Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 36 of 205
Found at i:10826303 original size:43 final size:43
Alignment explanation
Indices: 10826234--10826415 Score: 222
Period size: 43 Copynumber: 4.3 Consensus size: 43
10826224 TTCTAAAAAA
* * * * * *
10826234 CGCCGCTAAAGGTC-TATTCTATAGCGGTGTTTGAGGGAAAAA
1 CGCCGCTAAAGGTCTTAGTCTTTAGCGGCGTTTGTGGGGAAAG
* * *
10826276 CGCCGCTAATGGTCATAGTCTTTAGCGGCATTTGTGGGGAAAG
1 CGCCGCTAAAGGTCTTAGTCTTTAGCGGCGTTTGTGGGGAAAG
* * *
10826319 CGCAGCTAAAGGTCTTGGTCTTTAGTGGCGTTTGTGGGGAAAG
1 CGCCGCTAAAGGTCTTAGTCTTTAGCGGCGTTTGTGGGGAAAG
* * *
10826362 CGTCGCTAAAGGTCTTGGTATTTAGCGGCGTTTGTGGGGAAAG
1 CGCCGCTAAAGGTCTTAGTCTTTAGCGGCGTTTGTGGGGAAAG
10826405 CGCCGCTAAAG
1 CGCCGCTAAAG
10826416 TTAGCGACGC
Statistics
Matches: 120, Mismatches: 19, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
42 13 0.11
43 107 0.89
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.27
Consensus pattern (43 bp):
CGCCGCTAAAGGTCTTAGTCTTTAGCGGCGTTTGTGGGGAAAG
Found at i:10827924 original size:44 final size:44
Alignment explanation
Indices: 10827856--10828204 Score: 135
Period size: 44 Copynumber: 8.0 Consensus size: 44
10827846 GAGAGGTAAA
* * * *
10827856 ATCTGTCATCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAG
1 ATCTGTAATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAG
* ** ** *
10827900 ATCTGTAATCTTCAATCTATTCCACTGTTGCCCA-GGAAAGT-AG
1 ATCTGTAATCTTCAATCTACTCCACTACTGCTTAGGGAGA-TAAG
* * ** * * * *
10827943 AATTTCT-GGCTTCAATGTACTCCACTGTAAC--CATAGGGAGGTAAA
1 -ATCTGTAATCTTCAATCTACTCCAC--T-ACTGCTTAGGGAGATAAG
* ** * *
10827988 ATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
1 ATCTGTAATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAG
** * * * * **
10828032 ATCTGTGGT-TTTAATCTATTCCACTGCTACCCAGGGAGAT-AG
1 ATCTGTAATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAG
* * * * * * *
10828074 AAC--TACTGGCTTCAATGTACTCCACTGTAAT-ATTAGGGAGGTAAA
1 ATCTGTAAT--CTTCAATCTACTCCAC--TACTGCTTAGGGAGATAAG
** * *
10828119 ATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
1 ATCTGTAATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAG
* *
10828163 ATCTGTAATCTTCAATCTATTCCACTGA-TGCCTAGGGAGATA
1 ATCTGTAATCTTCAATCTACTCCACT-ACTGCTTAGGGAGATA
10828205 GAACTACCGG
Statistics
Matches: 210, Mismatches: 75, Indels: 40
0.65 0.23 0.12
Matches are distributed among these distances:
40 2 0.01
42 6 0.03
43 59 0.28
44 105 0.50
45 37 0.18
47 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (44 bp):
ATCTGTAATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAG
Found at i:10827935 original size:132 final size:132
Alignment explanation
Indices: 10827776--10828268 Score: 713
Period size: 132 Copynumber: 3.7 Consensus size: 132
10827766 TTTCGTCTGC
* * ** *
10827776 TCTTCAATCTATTCCACTGTTGTCCAGGGA-AGTAGAACTACTGGCTTTAATGTACTTTATTGTA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGA-TAGAACTACTGGCTTCAATGTACTCCACTGTA
* * * * *
10827840 ATCTCAGAGAGGTAAAATCTGTCATCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTG
65 ATCTTAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
10827905 TAA
130 TAA
* * *
10827908 TCTTCAATCTATTCCACTGTTGCCCA-GGAAAGTAGAATTTCTGGCTTCAATGTACTCCACTGTA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGA-TAGAACTACTGGCTTCAATGTACTCCACTGTA
* *
10827972 ACCATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
65 ATCTTAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
**
10828037 TGG
130 TAA
* * *
10828040 T-TTTAATCTATTCCACTGCTACCCAGGGAGATAGAACTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAACTACTGGCTTCAATGTACTCCACTGTAA
* *
10828104 TATTAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
66 TCTTAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
10828169 AA
131 AA
* * *
10828171 TCTTCAATCTATTCCACTGATGCCTAGGGAGATAGAACTACCGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAACTACTGGCTTCAATGTACTCCACTGTAA
*
10828236 TCTTAGGGAGGTAAAATCCGCCATCTTCAATCT
66 TCTTAGGGAGGTAAAATCCGCCATCTTCGATCT
10828269 TCAATCTATT
Statistics
Matches: 322, Mismatches: 36, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
131 117 0.36
132 205 0.64
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (132 bp):
TCTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAACTACTGGCTTCAATGTACTCCACTGTAA
TCTTAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
AA
Found at i:10828243 original size:44 final size:45
Alignment explanation
Indices: 10828064--10828245 Score: 124
Period size: 44 Copynumber: 4.1 Consensus size: 45
10828054 ACTGCTACCC
** * *
10828064 AGGGAGATAGAACTACTGGCTTCAATGTACTCCACTGTAAT-ATT
1 AGGGAGATAGAACTACCAGCTTCAATCTACTCCACTGTAATGCTT
* * * * * * *
10828108 AGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCAC--TACTGCTT
1 AGGGAGATAGAA-CTACCAGCTTCAATCTACTCCACTGTAATGCTT
* *** * * *
10828152 AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTG--ATGCCT
1 AGGGAGAT-AGAACTACCAGCTTCAATCTACTCCACTGTAATGCTT
* *
10828196 AGGGAGATAGAACTACCGGCTTCAATGTACTCCACTGTAAT-CTT
1 AGGGAGATAGAACTACCAGCTTCAATCTACTCCACTGTAATGCTT
10828240 AGGGAG
1 AGGGAG
10828246 GTAAAATCCG
Statistics
Matches: 101, Mismatches: 30, Indels: 14
0.70 0.21 0.10
Matches are distributed among these distances:
43 24 0.24
44 57 0.56
45 20 0.20
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (45 bp):
AGGGAGATAGAACTACCAGCTTCAATCTACTCCACTGTAATGCTT
Found at i:10828248 original size:263 final size:263
Alignment explanation
Indices: 10827781--10828268 Score: 755
Period size: 263 Copynumber: 1.9 Consensus size: 263
10827771 TCTGCTCTTC
* ** * ** * *
10827781 AATCTATTCCACTGTTGTCCAGGGAAGTAGAACTACTGGCTTTAATGTACTTTATTGTAATCTCA
1 AATCTATTCCACTGCTACCCAGGGAAGTAGAACTACTGGCTTCAATGTACTCCACTGTAATATCA
* *
10827846 GAGAGGTAAAATCTGTCATCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATCT
66 GAGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCT
* * * *
10827911 TCAATCTATTCCACTGTTGCCCAGGAAAGTAGAATTTCTGGCTTCAATGTACTCCACTGTAACCA
131 TCAATCTATTCCACTGATGCCCAGGAAAGTAGAACTACCGGCTTCAATGTACTCCACTGTAACCA
*
10827976 TAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGT
196 TAGGGAGGTAAAATCCGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGT
10828041 TTT
261 TTT
*
10828044 AATCTATTCCACTGCTACCCAGGG-AGATAGAACTACTGGCTTCAATGTACTCCACTGTAATATT
1 AATCTATTCCACTGCTACCCAGGGAAG-TAGAACTACTGGCTTCAATGTACTCCACTGTAATATC
*
10828108 AGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
65 AGAGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
* * *
10828173 TTCAATCTATTCCACTGATGCCTAGG-GAGATAGAACTACCGGCTTCAATGTACTCCACTGTAAT
130 TTCAATCTATTCCACTGATGCCCAGGAAAG-TAGAACTACCGGCTTCAATGTACTCCACTGTAAC
*
10828237 CTTAGGGAGGTAAAATCCGCCATCTTCAATCT
194 CATAGGGAGGTAAAATCCGCCATCTTCAATCT
10828269 TCAATCTATT
Statistics
Matches: 202, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
262 4 0.02
263 198 0.98
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (263 bp):
AATCTATTCCACTGCTACCCAGGGAAGTAGAACTACTGGCTTCAATGTACTCCACTGTAATATCA
GAGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCT
TCAATCTATTCCACTGATGCCCAGGAAAGTAGAACTACCGGCTTCAATGTACTCCACTGTAACCA
TAGGGAGGTAAAATCCGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGT
TTT
Found at i:10828340 original size:96 final size:95
Alignment explanation
Indices: 10828169--10828349 Score: 274
Period size: 96 Copynumber: 1.9 Consensus size: 95
10828159 TAAGATCTGT
* * *
10828169 AATCTTCAATCTATTCCACTGATGCCTAGGGAGATAGAACTACCGGCTTCAATGTACTCCACTGT
1 AATCTTCAATCTATTCCACTGATACCCAGAGAGATAGAACTACCGGCTTCAATGTACTCCACTGT
*
10828234 AATCTTAGGGAGGTAAAATCCGCCATCTTC
66 AATCTCAGGGAGGTAAAATCCGCCATCTTC
* *
10828264 AATCTTCAATCTATTCCACTG-TCAACCCAGAGAGATAGAATTATCGGCTTCAATGTACTCCACT
1 AATCTTCAATCTATTCCACTGAT--ACCCAGAGAGATAGAACTACCGGCTTCAATGTACTCCACT
*
10828328 GTAGTCTCAGGGAGGTAAAATC
64 GTAATCTCAGGGAGGTAAAATC
10828350 TACCATATTT
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
94 1 0.01
95 21 0.27
96 55 0.71
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (95 bp):
AATCTTCAATCTATTCCACTGATACCCAGAGAGATAGAACTACCGGCTTCAATGTACTCCACTGT
AATCTCAGGGAGGTAAAATCCGCCATCTTC
Found at i:10828429 original size:45 final size:46
Alignment explanation
Indices: 10828380--10828494 Score: 139
Period size: 44 Copynumber: 2.6 Consensus size: 46
10828370 GCTGTCGATG
* * * *
10828380 CAGGAGGGTAAGATCTGCTATCTTTAG-TCTGCTCCACTGTTAGTA
1 CAGGAAGGCAAGATCTGCTATCTTTAGATCTGCTCCACCGTCAGTA
* *
10828425 CAGGAAGGCAAGA-CTGGCT-TC-TTCGATCTGCTTCACCGTCAGTA
1 CAGGAAGGCAAGATCT-GCTATCTTTAGATCTGCTCCACCGTCAGTA
10828469 CAGGAAGGCAAGATCTGCTATCTTTA
1 CAGGAAGGCAAGATCTGCTATCTTTA
10828495 ACCAGCTCCA
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
43 3 0.05
44 35 0.60
45 18 0.31
46 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (46 bp):
CAGGAAGGCAAGATCTGCTATCTTTAGATCTGCTCCACCGTCAGTA
Found at i:10828917 original size:43 final size:43
Alignment explanation
Indices: 10828868--10829004 Score: 111
Period size: 42 Copynumber: 3.2 Consensus size: 43
10828858 CAACTGATGG
10828868 AGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAATGTAGGA
1 AGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAATGTAGGA
* * * * * * * * *
10828911 AGGCAA-GATCTGCTATCTTTGACCAGCTCCACTG-CAACCGATA-G-
1 AGGCAAGGTTTTG-T-T-TTCGATCTGCTTCGCTGTTAA-TG-TAGGA
*
10828955 AGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGA
1 AGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAATGTAGGA
10828998 AGGCAAG
1 AGGCAAG
10829005 ATCTGCTATC
Statistics
Matches: 66, Mismatches: 19, Indels: 18
0.64 0.18 0.17
Matches are distributed among these distances:
41 1 0.02
42 18 0.27
43 17 0.26
44 10 0.15
45 18 0.27
46 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (43 bp):
AGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAATGTAGGA
Found at i:10829405 original size:87 final size:87
Alignment explanation
Indices: 10828446--10829395 Score: 1407
Period size: 87 Copynumber: 10.9 Consensus size: 87
10828436 GACTGGCTTC
* * * * *
10828446 TTCGATCTGCTTCACCGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
10828511 CCGATGGAGGCAAGGTTTTGTT
66 CCGATGGAGGCAAGGTTTTGTT
*
10828533 TTCGATCTGCTTCGCTATTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
* *
10828598 CCGATGAAGGTAAGGTTTTGTT
66 CCGATGGAGGCAAGGTTTTGTT
* * * * **
10828620 TTTGATCTGCTTTGCTGTTAATGCAGGAAGGCAAGATCTACTATTTTTAACCAGCTCCACTATAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
10828685 CCGA-GAGAGGCAAGGTTTGTGTT
66 CCGATG-GAGGCAAGGTTT-TGTT
* * * ** * *
10828708 TTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTATTGTCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
* * *
10828773 ACGAGGGAGGCAAGGTTTGTGTC
66 CCGATGGAGGCAAGGTTT-TGTT
* * * * * *
10828796 TTCAATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
10828861 CTGATGGAGGCAAGGTTTTGTT
66 CCGATGGAGGCAAGGTTTTGTT
* *
10828883 TTCGATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATCTGCTATCTTTGACCAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
10828948 CCGATAGAGGCAAGGTTTTGTT
66 CCGATGGAGGCAAGGTTTTGTT
*
10828970 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTGACCAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
10829035 CCGATGGAGGCAATGTTTTGTT
66 CCGATGGAGGCAAGGTTTTGTT
* * * *
10829057 TTCGATCTGCTTCACTATTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCATTGCAG
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
10829122 CCGATGGAGGCAAGGTTTTGTT
66 CCGATGGAGGCAAGGTTTTGTT
* * * * *
10829144 TTTGATTTGCTTCACTGTTAATGCAGGAAGGCAATATCTGCTATCTTTAACCAGCTCCACTGCAG
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
10829209 TCGATGGAGGCAAGGTTTTGTT
66 CCGATGGAGGCAAGGTTTTGTT
*
10829231 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAG
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
10829296 CCGATGGAGGCAAGGTTTTGTT
66 CCGATGGAGGCAAGGTTTTGTT
* * *
10829318 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGTAAGATCTACTATCTTTGACCAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
10829383 CTGATGGAGGCAA
66 CCGATGGAGGCAA
10829396 TGATCTGTTT
Statistics
Matches: 788, Mismatches: 72, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
86 1 0.00
87 632 0.80
88 154 0.20
89 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30
Consensus pattern (87 bp):
TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
CCGATGGAGGCAAGGTTTTGTT
Found at i:10830029 original size:108 final size:108
Alignment explanation
Indices: 10829840--10830035 Score: 311
Period size: 108 Copynumber: 1.8 Consensus size: 108
10829830 GAAAAATGCT
* *
10829840 TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
1 TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTATTGAGAGCAAAGCTCTAAACAAACAAAT
*
10829905 CAATCAAGATAGCAAATTTTGCTGAGATACGAGATGTATAAGA
66 CAATCAAGATAACAAATTTTGCTGAGATACGAGATGTATAAGA
* * * **
10829948 TGAAAAAGATTATCACAATGGATAAGATGAAAATTTATTGAGAGCAAAGCTCTAAATGAACAAAT
1 TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTATTGAGAGCAAAGCTCTAAACAAACAAAT
*
10830013 TAATCAAGATAACAAATTTTGCT
66 CAATCAAGATAACAAATTTTGCT
10830036 AGAATACAAA
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
108 79 1.00
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.26
Consensus pattern (108 bp):
TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTATTGAGAGCAAAGCTCTAAACAAACAAAT
CAATCAAGATAACAAATTTTGCTGAGATACGAGATGTATAAGA
Found at i:10830099 original size:45 final size:43
Alignment explanation
Indices: 10830001--10830101 Score: 103
Period size: 45 Copynumber: 2.3 Consensus size: 43
10829991 GCAAAGCTCT
* *
10830001 AAATGAACAAATTAATCAAGATAACAAATTTTGCTAGAATACA
1 AAATGAATAAATTAATCAAGATAACAAATTTTGCTAAAATACA
** ** *
10830044 AAATGAGAATAAATTAATCAAGATGGCGTATTTTGTTAAAAATACAA
1 AAAT--GAATAAATTAATCAAGATAACAAATTTTGCT-AAAATAC-A
10830091 AAATGAATAAA
1 AAATGAATAAA
10830102 ATTGAAATAG
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
43 4 0.09
45 32 0.68
46 6 0.13
47 5 0.11
ACGTcount: A:0.53, C:0.08, G:0.12, T:0.27
Consensus pattern (43 bp):
AAATGAATAAATTAATCAAGATAACAAATTTTGCTAAAATACA
Found at i:10830389 original size:13 final size:12
Alignment explanation
Indices: 10830371--10830430 Score: 54
Period size: 13 Copynumber: 5.0 Consensus size: 12
10830361 TGGCCTCTCT
10830371 TTTTTCTCTTTTC
1 TTTTTCT-TTTTC
10830384 TTTTTCATTTTTC
1 TTTTTC-TTTTTC
*
10830397 TTTTCCTTTTT-
1 TTTTTCTTTTTC
*
10830408 TCTTTT-TGTTTC
1 T-TTTTCTTTTTC
10830420 TTTTT-TTTTTC
1 TTTTTCTTTTTC
10830431 AAGTGAAGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
11 14 0.35
12 9 0.22
13 16 0.40
14 1 0.03
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.80
Consensus pattern (12 bp):
TTTTTCTTTTTC
Found at i:10830400 original size:18 final size:17
Alignment explanation
Indices: 10830372--10830430 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 17
10830362 GGCCTCTCTT
10830372 TTTTCTCTTTTCTTTTTC
1 TTTT-TCTTTTCTTTTTC
10830390 ATTTTTCTTTTCCTTTTTTC
1 -TTTTTCTTTT-C-TTTTTC
*
10830410 TTTTT-GTTTCTTTTT-
1 TTTTTCTTTTCTTTTTC
10830425 TTTTTC
1 TTTTTC
10830431 AAGTGAAGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
15 5 0.14
16 5 0.14
17 1 0.03
18 9 0.25
19 10 0.28
20 6 0.17
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTTCTTTTCTTTTTC
Found at i:10830414 original size:7 final size:7
Alignment explanation
Indices: 10830368--10830414 Score: 53
Period size: 7 Copynumber: 7.0 Consensus size: 7
10830358 CCTTGGCCTC
10830368 TCTTTTT
1 TCTTTTT
*
10830375 TCTCTTT
1 TCTTTTT
10830382 TC-TTTT
1 TCTTTTT
*
10830388 TCATTTT
1 TCTTTTT
10830395 TC-TTTT
1 TCTTTTT
*
10830401 CCTTTTT
1 TCTTTTT
10830408 TCTTTTT
1 TCTTTTT
10830415 GTTTCTTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
6 10 0.29
7 24 0.71
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (7 bp):
TCTTTTT
Found at i:10830885 original size:15 final size:15
Alignment explanation
Indices: 10830865--10830916 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
10830855 CCGGTAGAGG
10830865 TTTTTTTCTTTTATT
1 TTTTTTTCTTTTATT
10830880 TTTTTTTCTTTTATT
1 TTTTTTTCTTTTATT
* *
10830895 TTTGTTT-TTTTGTT
1 TTTTTTTCTTTTATT
10830909 GTTTTTTT
1 -TTTTTTT
10830917 GTTGTTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
14 6 0.18
15 27 0.82
ACGTcount: A:0.04, C:0.04, G:0.06, T:0.87
Consensus pattern (15 bp):
TTTTTTTCTTTTATT
Found at i:10830896 original size:20 final size:20
Alignment explanation
Indices: 10830879--10830926 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
10830869 TTTCTTTTAT
10830879 TTTTTTTTCTTTTATTTTTG
1 TTTTTTTTCTTTTATTTTTG
*
10830899 TTTTTTTGT-TGTT-TTTTTG
1 TTTTTTT-TCTTTTATTTTTG
10830918 TTGTTTTTT
1 TT-TTTTTT
10830927 TGCCTCCACT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 9 0.36
20 15 0.60
21 1 0.04
ACGTcount: A:0.02, C:0.02, G:0.10, T:0.85
Consensus pattern (20 bp):
TTTTTTTTCTTTTATTTTTG
Found at i:10830910 original size:11 final size:11
Alignment explanation
Indices: 10830878--10830928 Score: 70
Period size: 11 Copynumber: 4.7 Consensus size: 11
10830868 TTTTCTTTTA
*
10830878 TTTTTTT-TTC
1 TTTTTTTGTTG
10830888 TTTTATTT-TTG
1 TTTT-TTTGTTG
10830899 TTTTTTTGTTG
1 TTTTTTTGTTG
10830910 TTTTTTTGTTG
1 TTTTTTTGTTG
10830921 TTTTTTTG
1 TTTTTTTG
10830929 CCTCCACTGA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
10 7 0.18
11 31 0.82
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (11 bp):
TTTTTTTGTTG
Found at i:10830916 original size:14 final size:13
Alignment explanation
Indices: 10830864--10830927 Score: 58
Period size: 14 Copynumber: 4.6 Consensus size: 13
10830854 CCCGGTAGAG
10830864 GTTTTTTTCTTTTAT
1 GTTTTTTT-TTTT-T
10830879 -TTTTTTTTCTTTT
1 GTTTTTTTT-TTTT
*
10830892 ATTTTTGTTTTTTT
1 GTTTTT-TTTTTTT
*
10830906 GTTGTTTTTTTGTT
1 GTT-TTTTTTTTTT
10830920 GTTTTTTT
1 GTTTTTTT
10830928 GCCTCCACTG
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
13 7 0.16
14 30 0.70
15 6 0.14
ACGTcount: A:0.03, C:0.03, G:0.09, T:0.84
Consensus pattern (13 bp):
GTTTTTTTTTTTT
Found at i:10842056 original size:9 final size:9
Alignment explanation
Indices: 10842042--10842114 Score: 65
Period size: 9 Copynumber: 7.7 Consensus size: 9
10842032 ACTTATTTTT
10842042 ATTTTTAAA
1 ATTTTTAAA
10842051 ATTTTTAAATA
1 ATTTTT-AA-A
*
10842062 ATTTTTACA
1 ATTTTTAAA
10842071 ATTTTTATAA
1 ATTTTTA-AA
*
10842081 ATTTTTATA
1 ATTTTTAAA
* *
10842090 AGTTTTATA
1 ATTTTTAAA
*
10842099 AGTTTTAAA
1 ATTTTTAAA
10842108 AGTTTTT
1 A-TTTTT
10842115 CTAATATTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
9 32 0.59
10 15 0.28
11 7 0.13
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.58
Consensus pattern (9 bp):
ATTTTTAAA
Found at i:10842076 original size:10 final size:10
Alignment explanation
Indices: 10842042--10842125 Score: 61
Period size: 9 Copynumber: 8.6 Consensus size: 10
10842032 ACTTATTTTT
10842042 ATTTTTA-AA
1 ATTTTTATAA
*
10842051 ATTTTTAAATA
1 ATTTTTATA-A
*
10842062 ATTTTTA-CA
1 ATTTTTATAA
10842071 ATTTTTATAA
1 ATTTTTATAA
10842081 ATTTTTAT-A
1 ATTTTTATAA
*
10842090 AGTTTTAT-A
1 ATTTTTATAA
*
10842099 AGTTTTA-AA
1 ATTTTTATAA
*
10842108 AGTTTTTCTAA
1 A-TTTTTATAA
10842119 TATTTTT
1 -ATTTTT
10842126 TTATAAAAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
9 33 0.52
10 14 0.22
11 15 0.24
12 1 0.02
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (10 bp):
ATTTTTATAA
Found at i:10842083 original size:19 final size:19
Alignment explanation
Indices: 10842042--10842125 Score: 80
Period size: 19 Copynumber: 4.3 Consensus size: 19
10842032 ACTTATTTTT
*
10842042 ATTTTTAAAATTTTTAAATA
1 ATTTTTAAAATTTTTATA-A
*
10842062 ATTTTTACAATTTTTATAA
1 ATTTTTAAAATTTTTATAA
* *
10842081 ATTTTTATAAGTTTTAT-A
1 ATTTTTAAAATTTTTATAA
* *
10842099 AGTTTTAAAAGTTTTTCTAA
1 ATTTTTAAAA-TTTTTATAA
10842119 TATTTTT
1 -ATTTTT
10842126 TTATAAAAAT
Statistics
Matches: 52, Mismatches: 9, Indels: 5
0.79 0.14 0.08
Matches are distributed among these distances:
18 9 0.17
19 21 0.40
20 17 0.33
21 5 0.10
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTTTAAAATTTTTATAA
Found at i:10842227 original size:11 final size:10
Alignment explanation
Indices: 10842164--10842239 Score: 56
Period size: 10 Copynumber: 8.1 Consensus size: 10
10842154 TTTCTTTTCA
*
10842164 TTTATATAAT
1 TTTATATATT
*
10842174 TTTGTA-ATT
1 TTTATATATT
10842183 TTTATA-A--
1 TTTATATATT
10842190 TTTATATATT
1 TTTATATATT
*
10842200 TATT-TCTATT
1 T-TTATATATT
10842210 TTTATATATT
1 TTTATATATT
10842220 TTTA-ATATT
1 TTTATATATT
* *
10842229 TATATACATT
1 TTTATATATT
10842239 T
1 T
10842240 GATAAAAGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
7 6 0.11
8 1 0.02
9 18 0.34
10 26 0.49
11 2 0.04
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (10 bp):
TTTATATATT
Found at i:10845030 original size:45 final size:45
Alignment explanation
Indices: 10844925--10845053 Score: 179
Period size: 45 Copynumber: 2.9 Consensus size: 45
10844915 TCCAAATTTA
* *
10844925 CAGACAAGCTACCATGTAGGTTGTGGA-TAAACTACCAATATTCG
1 CAGACAAGCTACCATGTAGGTTGTGGACGAAACCACCAATATTCG
* * * *
10844969 TAGGCAAGCTATCATGTAGGTTATGGACGAAACCACCAATATTCG
1 CAGACAAGCTACCATGTAGGTTGTGGACGAAACCACCAATATTCG
* *
10845014 CAGACAAGTTGCCATGTAGGTTGTGGACGAAACCACCAAT
1 CAGACAAGCTACCATGTAGGTTGTGGACGAAACCACCAAT
10845054 TCTTCTCATT
Statistics
Matches: 72, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
44 23 0.32
45 49 0.68
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.23
Consensus pattern (45 bp):
CAGACAAGCTACCATGTAGGTTGTGGACGAAACCACCAATATTCG
Found at i:10846503 original size:16 final size:17
Alignment explanation
Indices: 10846484--10846515 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
10846474 AGGGAAATGG
10846484 AAAAAAAGAAA-GAAAA
1 AAAAAAAGAAATGAAAA
10846500 AAAAAAAGAAATGAAA
1 AAAAAAAGAAATGAAA
10846516 TGAATGTGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.03
Consensus pattern (17 bp):
AAAAAAAGAAATGAAAA
Found at i:10850724 original size:12 final size:12
Alignment explanation
Indices: 10850709--10850733 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10850699 ACTTTCCACC
10850709 ACAATCATCAGA
1 ACAATCATCAGA
10850721 ACAATCATCAGA
1 ACAATCATCAGA
10850733 A
1 A
10850734 ACTCCCTCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.08, T:0.16
Consensus pattern (12 bp):
ACAATCATCAGA
Found at i:10851615 original size:20 final size:22
Alignment explanation
Indices: 10851578--10851617 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
10851568 ACTGCCCAAC
*
10851578 AAAGAAGAAAAGGCATTTTCGT
1 AAAGAAGAAAAAGCATTTTCGT
10851600 AAAGAA-AAAAAG-ATTTTC
1 AAAGAAGAAAAAGCATTTTC
10851618 CCGAGTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 5 0.29
22 6 0.35
ACGTcount: A:0.53, C:0.07, G:0.17, T:0.23
Consensus pattern (22 bp):
AAAGAAGAAAAAGCATTTTCGT
Found at i:10855700 original size:12 final size:12
Alignment explanation
Indices: 10855683--10855737 Score: 60
Period size: 12 Copynumber: 4.8 Consensus size: 12
10855673 GCAGTCATCC
10855683 TTTCTTCTTCTT
1 TTTCTTCTTCTT
*
10855695 TTTCTTTTTCTT
1 TTTCTTCTTCTT
*
10855707 TTCCTTCTTC--
1 TTTCTTCTTCTT
* *
10855717 CTTCTTCTTTTT
1 TTTCTTCTTCTT
10855729 TTTCTTCTT
1 TTTCTTCTT
10855738 TCAATAATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
10 7 0.21
12 27 0.79
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTCTTCTTCTT
Found at i:10855721 original size:22 final size:22
Alignment explanation
Indices: 10855696--10855737 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
10855686 CTTCTTCTTT
10855696 TTCTT-TTTCTTTTCCTTCTTCC
1 TTCTTCTTT-TTTTCCTTCTTCC
*
10855718 TTCTTCTTTTTTTTCTTCTT
1 TTCTTCTTTTTTTCCTTCTT
10855738 TCAATAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (22 bp):
TTCTTCTTTTTTTCCTTCTTCC
Found at i:10856444 original size:46 final size:46
Alignment explanation
Indices: 10856391--10856478 Score: 176
Period size: 46 Copynumber: 1.9 Consensus size: 46
10856381 TAACGTTCAC
10856391 CAGGACGTGTCCAAGTTGCAAGCCGAACTGGGGCGTTTAGAATCAG
1 CAGGACGTGTCCAAGTTGCAAGCCGAACTGGGGCGTTTAGAATCAG
10856437 CAGGACGTGTCCAAGTTGCAAGCCGAACTGGGGCGTTTAGAA
1 CAGGACGTGTCCAAGTTGCAAGCCGAACTGGGGCGTTTAGAA
10856479 GCTAAATTGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.26, C:0.22, G:0.33, T:0.19
Consensus pattern (46 bp):
CAGGACGTGTCCAAGTTGCAAGCCGAACTGGGGCGTTTAGAATCAG
Found at i:10863247 original size:31 final size:33
Alignment explanation
Indices: 10863219--10863283 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
10863209 AAAATATAGT
10863219 AAAT-AAA-ATTTTTTAA-ATAATTTAATATAA
1 AAATAAAAGATTTTTTAATATAATTTAATATAA
10863249 AAATAAAAGATTTTTTAATATAATTTAATATAA
1 AAATAAAAGATTTTTTAATATAATTTAATATAA
10863282 AA
1 AA
10863284 TAATTATATT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
30 4 0.12
31 3 0.09
32 9 0.28
33 16 0.50
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (33 bp):
AAATAAAAGATTTTTTAATATAATTTAATATAA
Found at i:10863598 original size:16 final size:16
Alignment explanation
Indices: 10863577--10863627 Score: 84
Period size: 16 Copynumber: 3.2 Consensus size: 16
10863567 TGAATTACTG
10863577 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
10863593 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
*
10863609 ATTACAGCTCTATTTC
1 ATTACAGCTCTATTCC
10863625 ATT
1 ATT
10863628 CCACTGAACC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.27, C:0.27, G:0.04, T:0.41
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:10867357 original size:39 final size:38
Alignment explanation
Indices: 10867263--10867364 Score: 150
Period size: 38 Copynumber: 2.6 Consensus size: 38
10867253 ACCAAAATTT
*
10867263 TATTTTAAAAATAAAAAAATTAAAAAAAAGTACTTTAAAAA
1 TATTTT-AAAATTAAAAAA-T-AAAAAAAGTACTTTAAAAA
*
10867304 TATTTTAAAATTAAAAAATAAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATAAAAAAAGTACTTTAAAAA
10867342 TATTTTAAAATTTAAAAAATAAA
1 TATTTTAAAA-TTAAAAAATAAA
10867365 TATATTTATT
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
38 28 0.48
39 13 0.22
40 11 0.19
41 6 0.10
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (38 bp):
TATTTTAAAATTAAAAAATAAAAAAAGTACTTTAAAAA
Found at i:10867810 original size:143 final size:143
Alignment explanation
Indices: 10867543--10867966 Score: 670
Period size: 143 Copynumber: 3.0 Consensus size: 143
10867533 AGCACCTCTA
* *
10867543 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGACTTCAATCTGTTCCACTGCAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA
* * * * *
10867608 CTTCAGGAAAATAAGATCCGCCACAATTTGTAGCTTTAATTTGTTCCACTACAATGCTAAGGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAA
10867673 TAAGATTCAATGT
131 TAAGATTCAATGT
* *
10867686 CTTCAGTCTGCTCCACTGCAATTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA
*
10867751 CTTCAGGAAGATAAGATCCGTCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAA
***
10867816 TAAGATTTGCTGT
131 TAAGATTCAATGT
* * *
10867829 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGACTGGTGGCTTCAATCTACTCCACTACAA
1 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA
* *
10867894 CTTCAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCT-GGGAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACG-CTAAGGAA
10867958 ATAAGATTC
130 ATAAGATTC
10867967 GCTATGATGA
Statistics
Matches: 258, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
143 256 0.99
144 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (143 bp):
CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAA
CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCTAAGGAAA
TAAGATTCAATGT
Found at i:10868871 original size:20 final size:20
Alignment explanation
Indices: 10868849--10868886 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10868839 TGGCCTCTCT
10868849 TTTTCCTTT-TTTGTTTTTC
1 TTTTCCTTTCTTTGTTTTTC
*
10868868 TTTTCTTTTCTTTGTTTTT
1 TTTTCCTTTCTTTGTTTTT
10868887 TTTAAGTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (20 bp):
TTTTCCTTTCTTTGTTTTTC
Found at i:10871485 original size:19 final size:19
Alignment explanation
Indices: 10871463--10871502 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
10871453 TGTAAAATTT
*
10871463 AATGCATATG-ATGAAATGC
1 AATGCAGATGCATG-AATGC
10871482 AATGCAGATGCATGAATGC
1 AATGCAGATGCATGAATGC
10871501 AA
1 AA
10871503 AAAAAGGCGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 16 0.84
20 3 0.16
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (19 bp):
AATGCAGATGCATGAATGC
Found at i:10877138 original size:19 final size:20
Alignment explanation
Indices: 10877114--10877157 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
10877104 TATATAAATA
* *
10877114 ATATAATAAATATGTA-ATT
1 ATATAATAAAAATATATATT
10877133 ATATAATAAAAATATATATT
1 ATATAATAAAAATATATATT
10877153 ATATA
1 ATATA
10877158 TATCATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (20 bp):
ATATAATAAAAATATATATT
Found at i:10877554 original size:45 final size:45
Alignment explanation
Indices: 10877499--10877599 Score: 139
Period size: 45 Copynumber: 2.2 Consensus size: 45
10877489 TTTGTATGTG
* * * *
10877499 TATTTAAAATAATTATTTGAAATATTTAACATATAAACATAATGA
1 TATTTGAAATAATTAATTGAAATATTTAACATATAAAAATAATAA
* * *
10877544 TATTTGAAATAATTAATTGAAATTTTTCATATATAAAAATAATAA
1 TATTTGAAATAATTAATTGAAATATTTAACATATAAAAATAATAA
10877589 TATTTGAAATA
1 TATTTGAAATA
10877600 TTTTACATAT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (45 bp):
TATTTGAAATAATTAATTGAAATATTTAACATATAAAAATAATAA
Found at i:10877610 original size:32 final size:32
Alignment explanation
Indices: 10877551--10877621 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
10877541 TGATATTTGA
*
10877551 AATAATTAATTGAAATTTTTCATATATAAAAAT
1 AATAA-TAATTGAAATTTTTCACATATAAAAAT
*
10877584 AATAATATTTGAAATATTTT-ACATATAAAAAT
1 AATAATAATTGAAAT-TTTTCACATATAAAAAT
10877616 AATAAT
1 AATAAT
10877622 GATGTTTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
32 26 0.74
33 9 0.26
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (32 bp):
AATAATAATTGAAATTTTTCACATATAAAAAT
Found at i:10877982 original size:15 final size:16
Alignment explanation
Indices: 10877944--10877974 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10877934 AATTAAAAAG
*
10877944 ATAAATTAAAAATAAA
1 ATAATTTAAAAATAAA
10877960 ATAATTTAAAAATAA
1 ATAATTTAAAAATAA
10877975 CATGTTTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
ATAATTTAAAAATAAA
Found at i:10886188 original size:25 final size:25
Alignment explanation
Indices: 10886111--10886190 Score: 115
Period size: 25 Copynumber: 3.2 Consensus size: 25
10886101 GACACACCAT
*
10886111 AGCTCTTATGAGCTTACCGATTCTC
1 AGCTCATATGAGCTTACCGATTCTC
* * *
10886136 AACTCGTATAAGCTTACCGATTCTC
1 AGCTCATATGAGCTTACCGATTCTC
*
10886161 AGCTCATATGAGCTTACCGATTCAC
1 AGCTCATATGAGCTTACCGATTCTC
10886186 AGCTC
1 AGCTC
10886191 GCAAAAGCAT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (25 bp):
AGCTCATATGAGCTTACCGATTCTC
Found at i:10886223 original size:50 final size:50
Alignment explanation
Indices: 10886111--10886208 Score: 133
Period size: 50 Copynumber: 2.0 Consensus size: 50
10886101 GACACACCAT
* * * * *
10886111 AGCTCTTATGAGCTTACCGATTCTCAACTCGTATAAGCTTACCGATTCTC
1 AGCTCATATGAGCTTACCGATTCACAACTCGCAAAAGCATACCGATTCTC
* *
10886161 AGCTCATATGAGCTTACCGATTCACAGCTCGCAAAAGCATACTGATTC
1 AGCTCATATGAGCTTACCGATTCACAACTCGCAAAAGCATACCGATTC
10886209 ATAGTTTGTA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (50 bp):
AGCTCATATGAGCTTACCGATTCACAACTCGCAAAAGCATACCGATTCTC
Found at i:10890279 original size:40 final size:39
Alignment explanation
Indices: 10890214--10890391 Score: 151
Period size: 40 Copynumber: 4.4 Consensus size: 39
10890204 ACTATGTTTA
* ** *
10890214 GCACTTAGTGTACGATCCGAGATAGCTTCGGCTATTTATG
1 GCACTTAGTGTGCGATTAGA-ATAGCTTCGGCTATATATG
*
10890254 GCACTTAGTGTGCGATTAGGAATAGCTTCGGCCATATATG
1 GCACTTAGTGTGCGATTA-GAATAGCTTCGGCTATATATG
* * * * *
10890294 GCACTTACTGTGCGA-AACTGAGATAGCTTTGGCTATGTAAG
1 GCACTTAGTGTGCGATTA--GA-ATAGCTTCGGCTATATATG
* **
10890335 GCACTTAGTGTGCGGGATTATAATAGCTTCGGCTATGCGATG
1 GCACTTAGTGTGC--GATTAGAATAGCTTCGGCTAT-ATATG
*
10890377 GCATTTAGTGTGCGA
1 GCACTTAGTGTGCGA
10890392 AACATTGAGT
Statistics
Matches: 111, Mismatches: 20, Indels: 14
0.77 0.14 0.10
Matches are distributed among these distances:
39 1 0.01
40 50 0.45
41 42 0.38
42 15 0.14
43 2 0.02
44 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (39 bp):
GCACTTAGTGTGCGATTAGAATAGCTTCGGCTATATATG
Found at i:10896547 original size:25 final size:25
Alignment explanation
Indices: 10896488--10896548 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
10896478 CTCCTAAATT
*
10896488 TTAATTTAATTATCTAATTTTTCAA
1 TTAATTAAATTATCTAATTTTTCAA
* *
10896513 TTTATAAAATTAT-TAATATTTT-ATA
1 TTAATTAAATTATCTAAT-TTTTCA-A
10896538 TTAATTAAATT
1 TTAATTAAATT
10896549 TTTGAGAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
24 5 0.17
25 24 0.83
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (25 bp):
TTAATTAAATTATCTAATTTTTCAA
Found at i:10902565 original size:26 final size:27
Alignment explanation
Indices: 10902536--10902587 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
10902526 GTTATATATT
*
10902536 AAATAT-ATATTT-TTTTATTTTTAATC
1 AAATATAAT-TTTGTTTTATTATTAATC
10902562 AAATATAATTTTGTTTTATTATTAAT
1 AAATATAATTTTGTTTTATTATTAAT
10902588 TTGGCTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (27 bp):
AAATATAATTTTGTTTTATTATTAATC
Found at i:10919382 original size:15 final size:15
Alignment explanation
Indices: 10919351--10919405 Score: 53
Period size: 15 Copynumber: 3.8 Consensus size: 15
10919341 AGTTTTGTTC
10919351 ATAT-TATT-TTTTAA
1 ATATATATTATTTT-A
10919365 ATATATATTATTTTA
1 ATATATATTATTTTA
* * *
10919380 ATATTTAATAATTTA
1 ATATATATTATTTTA
10919395 ATATAT-TTATT
1 ATATATATTATT
10919406 ATTTATTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
14 7 0.21
15 22 0.67
16 4 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
ATATATATTATTTTA
Found at i:10919899 original size:19 final size:19
Alignment explanation
Indices: 10919877--10919938 Score: 58
Period size: 16 Copynumber: 3.2 Consensus size: 19
10919867 CACTTTTTTA
10919877 TGTTATAATAACTTTCATT
1 TGTTATAATAACTTTCATT
*
10919896 TGTTTATTTTAATAAATTT-A--
1 TG-TTA---TAATAACTTTCATT
10919916 TGTTATAATAACTTTCATT
1 TGTTATAATAACTTTCATT
10919935 TGTT
1 TGTT
10919939 TATTTTAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 14
0.68 0.04 0.28
Matches are distributed among these distances:
16 9 0.26
17 1 0.03
19 9 0.26
20 5 0.15
22 1 0.03
23 9 0.26
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.56
Consensus pattern (19 bp):
TGTTATAATAACTTTCATT
Found at i:10919927 original size:39 final size:39
Alignment explanation
Indices: 10919873--10919955 Score: 166
Period size: 39 Copynumber: 2.1 Consensus size: 39
10919863 TACTCACTTT
10919873 TTTATGTTATAATAACTTTCATTTGTTTATTTTAATAAA
1 TTTATGTTATAATAACTTTCATTTGTTTATTTTAATAAA
10919912 TTTATGTTATAATAACTTTCATTTGTTTATTTTAATAAA
1 TTTATGTTATAATAACTTTCATTTGTTTATTTTAATAAA
10919951 TTTAT
1 TTTAT
10919956 CAATTAAGAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.58
Consensus pattern (39 bp):
TTTATGTTATAATAACTTTCATTTGTTTATTTTAATAAA
Found at i:10921397 original size:18 final size:18
Alignment explanation
Indices: 10921353--10921400 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
10921343 GCAATAAAAA
10921353 AATGTTTTGAAATTGAAT
1 AATGTTTTGAAATTGAAT
* *
10921371 AACGATTTGTAAA-TGAAT
1 AATGTTTTG-AAATTGAAT
10921389 AATGTTTTGAAA
1 AATGTTTTGAAA
10921401 ACGAACGACA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 3 0.12
18 19 0.76
19 3 0.12
ACGTcount: A:0.42, C:0.02, G:0.17, T:0.40
Consensus pattern (18 bp):
AATGTTTTGAAATTGAAT
Found at i:10922685 original size:20 final size:20
Alignment explanation
Indices: 10922660--10922704 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
10922650 TGGTAACAAA
10922660 TATTATGTAATAGATATATT
1 TATTATGTAATAGATATATT
10922680 TATTATGTAATAGATATATT
1 TATTATGTAATAGATATATT
10922700 TATTA
1 TATTA
10922705 AAAATTCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (20 bp):
TATTATGTAATAGATATATT
Found at i:10925130 original size:34 final size:33
Alignment explanation
Indices: 10925088--10925154 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 33
10925078 ATTTGGGTTG
* *
10925088 GTTTGGGTTTGAAA-CTGATTCGAGAATCGATTA
1 GTTTGGGTTAGAAATC-GATTCAAGAATCGATTA
*
10925121 GTTTAGGGTTAGAAATCGATTCAATAATCGATTA
1 GTTT-GGGTTAGAAATCGATTCAAGAATCGATTA
10925155 ACAAGGTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 4 0.14
34 24 0.83
35 1 0.03
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.36
Consensus pattern (33 bp):
GTTTGGGTTAGAAATCGATTCAAGAATCGATTA
Found at i:10925368 original size:6 final size:6
Alignment explanation
Indices: 10925353--10925506 Score: 115
Period size: 6 Copynumber: 25.7 Consensus size: 6
10925343 ATTTTGGGTT
* * *
10925353 ATTTCA ATTTCG ATTTCA ATTTTG ATTTCG ATTAT-G ATTAT-G ATTTCG
1 ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATT-TCG ATT-TCG ATTTCG
* *
10925401 ATTTCG ATTTCG ATTTTG ATTTCG ATTTTG ATTTCG A-TTCTG A-TTCTG
1 ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTC-G ATTTC-G
* * *
10925449 A-TTCTG A-TTCTG A-TTCTG ATTTAG ATTTAG ATTTTG ATTTCG ATTTCG
1 ATTTC-G ATTTC-G ATTTC-G ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG
*
10925497 ATTTTG ATTT
1 ATTTCG ATTT
10925507 TAATTTAGGG
Statistics
Matches: 131, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
5 4 0.03
6 124 0.95
7 3 0.02
ACGTcount: A:0.21, C:0.10, G:0.15, T:0.54
Consensus pattern (6 bp):
ATTTCG
Found at i:10925507 original size:6 final size:6
Alignment explanation
Indices: 10925371--10925512 Score: 122
Period size: 6 Copynumber: 23.7 Consensus size: 6
10925361 TTCGATTTCA
* * * * * *
10925371 ATTTTG ATTTCG ATTATG ATTATG ATTTCG ATTTCG ATTTCG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
* * * * * * *
10925419 ATTTCG ATTTTG ATTTCG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
* * * * *
10925467 ATTTAG ATTTAG ATTTTG ATTTCG ATTTCG ATTTTG ATTTTA ATTT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTT
10925513 AGGGTTATTT
Statistics
Matches: 119, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 119 1.00
ACGTcount: A:0.20, C:0.09, G:0.15, T:0.55
Consensus pattern (6 bp):
ATTTTG
Found at i:10925512 original size:18 final size:18
Alignment explanation
Indices: 10925359--10925506 Score: 160
Period size: 18 Copynumber: 8.2 Consensus size: 18
10925349 GGTTATTTCA
*
10925359 ATTTCGATTTCAATTTTG
1 ATTTCGATTTCGATTTTG
*
10925377 ATTTCGATTAT-GATTATG
1 ATTTCGATT-TCGATTTTG
*
10925395 ATTTCGATTTCGATTTCG
1 ATTTCGATTTCGATTTTG
*
10925413 ATTTTGATTTCGATTTTG
1 ATTTCGATTTCGATTTTG
*
10925431 ATTTCGA-TTCTGATTCTG
1 ATTTCGATTTC-GATTTTG
*
10925449 A-TTCTGA-TTCTGATTCTG
1 ATTTC-GATTTC-GATTTTG
* *
10925467 ATTTAGATTTAGATTTTG
1 ATTTCGATTTCGATTTTG
10925485 ATTTCGATTTCGATTTTG
1 ATTTCGATTTCGATTTTG
10925503 ATTT
1 ATTT
10925507 TAATTTAGGG
Statistics
Matches: 111, Mismatches: 13, Indels: 12
0.82 0.10 0.09
Matches are distributed among these distances:
17 7 0.06
18 99 0.89
19 5 0.05
ACGTcount: A:0.20, C:0.10, G:0.16, T:0.54
Consensus pattern (18 bp):
ATTTCGATTTCGATTTTG
Found at i:10925882 original size:62 final size:62
Alignment explanation
Indices: 10925785--10925983 Score: 364
Period size: 62 Copynumber: 3.2 Consensus size: 62
10925775 GTTAAAATAT
* *
10925785 TTGGTTATTGCCTGCCACGTGCATGACAAAAATGGTTGTGTTTGTATTAAATTATTTTTGTA
1 TTGGTTATTGTCTGCCATGTGCATGACAAAAATGGTTGTGTTTGTATTAAATTATTTTTGTA
10925847 TTGGTTATTGTCTGCCATGTGCATGACAAAAATGGTTGTGTTTGTATTAAATTATTTTTGTA
1 TTGGTTATTGTCTGCCATGTGCATGACAAAAATGGTTGTGTTTGTATTAAATTATTTTTGTA
10925909 TTGGTTATTGTCTGCCATGTGCATGACAAAAATGGTTGTGTTTGTATTAAATTA-TTTTGTA
1 TTGGTTATTGTCTGCCATGTGCATGACAAAAATGGTTGTGTTTGTATTAAATTATTTTTGTA
*
10925970 TTTGTTATTGTCTG
1 TTGGTTATTGTCTG
10925984 ATAGAAATGG
Statistics
Matches: 134, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
61 20 0.15
62 114 0.85
ACGTcount: A:0.23, C:0.09, G:0.21, T:0.47
Consensus pattern (62 bp):
TTGGTTATTGTCTGCCATGTGCATGACAAAAATGGTTGTGTTTGTATTAAATTATTTTTGTA
Found at i:10927942 original size:95 final size:95
Alignment explanation
Indices: 10927789--10928090 Score: 496
Period size: 95 Copynumber: 3.2 Consensus size: 95
10927779 GAATGTTTTT
* *
10927789 TAATATGCATGCAATGATTGTTGGTGTGTATGACTATTTTTTAATATACATGTTGTTGACTATTT
1 TAATATGCATGCAGTGATTGTTGGTGTGTATGACTATTTTTTAATATACATGCTGTTGACTATTT
10927854 TTTAATATGCATGCAGTGAGTATTTTTTAA
66 TTTAATATGCATGCAGTGAGTATTTTTTAA
*
10927884 TAATATGCATGCAGTGATTGTTGGTGTGTATGACTATTTTTTAATATACATGCAGTTGACTATTT
1 TAATATGCATGCAGTGATTGTTGGTGTGTATGACTATTTTTTAATATACATGCTGTTGACTATTT
10927949 TTTAATATGCATGCAGTGAGTATTTTTTAA
66 TTTAATATGCATGCAGTGAGTATTTTTTAA
* * * * * *
10927979 CAATATGCATGCAGTGATTGTCGGTGTGTATGATTGTTTTTTAATATACATACTTTTGACTATTT
1 TAATATGCATGCAGTGATTGTTGGTGTGTATGACTATTTTTTAATATACATGCTGTTGACTATTT
* *
10928044 TTTAATATGAATGCAATGAGTATTTTTTAA
66 TTTAATATGCATGCAGTGAGTATTTTTTAA
*
10928074 TAATATGCATGTAGTGA
1 TAATATGCATGCAGTGA
10928091 CTGCTTTTTA
Statistics
Matches: 193, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
95 193 1.00
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.46
Consensus pattern (95 bp):
TAATATGCATGCAGTGATTGTTGGTGTGTATGACTATTTTTTAATATACATGCTGTTGACTATTT
TTTAATATGCATGCAGTGAGTATTTTTTAA
Found at i:10927950 original size:26 final size:25
Alignment explanation
Indices: 10927914--10927978 Score: 103
Period size: 26 Copynumber: 2.6 Consensus size: 25
10927904 TTGGTGTGTA
10927914 TGACTATTTTTTAATATACATGCAG
1 TGACTATTTTTTAATATACATGCAG
*
10927939 TTGACTATTTTTTAATATGCATGCAG
1 -TGACTATTTTTTAATATACATGCAG
*
10927965 TGAGTATTTTTTAA
1 TGACTATTTTTTAA
10927979 CAATATGCAT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
25 13 0.35
26 24 0.65
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.48
Consensus pattern (25 bp):
TGACTATTTTTTAATATACATGCAG
Found at i:10927995 original size:28 final size:25
Alignment explanation
Indices: 10927819--10927900 Score: 92
Period size: 26 Copynumber: 3.1 Consensus size: 25
10927809 TTGGTGTGTA
* **
10927819 TGACTATTTTTTAATATACATGTTG
1 TGACTATTTTTTAATATGCATGCAG
10927844 TTGACTATTTTTTAATATGCATGCAG
1 -TGACTATTTTTTAATATGCATGCAG
*
10927870 TGAGTATTTTTTAATAATATGCATGCAG
1 TGACTA-TTTTT--TAATATGCATGCAG
10927898 TGA
1 TGA
10927901 TTGTTGGTGT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.10
26 27 0.55
28 17 0.35
ACGTcount: A:0.29, C:0.09, G:0.16, T:0.46
Consensus pattern (25 bp):
TGACTATTTTTTAATATGCATGCAG
Found at i:10928830 original size:18 final size:18
Alignment explanation
Indices: 10928774--10928833 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
10928764 CCCAAATTAG
*
10928774 CAACAGGCTACCCCAAAT
1 CAACAGGCTACCCCAACT
* * *
10928792 CAGCAAGAGAGTACCCTAACT
1 CAAC-AG-G-CTACCCCAACT
10928813 CAACAGGCTACCCCAACT
1 CAACAGGCTACCCCAACT
10928831 CAA
1 CAA
10928834 TTACAAACTG
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
18 15 0.47
19 3 0.09
20 3 0.09
21 11 0.34
ACGTcount: A:0.38, C:0.37, G:0.13, T:0.12
Consensus pattern (18 bp):
CAACAGGCTACCCCAACT
Found at i:10928849 original size:21 final size:22
Alignment explanation
Indices: 10928823--10928874 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 22
10928813 CAACAGGCTA
*
10928823 CCCCAACTCAAT-TACAAACTG
1 CCCCAACTCAATCAACAAACTG
*
10928844 CCCCAACTC-ATCAACAAGCTG
1 CCCCAACTCAATCAACAAACTG
10928865 CCCCAACTCA
1 CCCCAACTCA
10928875 CCAAAAAGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 25 0.93
ACGTcount: A:0.35, C:0.44, G:0.06, T:0.15
Consensus pattern (22 bp):
CCCCAACTCAATCAACAAACTG
Found at i:10928894 original size:24 final size:21
Alignment explanation
Indices: 10928841--10928882 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
10928831 CAATTACAAA
* *
10928841 CTGCCCCAACTCATCAACAAG
1 CTGCCCCAACTCACCAAAAAG
10928862 CTGCCCCAACTCACCAAAAAG
1 CTGCCCCAACTCACCAAAAAG
10928883 ATGCTGCCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.43, G:0.10, T:0.12
Consensus pattern (21 bp):
CTGCCCCAACTCACCAAAAAG
Found at i:10929317 original size:23 final size:24
Alignment explanation
Indices: 10929286--10929331 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
10929276 TTCTAACATA
*
10929286 TGAGTATTGA-AAAAACAAATGTG
1 TGAGAATTGAGAAAAACAAATGTG
*
10929309 TGAGAATTGAGAAATACAAATGT
1 TGAGAATTGAGAAAAACAAATGT
10929332 TTCTTTTATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.48, C:0.04, G:0.22, T:0.26
Consensus pattern (24 bp):
TGAGAATTGAGAAAAACAAATGTG
Found at i:10929615 original size:36 final size:36
Alignment explanation
Indices: 10929568--10929646 Score: 149
Period size: 36 Copynumber: 2.2 Consensus size: 36
10929558 GTTAGCCATG
*
10929568 TATACCAGTAGCCATGTATAACAACATAAGCAACAA
1 TATACCAGTAGCCATATATAACAACATAAGCAACAA
10929604 TATACCAGTAGCCATATATAACAACATAAGCAACAA
1 TATACCAGTAGCCATATATAACAACATAAGCAACAA
10929640 TATACCA
1 TATACCA
10929647 ACAACAATAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.48, C:0.23, G:0.09, T:0.20
Consensus pattern (36 bp):
TATACCAGTAGCCATATATAACAACATAAGCAACAA
Found at i:10929648 original size:20 final size:20
Alignment explanation
Indices: 10929584--10929649 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
10929574 AGTAGCCATG
10929584 TATAACAACATAAGCAACAA
1 TATAACAACATAAGCAACAA
10929604 TAT-AC--CAGT-AGC--CATA
1 TATAACAACA-TAAGCAACA-A
10929620 TATAACAACATAAGCAACAA
1 TATAACAACATAAGCAACAA
*
10929640 TATACCAACA
1 TATAACAACA
10929650 ACAATATTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 16
0.69 0.02 0.30
Matches are distributed among these distances:
15 2 0.05
16 4 0.11
17 7 0.19
18 2 0.05
19 7 0.19
20 13 0.35
21 2 0.05
ACGTcount: A:0.53, C:0.23, G:0.06, T:0.18
Consensus pattern (20 bp):
TATAACAACATAAGCAACAA
Found at i:10929666 original size:36 final size:36
Alignment explanation
Indices: 10929584--10929670 Score: 122
Period size: 36 Copynumber: 2.4 Consensus size: 36
10929574 AGTAGCCATG
** * *
10929584 TATAACAACATAAGCAACAATATACCAGTAGCCATA
1 TATAACAACATAAGCAACAATATACCAACAACAATA
10929620 TATAACAACATAAGCAACAATATACCAACAACAATA
1 TATAACAACATAAGCAACAATATACCAACAACAATA
10929656 TTATAA-AACATAAGC
1 -TATAACAACATAAGC
10929671 TGGTTTTCAA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 41 0.89
37 5 0.11
ACGTcount: A:0.54, C:0.21, G:0.06, T:0.20
Consensus pattern (36 bp):
TATAACAACATAAGCAACAATATACCAACAACAATA
Found at i:10930484 original size:6 final size:6
Alignment explanation
Indices: 10930473--10930509 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
10930463 TGCTTCATTT
10930473 CCACCG CCACCG CCACCG CCACCG CCACCG CCACCG C
1 CCACCG CCACCG CCACCG CCACCG CCACCG CCACCG C
10930510 TGAGAACCGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.16, C:0.68, G:0.16, T:0.00
Consensus pattern (6 bp):
CCACCG
Found at i:10936878 original size:39 final size:39
Alignment explanation
Indices: 10936824--10936903 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
10936814 AAATTAAACG
* * *
10936824 GTAAAAGAGAATAGGAATGAGAGCTTTCGATTGGTGCAA
1 GTAAAAAAGAATAGGAATGAGAGCTTTCAATTGGTACAA
10936863 GTAAAAAAGAATAGGAATGAGAGCTTTCAATTGGTACAA
1 GTAAAAAAGAATAGGAATGAGAGCTTTCAATTGGTACAA
10936902 GT
1 GT
10936904 GATGCGAACA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.41, C:0.07, G:0.28, T:0.24
Consensus pattern (39 bp):
GTAAAAAAGAATAGGAATGAGAGCTTTCAATTGGTACAA
Found at i:10938359 original size:20 final size:21
Alignment explanation
Indices: 10938331--10938374 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
10938321 AAAAGGAAAA
* *
10938331 CTTATAAAAATAT-ATTTTTT
1 CTTAAAAAAATATGATTATTT
*
10938351 CTTAAAAAATTATGATTATTT
1 CTTAAAAAAATATGATTATTT
10938372 CTT
1 CTT
10938375 TTTATTTTAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (21 bp):
CTTAAAAAAATATGATTATTT
Found at i:10938374 original size:21 final size:20
Alignment explanation
Indices: 10938331--10938374 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
10938321 AAAAGGAAAA
*
10938331 CTTATAAAAATATATTTTTT
1 CTTATAAAAATATATTATTT
10938351 CTTA-AAAAATTATGATTATTT
1 CTTATAAAAA-TAT-ATTATTT
10938372 CTT
1 CTT
10938375 TTTATTTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 5 0.24
20 7 0.33
21 9 0.43
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (20 bp):
CTTATAAAAATATATTATTT
Found at i:10941021 original size:23 final size:23
Alignment explanation
Indices: 10940963--10941041 Score: 88
Period size: 23 Copynumber: 3.5 Consensus size: 23
10940953 CGCGTGCTCG
* *
10940963 TGAATTTAGCACTCTGGTGTTCT
1 TGAATTTAGCACTTTGGTGTTCC
** * *
10940986 TGAAACTAACACTTTGGGGTTCC
1 TGAATTTAGCACTTTGGTGTTCC
*
10941009 TGAATTTAGCACTTTGGTGCTCC
1 TGAATTTAGCACTTTGGTGTTCC
10941032 T-AATTTAGCA
1 TGAATTTAGCA
10941042 TTTATGTGAT
Statistics
Matches: 45, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
22 9 0.20
23 36 0.80
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (23 bp):
TGAATTTAGCACTTTGGTGTTCC
Found at i:10941054 original size:22 final size:22
Alignment explanation
Indices: 10940995--10941060 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 22
10940985 TTGAAACTAA
* *
10940995 CACTTTGGGGTTCCTGAATTTAG
1 CACTTTGGTGATCCT-AATTTAG
*
10941018 CACTTTGGTGCTCCTAATTTAG
1 CACTTTGGTGATCCTAATTTAG
*
10941040 CA-TTTATGTGATCCTATATTT
1 CACTTT-GGTGATCCTA-ATTT
10941061 GTGAATTCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.08
22 17 0.46
23 17 0.46
ACGTcount: A:0.20, C:0.18, G:0.18, T:0.44
Consensus pattern (22 bp):
CACTTTGGTGATCCTAATTTAG
Found at i:10944715 original size:23 final size:23
Alignment explanation
Indices: 10944684--10944756 Score: 75
Period size: 24 Copynumber: 3.3 Consensus size: 23
10944674 GTTGTTTCAA
10944684 TTATCTTTAGATTCTTGTCACTAT
1 TTAT-TTTAGATTCTTGTCACTAT
*
10944708 TTATTTTA-ATTGTT-TCA--A-
1 TTATTTTAGATTCTTGTCACTAT
10944726 TTATTTTCAGATTCTTGTCACTAT
1 TTATTTT-AGATTCTTGTCACTAT
*
10944750 GTATTTT
1 TTATTTT
10944757 GGAATTAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
18 7 0.17
19 2 0.05
20 5 0.12
21 6 0.15
22 5 0.12
23 5 0.12
24 10 0.25
ACGTcount: A:0.22, C:0.12, G:0.08, T:0.58
Consensus pattern (23 bp):
TTATTTTAGATTCTTGTCACTAT
Found at i:10944738 original size:42 final size:42
Alignment explanation
Indices: 10944675--10944756 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
10944665 GCTTGCTTAG
*
10944675 TTGTTTCAATTATCTTTAGATTCTTGTCACTATTTATTTTAA
1 TTGTTTCAATTATCTTTAGATTCTTGTCACTATGTATTTTAA
10944717 TTGTTTCAATTAT-TTTCAGATTCTTGTCACTATGTATTTT
1 TTGTTTCAATTATCTTT-AGATTCTTGTCACTATGTATTTT
10944757 GGAATTAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
41 3 0.08
42 35 0.92
ACGTcount: A:0.22, C:0.12, G:0.09, T:0.57
Consensus pattern (42 bp):
TTGTTTCAATTATCTTTAGATTCTTGTCACTATGTATTTTAA
Found at i:10945480 original size:9 final size:9
Alignment explanation
Indices: 10945466--10945502 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
10945456 TATAGTTTGA
10945466 TATTCGAAT
1 TATTCGAAT
10945475 TATTCGAAT
1 TATTCGAAT
**
10945484 TATTCGAGC
1 TATTCGAAT
10945493 TATTCGAAT
1 TATTCGAAT
10945502 T
1 T
10945503 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.43
Consensus pattern (9 bp):
TATTCGAAT
Found at i:10946191 original size:40 final size:39
Alignment explanation
Indices: 10946141--10946258 Score: 147
Period size: 40 Copynumber: 3.1 Consensus size: 39
10946131 GAATATATCT
10946141 TGGTTATATGACTAGATTATATGGAAATAGATATATGAAA
1 TGGTTATATGA-TAGATTATATGGAAATAGATATATGAAA
*
10946181 TGGTTATATGAATCA-ATTATATGGAAATAGATATATGATA
1 TGGTTATATG-AT-AGATTATATGGAAATAGATATATGAAA
* *
10946221 TGGTTATATG---G-TCATATAGAAATAGATATATGAAA
1 TGGTTATATGATAGATTATATGGAAATAGATATATGAAA
10946256 TGG
1 TGG
10946259 AATATTAGAT
Statistics
Matches: 71, Mismatches: 4, Indels: 11
0.83 0.05 0.13
Matches are distributed among these distances:
35 24 0.34
40 45 0.63
41 2 0.03
ACGTcount: A:0.42, C:0.03, G:0.20, T:0.36
Consensus pattern (39 bp):
TGGTTATATGATAGATTATATGGAAATAGATATATGAAA
Found at i:10946868 original size:49 final size:50
Alignment explanation
Indices: 10946813--10946913 Score: 177
Period size: 49 Copynumber: 2.0 Consensus size: 50
10946803 TTTTGCTACC
* *
10946813 TAAATGCAATTTTGGTGTAATGACCTGATAGTCACAGGTATC-GAAAATG
1 TAAATGCAATTTTGGTGTAACGACCTGATAGTCACAGGTATCAAAAAATG
10946862 TAAATGCAATTTTGGTGTAACGACCTGATAGTCACAGGTATCAAAAAATG
1 TAAATGCAATTTTGGTGTAACGACCTGATAGTCACAGGTATCAAAAAATG
10946912 TA
1 TA
10946914 TTTTCGAGAT
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
49 41 0.84
50 8 0.16
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.30
Consensus pattern (50 bp):
TAAATGCAATTTTGGTGTAACGACCTGATAGTCACAGGTATCAAAAAATG
Found at i:10947310 original size:25 final size:25
Alignment explanation
Indices: 10947253--10947327 Score: 78
Period size: 25 Copynumber: 2.9 Consensus size: 25
10947243 ATAGAAATAG
* *
10947253 AAAAAGAAGGAGAGAAAGAAACGAA
1 AAAAAGAAGGAAAGAAAGAAAAGAA
* * *
10947278 ACAGAGAAGGAAATAAAGAAAAGAA
1 AAAAAGAAGGAAAGAAAGAAAAGAA
*
10947303 AAAAAGAAAGAAAGAAGGAGAAAAG
1 AAAAAGAAGGAAAGAA--AGAAAAG
10947328 TTAGGGTTTC
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
25 32 0.82
27 7 0.18
ACGTcount: A:0.69, C:0.03, G:0.27, T:0.01
Consensus pattern (25 bp):
AAAAAGAAGGAAAGAAAGAAAAGAA
Found at i:10948007 original size:24 final size:24
Alignment explanation
Indices: 10947980--10948025 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
10947970 ATTGAAATGG
10947980 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
10948004 ATTGAATTTATATTGATTGAAT
1 ATTGAATTTATATTGATTGAAT
10948026 AGGTATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 3 0.15
24 12 0.60
25 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:10948245 original size:40 final size:40
Alignment explanation
Indices: 10948182--10948316 Score: 140
Period size: 40 Copynumber: 3.5 Consensus size: 40
10948172 CGACTTCGAG
*
10948182 TCGATGAGACACTGGGTGTCAATTTATTACTTCGGATTAA
1 TCGATGAGACACTGGGTGTCAATTTATTACTTCAGATTAA
* * *
10948222 TTCGATGAGGCA-TGGGTGCCAA--T-TTACTTCAGTTTAA
1 -TCGATGAGACACTGGGTGTCAATTTATTACTTCAGATTAA
*
10948259 CCGATGAGACACTGGGTGTCAATTTATTACTTCA-AGTT-A
1 TCGATGAGACACTGGGTGTCAATTTATTACTTCAGA-TTAA
10948298 TCCGATGATG-CACTGGGTG
1 T-CGATGA-GACACTGGGTG
10948317 CCAAACTGGT
Statistics
Matches: 78, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
36 9 0.12
37 21 0.27
38 1 0.01
39 2 0.03
40 34 0.44
41 11 0.14
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (40 bp):
TCGATGAGACACTGGGTGTCAATTTATTACTTCAGATTAA
Found at i:10948485 original size:20 final size:20
Alignment explanation
Indices: 10948460--10948499 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
10948450 TTGAATATTG
10948460 TATGGATAAAGC-AATTGCAT
1 TATGGAT-AAGCTAATTGCAT
10948480 TATGGATAAGCTAATTGCAT
1 TATGGATAAGCTAATTGCAT
10948500 AAACGAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.33
Consensus pattern (20 bp):
TATGGATAAGCTAATTGCAT
Found at i:10949003 original size:13 final size:13
Alignment explanation
Indices: 10948985--10949012 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
10948975 TGAATGATAT
10948985 TTTGATGATATAA
1 TTTGATGATATAA
10948998 TTTGATGATATAA
1 TTTGATGATATAA
10949011 TT
1 TT
10949013 GTGGTACCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (13 bp):
TTTGATGATATAA
Found at i:10953715 original size:218 final size:216
Alignment explanation
Indices: 10953312--10953715 Score: 531
Period size: 218 Copynumber: 1.9 Consensus size: 216
10953302 ATTTTTACTG
* *
10953312 GTTAGGATTCATGAATTTATATTCATTTATGTTGGTGTTACACAATTTTAAGTTTGCAAATACAA
1 GTTAGGATTCATGAATTTATATTCATCTATGTTGGTGTTACACAATTTGAAGTTTGCAAATACAA
* ** ** * * *
10953377 TAATATTTATTGACCTATCGTTTTCATCAATGTATTCTATTGGTCACAATTTAACTAATAGAACA
66 TAATATTCATCAACCTATCGTTTGAATCAATGTATTCTATCGGTCAAAATTTAACGAATAGAACA
** * * * * * * **
10953442 ATTGCATTATAATTTTTATCTTTTGAATTGTTCTTATAGCGTAATTATGTTAAGTACGTCGACGA
131 ACAGCATTACAAGTTTTATCTTTT-AATTATTCTAATACCATAATTACATTAAGTACGTCGACGA
10953507 TAACGTTTTGCATAATGCAACT
195 TAACGTTTTGCATAATGCAACT
*
10953529 GTTAGGATTCATGAATTTATATTCATCTATGTTGGTGTTACACAATTTGAAGTTTTGCAAATACT
1 GTTAGGATTCATGAATTTATATTCATCTATGTTGGTGTTACACAATTTGAAG-TTTGCAAATACA
*
10953594 ATAATATTCATCAACCTATCGTTTGAATCAATGTATTCTATCGGTCAAAATTTAACGAATAGAAT
65 ATAATATTCATCAACCTATCGTTTGAATCAATGTATTCTATCGGTCAAAATTTAACGAATAGAAC
* * * *
10953659 AGCAGCATTACGAGTTTTATCTCCTTT-ATTATTGTAATTCCATAATTACATTAAGTA
130 AACAGCATTACAAGTTTTATCT--TTTAATTATTCTAATACCATAATTACATTAAGTA
10953716 TTTTGGTGAT
Statistics
Matches: 158, Mismatches: 26, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
217 50 0.32
218 105 0.66
220 3 0.02
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (216 bp):
GTTAGGATTCATGAATTTATATTCATCTATGTTGGTGTTACACAATTTGAAGTTTGCAAATACAA
TAATATTCATCAACCTATCGTTTGAATCAATGTATTCTATCGGTCAAAATTTAACGAATAGAACA
ACAGCATTACAAGTTTTATCTTTTAATTATTCTAATACCATAATTACATTAAGTACGTCGACGAT
AACGTTTTGCATAATGCAACT
Found at i:10954334 original size:37 final size:37
Alignment explanation
Indices: 10954293--10954369 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
10954283 AGCTCCTTAC
* * *
10954293 TTTCTTCCCGATT-CATTCAACGCTTCAAGTTTCCTAT
1 TTTCTTCCCGATTCCATT-AACACTTCAAGCTTCCAAT
*
10954330 TTTCTTCTCGATTCCATTAACACTTCAAGCTTCCAAT
1 TTTCTTCCCGATTCCATTAACACTTCAAGCTTCCAAT
10954367 TTT
1 TTT
10954370 ATTCTTAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 31 0.89
38 4 0.11
ACGTcount: A:0.21, C:0.29, G:0.06, T:0.44
Consensus pattern (37 bp):
TTTCTTCCCGATTCCATTAACACTTCAAGCTTCCAAT
Found at i:10954381 original size:37 final size:38
Alignment explanation
Indices: 10954306--10954394 Score: 101
Period size: 37 Copynumber: 2.4 Consensus size: 38
10954296 CTTCCCGATT
* * * * *
10954306 CATTCAACGCTTCAAGTTTCCTATTTTCTTCTCGATTC
1 CATTCAACACTTCAAGCTTCCAATTTTATTCTCAATTC
*
10954344 CATT-AACACTTCAAGCTTCCAATTTTATTCTTAATTC
1 CATTCAACACTTCAAGCTTCCAATTTTATTCTCAATTC
*
10954381 C-TTCAACTCTTCAA
1 CATTCAACACTTCAA
10954395 TCTCTAAATT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
36 2 0.05
37 37 0.86
38 4 0.09
ACGTcount: A:0.25, C:0.28, G:0.04, T:0.43
Consensus pattern (38 bp):
CATTCAACACTTCAAGCTTCCAATTTTATTCTCAATTC
Found at i:10956542 original size:37 final size:37
Alignment explanation
Indices: 10956491--10956744 Score: 172
Period size: 37 Copynumber: 6.9 Consensus size: 37
10956481 ATCGTATGCC
*
10956491 TTCCTTCAACCCTTCAAGCTCCTTACGTTCTTCCCTA
1 TTCCTTCAACCCTTCAAGCTCCTTACTTTCTTCCCTA
* ** * * ***
10956528 TTCCTTCAATCCTTCAAATTCCATATTTTCTTCTAGA
1 TTCCTTCAACCCTTCAAGCTCCTTACTTTCTTCCCTA
* *** * *
10956565 TT-CTCACAACCCTTCAAGCTCCTTAAAATATTCCCTT
1 TTCCT-TCAACCCTTCAAGCTCCTTACTTTCTTCCCTA
* * *
10956602 TTCCTTCAAACCTTGAAGCTCCTTACTTTCTTCCCGA
1 TTCCTTCAACCCTTCAAGCTCCTTACTTTCTTCCCTA
* * * * * *
10956639 TTCATTCAACCCTTAAAGATCCCTATTTTCTTCCCTC
1 TTCCTTCAACCCTTCAAGCTCCTTACTTTCTTCCCTA
* * * *
10956676 TTGCTTCAACCCTTCAAACT-CTCTACTTTCTTCCATC
1 TTCCTTCAACCCTTCAAGCTCCT-TACTTTCTTCCCTA
* * * *
10956713 TTCCTTAAACACATCAAGTTTCC-TACTTTCTT
1 TTCCTTCAACCCTTCAAG-CTCCTTACTTTCTT
10956745 ATTGACTCCA
Statistics
Matches: 159, Mismatches: 53, Indels: 10
0.72 0.24 0.05
Matches are distributed among these distances:
36 3 0.02
37 152 0.96
38 3 0.02
39 1 0.01
ACGTcount: A:0.22, C:0.34, G:0.04, T:0.40
Consensus pattern (37 bp):
TTCCTTCAACCCTTCAAGCTCCTTACTTTCTTCCCTA
Found at i:10960455 original size:37 final size:37
Alignment explanation
Indices: 10960405--10960599 Score: 137
Period size: 37 Copynumber: 5.3 Consensus size: 37
10960395 ATCGTACACA
*
10960405 TTCCTTCAACCCTTCAAGATCCCTATATTCTTCCATT
1 TTCCTTCAACCCTTGAAGATCCCTATATTCTTCCATT
* * * **
10960442 TTCCTTCAACCCTTGAA-ACTCCCTATTTTTTTCTAGA
1 TTCCTTCAACCCTTGAAGA-TCCCTATATTCTTCCATT
* * * * * * * *
10960479 TTCCATCAACCCTTCAAGCTCCTTACAATATTCCCTT
1 TTCCTTCAACCCTTGAAGATCCCTATATTCTTCCATT
* * *
10960516 TTCCTTCAA-CCTTGAAGCTCTCTATTTTCTTCTCGA--
1 TTCCTTCAACCCTTGAAGATCCCTATATTCTTC-C-ATT
* * *
10960552 TTCATTCAACCCTTGAAGATCCCTATGTTCTTCCCTT
1 TTCCTTCAACCCTTGAAGATCCCTATATTCTTCCATT
* *
10960589 TTACTCCAACC
1 TTCCTTCAACC
10960600 TGTCAAACAC
Statistics
Matches: 116, Mismatches: 35, Indels: 14
0.70 0.21 0.08
Matches are distributed among these distances:
36 26 0.22
37 90 0.78
ACGTcount: A:0.21, C:0.34, G:0.05, T:0.40
Consensus pattern (37 bp):
TTCCTTCAACCCTTGAAGATCCCTATATTCTTCCATT
Found at i:10960586 original size:73 final size:73
Alignment explanation
Indices: 10960404--10960621 Score: 240
Period size: 73 Copynumber: 3.0 Consensus size: 73
10960394 AATCGTACAC
* *
10960404 ATTCCTTCAACCCTTCAAGATCCCTATATTCTTCCATTTTCCTTCAACCCTTGAAACTCCCTATT
1 ATTCATTCAACCCTTCAAGATCCCTATATTCTTCCCTTTTCCTTCAA-CCTTGAAACTCCCTATT
*
10960469 TTTTTCTAG
65 TTCTTCTAG
* * * * * * *
10960478 ATTCCA-TCAACCCTTCAAGCTCCTTACAATATTCCCTTTTCCTTCAACCTTGAAGCTCTCTATT
1 ATT-CATTCAACCCTTCAAGATCCCTATATTCTTCCCTTTTCCTTCAACCTTGAAACTCCCTATT
*
10960542 TTCTTCTCG
65 TTCTTCTAG
* * * * * * *
10960551 ATTCATTCAACCCTTGAAGATCCCTATGTTCTTCCCTTTTACTCCAACCTGTCAAACACCCTACT
1 ATTCATTCAACCCTTCAAGATCCCTATATTCTTCCCTTTTCCTTCAACCT-TGAAACTCCCTATT
10960616 TTCTTC
65 TTCTTC
10960622 CCTCTTCCTT
Statistics
Matches: 116, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
72 2 0.02
73 60 0.52
74 53 0.46
75 1 0.01
ACGTcount: A:0.22, C:0.34, G:0.05, T:0.39
Consensus pattern (73 bp):
ATTCATTCAACCCTTCAAGATCCCTATATTCTTCCCTTTTCCTTCAACCTTGAAACTCCCTATTT
TCTTCTAG
Found at i:10963272 original size:37 final size:36
Alignment explanation
Indices: 10963195--10963357 Score: 152
Period size: 37 Copynumber: 4.4 Consensus size: 36
10963185 TCCTTATTGA
* * *
10963195 TTCAACCTTTCAAACTCCTTAC-TTCTCCCCGATTCC
1 TTCAACCTTTCAAGCTTCTTACTTTCT-CCCAATTCC
* * *
10963231 TTCAACCTTTCAAGCTTCATACTTTCTCCATAATTCT
1 TTCAACCTTTCAAGCTTCTTACTTTCTCC-CAATTCC
10963268 TTCAACCTTTCAAGCTTCTTACTTTCTTCCCAATTCC
1 TTCAACCTTTCAAGCTTCTTACTTTC-TCCCAATTCC
* * * * *
10963305 TTCAACTCTTT-AAGCTTCCTAGTTTGTTCTCGATTCC
1 TTCAAC-CTTTCAAGCTTCTTACTTT-CTCCCAATTCC
10963342 TTCAACTCTTT-AAGCT
1 TTCAAC-CTTTCAAGCT
10963358 ACCTTATTTC
Statistics
Matches: 108, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
36 21 0.19
37 80 0.74
38 7 0.06
ACGTcount: A:0.20, C:0.33, G:0.05, T:0.42
Consensus pattern (36 bp):
TTCAACCTTTCAAGCTTCTTACTTTCTCCCAATTCC
Found at i:10963346 original size:74 final size:74
Alignment explanation
Indices: 10963195--10963370 Score: 191
Period size: 74 Copynumber: 2.4 Consensus size: 74
10963185 TCCTTATTGA
* * *
10963195 TTCAACCTTTCAAACTCCTTAC-TTCTCCCCGATTCCTTCAACCTTTCAAGCTTCATACTTTCTC
1 TTCAACCTTTCAAGCTCCTTACTTTCTTCCCAATTCCTTCAACCTTTCAAGCTTCATACTTTCTC
*
10963259 CATAATTCT
66 CATAATTCC
* * * *
10963268 TTCAACCTTTCAAGCTTCTTACTTTCTTCCCAATTCCTTCAACTCTTT-AAGCTTCCTAGTTTGT
1 TTCAACCTTTCAAGCTCCTTACTTTCTTCCCAATTCCTTCAAC-CTTTCAAGCTTCATACTTTCT
* *
10963332 TC-TCGATTCC
65 CCAT-AATTCC
10963342 TTCAACTCTTT-AAGCTACCTTA-TTTCTTC
1 TTCAAC-CTTTCAAGCT-CCTTACTTTCTTC
10963371 ACTCTTCTTT
Statistics
Matches: 87, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
73 21 0.24
74 54 0.62
75 12 0.14
ACGTcount: A:0.20, C:0.32, G:0.05, T:0.43
Consensus pattern (74 bp):
TTCAACCTTTCAAGCTCCTTACTTTCTTCCCAATTCCTTCAACCTTTCAAGCTTCATACTTTCTC
CATAATTCC
Found at i:10964479 original size:37 final size:37
Alignment explanation
Indices: 10964424--10964696 Score: 201
Period size: 37 Copynumber: 7.4 Consensus size: 37
10964414 AATTGAATTC
* * * * *
10964424 CTTCCTTTAACCCCTCAAGCTCCCTACGTTCTGCCCT
1 CTTCCTTCAACCCTTCAAACTCCCTACTTTCTTCCCT
* * *
10964461 CTTCCTTCAACCCTTCAAGCTCCCTAATTTCTTCCCA
1 CTTCCTTCAACCCTTCAAACTCCCTACTTTCTTCCCT
* * * *
10964498 ATTCATTCAACCCTTGAAAATCCCTA-TATTCTTCCCT
1 CTTCCTTCAACCCTTCAAACTCCCTACT-TTCTTCCCT
* *
10964535 CTTGCTTCAACCCTTCAAACTCTCTACTTTCTTCCCT
1 CTTCCTTCAACCCTTCAAACTCCCTACTTTCTTCCCT
* * * *
10964572 CTTCCTTCAA-CCTACCAAGCTTCCTACTTTCTTCCCAA
1 CTTCCTTCAACCCT-TCAAACTCCCTACTTTCTTCCC-T
* ** * * * * *
10964610 C-TCCATCAACCCTTTGAGCTTCCTAGTTTATTCCCG
1 CTTCCTTCAACCCTTCAAACTCCCTACTTTCTTCCCT
* * * * * *
10964646 ATTCCTTCAACTCTTCAATCTTCCTATTTTTTTCCCT
1 CTTCCTTCAACCCTTCAAACTCCCTACTTTCTTCCCT
*
10964683 TTTCCTTCAACCCT
1 CTTCCTTCAACCCT
10964697 CATCATCCCA
Statistics
Matches: 188, Mismatches: 42, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
36 4 0.02
37 179 0.95
38 5 0.03
ACGTcount: A:0.18, C:0.39, G:0.04, T:0.38
Consensus pattern (37 bp):
CTTCCTTCAACCCTTCAAACTCCCTACTTTCTTCCCT
Found at i:10964644 original size:111 final size:110
Alignment explanation
Indices: 10964425--10964694 Score: 260
Period size: 111 Copynumber: 2.4 Consensus size: 110
10964415 ATTGAATTCC
* * * * * * *
10964425 TTCCTTTAACCCCTCAAGCTCCCTACGTTCTGCCCTCTTCCTTCAACCCTTCAAGCTCCCTAATT
1 TTCCTTCAACCCTTCAAACTCTCTACTTTCTTCCCTCTTCCTTCAA-CCTCCAAGCTCCCTAATT
* * **
10964490 TCTTCCCAATTCATTCAACCCTTGAAAATCCCTATATTCTTCCCTC
65 TCTTCCCAATCCATTCAACCCTTGAAAATCCCTATATTATTCCCGA
* * *
10964536 TTGCTTCAACCCTTCAAACTCTCTACTTTCTTCCCTCTTCCTTCAACCTACCAAGCTTCCTACTT
1 TTCCTTCAACCCTTCAAACTCTCTACTTTCTTCCCTCTTCCTTCAACCT-CCAAGCTCCCTAATT
** *
10964601 TCTTCCCAACTCCA-TCAACCCTTTG-AGCTTCCTAGT-TTATTCCCGA
65 TCTTCCCAA-TCCATTCAACCC-TTGAAAATCCCTA-TATTATTCCCGA
* * * * *
10964647 TTCCTTCAACTCTTCAATCT-TCCTATTTTTTTCCCTTTTCCTTCAACC
1 TTCCTTCAACCCTTCAAACTCT-CTACTTTCTTCCCTCTTCCTTCAACC
10964695 CTCATCATCC
Statistics
Matches: 131, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
110 4 0.03
111 120 0.92
112 7 0.05
ACGTcount: A:0.19, C:0.39, G:0.04, T:0.39
Consensus pattern (110 bp):
TTCCTTCAACCCTTCAAACTCTCTACTTTCTTCCCTCTTCCTTCAACCTCCAAGCTCCCTAATTT
CTTCCCAATCCATTCAACCCTTGAAAATCCCTATATTATTCCCGA
Found at i:10965656 original size:74 final size:72
Alignment explanation
Indices: 10965535--10965750 Score: 225
Period size: 74 Copynumber: 2.9 Consensus size: 72
10965525 TTGCACGCCT
* * * * * *
10965535 TCCTTCAACACTTCAAGCTCCCTACATTTTTCCCTCTTCTTTTAACCCTTCAAGCACCCTACTTT
1 TCCTTCAACACTTCAAGCTCCCTAAATCTTT-CCTTTTCCTTCAACCCTTCAAGCTCCCTACTTT
*
10965600 CTTTTTGAG
65 CTTTCTG-G
* **
10965609 TCCTTCAACACTTCGAGCTCCCTATAATCTTTCCTTTTCCTTCAACCCTTCAAGCTCCCTACAAT
1 TCCTTCAACACTTCAAGCTCCCTA-AATCTTTCCTTTTCCTTCAACCCTTCAAGCTCCCTACTTT
*
10965674 CTTTCTGT
65 CTTTCTGG
* * * * * * *
10965682 TCCTTTAAACCCTTTAAGCTCCCTACAATCTTTCATTTTCCTTCAATCCTTGAAGCTCCTTACTT
1 TCC-TTCAACACTTCAAGCTCCCTA-AATCTTTCCTTTTCCTTCAACCCTTCAAGCTCCCTACTT
10965747 TCTT
64 TCTT
10965751 CCCAATTCAT
Statistics
Matches: 118, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
73 3 0.03
74 110 0.93
75 5 0.04
ACGTcount: A:0.19, C:0.35, G:0.05, T:0.41
Consensus pattern (72 bp):
TCCTTCAACACTTCAAGCTCCCTAAATCTTTCCTTTTCCTTCAACCCTTCAAGCTCCCTACTTTC
TTTCTGG
Found at i:10965828 original size:37 final size:37
Alignment explanation
Indices: 10965533--10965918 Score: 195
Period size: 37 Copynumber: 10.4 Consensus size: 37
10965523 AATTGCACGC
* * *
10965533 CTTCCTTCAACACTTCAAGCTCCCTACATTT-TTCCCT
1 CTTCCTTCAACCCTTCAAACTCCCTA-TTTTCTTCCCT
* * * * * **
10965570 CTTCTTTTAACCCTTCAAGCACCCTACTTTCTT-TTT
1 CTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
** * * * ** *
10965606 GAGTCCTTCAACACTTCGAGCTCCCTATAATCTTTCCT
1 -CTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
* * *** *
10965644 TTTCCTTCAACCCTTCAAGCTCCCTACAATCTT-TCT
1 CTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
* * * * *** * *
10965680 GTTCCTTTAAACCCTTTAAGCTCCCTACAATCTTTCAT
1 CTTCC-TTCAACCCTTCAAACTCCCTATTTTCTTCCCT
* * * * * * *
10965718 TTTCCTTCAATCCTTGAAGCTCCTTACTTTCTTCCCA
1 CTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
* * * *
10965755 ATTCATTCAACCCTT-AAAGATCCCTATGTTCTTCCCT
1 CTTCCTTCAACCCTTCAAA-CTCCCTATTTTCTTCCCT
*
10965792 CTTGCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
1 CTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
* * * * * * *
10965829 CTTCCTTTAACCCTTCGATCTTCCTAGTTTATTCCCG
1 CTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
* * * * *
10965866 ATTCCTTTAACCCTTCAAGCTCCCTACTTTCTTACCT
1 CTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
10965903 CTTCCTTCAACCCTTC
1 CTTCCTTCAACCCTTC
10965919 TCATCCCATT
Statistics
Matches: 270, Mismatches: 72, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
36 12 0.04
37 249 0.92
38 9 0.03
ACGTcount: A:0.19, C:0.37, G:0.05, T:0.40
Consensus pattern (37 bp):
CTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCT
Found at i:10965834 original size:111 final size:111
Alignment explanation
Indices: 10965719--10965918 Score: 244
Period size: 111 Copynumber: 1.8 Consensus size: 111
10965709 ATCTTTCATT
* *
10965719 TTCCTTCAATCCTT-GAAGC-TCCTTACTTTCTTCCCAATTCATTCAACCCTTAAAGATCCCTA-
1 TTCCTTCAACCCTTCG-AGCTTCC-TACTTTATTCCCAATTCATTCAACCCTTAAAGATCCCTAC
* *
10965781 TGTTCTTCCCTCTTGCTTCAACCCTTCAAACTCCCTATTTTCTTCCCTC
64 T-TTCTTACCTCTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCTC
* * * * * * * *
10965830 TTCCTTTAACCCTTCGATCTTCCTAGTTTATTCCCGATTCCTTTAACCCTTCAAGCTCCCTACTT
1 TTCCTTCAACCCTTCGAGCTTCCTACTTTATTCCCAATTCATTCAACCCTTAAAGATCCCTACTT
10965895 TCTTACCTCTTCCTTCAACCCTTC
66 TCTTACCTCTTCCTTCAACCCTTC
10965919 TCATCCCATT
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
111 69 0.93
112 5 0.07
ACGTcount: A:0.17, C:0.38, G:0.04, T:0.41
Consensus pattern (111 bp):
TTCCTTCAACCCTTCGAGCTTCCTACTTTATTCCCAATTCATTCAACCCTTAAAGATCCCTACTT
TCTTACCTCTTCCTTCAACCCTTCAAACTCCCTATTTTCTTCCCTC
Found at i:10972630 original size:19 final size:19
Alignment explanation
Indices: 10972606--10972654 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
10972596 TGAGAGTTTC
* *
10972606 TTTTATATTTCTTCTTCTG
1 TTTTATATTTCCTCTTCAG
*
10972625 TTTTATTAGTTCCTCTTCAG
1 TTTTA-TATTTCCTCTTCAG
*
10972645 TTTAATATTT
1 TTTTATATTT
10972655 TGAAGCTGTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.16, C:0.14, G:0.06, T:0.63
Consensus pattern (19 bp):
TTTTATATTTCCTCTTCAG
Found at i:10975169 original size:27 final size:27
Alignment explanation
Indices: 10975119--10975171 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
10975109 TGACGATATT
10975119 ATAATATTTTTTTAATTAATTTAAATG
1 ATAATATTTTTTTAATTAATTTAAATG
10975146 ATAAT-TTTATTTGTAATTAA-TTAAAT
1 ATAATATTT-TTT-TAATTAATTTAAAT
10975172 TAATAAGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 3 0.12
27 14 0.58
28 7 0.29
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.55
Consensus pattern (27 bp):
ATAATATTTTTTTAATTAATTTAAATG
Found at i:10975177 original size:28 final size:27
Alignment explanation
Indices: 10975119--10975177 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 27
10975109 TGACGATATT
*
10975119 ATAATATTTTTTTAATTAATTTAAATG
1 ATAATATTTTTTTAATTAATTTAAATA
10975146 ATAAT-TTTATTTGTAATTAA-TTAAATTA
1 ATAATATTT-TTT-TAATTAATTTAAA-TA
10975174 ATAA
1 ATAA
10975178 GAGCTAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 3 0.11
27 13 0.46
28 12 0.43
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (27 bp):
ATAATATTTTTTTAATTAATTTAAATA
Found at i:10976573 original size:44 final size:44
Alignment explanation
Indices: 10976519--10976678 Score: 108
Period size: 44 Copynumber: 3.3 Consensus size: 44
10976509 GGGTTTTATG
10976519 ATTTT-TTAGTAATGTAATTTTAAAATAAAATAATTTTATTGTT
1 ATTTTGTTAGTAATGTAATTTTAAAATAAAATAATTTTATTGTT
* *** *
10976562 ATTTTGTTAGTAATTTATGATTAGTTTATAAAT-TGTTAGTGTTTAGTTTAGGGTTTT
1 ATTTTGTTAGTAATGTA--A-T--TTTA-AAATAAAATAAT-TTTA--TT---G--TT
*
10976619 ATGATTTTTTAGTAATGTAATTTTAAAATAAAATAATTTTATTGTT
1 AT--TTTGTTAGTAATGTAATTTTAAAATAAAATAATTTTATTGTT
10976665 ATTTTGTTAGTAAT
1 ATTTTGTTAGTAAT
10976679 TTATGATTAG
Statistics
Matches: 87, Mismatches: 12, Indels: 35
0.65 0.09 0.26
Matches are distributed among these distances:
43 5 0.06
44 21 0.24
46 5 0.06
47 1 0.01
48 1 0.01
49 7 0.08
50 8 0.09
51 2 0.02
52 2 0.02
53 8 0.09
54 7 0.08
55 1 0.01
56 1 0.01
57 5 0.06
59 13 0.15
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.54
Consensus pattern (44 bp):
ATTTTGTTAGTAATGTAATTTTAAAATAAAATAATTTTATTGTT
Found at i:10976580 original size:103 final size:102
Alignment explanation
Indices: 10976451--10976949 Score: 679
Period size: 103 Copynumber: 4.9 Consensus size: 102
10976441 TAAAAAGGTG
10976451 TTATAGTTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTAGTGTTTAGTTTAGGGTTTT
1 TTATAGTTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTAGTGTTTAGTTTAGGGTTTT
10976516 ATGATTTTTTAGTAATGTAATTTTAAAATAAAATAATT
66 ATGATTTTTTAGTAATGTAATTTT-AAATAAAATAATT
*
10976554 TTATTGTTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTAGTGTTTAGTTTAGGGTTTT
1 TTATAGTTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTAGTGTTTAGTTTAGGGTTTT
10976619 ATGATTTTTTAGTAATGTAATTTTAAAATAAAATAATT
66 ATGATTTTTTAGTAATGTAATTTT-AAATAAAATAATT
* * *
10976657 TTATTGTTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTA----TT-GTATAGTGTT
1 TTATAGTTATTTTGTTAGTAATTTATGATTA-GTT-TATAAATTGTTAGTGTTTAGTTTAGGGTT
* * ** * *
10976717 TTCTGATTTATTAGTAATGTAAATTATT-TTTAAAAAAATG
64 TTATGATTTTTTAGTAATGT-AATT-TTAAATAAAATAATT
* * *
10976757 TTATAGTTATTTTGTTGGTAATTTATGTTTGGTTTATAAATTGTTAGTGTTTAGTTT-GGGTTTT
1 TTATAGTTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTAGTGTTTAGTTTAGGGTTTT
* ***
10976821 GTGATTTTTTAGTAATGTAATTTTTTTTAAAAATAATT
66 ATGATTTTTTAGTAATGTAATTTTAAAT-AAAATAATT
* *
10976859 TTATAGTTATTTTGTTAGTAATTTATGATTAGGCTATATAAATTGTTAGTGTTTAGTTTAGTGTT
1 TTATAGTTATTTTGTTAGTAATTTATGATTA-G-TTTATAAATTGTTAGTGTTTAGTTTAGGGTT
* *
10976924 TTGTGATTTTTTATTAATGTAATTTT
64 TTATGATTTTTTAGTAATGTAATTTT
10976950 TTATAATGTA
Statistics
Matches: 357, Mismatches: 25, Indels: 26
0.88 0.06 0.06
Matches are distributed among these distances:
98 12 0.03
99 3 0.01
100 63 0.18
101 13 0.04
102 61 0.17
103 137 0.38
104 27 0.08
105 41 0.11
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.55
Consensus pattern (102 bp):
TTATAGTTATTTTGTTAGTAATTTATGATTAGTTTATAAATTGTTAGTGTTTAGTTTAGGGTTTT
ATGATTTTTTAGTAATGTAATTTTAAATAAAATAATT
Found at i:10976734 original size:203 final size:202
Alignment explanation
Indices: 10976451--10976949 Score: 675
Period size: 203 Copynumber: 2.4 Consensus size: 202
10976441 TAAAAAGGTG
*
10976451 TTATAGTTATTTTGTTAGTAATTTATGATTA-GTT-TATAAATTGTTAGTGTTTAGTTTAGGGTT
1 TTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTA--G-TTAGTTTAGTGTT
* * *
10976514 TTATGATTTTTTAGTAATGTAATTTTAAAATAAAATAATTTTATTGTTATTTTGTTAGTAATTTA
63 TTATGATTTTTTAGTAATGTAATTTT--AATAAAAAAATGTTATAGTTATTTTGTTAGTAATTTA
10976579 TGATTAGTTTATAAATTGTTAGTGTTTAGTTTAGGGTTTTATGATTTTTTAGTAATGTAATTTTA
126 TGATTAGTTTATAAATTGTTAGTGTTTAGTTT-GGGTTTTATGATTTTTTAGTAATGTAATTTTA
10976644 AA-ATAAAATAATT
190 AATA-AAAATAATT
* * *
10976657 TTATTGTTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTA-TT-GTATAGTGTTTTC
1 TTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTTAGTTTAGTGTTTTA
* ** * *
10976720 TGATTTATTAGTAATGTAAATTATTTTTAAAAAAATGTTATAGTTATTTTGTTGGTAATTTATGT
66 TGATTTTTTAGTAATGT-AATT-TTAATAAAAAAATGTTATAGTTATTTTGTTAGTAATTTATGA
* * ***
10976785 TTGGTTTATAAATTGTTAGTGTTTAGTTTGGGTTTTGTGATTTTTTAGTAATGTAATTTTTTTTA
129 TTAGTTTATAAATTGTTAGTGTTTAGTTTGGGTTTTATGATTTTTTAGTAATGTAATTTTAAATA
10976850 AAAATAATT
194 AAAATAATT
*
10976859 TTATAGTTATTTTGTTAGTAATTTATGATTAGGCTATATAAATTGTTAGTGTTTAGTTTAGTGTT
1 TTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTA--G-TTAGTTTAGTGTT
* *
10976924 TTGTGATTTTTTATTAATGTAATTTT
63 TTATGATTTTTTAGTAATGTAATTTT
10976950 TTATAATGTA
Statistics
Matches: 260, Mismatches: 23, Indels: 21
0.86 0.08 0.07
Matches are distributed among these distances:
202 85 0.33
203 88 0.34
204 6 0.02
205 4 0.02
206 36 0.14
207 29 0.11
208 12 0.05
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.55
Consensus pattern (202 bp):
TTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTTAGTTTAGTGTTTTA
TGATTTTTTAGTAATGTAATTTTAATAAAAAAATGTTATAGTTATTTTGTTAGTAATTTATGATT
AGTTTATAAATTGTTAGTGTTTAGTTTGGGTTTTATGATTTTTTAGTAATGTAATTTTAAATAAA
AATAATT
Found at i:10976956 original size:15 final size:16
Alignment explanation
Indices: 10976929--10976964 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
10976919 GTGTTTTGTG
10976929 ATTTTTTATTAATGTA
1 ATTTTTTATTAATGTA
10976945 ATTTTTTA-TAATGTA
1 ATTTTTTATTAATGTA
10976960 ATTTT
1 ATTTT
10976965 ATTTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.64
Consensus pattern (16 bp):
ATTTTTTATTAATGTA
Found at i:10979069 original size:33 final size:33
Alignment explanation
Indices: 10979000--10979114 Score: 122
Period size: 33 Copynumber: 3.5 Consensus size: 33
10978990 ATCCACTTCA
* * * * *
10979000 GTACTCCATTCTTTCTGGCCCATACCCACCGCC
1 GTACTCCACTCTTCCTGGCCCGTATCCACAGCC
* *
10979033 GTACTCCACTCTTCCTAGCCCGTATCCACAGTC
1 GTACTCCACTCTTCCTGGCCCGTATCCACAGCC
* * * *
10979066 GTACTCCACTCTTCCCGGCCGGTATCTACTGCC
1 GTACTCCACTCTTCCTGGCCCGTATCCACAGCC
10979099 GTACTCCACTACTTCC
1 GTACTCCACT-CTTCC
10979115 GGCTCAAATT
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
33 63 0.93
34 5 0.07
ACGTcount: A:0.16, C:0.43, G:0.13, T:0.28
Consensus pattern (33 bp):
GTACTCCACTCTTCCTGGCCCGTATCCACAGCC
Found at i:10979425 original size:76 final size:77
Alignment explanation
Indices: 10979309--10979616 Score: 457
Period size: 77 Copynumber: 4.1 Consensus size: 77
10979299 AATAACTTCA
* * * *
10979309 TATTTATATAATGAC-TTTTTTCCATTTAAGTTATTAATTTTATGGGTTTT-TTTGTAATTTAAA
1 TATTTATGTAATGACTTTTTTTCCATTTTAGTTATTAATTTTATGGGTTTTGTTCGCAATTTAAA
10979372 TAGTCAACTTTG
66 TAGTCAACTTTG
10979384 TATTTATGTAATGACTTTTTTTCCATTTTAGTTATTAATTTTATGGGTTTTGTTCGCAATTTAAA
1 TATTTATGTAATGACTTTTTTTCCATTTTAGTTATTAATTTTATGGGTTTTGTTCGCAATTTAAA
10979449 TAGTCAACTTTG
66 TAGTCAACTTTG
10979461 TATTTATGTAATGACTTTTTTTCCATTTTAGTTATTAATTTTATGGGTTTTGTTCGCAATTTAAA
1 TATTTATGTAATGACTTTTTTTCCATTTTAGTTATTAATTTTATGGGTTTTGTTCGCAATTTAAA
10979526 TAGTCAACTTTG
66 TAGTCAACTTTG
* * * *
10979538 TATTTATGTAATGAATTTTTTGT-TATTTCAGTTATTAATTTTA-GGAGTTTT-TT-ACAATTTA
1 TATTTATGTAATGACTTTTTT-TCCATTTTAGTTATTAATTTTATGG-GTTTTGTTCGCAATTTA
* * *
10979599 AATAATAAACTTTA
64 AATAGTCAACTTTG
10979613 TATT
1 TATT
10979617 ATTTACGTAA
Statistics
Matches: 218, Mismatches: 11, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
75 36 0.17
76 38 0.17
77 143 0.66
78 1 0.00
ACGTcount: A:0.28, C:0.07, G:0.11, T:0.54
Consensus pattern (77 bp):
TATTTATGTAATGACTTTTTTTCCATTTTAGTTATTAATTTTATGGGTTTTGTTCGCAATTTAAA
TAGTCAACTTTG
Found at i:10983262 original size:19 final size:19
Alignment explanation
Indices: 10983238--10983293 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 19
10983228 AATTTTTGAG
10983238 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
10983257 GATATGTGCAATCTTGGATAT
1 GATA--TGCAATCTTAGATAT
10983278 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
10983294 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
21 18 0.55
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:10983268 original size:21 final size:21
Alignment explanation
Indices: 10983242--10983300 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
10983232 TTTGAGGATA
10983242 TGCAATCTTAGATATGATATG
1 TGCAATCTTAGATATGATATG
*
10983263 TGCAATCTTGGATATGATA--
1 TGCAATCTTAGATATGATATG
10983282 TGCAATCTTAGA-A-GATATG
1 TGCAATCTTAGATATGATATG
10983301 ATTTTGTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
17 4 0.12
18 1 0.03
19 11 0.32
21 18 0.53
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (21 bp):
TGCAATCTTAGATATGATATG
Found at i:10983564 original size:3 final size:3
Alignment explanation
Indices: 10983556--10983734 Score: 116
Period size: 3 Copynumber: 58.7 Consensus size: 3
10983546 TAACTTAACG
* *
10983556 TAT TAT TAT TACT T-T TAT TAT TAT TAC CAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
10983601 TAT TAT TAT TAT TAT TACT TA- CAT TCAT TAG TAT CAT TAT TAAT T-T
1 TAT TAT TAT TAT TAT TA-T TAT TAT T-AT TAT TAT TAT TAT T-AT TAT
* * * * *
10983647 TGT CT-T TAT T-T TCTT TAC TAT TAT TTT TAT TAT CAT TAAT TAT TAT
1 TAT -TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT
* * * * *
10983693 TAT TAT TGTT TAT TAT TAC AAT TAT TAT TAG TAT TAT CAT TA
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
10983735 CTGCCATTAT
Statistics
Matches: 136, Mismatches: 27, Indels: 26
0.72 0.14 0.14
Matches are distributed among these distances:
2 8 0.06
3 109 0.80
4 19 0.14
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:10983941 original size:4 final size:4
Alignment explanation
Indices: 10983932--10983967 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
10983922 TTGTTTACAC
*
10983932 TTTA TTTA TTTA TTTA TTTA TTTG TTTA TATTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTT
10983968 CTATGCCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 25 0.86
5 4 0.14
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:10984015 original size:19 final size:20
Alignment explanation
Indices: 10983974--10984015 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
10983964 ATTTCTATGC
* *
10983974 CATTGTAATATTTATTATTG
1 CATTGTAATATTTAATATAG
*
10983994 CATTGT-ATATTTAATGTAG
1 CATTGTAATATTTAATATAG
10984013 CAT
1 CAT
10984016 CACATCTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (20 bp):
CATTGTAATATTTAATATAG
Found at i:10984368 original size:27 final size:27
Alignment explanation
Indices: 10984324--10984378 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
10984314 GGCTGCGATT
*
10984324 TTTTAAATCTTGAATAAATGAATATTC
1 TTTTAAATCTTGAATAAACGAATATTC
* * * *
10984351 TTTTAAATTTTTATTAAACGAGTATTC
1 TTTTAAATCTTGAATAAACGAATATTC
10984378 T
1 T
10984379 GGCTTAATTC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.49
Consensus pattern (27 bp):
TTTTAAATCTTGAATAAACGAATATTC
Found at i:10985014 original size:32 final size:32
Alignment explanation
Indices: 10984978--10985044 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 32
10984968 TTCAATCTAA
**
10984978 TTAGACTA-TTATCTAAATGTTTTCATAAAAGT
1 TTAGAC-AGTTATCTAAATACTTTCATAAAAGT
10985010 TTAGACAGTTATCTAAATACTTTCATAAAAGT
1 TTAGACAGTTATCTAAATACTTTCATAAAAGT
10985042 TTA
1 TTA
10985045 TATTTAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 1 0.03
32 31 0.97
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.42
Consensus pattern (32 bp):
TTAGACAGTTATCTAAATACTTTCATAAAAGT
Found at i:10988762 original size:31 final size:30
Alignment explanation
Indices: 10988727--10988813 Score: 81
Period size: 31 Copynumber: 2.9 Consensus size: 30
10988717 TGTATGATTA
10988727 AATCAAAATTAAAGTTTCAAGTATACATTTG
1 AATCAAAATTAAAGTTTCAAGTATACA-TTG
* *
10988758 AATCACAATTAGAGTTTCACATGTATA-ATTG
1 AATCAAAATTAAAGTTTCA-A-GTATACATTG
* * *
10988789 TA-CCAAATTAAAG-TTCATGTATACA
1 AATCAAAATTAAAGTTTCAAGTATACA
10988814 CTTGCATATT
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
27 5 0.11
28 1 0.02
29 4 0.09
30 8 0.17
31 21 0.46
32 2 0.04
33 5 0.11
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.34
Consensus pattern (30 bp):
AATCAAAATTAAAGTTTCAAGTATACATTG
Found at i:10988808 original size:27 final size:28
Alignment explanation
Indices: 10988777--10988845 Score: 77
Period size: 31 Copynumber: 2.4 Consensus size: 28
10988767 TAGAGTTTCA
10988777 CATGTATAATTG-TACCAAATTAAAGTT
1 CATGTATAATTGATACCAAATTAAAGTT
** *
10988804 CATGTATACACTTGCATATTAAATTGAAGTT
1 CATGTATA-A-TTG-ATACCAAATTAAAGTT
10988835 CATGTATAATT
1 CATGTATAATT
10988846 TTGATATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
27 8 0.23
28 1 0.03
29 5 0.14
30 1 0.03
31 20 0.57
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.39
Consensus pattern (28 bp):
CATGTATAATTGATACCAAATTAAAGTT
Found at i:10998697 original size:3 final size:3
Alignment explanation
Indices: 10998689--10998715 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
10998679 GTATGTTGTG
10998689 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
10998716 ATCAAAGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:11001036 original size:15 final size:16
Alignment explanation
Indices: 11001007--11001036 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11000997 CAAACATGCT
11001007 TTAACACATTATCAAA
1 TTAACACATTATCAAA
11001023 TTAACACA-TATCAA
1 TTAACACATTATCAA
11001037 CCAGACATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:11002183 original size:25 final size:24
Alignment explanation
Indices: 11002155--11002310 Score: 142
Period size: 25 Copynumber: 6.4 Consensus size: 24
11002145 ATGAGCTATG
* * *
11002155 AATCGATATGCTCTCACGAGCTGTA
1 AATCGGTAAGCTCTCAAGAGCTG-A
*
11002180 AATCGGTAAGCTCAT-ATGAGCTGA
1 AATCGGTAAGCTC-TCAAGAGCTGA
11002204 GAATCGGTAAGCTCTCAAGAGCTGA
1 -AATCGGTAAGCTCTCAAGAGCTGA
11002229 AATCGGTAAGCTCATTC--GAGCTGA
1 AATCGGTAAGCTC--TCAAGAGCTGA
11002253 AATCGGTAAGCTCATTC-A-AGCTGA
1 AATCGGTAAGCTC--TCAAGAGCTGA
* *
11002277 GAATTGGTAAGCTCTCACGAGCTGA
1 -AATCGGTAAGCTCTCAAGAGCTGA
*
11002302 AATCAGTAA
1 AATCGGTAA
11002311 TCCCTAATGA
Statistics
Matches: 114, Mismatches: 8, Indels: 19
0.81 0.06 0.13
Matches are distributed among these distances:
23 2 0.02
24 52 0.46
25 57 0.50
26 3 0.03
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (24 bp):
AATCGGTAAGCTCTCAAGAGCTGA
Found at i:11002218 original size:50 final size:49
Alignment explanation
Indices: 11002139--11002290 Score: 179
Period size: 49 Copynumber: 3.1 Consensus size: 49
11002129 GTACATGTAT
* * *
11002139 GCTCATATGAGCT-ATGAATCGATATGCTCTCACGAGCTGTAAATCGGTAA
1 GCTCATATGAGCTGA-GAATCGGTAAGCTCTCAAGAGCTG-AAATCGGTAA
11002189 GCTCATATGAGCTGAGAATCGGTAAGCTCTCAAGAGCTGAAATCGGTAA
1 GCTCATATGAGCTGAGAATCGGTAAGCTCTCAAGAGCTGAAATCGGTAA
*
11002238 GCTCAT-TCGAGCTGA-AATCGGTAAGCTCATTC-A-AGCTGAGAATTGGTAA
1 GCTCATAT-GAGCTGAGAATCGGTAAGCTC--TCAAGAGCTGA-AATCGGTAA
11002287 GCTC
1 GCTC
11002291 TCACGAGCTG
Statistics
Matches: 93, Mismatches: 4, Indels: 11
0.86 0.04 0.10
Matches are distributed among these distances:
48 20 0.22
49 36 0.39
50 36 0.39
51 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (49 bp):
GCTCATATGAGCTGAGAATCGGTAAGCTCTCAAGAGCTGAAATCGGTAA
Found at i:11002275 original size:73 final size:74
Alignment explanation
Indices: 11002171--11002310 Score: 221
Period size: 73 Copynumber: 1.9 Consensus size: 74
11002161 TATGCTCTCA
* *
11002171 CGAGCTGTAAATCGGTAAGCTCATATGAGCTGAGAATCGGTAAGCTCTCAAGAGCTGAAATCGGT
1 CGAGCTGTAAATCGGTAAGCTCATATAAGCTGAGAATCGGTAAGCTCTCAAGAGCTGAAATCAGT
11002236 AAGCTCATT
66 AAGCTCATT
* *
11002245 CGAGCTG-AAATCGGTAAGCTCAT-TCAAGCTGAGAATTGGTAAGCTCTCACGAGCTGAAATCAG
1 CGAGCTGTAAATCGGTAAGCTCATAT-AAGCTGAGAATCGGTAAGCTCTCAAGAGCTGAAATCAG
11002308 TAA
65 TAA
11002311 TCCCTAATGA
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
72 1 0.02
73 53 0.87
74 7 0.11
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (74 bp):
CGAGCTGTAAATCGGTAAGCTCATATAAGCTGAGAATCGGTAAGCTCTCAAGAGCTGAAATCAGT
AAGCTCATT
Found at i:11002298 original size:49 final size:48
Alignment explanation
Indices: 11002155--11002310 Score: 174
Period size: 49 Copynumber: 3.2 Consensus size: 48
11002145 ATGAGCTATG
* * * *
11002155 AATCGATATGCTCTCACGAGCTGTAAATCGGTAAGCTCATATGAGCTGA
1 AATCGGTAAGCTCTCAAGAGCTG-AAATCGGTAAGCTCATACGAGCTGA
*
11002204 GAATCGGTAAGCTCTCAAGAGCTGAAATCGGTAAGCTCATTCGAGCTGA
1 -AATCGGTAAGCTCTCAAGAGCTGAAATCGGTAAGCTCATACGAGCTGA
*
11002253 AATCGGTAAGCTCATTC-A-AGCTGAGAATTGGTAAGCTC-TCACGAGCTGA
1 AATCGGTAAGCTC--TCAAGAGCTGA-AATCGGTAAGCTCAT-ACGAGCTGA
*
11002302 AATCAGTAA
1 AATCGGTAA
11002311 TCCCTAATGA
Statistics
Matches: 94, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
48 20 0.21
49 52 0.55
50 22 0.23
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (48 bp):
AATCGGTAAGCTCTCAAGAGCTGAAATCGGTAAGCTCATACGAGCTGA
Found at i:11023129 original size:25 final size:28
Alignment explanation
Indices: 11023077--11023133 Score: 84
Period size: 25 Copynumber: 2.1 Consensus size: 28
11023067 TGACACATTG
11023077 TTAATATCATGATAATAGTAATAATATT
1 TTAATATCATGATAATAGTAATAATATT
*
11023105 TTAATATTATGAT-A-A-TAATAATATT
1 TTAATATCATGATAATAGTAATAATATT
11023130 TTAA
1 TTAA
11023134 ATAAAAATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 14 0.50
26 1 0.04
27 1 0.04
28 12 0.43
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.46
Consensus pattern (28 bp):
TTAATATCATGATAATAGTAATAATATT
Found at i:11023145 original size:25 final size:25
Alignment explanation
Indices: 11023090--11023141 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
11023080 ATATCATGAT
* * *
11023090 AATAGTAATAATATTTTAATATTAT
1 AATAATAATAATATTTTAATATAAA
*
11023115 GATAATAATAATATTTTAA-ATAAA
1 AATAATAATAATATTTTAATATAAA
11023139 AAT
1 AAT
11023142 TAATTTTAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (25 bp):
AATAATAATAATATTTTAATATAAA
Found at i:11030477 original size:59 final size:59
Alignment explanation
Indices: 11030407--11030521 Score: 212
Period size: 59 Copynumber: 1.9 Consensus size: 59
11030397 ATTGTCCCTT
*
11030407 AAACAATATATTATTTTCAATTCATGAATCAAACTCCTGAAGTTATCTTCTCTTGCCTC
1 AAACAACATATTATTTTCAATTCATGAATCAAACTCCTGAAGTTATCTTCTCTTGCCTC
*
11030466 AAACAACATATTATTTTCAATTCATGAATCTAACTCCTGAAGTTATCTTCTCTTGC
1 AAACAACATATTATTTTCAATTCATGAATCAAACTCCTGAAGTTATCTTCTCTTGC
11030522 ACATTCTTCC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (59 bp):
AAACAACATATTATTTTCAATTCATGAATCAAACTCCTGAAGTTATCTTCTCTTGCCTC
Done.