Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 33 of 205
Found at i:9978878 original size:397 final size:397
Alignment explanation
Indices: 9978170--9979059 Score: 1240
Period size: 397 Copynumber: 2.2 Consensus size: 397
9978160 CCCCGGGAGA
* *
9978170 TAGAAATACTGGCTTCAATGTACTCCACTGTAACCTCA-AGGAGGTAAAATCCACCATCTTTGAT
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGA-GAGGTAAAATCCACCATCTTTGAT
* * * * *
9978234 CTACTCCACTACTGCT-T-AGGGAGACAATATCTGAAATCTTCAATCTATTCCACTGTTGCCCCA
65 CTGCTCCACTA-T-CTATCAGGAAGGCAAGATCTAAAATCTTCAATCTATTCCACTGTTGCCCCA
* **
9978297 GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCATAGGGAGGTAAAATATGCCATCT
128 GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCAGAGGGAGGTAAAATACACCATCT
** * * *
9978362 TTGATCTGTTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTTCGCTGCTGTC
193 TTGATCTACTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
***
9978427 CAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCAT
258 CAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCAT
* * * *
9978492 CTTTGATCTGCTCCACTCCTGTTTAGGGAAACAAGATCTGAAATCTTCAATCTATTCTGCTGCTG
323 CTTTGATCTACTCCACTACTGCTTAGGGAAACAAGATCTGAAATCTTCAATCTATTCTGCTGCTA
*
9978557 TCCAGGGAAG
388 TCCAGAGAAG
* ** * *
9978567 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGATGTAAAATCTGCCGTCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCCACCATCTTTGATC
* * *
9978632 TGCTTCGCTATCTATACAGGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGTTG-CCCA-G
66 TGCTCCACTATCTAT-CAGGAAGGCAAGATCTAAAATCTTCAATCTATTCCACTGTTGCCCCAGG
* *
9978695 GAAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACGA-TGAGGTAAAATCCACCATCT
130 GAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCA-GAGGGAGGTAAAATACACCATCT
* *
9978759 TTGATCTACTCCACTACTGCTTGGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
193 TTGATCTACTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
*
9978824 CAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCAC-GATGAGGTAAAATCCACC
258 CAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAG-GGAGGTAAAATCCACC
* **
9978887 ATCTTTGATCTACTCCACTACTGCTTGGGGAGGCAAGATCTGAAATCTTCAATCTATTCTGCTGC
321 ATCTTTGATCTACTCCACTACTGCTTAGGGAAACAAGATCTGAAATCTTCAATCTATTCTGCTGC
9978952 TATCCAGAGAAG
386 TATCCAGAGAAG
* *
9978964 T-CAATTACTGTCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCCACCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCCACCATCTTTGATC
* * *
9979028 TGCTCCACTGTCAATGCAGAAAGGCAAGATCT
66 TGCTCCACTATCTAT-CAGGAAGGCAAGATCT
9979060 GCTAGCATCA
Statistics
Matches: 433, Mismatches: 52, Indels: 17
0.86 0.10 0.03
Matches are distributed among these distances:
395 2 0.00
396 92 0.21
397 301 0.70
398 38 0.09
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (397 bp):
TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCCACCATCTTTGATC
TGCTCCACTATCTATCAGGAAGGCAAGATCTAAAATCTTCAATCTATTCCACTGTTGCCCCAGGG
AAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCAGAGGGAGGTAAAATACACCATCTTTG
ATCTACTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAG
GGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTT
TGATCTACTCCACTACTGCTTAGGGAAACAAGATCTGAAATCTTCAATCTATTCTGCTGCTATCC
AGAGAAG
Found at i:9981289 original size:19 final size:19
Alignment explanation
Indices: 9981265--9981304 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
9981255 GGTTTAGCAG
9981265 AAAAAATCCAAAAGAATGA
1 AAAAAATCCAAAAGAATGA
**
9981284 AAAAAATCGTAAAGAATGA
1 AAAAAATCCAAAAGAATGA
9981303 AA
1 AA
9981305 GAACATTTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.68, C:0.07, G:0.12, T:0.12
Consensus pattern (19 bp):
AAAAAATCCAAAAGAATGA
Found at i:9984840 original size:3 final size:3
Alignment explanation
Indices: 9984825--9984886 Score: 56
Period size: 3 Copynumber: 20.3 Consensus size: 3
9984815 CGTATGGAAG
* *
9984825 TAA TAA TAC TAA TAA TAA TATA TAA TAAA TAA TAGA TAA T-A CAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA T-AA TAA TA-A TAA TAA TAA TAA
*
9984872 T-A CAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA T
9984887 GCAATTTAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
2 2 0.04
3 37 0.77
4 9 0.19
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:9984851 original size:19 final size:20
Alignment explanation
Indices: 9984826--9984884 Score: 68
Period size: 19 Copynumber: 3.0 Consensus size: 20
9984816 GTATGGAAGT
9984826 AATAATACTAATAATAATA-
1 AATAATACTAATAATAATAC
* *
9984845 TATAATAAATAATAGATAATAC
1 AATAAT-ACTAATA-ATAATAC
9984867 AATAATAC-AATAATAATA
1 AATAATACTAATAATAATA
9984885 ATGCAATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
19 11 0.33
20 10 0.30
21 7 0.21
22 5 0.15
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (20 bp):
AATAATACTAATAATAATAC
Found at i:9984857 original size:14 final size:13
Alignment explanation
Indices: 9984826--9984886 Score: 56
Period size: 14 Copynumber: 4.7 Consensus size: 13
9984816 GTATGGAAGT
*
9984826 AATAATACTAAT-
1 AATAATAATAATA
9984838 AATAATATATAATA
1 AATAATA-ATAATA
9984852 AATAATAGATAATA
1 AATAATA-ATAATA
*
9984866 CAATAAT-ACAAT-
1 -AATAATAATAATA
9984878 AATAATAAT
1 AATAATAAT
9984887 GCAATTTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
11 6 0.15
12 8 0.20
13 8 0.20
14 13 0.32
15 6 0.15
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (13 bp):
AATAATAATAATA
Found at i:9984863 original size:11 final size:10
Alignment explanation
Indices: 9984825--9984885 Score: 54
Period size: 11 Copynumber: 5.9 Consensus size: 10
9984815 CGTATGGAAG
*
9984825 TAATAAT-AC
1 TAATAATAAA
9984834 TAATAAT-AA
1 TAATAATAAA
9984843 TATATAATAAA
1 TA-ATAATAAA
9984854 TAATAGATAATA
1 TAATA-ATAA-A
*
9984866 CAATAATACAA
1 TAATAATA-AA
9984877 TAATAATAA
1 TAATAATAA
9984886 TGCAATTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
9 10 0.23
10 9 0.20
11 19 0.43
12 6 0.14
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (10 bp):
TAATAATAAA
Found at i:10002379 original size:42 final size:44
Alignment explanation
Indices: 10002330--10002417 Score: 144
Period size: 42 Copynumber: 2.0 Consensus size: 44
10002320 TTTGAATGTT
10002330 TCGTTATAGAATATGTATATG-TTTTTTT-ATTTTTTGGTTTAA
1 TCGTTATAGAATATGTATATGTTTTTTTTAATTTTTTGGTTTAA
10002372 TCGTTATAGAATATGTATATGTTTTTTTTTTAATTTTTTGGTTTAA
1 TCGTTATAGAATATGTATATG--TTTTTTTTAATTTTTTGGTTTAA
10002418 ACTATGGTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
42 21 0.50
45 7 0.17
46 14 0.33
ACGTcount: A:0.24, C:0.02, G:0.14, T:0.60
Consensus pattern (44 bp):
TCGTTATAGAATATGTATATGTTTTTTTTAATTTTTTGGTTTAA
Found at i:10004416 original size:114 final size:114
Alignment explanation
Indices: 10004216--10004439 Score: 448
Period size: 114 Copynumber: 2.0 Consensus size: 114
10004206 GTCATCTCTG
10004216 TTTTCTTTTAGACACTAGATGAGCAACATAGGACTTCAACTGCCAGGAACTCCCAATAATAGGTG
1 TTTTCTTTTAGACACTAGATGAGCAACATAGGACTTCAACTGCCAGGAACTCCCAATAATAGGTG
10004281 TCTTTATTAGGCTGTACGGATTAGCTAATGCAAAACCTTCTTTCCTTTT
66 TCTTTATTAGGCTGTACGGATTAGCTAATGCAAAACCTTCTTTCCTTTT
10004330 TTTTCTTTTAGACACTAGATGAGCAACATAGGACTTCAACTGCCAGGAACTCCCAATAATAGGTG
1 TTTTCTTTTAGACACTAGATGAGCAACATAGGACTTCAACTGCCAGGAACTCCCAATAATAGGTG
10004395 TCTTTATTAGGCTGTACGGATTAGCTAATGCAAAACCTTCTTTCC
66 TCTTTATTAGGCTGTACGGATTAGCTAATGCAAAACCTTCTTTCC
10004440 GTACATAGGA
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 110 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (114 bp):
TTTTCTTTTAGACACTAGATGAGCAACATAGGACTTCAACTGCCAGGAACTCCCAATAATAGGTG
TCTTTATTAGGCTGTACGGATTAGCTAATGCAAAACCTTCTTTCCTTTT
Found at i:10006618 original size:17 final size:16
Alignment explanation
Indices: 10006585--10006623 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
10006575 ATTTGTTATA
*
10006585 ATTTATAAAAAATATTT
1 ATTT-TAAAAAAAATTT
10006602 ATTTTAAAATAAAATTT
1 ATTTTAAAA-AAAATTT
10006619 ATTTT
1 ATTTT
10006624 CCCGAGTGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTTAAAAAAAATTT
Found at i:10008751 original size:26 final size:26
Alignment explanation
Indices: 10008715--10008766 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
10008705 GTCTCCTTAC
10008715 CAACTTGGAACGTGTAAGGAGAGGCA
1 CAACTTGGAACGTGTAAGGAGAGGCA
10008741 CAACTTGGAACGTGTAAGGAGAGGCA
1 CAACTTGGAACGTGTAAGGAGAGGCA
10008767 TTGGACAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.15, G:0.35, T:0.15
Consensus pattern (26 bp):
CAACTTGGAACGTGTAAGGAGAGGCA
Found at i:10014780 original size:43 final size:43
Alignment explanation
Indices: 10014719--10014806 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
10014709 TTTCAAAGTC
10014719 ACGTCACTGCTGCTGTCTGAAATCTGTTTCATTGCAAATTTTT
1 ACGTCACTGCTGCTGTCTGAAATCTGTTTCATTGCAAATTTTT
10014762 ACGTCACTGCTGCTGTCTGAAATCTGTTTCATTGCAAATTTTT
1 ACGTCACTGCTGCTGTCTGAAATCTGTTTCATTGCAAATTTTT
10014805 AC
1 AC
10014807 TTTTTCACAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (43 bp):
ACGTCACTGCTGCTGTCTGAAATCTGTTTCATTGCAAATTTTT
Found at i:10015558 original size:50 final size:50
Alignment explanation
Indices: 10015483--10015691 Score: 265
Period size: 50 Copynumber: 4.1 Consensus size: 50
10015473 NNNNGAGAGT
* * **
10015483 TCTCATATCGGTGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATATCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
* *
10015533 TCTCATCTTGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATATCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
* *
10015583 TCTCATATCGGTGCCAACACCATGTCTCAGACATGGTCTTACATGGGACC
1 TCTCATATCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
* * *
10015633 TCTCATAACCTCAATGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
1 TCTCAT-A--TC---GGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
10015689 TCT
1 TCT
10015692 TTACCCAAAT
Statistics
Matches: 138, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
50 96 0.70
51 1 0.01
53 2 0.01
56 39 0.28
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (50 bp):
TCTCATATCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
Found at i:10021621 original size:15 final size:15
Alignment explanation
Indices: 10021601--10021639 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
10021591 CACAATCGCA
*
10021601 ACAAGTAATAAAGTG
1 ACAAGTAAAAAAGTG
10021616 ACAAGTAAAAAAGTG
1 ACAAGTAAAAAAGTG
10021631 ACAAGTAAA
1 ACAAGTAAA
10021640 TGTCGTGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.59, C:0.08, G:0.18, T:0.15
Consensus pattern (15 bp):
ACAAGTAAAAAAGTG
Found at i:10022345 original size:2 final size:2
Alignment explanation
Indices: 10022338--10022384 Score: 51
Period size: 2 Copynumber: 23.5 Consensus size: 2
10022328 GAGTAAGTAA
* *
10022338 AT AT AT AT AT GT AT AT AT AT AT AT GA- AA AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT
*
10022380 GT AT A
1 AT AT A
10022385 AGTATGTAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
1 1 0.03
2 36 0.95
3 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (2 bp):
AT
Found at i:10022368 original size:28 final size:29
Alignment explanation
Indices: 10022336--10022400 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 29
10022326 GAGAGTAAGT
*
10022336 AAATATATATATGTATATATATA-TATG-A
1 AAATATATATATATATATATA-AGTATGTA
*
10022364 AAATATATATATATATGTATAAGTATGTA
1 AAATATATATATATATATATAAGTATGTA
10022393 AAAT-TATA
1 AAATATATA
10022401 AAATATAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 1 0.03
28 27 0.82
29 5 0.15
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.42
Consensus pattern (29 bp):
AAATATATATATATATATATAAGTATGTA
Found at i:10022384 original size:14 final size:14
Alignment explanation
Indices: 10022336--10022375 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
10022326 GAGAGTAAGT
*
10022336 AAATATATATATGT
1 AAATATATATATGA
*
10022350 ATATATATATATGA
1 AAATATATATATGA
10022364 AAATATATATAT
1 AAATATATATAT
10022376 ATATGTATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (14 bp):
AAATATATATATGA
Found at i:10022873 original size:55 final size:59
Alignment explanation
Indices: 10022811--10022940 Score: 169
Period size: 65 Copynumber: 2.2 Consensus size: 59
10022801 ACACAAATTA
10022811 TAAAATATATA-A-AAT-TATGAGTACAAAGTTAAAACATATAAAAACATAAAGGTAGG
1 TAAAATATATATACAATATATGAGTACAAAGTTAAAACATATAAAAACATAAAGGTAGG
*
10022867 TAAATATATGTATATGTACCAATATATGCGTACAAAGTTAAAACATATAAAAACATAAAGGTAGG
1 TAAA-ATA--TATA--TA-CAATATATGAGTACAAAGTTAAAACATATAAAAACATAAAGGTAGG
10022932 T-AAATATAT
1 TAAAATATAT
10022941 GTATATTTAT
Statistics
Matches: 64, Mismatches: 1, Indels: 13
0.82 0.01 0.17
Matches are distributed among these distances:
56 4 0.06
57 3 0.05
59 4 0.06
61 3 0.05
62 1 0.02
63 3 0.05
64 5 0.08
65 41 0.64
ACGTcount: A:0.53, C:0.07, G:0.12, T:0.28
Consensus pattern (59 bp):
TAAAATATATATACAATATATGAGTACAAAGTTAAAACATATAAAAACATAAAGGTAGG
Found at i:10026753 original size:43 final size:43
Alignment explanation
Indices: 10026657--10026797 Score: 176
Period size: 43 Copynumber: 3.3 Consensus size: 43
10026647 TTACGAAAAT
* **** *
10026657 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGC-TTAAAAAA
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTCTTCAC
* *
10026699 AAGACGTCGCTAAAGATCATGTTCTTTAGCGGGGCTTTCTTCAC
1 AA-ACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTCTTCAC
*
10026743 AAACGCCGCTAAAGATCATATTCTTTAGCGGCGCTTTCTTCAC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTCTTCAC
*
10026786 AAACGCCACTAA
1 AAACGCCGCTAA
10026798 TTTTGGGATT
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
42 2 0.02
43 78 0.92
44 5 0.06
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTCTTCAC
Found at i:10027194 original size:21 final size:21
Alignment explanation
Indices: 10027170--10027237 Score: 109
Period size: 21 Copynumber: 3.2 Consensus size: 21
10027160 TTCTTTTGAA
10027170 CCTCTGCTTCCCTCGCTACCG
1 CCTCTGCTTCCCTCGCTACCG
* * *
10027191 CCTCTACTTCTCTCGCTACAG
1 CCTCTGCTTCCCTCGCTACCG
10027212 CCTCTGCTTCCCTCGCTACCG
1 CCTCTGCTTCCCTCGCTACCG
10027233 CCTCT
1 CCTCT
10027238 ACTTTAAGTT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.07, C:0.50, G:0.12, T:0.31
Consensus pattern (21 bp):
CCTCTGCTTCCCTCGCTACCG
Found at i:10029100 original size:25 final size:25
Alignment explanation
Indices: 10029069--10029642 Score: 166
Period size: 25 Copynumber: 21.7 Consensus size: 25
10029059 ATTTTTCTCA
10029069 ATGTAAGTTATGTATTAAGTAAATT
1 ATGTAAGTTATGTATTAAGTAAATT
*
10029094 ATGTAAGTTATGTATATATTA-TAAAAGAT
1 ATGTAAGTTATGTAT-TA--AGT-AAA-TT
* *
10029123 ATGTAAGTTATGTATTATGTAAGTT
1 ATGTAAGTTATGTATTAAGTAAATT
* *
10029148 ATATAAGTTATGTAGGTTATGT--ATT
1 ATGTAAGTTATGTA--TTAAGTAAATT
* *
10029173 ATGTAAGTTATATAAGCTATGTCAGT-TATT
1 ATGTAAG-T-TAT--G-TAT-TAAGTAAATT
10029203 ATGTAAGTTATGTATTAAGTAAATT
1 ATGTAAGTTATGTATTAAGTAAATT
* *
10029228 ATATAAGTTATGTAGGTTATGT--ATT
1 ATGTAAGTTATGTA--TTAAGTAAATT
*
10029253 ATGTAAGTTATATAAGCTATGTAAGT-TATT
1 ATGTAAG-T-TAT--G-TAT-TAAGTAAATT
* **
10029283 ATGTAAGTTAAGATATAATATATGTTGATT
1 ATGTAAGTTATG-TAT--TA-A-GTAAATT
* * *
10029313 ATGT-A-TTAAGTAAATTATGTAAGTT
1 ATGTAAGTTATGT--ATTAAGTAAATT
* *
10029338 ATGT-A-TTACGTAAGTTATA-TAAGTT
1 ATGTAAGTTATGT-A-TTA-AGTAAATT
* * * *
10029363 ATGTAAGTTATATAAGCTATGTAAGTT
1 ATGTAAGTTATGT-A-TTAAGTAAATT
* * *
10029390 AT-TATGTAAT-AAGTTAAGGTATAATAT
1 ATGTAAGTTATGTA-TTAA-GTA-AAT-T
10029417 ATGTAAGTTATGTATTAAGTAAATT
1 ATGTAAGTTATGTATTAAGTAAATT
*
10029442 ATGTAAGTTATGTATATATTA-TAAAAGAT
1 ATGTAAGTTATGTAT-TA--AGT-AAA-TT
* *
10029471 ATGTAAGTTATGTATTATGTAAGTT
1 ATGTAAGTTATGTATTAAGTAAATT
* *
10029496 ATATAAGTTATGTAGGTTATGT--ATT
1 ATGTAAGTTATGTA--TTAAGTAAATT
*
10029521 ATGTAAGTTATATAAGCTATGTAAGT-TATT
1 ATGTAAG-T-TAT--G-TAT-TAAGTAAATT
*
10029551 ATGTAAGTTATGTATTATA-TAAGTT
1 ATGTAAGTTATGTATTA-AGTAAATT
* *
10029576 ATGT-A-TTATGTAAGTTATGT-ATTT
1 ATGTAAGTTATGT-A-TTAAGTAAATT
* * *
10029600 ATTTAAGTTATGTATTATGTAAGTT
1 ATGTAAGTTATGTATTAAGTAAATT
* *
10029625 ATATAAGTTATATATTAA
1 ATGTAAGTTATGTATTAA
10029643 AATAAAATAG
Statistics
Matches: 430, Mismatches: 55, Indels: 128
0.70 0.09 0.21
Matches are distributed among these distances:
23 6 0.01
24 27 0.06
25 167 0.39
26 35 0.08
27 58 0.13
28 39 0.09
29 55 0.13
30 43 0.10
ACGTcount: A:0.37, C:0.01, G:0.17, T:0.45
Consensus pattern (25 bp):
ATGTAAGTTATGTATTAAGTAAATT
Found at i:10029143 original size:16 final size:16
Alignment explanation
Indices: 10029122--10029626 Score: 283
Period size: 16 Copynumber: 30.8 Consensus size: 16
10029112 TTATAAAAGA
10029122 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
10029138 TATGTAAGTTATATAAGT
1 TATGTAAGTTATGT-A-T
*
10029156 TATGTAGGTTATGTAT
1 TATGTAAGTTATGTAT
10029172 TATGTAAGTTA--TA-
1 TATGTAAGTTATGTAT
* * *
10029185 TAAGCTATGTCA-GTTAT
1 TATG-TAAGTTATG-TAT
10029202 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
* * *
10029218 TAAGTAAATTATATAAGT
1 TATGTAAGTTATGT-A-T
*
10029236 TATGTAGGTTATGTAT
1 TATGTAAGTTATGTAT
* *
10029252 TATGTAAGTTATATAAGC
1 TATGTAAGTTATGT-A-T
10029270 TATGTAAG---T-TAT
1 TATGTAAGTTATGTAT
*
10029282 TATGTAAGTTAAGATAT
1 TATGTAAGTTATG-TAT
* * *
10029299 AATATATGTTGAT-TAT
1 TATGTAAGTT-ATGTAT
*
10029315 GTAT-TAAG-TA--AAT
1 -TATGTAAGTTATGTAT
10029328 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
* *
10029344 TACGTAAGTTATATAAGT
1 TATGTAAGTTATGT-A-T
* *
10029362 TATGTAAGTTATATAAGC
1 TATGTAAGTTATGT-A-T
10029380 TATGTAAGTTAT-TAT
1 TATGTAAGTTATGTAT
* *
10029395 GTAATAAGTTAAGGTAT-AAT
1 -T-AT--G-TAAGTTATGTAT
10029415 ATATGTAAGTTATGTAT
1 -TATGTAAGTTATGTAT
* *
10029432 TAAGTAAATTATGTAAGT
1 TATGTAAGTTATGT-A-T
* ** *
10029450 TATGTATATATTATAAAAGA
1 TATGTA-A-GTTAT-GTA-T
10029470 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
10029486 TATGTAAGTTATATAAGT
1 TATGTAAGTTATGT-A-T
*
10029504 TATGTAGGTTATGTAT
1 TATGTAAGTTATGTAT
* *
10029520 TATGTAAGTTATATAAGC
1 TATGTAAGTTATGT-A-T
10029538 TATGTAAG---T-TAT
1 TATGTAAGTTATGTAT
10029550 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
10029566 TATATAAGTTATGTAT
1 TATGTAAGTTATGTAT
10029582 TATGTAAGTTATGTATT
1 TATGTAAGTTATGTA-T
*
10029599 TATTTAAGTTATGTAT
1 TATGTAAGTTATGTAT
10029615 TATGTAAGTTAT
1 TATGTAAGTTAT
10029627 ATAAGTTATA
Statistics
Matches: 384, Mismatches: 61, Indels: 88
0.72 0.11 0.17
Matches are distributed among these distances:
12 19 0.05
13 11 0.03
14 12 0.03
15 4 0.01
16 169 0.44
17 48 0.12
18 93 0.24
19 5 0.01
20 23 0.06
ACGTcount: A:0.36, C:0.01, G:0.17, T:0.46
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:10029232 original size:80 final size:80
Alignment explanation
Indices: 10029122--10029292 Score: 315
Period size: 80 Copynumber: 2.1 Consensus size: 80
10029112 TTATAAAAGA
* *
10029122 TATGTAAGTTATGTATTATGTAAGTTATATAAGTTATGTAGGTTATGTATTATGTAAGTTATATA
1 TATGTAAGTTATGTATTAAGTAAATTATATAAGTTATGTAGGTTATGTATTATGTAAGTTATATA
*
10029187 AGCTATGTCAGTTAT
66 AGCTATGTAAGTTAT
10029202 TATGTAAGTTATGTATTAAGTAAATTATATAAGTTATGTAGGTTATGTATTATGTAAGTTATATA
1 TATGTAAGTTATGTATTAAGTAAATTATATAAGTTATGTAGGTTATGTATTATGTAAGTTATATA
10029267 AGCTATGTAAGTTAT
66 AGCTATGTAAGTTAT
10029282 TATGTAAGTTA
1 TATGTAAGTTA
10029293 AGATATAATA
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 88 1.00
ACGTcount: A:0.35, C:0.02, G:0.18, T:0.46
Consensus pattern (80 bp):
TATGTAAGTTATGTATTAAGTAAATTATATAAGTTATGTAGGTTATGTATTATGTAAGTTATATA
AGCTATGTAAGTTAT
Found at i:10029330 original size:101 final size:106
Alignment explanation
Indices: 10029202--10029497 Score: 358
Period size: 113 Copynumber: 2.8 Consensus size: 106
10029192 TGTCAGTTAT
* *
10029202 TATGTAAGTTATGTATTAAGTAAATTATATAAGTTATGTA-G-GTTATGT-A-TTATGTAAGTTA
1 TATGTAAGTTATGTATTAAGTAAATTATGTAAGTTATGTACGAGTTATATAAGTTATGTAAGTTA
10029263 TATAAGCTATGTAAGTTATTATG-TAAGTTAAGATATAATA
66 TATAAGCTATGTAAGTTATTATGATAAGTTAAGATATAATA
*
10029303 TATGT-TGATTATGTATTAAGTAAATTATGTAAGTTATGTATTACGTAAGTTATATAAGTTATGT
1 TATGTAAG-TTATGTATTAAGTAAATTATGTAAGTTATG---TACG--AGTTATATAAGTTATGT
*
10029367 AAGTTATATAAGCTATGTAAGTTATTATGTAATAAGTTAAGGTATAATA
60 AAGTTATATAAGCTATGTAAGTTATTATG--ATAAGTTAAGATATAATA
* * * *
10029416 TATGTAAGTTATGTATTAAGTAAATTATGTAAGTTATGTA-TATATTATAAAAGATATGTAAGTT
1 TATGTAAGTTATGTATTAAGTAAATTATGTAAGTTATGTACGA-GTTATATAAGTTATGTAAGTT
* *
10029480 ATGT-A-TTATGTAAGTTAT
65 ATATAAGCTATGTAAGTTAT
10029498 ATAAGTTATG
Statistics
Matches: 169, Mismatches: 11, Indels: 25
0.82 0.05 0.12
Matches are distributed among these distances:
100 1 0.01
101 34 0.20
104 2 0.01
105 1 0.01
106 12 0.07
107 2 0.01
108 27 0.16
109 1 0.01
110 37 0.22
113 51 0.30
114 1 0.01
ACGTcount: A:0.39, C:0.01, G:0.17, T:0.44
Consensus pattern (106 bp):
TATGTAAGTTATGTATTAAGTAAATTATGTAAGTTATGTACGAGTTATATAAGTTATGTAAGTTA
TATAAGCTATGTAAGTTATTATGATAAGTTAAGATATAATA
Found at i:10029638 original size:9 final size:9
Alignment explanation
Indices: 10029069--10029635 Score: 341
Period size: 9 Copynumber: 64.2 Consensus size: 9
10029059 ATTTTTCTCA
10029069 ATGTAAGTT
1 ATGTAAGTT
10029078 ATGT-A-TT
1 ATGTAAGTT
* *
10029085 AAGTAAATT
1 ATGTAAGTT
10029094 ATGTAAGTT
1 ATGTAAGTT
*
10029103 ATGTATATATT
1 ATGTA-A-GTT
** *
10029114 ATAAAAGAT
1 ATGTAAGTT
10029123 ATGTAAGTT
1 ATGTAAGTT
10029132 ATGT-A-TT
1 ATGTAAGTT
10029139 ATGTAAGTT
1 ATGTAAGTT
*
10029148 ATATAAGTT
1 ATGTAAGTT
*
10029157 ATGTAGGTT
1 ATGTAAGTT
10029166 ATGT-A-TT
1 ATGTAAGTT
10029173 ATGTAAGTT
1 ATGTAAGTT
* *
10029182 ATATAAGCT
1 ATGTAAGTT
*
10029191 ATGTCAGTTATT
1 ATGTAAG---TT
10029203 ATGTAAGTT
1 ATGTAAGTT
10029212 ATGT-A-TT
1 ATGTAAGTT
* *
10029219 AAGTAAATT
1 ATGTAAGTT
*
10029228 ATATAAGTT
1 ATGTAAGTT
*
10029237 ATGTAGGTT
1 ATGTAAGTT
10029246 ATGT-A-TT
1 ATGTAAGTT
10029253 ATGTAAGTT
1 ATGTAAGTT
* *
10029262 ATATAAGCT
1 ATGTAAGTT
10029271 ATGTAAGTTATT
1 ATGTAAG---TT
10029283 ATGTAAGTT
1 ATGTAAGTT
* *
10029292 AAGATATAATAT
1 ATG-TA-AGT-T
*
10029304 ATGT-TGATT
1 ATGTAAG-TT
10029313 ATGT-A-TT
1 ATGTAAGTT
* *
10029320 AAGTAAATT
1 ATGTAAGTT
10029329 ATGTAAGTT
1 ATGTAAGTT
10029338 ATGT-A-TT
1 ATGTAAGTT
*
10029345 ACGTAAGTT
1 ATGTAAGTT
*
10029354 ATATAAGTT
1 ATGTAAGTT
10029363 ATGTAAGTT
1 ATGTAAGTT
* *
10029372 ATATAAGCT
1 ATGTAAGTT
10029381 ATGTAAGTT
1 ATGTAAGTT
*
10029390 AT-TATG-T
1 ATGTAAGTT
*
10029397 A-ATAAGTT
1 ATGTAAGTT
* *
10029405 AAGGTATAATAT
1 -ATGTA-AGT-T
10029417 ATGTAAGTT
1 ATGTAAGTT
10029426 ATGT-A-TT
1 ATGTAAGTT
* *
10029433 AAGTAAATT
1 ATGTAAGTT
10029442 ATGTAAGTT
1 ATGTAAGTT
*
10029451 ATGTATATATT
1 ATGTA-A-GTT
** *
10029462 ATAAAAGAT
1 ATGTAAGTT
10029471 ATGTAAGTT
1 ATGTAAGTT
10029480 ATGT-A-TT
1 ATGTAAGTT
10029487 ATGTAAGTT
1 ATGTAAGTT
*
10029496 ATATAAGTT
1 ATGTAAGTT
*
10029505 ATGTAGGTT
1 ATGTAAGTT
10029514 ATGT-A-TT
1 ATGTAAGTT
10029521 ATGTAAGTT
1 ATGTAAGTT
* *
10029530 ATATAAGCT
1 ATGTAAGTT
10029539 ATGTAAGTTATT
1 ATGTAAG---TT
10029551 ATGTAAGTT
1 ATGTAAGTT
10029560 ATGT-A-TT
1 ATGTAAGTT
*
10029567 ATATAAGTT
1 ATGTAAGTT
10029576 ATGT-A-TT
1 ATGTAAGTT
10029583 ATGTAAGTT
1 ATGTAAGTT
*
10029592 ATGT-ATTT
1 ATGTAAGTT
*
10029600 ATTTAAGTT
1 ATGTAAGTT
10029609 ATGT-A-TT
1 ATGTAAGTT
10029616 ATGTAAGTT
1 ATGTAAGTT
*
10029625 ATATAAGTT
1 ATGTAAGTT
10029634 AT
1 AT
10029636 ATATTAAAAT
Statistics
Matches: 427, Mismatches: 81, Indels: 100
0.70 0.13 0.16
Matches are distributed among these distances:
7 77 0.18
8 32 0.07
9 261 0.61
10 11 0.03
11 19 0.04
12 27 0.06
ACGTcount: A:0.37, C:0.01, G:0.17, T:0.45
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:10029806 original size:12 final size:12
Alignment explanation
Indices: 10029789--10029869 Score: 50
Period size: 12 Copynumber: 7.2 Consensus size: 12
10029779 GTAGGCTATG
10029789 TATTATGTAAGT
1 TATTATGTAAGT
10029801 TATTA--TAAGT
1 TATTATGTAAGT
* *
10029811 AAGTTATGAAAGT
1 TA-TTATGTAAGT
* *
10029824 TA-TATATAAAT
1 TATTATGTAAGT
*
10029835 T-TATATATAAG-
1 TAT-TATGTAAGT
10029846 --TTATGTAAGT
1 TATTATGTAAGT
10029856 TATTATGTAAGT
1 TATTATGTAAGT
10029868 TA
1 TA
10029870 ACTGTTGTGT
Statistics
Matches: 53, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
9 7 0.13
10 7 0.13
11 10 0.19
12 24 0.45
13 5 0.09
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.46
Consensus pattern (12 bp):
TATTATGTAAGT
Found at i:10029944 original size:25 final size:25
Alignment explanation
Indices: 10029912--10029972 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
10029902 TAAGTTATGT
* *
10029912 ATGTAAGTTATGTCAA-TTGTGTATA
1 ATGTAAGTTATG-AAATTTATGTATA
*
10029937 ATGTAAGTTATGAAATTTATGTATT
1 ATGTAAGTTATGAAATTTATGTATA
10029962 ATGTAAGTTAT
1 ATGTAAGTTAT
10029973 TTAAGTTAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 2 0.06
25 30 0.94
ACGTcount: A:0.34, C:0.02, G:0.18, T:0.46
Consensus pattern (25 bp):
ATGTAAGTTATGAAATTTATGTATA
Found at i:10029972 original size:9 final size:9
Alignment explanation
Indices: 10029911--10029980 Score: 51
Period size: 9 Copynumber: 8.2 Consensus size: 9
10029901 TTAAGTTATG
10029911 TATGTAAGT
1 TATGTAAGT
10029920 TATGTCAA-T
1 TATGT-AAGT
*
10029929 TGTGT-A-T
1 TATGTAAGT
*
10029936 AATGTAAGT
1 TATGTAAGT
* *
10029945 TATGAAATT
1 TATGTAAGT
10029954 TATGT-A-T
1 TATGTAAGT
10029961 TATGTAAGT
1 TATGTAAGT
*
10029970 TATTTAAGT
1 TATGTAAGT
10029979 TA
1 TA
10029981 AGAAATATAA
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
7 11 0.23
8 3 0.06
9 32 0.67
10 2 0.04
ACGTcount: A:0.34, C:0.01, G:0.17, T:0.47
Consensus pattern (9 bp):
TATGTAAGT
Found at i:10030078 original size:17 final size:16
Alignment explanation
Indices: 10030052--10030086 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 16
10030042 ATAGAATAAT
10030052 CGATATTTATTAAAAC
1 CGATATTTATTAAAAC
10030068 CGATCATTTATTAAAAC
1 CGAT-ATTTATTAAAAC
10030085 CG
1 CG
10030087 TCTTTTTTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (16 bp):
CGATATTTATTAAAAC
Found at i:10030172 original size:22 final size:22
Alignment explanation
Indices: 10030147--10030188 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
10030137 ATCCCCAAAA
10030147 TATATATATTAATACGTTAAAT
1 TATATATATTAATACGTTAAAT
*
10030169 TATATATATTAATATGTTAA
1 TATATATATTAATACGTTAA
10030189 GTAACTACCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (22 bp):
TATATATATTAATACGTTAAAT
Found at i:10030289 original size:83 final size:86
Alignment explanation
Indices: 10030143--10030331 Score: 312
Period size: 83 Copynumber: 2.2 Consensus size: 86
10030133 TTATATCCCC
10030143 AAAATATATATATTAATACGTTAAATTATATATATTAATATGTTAAGTAACTACCGAAATTAAGA
1 AAAA-ATATATATTAATACGTTAAATTATATATATT-ATA--TT-AGTAACTACCGAAATTAAGA
10030208 CTAATATATTAAATAGCTTATATATT
61 CTAATATATTAAATAGCTTATATATT
10030234 AAAAATATATATTAATACGTTAAATTATATATATT-TA-T-GTAACTACCGAAATTAAGACTAAT
1 AAAAATATATATTAATACGTTAAATTATATATATTATATTAGTAACTACCGAAATTAAGACTAAT
10030296 ATATTAAATAGCTTATATATT
66 ATATTAAATAGCTTATATATT
10030317 AAAAATATATATTAA
1 AAAAATATATATTAA
10030332 AAATATATCT
Statistics
Matches: 98, Mismatches: 0, Indels: 8
0.92 0.00 0.08
Matches are distributed among these distances:
83 60 0.61
85 1 0.01
88 2 0.02
90 31 0.32
91 4 0.04
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.39
Consensus pattern (86 bp):
AAAAATATATATTAATACGTTAAATTATATATATTATATTAGTAACTACCGAAATTAAGACTAAT
ATATTAAATAGCTTATATATT
Found at i:10030327 original size:13 final size:13
Alignment explanation
Indices: 10030309--10030339 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
10030299 TTAAATAGCT
10030309 TATATATTAAAAA
1 TATATATTAAAAA
10030322 TATATATTAAAAA
1 TATATATTAAAAA
10030335 TATAT
1 TATAT
10030340 CTATTACTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
TATATATTAAAAA
Found at i:10030358 original size:28 final size:29
Alignment explanation
Indices: 10030327--10030404 Score: 70
Period size: 28 Copynumber: 2.7 Consensus size: 29
10030317 AAAAATATAT
* *
10030327 ATTAAAAATAT-ATCTATTACTACGTTAA
1 ATTAAAAATATAATATATTAATACGTTAA
* *
10030355 ATT-AAATTTTAATATATTAATACGTTAA
1 ATTAAAAATATAATATATTAATACGTTAA
* * *
10030383 ATTATAGATATCAATACATTAA
1 ATTAAAAATAT-AATATATTAA
10030405 GTTACCCAAA
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
27 5 0.13
28 21 0.55
29 3 0.08
30 9 0.24
ACGTcount: A:0.47, C:0.08, G:0.04, T:0.41
Consensus pattern (29 bp):
ATTAAAAATATAATATATTAATACGTTAA
Found at i:10031986 original size:83 final size:86
Alignment explanation
Indices: 10031854--10032016 Score: 217
Period size: 83 Copynumber: 1.9 Consensus size: 86
10031844 TGAAGCTCAC
* * *
10031854 AAACGGCGCCGCATTGGGGAAGTTTATATATAAATAATTGCGGCATTTTCTTAAAAAACGCCACC
1 AAACGGCACCGCATTAGGGAAATTTATATATAAATAATTGCGGCATTTTCTTAAAAAACGCCACC
*
10031919 ATTAAATTATTTTCCAGTACAA
66 ATAAAATT-TTTTCCAGTACAA
* * * *
10031941 AAACGGCACCGCA-TAGGGAAATTTA-AT-T-AATCATTGCGGCGTTTTCTTTAAAAACGCCACT
1 AAACGGCACCGCATTAGGGAAATTTATATATAAATAATTGCGGCATTTTCTTAAAAAACGCCACC
10032002 ATAAAATTTTTTCCA
66 ATAAAATTTTTTCCA
10032017 ACACTGAAAC
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
82 7 0.10
83 36 0.53
84 1 0.01
85 2 0.03
86 10 0.15
87 12 0.18
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (86 bp):
AAACGGCACCGCATTAGGGAAATTTATATATAAATAATTGCGGCATTTTCTTAAAAAACGCCACC
ATAAAATTTTTTCCAGTACAA
Found at i:10032050 original size:83 final size:82
Alignment explanation
Indices: 10031890--10032095 Score: 223
Period size: 83 Copynumber: 2.5 Consensus size: 82
10031880 TATATAAATA
* * * * **
10031890 ATTGCGGCATTTTCTTAAAAAACGCCACCATTAAATTATTTTCCAGTACAAAAACGGCACCGCAT
1 ATTGCGGCGTTTTCTTTAAAAACGCCACTATAAAATT-TTTTCCAACACAAAAACGGCACCGCAT
* * *
10031955 AGGGAAATTTAATTAATC
65 AGGAAAAGTTAATCAATC
** * * *
10031973 ATTGCGGCGTTTTCTTTAAAAACGCCACTATAAAATTTTTTCCAACACTGAAACGTCGCCTCATT
1 ATTGCGGCGTTTTCTTTAAAAACGCCACTATAAAATTTTTTCCAACACAAAAACGGCACCGCA-T
*
10032038 CGGAAAAGTTAATCAATC
65 AGGAAAAGTTAATCAATC
* ** *
10032056 ATTGCGGCGTTTCCCCTAAAAACGCCACTATCAAATTTTT
1 ATTGCGGCGTTTTCTTTAAAAACGCCACTATAAAATTTTT
10032096 ATTACTATTA
Statistics
Matches: 103, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
82 19 0.18
83 84 0.82
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (82 bp):
ATTGCGGCGTTTTCTTTAAAAACGCCACTATAAAATTTTTTCCAACACAAAAACGGCACCGCATA
GGAAAAGTTAATCAATC
Found at i:10032931 original size:15 final size:15
Alignment explanation
Indices: 10032892--10032925 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
10032882 CCCAAACCCC
10032892 AAACCTCAAA-TCTT
1 AAACCTCAAACTCTT
10032906 AAACCTCAAACTCTT
1 AAACCTCAAACTCTT
10032921 AAACC
1 AAACC
10032926 CTAAACCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (15 bp):
AAACCTCAAACTCTT
Found at i:10032936 original size:21 final size:20
Alignment explanation
Indices: 10032877--10032936 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
10032867 TAAAGCGGCC
*
10032877 TAAACCCCAAACCCCAAACCT
1 TAAACCCTAAA-CCCAAACCT
* * *
10032898 CAAATCTTAAACCTCAAACTCT
1 TAAACCCTAAACC-CAAAC-CT
10032920 TAAACCCTAAACCCAAA
1 TAAACCCTAAACCCAAA
10032937 ACACCAAAAC
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
20 2 0.07
21 16 0.53
22 12 0.40
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.17
Consensus pattern (20 bp):
TAAACCCTAAACCCAAACCT
Found at i:10033217 original size:49 final size:49
Alignment explanation
Indices: 10033123--10033217 Score: 113
Period size: 49 Copynumber: 1.9 Consensus size: 49
10033113 CTACATAGTA
* * *
10033123 AACCCTAAACCCTAAACTGTAATCCAAAAATAATAAACATTATATAATG
1 AACCCTAAACCCTAAACTCTAAACCAAAAATAATAAACATAATATAATG
* *
10033172 AACCCTAATACCCTAAAC-CTAAACCAAATATGATAAAC-TAAATATA
1 AACCCTAA-ACCCTAAACTCTAAACCAAAAATAATAAACAT-AATATA
10033218 TAATAACCTA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
48 1 0.03
49 29 0.74
50 9 0.23
ACGTcount: A:0.52, C:0.22, G:0.03, T:0.23
Consensus pattern (49 bp):
AACCCTAAACCCTAAACTCTAAACCAAAAATAATAAACATAATATAATG
Found at i:10033470 original size:115 final size:112
Alignment explanation
Indices: 10033247--10033516 Score: 391
Period size: 115 Copynumber: 2.4 Consensus size: 112
10033237 ATGCATGGTT
* *
10033247 AAGACCAAAACGATGCGTTTTGGTTAAGATATTTTGCGACGCTTCTCAAGCGCCGCTAATACTAT
1 AAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAGCGCCGCTAATACTAT
* * * * * *
10033312 GCTTTAGCGGTGTTTTCTAGTAAGTGCCACTAATTCTAGTATACGTC
66 GCATTAGCGGCGTTTTCCAGTAAGCGCCACTAATTCTAATATACCTC
* *
10033359 AAGACCAAAACGCCGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAGTGCCGCTAATAC
1 AAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCT--C-AAGCGCCGCTAATAC
10033424 TATGCATTAGCGGCGTTTTCCCA-TAAGCGCCACTAATTCTAATATACCTC
63 TATGCATTAGCGGCGTTTT-CCAGTAAGCGCCACTAATTCTAATATACCTC
*
10033474 AAGACC-AAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTT
1 AAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTT
10033517 TGTGCCTTAG
Statistics
Matches: 142, Mismatches: 12, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
112 43 0.30
114 36 0.25
115 61 0.43
116 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (112 bp):
AAGACCAAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAGCGCCGCTAATACTAT
GCATTAGCGGCGTTTTCCAGTAAGCGCCACTAATTCTAATATACCTC
Found at i:10033589 original size:93 final size:92
Alignment explanation
Indices: 10033430--10033700 Score: 420
Period size: 93 Copynumber: 2.9 Consensus size: 92
10033420 ATACTATGCA
*
10033430 TTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTCAAGACCAAACTCTGCGTTTTG
1 TTAGCGGCGTTTTCCCAGAAGCGCCACTAATTCTAATATACCTCAAGACCAAACTCTGCGTTTTG
10033495 GTTAAGATATTTTGCGGCGCTTTGTGCC
66 GTTAAGATATTTTGCGGCGCTTT-TGCC
*
10033523 TTAGCGGCGTTTTCCCAGAAGTGCCACTAATTCTAATATACCTCAAGACCAAACTCTGCGTTTTG
1 TTAGCGGCGTTTTCCCAGAAGCGCCACTAATTCTAATATACCTCAAGACCAAACTCTGCGTTTTG
* *
10033588 GTTAAGATATTTTGCGGTGC-TTTGCT
66 GTTAAGATATTTTGCGGCGCTTTTGCC
* * * *
10033614 TTAGCGGCGTTTT-CCTGTAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGCTGCGTTT
1 TTAGCGGCGTTTTCCCAG-AAGCGCCACTAATTCTAATATACCTCAAGACC-AAACTCTGCGTTT
*
10033678 TGGTTAAGAGATTTTGCGGCGCT
64 TGGTTAAGATATTTTGCGGCGCT
10033701 ATTCACAAAG
Statistics
Matches: 164, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
90 3 0.02
91 45 0.27
92 34 0.21
93 82 0.50
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (92 bp):
TTAGCGGCGTTTTCCCAGAAGCGCCACTAATTCTAATATACCTCAAGACCAAACTCTGCGTTTTG
GTTAAGATATTTTGCGGCGCTTTTGCC
Found at i:10033964 original size:114 final size:114
Alignment explanation
Indices: 10033609--10034043 Score: 505
Period size: 114 Copynumber: 3.8 Consensus size: 114
10033599 TTGCGGTGCT
* ** * *
10033609 TTGCTTTAGCGGCGTTTTCCTGTAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGCTGC
1 TTGCTTTAGCGGCATTTTCCCATATGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGC
* * *
10033674 GTTTTGGTTAAGAGATTTTGCGGCGCTATTCACAAAGCGCCGCTAATAC
66 GTTTTGGTTAAAAAATTTTGCGGCGCTTTTCACAAAGCGCCGCTAATAC
* * * * * *
10033723 TATGCGTTAGCGGCGTTTTCCCATAAGCGCCACTAATTCTAATATACCTAAAGACC-AAACTCTG
1 T-TGCTTTAGCGGCATTTTCCCATATGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTG
* * * * *
10033787 CGTTTTGGTTAATATATTTTACGGCGCTTTTTACAAAGCGCAGCTAATAC
65 CGTTTTGGTTAAAAAATTTTGCGGCGCTTTTCACAAAGCGCCGCTAATAC
** * * *
10033837 TTGCTTTAGCGGCATTTTTTCGTATGCGCCACTAATTCTAATATACATCAAGACCAAAACGATGT
1 TTGCTTTAGCGGCATTTTCCCATATGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGC
* ** * *
10033902 ATTTTCCTTAAAAAATTTTGCGGCGCTTTTCACGAAGCCCCGCTAATAC
66 GTTTTGGTTAAAAAATTTTGCGGCGCTTTTCACAAAGCGCCGCTAATAC
* * * * *
10033951 TTGCTTTAACGGCATTTTCCCATAAT-TGCCACTAATTCTAGTATACATCAAGACCAAAATGTTG
1 TTGCTTTAGCGGCATTTTCCCAT-ATGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTG
* * *
10034015 CGTTTTGGTTAAGAGATTTTGCAGCGCTT
65 CGTTTTGGTTAAAAAATTTTGCGGCGCTT
10034044 GATGGTAAAT
Statistics
Matches: 269, Mismatches: 49, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
113 46 0.17
114 173 0.64
115 50 0.19
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (114 bp):
TTGCTTTAGCGGCATTTTCCCATATGCGCCACTAATTCTAATATACATCAAGACCAAAACGCTGC
GTTTTGGTTAAAAAATTTTGCGGCGCTTTTCACAAAGCGCCGCTAATAC
Found at i:10034019 original size:228 final size:228
Alignment explanation
Indices: 10033609--10034026 Score: 588
Period size: 228 Copynumber: 1.8 Consensus size: 228
10033599 TTGCGGTGCT
* *
10033609 TTGCTTTAGCGGCGTTTTCCTGTAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGCTGC
1 TTGCTTTAGCGGCGTTTTCCTGTAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGATGC
* ** * * * * *
10033674 GTTTTGGTTAAGAGATTTTGCGGCGCTATTCACAAAGCGCCGCTAATACTATGCGTTAGCGGCGT
66 ATTTTCCTTAAAAAATTTTGCGGCGCTATTCACAAAGCCCCGCTAATACTATGCGTTAACGGCAT
* *
10033739 TTTCCCATAAGCGCCACTAATTCTAATATACCTAAAGACCAAACTCTGCGTTTTGGTTAATATAT
131 TTTCCCATAAGCGCCACTAATTCTAATATACATAAAGACCAAAATCTGCGTTTTGGTTAATATAT
10033804 TTTACGGCGCTTTTTACAAAGCGCAGCTAATAC
196 TTTACGGCGCTTTTTACAAAGCGCAGCTAATAC
* * *
10033837 TTGCTTTAGCGGCATTTT-TTCGTATGCGCCACTAATTCTAATATACATCAAGACCAAAACGATG
1 TTGCTTTAGCGGCGTTTTCCT-GTAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGATG
* * * *
10033901 TATTTTCCTTAAAAAATTTTGCGGCGCTTTTCACGAAGCCCCGCTAATACT-TGCTTTAACGGCA
65 CATTTTCCTTAAAAAATTTTGCGGCGCTATTCACAAAGCCCCGCTAATACTATGCGTTAACGGCA
** * * *
10033965 TTTTCCCATAATTGCCACTAATTCTAGTATACATCAAGACCAAAATGTTGCGTTTTGGTTAA
130 TTTTCCCATAAGCGCCACTAATTCTAATATACATAAAGACCAAAAT-CTGCGTTTTGGTTAA
10034027 GAGATTTTGC
Statistics
Matches: 164, Mismatches: 24, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
227 51 0.31
228 113 0.69
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.33
Consensus pattern (228 bp):
TTGCTTTAGCGGCGTTTTCCTGTAAGCGCCACTAATTCTAATATACATCAAGACCAAAACGATGC
ATTTTCCTTAAAAAATTTTGCGGCGCTATTCACAAAGCCCCGCTAATACTATGCGTTAACGGCAT
TTTCCCATAAGCGCCACTAATTCTAATATACATAAAGACCAAAATCTGCGTTTTGGTTAATATAT
TTTACGGCGCTTTTTACAAAGCGCAGCTAATAC
Found at i:10039701 original size:13 final size:13
Alignment explanation
Indices: 10039680--10039711 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
10039670 TTTGATTAAT
*
10039680 TAATGTAATATAA
1 TAATATAATATAA
10039693 TAATATAATATAA
1 TAATATAATATAA
10039706 TAATAT
1 TAATAT
10039712 TTTAATCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (13 bp):
TAATATAATATAA
Found at i:10041582 original size:14 final size:14
Alignment explanation
Indices: 10041565--10041594 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10041555 ATTTTGCTAG
*
10041565 TTTATTTTTATTAT
1 TTTATTGTTATTAT
10041579 TTTATTGTTATTAT
1 TTTATTGTTATTAT
10041593 TT
1 TT
10041595 GGATATTGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (14 bp):
TTTATTGTTATTAT
Found at i:10046766 original size:7 final size:7
Alignment explanation
Indices: 10046754--10046780 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
10046744 TACAAAATTT
10046754 TTCTTTG
1 TTCTTTG
10046761 TTCTTTG
1 TTCTTTG
10046768 TTCTTTG
1 TTCTTTG
10046775 TTCTTT
1 TTCTTT
10046781 TTGCTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.11, T:0.74
Consensus pattern (7 bp):
TTCTTTG
Found at i:10049274 original size:21 final size:21
Alignment explanation
Indices: 10049248--10049291 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
10049238 TGCGTGTATG
10049248 CTCACTAAATTAATTAAGCAA
1 CTCACTAAATTAATTAAGCAA
*
10049269 CTCACTCAATTAATTAAGCAA
1 CTCACTAAATTAATTAAGCAA
10049290 CT
1 CT
10049292 GAATCTTATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.43, C:0.23, G:0.05, T:0.30
Consensus pattern (21 bp):
CTCACTAAATTAATTAAGCAA
Found at i:10053244 original size:34 final size:35
Alignment explanation
Indices: 10053186--10053252 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
10053176 CAAACACCAG
10053186 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
*
10053221 AAAATATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
10053253 TATTTTACTT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:10057196 original size:106 final size:105
Alignment explanation
Indices: 10056927--10057242 Score: 407
Period size: 106 Copynumber: 3.0 Consensus size: 105
10056917 TTTTCTAAAT
*
10056927 AAGGCAATATTTTGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
1 AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
10056992 GTTTGACCAAAATAGCCAAATACCCTTTTTAAACTTTCAAAAT
66 GTTTGA-CAAAATAGCCAAATATCC-TTTTAAA-TTTTAAAAC
* * * * * *
10057035 AAGACCATATTTCGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGAGTACTC
1 AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
10057100 GTTTGGCAAAATAGTCGAATATCCTTTTGAAATTTTAAAAC
66 GTTTGACAAAATAGCCAAATATCCTTTT-AAATTTTAAAAC
* * * * *
10057141 GAGGCAATGTTTTGCGTTTGGAAATTCGAGAGAATGTGCCCTAACGTGCTAGGTTTCGATTTCTC
1 AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
10057206 GTTCGACTAAATAGCCAAATATCCTCTTAAATTTTAA
66 GTTTGACAAAATAGCCAAATATCCTTTTAAATTTTAA
10057243 TCCATGTCGT
Statistics
Matches: 177, Mismatches: 30, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
105 9 0.05
106 87 0.49
107 18 0.10
108 63 0.36
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (105 bp):
AAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
GTTTGACAAAATAGCCAAATATCCTTTTAAATTTTAAAAC
Found at i:10059032 original size:106 final size:104
Alignment explanation
Indices: 10058820--10059139 Score: 406
Period size: 106 Copynumber: 3.0 Consensus size: 104
10058810 ACGACATGGA
* * *
10058820 TTAAAATTTAAGAGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGC
1 TTAAAATTTAAAAGGATATTTGGCTATTTGGTCAAACGAG-AATCGAAACCCAGCACGTTAGGGC
* * * *
10058885 ACATTCTCTCGAATTTCCAAACGCAAAACATTGCCTCATT
65 ACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
* * * *
10058925 TTAAAATTTCAAAAGGATATTCGACTATTTGGCCAAACGAGTAATCGAAACCCAACACGTTAGGG
1 TTAAAATTT-AAAAGGATATTTGGCTATTTGGTCAAACGAG-AATCGAAACCCAGCACGTTAGGG
* * * *
10058990 CACGTTTTCTCAAATTTCCAAACGCGAAATATGGTCTTATT
64 CACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
* *
10059031 TTGAAAGTTTAAAATGGGTATTTGGCTATTTTGGTCAAACGAGATATCGAAACCCAGCACGTTAG
1 TT-AAAATTTAAAA-GGATATTTGGCTA-TTTGGTCAAACGAGA-ATCGAAACCCAGCACGTTAG
* *
10059096 GGCACGTTTTCTCGATTTTCCAAACGTAAAATATTGCCTTATT
62 GGCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
10059139 T
1 T
10059140 AGAAAAATTC
Statistics
Matches: 182, Mismatches: 28, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
105 9 0.05
106 86 0.47
107 17 0.09
108 70 0.38
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (104 bp):
TTAAAATTTAAAAGGATATTTGGCTATTTGGTCAAACGAGAATCGAAACCCAGCACGTTAGGGCA
CGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
Found at i:10061261 original size:22 final size:22
Alignment explanation
Indices: 10061230--10061273 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
10061220 TACACTAAAA
* **
10061230 TAGGCTTTTAGCGGCGTTTTTT
1 TAGGCCTTTAGCAACGTTTTTT
10061252 TAGGCCTTTAGCAACGTTTTTT
1 TAGGCCTTTAGCAACGTTTTTT
10061274 AGTGCAGCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.14, C:0.16, G:0.23, T:0.48
Consensus pattern (22 bp):
TAGGCCTTTAGCAACGTTTTTT
Found at i:10061387 original size:43 final size:43
Alignment explanation
Indices: 10061339--10061607 Score: 358
Period size: 43 Copynumber: 6.3 Consensus size: 43
10061329 TGAAAAAAAT
* *
10061339 GCCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCCACAAAC
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC
* *
10061382 GCCGCTGAAGAACATGACCTTTAGCGGCGCTTTTTCCACAAAC
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * * *
10061425 GCCGCTAAAGAACATGATCTTTAGTGACGCTGTACCCACAAAC
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC
*
10061468 ACCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * **
10061511 GCCGCTAAAGAACTTGACCTTTAGCGACGCTTTTCCTATTAAC
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * * *
10061554 TCCGCTAAAGAACCTGACCTTTAGCGGCACTTTTCCTAAAAAC
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC
10061597 GCCGCTAAAGA
1 GCCGCTAAAGA
10061608 TCATAAAAAA
Statistics
Matches: 196, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 196 1.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (43 bp):
GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:10065129 original size:24 final size:24
Alignment explanation
Indices: 10065082--10065153 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 24
10065072 TCAGTGGAGG
* *
10065082 CAAAAAAAAACCAAAAACACAAAAA
1 CAAAAAAAAAAC-AAAACAAAAAAA
* * *
10065107 CAAAAAACAAACGAGACAAAAAAA
1 CAAAAAAAAAACAAAACAAAAAAA
*
10065131 TAAAAAAAAAACAAAACAAAAAA
1 CAAAAAAAAAACAAAACAAAAAA
10065154 CCTCTACCGG
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
24 28 0.74
25 10 0.26
ACGTcount: A:0.81, C:0.15, G:0.03, T:0.01
Consensus pattern (24 bp):
CAAAAAAAAAACAAAACAAAAAAA
Found at i:10065620 original size:18 final size:17
Alignment explanation
Indices: 10065590--10065623 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
10065580 TCACTCGAAA
*
10065590 AAAAGAAATGAAAAGAC
1 AAAAGAAAAGAAAAGAC
10065607 AAAAGAAAAAGAAAAGA
1 AAAAG-AAAAGAAAAGA
10065624 AGAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (17 bp):
AAAAGAAAAGAAAAGAC
Found at i:10065634 original size:24 final size:23
Alignment explanation
Indices: 10065589--10065641 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 23
10065579 TTCACTCGAA
* * *
10065589 AAAAAGAAATGAAAAGACAAAAG
1 AAAAAGAAAAGAAAACAAAAAAG
10065612 AAAAAGAAAAGAAGAACAAAAAAG
1 AAAAAGAAAAGAA-AACAAAAAAG
10065636 AAAAAG
1 AAAAAG
10065642 GAGAGACCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 12 0.46
24 14 0.54
ACGTcount: A:0.77, C:0.04, G:0.17, T:0.02
Consensus pattern (23 bp):
AAAAAGAAAAGAAAACAAAAAAG
Found at i:10066592 original size:24 final size:24
Alignment explanation
Indices: 10066539--10066598 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
10066529 TTATGTCCCT
*
10066539 AAATTACAGTGGACTGAACCTTGA
1 AAATTACAGTGGACTGAACCTTAA
* * * *
10066563 AGATTATAGTGGATTGAACTTTAA
1 AAATTACAGTGGACTGAACCTTAA
10066587 AAATTACAGTGG
1 AAATTACAGTGG
10066599 GGCAGTTCGG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.30
Consensus pattern (24 bp):
AAATTACAGTGGACTGAACCTTAA
Found at i:10067068 original size:100 final size:100
Alignment explanation
Indices: 10066887--10067555 Score: 895
Period size: 100 Copynumber: 6.7 Consensus size: 100
10066877 TTCCCTAACA
* *
10066887 ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTG-TTCCCTGACATTGCAATTTAAGAA-
1 ATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAA-AAG
* * *
10066950 ATTGAAGCCACAACGGCGAATCTCATTTCCCTGGC-
65 ATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCG
* * * * *
10066985 AGTACAGTGGAGCAGATTAAAGCTACGACGGCAAATCTTGCTTCCCTGATATTGCAATTTAAAAG
1 A-TGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAG
* * *
10067050 ATTGAAGCCACAACGGCGAATCTTACTTCCCAGGTG
65 ATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCG
* * * *
10067086 ATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTT-ATTCCCCGACATTACAATTTAAAAGA
1 ATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGA
**
10067150 TTGAAGCCGCAACGGCGAATCTTACTTCTATGGCG
66 TTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCG
* *
10067185 ATGCAGTGGAGCATATTAAAGCTACAACGGCGAATCTAGCTTCCCCGACATTGCAATTTAAAAGA
1 ATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGA
*
10067250 TTGAAGCCGCAACGGCGAATCTTACTTCCATGGCG
66 TTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCG
* * *
10067285 ATGCAGTGGAGCAGATTAAAGCTAAAATGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGA
1 ATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGA
* * *
10067350 TTAAAGCCGCAACGACAAATCTTACTTCCCTGGCG
66 TTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCG
* * * *
10067385 ATGCAGTGGATCAGATTGAAA-CTAAAACGGTGAATCTTG-TTCCCCGACATTGCAATTAAAAAG
1 ATGCAGTGGAGCAGATT-AAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAG
* *
10067448 ATTGAAGCTGCAACGGCGAATCTTACTTCCCTGG-T
65 ATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCG
* * * *
10067483 AGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATC-TGGTTCCCCGACATTGCAGTTTAAAAA
1 A-TGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTT-AAAA
10067547 GATTGAAGC
64 GATTGAAGC
10067556 TATACACCAC
Statistics
Matches: 508, Mismatches: 53, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
98 6 0.01
99 221 0.44
100 277 0.55
101 4 0.01
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (100 bp):
ATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGA
TTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCG
Found at i:10067229 original size:199 final size:199
Alignment explanation
Indices: 10066887--10067555 Score: 927
Period size: 199 Copynumber: 3.4 Consensus size: 199
10066877 TTCCCTAACA
*
10066887 ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGTTCCCTGACATTGCAATTTAAGAA-A
1 ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTTAA-AAGA
* * * * *
10066951 TTGAAGCCACAACGGCGAATCTCATTTCCCTGGC-AGTACAGTGGAGCAGATTAAAGCTACGACG
65 TTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGA-TGCAGTGGAGCAGATTAAAGCTACAACG
* * * *
10067015 GCAAATCTTGCTTCCCTGATATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCC
129 GCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCC
10067080 CAGGTG
194 CAGGTG
* * *
10067086 ATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTATTCCCCGACATTACAATTTAAAAGAT
1 ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTTAAAAGAT
** *
10067151 TGAAGCCGCAACGGCGAATCTTACTTCTATGGCGATGCAGTGGAGCATATTAAAGCTACAACGGC
66 TGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGC
*
10067216 GAATCTAGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTT-CCA
131 GAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCCA
*
10067280 TGGCG
196 -GGTG
* * * *
10067285 ATGCAGTGGAGCAGATTAAAGCTAAAATGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGA
1 ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTG-TTCCCCGACATTGCAATTTAAAAGA
* * * * *
10067350 TTAAAGCCGCAACGACAAATCTTACTTCCCTGGCGATGCAGTGGATCAGATTGAAA-CTAAAACG
65 TTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGATGCAGTGGAGCAGATT-AAAGCTACAACG
* * *
10067414 GTGAATCTTG-TTCCCCGACATTGCAATTAAAAAGATTGAAGCTGCAACGGCGAATCTTACTTCC
129 GCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCC
*
10067478 CTGGT-
194 CAGGTG
* * *
10067483 AGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTGGTTCCCCGACATTGCAGTTTAAAAAG
1 A-TGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTT-AAAAG
10067548 ATTGAAGC
64 ATTGAAGC
10067556 TATACACCAC
Statistics
Matches: 415, Mismatches: 47, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
198 23 0.06
199 303 0.73
200 86 0.21
201 3 0.01
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (199 bp):
ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTTAAAAGAT
TGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGC
GAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCCA
GGTG
Found at i:10067470 original size:299 final size:296
Alignment explanation
Indices: 10066887--10067555 Score: 946
Period size: 299 Copynumber: 2.2 Consensus size: 296
10066877 TTCCCTAACA
*
10066887 ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGTTCCCTGACATTGCAATTTAAGAA-A
1 ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATC-TGTTCCCCGACATTGCAATTTAA-AAGA
* * **
10066951 TTGAAGCCACAACGGCGAATCTCATTTCCCTGGCAGTACAGTGGAGCAGATTAAAGCTACGACGG
64 TTGAAGCCACAACGGCGAATCTCACTTCCATGGCAGTACAGTGGAGCAGATTAAAGCTAAAACGG
* * * * * *
10067016 CAAATCTTGCTTCCCTGATATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCC
129 CAAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTAAAGCCACAACGACAAATCTTACTTCCC
* * * *
10067081 AGGTGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTATTCCCCGACATTACAATTTAA
194 AGGCGATGCAGTGGATCAGATTGAAACTAAAACGGCGAATCTTATTCCCCGACATTACAATTAAA
*
10067146 AAGATTGAAGCCGCAACGGCGAATCTTACTTCTATGGCG
259 AAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGG-G
* *
10067185 ATGCAGTGGAGCATATTAAAGCTACAACGGCGAATCTAGCTTCCCCGACATTGCAATTTAAAAGA
1 ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCT-G-TTCCCCGACATTGCAATTTAAAAGA
* * * *
10067250 TTGAAGCCGCAACGGCGAATCTTACTTCCATGGC-GATGCAGTGGAGCAGATTAAAGCTAAAATG
64 TTGAAGCCACAACGGCGAATCTCACTTCCATGGCAG-TACAGTGGAGCAGATTAAAGCTAAAACG
* *
10067314 GCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTAAAGCCGCAACGACAAATCTTACTTCC
128 GCAAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTAAAGCCACAACGACAAATCTTACTTCC
* * * *
10067379 CTGGCGATGCAGTGGATCAGATTGAAACTAAAACGGTGAATCTTGTTCCCCGACATTGCAATTAA
193 CAGGCGATGCAGTGGATCAGATTGAAACTAAAACGGCGAATCTTATTCCCCGACATTACAATTAA
* * *
10067444 AAAGATTGAAGCTGCAACGGCGAATCTTACTTCCCTGGT
258 AAAGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGG
* *
10067483 AGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTGGTTCCCCGACATTGCAGTTTAAAAAG
1 A-TGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCT-GTTCCCCGACATTGCAATTT-AAAAG
10067548 ATTGAAGC
63 ATTGAAGC
10067556 TATACACCAC
Statistics
Matches: 329, Mismatches: 36, Indels: 11
0.88 0.10 0.03
Matches are distributed among these distances:
297 1 0.00
298 57 0.17
299 271 0.82
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (296 bp):
ATGCAGTGGAGCAGATTGAAGCTACAACGGCGAATCTGTTCCCCGACATTGCAATTTAAAAGATT
GAAGCCACAACGGCGAATCTCACTTCCATGGCAGTACAGTGGAGCAGATTAAAGCTAAAACGGCA
AATCTTGCTTCCCCGACATTGCAATTAAAAAGATTAAAGCCACAACGACAAATCTTACTTCCCAG
GCGATGCAGTGGATCAGATTGAAACTAAAACGGCGAATCTTATTCCCCGACATTACAATTAAAAA
GATTGAAGCCGCAACGGCGAATCTTACTTCCATGGG
Found at i:10067624 original size:40 final size:40
Alignment explanation
Indices: 10067569--10068052 Score: 551
Period size: 40 Copynumber: 11.8 Consensus size: 40
10067559 ACACCACAGA
*
10067569 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
*
10067609 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
* * * *
10067649 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATAGAACCACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCA-AG
* *
10067690 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCTCCTCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
* *
10067731 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAACCACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GCATCA-AG
*
10067772 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
* * *
10067813 TCTTATATCCCTAAGCAGTAGTGGAGCAGA-CAGAACCACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GCATCA-AG
10067854 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
* *
10067895 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAAAAAATCAA-
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-----CATCAAG
* ** * ** *** *
10067939 TCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACAG
1 TCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-TCGCATCA-AG
10067982 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
*
10068023 TCTTATCTCCCTAAGTAGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
10068053 CAGAAAAAAA
Statistics
Matches: 380, Mismatches: 44, Indels: 40
0.82 0.09 0.09
Matches are distributed among these distances:
39 2 0.01
40 200 0.53
41 18 0.05
42 103 0.27
43 15 0.04
44 22 0.06
45 18 0.05
46 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
Found at i:10067722 original size:82 final size:82
Alignment explanation
Indices: 10067569--10068183 Score: 629
Period size: 82 Copynumber: 7.4 Consensus size: 82
10067559 ACACCACAGA
* * * * *
10067569 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCA-AG-TCTTATCTCCCTAAGTAGTAGTG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
10067632 GAGCAGATCGCATCAAG
66 GAGCAGATCGCATCAAG
*
10067649 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
* *
10067714 GAGCAGATCTCCTCAAG
66 GAGCAGATCGCATCAAG
*
10067731 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
*
10067796 GAGCAGATCACATCAAG
66 GAGCAGATCGCATCAAG
* *
10067813 TCTTATATCCCTAAGCAGTAGTGGAGCAGACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
10067878 GAGCAGATCGCATCAAG
66 GAGCAGATCGCATCAAG
** * ** *
10067895 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAAAAAATCA-ATCCTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAG--AACCA-CAGATCTTATCTCCCT-AAGCAGT
** *** *
10067959 AGTGGAGTGGATTAAAACCACAG
62 AGTGGAGCAGA-TCGCATCA-AG
* * * *
10067982 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCA-AG-TCTTATCTCCCTAAGTAGTAGT
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAACCACAGATCTTATCTCCCTAAGCAGTAGT
* *
10068045 GGAGCAGA-CAGAAAAAAAAACCAA-
65 GGAGCAGATC-G-------CATCAAG
* * * * *
10068069 TCCTATCTCCCTGAAGTTA-TAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCT--GCAGTT
1 TCTTATCTCCCT-AAG-CAGTAGTGGAGCAGA-TAGAACCACAGATCTTATCTCCCTAAGCAG-T
*
10068131 GCAGTAGAGCAGATCGCATCAAG
62 --AGTGGAGCAGATCGCATCAAG
* *
10068154 TCTTATCTCCGTAAGCAGTAATGGAGCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
10068184 CAAAAGAAAT
Statistics
Matches: 452, Mismatches: 54, Indels: 54
0.81 0.10 0.10
Matches are distributed among these distances:
80 35 0.08
81 2 0.00
82 226 0.50
83 15 0.03
84 44 0.10
85 25 0.06
86 17 0.04
87 16 0.04
88 41 0.09
89 8 0.02
90 11 0.02
91 11 0.02
92 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (82 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAACCACAGATCTTATCTCCCTAAGCAGTAGTG
GAGCAGATCGCATCAAG
Found at i:10068510 original size:17 final size:18
Alignment explanation
Indices: 10068480--10068513 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
10068470 GGACTAGAAT
*
10068480 GAAGCTACTTGAAGAAGA
1 GAAGCTACTAGAAGAAGA
10068498 GAAGC-ACTAGAAGAAG
1 GAAGCTACTAGAAGAAG
10068514 TCAAGACTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.47, C:0.12, G:0.29, T:0.12
Consensus pattern (18 bp):
GAAGCTACTAGAAGAAGA
Found at i:10070870 original size:106 final size:105
Alignment explanation
Indices: 10070601--10070916 Score: 398
Period size: 106 Copynumber: 3.0 Consensus size: 105
10070591 TTTTCTAAAT
* *
10070601 AAGGCAATGTTTTGCGTTTGAAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
10070666 GTTTGACCAAAATAGCCAAATACCCTTTTTAAACTTTCAAAAT
66 GTTTGA-CAAAATAGCCAAATATCC-TTTTAAA-TTTTAAAAC
* * * * * * *
10070709 AAGACCATATTTCGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGAGTACTC
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
10070774 GTTTGGCAAAATAGTCGAATATCCTTTTGAAATTTTAAAAC
66 GTTTGACAAAATAGCCAAATATCCTTTT-AAATTTTAAAAC
* * * *
10070815 GAGGCAATGTTTTGCGTTTGGAAATTCGAGAGAATGTGCCCTAACGTGCTAGGTTTCGATTTCTC
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
* * *
10070880 GTTCGACTAAATAGCCAAATATCCTCTTAAATTTTAA
66 GTTTGACAAAATAGCCAAATATCCTTTTAAATTTTAA
10070917 TCCATGTCGT
Statistics
Matches: 175, Mismatches: 32, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
105 9 0.05
106 87 0.50
107 18 0.10
108 61 0.35
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (105 bp):
AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTC
GTTTGACAAAATAGCCAAATATCCTTTTAAATTTTAAAAC
Found at i:10072498 original size:19 final size:19
Alignment explanation
Indices: 10072474--10072510 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
10072464 AGTCAGCAAA
10072474 TCAGACAACTTCTTAATTT
1 TCAGACAACTTCTTAATTT
10072493 TCAGACAACTTCTTAATT
1 TCAGACAACTTCTTAATT
10072511 GTGAACTCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (19 bp):
TCAGACAACTTCTTAATTT
Found at i:10085289 original size:21 final size:21
Alignment explanation
Indices: 10085263--10085406 Score: 65
Period size: 21 Copynumber: 6.9 Consensus size: 21
10085253 CACAAAAGCA
*
10085263 CATAAGTGCTAAACAGAAACC
1 CATAAGGGCTAAACAGAAACC
* * ** * *
10085284 CATAAGGGTTGAATGGAAGCT
1 CATAAGGGCTAAACAGAAACC
* * *
10085305 CATAAGAGCTGAACGGAAACC
1 CATAAGGGCTAAACAGAAACC
* * *
10085326 CATAAGGGTTAAACAGAAGCT
1 CATAAGGGCTAAACAGAAACC
* * *
10085347 CA-ATAGAGCTGAACGGAAACC
1 CATA-AGGGCTAAACAGAAACC
* * * *
10085368 CATTAGGGTTAAACGGAAACT
1 CATAAGGGCTAAACAGAAACC
* * *
10085389 CATATGAGTTAAACAGAA
1 CATAAGGGCTAAACAGAA
10085407 GTTTGTGAGA
Statistics
Matches: 88, Mismatches: 33, Indels: 4
0.70 0.26 0.03
Matches are distributed among these distances:
20 1 0.01
21 87 0.99
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.17
Consensus pattern (21 bp):
CATAAGGGCTAAACAGAAACC
Found at i:10085310 original size:42 final size:42
Alignment explanation
Indices: 10085258--10085406 Score: 165
Period size: 42 Copynumber: 3.5 Consensus size: 42
10085248 GGCTGCACAA
* * * *
10085258 AAGCACATAAGTGCTAAACAGAAACCCATAAGGGTTGAATGG
1 AAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAAACGG
* * *
10085300 AAGCTCATAAGAGCTGAACGGAAACCCATAAGGGTTAAACAG
1 AAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAAACGG
* * *
10085342 AAGCTCA-ATAGAGCTGAACGGAAACCCATTAGGGTTAAACGG
1 AAGCTCATA-AGAGCTAAACAGAAACCCATAAGGGTTAAACGG
* * *
10085384 AAACTCATATGAGTTAAACAGAA
1 AAGCTCATAAGAGCTAAACAGAA
10085407 GTTTGTGAGA
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
41 1 0.01
42 89 0.98
43 1 0.01
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.17
Consensus pattern (42 bp):
AAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAAACGG
Found at i:10091766 original size:26 final size:26
Alignment explanation
Indices: 10091736--10091785 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
10091726 AACATAGAAG
*
10091736 TAAATACCGAAATGGGTTTACAAAAA
1 TAAATACCGAAATGAGTTTACAAAAA
10091762 TAAATACCGAAATGAGTTTACAAA
1 TAAATACCGAAATGAGTTTACAAA
10091786 TGTGTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.50, C:0.12, G:0.14, T:0.24
Consensus pattern (26 bp):
TAAATACCGAAATGAGTTTACAAAAA
Found at i:10108687 original size:19 final size:19
Alignment explanation
Indices: 10108665--10108712 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
10108655 TAATTCCCAT
10108665 AAAATAAATTTATTCTTAG
1 AAAATAAATTTATTCTTAG
10108684 AAAATAAATTTATTCTTAG
1 AAAATAAATTTATTCTTAG
*
10108703 GAAATAAATT
1 AAAATAAATT
10108713 ATCACTACTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (19 bp):
AAAATAAATTTATTCTTAG
Found at i:10109073 original size:4 final size:4
Alignment explanation
Indices: 10109059--10109111 Score: 51
Period size: 4 Copynumber: 14.2 Consensus size: 4
10109049 TTATAAAAAA
* *
10109059 TAAT T-AT TAAT TAAT TAAT TAAT TAA- -AAT AAAT TAAT T-TT TAAT
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT
*
10109103 TAAA TAAT T
1 TAAT TAAT T
10109112 TCTCAACTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
2 2 0.05
3 5 0.12
4 33 0.82
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (4 bp):
TAAT
Found at i:10112072 original size:31 final size:31
Alignment explanation
Indices: 10111994--10112077 Score: 75
Period size: 31 Copynumber: 2.8 Consensus size: 31
10111984 AAGTTATGGA
* *
10111994 TTTAGTCCCTATAATTTT---ATTTGATCAAT
1 TTTAGTCCCTGTAATTTTCAAATTAG-TCAAT
* * *
10112023 TTTAGTTCTTTTAATTTTCAAATTAGTCAAT
1 TTTAGTCCCTGTAATTTTCAAATTAGTCAAT
* *
10112054 TTTAGTCCCTGTACTTTTCGAATT
1 TTTAGTCCCTGTAATTTTCAAATT
10112078 TTGAAAATTT
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
29 15 0.35
31 24 0.56
32 4 0.09
ACGTcount: A:0.25, C:0.14, G:0.08, T:0.52
Consensus pattern (31 bp):
TTTAGTCCCTGTAATTTTCAAATTAGTCAAT
Found at i:10112927 original size:63 final size:63
Alignment explanation
Indices: 10112854--10113016 Score: 281
Period size: 63 Copynumber: 2.6 Consensus size: 63
10112844 TCATCTAAAA
* *
10112854 GGATTAGGATTAATTTCCTACTAATATATATGCAACATGCTTGCAGGGAATAGACCTCTAACG
1 GGATTAGGATTAATTTCCTACTAATATAAATACAACATGCTTGCAGGGAATAGACCTCTAACG
10112917 GGATTAGGATTAATTTCCTACTAATATAAATACAACATGCTTGCAGGGAATAGACCTCTAACG
1 GGATTAGGATTAATTTCCTACTAATATAAATACAACATGCTTGCAGGGAATAGACCTCTAACG
* * *
10112980 GGATTAGGATTAATTTCCAATTCATATAAATACAACA
1 GGATTAGGATTAATTTCCTACTAATATAAATACAACA
10113017 CCTTAAATTA
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 95 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (63 bp):
GGATTAGGATTAATTTCCTACTAATATAAATACAACATGCTTGCAGGGAATAGACCTCTAACG
Found at i:10114375 original size:42 final size:42
Alignment explanation
Indices: 10114316--10114396 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
10114306 CTTCACAGAT
*
10114316 TAGATAATGACCTAACCCCCACCATCAGTGGTTGGGTTACAG
1 TAGATAATGACCCAACCCCCACCATCAGTGGTTGGGTTACAG
10114358 TAGATAATGACCCAACCCCCACCATCAGTGGTTGGGTTA
1 TAGATAATGACCCAACCCCCACCATCAGTGGTTGGGTTA
10114397 AAGTGGTCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (42 bp):
TAGATAATGACCCAACCCCCACCATCAGTGGTTGGGTTACAG
Found at i:10117694 original size:25 final size:27
Alignment explanation
Indices: 10117635--10117695 Score: 65
Period size: 29 Copynumber: 2.3 Consensus size: 27
10117625 TTAAACTATA
*
10117635 CCCTCTTTTATTTTATTTATATTATTT
1 CCCTTTTTTATTTTATTTATATTATTT
10117662 CTCTCTTTTTGTATTTT-TTTAT-TT-TTT
1 C-C-CTTTTT-TATTTTATTTATATTATTT
10117689 CCCTTTT
1 CCCTTTT
10117696 ATGATGTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
25 5 0.17
26 1 0.03
27 5 0.17
28 3 0.10
29 10 0.33
30 6 0.20
ACGTcount: A:0.11, C:0.16, G:0.02, T:0.70
Consensus pattern (27 bp):
CCCTTTTTTATTTTATTTATATTATTT
Found at i:10117998 original size:16 final size:16
Alignment explanation
Indices: 10117977--10118010 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
10117967 CGATTTTCTC
10117977 TATTTTT-TAATATTTT
1 TATTTTTATAA-ATTTT
10117993 TATTTTTATAAATTTT
1 TATTTTTATAAATTTT
10118009 TA
1 TA
10118011 ATAATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.82
17 3 0.18
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TATTTTTATAAATTTT
Found at i:10120466 original size:21 final size:21
Alignment explanation
Indices: 10120440--10120545 Score: 106
Period size: 21 Copynumber: 5.0 Consensus size: 21
10120430 TTTGGGTGGA
*
10120440 TCAGCTCTTACGAGCTTTTGT
1 TCAGCTCTTACGAGCTTCTGT
* *
10120461 TCAGCTCTCACGAGCTTCTAT
1 TCAGCTCTTACGAGCTTCTGT
* * * *
10120482 TAAGCTGTTACAAGCTTCTATT
1 TCAGCTCTTACGAGCTTCT-GT
10120504 TCA-CTCTTACGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
* * *
10120524 TTAGCTCTTATGAGTTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
10120545 T
1 T
10120546 GGCATGTTCG
Statistics
Matches: 68, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
20 3 0.04
21 62 0.91
22 3 0.04
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.42
Consensus pattern (21 bp):
TCAGCTCTTACGAGCTTCTGT
Found at i:10131220 original size:12 final size:12
Alignment explanation
Indices: 10131203--10131227 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10131193 AAAATGAAAC
10131203 TTTTAAAATATA
1 TTTTAAAATATA
10131215 TTTTAAAATATA
1 TTTTAAAATATA
10131227 T
1 T
10131228 ATTTTTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTTAAAATATA
Found at i:10131315 original size:12 final size:13
Alignment explanation
Indices: 10131288--10131312 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10131278 TATTTGTACC
10131288 AAAAAATATTTTT
1 AAAAAATATTTTT
10131301 AAAAAATATTTT
1 AAAAAATATTTT
10131313 AAATTTGTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AAAAAATATTTTT
Found at i:10133475 original size:21 final size:23
Alignment explanation
Indices: 10133443--10133484 Score: 54
Period size: 21 Copynumber: 1.9 Consensus size: 23
10133433 ATTTTACTAA
10133443 AATTTCATTCAA-AAA-TTGATC
1 AATTTCATTCAATAAAGTTGATC
10133464 AATTTACA-TCAATAAAGTTGA
1 AATTT-CATTCAATAAAGTTGA
10133485 AAACAGGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.36
Consensus pattern (23 bp):
AATTTCATTCAATAAAGTTGATC
Found at i:10134667 original size:16 final size:18
Alignment explanation
Indices: 10134635--10134667 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10134625 GTTAATAGAT
10134635 TAAATTTAGTGTTAATTG
1 TAAATTTAGTGTTAATTG
10134653 TAAATTT-GT-TTAATT
1 TAAATTTAGTGTTAATT
10134668 TATCAAATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (18 bp):
TAAATTTAGTGTTAATTG
Found at i:10135852 original size:19 final size:19
Alignment explanation
Indices: 10135797--10135833 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
10135787 TAATAAACAC
*
10135797 TAAAAAATTATTTTAAAAA
1 TAAAAAAGTATTTTAAAAA
10135816 TAAAAAAGTATTTTAAAA
1 TAAAAAAGTATTTTAAAA
10135834 TTATTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (19 bp):
TAAAAAAGTATTTTAAAAA
Found at i:10137446 original size:16 final size:16
Alignment explanation
Indices: 10137422--10137459 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
10137412 TTTGGTTCGC
* *
10137422 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
10137438 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
10137454 TGTAAT
1 TGTAAT
10137460 AGCAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:10137709 original size:16 final size:16
Alignment explanation
Indices: 10137672--10137713 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
10137662 TTAATCATAT
*
10137672 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
10137688 TT-AAATATATTATAA
1 TTAAAATATATTATAA
10137703 TTAAAATATAT
1 TTAAAATATAT
10137714 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:10137720 original size:14 final size:15
Alignment explanation
Indices: 10137681--10137722 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
10137671 TTTAAACATA
*
10137681 ATTATTATTAAATAT
1 ATTATAATTAAATAT
10137696 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
10137710 A-TATAATTTAATA
1 ATTATAATTAAATA
10137723 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:10138129 original size:92 final size:92
Alignment explanation
Indices: 10138014--10138191 Score: 272
Period size: 92 Copynumber: 1.9 Consensus size: 92
10138004 AAATTTTAAA
* *
10138014 TTAAAATAATAATTATTACATATAATTTAATAATTAATAT-TAAATTTCATAAAATTCTTGATAA
1 TTAAAATAATAATTATTAAATATAATTTAATAA-TAATATAT-AATTTCATAAAATTCTTAATAA
*
10138078 T-AAATTTTCTTATATGAATTTATACAAT
64 TAAAATGTTCTTATATGAATTTATACAAT
*
10138106 TTAAAATAATTAA-TATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAAT
1 TTAAAATAA-TAATTATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAATAAT
10138170 AAAATGTTCTTATATGAATTTA
65 AAAATGTTCTTATATGAATTTA
10138192 CTAAAATCAA
Statistics
Matches: 79, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
91 27 0.34
92 49 0.62
93 3 0.04
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (92 bp):
TTAAAATAATAATTATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAATAATA
AAATGTTCTTATATGAATTTATACAAT
Found at i:10144485 original size:17 final size:17
Alignment explanation
Indices: 10144457--10144504 Score: 71
Period size: 17 Copynumber: 2.8 Consensus size: 17
10144447 CTGATTACAA
10144457 AATTTGAATTTAATTTCC
1 AATTT-AATTTAATTTCC
*
10144475 AATTTAATTTAATTTTC
1 AATTTAATTTAATTTCC
10144492 AATTT-ATTTAATT
1 AATTTAATTTAATT
10144505 AATTATTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 8 0.28
17 16 0.55
18 5 0.17
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.56
Consensus pattern (17 bp):
AATTTAATTTAATTTCC
Found at i:10144827 original size:21 final size:21
Alignment explanation
Indices: 10144801--10144841 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
10144791 CAATGTGGCA
10144801 AGTTAACTAACCACATCAGCT
1 AGTTAACTAACCACATCAGCT
* *
10144822 AGTTAACTTATCACATCAGC
1 AGTTAACTAACCACATCAGC
10144842 GATTTCGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.27
Consensus pattern (21 bp):
AGTTAACTAACCACATCAGCT
Found at i:10154039 original size:43 final size:43
Alignment explanation
Indices: 10153990--10154075 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
10153980 TCATATTACA
10153990 TTTCTCATCTCATATTCACTTCTCATCTTTTCCATTTCAATAT
1 TTTCTCATCTCATATTCACTTCTCATCTTTTCCATTTCAATAT
*
10154033 TTTCTCATCTCATATTCATTTCTCATCTTTTCCATTTCAATAT
1 TTTCTCATCTCATATTCACTTCTCATCTTTTCCATTTCAATAT
10154076 CAATCATAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.21, C:0.27, G:0.00, T:0.52
Consensus pattern (43 bp):
TTTCTCATCTCATATTCACTTCTCATCTTTTCCATTTCAATAT
Found at i:10154047 original size:15 final size:15
Alignment explanation
Indices: 10153990--10154048 Score: 52
Period size: 15 Copynumber: 4.1 Consensus size: 15
10153980 TCATATTACA
10153990 TTTCTCATCTCATA-
1 TTTCTCATCTCATAT
* * *
10154004 -TTCACTTCTCATCT
1 TTTCTCATCTCATAT
*
10154018 TTTC-CATTTCAATAT
1 TTTCTCATCTC-ATAT
10154033 TTTCTCATCTCATAT
1 TTTCTCATCTCATAT
10154048 T
1 T
10154049 CATTTCTCAT
Statistics
Matches: 34, Mismatches: 7, Indels: 7
0.71 0.15 0.15
Matches are distributed among these distances:
13 10 0.29
14 4 0.12
15 15 0.44
16 5 0.15
ACGTcount: A:0.20, C:0.27, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTCTCATCTCATAT
Found at i:10154056 original size:18 final size:18
Alignment explanation
Indices: 10153980--10154060 Score: 65
Period size: 18 Copynumber: 4.1 Consensus size: 18
10153970 GTATCACATT
10153980 TCATATTACATTTCTCATC
1 TCATATT-CATTTCTCATC
*
10153999 TCATATTCACTTCTCATC
1 TCATATTCATTTCTCATC
10154017 TTTTCCAT-TTCAATATTTTCTCATC
1 ---T-CATATTC---A-TTTCTCATC
10154042 TCATATTCATTTCTCATC
1 TCATATTCATTTCTCATC
10154060 T
1 T
10154061 TTTCCATTTC
Statistics
Matches: 51, Mismatches: 2, Indels: 19
0.71 0.03 0.26
Matches are distributed among these distances:
18 20 0.39
19 8 0.16
21 7 0.14
22 7 0.14
24 1 0.02
25 8 0.16
ACGTcount: A:0.22, C:0.27, G:0.00, T:0.51
Consensus pattern (18 bp):
TCATATTCATTTCTCATC
Found at i:10154766 original size:19 final size:18
Alignment explanation
Indices: 10154728--10154766 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
10154718 TATTACACAA
*
10154728 TTCAATTTCACATTAAAT
1 TTCAATTTCACACTAAAT
*
10154746 TTCAATTTTCACACTATAT
1 TTCAA-TTTCACACTAAAT
10154765 TT
1 TT
10154767 TGCTTATTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.49
Consensus pattern (18 bp):
TTCAATTTCACACTAAAT
Found at i:10155703 original size:3 final size:3
Alignment explanation
Indices: 10155697--10155744 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
10155687 CTTCTTTTGG
10155697 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
10155745 CTGCTATTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:10158874 original size:18 final size:18
Alignment explanation
Indices: 10158853--10158900 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
10158843 AAGATATGAG
*
10158853 AAATGATGTTCACATTTT
1 AAATGATGTTCACATTTC
10158871 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
10158889 AAATGATGTTCA
1 AAATGATGTTCA
10158901 GATTGATGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:10159390 original size:72 final size:72
Alignment explanation
Indices: 10159309--10159547 Score: 392
Period size: 72 Copynumber: 3.3 Consensus size: 72
10159299 CAATGCTAAA
* *
10159309 CTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTTTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
10159374 GTGTAAT
66 GTGTAAT
*
10159381 CTAGTTTTATCAATGGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
10159446 GTGTAAT
66 GTGTAAT
* *
10159453 CTAGTTTTATTAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
* *
10159518 ACT-AAAT
66 -GTGTAAT
10159525 -TAGTTTTATCAATAGTTGTTTAT
1 CTAGTTTTATCAATAGTTGTTTAT
10159548 ATATGATTTT
Statistics
Matches: 157, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
71 22 0.14
72 134 0.85
73 1 0.01
ACGTcount: A:0.23, C:0.05, G:0.15, T:0.56
Consensus pattern (72 bp):
CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
GTGTAAT
Found at i:10162196 original size:13 final size:13
Alignment explanation
Indices: 10162178--10162205 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
10162168 TGTAAACATC
10162178 TAATAAAAATATT
1 TAATAAAAATATT
10162191 TAATAAAAATATT
1 TAATAAAAATATT
10162204 TA
1 TA
10162206 TGAGTTCGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TAATAAAAATATT
Found at i:10163046 original size:30 final size:30
Alignment explanation
Indices: 10163012--10163080 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
10163002 TAGGGGGATA
*
10163012 GAAAATGGTAGCT-TCGTTAAGTTTGTAACG
1 GAAAATGGTAGCTGT-GTTAAGTCTGTAACG
*
10163042 GAAAATGGTAGCTGTGTTACGTCTGTAACG
1 GAAAATGGTAGCTGTGTTAAGTCTGTAACG
*
10163072 AAAAATGGT
1 GAAAATGGT
10163081 TAGTGGTGAC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
30 34 0.97
31 1 0.03
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.30
Consensus pattern (30 bp):
GAAAATGGTAGCTGTGTTAAGTCTGTAACG
Found at i:10171621 original size:133 final size:130
Alignment explanation
Indices: 10171242--10171614 Score: 511
Period size: 132 Copynumber: 2.8 Consensus size: 130
10171232 GTGGAGCAGG
** *
10171242 TTGAAGATAGCAGATCTTGCCTTCCTGCATAGACAGCGGAGCAGATCAAAGATGGCGAATTTTAC
1 TTGAAGATTTCAGATCTTGCC-TCCTGCATAGACAGC-GAGCAGGTCAAAGATGGCG-ATTTTAC
* **
10171307 CTCCCTGTGGTTACAGTGGAGTACATTGAAGCCATTAATTCTACTTCCCTGGGCTGCAGTGGAAT
63 CTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTAAGCTGCAGTGGAAT
10171372 AGA
128 AGA
*
10171375 TTGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAG--TG-GAGCAGGTCAAAGATGGCGGATTTT
1 TTGAAGATTTCAGATCTTGCCT-CCT--GCA-TAGACAGCGAGCAGGTCAAAGATGGC-GATTTT
*
10171437 ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTAAG-TAGTAGTGG
61 ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTAAGCT-GCAGTGG
10171501 AATAGA
125 AATAGA
* * *
10171507 TTGAAGATTTTAGATCTTGCCGTCCTGCATAGACAGCGAAGCAGGTCGAAGACGGCAGATTTTAC
1 TTGAAGATTTCAGATCTTGCC-TCCTGCATAGACAGCG-AGCAGGTCAAAGATGGC-GATTTTAC
10171572 CTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTA
63 CTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTA
10171615 TCTCCCTTTA
Statistics
Matches: 216, Mismatches: 13, Indels: 22
0.86 0.05 0.09
Matches are distributed among these distances:
129 3 0.01
130 3 0.01
131 2 0.01
132 111 0.51
133 90 0.42
134 1 0.00
135 3 0.01
136 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (130 bp):
TTGAAGATTTCAGATCTTGCCTCCTGCATAGACAGCGAGCAGGTCAAAGATGGCGATTTTACCTC
CCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTAAGCTGCAGTGGAATAGA
Found at i:10171700 original size:106 final size:106
Alignment explanation
Indices: 10171515--10171727 Score: 381
Period size: 106 Copynumber: 2.0 Consensus size: 106
10171505 GATTGAAGAT
* * *
10171515 TTTAGATCTTGCCGTCCTGCATAGACAGCGAAGCAGGTCGAAGACGGCAGATTTTACCTCCCTGT
1 TTTAGATCTTGCCGTCCTGCATAGACAGCGAAGAAGATCAAAGACGGCAGATTTTACCTCCCTGT
10171580 GGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCC
66 GGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCC
*
10171621 TTTAGATCTTGCCTTCCTGCATAGACAGCGAAGAAGATCAAAGACGGCAGATTTTACCTCCCTGT
1 TTTAGATCTTGCCGTCCTGCATAGACAGCGAAGAAGATCAAAGACGGCAGATTTTACCTCCCTGT
*
10171686 GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCC
66 GGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCC
10171727 T
1 T
10171728 GAGCAGCAGT
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
106 102 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (106 bp):
TTTAGATCTTGCCGTCCTGCATAGACAGCGAAGAAGATCAAAGACGGCAGATTTTACCTCCCTGT
GGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCC
Found at i:10171838 original size:239 final size:239
Alignment explanation
Indices: 10171419--10171860 Score: 742
Period size: 239 Copynumber: 1.8 Consensus size: 239
10171409 GTGGAGCAGG
* *
10171419 TCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACT
1 TCAAAGACGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACT
* * * * * * *
10171484 TCCCTAAGTAGTAGTGGAATAGATTGAAGATTTTAGATCTTGCCGTCCTGCATAGACAGCGAAGC
66 TCCCTAAGCAGCAGTGGAATAGACTAAAGATTTTAGATCTTGCCGTCCTACATAGACAACAAAGC
*
10171549 AGGTCGAAGACGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCT
131 AGGTCGAAGACGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAACCAATAATTCT
10171614 ATCTCCCTTTAGATCTTGCCTTCCTGCATAGACAGCGAAGAAGA
196 ATCTCCCTTTAGATCTTGCCTTCCTGCATAGACAGCGAAGAAGA
*
10171658 TCAAAGACGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA-T
1 TCAAAGACGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACT
* *
10171722 CTCCCTGAGCAGCAGTGGAATAGACTAAAGATTTTAGATCTTGCCTTCCTACATAGACAACAAAG
66 -TCCCTAAGCAGCAGTGGAATAGACTAAAGATTTTAGATCTTGCCGTCCTACATAGACAACAAAG
*
10171787 CAGGTCGAAGACGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAACCAGTAATTC
130 CAGGTCGAAGACGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAACCAATAATTC
10171852 TATCTCCCT
195 TATCTCCCT
10171861 GGGCAGCAGT
Statistics
Matches: 188, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
238 1 0.01
239 187 0.99
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (239 bp):
TCAAAGACGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACT
TCCCTAAGCAGCAGTGGAATAGACTAAAGATTTTAGATCTTGCCGTCCTACATAGACAACAAAGC
AGGTCGAAGACGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAACCAATAATTCT
ATCTCCCTTTAGATCTTGCCTTCCTGCATAGACAGCGAAGAAGA
Found at i:10171859 original size:133 final size:131
Alignment explanation
Indices: 10171621--10172547 Score: 1022
Period size: 133 Copynumber: 7.0 Consensus size: 131
10171611 TCTATCTCCC
* *
10171621 TTTAGATCTTGCCTTCCTGCATAGACAGCGAAGAAGATCAAAGACGGCAGATTTTACCTCCCTGT
1 TTTAGATCTTGCCTTCCT-CATAG-CAACGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTGT
* *
10171686 GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGAGCAGCAGTGGAATAGACTAAA
64 GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGACTGAA
10171751 GAT
129 GAT
* * *
10171754 TTTAGATCTTGCCTTCCTACATAGACAACAAAGCAGGTCGAAGACGGCAGATTTTACCTCCCTGT
1 TTTAGATCTTGCCTTCCT-CATAG-CAACGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTGT
* *
10171819 GGTTACAGTGGAGTACATTGAAACCAGTAATTCTATCTCCCTGGGCAGCAGTGAAATAGACTGAA
64 GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGACTGAA
10171884 GAT
129 GAT
* * *
10171887 TTTAGATCTTGCCTTCCTGCATAGGCAACGAAGAAGATCGAAGACGACAGATTTTACCTCCCTGT
1 TTTAGATCTTGCCTTCCT-CATA-GCAACGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTGT
*
10171952 GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGTAGCAGTGGAATAGACTGAA
64 GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGACTGAA
10172017 GAT
129 GAT
* * * * ** *
10172020 TTTATATCTTGCCTTCCTGCATAGACAGCGAAGTAGGTTGAAGACGGCAGATTTTACCTCTCTGT
1 TTTAGATCTTGCCTTCCT-CATAG-CAACGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTGT
* * * *
10172085 GGTTATAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGTAGTAGTGGAATAGATTGAA
64 GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGACTGAA
10172150 GAT
129 GAT
* * * * * * * * **
10172153 TTCATATATTGTCTTCCT-A-AGCATTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCATTG
1 TTTAGATCTTGCCTTCCTCATAGCA--A-CGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTG
* * * * *
10172216 AGGTTGCAGTGGAGTATATTGAAGCCAGTAATTCTATCTCCCTGGGTAGCAGTGGAATAGATTGA
63 TGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGACTGA
10172281 AGAT
128 AGAT
** * ** * * * * **
10172285 TACAGATATTATCTCCCT-A-AGCAATAGTGGAGCAGATCAAAGATGGTGGATTTTACCTCCCTG
1 TTTAGATCTTGCCTTCCTCATAGC-A-A-CGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTG
* * * * * *
10172348 AGGTTGCAGTAGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACAGTGGAATAGATTAA
63 TGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGACTGA
10172413 AGAT
128 AGAT
** * ** * * * * *
10172417 TACAGATCATATCTCCCT-A-AGCAATAGTGGAGCAGATCAAAGATGGTAGATTTTACCTCCCTG
1 TTTAGATCTTGCCTTCCTCATAGC-A-A-CGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTG
* * *
10172480 AGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCC-GGAGCAACAGTGGAATAGACAG
63 TGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGG-GCAGCAGTGGAATAGACTG
10172544 AAGA
127 AAGA
10172548 AATCAATCCT
Statistics
Matches: 718, Mismatches: 69, Indels: 15
0.90 0.09 0.02
Matches are distributed among these distances:
129 2 0.00
130 2 0.00
131 3 0.00
132 327 0.46
133 383 0.53
134 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (131 bp):
TTTAGATCTTGCCTTCCTCATAGCAACGAAGCAGATCAAAGACGGCAGATTTTACCTCCCTGTGG
TTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGACTGAAGA
T
Found at i:10172521 original size:44 final size:45
Alignment explanation
Indices: 10172354--10172535 Score: 108
Period size: 44 Copynumber: 4.2 Consensus size: 45
10172344 CCTGAGGTTG
* *
10172354 CAGTAGAGTACATTGAAGCCAGTA-ATTCTATCTCCCTG-GGCAA
1 CAGTGGAGTACATTAAAGCCAGTACATTCTATCTCCCTGAGGCAA
* * * * *
10172397 CAGTGGAATAGATTAAAG--ATTACAGATCATATCTCCCT-AAGCAA
1 CAGTGGAGTACATTAAAGCCAGTACA-TTC-TATCTCCCTGAGGCAA
* * * * *** * * * **
10172441 TAGTGGAGCAGATCAAAGATGGTAGATTTTACCTCCCTGAGGTTA
1 CAGTGGAGTACATTAAAGCCAGTACATTCTATCTCCCTGAGGCAA
* *
10172486 CAGTGGAGTACATTGAAGCCAGTA-ATTCTATCTCCCGGA-GCAA
1 CAGTGGAGTACATTAAAGCCAGTACATTCTATCTCCCTGAGGCAA
10172529 CAGTGGA
1 CAGTGGA
10172536 ATAGACAGAA
Statistics
Matches: 99, Mismatches: 33, Indels: 14
0.68 0.23 0.10
Matches are distributed among these distances:
41 3 0.03
42 1 0.01
43 25 0.25
44 47 0.47
45 20 0.20
46 3 0.03
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (45 bp):
CAGTGGAGTACATTAAAGCCAGTACATTCTATCTCCCTGAGGCAA
Found at i:10192321 original size:11 final size:11
Alignment explanation
Indices: 10192279--10192322 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
10192269 ATGAAAGAAT
*
10192279 AAGAAAAAAAA
1 AAGAAAAAATA
10192290 AAGAAAAAATA
1 AAGAAAAAATA
*
10192301 TAA-ATAAAATA
1 -AAGAAAAAATA
10192312 AAGAAAAAATA
1 AAGAAAAAATA
10192323 GTTTAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 2 0.07
11 24 0.86
12 2 0.07
ACGTcount: A:0.82, C:0.00, G:0.07, T:0.11
Consensus pattern (11 bp):
AAGAAAAAATA
Found at i:10196105 original size:379 final size:379
Alignment explanation
Indices: 10195406--10196161 Score: 1433
Period size: 379 Copynumber: 2.0 Consensus size: 379
10195396 TTTTGCTCAC
10195406 AATAATATCACCACAAGTAATAATATCACGAATAAAATGATACCGAATATCATTGTGCTTTGTTC
1 AATAATATCACCACAAGTAATAATATCACGAATAAAATGATACCGAATATCATTGTGCTTTGTTC
10195471 TCTCATGAAACATTGAATCTTTTGTAACGAAGATCACACTTTGACTGTCACAAAATACTGTATTG
66 TCTCATGAAACATTGAATCTTTTGTAACGAAGATCACACTTTGACTGTCACAAAATACTGTATTG
10195536 ATTTGAAGGTCTTTATTGAGTTCACTAAAGAGCCCCTTTAACCAGATAGGTTCTTTACAAGCGAT
131 ATTTGAAGGTCTTTATTGAGTTCACTAAAGAGCCCCTTTAACCAGATAGGTTCTTTACAAGCGAT
10195601 AGTAGTTTGCAAGATGGCTTTCCAACTAATTTCACAACCCCTAATTGTAAAGACATAACCCGTGA
196 AGTAGTTTGCAAGATGGCTTTCCAACTAATTTCACAACCCCTAATTGTAAAGACATAACCCGTGA
10195666 GAGATCTCCTTTTATCAAGGTCTCTGGAAAAATCAGTATCAACATGCCCAATGAATCTATCTCTA
261 GAGATCTCCTTTTATCAAGGTCTCTGGAAAAATCAGTATCAACATGCCCAATGAATCTATCTCTA
* *
10195731 TTTCTTCCAAACTATAAGCAAACATCAGTAGTGCCTCGTAAGTATCTTAAAAGT
326 TTTCTTCCAAACTATAACCAAACATCAGTAGTGCCTCGTAAGTATCTCAAAAGT
10195785 AATAATATCACCACAAGTAATAATATCACGAATAAAATGATACCGAATATCATTGTGCTTTGTTC
1 AATAATATCACCACAAGTAATAATATCACGAATAAAATGATACCGAATATCATTGTGCTTTGTTC
* *
10195850 TCTCATGAAACATTGAATCTTTTGTAAGGAAGATGACACTTTGACTGTCACAAAATACTGTATTG
66 TCTCATGAAACATTGAATCTTTTGTAACGAAGATCACACTTTGACTGTCACAAAATACTGTATTG
10195915 ATTTGAAGGTCTTTATTGAGTTCACTAAAGAGCCCAC-TTAACCAGATAGGTTCTTTACAAGCGA
131 ATTTGAAGGTCTTTATTGAGTTCACTAAAGAGCCC-CTTTAACCAGATAGGTTCTTTACAAGCGA
*
10195979 TAGTAGTTTGCAAGATGGCTTTCCAACTAATTTCACAACTCCTAATTGTAAAGACATAACCCGTG
195 TAGTAGTTTGCAAGATGGCTTTCCAACTAATTTCACAACCCCTAATTGTAAAGACATAACCCGTG
* *
10196044 AGAGATCTCCTTTTATCAAGGTCTTTGGAAAAATCAGTATCAACATGCCCAATGGATCTATCTCT
260 AGAGATCTCCTTTTATCAAGGTCTCTGGAAAAATCAGTATCAACATGCCCAATGAATCTATCTCT
10196109 ATTTCTTCCAAACTATAACCAAACATCAGTAGTGCCTCGTAAGTATCTCAAAA
325 ATTTCTTCCAAACTATAACCAAACATCAGTAGTGCCTCGTAAGTATCTCAAAA
10196162 TCCATTGAAC
Statistics
Matches: 369, Mismatches: 7, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
379 368 1.00
380 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (379 bp):
AATAATATCACCACAAGTAATAATATCACGAATAAAATGATACCGAATATCATTGTGCTTTGTTC
TCTCATGAAACATTGAATCTTTTGTAACGAAGATCACACTTTGACTGTCACAAAATACTGTATTG
ATTTGAAGGTCTTTATTGAGTTCACTAAAGAGCCCCTTTAACCAGATAGGTTCTTTACAAGCGAT
AGTAGTTTGCAAGATGGCTTTCCAACTAATTTCACAACCCCTAATTGTAAAGACATAACCCGTGA
GAGATCTCCTTTTATCAAGGTCTCTGGAAAAATCAGTATCAACATGCCCAATGAATCTATCTCTA
TTTCTTCCAAACTATAACCAAACATCAGTAGTGCCTCGTAAGTATCTCAAAAGT
Found at i:10205086 original size:18 final size:18
Alignment explanation
Indices: 10205039--10205086 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
10205029 AGGTGATACC
* *
10205039 TTTACTTTATTTTACTTAA
1 TTTACTTT-TATTAATTAA
10205058 TTTA-TTATTATTAATTAA
1 TTTACTT-TTATTAATTAA
10205076 TTTACTTTTAT
1 TTTACTTTTAT
10205087 AACCTTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTACTTTTATTAATTAA
Found at i:10206683 original size:18 final size:18
Alignment explanation
Indices: 10206660--10206706 Score: 94
Period size: 18 Copynumber: 2.6 Consensus size: 18
10206650 GAGTTAAACG
10206660 AATCGAGTTATACAAGTT
1 AATCGAGTTATACAAGTT
10206678 AATCGAGTTATACAAGTT
1 AATCGAGTTATACAAGTT
10206696 AATCGAGTTAT
1 AATCGAGTTAT
10206707 TCGAATCAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (18 bp):
AATCGAGTTATACAAGTT
Found at i:10206781 original size:9 final size:9
Alignment explanation
Indices: 10206764--10206800 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
10206754 TGAGTTTTCG
10206764 AATTCGAAT
1 AATTCGAAT
*
10206773 AACTCGAAT
1 AATTCGAAT
*
10206782 AATTCAAAT
1 AATTCGAAT
10206791 AATTCGAAT
1 AATTCGAAT
10206800 A
1 A
10206801 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:10207180 original size:17 final size:17
Alignment explanation
Indices: 10207153--10207213 Score: 61
Period size: 17 Copynumber: 3.4 Consensus size: 17
10207143 ACTCCCCCTA
10207153 TTTACTTTCCCTCAAACT
1 TTTACTTTCCC-CAAACT
*
10207171 TTTA-TTTCCCAAAACTT
1 TTTACTTTCCCCAAAC-T
*
10207188 TTTATTTTCCCCCTAAACT
1 TTTACTTT-CCCC-AAACT
10207207 TTTACTT
1 TTTACTT
10207214 CTCACCCTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
16 4 0.11
17 11 0.31
18 7 0.19
19 10 0.28
20 4 0.11
ACGTcount: A:0.23, C:0.28, G:0.00, T:0.49
Consensus pattern (17 bp):
TTTACTTTCCCCAAACT
Found at i:10207355 original size:17 final size:17
Alignment explanation
Indices: 10207335--10207381 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
10207325 CAAATTTTAT
10207335 ATTATTTATATTATTGA
1 ATTATTTATATTATTGA
10207352 ATTATTTAGTCA-TATTGA
1 ATTATTTA-T-ATTATTGA
10207370 A-TATTTATATTA
1 ATTATTTATATTA
10207382 AAATTGAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.04
16 3 0.11
17 14 0.52
18 8 0.30
19 1 0.04
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.55
Consensus pattern (17 bp):
ATTATTTATATTATTGA
Found at i:10207835 original size:5 final size:5
Alignment explanation
Indices: 10207825--10207850 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
10207815 CTCGAAAATT
10207825 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
10207851 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:10211706 original size:66 final size:66
Alignment explanation
Indices: 10211600--10211733 Score: 232
Period size: 66 Copynumber: 2.0 Consensus size: 66
10211590 GTTTCAACCT
*
10211600 TTGGATTTATCAAATCAACCTTTCAATCCTCCTAAACCTTCTATGGAGGAACCTCCTACATTAGA
1 TTGGATTTATCAAATCAACCTTTCAATCCTCCTAAACCTTCTATGGAGGAACCTCCTACACTAGA
10211665 G
66 G
* * *
10211666 TTGGATTTATCAAATCAACCTTTCAATCCTTCTAAACCTTCTATGGAGGAACTTCTTACACTAGA
1 TTGGATTTATCAAATCAACCTTTCAATCCTCCTAAACCTTCTATGGAGGAACCTCCTACACTAGA
10211731 G
66 G
10211732 TT
1 TT
10211734 ACAACCTTTG
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (66 bp):
TTGGATTTATCAAATCAACCTTTCAATCCTCCTAAACCTTCTATGGAGGAACCTCCTACACTAGA
G
Found at i:10215745 original size:24 final size:24
Alignment explanation
Indices: 10215713--10215758 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
10215703 CATTTGTTGA
*
10215713 TGCTGCTGAAG-AGCCCACTCAAGC
1 TGCTACTGAAGCA-CCCACTCAAGC
10215737 TGCTACTGAAGCACCCACTCAA
1 TGCTACTGAAGCACCCACTCAA
10215759 CCTATTGTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 19 0.95
25 1 0.05
ACGTcount: A:0.28, C:0.35, G:0.20, T:0.17
Consensus pattern (24 bp):
TGCTACTGAAGCACCCACTCAAGC
Found at i:10217175 original size:20 final size:21
Alignment explanation
Indices: 10217147--10217189 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
10217137 TTAGTTTAAT
*
10217147 CTAGTAATAAAGTA-AATGAG
1 CTAGAAATAAAGTAGAATGAG
*
10217167 CTAGAAATAAATTAGAATGAG
1 CTAGAAATAAAGTAGAATGAG
10217188 CT
1 CT
10217190 CAAATGAGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.49, C:0.07, G:0.19, T:0.26
Consensus pattern (21 bp):
CTAGAAATAAAGTAGAATGAG
Found at i:10217194 original size:20 final size:20
Alignment explanation
Indices: 10217152--10217194 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
10217142 TTAATCTAGT
*
10217152 AATAAAGTAAATGAGCTAGA
1 AATAAAGTAAATGAGCTACA
*
10217172 AATAAATTAGAATGAGCT-CA
1 AATAAAGTA-AATGAGCTACA
10217192 AAT
1 AAT
10217195 GAGCTGATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.53, C:0.07, G:0.16, T:0.23
Consensus pattern (20 bp):
AATAAAGTAAATGAGCTACA
Found at i:10218916 original size:36 final size:36
Alignment explanation
Indices: 10218876--10218967 Score: 105
Period size: 36 Copynumber: 2.5 Consensus size: 36
10218866 ATTCTCGTTC
*
10218876 TCTTTTTCAATTTGCTTTTCTTGCTCGCA-CTCTTTT
1 TCTTTTTCAATTT-CTTTTCTTGCTCCCACCTCTTTT
* * *
10218912 TCTTTTTCAATCTCATTTGCTTTCTCCCACTCTCTTTT
1 TCTTTTTCAATTTC-TTTTCTTGCTCCCAC-CTCTTTT
*
10218950 TCTTTTTAAATTTCTTTT
1 TCTTTTTCAATTTCTTTT
10218968 TCTTTCATCT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
35 1 0.02
36 23 0.50
37 3 0.07
38 19 0.41
ACGTcount: A:0.11, C:0.25, G:0.04, T:0.60
Consensus pattern (36 bp):
TCTTTTTCAATTTCTTTTCTTGCTCCCACCTCTTTT
Found at i:10219961 original size:16 final size:16
Alignment explanation
Indices: 10219927--10219961 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
10219917 AACTTCGTAA
* *
10219927 AATTTTTTTATACTTC
1 AATTTTTTTAAACTAC
10219943 AATTTTTTTAAACTAC
1 AATTTTTTTAAACTAC
10219959 AAT
1 AAT
10219962 AAGATGAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.54
Consensus pattern (16 bp):
AATTTTTTTAAACTAC
Found at i:10223812 original size:139 final size:140
Alignment explanation
Indices: 10223606--10223870 Score: 435
Period size: 139 Copynumber: 1.9 Consensus size: 140
10223596 CATGGGATAT
** *
10223606 TTGGATTTACCCTAGGGAAAAAAATTATAAAAAGTCAAAGGAGGAAACCCTAAAGGGGGCAAACA
1 TTGGATTTACCCTAGGGAAAAAAATTATAAAAAACCAAAAGAGGAAACCCTAAAGGGGGCAAACA
* *
10223671 AAAAGAAGAAGAGAGATCCTTAGGTGAACACAAAA-A-AGTGGAGATCCAGAGGCAACAATAAAT
66 AAAA-AAGAAGAAAGATCCTTAGGCGAACACAAAAGAGAGTGGAGATCCAGAGGCAACAATAAAT
10223734 ATCATGAGCAG
130 ATCATGAGCAG
*
10223745 TTGGATTTACCCTAGGGAAAAAGATTATAAAAAACCAAAAGAGGAAACCCTAAAGGGGGCAAACA
1 TTGGATTTACCCTAGGGAAAAAAATTATAAAAAACCAAAAGAGGAAACCCTAAAGGGGGCAAACA
* *
10223810 AAAAAAGAAGAAAGATCCTTAGGCGAACACAAAAGAGTGTGGAGATCCGGAGGCAACAATA
66 AAAAAAGAAGAAAGATCCTTAGGCGAACACAAAAGAGAGTGGAGATCCAGAGGCAACAATA
10223871 GAAGGTAGCA
Statistics
Matches: 116, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
138 28 0.24
139 66 0.57
140 22 0.19
ACGTcount: A:0.48, C:0.14, G:0.24, T:0.14
Consensus pattern (140 bp):
TTGGATTTACCCTAGGGAAAAAAATTATAAAAAACCAAAAGAGGAAACCCTAAAGGGGGCAAACA
AAAAAAGAAGAAAGATCCTTAGGCGAACACAAAAGAGAGTGGAGATCCAGAGGCAACAATAAATA
TCATGAGCAG
Found at i:10224335 original size:159 final size:159
Alignment explanation
Indices: 10224046--10224364 Score: 575
Period size: 159 Copynumber: 2.0 Consensus size: 159
10224036 ACGATGTTGG
*
10224046 ATACTATTTTGAACTGAAATTTTAATCTCCAACCCATGAATTAAACCTCATAGGGTTGGGATTAC
1 ATACTATTTTGAACTGAAATTTTAATCTCCAACCCATGAATTAAACCTCATAGGGTTGAGATTAC
* * *
10224111 ATGATGGAACTTTTATTTCCTTTAATGGTTGAAGCATATATTTGATTTAATCTACTGTTTCATTC
66 ATGATGAAACTTTTATTTCCTTTAATAGTTGAAACATATATTTGATTTAATCTACTGTTTCATTC
10224176 AATTGTTTTTATTTCCTAACTGTATGTGT
131 AATTGTTTTTATTTCCTAACTGTATGTGT
* *
10224205 ATACTATTTTGAACTGAAATTTTAATCTCCAACCCATGAATTAAATCTCATAGGGTTTAGATTAC
1 ATACTATTTTGAACTGAAATTTTAATCTCCAACCCATGAATTAAACCTCATAGGGTTGAGATTAC
10224270 ATGATGAAACTTTTATTTCCTTTAATAGTTGAAACATATATTTGATTTAATCTACTGTTTCATTC
66 ATGATGAAACTTTTATTTCCTTTAATAGTTGAAACATATATTTGATTTAATCTACTGTTTCATTC
*
10224335 AATTGTTTTTATTTCGTAACTGTATGTGT
131 AATTGTTTTTATTTCCTAACTGTATGTGT
10224364 A
1 A
10224365 CATTCTTTAG
Statistics
Matches: 153, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
159 153 1.00
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.44
Consensus pattern (159 bp):
ATACTATTTTGAACTGAAATTTTAATCTCCAACCCATGAATTAAACCTCATAGGGTTGAGATTAC
ATGATGAAACTTTTATTTCCTTTAATAGTTGAAACATATATTTGATTTAATCTACTGTTTCATTC
AATTGTTTTTATTTCCTAACTGTATGTGT
Found at i:10230987 original size:19 final size:20
Alignment explanation
Indices: 10230955--10230994 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
10230945 TTTTTTTTAA
*
10230955 TATTTAATTAATTTTAGTTT
1 TATTTAATTAATTTTAATTT
*
10230975 TATTT-ATTTATTTTAATTT
1 TATTTAATTAATTTTAATTT
10230994 T
1 T
10230995 TTAATTTAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (20 bp):
TATTTAATTAATTTTAATTT
Found at i:10234732 original size:37 final size:37
Alignment explanation
Indices: 10234691--10234866 Score: 298
Period size: 37 Copynumber: 4.8 Consensus size: 37
10234681 TTTGAGTACT
10234691 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
10234728 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
10234765 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
10234802 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
** *
10234839 TCTGATCAAGTGATAAAGTGATAAGTGG
1 TCTGATCAAGAAACAAAGTGATAAGTGG
10234867 TAGCTTCAGC
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
Found at i:10234938 original size:45 final size:46
Alignment explanation
Indices: 10234829--10234952 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
10234819 GTGATAAGTG
* *
10234829 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
10234875 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
10234920 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
10234953 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:10243529 original size:37 final size:37
Alignment explanation
Indices: 10243488--10243701 Score: 392
Period size: 37 Copynumber: 5.8 Consensus size: 37
10243478 TTTGAGTACT
10243488 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
10243525 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
10243562 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
10243599 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
*
10243636 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
** *
10243673 TCTGATCAAGTGATAAAGTGATAAGTGGT
1 TCTGATCAAGAAACAAAGTGATAAGTGGT
10243702 AGCTTTAGCT
Statistics
Matches: 172, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 172 1.00
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
Found at i:10243771 original size:45 final size:46
Alignment explanation
Indices: 10243663--10243786 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
10243653 GTGATAAGTG
* *
10243663 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTA
*
10243709 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGC-CTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTA
10243754 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
10243787 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 22 0.30
46 40 0.54
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTA
Found at i:10255016 original size:16 final size:16
Alignment explanation
Indices: 10254992--10255024 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
10254982 TTATACTTTT
10254992 TAATATTTTTTAAAAA
1 TAATATTTTTTAAAAA
*
10255008 TAATTTTTTTTAAAAA
1 TAATATTTTTTAAAAA
10255024 T
1 T
10255025 TTTTAAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TAATATTTTTTAAAAA
Done.