTTACCTTTCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
* * * * *
9801755 AGGTATTTTGGTAATTTTACCCATCAA
1 GGGTATTTCGATAATTTTACCCTTCGA
* *
9801782 GGGTATTTCGGTAAATTTTACCTTTCGA
1 GGGTATTTCGAT-AATTTTACCCTTCGA
*
9801810 GGGTATTTCGGTAAATTTTACCCTTCGA
1 GGGTATTTCGAT-AATTTTACCCTTCGA
9801838 GGGTATTTCGATAATTTTACCCTTCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
* *
9801865 GGGTATTTTGGTAATTTTACCCTTCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
* * *
9801892 CGGTATTCCGATAATTTTACCCATCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
* *
9801919 GGGTATTTTGGTAATTTTACCCATT-GA
1 GGGTATTTCGATAATTTTACCC-TTCGA
* *
9801946 GGGTATTTCGATAATTTTATCTTTCGA
1 GGGTATTTCGATAATTTTACCCTTCGA
9801973 GGGTATTTCGATAATTTTACCC
1 GGGTATTTCGATAATTTTACCC
9801995 ATGAATAACA
Statistics
Matches: 317, Mismatches: 51, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
26 4 0.01
27 260 0.82
28 53 0.17
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.43
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACCCTTCGA
Found at i:9802664 original size:13 final size:13
Alignment explanation
Indices: 9802646--9802670 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9802636 CACAAAAATG
9802646 GAGATGAGAAGAA
1 GAGATGAGAAGAA
9802659 GAGATGAGAAGA
1 GAGATGAGAAGA
9802671 GAATATTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.40, T:0.08
Consensus pattern (13 bp):
GAGATGAGAAGAA
Found at i:9807637 original size:28 final size:28
Alignment explanation
Indices: 9807581--9807648 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
9807571 TGACTTTCGA
*
9807581 CACTAAGTGTGCGAGTTTAATGGTAAAG
1 CACTAAGTGTGCGAGTTTAATGATAAAG
* * * *
9807609 CACTAAGTGTGTGAGTTTGATTATTAAG
1 CACTAAGTGTGCGAGTTTAATGATAAAG
*
9807637 CACTAAATGTGC
1 CACTAAGTGTGC
9807649 AAACTTATTA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATGATAAAG
Found at i:9815900 original size:6 final size:6
Alignment explanation
Indices: 9815889--9815922 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
9815879 AGCCAAAGGT
9815889 TTTTAA TTTTAA TTTTAA TTTTGCAA TTTTAA TT
1 TTTTAA TTTTAA TTTTAA TTTT--AA TTTTAA TT
9815923 GTCTTTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 20 0.77
8 6 0.23
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (6 bp):
TTTTAA
Found at i:9815983 original size:17 final size:19
Alignment explanation
Indices: 9815963--9815997 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
9815953 TCCCCAAGTA
9815963 CTAATT-AGTTT-ATTTTC
1 CTAATTCAGTTTAATTTTC
9815980 CTAATTCAGTTTAATTTT
1 CTAATTCAGTTTAATTTT
9815998 TCAGTATAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 5 0.31
19 5 0.31
ACGTcount: A:0.26, C:0.11, G:0.06, T:0.57
Consensus pattern (19 bp):
CTAATTCAGTTTAATTTTC
Found at i:9817031 original size:20 final size:20
Alignment explanation
Indices: 9816994--9817031 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9816984 ACCTAACACG
*
9816994 AATTAAAGTTAAGCCATATT
1 AATTAAAGTTAAACCATATT
9817014 AATTAAA-TTAAACACATA
1 AATTAAAGTTAAAC-CATA
9817032 AACATCACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.53, C:0.11, G:0.05, T:0.32
Consensus pattern (20 bp):
AATTAAAGTTAAACCATATT
Found at i:9817807 original size:15 final size:15
Alignment explanation
Indices: 9817787--9817823 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
9817777 GCTTCAAAAT
9817787 TGCTTCTCGATTTTG
1 TGCTTCTCGATTTTG
9817802 TGCTTCTCGATTTTG
1 TGCTTCTCGATTTTG
9817817 TGCTTCT
1 TGCTTCT
9817824 AGCAATGTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.05, C:0.22, G:0.19, T:0.54
Consensus pattern (15 bp):
TGCTTCTCGATTTTG
Found at i:9821540 original size:16 final size:15
Alignment explanation
Indices: 9821515--9821548 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
9821505 AAAGTTGATA
*
9821515 ATAATTAATATATATT
1 ATAATAAATATA-ATT
9821531 ATAATAAATATAATT
1 ATAATAAATATAATT
9821546 ATA
1 ATA
9821549 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:9826429 original size:42 final size:42
Alignment explanation
Indices: 9826375--9826471 Score: 162
Period size: 42 Copynumber: 2.3 Consensus size: 42
9826365 CAAGTACGAC
*
9826375 AAAAA-GGGGGAAAGGAAAAAGACATGG-AGGATGACACGAAT
1 AAAAATGGGGGAAAGGAAAAAGACACGGAAGG-TGACACGAAT
9826416 AAAAATGGGGGAAAGGAAAAAGACACGGAAGGTGACACGAAT
1 AAAAATGGGGGAAAGGAAAAAGACACGGAAGGTGACACGAAT
9826458 AAAAATGGGGGAAA
1 AAAAATGGGGGAAA
9826472 TGTTTTTGCT
Statistics
Matches: 53, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
41 5 0.09
42 45 0.85
43 3 0.06
ACGTcount: A:0.52, C:0.07, G:0.34, T:0.07
Consensus pattern (42 bp):
AAAAATGGGGGAAAGGAAAAAGACACGGAAGGTGACACGAAT
Found at i:9835346 original size:8 final size:8
Alignment explanation
Indices: 9835333--9835361 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
9835323 GTCAAATAAA
9835333 AAATAATT
1 AAATAATT
9835341 AAATAATT
1 AAATAATT
9835349 AAATAATT
1 AAATAATT
9835357 AAATA
1 AAATA
9835362 GAACAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (8 bp):
AAATAATT
Found at i:9837234 original size:18 final size:18
Alignment explanation
Indices: 9837211--9837251 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
9837201 TCTTCCATTA
*
9837211 AACTAATGAGTTGGCAAT
1 AACTAATGAGTCGGCAAT
9837229 AACTAATGAGTCGGCAAT
1 AACTAATGAGTCGGCAAT
9837247 AACTA
1 AACTA
9837252 CTTATCTCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (18 bp):
AACTAATGAGTCGGCAAT
Found at i:9838023 original size:27 final size:27
Alignment explanation
Indices: 9837959--9838023 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
9837949 TCTTGGAATT
* *
9837959 TTGGCACTCTTTTCACTATGTTGTGACA
1 TTGG-ACTCTTTCCACTATGTTGCGACA
* * *
9837987 TTGAAATCTTTCCACTATGTTGCGATA
1 TTGGACTCTTTCCACTATGTTGCGACA
9838014 TTGGACTCTT
1 TTGGACTCTT
9838024 GTGTTGCAAC
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
27 27 0.90
28 3 0.10
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.43
Consensus pattern (27 bp):
TTGGACTCTTTCCACTATGTTGCGACA
Found at i:9841879 original size:3 final size:3
Alignment explanation
Indices: 9841871--9841927 Score: 87
Period size: 3 Copynumber: 19.0 Consensus size: 3
9841861 CCCACCAGCT
* *
9841871 TCA TCA TCA TCA TCA CCA TCA TCA TCA TCA TCA TCA TCA TCA TCA CCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
*
9841919 TCA CCA TCA
1 TCA TCA TCA
9841928 CCACCACCAC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.39, G:0.00, T:0.28
Consensus pattern (3 bp):
TCA
Found at i:9841928 original size:6 final size:6
Alignment explanation
Indices: 9841875--9841936 Score: 70
Period size: 6 Copynumber: 10.3 Consensus size: 6
9841865 CCAGCTTCAT
* * * * *
9841875 CATCAT CATCAC CATCAT CATCAT CATCAT CATCAT CATCAC CATCAC
1 CATCAC CATCAC CATCAC CATCAC CATCAC CATCAC CATCAC CATCAC
*
9841923 CATCAC CACCAC CA
1 CATCAC CATCAC CA
9841937 CCTTCAAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 52 1.00
ACGTcount: A:0.34, C:0.44, G:0.00, T:0.23
Consensus pattern (6 bp):
CATCAC
Found at i:9860032 original size:267 final size:266
Alignment explanation
Indices: 9859529--9860082 Score: 777
Period size: 267 Copynumber: 2.1 Consensus size: 266
9859519 CGCCTTGAAG
** * ** **
9859529 TTGCAATGGAAAAGATTGAAGCCACGACGGCGAACCTTACTTCCCTGGGTTGTAGCGGAGTAGAT
1 TTGCAATTTAAAAGATTGAAGCCACAACGGAAAACCTTACTTCCCTGGGTTGTAGCGGAACAGAT
* * * *
9859594 TGAAGCCACGACGATGAATCTTATCTCTCTGGCATTAAGGCTTGGATTAGCTGAAGTGGAGCGGG
66 TGAAGCCACGACGACGAATCTTATCTCCCTGGCATTAAGACTTGGATTAGCTGAAGTGGAGCGGA
* * * * ** * *
9859659 TTGAAGCTGTGGGCAGCGAATCCTATCTTTTTGGCATTATAGTGCATTAGATTAAAGCCGCAATG
131 TTGAAGCTGTGGGCAGCGAATCCTATCTCTTTGGAATTACAATGCAGCAGATTAAAGCCGAAACG
* * * *
9859724 GCGAATCTTACTCCCTTGGTGGTGTAATGGAACAGATTGAAGCTACGACAGCCAATCTTTTTTCC
196 GCGAATCTTACTCCCTTGGCGGTGTAATGAAACAAATTGAAGCTACGACAGCCAATCTTGTTTCC
9859789 CCAACA
261 CCAACA
* * *
9859795 TTGCAATTTAAAAGATTGAAGCCGCAACGGAAAATCTTATTTCCCTGGCGTTGTAGCGGAACAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGAAAACCTTACTTCCCTGG-GTTGTAGCGGAACAGA
* *
9859860 TTGAAGCCACGACGGCGAATCTTATCTCCCTGGCGTTAAGACTTGGATTAGCTGAAGTGGAGCGG
65 TTGAAGCCACGACGACGAATCTTATCTCCCTGGCATTAAGACTTGGATTAGCTGAAGTGGAGCGG
*
9859925 ATTGAAGCTGTGGGCAGCGAATCCTATCTCTTTGGAATTACAATGGAGCAGATTAAAGCCGAAAC
130 ATTGAAGCTGTGGGCAGCGAATCCTATCTCTTTGGAATTACAATGCAGCAGATTAAAGCCGAAAC
* ** *
9859990 GGCGAATCTTACTTCCC-TGGCGGTGTAGTGAAACAAATTGAAGCTACGATGGCGAATCTTGTTT
195 GGCGAATCTTAC-TCCCTTGGCGGTGTAATGAAACAAATTGAAGCTACGACAGCCAATCTTGTTT
9860054 CCCCAACA
259 CCCCAACA
*
9860062 TTGCAATTTAAAAGACTGAAG
1 TTGCAATTTAAAAGATTGAAG
9860083 ATGGCAAATC
Statistics
Matches: 252, Mismatches: 34, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
266 40 0.16
267 208 0.83
268 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (266 bp):
TTGCAATTTAAAAGATTGAAGCCACAACGGAAAACCTTACTTCCCTGGGTTGTAGCGGAACAGAT
TGAAGCCACGACGACGAATCTTATCTCCCTGGCATTAAGACTTGGATTAGCTGAAGTGGAGCGGA
TTGAAGCTGTGGGCAGCGAATCCTATCTCTTTGGAATTACAATGCAGCAGATTAAAGCCGAAACG
GCGAATCTTACTCCCTTGGCGGTGTAATGAAACAAATTGAAGCTACGACAGCCAATCTTGTTTCC
CCAACA
Found at i:9860244 original size:44 final size:45
Alignment explanation
Indices: 9860142--9860250 Score: 121
Period size: 45 Copynumber: 2.4 Consensus size: 45
9860132 AGGTCTTATA
* * * * *
9860142 TCCCTAAAGTTGCAGTAGAGCAGACTCAAGAAAGCAAGTCTTATC
1 TCCCTAAAGTTGTAGTGGAGCAGACTAAAGAAAGCAAATCCTATC
* * * * *
9860187 CCCCTAAAATTGTAGTGGGGCAGACTAAATAAA-CAAATCCTGTC
1 TCCCTAAAGTTGTAGTGGAGCAGACTAAAGAAAGCAAATCCTATC
9860231 TCCCTAAAGTTGTAGTGGAG
1 TCCCTAAAGTTGTAGTGGAG
9860251 TGGATTAGAG
Statistics
Matches: 51, Mismatches: 13, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
44 25 0.49
45 26 0.51
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (45 bp):
TCCCTAAAGTTGTAGTGGAGCAGACTAAAGAAAGCAAATCCTATC
Found at i:9866245 original size:134 final size:134
Alignment explanation
Indices: 9865997--9866277 Score: 539
Period size: 134 Copynumber: 2.1 Consensus size: 134
9865987 TTATTTTAAT
9865997 AATTA-AAA-CAAATAGAATGCAATCCATCTAACACGAATTAGATTTAAGTCATTTAAATTAGAA
1 AATTAGAAAGCAAATAGAATGCAATCCATCTAACACGAATTAGATTTAAGTCATTTAAATTAGAA
*
9866060 CAAGAACAACAACACAACAATTATTCATGTTCATGATCACAACATAAACAGGAAAATTAAAGAGA
66 CAAGAACAACAACACAACAATTATTCATGTTCATGATCACAACATAAACAGGAAAATTAAAAAGA
9866125 AGGG
131 AGGG
9866129 AATTAGAAAGCAAATAGAATGCAATCCATCTAACACGAATTAGATTTAAGTCATTTAAATTAGAA
1 AATTAGAAAGCAAATAGAATGCAATCCATCTAACACGAATTAGATTTAAGTCATTTAAATTAGAA
9866194 CAAGAACAACAACACAACAATTATTCATGTTCATGATCACAACATAAACAGGAAAATTAAAAAGA
66 CAAGAACAACAACACAACAATTATTCATGTTCATGATCACAACATAAACAGGAAAATTAAAAAGA
9866259 AGGG
131 AGGG
9866263 AATTAGAAAGCAAAT
1 AATTAGAAAGCAAAT
9866278 CCAATATTTC
Statistics
Matches: 146, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
132 5 0.03
133 3 0.02
134 138 0.95
ACGTcount: A:0.51, C:0.15, G:0.12, T:0.22
Consensus pattern (134 bp):
AATTAGAAAGCAAATAGAATGCAATCCATCTAACACGAATTAGATTTAAGTCATTTAAATTAGAA
CAAGAACAACAACACAACAATTATTCATGTTCATGATCACAACATAAACAGGAAAATTAAAAAGA
AGGG
Found at i:9877321 original size:6 final size:6
Alignment explanation
Indices: 9877312--9877341 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
9877302 AACAAATTAC
9877312 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA
1 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA
9877342 GGCAAAGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
ATTAAA
Found at i:9885815 original size:52 final size:48
Alignment explanation
Indices: 9885796--9885998 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
9885786 TGACAAGTGG
* *
9885796 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
9885842 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
9885894 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
9885940 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
9885986 AAAGTGATAAGTG
1 AAAGTGATAAGTG
9885999 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:9885850 original size:98 final size:98
Alignment explanation
Indices: 9885730--9885998 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
9885720 TTTGAGTACT
*
9885730 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
9885795 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
9885828 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
9885893 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
9885926 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
9885991 GATAAGTG
65 GAAAAGTG
9885999 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:9886006 original size:37 final size:37
Alignment explanation
Indices: 9885962--9886107 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
9885952 GATAGCTTTA
*
9885962 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
9885999 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
9886036 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
9886073 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
9886108 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:9887423 original size:49 final size:49
Alignment explanation
Indices: 9887362--9887505 Score: 225
Period size: 49 Copynumber: 2.9 Consensus size: 49
9887352 ATGTGAACAT
* *
9887362 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
9887412 GTGATATGTGATTTCGTGTAAGACCATAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
9887461 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCG
9887506 AGAAAACGAA
Statistics
Matches: 88, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
49 84 0.95
50 4 0.05
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.33
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
Found at i:9890716 original size:52 final size:48
Alignment explanation
Indices: 9890697--9890899 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
9890687 TGACAAGTGG
* *
9890697 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
9890743 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
9890795 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
9890841 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
9890887 AAAGTGATAAGTG
1 AAAGTGATAAGTG
9890900 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:9890751 original size:98 final size:98
Alignment explanation
Indices: 9890631--9890899 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
9890621 TTTGAGTACT
*
9890631 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
9890696 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
9890729 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
9890794 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
9890827 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
9890892 GATAAGTG
65 GAAAAGTG
9890900 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:9890907 original size:37 final size:37
Alignment explanation
Indices: 9890863--9891008 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
9890853 GATAGCTTTA
*
9890863 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
9890900 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
9890937 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
9890974 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
9891009 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:9892324 original size:49 final size:49
Alignment explanation
Indices: 9892263--9892406 Score: 225
Period size: 49 Copynumber: 2.9 Consensus size: 49
9892253 ATGTGAACAT
* *
9892263 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
9892313 GTGATATGTGATTTCGTGTAAGACCATAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
9892362 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCG
9892407 AGAAAACGAA
Statistics
Matches: 88, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
49 84 0.95
50 4 0.05
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.33
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
Found at i:9895617 original size:52 final size:48
Alignment explanation
Indices: 9895598--9895800 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
9895588 TGACAAGTGG
* *
9895598 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
9895644 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
9895696 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
9895742 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
9895788 AAAGTGATAAGTG
1 AAAGTGATAAGTG
9895801 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:9895652 original size:98 final size:98
Alignment explanation
Indices: 9895532--9895800 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
9895522 TTTGAGTACT
*
9895532 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
9895597 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
9895630 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
9895695 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
9895728 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
9895793 GATAAGTG
65 GAAAAGTG
9895801 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:9895808 original size:37 final size:37
Alignment explanation
Indices: 9895764--9895909 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
9895754 GATAGCTTTA
*
9895764 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
9895801 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
9895838 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
9895875 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
9895910 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:9907092 original size:14 final size:15
Alignment explanation
Indices: 9907073--9907103 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
9907063 TATCTCTTGA
9907073 ATGTTA-TTTATTTT
1 ATGTTATTTTATTTT
9907087 ATGTTATTTTATTTT
1 ATGTTATTTTATTTT
9907102 AT
1 AT
9907104 TACTATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (15 bp):
ATGTTATTTTATTTT
Found at i:9912302 original size:35 final size:35
Alignment explanation
Indices: 9912256--9912326 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
9912246 GTTCATAGCT
9912256 CAGTGTACTATGTATATAGAGTGTCGCCAATTATG
1 CAGTGTACTATGTATATAGAGTGTCGCCAATTATG
9912291 CAGTGTACTATGTATATAGAGTGTCGCCAATTATG
1 CAGTGTACTATGTATATAGAGTGTCGCCAATTATG
9912326 C
1 C
9912327 TTCTAGTGGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (35 bp):
CAGTGTACTATGTATATAGAGTGTCGCCAATTATG
Found at i:9913776 original size:21 final size:21
Alignment explanation
Indices: 9913728--9913776 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
9913718 TTTGGTCGTA
9913728 GCATTGCAACGAGGGACTGCC
1 GCATTGCAACGAGGGACTGCC
**
9913749 GTGTTGCAACGAGGGACTGCC
1 GCATTGCAACGAGGGACTGCC
9913770 GCATTGC
1 GCATTGC
9913777 GACCTTGGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (21 bp):
GCATTGCAACGAGGGACTGCC
Found at i:9919570 original size:5 final size:5
Alignment explanation
Indices: 9919560--9919589 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
9919550 TCATTAAGCT
9919560 GACCC GACCC GACCC GACCC GACCC GACCC
1 GACCC GACCC GACCC GACCC GACCC GACCC
9919590 TATGTAAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.60, G:0.20, T:0.00
Consensus pattern (5 bp):
GACCC
Found at i:9931986 original size:43 final size:43
Alignment explanation
Indices: 9931939--9932024 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
9931929 TTGTACTGCC
*
9931939 AAATATTGCATTAATATTGATTTTGTTTTAGTACTAAATAAGA
1 AAATATTGCATTAATATTGATTTTGTTTCAGTACTAAATAAGA
* *
9931982 AAATATTGTATTAATATTGGTTTTGTTTCAGTACTAAATAAGA
1 AAATATTGCATTAATATTGATTTTGTTTCAGTACTAAATAAGA
9932025 TAATTTCCAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (43 bp):
AAATATTGCATTAATATTGATTTTGTTTCAGTACTAAATAAGA
Found at i:9935115 original size:54 final size:54
Alignment explanation
Indices: 9935005--9935121 Score: 121
Period size: 54 Copynumber: 2.2 Consensus size: 54
9934995 AAGTTAGTGT
* * *
9935005 GTTACACGGCCTAGCACACGGCCTGCGACACGGCCGTGTGTTGCAAGTCAGAGA
1 GTTACACGGCCTAGCACACGGCCTGCGACACGGCCATGTGCTGCAACTCAGAGA
* * * * *
9935059 GTTACACGGTCT-GACATACGGCCTGCGATACGGCCATGTGACT-CAACTCGGTGA
1 GTTACACGGCCTAG-CACACGGCCTGCGACACGGCCATGTG-CTGCAACTCAGAGA
*
9935113 GTTGCACGG
1 GTTACACGG
9935122 GTGGAGACAC
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
53 1 0.02
54 50 0.96
55 1 0.02
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.20
Consensus pattern (54 bp):
GTTACACGGCCTAGCACACGGCCTGCGACACGGCCATGTGCTGCAACTCAGAGA
Found at i:9959058 original size:91 final size:91
Alignment explanation
Indices: 9958955--9959138 Score: 368
Period size: 91 Copynumber: 2.0 Consensus size: 91
9958945 TAAAAGTTGC
9958955 ATACCTTTGCGGAATAACTACCAAAATAACCCTAACATTCTAAACAAAACCTAAAATGTCAATAG
1 ATACCTTTGCGGAATAACTACCAAAATAACCCTAACATTCTAAACAAAACCTAAAATGTCAATAG
9959020 CTCGTAAAACCCAAGAAAAGTCCAAA
66 CTCGTAAAACCCAAGAAAAGTCCAAA
9959046 ATACCTTTGCGGAATAACTACCAAAATAACCCTAACATTCTAAACAAAACCTAAAATGTCAATAG
1 ATACCTTTGCGGAATAACTACCAAAATAACCCTAACATTCTAAACAAAACCTAAAATGTCAATAG
9959111 CTCGTAAAACCCAAGAAAAGTCCAAA
66 CTCGTAAAACCCAAGAAAAGTCCAAA
9959137 AT
1 AT
9959139 TTCCATATTA
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 93 1.00
ACGTcount: A:0.47, C:0.24, G:0.09, T:0.20
Consensus pattern (91 bp):
ATACCTTTGCGGAATAACTACCAAAATAACCCTAACATTCTAAACAAAACCTAAAATGTCAATAG
CTCGTAAAACCCAAGAAAAGTCCAAA
Found at i:9959368 original size:5 final size:5
Alignment explanation
Indices: 9959360--9959405 Score: 92
Period size: 5 Copynumber: 9.2 Consensus size: 5
9959350 AAGTATAACT
9959360 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA T
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA T
9959406 GTCCTACCCC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.41
Consensus pattern (5 bp):
TATCA
Found at i:9961267 original size:16 final size:18
Alignment explanation
Indices: 9961241--9961273 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
9961231 TAGAATCGGG
9961241 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
9961258 TTGA-AAAATTAATTTA
1 TTGAGAAAATTAATTTA
9961274 TTTATCTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:9966544 original size:12 final size:12
Alignment explanation
Indices: 9966527--9966559 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
9966517 TGATGAAAAT
9966527 ATCATCTTTTTC
1 ATCATCTTTTTC
9966539 ATCATCTTTTTC
1 ATCATCTTTTTC
9966551 ATCATCTTT
1 ATCATCTTT
9966560 CCCAAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.18, C:0.24, G:0.00, T:0.58
Consensus pattern (12 bp):
ATCATCTTTTTC
Found at i:9967435 original size:47 final size:48
Alignment explanation
Indices: 9967383--9967571 Score: 170
Period size: 47 Copynumber: 3.9 Consensus size: 48
9967373 TGGTTGGACC
* *
9967383 ATGGCAACA-TGTAATATGTGATTTCTGTATAAGACCATAGCTGAGTT
1 ATGGCATCAGTGTAATATGTGATTTCTGTATAAGACCATAGCTGAGAT
* * * *
9967430 ATGGCATCGGTGTGATGTGATTATGAGTTTCTGTATAAGACCATATCTGAGAT
1 ATGGCATCAGTGT-A-AT-A-TGTGA-TTTCTGTATAAGACCATAGCTGAGAT
* * * * *
9967483 ATGGCATCAGTGTGATATGTG-CTACTGTGTAAGACCATATCTGAGAT
1 ATGGCATCAGTGTAATATGTGATTTCTGTATAAGACCATAGCTGAGAT
* * * *
9967530 ATGACATCAGTGTGATATGTGA--TCCGTATAAGACCATGGCTG
1 ATGGCATCAGTGTAATATGTGATTTCTGTATAAGACCATAGCTG
9967572 GGCAATAGCT
Statistics
Matches: 116, Mismatches: 19, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
46 15 0.13
47 50 0.43
48 3 0.03
49 4 0.03
50 2 0.02
51 2 0.02
52 4 0.03
53 36 0.31
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.33
Consensus pattern (48 bp):
ATGGCATCAGTGTAATATGTGATTTCTGTATAAGACCATAGCTGAGAT
Found at i:9975438 original size:18 final size:17
Alignment explanation
Indices: 9975417--9975451 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
9975407 TTTTATATTA
*
9975417 TTAATATTTTAATATGTT
1 TTAATAATTTAAT-TGTT
9975435 TTAATAATTTAATTGTT
1 TTAATAATTTAATTGTT
9975452 GAACTTAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (17 bp):
TTAATAATTTAATTGTT
Found at i:9976484 original size:3 final size:3
Alignment explanation
Indices: 9976469--9976530 Score: 56
Period size: 3 Copynumber: 20.3 Consensus size: 3
9976459 CGTATGGAAG
* *
9976469 TAA TAA TAC TAA TAA TAA TATA TAA TAAA TAA TAGA TAA T-A CAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA T-AA TAA TA-A TAA TAA TAA TAA
*
9976516 T-A CAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA T
9976531 GCAATTTAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
2 2 0.04
3 37 0.77
4 9 0.19
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:9976495 original size:19 final size:20
Alignment explanation
Indices: 9976470--9976528 Score: 68
Period size: 19 Copynumber: 3.0 Consensus size: 20
9976460 GTATGGAAGT
9976470 AATAATACTAATAATAATA-
1 AATAATACTAATAATAATAC
* *
9976489 TATAATAAATAATAGATAATAC
1 AATAAT-ACTAATA-ATAATAC
9976511 AATAATAC-AATAATAATA
1 AATAATACTAATAATAATA
9976529 ATGCAATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
19 11 0.33
20 10 0.30
21 7 0.21
22 5 0.15
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (20 bp):
AATAATACTAATAATAATAC
Found at i:9976501 original size:14 final size:13
Alignment explanation
Indices: 9976470--9976530 Score: 56
Period size: 14 Copynumber: 4.7 Consensus size: 13
9976460 GTATGGAAGT
*
9976470 AATAATACTAAT-
1 AATAATAATAATA
9976482 AATAATATATAATA
1 AATAATA-ATAATA
9976496 AATAATAGATAATA
1 AATAATA-ATAATA
*
9976510 CAATAAT-ACAAT-
1 -AATAATAATAATA
9976522 AATAATAAT
1 AATAATAAT
9976531 GCAATTTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
11 6 0.15
12 8 0.20
13 8 0.20
14 13 0.32
15 6 0.15
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (13 bp):
AATAATAATAATA
Found at i:9976507 original size:11 final size:10
Alignment explanation
Indices: 9976469--9976529 Score: 54
Period size: 11 Copynumber: 5.9 Consensus size: 10
9976459 CGTATGGAAG
*
9976469 TAATAAT-AC
1 TAATAATAAA
9976478 TAATAAT-AA
1 TAATAATAAA
9976487 TATATAATAAA
1 TA-ATAATAAA
9976498 TAATAGATAATA
1 TAATA-ATAA-A
*
9976510 CAATAATACAA
1 TAATAATA-AA
9976521 TAATAATAA
1 TAATAATAA
9976530 TGCAATTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
9 10 0.23
10 9 0.20
11 19 0.43
12 6 0.14
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (10 bp):
TAATAATAAA
Found at i:9978493 original size:132 final size:132
Alignment explanation
Indices: 9978145--9979036 Score: 1161
Period size: 132 Copynumber: 6.8 Consensus size: 132
9978135 GTTTCTTCTG
* * * * *
9978145 TCTATTCCACTGTTGCCCCGGG-AGATAGAAATACTGGCTTCAATGTACTCCACTGTAACCTCAA
1 TCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAG
* *
9978209 GGAGGTAAAATCCACCATCTTTGATCTACTCCACTACTGCTTAGGGAGACAATATCTGAAATCTT
65 GGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTT
9978274 CAA
130 CAA
* *
9978277 TCTATTCCACTGTTGCCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCATAG
1 TCTATTCCACTGCTG-CCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAG
*** *
9978342 GGAGGTAAAATATGCCATCTTTGATCTGTTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTT
65 GGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTT
9978407 CAA
130 CAA
* * *
9978410 TCTATTTCGCTGCTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGG
1 TCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGG
*** * * *
9978475 GAGGTAAAATCTGTCATCTTTGATCTGCTCCACTCCTGTTTAGGGAAACAAGATCTGAAATCTTC
66 GAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTC
9978540 AA
131 AA
** * *
9978542 TCTATTCTGCTGCTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGA
1 TCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGG
* ** * * * * * * *
9978607 GATGTAAAATCTGCCGTCTTCGATCTGCTTCGCTA-T-CTATACAGGAAGGCAAGATCTAAAATC
66 GAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCT-T--AGGGAGACAAGATCTGAAATC
*
9978670 TTCAG
128 TTCAA
*
9978675 TCTATTCCACTGTTGCCCA-GGAAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCAC-G
1 TCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAG
* * * *
9978738 ATGAGGTAAAATCCACCATCTTTGATCTACTCCACTACTGCTTGGGGAGGCAAGATCTGAAATCT
65 -GGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCT
9978803 TCAA
129 TCAA
9978807 TCTATTCCACTGCTGCCCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCAC-G
1 TCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAG
* * * *
9978870 ATGAGGTAAAATCCACCATCTTTGATCTACTCCACTACTGCTTGGGGAGGCAAGATCTGAAATCT
65 -GGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCT
9978935 TCAA
129 TCAA
** ** * * * *
9978939 TCTATTCTGCTGCTATCCAGAGAAGT-CAATTACTGTCTTCAATGTACTCCACTGTAACCACAGA
1 TCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGG
9979003 GAGGTAAAATCCACCATCTTTGATCTGCTCCACT
66 GAGGTAAAATCCACCATCTTTGATCTGCTCCACT
9979037 GTCAATGCAG
Statistics
Matches: 683, Mismatches: 65, Indels: 25
0.88 0.08 0.03
Matches are distributed among these distances:
130 1 0.00
131 68 0.10
132 389 0.57
133 219 0.32
134 4 0.01
135 2 0.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (132 bp):
TCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGG
GAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTC
AA
Found at i:9978662 original size:265 final size:263
Alignment explanation
Indices: 9978170--9979036 Score: 1135
Period size: 265 Copynumber: 3.3 Consensus size: 263
9978160 CCCCGGGAGA
* * *
9978170 TAGAAATACTGGCTTCAATGTACTCCACTGTAACCTCAAGGAGGTAAAATCCACCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATC
* *
9978235 TACTCCACTACTGCTTAGGGAGACAATATCTGAAATCTTCAATCTATTCCACTGTTGCCCCAGGG
66 TACTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTG-CCCAGGG
* * *
9978300 AAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCATAGGGAGGTAAAATATGCCATCTTTG
130 AAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCTGCCATCTTTG
*
9978365 ATCTG-TTCC-A-CTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTTCGCTGCTGTC
195 ATCTGCTTCCTATCTA-T-C--AGGGAGGCAAGATCTGAAATCTTCAATCTATTTCGCTGCTGTC
9978427 CAGGGAAG
256 CAGGGAAG
***
9978435 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATC
* * * * ** *
9978500 TGCTCCACTCCTGTTTAGGGAAACAAGATCTGAAATCTTCAATCTATTCTGCTGCTGTCCAGGGA
66 TACTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
* * *
9978565 AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGATGTAAAATCTGCCGTCTTCGA
131 AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCTGCCATCTTTGA
* * * * * * *
9978630 TCTGCTTCGCTATCTATACAGGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGTTGCCCA-
196 TCTGCTTC-CTATCTAT-CAGGGAGGCAAGATCTGAAATCTTCAATCTATTTCGCTGCTGTCCAG
9978694 GGAAG
259 GGAAG
*
9978699 ATAGAATTACTGGCTTCAATGTACTCCACTGTAACCAC-GATGAGGTAAAATCCACCATCTTTGA
1 -TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAG-GGAGGTAAAATCCACCATCTTTGA
* *
9978763 TCTACTCCACTACTGCTTGGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
64 TCTACTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
**
9978828 G-AGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCAC-GATGAGGTAAAATCCACCATCT
129 GAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGA-GAGGTAAAATCTGCCATCT
* * *
9978891 TTGATCTACTCCACTACTGCT-T-GGGGAGGCAAGATCTGAAATCTTCAATCTA-TTCTGCTGCT
192 TTGATCTGCTTC-CTA-T-CTATCAGGGAGGCAAGATCTGAAATCTTCAATCTATTTC-GCTGCT
* *
9978953 ATCCAGAGAAG
253 GTCCAGGGAAG
* * *
9978964 T-CAATTACTGTCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCCACCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATC
*
9979028 TGCTCCACT
66 TACTCCACT
9979037 GTCAATGCAG
Statistics
Matches: 524, Mismatches: 65, Indels: 28
0.85 0.11 0.05
Matches are distributed among these distances:
263 68 0.13
264 115 0.22
265 330 0.63
266 3 0.01
267 5 0.01
268 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (263 bp):
TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTTGATC
TACTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCTGCCATCTTTGA
TCTGCTTCCTATCTATCAGGGAGGCAAGATCTGAAATCTTCAATCTATTTCGCTGCTGTCCAGGG
AAG
Done.