Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 46 of 205
Found at i:13574330 original size:46 final size:46
Alignment explanation
Indices: 13574209--13574475 Score: 175
Period size: 47 Copynumber: 5.7 Consensus size: 46
13574199 GGTGTTTCGT
* ** **
13574209 GTGCCAGTGTAAGACATGTCTGGGACATGCTTTGGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGA
* * *
13574255 GAGCTAGTGTAAGGACATGTCTGGAACATGCATCAG-CACAAAGATGA
1 GTGCCAGTGTAA-GACATGTCTGGGACATGCATCAGCCAC-AAGATGA
* * * *
13574302 GTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTCAACA-GA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGA
* ** * * * *
13574347 GATAGCTAGTGTAAGATTTGGCTGGGACACGCATCAG-C-TAAGA-GTT
1 G-T-GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATG-A
* * * * * **
13574393 GTGCTAGTGTAAGACATGTCTCGGACATGCACCAGTACGCATTTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCAG-CCACA-AGATGA
*
13574441 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
13574476 GATAATATAT
Statistics
Matches: 169, Mismatches: 39, Indels: 22
0.73 0.17 0.10
Matches are distributed among these distances:
44 27 0.16
45 8 0.05
46 41 0.24
47 62 0.37
48 13 0.08
49 14 0.08
50 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGA
Found at i:13574381 original size:93 final size:91
Alignment explanation
Indices: 13574209--13574423 Score: 229
Period size: 93 Copynumber: 2.3 Consensus size: 91
13574199 GGTGTTTCGT
* * **
13574209 GTGCCAGTGTAAGACATGTCTGGGACATGCTTTGGCCACATTATGAGAGCTAGTGTAAGGACATG
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAACATGAGAGCTAGTGTAAGGACATG
* *
13574274 TCTGGAACATGCATCAGCACAA-AGATGA
66 GCTGGAACACGCATCAGCA-AAGAG-T-A
* * **
13574302 GTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTCAACA-GAGATAGCTAGTGTAA-GATT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAACATGAG--AGCTAGTGTAAGGACA
* * *
13574365 TGGCTGGGACACGCATCAGCTAAGAGTT
64 TGGCTGGAACACGCATCAGCAAAGAGTA
* *
13574393 GTGCTAGTGTAAGACATGTCTCGGACATGCA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCA
13574424 CCAGTACGCA
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
91 28 0.27
92 6 0.06
93 58 0.56
94 11 0.11
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (91 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAACATGAGAGCTAGTGTAAGGACATG
GCTGGAACACGCATCAGCAAAGAGTA
Found at i:13581393 original size:93 final size:93
Alignment explanation
Indices: 13581265--13581436 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
13581255 GCCCATAAGT
* * *
13581265 GAACTCGGGCTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
13581330 CGACCTCGGATGCCTAGTTACATCTCTC
66 CGACCTCGGATGCCTAGTTACATCTCTC
* *
13581358 GAACTTGGACTCAACTCAAAGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAAAGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
**
13581422 ACGAGTTCGGATGCC
65 ACGACCTCGGATGCC
13581437 CAAATATCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAAAGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGACCTCGGATGCCTAGTTACATCTCTC
Found at i:13581432 original size:46 final size:45
Alignment explanation
Indices: 13581257--13581431 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
13581247 TGTAACCCGC
* *
13581257 CCATAAGTGAACTCGGGCTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
* *
13581303 CCATAAGTGAACTCGGACTCAACTCAACGACCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * * *
13581349 ACATCTCTCGAACTTGGACTCAACTCAAAGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
13581396 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
13581432 ATGCCCAAAT
Statistics
Matches: 103, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 63 0.61
47 29 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:13583263 original size:49 final size:49
Alignment explanation
Indices: 13583192--13583290 Score: 126
Period size: 49 Copynumber: 2.0 Consensus size: 49
13583182 ATACGGCCAA
* * * *
13583192 ATAGATAGGATTGTCTGCAATGTGGGACATGCCACTTGGGCGAATGCCG
1 ATAGACAGGAGTGTCTGCAATGTGGAACACGCCACTTGGGCGAATGCCG
* * **
13583241 ATAGACAGGAGTGTTTGCAATGTGGAAGACGTTACTTGGGCGAATGCCG
1 ATAGACAGGAGTGTCTGCAATGTGGAACACGCCACTTGGGCGAATGCCG
13583290 A
1 A
13583291 GTAAACGAGA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.24
Consensus pattern (49 bp):
ATAGACAGGAGTGTCTGCAATGTGGAACACGCCACTTGGGCGAATGCCG
Found at i:13584485 original size:221 final size:221
Alignment explanation
Indices: 13584103--13584607 Score: 967
Period size: 221 Copynumber: 2.3 Consensus size: 221
13584093 AGAAAGAGCA
*
13584103 GTCTTTCTGGAGGAGTTACCAGGGTTA-CCCTAGAAAGAAAGGTTGAGTTTGGTATCGAGTTGGG
1 GTCTTTCTGGAGGAGTTACCAGGGTTACCCCCAGAAAGAAAGGTTGAGTTTGGTATCGAGTTGGG
*
13584167 CCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGATATTTGAGAAA
66 CCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGATATTTAAGAAA
13584232 AGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATACCCAAGTGTCAAAGTCGAAGATTGAGTCAG
131 AGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATACCCAAGTGTCAAAGTCGAAGATTGAGTCAG
13584297 TACCAGTGGTTTGTGAGTTTATAGAC
196 TACCAGTGGTTTGTGAGTTTATAGAC
*
13584323 GTCTTTCTGGAGGAGTTACCAGGGTTACCCCCAGAAAGAAAGGGTGAGTTTGGTATCGAGTTGGG
1 GTCTTTCTGGAGGAGTTACCAGGGTTACCCCCAGAAAGAAAGGTTGAGTTTGGTATCGAGTTGGG
13584388 CCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGATATTTAAGAAA
66 CCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGATATTTAAGAAA
13584453 AGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATACCCAAGTGTCAAAGTCGAAGATTGAGTCAG
131 AGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATACCCAAGTGTCAAAGTCGAAGATTGAGTCAG
13584518 TACCAGTGGTTTGTGAGTTTATAGAC
196 TACCAGTGGTTTGTGAGTTTATAGAC
*
13584544 GTCTGTCTGGAGGAGTTACCAGGGTTACCCCCAGAAAGAAAGGTTGAGTTTGGTATCGAGTTGG
1 GTCTTTCTGGAGGAGTTACCAGGGTTACCCCCAGAAAGAAAGGTTGAGTTTGGTATCGAGTTGG
13584608 CTCCTGGTAC
Statistics
Matches: 279, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
220 27 0.10
221 252 0.90
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (221 bp):
GTCTTTCTGGAGGAGTTACCAGGGTTACCCCCAGAAAGAAAGGTTGAGTTTGGTATCGAGTTGGG
CCAGATGAGTCAGATAACTTGTCTGTGGTAATATCGTCTTTGGTAGCCGAAAGATATTTAAGAAA
AGGTTATGAAGCTTATCTAGCTTTTGTGCTGAATACCCAAGTGTCAAAGTCGAAGATTGAGTCAG
TACCAGTGGTTTGTGAGTTTATAGAC
Found at i:13587485 original size:20 final size:20
Alignment explanation
Indices: 13587460--13587508 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
13587450 CACAGATCCG
13587460 AAAAGCCTAAAATAATGCCC
1 AAAAGCCTAAAATAATGCCC
* *
13587480 AAAAGCCTAAAATAGTGCCT
1 AAAAGCCTAAAATAATGCCC
13587500 AAAAGCCTA
1 AAAAGCCTA
13587509 GCTATCATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.49, C:0.22, G:0.12, T:0.16
Consensus pattern (20 bp):
AAAAGCCTAAAATAATGCCC
Found at i:13588439 original size:47 final size:44
Alignment explanation
Indices: 13588338--13588504 Score: 131
Period size: 47 Copynumber: 3.7 Consensus size: 44
13588328 TTCGTGTGCC
* * * *
13588338 AGTGTAAGGCATGTCTGGGACATGGCATCGGC-ACAGAGATGAGTGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCAGCTA-AAAGATGA--GCT
* **
13588385 AGAGTAAGACATGTCTGGGACATGCATTGGCCTCGACAAAGAT-AGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CT--A-AAAGATGAGCT
** * * * *
13588432 AGTGTAAGATGTGGCTGGGACATGCATCAGCTAAGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTAAAAGATGAGCT
13588476 AGTGTAAGACATGTCTGGGACATGCATCA
1 AGTGTAAGACATGTCTGGGACATGCATCA
13588505 ATATGCATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
43 4 0.04
44 30 0.31
46 8 0.08
47 48 0.49
49 1 0.01
50 7 0.07
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTAAAAGATGAGCT
Found at i:13590208 original size:25 final size:25
Alignment explanation
Indices: 13590180--13590229 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
13590170 ATACATAACC
13590180 TATTTCTAAAAAGTTTAAATAAAAT
1 TATTTCTAAAAAGTTTAAATAAAAT
*
13590205 TATTTTTAAAAAGTTTAAATAAAAT
1 TATTTCTAAAAAGTTTAAATAAAAT
13590230 AAATCATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (25 bp):
TATTTCTAAAAAGTTTAAATAAAAT
Found at i:13596509 original size:26 final size:26
Alignment explanation
Indices: 13596480--13596555 Score: 84
Period size: 26 Copynumber: 2.9 Consensus size: 26
13596470 TTTCATCCTT
13596480 ATTTTACCCTTAGAAAAATTTTGACA
1 ATTTTACCCTTAGAAAAATTTTGACA
* *
13596506 ATTTTA-CCTATAGTAAAATTTTGACG
1 ATTTTACCCT-TAGAAAAATTTTGACA
* *
13596532 ATTTTTCCTCTT-GGAAAATTTTGA
1 ATTTTACC-CTTAGAAAAATTTTGA
13596556 GAAAATATGT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
25 3 0.07
26 36 0.84
27 2 0.05
28 2 0.05
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (26 bp):
ATTTTACCCTTAGAAAAATTTTGACA
Found at i:13598598 original size:47 final size:47
Alignment explanation
Indices: 13598526--13598667 Score: 225
Period size: 47 Copynumber: 3.0 Consensus size: 47
13598516 GTTGAATTTA
13598526 AAGCTTGTTAAA-TTGCTCTTAATATTTTCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTTCGGATAAGTTACTTAGTT
13598572 AAGCTTGTTAAATTTGCTCTTAATA-TTTCTGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTTC-GGATAAGTTACTTAGTT
* * * *
13598619 AAGCTTGTTAAATTTTCCCTTATTATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTTCGGATAAGTTACTTAGTT
13598666 AA
1 AA
13598668 AGAAAATTTT
Statistics
Matches: 89, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
46 16 0.18
47 70 0.79
48 3 0.03
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.46
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTTCGGATAAGTTACTTAGTT
Found at i:13599550 original size:43 final size:43
Alignment explanation
Indices: 13599457--13599632 Score: 185
Period size: 43 Copynumber: 4.0 Consensus size: 43
13599447 AATATCGCAC
* ** *
13599457 AATACTATTTGGGCCTTTAAGCCTAGCAGGCTATAATGCCGGTGA
1 AATACTATTCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGA
* * *
13599502 AATACTATTCGGGCTTCGAGCCTTGTAGGCGAAATGTCGGTGA
1 AATACTATTCGGGCTTCGAGCCTAGCAGGCGAAATGCCGGTGA
* * * * *
13599545 GATACTATTAGAGCTTTCAAGCCTAGCAGGCTATAATGCCGGTGA
1 AATACTATTCGGGC-TTCGAGCCTAGCAGGCGA-AATGCCGGTGA
13599590 AATGA-TA-TCGGGCTTCGAGCCTAGCAGGCGAAATGCCGGTGA
1 AAT-ACTATTCGGGCTTCGAGCCTAGCAGGCGAAATGCCGGTGA
13599632 A
1 A
13599633 TGAATTCGGG
Statistics
Matches: 108, Mismatches: 20, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
42 12 0.11
43 37 0.34
44 32 0.30
45 26 0.24
46 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (43 bp):
AATACTATTCGGGCTTCGAGCCTAGCAGGCGAAATGCCGGTGA
Found at i:13599584 original size:88 final size:86
Alignment explanation
Indices: 13599471--13599631 Score: 261
Period size: 87 Copynumber: 1.8 Consensus size: 86
13599461 CTATTTGGGC
* *
13599471 CTTTAAGCCTAGCAGGCTATAATGCCGGTGAAAT-ACTATTCGGGCTTCGAGCCTTGTAGGCGAA
1 CTTTAAGCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TCGGGCTTCGAGCCTAGCAGGCGAA
*
13599535 ATGTCGGTGAGATACTATTAGAG
64 ATGCCGGTGAGATACTATTAGAG
13599558 CTTTCAAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCGAGCCTAGCAGGCGAAA
1 CTTT-AAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCGAGCCTAGCAGGCGAAA
13599623 TGCCGGTGA
65 TGCCGGTGA
13599632 ATGAATTCGG
Statistics
Matches: 69, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
87 36 0.52
88 32 0.46
89 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (86 bp):
CTTTAAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCGAGCCTAGCAGGCGAAAT
GCCGGTGAGATACTATTAGAG
Found at i:13599655 original size:42 final size:41
Alignment explanation
Indices: 13599478--13599673 Score: 112
Period size: 43 Copynumber: 4.6 Consensus size: 41
13599468 GGCCTTTAAG
* * *
13599478 CCTAGCAGGCTATAATGCCGGTGAAAT-ACTATTCGGGCTTCGAG
1 CCTAGCAGGCGA-AATGCCGGTG-AATGA-TA-TCGGGCTTCAAA
* * * * * *
13599522 CCTTGTAGGCGAAATGTCGGTGAGAT-ACTATTAGAGCTTTCAAG
1 CCTAGCAGGCGAAATGCCGGTGA-ATGA-TA-TCGGGC-TTCAAA
* * *
13599566 CCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCGAG
1 CCTAGCAGGCGA-AATGCCGGTG-AATGATATCGGGCTTCAAA
* *
13599609 CCTAGCAGGCGAAATGCCGGTGAATGA-ATTCGGGTTTTTAAA
1 CCTAGCAGGCGAAATGCCGGTGAATGATA-TCGGG-CTTCAAA
*
13599651 CCTAGCAGGCTG-AATGCGGGTGA
1 CCTAGCAGGC-GAAATGCCGGTGA
13599674 TTTGATAAAA
Statistics
Matches: 124, Mismatches: 20, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
40 1 0.01
41 10 0.08
42 34 0.27
43 37 0.30
44 27 0.22
45 13 0.10
46 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (41 bp):
CCTAGCAGGCGAAATGCCGGTGAATGATATCGGGCTTCAAA
Found at i:13602009 original size:13 final size:13
Alignment explanation
Indices: 13601976--13602002 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
13601966 AAATATCTCT
13601976 AGAAATTTTATGA
1 AGAAATTTTATGA
13601989 AGAAATTTTATGA
1 AGAAATTTTATGA
13602002 A
1 A
13602003 ATGATTTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.37
Consensus pattern (13 bp):
AGAAATTTTATGA
Found at i:13611962 original size:43 final size:43
Alignment explanation
Indices: 13611901--13612048 Score: 110
Period size: 43 Copynumber: 3.5 Consensus size: 43
13611891 CAATGCTGAC
*
13611901 GTCCCAGAC-GTGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACAG-GGTCTTACATGTAATTCAATATCGATGCCTAT
** * *
13611944 GTCCCAGACAGGGTCTTACA-CAAAATCAGATA-CGATGCCAAAT
1 GTCCCAGACAGGGTCTTACATGTAATTCA-ATATCGATGCC-TAT
* * * * *
13611987 -TACCAGACATGGTCTTATATGTAAATCTC-A-ATCGAGGCCTGT
1 GTCCCAGACAGGGTCTTACATGT-AAT-TCAATATCGATGCCTAT
*
13612029 GTCCCAGACACGGTCTTACA
1 GTCCCAGACAGGGTCTTACA
13612049 CGATATCTCA
Statistics
Matches: 80, Mismatches: 17, Indels: 16
0.71 0.15 0.14
Matches are distributed among these distances:
42 30 0.38
43 45 0.56
44 3 0.04
45 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (43 bp):
GTCCCAGACAGGGTCTTACATGTAATTCAATATCGATGCCTAT
Found at i:13614111 original size:40 final size:40
Alignment explanation
Indices: 13614067--13614328 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
13614057 GCTCCTCGTT
* *
13614067 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
13614107 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
13614147 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
13614186 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
13614225 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
13614264 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
13614305 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
13614329 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:13621183 original size:70 final size:70
Alignment explanation
Indices: 13621070--13621207 Score: 231
Period size: 70 Copynumber: 2.0 Consensus size: 70
13621060 AGACTCAAAA
** *
13621070 AGGAATCTATGTATATATGGCATGACTTCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAA
1 AGGAATCTATCCATATATGGCATGACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAA
13621135 GTCGG
66 GTCGG
* *
13621140 AGGAATCTATCCATGTATGGTATGACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAA
1 AGGAATCTATCCATATATGGCATGACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAA
13621205 GTC
66 GTC
13621208 CGAACAGGAA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
70 63 1.00
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.38
Consensus pattern (70 bp):
AGGAATCTATCCATATATGGCATGACTCCTAATTATCTCTGGTTAATTTATAATGAATTTCCAAA
GTCGG
Found at i:13622231 original size:79 final size:81
Alignment explanation
Indices: 13622129--13622312 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
13622119 GCTCCTCGTT
* *
13622129 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
13622191 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
13622209 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
13622273 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
13622289 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
13622313 CATCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 14 0.15
79 56 0.61
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:13622246 original size:39 final size:41
Alignment explanation
Indices: 13622129--13622312 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
13622119 GCTCCTCGTT
* *
13622129 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
13622169 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
13622209 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
13622248 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
13622289 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
13622313 CATCATTCAA
Statistics
Matches: 128, Mismatches: 7, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 48 0.38
40 66 0.52
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:13622537 original size:73 final size:73
Alignment explanation
Indices: 13622381--13622526 Score: 274
Period size: 73 Copynumber: 2.0 Consensus size: 73
13622371 TTCGTTAGCA
13622381 AAACACAAACACAAGACATTTATCATTCTTGCAAATTCGGCTCAATAGCCACACAAAGAGCATGA
1 AAACACAAACACAAGACATTTATCATTCTTGCAAATTCGGCTCAATAGCCACACAAAGAGCATGA
13622446 TTTTAATT
66 TTTTAATT
* *
13622454 AAACACAAACACAAGACATTTATCATTCTTGCAAATTCGGCTCAATAGCGACGCAAAGAGCATGA
1 AAACACAAACACAAGACATTTATCATTCTTGCAAATTCGGCTCAATAGCCACACAAAGAGCATGA
13622519 TTTTAATT
66 TTTTAATT
13622527 TGCTTAAAAC
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.26
Consensus pattern (73 bp):
AAACACAAACACAAGACATTTATCATTCTTGCAAATTCGGCTCAATAGCCACACAAAGAGCATGA
TTTTAATT
Found at i:13622781 original size:13 final size:13
Alignment explanation
Indices: 13622763--13622787 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13622753 GGATGAGCAT
13622763 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
13622776 TTTTTTTTCTTT
1 TTTTTTTTCTTT
13622788 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:13622982 original size:13 final size:13
Alignment explanation
Indices: 13622964--13622988 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13622954 AGGATGAGCA
13622964 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
13622977 TTTTTTTTCTTT
1 TTTTTTTTCTTT
13622989 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:13623092 original size:202 final size:202
Alignment explanation
Indices: 13622691--13623093 Score: 799
Period size: 201 Copynumber: 2.0 Consensus size: 202
13622681 CATGCATGGC
13622691 CGAACCTCTTCAACCTTTCTTCTTCCTTCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGA
1 CGAACCTCTTCAACCTTTCTTCTTCCTTCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGA
13622756 TGAGCATTTTTTTTTCTTTGTTTTTTTTCTTTCTAGTTTCGGCTAAATGAAGATGAGAAAGGATG
66 TGAGCATTTTTTTTTCTTTGTTTTTTTTCTTTCTAGTTTCGGCTAAATGAAGATGAGAAAGGATG
13622821 AACAAAAATTTTCTCCTTTCTTTTCTTTAGCTCACGGCAATGGGGGGGAAACAACTACACACATT
131 AACAAAAATTTTCTCCTTTCTTTTCTTTAGCTCACGGCAATGGGGGGGAAACAACTACACACATT
13622886 TTTTTTT
196 TTTTTTT
13622893 CGAACCTCTTCAACCTTTCTTCTTCCTTCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGA
1 CGAACCTCTTCAACCTTTCTTCTTCCTTCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGA
13622958 TGAGCA-TTTTTTTTCTTTGTTTTTTTTCTTTCTAGTTTCGGCTAAATGAAGATGAGAAAGGATG
66 TGAGCATTTTTTTTTCTTTGTTTTTTTTCTTTCTAGTTTCGGCTAAATGAAGATGAGAAAGGATG
13623022 AACAAAAATTTTCTCCTTTCTTTTCTTTAGCTCACGGCAATGGGGGGGAAACAACTACACACATT
131 AACAAAAATTTTCTCCTTTCTTTTCTTTAGCTCACGGCAATGGGGGGGAAACAACTACACACATT
13623087 TTTTTTT
196 TTTTTTT
13623094 GTATTCATCA
Statistics
Matches: 201, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
201 130 0.65
202 71 0.35
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.39
Consensus pattern (202 bp):
CGAACCTCTTCAACCTTTCTTCTTCCTTCCTCCTTAAAATTTTTGGCCAAGGATGAACCAAAGGA
TGAGCATTTTTTTTTCTTTGTTTTTTTTCTTTCTAGTTTCGGCTAAATGAAGATGAGAAAGGATG
AACAAAAATTTTCTCCTTTCTTTTCTTTAGCTCACGGCAATGGGGGGGAAACAACTACACACATT
TTTTTTT
Found at i:13625010 original size:21 final size:20
Alignment explanation
Indices: 13624986--13625025 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
13624976 ACTTGTTTAA
13624986 CTATCAACAACTATTCAAAAT
1 CTATCAACAA-TATTCAAAAT
* *
13625007 CTATCATCAATCTTCAAAA
1 CTATCAACAATATTCAAAA
13625026 CTCATATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (20 bp):
CTATCAACAATATTCAAAAT
Found at i:13628310 original size:13 final size:13
Alignment explanation
Indices: 13628292--13628317 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13628282 GCTCGACAGG
13628292 GACACGCCCGTGT
1 GACACGCCCGTGT
13628305 GACACGCCCGTGT
1 GACACGCCCGTGT
13628318 TCAATTGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:13637353 original size:104 final size:104
Alignment explanation
Indices: 13637173--13637380 Score: 407
Period size: 104 Copynumber: 2.0 Consensus size: 104
13637163 CTTTTCATAT
13637173 ACACGTATATTATCCTTTAATCGGGCTTACAAGGCCCAAAATATTCATGAGGAATTATTAAATAT
1 ACACGTATATTATCCTTTAATCGGGCTTACAAGGCCCAAAATATTCATGAGGAATTATTAAATAT
13637238 TTACCAATATCTTAGTCTTGTATCATTTACTTACTCAAC
66 TTACCAATATCTTAGTCTTGTATCATTTACTTACTCAAC
*
13637277 ACACGTATATTATCCTTTAATCGGGCTTACAAGGCCCAAAATATTCATGAGGCATTATTAAATAT
1 ACACGTATATTATCCTTTAATCGGGCTTACAAGGCCCAAAATATTCATGAGGAATTATTAAATAT
13637342 TTACCAATATCTTAGTCTTGTATCATTTACTTACTCAAC
66 TTACCAATATCTTAGTCTTGTATCATTTACTTACTCAAC
13637381 TTTACAACCC
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 103 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.37
Consensus pattern (104 bp):
ACACGTATATTATCCTTTAATCGGGCTTACAAGGCCCAAAATATTCATGAGGAATTATTAAATAT
TTACCAATATCTTAGTCTTGTATCATTTACTTACTCAAC
Found at i:13637562 original size:99 final size:99
Alignment explanation
Indices: 13637391--13637587 Score: 367
Period size: 99 Copynumber: 2.0 Consensus size: 99
13637381 TTTACAACCC
* *
13637391 TATACATACCATAGACTCGAAACACTAAGATTTATTTCCGCCGATAGTGTAGACTTGACAATGTG
1 TATACATACCATAGACTCGAAACACTAAGATTTATTTACGCCGATAGCGTAGACTTGACAATGTG
13637456 ATAATATCTCTGACGGCCTCCAACCCGAGCTAAA
66 ATAATATCTCTGACGGCCTCCAACCCGAGCTAAA
*
13637490 TATACATGCCATAGACTCGAAACACTAAGATTTATTTACGCCGATAGCGTAGACTTGACAATGTG
1 TATACATACCATAGACTCGAAACACTAAGATTTATTTACGCCGATAGCGTAGACTTGACAATGTG
13637555 ATAATATCTCTGACGGCCTCCAACCCGAGCTAA
66 ATAATATCTCTGACGGCCTCCAACCCGAGCTAA
13637588 CCTGGCAACC
Statistics
Matches: 95, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
99 95 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (99 bp):
TATACATACCATAGACTCGAAACACTAAGATTTATTTACGCCGATAGCGTAGACTTGACAATGTG
ATAATATCTCTGACGGCCTCCAACCCGAGCTAAA
Found at i:13638848 original size:67 final size:68
Alignment explanation
Indices: 13638741--13638879 Score: 178
Period size: 67 Copynumber: 2.1 Consensus size: 68
13638731 GAGGAAGCGT
* *
13638741 TCTGGCAGCCTCCTGCAATCTGGTGGCCTCGCCACATATAT-T-TGTTCTGGTGACCTCG-TCAC
1 TCTGGCAGCCTCCTGCAATCTGGTGGCCTCGCCACATATATATCTGTTCTAGTGACCTAGCT-AC
13638803 AATA
65 AATA
* * *
13638807 TCTGGCAGCCTCGCTGTAATCTGGTTGG-TTCGCCACATATATATCTGTTCTAGTGGCCTAGCTA
1 TCTGGCAGCCTC-CTGCAATCTGG-TGGCCTCGCCACATATATATCTGTTCTAGTGACCTAGCTA
13638871 CAATA
64 CAATA
13638876 TCTG
1 TCTG
13638880 TATCTAGTGA
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
66 12 0.19
67 23 0.37
68 4 0.06
69 23 0.37
70 1 0.02
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.32
Consensus pattern (68 bp):
TCTGGCAGCCTCCTGCAATCTGGTGGCCTCGCCACATATATATCTGTTCTAGTGACCTAGCTACA
ATA
Found at i:13652723 original size:28 final size:28
Alignment explanation
Indices: 13652646--13652723 Score: 95
Period size: 27 Copynumber: 2.8 Consensus size: 28
13652636 GAGTCATTCG
* * *
13652646 ATATTTTGCACACTAAGTGTCATTCTGA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
13652674 ATA-CTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
13652701 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
13652724 ATTTGATTGC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:13658679 original size:52 final size:52
Alignment explanation
Indices: 13658564--13658742 Score: 208
Period size: 52 Copynumber: 3.5 Consensus size: 52
13658554 GCTAGTGACT
* * *
13658564 CAAGTGTAGTACTTTGTGAAGGCCA-TTT-TG-AGAAGAGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAA-AGATAGCTTTGGACA
13658613 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGACA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGACA
* * * *
13658665 CAAGTGTTGTACTATGGGAAGGCCAATTTGTGAAG-AAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGAC-A
* *
13658716 CAAGGGGTGGTACTATGTGCAGGCCAC
1 CAA-GTGTGGTACTATGTGAAGGCCAC
13658743 CAGGCATCTG
Statistics
Matches: 112, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
49 23 0.21
50 6 0.05
51 23 0.21
52 60 0.54
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.27
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGACA
Found at i:13667095 original size:44 final size:42
Alignment explanation
Indices: 13667035--13667199 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 42
13667025 AATTTTCGCT
13667035 ATTTGATTT-CGTGTAAGACCACGTCTGGGACGTTGGCATCG
1 ATTTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* * * * *
13667076 ATTTGAGATTTATGTGTAAGACCATGTTTGGGACATCGGCATCG
1 ATTT--GATTTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* *
13667120 TATTTGATTT-CGTGTAAGACC-CTGTCTGGGATAG-TGGCATCCAT
1 -ATTTGATTTACGTGTAAGACCAC-GTCTGGGA-CGTTGGCAT-C-G
* *
13667164 ATTTGA-TTACATGTAAAACCACGTCTGGGACGTTGG
1 ATTTGATTTACGTGTAAGACCACGTCTGGGACGTTGG
13667200 TATTGTACGA
Statistics
Matches: 98, Mismatches: 15, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
41 4 0.04
42 25 0.26
43 37 0.38
44 28 0.29
45 4 0.04
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (42 bp):
ATTTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
Found at i:13672868 original size:15 final size:15
Alignment explanation
Indices: 13672848--13672878 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
13672838 AATTATGAAA
13672848 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
13672863 GATATGTTTTGTATT
1 GATATGTTTTGGATT
13672878 G
1 G
13672879 TAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:13677407 original size:41 final size:41
Alignment explanation
Indices: 13677356--13677440 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
13677346 ACATTTGTTA
*
13677356 ATGAGTAGTAAGCATATGTGCAAGTGATGATATGAGAAAAT
1 ATGAGAAGTAAGCATATGTGCAAGTGATGATATGAGAAAAT
13677397 ATGAGAAGTAAGCATATGTGCAAGTGATGATATGAGAAAAT
1 ATGAGAAGTAAGCATATGTGCAAGTGATGATATGAGAAAAT
13677438 ATG
1 ATG
13677441 CTATATGTGC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.42, C:0.05, G:0.27, T:0.26
Consensus pattern (41 bp):
ATGAGAAGTAAGCATATGTGCAAGTGATGATATGAGAAAAT
Found at i:13680732 original size:48 final size:50
Alignment explanation
Indices: 13680670--13680803 Score: 168
Period size: 48 Copynumber: 2.8 Consensus size: 50
13680660 GGAGGAAGTA
* * *
13680670 AGTGGCAGTTTATCTTCAAATTAGTGGTGGCTT-TCCACAAAGTGTT-TT
1 AGTGGCAGTTTATCTGCAAATTAGTGGTGGCTTGTCCACAAAGTATTATC
* * * *
13680718 TGTGGCAGTATATCTGCATA-T-GTGGTGGCTTGTCCACAATGTATTATC
1 AGTGGCAGTTTATCTGCAAATTAGTGGTGGCTTGTCCACAAAGTATTATC
*
13680766 AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCA
1 AGTGGCAGTTTATCTGCAAATTAGTGGTGGCTTGTCCA
13680804 TAAATGGTGG
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
46 10 0.14
47 12 0.17
48 34 0.48
50 15 0.21
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.37
Consensus pattern (50 bp):
AGTGGCAGTTTATCTGCAAATTAGTGGTGGCTTGTCCACAAAGTATTATC
Found at i:13688845 original size:26 final size:28
Alignment explanation
Indices: 13688794--13688849 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
13688784 GGCTACAAAG
13688794 AAAAGAAGAAGAGAAGGTAGATGGAGAGA
1 AAAAGAAGAAGAGAAGGTAGATGGAG-GA
13688823 AAAAGAA-AAGA-AAGG-AGGA-GGAGGA
1 AAAAGAAGAAGAGAAGGTA-GATGGAGGA
13688848 AA
1 AA
13688850 GATGGTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
25 4 0.15
26 5 0.19
27 6 0.23
28 4 0.15
29 7 0.27
ACGTcount: A:0.59, C:0.00, G:0.38, T:0.04
Consensus pattern (28 bp):
AAAAGAAGAAGAGAAGGTAGATGGAGGA
Found at i:13692836 original size:27 final size:26
Alignment explanation
Indices: 13692780--13692836 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
13692770 CAACCTTAAC
* * *
13692780 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTGTACA
* *
13692806 CCTAGGGGTAAATCTGTAAATTGTCCA
1 CCTAGGGGTAAATCAGT-AATTGTACA
13692833 CCTA
1 CCTA
13692837 TAAAGGCATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTGTACA
Found at i:13707242 original size:40 final size:40
Alignment explanation
Indices: 13707196--13707420 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 40
13707186 CTTGCACAAG
* * *
13707196 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
13707236 GCCTTCGGGACTTAGCCCGGATGTAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
13707276 GCCTTCGAGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
13707316 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * *
13707356 GCCTTCGGATCTTAGTCC-GATTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGA-TATAGTCA-CTAGCACAAAT
*
13707397 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
13707421 CATTTGAATA
Statistics
Matches: 157, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.02
40 125 0.80
41 27 0.17
42 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:13707293 original size:80 final size:79
Alignment explanation
Indices: 13707160--13707420 Score: 260
Period size: 80 Copynumber: 3.3 Consensus size: 79
13707150 CTAAAGTAAT
* * * * * * * *
13707160 CTTCGGGATTTAG-CCGAATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTC-GGTCTTAGCCCGGATATAGT
*
13707223 CACTAGCATAAATGC
65 CACTAGCACAAATGC
* * * * *
13707238 CTTCGGGACTTAGCCCGGATGTAATC-GCTAGCACAAATGCCTTCGAGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATAT-AGCAACTAGCACAAATGCCTTCG-GTCTTAGCCCGGATATAG
*
13707302 TCGCTAGCACAAATGC
64 TCACTAGCACAAATGC
* * * *
13707318 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCC-GATTATAG
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGG-TCTTAGCCCGGA-TATAG
*
13707382 TCACCTAGCACAAAAGC
64 TCA-CTAGCACAAATGC
13707399 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
13707421 CATTTGAATA
Statistics
Matches: 150, Mismatches: 25, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
78 12 0.08
79 18 0.12
80 87 0.58
81 33 0.22
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:13717780 original size:46 final size:46
Alignment explanation
Indices: 13717730--13717995 Score: 301
Period size: 46 Copynumber: 5.7 Consensus size: 46
13717720 TGGTTGAGCA
*
13717730 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* * *
13717776 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AGG
*
13717821 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* * *
13717869 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AGG
* * *
13717914 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* *
13717962 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
13717996 GGGGCGGGTT
Statistics
Matches: 186, Mismatches: 20, Indels: 28
0.79 0.09 0.12
Matches are distributed among these distances:
43 12 0.06
45 8 0.04
46 89 0.48
47 58 0.31
48 8 0.04
50 11 0.06
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
Found at i:13717886 original size:93 final size:93
Alignment explanation
Indices: 13717727--13717990 Score: 483
Period size: 93 Copynumber: 2.8 Consensus size: 93
13717717 GGATGGTTGA
13717727 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
13717792 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
13717820 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
13717885 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * *
13717913 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
13717978 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
13717991 ACTTAGGGGC
Statistics
Matches: 166, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 166 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:13720162 original size:21 final size:21
Alignment explanation
Indices: 13720129--13720171 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
13720119 ATCTTCTCGA
*
13720129 TTTGGTCTGTTTTG-TGCCTTT
1 TTTGCTCTGTTTTGCT-CCTTT
*
13720150 TTTGCTCTTTTTTGCTCCTTT
1 TTTGCTCTGTTTTGCTCCTTT
13720171 T
1 T
13720172 AACTCTTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.00, C:0.19, G:0.16, T:0.65
Consensus pattern (21 bp):
TTTGCTCTGTTTTGCTCCTTT
Found at i:13725834 original size:16 final size:18
Alignment explanation
Indices: 13725813--13725845 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
13725803 CCACACAACT
13725813 CCAAAAT-AT-AATAGTA
1 CCAAAATGATCAATAGTA
13725829 CCAAAATGATCAATAGT
1 CCAAAATGATCAATAGT
13725846 GTGATGAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 2 0.13
18 6 0.40
ACGTcount: A:0.52, C:0.15, G:0.09, T:0.24
Consensus pattern (18 bp):
CCAAAATGATCAATAGTA
Found at i:13726550 original size:38 final size:38
Alignment explanation
Indices: 13726423--13726610 Score: 200
Period size: 38 Copynumber: 4.9 Consensus size: 38
13726413 GAATCTAGTC
* * *
13726423 ACCAGCACAAA-CCTGCGGGGCTTTAAGCTCAGATATAAT
1 ACCAGCACAAAGCCTGC-GGGATTTAA-CCCGGATATAAT
* * *
13726462 ACCAGCACTAGGCCTGCGGGATTTAACCCTGAT-TAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
* *
13726499 ACCAGCACAAAGCCTGCGAGATTTAACCCGGATATATT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
* *
13726537 ACCAGCACGAAGCCTGCGGGATTTAACCTGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
* * * *
13726575 TCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACAAAGCCTGCGGG-ATTTAA-CCCGGATA
13726611 CACATCAAAT
Statistics
Matches: 125, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
37 33 0.26
38 58 0.46
39 22 0.18
40 12 0.10
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:13726552 original size:75 final size:77
Alignment explanation
Indices: 13726423--13726610 Score: 231
Period size: 76 Copynumber: 2.5 Consensus size: 77
13726413 GAATCTAGTC
* * * *
13726423 ACCAGCACAAA-CCTGCGGGGCTTTAAGCTCAGATATAATACCAGCACTAGGCCTGCGGGATTTA
1 ACCAGCACAAAGCCTGC-GGGCTTTAAGCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTA
13726487 ACCCT-GAT-TAAT
65 A-CCTGGATATAAT
* * *
13726499 ACCAGCACAAAGCCTGCGAGATTTAA-CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 ACCAGCACAAAGCCTGCGGGCTTTAAGCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
13726563 CCTGGATATAAT
66 CCTGGATATAAT
* * *
13726575 TCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACAAAGCCTGCGGG-CTTTAAGCCCGGATA
13726611 CACATCAAAT
Statistics
Matches: 95, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
74 3 0.03
75 36 0.38
76 38 0.40
77 10 0.11
78 8 0.08
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (77 bp):
ACCAGCACAAAGCCTGCGGGCTTTAAGCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
CCTGGATATAAT
Found at i:13730531 original size:43 final size:40
Alignment explanation
Indices: 13730460--13730582 Score: 104
Period size: 43 Copynumber: 2.9 Consensus size: 40
13730450 CGAAAAGCTC
13730460 ATACAATGCCAATGTCCCAA-ATGTGGTCTTACATGTAATAAA
1 ATACAATGCC-ATGTCCCAACA-G-GGTCTTACATGTAATAAA
* * * *
13730502 ATATCAATGCCACTGTCCCATACAGGGTCTGACACGAAATCAA
1 ATA-CAATGCCA-TGTCCCA-ACAGGGTCTTACATGTAATAAA
* * *
13730545 ATACGATGTCGATGTCCCAGACATGGTCTTACATGTAA
1 ATACAATG-CCATGTCCCA-ACAGGGTCTTACATGTAA
13730583 ATCATAAGTC
Statistics
Matches: 65, Mismatches: 11, Indels: 10
0.76 0.13 0.12
Matches are distributed among these distances:
42 29 0.45
43 33 0.51
44 2 0.03
45 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (40 bp):
ATACAATGCCATGTCCCAACAGGGTCTTACATGTAATAAA
Found at i:13730621 original size:44 final size:44
Alignment explanation
Indices: 13730559--13730673 Score: 169
Period size: 44 Copynumber: 2.6 Consensus size: 44
13730549 GATGTCGATG
*
13730559 TCCCAGACATGGTCTTACATGTAAATCATAAGTCGATGCCAACA
1 TCCCAGACGTGGTCTTACATGTAAATCATAAGTCGATGCCAACA
* * * *
13730603 TCCTAGACGTTGTTTTACATGTAAATCATAAGTCGATGCCAACG
1 TCCCAGACGTGGTCTTACATGTAAATCATAAGTCGATGCCAACA
*
13730647 TCCCAGACGTGGTCTTACACG-AAATCA
1 TCCCAGACGTGGTCTTACATGTAAATCA
13730674 CATATCAAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
43 6 0.10
44 56 0.90
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.27
Consensus pattern (44 bp):
TCCCAGACGTGGTCTTACATGTAAATCATAAGTCGATGCCAACA
Found at i:13730978 original size:15 final size:17
Alignment explanation
Indices: 13730957--13730996 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
13730947 GATCTAAACG
*
13730957 CATTCAAATTTGAC-TT
1 CATTCAAATTTCACATT
13730973 -ATTC-AATTTCACATT
1 CATTCAAATTTCACATT
13730988 CATTCAAAT
1 CATTCAAAT
13730997 CAATCCATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
14 7 0.35
15 6 0.30
16 4 0.20
17 3 0.15
ACGTcount: A:0.35, C:0.20, G:0.03, T:0.42
Consensus pattern (17 bp):
CATTCAAATTTCACATT
Found at i:13749821 original size:30 final size:30
Alignment explanation
Indices: 13749786--13749842 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
13749776 TTTACGAGCC
*
13749786 TAGGGGCAAAAA-TGTAATTTTGACAAAGTT
1 TAGGGG-AAAAATTGTAATATTGACAAAGTT
*
13749816 TAGGGGAAAAATTGTAATATTGCCAAA
1 TAGGGGAAAAATTGTAATATTGACAAA
13749843 ATATGATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.42, C:0.07, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAATTGTAATATTGACAAAGTT
Found at i:13750514 original size:49 final size:50
Alignment explanation
Indices: 13750436--13750681 Score: 289
Period size: 49 Copynumber: 4.9 Consensus size: 50
13750426 ATCTATTGTG
* * **
13750436 AGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACTGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
13750486 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * * **
13750536 CGGTCACGTGTGTAGTAATAAGTGCTGGCTACTACGTCTATCAAATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
13750586 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
13750636 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
13750682 GCCTTGTTTA
Statistics
Matches: 164, Mismatches: 30, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
49 82 0.50
50 46 0.28
51 36 0.22
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:13750614 original size:101 final size:99
Alignment explanation
Indices: 13750486--13750668 Score: 276
Period size: 101 Copynumber: 1.8 Consensus size: 99
13750476 CTGGATAATT
* * *
13750486 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGGTCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT-GGTCACATGTGTAG
*
13750551 TAATAAGTGCTGGCTACTACGTCTATCAAATGGTTA
64 TAATAAGTGCAGGCTACTACGTCTATCAAATGGTTA
* * *
13750587 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCACATGTGTAGTA
*
13750652 CTAAGTGCAGGCTACTA
66 ATAAGTGCAGGCTACTA
13750669 TGCGTACCAG
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
99 29 0.39
100 2 0.03
101 43 0.58
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (99 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCACATGTGTAGTA
ATAAGTGCAGGCTACTACGTCTATCAAATGGTTA
Found at i:13754337 original size:21 final size:21
Alignment explanation
Indices: 13754294--13754337 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
13754284 ACACACTCAG
*
13754294 CTTAATTGAACTATTAATGAA
1 CTTAATTGAACTATTAATAAA
*
13754315 CTTAATTGAGCTAATTAA-AAA
1 CTTAATTGAACT-ATTAATAAA
13754336 CT
1 CT
13754338 ACAAGACCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.36
Consensus pattern (21 bp):
CTTAATTGAACTATTAATAAA
Found at i:13756855 original size:14 final size:16
Alignment explanation
Indices: 13756830--13756862 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
13756820 ATTTTATGTG
13756830 TTTATAATGTGTGA-A
1 TTTATAATGTGTGAGA
13756845 TTTAT-ATGTGTGAGA
1 TTTATAATGTGTGAGA
13756860 TTT
1 TTT
13756863 TTGTGTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.27, C:0.00, G:0.21, T:0.52
Consensus pattern (16 bp):
TTTATAATGTGTGAGA
Found at i:13757682 original size:15 final size:15
Alignment explanation
Indices: 13757662--13757691 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
13757652 GTGAAAATAT
13757662 ATTTGAATAAGTTTA
1 ATTTGAATAAGTTTA
*
13757677 ATTTGAATATGTTTA
1 ATTTGAATAAGTTTA
13757692 GATCAAGAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (15 bp):
ATTTGAATAAGTTTA
Found at i:13760375 original size:42 final size:42
Alignment explanation
Indices: 13760316--13760431 Score: 133
Period size: 42 Copynumber: 2.8 Consensus size: 42
13760306 ATTAGTACCC
* * * *
13760316 ATGCCATGTACCAGACATGGTCTTGCACGAGACCTCACATCG
1 ATGCCATGTCCCAGACATGGTCTTACACGAAACCTCACATCA
* *
13760358 ATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACGAAACCTCACATCA
* * * * *
13760400 ATGTCATATCCTAGATATGGTCTTACATGAAA
1 ATGCCATGTCCCAGACATGGTCTTACACGAAA
13760432 TCACATGCCG
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACACGAAACCTCACATCA
Found at i:13760509 original size:54 final size:54
Alignment explanation
Indices: 13760446--13761308 Score: 1708
Period size: 54 Copynumber: 16.0 Consensus size: 54
13760436 ATGCCGAGGC
13760446 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
13760500 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
13760554 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
13760608 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
13760662 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
13760716 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
13760770 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
13760824 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
13760878 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
13760932 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
13760986 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
13761040 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
13761094 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
13761148 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
13761202 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
* *
13761256 CGATGCCATATCCCAGATATGGTCTTACATTGGCACACATATCAATGCTGATG
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATG
13761309 CCATGTCCTA
Statistics
Matches: 807, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 807 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (54 bp):
CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
Found at i:13761483 original size:90 final size:92
Alignment explanation
Indices: 13761256--13761571 Score: 327
Period size: 96 Copynumber: 3.4 Consensus size: 92
13761246 ATGCTGATGT
*
13761256 CGATGCCATATCCCAGATATGGTCTTACATTGGCACACATATCAATGCTGATGCCATGTCCTAGA
1 CGATGCCATATCCCAGATATGGTCTTACATTGGCACACATATCAA---TGAT-CCATATCCTAGA
** *
13761321 CATGGTCTTACACTGGCTATCATATCAACGC
62 CATGGTCTTACACTGGAAATCACATCAACGC
* * * ** * *
13761352 CGATGCCATGTCCCAGACATGGTCTTACA-CGAAATCTCATATCAATG-T-CATATCCTAGATAT
1 CGATGCCATATCCCAGATATGGTCTTACATTGGCA-CACATATCAATGATCCATATCCTAGACAT
* *
13761414 GGTCTTACA-T-GAAATCACATGCCGAGGC
65 GGTCTTACACTGGAAATCACAT--CAACGC
*
13761442 CGATGCCATATCCCAGATATGGTCTTACATTGGCACACATATCAATGCTGATGCCATGTCCTAGA
1 CGATGCCATATCCCAGATATGGTCTTACATTGGCACACATATCAA---TGAT-CCATATCCTAGA
** *
13761507 CATGGTCTTACACTGGCTATCATATCAACGC
62 CATGGTCTTACACTGGAAATCACATCAACGC
* *
13761538 CGATGCCATGTCCCAGACATGGTCTTACATTGGC
1 CGATGCCATATCCCAGATATGGTCTTACATTGGC
13761572 TCTCATTAAT
Statistics
Matches: 180, Mismatches: 28, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
88 7 0.04
89 1 0.01
90 61 0.34
91 2 0.01
92 1 0.01
93 4 0.02
94 1 0.01
95 2 0.01
96 93 0.52
97 1 0.01
98 7 0.04
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (92 bp):
CGATGCCATATCCCAGATATGGTCTTACATTGGCACACATATCAATGATCCATATCCTAGACATG
GTCTTACACTGGAAATCACATCAACGC
Found at i:13761572 original size:48 final size:48
Alignment explanation
Indices: 13761256--13761577 Score: 270
Period size: 48 Copynumber: 6.8 Consensus size: 48
13761246 ATGCTGATGT
* * * *
13761256 CGATGCCATATCCCAGATATGGTCTTACATTGGC-ACACATATCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTA-TCATATCAACGC
* * *
13761304 TGATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTATCATATCAACGC
* ** *
13761352 CGATGCCATGTCCCAGACATGGTCTTACA-CGAAATCTCATATC-A---
1 CGATGCCATGTCCCAGACATGGTCTTACATTG-GCTATCATATCAACGC
* * * * ** * * *
13761396 --ATGTCATATCCTAGATATGGTCTTACA-T-GAAATCACATGCCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTATCATAT--CAACGC
* * * *
13761442 CGATGCCATATCCCAGATATGGTCTTACATTGGC-ACACATATCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTA-TCATATCAACGC
* * *
13761490 TGATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTATCATATCAACGC
*
13761538 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCAT
1 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTATCAT
13761578 TAATCGTGGT
Statistics
Matches: 220, Mismatches: 40, Indels: 28
0.76 0.14 0.10
Matches are distributed among these distances:
40 6 0.03
42 24 0.11
43 1 0.00
47 2 0.01
48 178 0.81
49 4 0.02
50 5 0.02
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACATTGGCTATCATATCAACGC
Found at i:13775963 original size:43 final size:43
Alignment explanation
Indices: 13775902--13776004 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
13775892 TTGGTTTTCA
13775902 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTCTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTCTGAGATTG
*
13775945 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTCTGAGATTG
13775988 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
13776005 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.22, C:0.17, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTCTGAGATTG
Found at i:13776021 original size:29 final size:29
Alignment explanation
Indices: 13775986--13776059 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
13775976 GTTGTGAGAT
* *
13775986 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
13776015 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
13776044 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
13776060 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:13776493 original size:40 final size:40
Alignment explanation
Indices: 13776370--13776565 Score: 184
Period size: 40 Copynumber: 4.9 Consensus size: 40
13776360 TCGAATGATG
** *
13776370 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
13776410 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
13776450 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
13776490 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * * *
13776530 CCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
13776566 CGTGTATTCG
Statistics
Matches: 131, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 111 0.85
41 19 0.15
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:13776507 original size:80 final size:81
Alignment explanation
Indices: 13776370--13776566 Score: 206
Period size: 80 Copynumber: 2.5 Consensus size: 81
13776360 TCGAATGATG
**
13776370 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
13776432 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
** *
13776450 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAG-TCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGAT-CCGAAGAGCA
* *
13776513 TTCGTGCTAGTGATATA
65 TTCGTGCGAGTGATAAA
* * * * *
13776530 CCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
13776567 GTGTATTCGG
Statistics
Matches: 98, Mismatches: 14, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
79 1 0.01
80 71 0.72
81 20 0.20
82 6 0.06
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:13776757 original size:25 final size:25
Alignment explanation
Indices: 13776728--13776779 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
13776718 TGTGTATTAA
13776728 TGAATGAATAAGA-GCACTATGTATG
1 TGAAT-AATAAGAGGCACTATGTATG
* *
13776753 TGAATAATTAGAGGCACTATGTGTG
1 TGAATAATAAGAGGCACTATGTATG
13776778 TG
1 TG
13776780 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (25 bp):
TGAATAATAAGAGGCACTATGTATG
Found at i:13779657 original size:40 final size:40
Alignment explanation
Indices: 13779602--13779859 Score: 396
Period size: 40 Copynumber: 6.5 Consensus size: 40
13779592 TGGATGATAA
* * *
13779602 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
13779642 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
13779682 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
13779722 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
13779762 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
13779802 CCGGGCTATGTCCCGAAGGCATTGGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
13779842 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
13779860 TACTTGGCTT
Statistics
Matches: 207, Mismatches: 9, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
39 16 0.08
40 191 0.92
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:13788685 original size:20 final size:20
Alignment explanation
Indices: 13788662--13788701 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
13788652 GGAGAAAGTA
13788662 AGAGCCCGGAGGAAAAACTT
1 AGAGCCCGGAGGAAAAACTT
*
13788682 AGAGCCGGGAGGAAAAACTT
1 AGAGCCCGGAGGAAAAACTT
13788702 GATGGAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.17, G:0.33, T:0.10
Consensus pattern (20 bp):
AGAGCCCGGAGGAAAAACTT
Found at i:13794730 original size:13 final size:13
Alignment explanation
Indices: 13794691--13794722 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
13794681 GAGAAAAATG
*
13794691 AATTAACAATGAA
1 AATTAACGATGAA
13794704 AATTAACGATGAA
1 AATTAACGATGAA
13794717 AATTAA
1 AATTAA
13794723 TGGTGAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.25
Consensus pattern (13 bp):
AATTAACGATGAA
Found at i:13800444 original size:65 final size:65
Alignment explanation
Indices: 13800362--13800496 Score: 148
Period size: 66 Copynumber: 2.1 Consensus size: 65
13800352 GTGTGCTAAG
* * * *
13800362 CGTGTGGCCAAGTCAGTA-GCCTCCCTAATTTT-CACACGGCTTGGCACACGGGCGTGTCTTATG
1 CGTGTGGCCAAGTCAGTATGCATCCCTAATTTTGC-CACGGCTAGACACACGGGCGTGTCTAAT-
13800425 GC
64 GC
** * * **
13800427 CGTGTGGTGAAGTCAGTATGTATGCCTTGTTTTGCCACGGCTAGACACACGGGCGTGTCTAATGC
1 CGTGTGGCCAAGTCAGTATGCATCCCTAATTTTGCCACGGCTAGACACACGGGCGTGTCTAATGC
13800492 CGTGT
1 CGTGT
13800497 AAGGCACACG
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
65 23 0.40
66 34 0.59
67 1 0.02
ACGTcount: A:0.17, C:0.25, G:0.30, T:0.28
Consensus pattern (65 bp):
CGTGTGGCCAAGTCAGTATGCATCCCTAATTTTGCCACGGCTAGACACACGGGCGTGTCTAATGC
Found at i:13802190 original size:20 final size:20
Alignment explanation
Indices: 13802161--13802216 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
13802151 AGGGGATTTG
*
13802161 CACTTCGGTGCCTTTGTTTA
1 CACTTCGGTGCCCTTGTTTA
* *
13802181 CACTTTGGTGCCCTTGTTTT
1 CACTTCGGTGCCCTTGTTTA
* *
13802201 CACCTCAGTGCCCTTG
1 CACTTCGGTGCCCTTG
13802217 ATTGCACATT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.09, C:0.30, G:0.20, T:0.41
Consensus pattern (20 bp):
CACTTCGGTGCCCTTGTTTA
Found at i:13819126 original size:37 final size:37
Alignment explanation
Indices: 13819076--13819154 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
13819066 TTATTACAAA
* *
13819076 GTCTTACCAGGACACAA-TCTCCACACGAAGTTATCAG
1 GTCTTACCAGGACAAAATTC-CCACACGAAGTCATCAG
* * *
13819113 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCAGGACAAAATTCCCACACGAAGTCATCAG
13819150 GTCTT
1 GTCTT
13819155 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
37 34 0.94
38 2 0.06
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCAGGACAAAATTCCCACACGAAGTCATCAG
Found at i:13819351 original size:47 final size:47
Alignment explanation
Indices: 13819273--13819579 Score: 461
Period size: 47 Copynumber: 6.5 Consensus size: 47
13819263 CCCTTCGGGA
** * * * * * *
13819273 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
13819320 CCTGTCACATATATACACTTTCACATTCATCACATAGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
13819367 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
13819414 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
13819461 CTTATCACACATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
13819508 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
13819555 CTTATCACACATATACACTATCACA
1 CTTATCACACATATACACTTTCACA
13819580 CATATACACT
Statistics
Matches: 242, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 242 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:13819583 original size:63 final size:63
Alignment explanation
Indices: 13819510--13819632 Score: 237
Period size: 63 Copynumber: 2.0 Consensus size: 63
13819500 CATTAGGCCT
13819510 TATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
1 TATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
*
13819573 TATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
13819633 TACTTTCTTG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (63 bp):
TATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
Found at i:13819596 original size:14 final size:16
Alignment explanation
Indices: 13819557--13819595 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
13819547 CATTAGGCCT
13819557 TATCACACATATACAC
1 TATCACACATATACAC
13819573 TATCACACATATACAC
1 TATCACACATATACAC
*
13819589 TTTCACA
1 TATCACA
13819596 TTCATCACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.41, C:0.31, G:0.00, T:0.28
Consensus pattern (16 bp):
TATCACACATATACAC
Found at i:13822168 original size:55 final size:55
Alignment explanation
Indices: 13822087--13822224 Score: 134
Period size: 55 Copynumber: 2.5 Consensus size: 55
13822077 TGCGACATGG
* * ** * * *
13822087 CCGTGGGCGAACCTACCAAAACAACACGAG-AGTGTGCCACGCCCGTGCCTAGAAA
1 CCGTGGCCGAACCTATCAAATTAACACGAGCA-TGTGACACACCCGTGCCAAGAAA
* * * * *
13822142 CTGTGGCCGAACCTGTCAAATTAACACGGGCATGTGACACACCCGTGCCAAGTAC
1 CCGTGGCCGAACCTATCAAATTAACACGAGCATGTGACACACCCGTGCCAAGAAA
* *
13822197 CCGTGGTCGAACCTATTAAATTAACACG
1 CCGTGGCCGAACCTATCAAATTAACACG
13822225 GACGTGGGCC
Statistics
Matches: 66, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
55 65 0.98
56 1 0.02
ACGTcount: A:0.30, C:0.30, G:0.23, T:0.17
Consensus pattern (55 bp):
CCGTGGCCGAACCTATCAAATTAACACGAGCATGTGACACACCCGTGCCAAGAAA
Found at i:13822792 original size:23 final size:23
Alignment explanation
Indices: 13822748--13822792 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
13822738 TTGTCACACC
* * *
13822748 CATGCCATTACTATGCTCATTCT
1 CATGCCATTACCATACTAATTCT
*
13822771 CATGCTATTACCATACTAATTC
1 CATGCCATTACCATACTAATTC
13822793 CACGAAATTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.27, C:0.29, G:0.07, T:0.38
Consensus pattern (23 bp):
CATGCCATTACCATACTAATTCT
Found at i:13825378 original size:55 final size:55
Alignment explanation
Indices: 13825297--13825434 Score: 134
Period size: 55 Copynumber: 2.5 Consensus size: 55
13825287 TGCGACATGG
* * ** * * *
13825297 CCGTGGGCGAACCTACCAAAACAACACGAG-AGTGTGCCACGCCCGTGCCTAGAAA
1 CCGTGGCCGAACCTATCAAATTAACACGAGCA-TGTGACACACCCGTGCCAAGAAA
* * * * *
13825352 CTGTGGCCGAACCTGTCAAATTAACACGGGCATGTGACACACCCGTGCCAAGTAC
1 CCGTGGCCGAACCTATCAAATTAACACGAGCATGTGACACACCCGTGCCAAGAAA
* *
13825407 CCGTGGTCGAACCTATTAAATTAACACG
1 CCGTGGCCGAACCTATCAAATTAACACG
13825435 GACGTGGGCC
Statistics
Matches: 66, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
55 65 0.98
56 1 0.02
ACGTcount: A:0.30, C:0.30, G:0.23, T:0.17
Consensus pattern (55 bp):
CCGTGGCCGAACCTATCAAATTAACACGAGCATGTGACACACCCGTGCCAAGAAA
Found at i:13826002 original size:23 final size:23
Alignment explanation
Indices: 13825958--13826002 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
13825948 TTGTCACACC
* * *
13825958 CATGCCATTACTATGCTCATTCT
1 CATGCCATTACCATACTAATTCT
*
13825981 CATGCTATTACCATACTAATTC
1 CATGCCATTACCATACTAATTC
13826003 CACGAAATTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.27, C:0.29, G:0.07, T:0.38
Consensus pattern (23 bp):
CATGCCATTACCATACTAATTCT
Found at i:13831859 original size:23 final size:23
Alignment explanation
Indices: 13831833--13831908 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 23
13831823 CGGACTCACC
*
13831833 TTAGCTCATATGAGCTTACC-GT
1 TTAGCTCATATGAGCTTACCAAT
13831855 ATTAGCTCAT-TGGAGCTTACCAAT
1 -TTAGCTCATAT-GAGCTTACCAAT
* *
13831879 TTAGCTCGTAAGAGCTTACC-AT
1 TTAGCTCATATGAGCTTACCAAT
13831901 TTCAGCTC
1 TT-AGCTC
13831909 TTCGGGGCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
22 5 0.11
23 40 0.87
24 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (23 bp):
TTAGCTCATATGAGCTTACCAAT
Found at i:13831921 original size:23 final size:23
Alignment explanation
Indices: 13831890--13831966 Score: 75
Period size: 23 Copynumber: 3.4 Consensus size: 23
13831880 TAGCTCGTAA
*
13831890 GAGCTTACCATTTCAGCTCTTCG
1 GAGCCTACCATTTCAGCTCTTCG
* * *
13831913 GGGCCTACCATTTCAACTCTACG
1 GAGCCTACCATTTCAGCTCTTCG
* * *
13831936 GAGCTTACC-GTTCAGTTCTTCG
1 GAGCCTACCATTTCAGCTCTTCG
*
13831958 GAGCTTACC
1 GAGCCTACC
13831967 GATCATGGCT
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
22 18 0.41
23 26 0.59
ACGTcount: A:0.18, C:0.31, G:0.19, T:0.31
Consensus pattern (23 bp):
GAGCCTACCATTTCAGCTCTTCG
Found at i:13831922 original size:46 final size:46
Alignment explanation
Indices: 13831833--13831922 Score: 103
Period size: 46 Copynumber: 2.0 Consensus size: 46
13831823 CGGACTCACC
* * *
13831833 TTAGCTCATATGAGCTTACCGTATTAGCTCATTGGAGCTTACCAAT
1 TTAGCTCATAAGAGCTTACCATATTAGCTCATTGGAGCCTACCAAT
* *
13831879 TTAGCTCGTAAGAGCTTACCAT-TTCAGCTC-TTCGGGGCCTACCA
1 TTAGCTCATAAGAGCTTACCATATT-AGCTCATT-GGAGCCTACCA
13831923 TTTCAACTCT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
45 4 0.11
46 33 0.89
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (46 bp):
TTAGCTCATAAGAGCTTACCATATTAGCTCATTGGAGCCTACCAAT
Found at i:13835194 original size:20 final size:20
Alignment explanation
Indices: 13835169--13835240 Score: 78
Period size: 20 Copynumber: 3.7 Consensus size: 20
13835159 CAAAATTTAA
13835169 ATTTTGAAATTTTTATAAA-T
1 ATTTTGAAATTTTTA-AAACT
* *
13835189 ATTTTG-AATTTTAAAAATT
1 ATTTTGAAATTTTTAAAACT
* *
13835208 ATTTTGAAAATTTGAAAACT
1 ATTTTGAAATTTTTAAAACT
13835228 ATTTT-AAATTTTT
1 ATTTTGAAATTTTT
13835241 TTGTAACTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
18 3 0.07
19 20 0.45
20 21 0.48
ACGTcount: A:0.40, C:0.01, G:0.06, T:0.53
Consensus pattern (20 bp):
ATTTTGAAATTTTTAAAACT
Found at i:13839185 original size:14 final size:13
Alignment explanation
Indices: 13839141--13839189 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 13
13839131 TTAGAAATAA
*
13839141 TAAATTTATAAACC
1 TAAATTT-TAAAAC
13839155 ATAAATTTTAAAAC
1 -TAAATTTTAAAAC
13839169 TAAATTTTAAAATC
1 TAAATTTTAAAA-C
13839183 TAAATTT
1 TAAATTT
13839190 CAATTCCCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
13 12 0.38
14 13 0.41
15 7 0.22
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (13 bp):
TAAATTTTAAAAC
Found at i:13846362 original size:10 final size:10
Alignment explanation
Indices: 13846347--13846371 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
13846337 AGGTACATCG
13846347 ACTTCTTTCA
1 ACTTCTTTCA
13846357 ACTTCTTTCA
1 ACTTCTTTCA
13846367 ACTTC
1 ACTTC
13846372 AACTGATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.32, G:0.00, T:0.48
Consensus pattern (10 bp):
ACTTCTTTCA
Found at i:13851607 original size:46 final size:46
Alignment explanation
Indices: 13851463--13851679 Score: 176
Period size: 46 Copynumber: 4.7 Consensus size: 46
13851453 CACTTTGTGA
* * * * * ** * *
13851463 GCTAGTGTAAGCCATGTCTAGGACATGTATCGACAACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACGAGT
* * *
13851509 GCCAGTGTAAGACCATGTTTGGGACATAGCATCGGCATTAAGACGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCAAGACGAGT
* *
13851557 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAC-A-T
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACGAGT
*
13851601 AAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-T-ACGA-GATGT
1 --GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACGA-GT
*
13851647 G-TCAGTGTATGACCATGTCTGGGACATGGCATC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATC
13851680 TGTACAGATT
Statistics
Matches: 141, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 13 0.09
45 16 0.11
46 63 0.45
47 25 0.18
48 23 0.16
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACGAGT
Found at i:13858830 original size:30 final size:30
Alignment explanation
Indices: 13858772--13858830 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
13858762 ATTTTCAAGC
* **
13858772 CTAGGGGTAAAATGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTTACCAAAGT
*
13858802 CTAGGGGCAAAATGGTTATTTTACCAAAG
1 CTAGGGGCAAAATGGTCATTTTACCAAAG
13858831 AAGTGAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.31
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTACCAAAGT
Found at i:13859314 original size:46 final size:47
Alignment explanation
Indices: 13859218--13859319 Score: 120
Period size: 46 Copynumber: 2.2 Consensus size: 47
13859208 TATGAGAGCC
* * *
13859218 AGTGTAAGAATATGTCTGGGACATGGTATCGGCATTGAGACGAGTTCT
1 AGTGTAAGAACATGTCTGGGACATGGCATCGGCATCGAGACGAG-TCT
*
13859266 AGTGTAA-AACATGTCTGGGACAT-GCATCGGCCTCGAGACGTAAG-CT
1 AGTGTAAGAACATGTCTGGGACATGGCATCGGCATCGAGACG--AGTCT
13859312 AGTGTAAG
1 AGTGTAAG
13859320 TGTAACATCC
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
46 23 0.49
47 15 0.32
48 9 0.19
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.25
Consensus pattern (47 bp):
AGTGTAAGAACATGTCTGGGACATGGCATCGGCATCGAGACGAGTCT
Found at i:13868288 original size:53 final size:53
Alignment explanation
Indices: 13868220--13868324 Score: 165
Period size: 53 Copynumber: 2.0 Consensus size: 53
13868210 TATTTTCCAT
* * * *
13868220 TCGGTACGGTGGAGGTGAGTCATCCCAAGTTTGGCACTTTTAAGGTAAACAAC
1 TCGGTACAGTCGAGGTAAGTCATCCCAAGTTCGGCACTTTTAAGGTAAACAAC
*
13868273 TCGGTACAGTCGAGGTAAGTCATCCCAAGTTCGGTACTTTTAAGGTAAACAA
1 TCGGTACAGTCGAGGTAAGTCATCCCAAGTTCGGCACTTTTAAGGTAAACAA
13868325 TACTAGCCTA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (53 bp):
TCGGTACAGTCGAGGTAAGTCATCCCAAGTTCGGCACTTTTAAGGTAAACAAC
Found at i:13871157 original size:30 final size:30
Alignment explanation
Indices: 13871123--13871183 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
13871113 TCCTTAACTC
13871123 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
13871153 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
13871183 A
1 A
13871184 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:13873768 original size:39 final size:39
Alignment explanation
Indices: 13873404--13873750 Score: 453
Period size: 39 Copynumber: 8.9 Consensus size: 39
13873394 ATTTGATGTA
* *
13873404 TATCCGGACTTAAGGTCCGCAGGCTTTGTACTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
13873443 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
13873482 TATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* ** * * * * *
13873521 TATCCGGGCTTAAAGACCCACAGGCTTCGTACTGGTACTA
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
13873561 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* *
13873600 TATCCGAACTTAAGGT-CGCAGGCTCCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* **
13873638 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * * *
13873678 TATCCGTACTTAAGATCCGCAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * *
13873717 TATCCAGACTTAAGGTCCGCAAGCTTCGTACTGG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGG
13873751 TACTATAATC
Statistics
Matches: 267, Mismatches: 38, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
38 30 0.11
39 177 0.66
40 60 0.22
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
Found at i:13879511 original size:14 final size:14
Alignment explanation
Indices: 13879492--13879519 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
13879482 TTTTATTATG
13879492 AGATATTTGAATTC
1 AGATATTTGAATTC
13879506 AGATATTTGAATTC
1 AGATATTTGAATTC
13879520 TTATAATACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (14 bp):
AGATATTTGAATTC
Found at i:13895991 original size:40 final size:40
Alignment explanation
Indices: 13895947--13896174 Score: 318
Period size: 40 Copynumber: 5.7 Consensus size: 40
13895937 GCTACTTGCT
*
13895947 CAAATGCCTTCGGGACTTAGCCCAATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
* *
13895987 CAAATGCCTTCGAGACTTAGCCCGGA-TATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCC-GATTATAGTAACTCGCA
* *
13896027 CAAATGCCTTCGGGAATTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
* *
13896067 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
* * *
13896107 CAAATGCCTTCGGG-CTTAGCCCAGAAT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTATAGTAACTCGCA
*
13896146 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGATTAT
13896175 CATCCGAATA
Statistics
Matches: 167, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.20
40 132 0.79
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
Found at i:13901288 original size:27 final size:27
Alignment explanation
Indices: 13901258--13901435 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
13901248 ATATTGAGCC
* * * *
13901258 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
13901285 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
13901312 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
13901340 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
13901367 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
13901394 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
13901421 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
13901436 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:13901397 original size:82 final size:81
Alignment explanation
Indices: 13901279--13901434 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
13901269 TGCTATATAA
* * *
13901279 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCA-AATCGCA
13901344 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
13901361 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
13901425 CACTTAGTGC
65 CACTTAGTGC
13901435 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:13907792 original size:40 final size:40
Alignment explanation
Indices: 13907748--13907918 Score: 218
Period size: 40 Copynumber: 4.3 Consensus size: 40
13907738 GCTACTTGCT
** * **
13907748 CAAATGCCTTCAAGACTTAGCCCG-GTTATAGTAACTCCCA
1 CAAATGCCTTCGGGACTTAGCCCGAATT-TAGTAACTAGCA
**
13907788 CAAATGCCTTCGGGACTTAGCCCGAATTTAGTCTCTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATTTAGTAACTAGCA
**
13907828 CAAATGCCTTCGGGACTTAGCCCGAATTTAGTCTCTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATTTAGTAACTAGCA
* * *
13907868 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATTTAGTAACTAGCA
13907908 CAAATGCCTTC
1 CAAATGCCTTC
13907919 NNNNNNNNNN
Statistics
Matches: 118, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 116 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGAATTTAGTAACTAGCA
Found at i:13917592 original size:14 final size:14
Alignment explanation
Indices: 13917568--13917611 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
13917558 CAAAATGTAC
13917568 TATATAATTAAATAA
1 TATA-AATTAAATAA
13917583 TATAAATTAAATAA
1 TATAAATTAAATAA
* *
13917597 AATAAATTAATTAA
1 TATAAATTAAATAA
13917611 T
1 T
13917612 TGTTTACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 22 0.85
15 4 0.15
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
TATAAATTAAATAA
Found at i:13920836 original size:22 final size:25
Alignment explanation
Indices: 13920811--13920857 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
13920801 TTAATCTCGT
13920811 TTTTTCA-AA-ATAA-TTTTTTTTA
1 TTTTTCAGAAGATAACTTTTTTTTA
*
13920833 TTTTTCAGAAGTTAACTTTTTTTTA
1 TTTTTCAGAAGATAACTTTTTTTTA
13920858 CTTTCTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
23 2 0.10
24 3 0.14
25 9 0.43
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (25 bp):
TTTTTCAGAAGATAACTTTTTTTTA
Found at i:13920896 original size:35 final size:34
Alignment explanation
Indices: 13920850--13920915 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
13920840 GAAGTTAACT
13920850 TTTTTTTACTTTCTTTTTTTTTAAAATTTTATAGC
1 TTTTTTTACTTTC-TTTTTTTTAAAATTTTATAGC
13920885 TTTTTTTACTTTCTTTTTTTTAAAATTTTAT
1 TTTTTTTACTTTCTTTTTTTTAAAATTTTAT
13920916 TTAAACTCAG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 18 0.58
35 13 0.42
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.71
Consensus pattern (34 bp):
TTTTTTTACTTTCTTTTTTTTAAAATTTTATAGC
Found at i:13943538 original size:24 final size:24
Alignment explanation
Indices: 13943524--13943617 Score: 143
Period size: 24 Copynumber: 3.9 Consensus size: 24
13943514 TATTGACATT
13943524 CAAATCCGCACACATAGTGCCATA
1 CAAATCCGCACACATAGTGCCATA
13943548 CAAATCCGCACACATAGTGCCATA
1 CAAATCCGCACACATAGTGCCATA
* *
13943572 CAAATTCGCACACATAGTGCCATT
1 CAAATCCGCACACATAGTGCCATA
* * *
13943596 CAAATTCGCGCACGTAGTGCCA
1 CAAATCCGCACACATAGTGCCA
13943618 AAGTCATTTC
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 66 1.00
ACGTcount: A:0.34, C:0.32, G:0.15, T:0.19
Consensus pattern (24 bp):
CAAATCCGCACACATAGTGCCATA
Found at i:13943541 original size:48 final size:48
Alignment explanation
Indices: 13943484--13943600 Score: 135
Period size: 48 Copynumber: 2.4 Consensus size: 48
13943474 TGTTAACCCA
* ** * * * *
13943484 CACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCG
1 CACACATAGTGCCATACAAATCCACACACATAGTGACATACAAATCCG
* * *
13943532 CACACATAGTGCCATACAAATCCGCACACATAGTGCCATACAAATTCG
1 CACACATAGTGCCATACAAATCCACACACATAGTGACATACAAATCCG
*
13943580 CACACATAGTGCCATTCAAAT
1 CACACATAGTGCCATACAAAT
13943601 TCGCGCACGT
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 58 1.00
ACGTcount: A:0.37, C:0.28, G:0.11, T:0.24
Consensus pattern (48 bp):
CACACATAGTGCCATACAAATCCACACACATAGTGACATACAAATCCG
Found at i:13943587 original size:72 final size:72
Alignment explanation
Indices: 13943484--13943617 Score: 178
Period size: 72 Copynumber: 1.9 Consensus size: 72
13943474 TGTTAACCCA
* ** * *
13943484 CACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATAC
1 CACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAATCCGCACACATAGTGCCATAC
13943549 AAATCCG
66 AAATCCG
* * * * *
13943556 CACACATAGTGCCATACAAATTCGCACACATAGTGCCATTCAAATTCGCGCACGTAGTGCCA
1 CACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAATCCGCACACATAGTGCCA
13943618 AAGTCATTTC
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
72 52 1.00
ACGTcount: A:0.34, C:0.29, G:0.13, T:0.23
Consensus pattern (72 bp):
CACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAATCCGCACACATAGTGCCATAC
AAATCCG
Found at i:13944658 original size:19 final size:19
Alignment explanation
Indices: 13944634--13944682 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
13944624 ACTCTCTCTC
*
13944634 TCTTTTCTTATTTTATTCA
1 TCTTTTCTTATTTAATTCA
*
13944653 TCTTTTCCTA-TTAATTCA
1 TCTTTTCTTATTTAATTCA
13944671 T-TTTT-TTATTTA
1 TCTTTTCTTATTTA
13944683 GATTATTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 2 0.08
17 7 0.27
18 8 0.31
19 9 0.35
ACGTcount: A:0.18, C:0.14, G:0.00, T:0.67
Consensus pattern (19 bp):
TCTTTTCTTATTTAATTCA
Found at i:13955077 original size:13 final size:13
Alignment explanation
Indices: 13955059--13955083 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13955049 TGTGGGTGCA
13955059 CACGGTCGTGTCG
1 CACGGTCGTGTCG
13955072 CACGGTCGTGTC
1 CACGGTCGTGTC
13955084 TAGCGTTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.36, T:0.24
Consensus pattern (13 bp):
CACGGTCGTGTCG
Found at i:13961448 original size:41 final size:40
Alignment explanation
Indices: 13961391--13961468 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 40
13961381 ATACCACTCA
*
13961391 TTCATCATGTGGAGGAAGGCTTCTCTAGCCGCTCTTCNTCG
1 TTCATCATGCGGAGGAAGGCTTCTCTAGCCGCTCTTC-TCG
13961432 TTCATCATGCGGAGGAAGGCTTCTCTAGCCGCTCTTC
1 TTCATCATGCGGAGGAAGGCTTCTCTAGCCGCTCTTC
13961469 CCTGACTAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.15, C:0.28, G:0.24, T:0.31
Consensus pattern (40 bp):
TTCATCATGCGGAGGAAGGCTTCTCTAGCCGCTCTTCTCG
Found at i:13963405 original size:37 final size:37
Alignment explanation
Indices: 13963362--13963440 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
13963352 TTATTACGAA
* * *
13963362 GTCTTACCCGGAC-ATAATCTCCACACGAAGTTATTGG
1 GTCTTACCCGGACAAT-ATCCCCACACGAAGTCATCGG
*
13963399 GTCTTACCCGGACAATATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAATATCCCCACACGAAGTCATCGG
13963436 GTCTT
1 GTCTT
13963441 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAATATCCCCACACGAAGTCATCGG
Found at i:13963684 original size:49 final size:49
Alignment explanation
Indices: 13963559--13964032 Score: 843
Period size: 49 Copynumber: 9.8 Consensus size: 49
13963549 CCCTTCGGGA
* * * * *
13963559 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
13963606 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13963653 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13963702 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13963751 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13963800 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13963849 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13963898 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13963947 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
13963996 CTTATCAC--ATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATATACACTTTCACATTCATCACATCG
13964033 AATCCTAAAT
Statistics
Matches: 414, Mismatches: 9, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
46 1 0.00
47 72 0.17
49 341 0.82
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:13968096 original size:50 final size:50
Alignment explanation
Indices: 13968018--13968212 Score: 275
Period size: 50 Copynumber: 3.9 Consensus size: 50
13968008 TGATGCTAGG
* *
13968018 GAGATATGAAAGCTAGTGTAAGAACATGTCTGGGACATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
*
13968068 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCAC-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTC
* * * * *
13968118 GATAGATGAGAGCCATTGTAAGACCATGTCTGGGATATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * *
13968168 GATATACGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
13968213 ACTTTGATGG
Statistics
Matches: 128, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
49 1 0.01
50 126 0.98
51 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
Found at i:13981657 original size:25 final size:26
Alignment explanation
Indices: 13981629--13981682 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
13981619 TTTATCTTTG
*
13981629 TTTATCTT-CTTTAAGTACT-TTTTAT
1 TTTATCTTCCTTTAA-TACTATTTCAT
13981654 TTTATCTTCCTTTAATACTATTTCAT
1 TTTATCTTCCTTTAATACTATTTCAT
13981680 TTT
1 TTT
13981683 TAGGTTTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 12 0.46
26 14 0.54
ACGTcount: A:0.20, C:0.15, G:0.02, T:0.63
Consensus pattern (26 bp):
TTTATCTTCCTTTAATACTATTTCAT
Found at i:13987444 original size:20 final size:20
Alignment explanation
Indices: 13987419--13987458 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
13987409 TTAGCTTGTC
*
13987419 AACAAGTCAAAGTCAAACAT
1 AACAAGTCAAAGCCAAACAT
13987439 AACAAGTCAAAGCCAAACAT
1 AACAAGTCAAAGCCAAACAT
13987459 CAAATGCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.55, C:0.23, G:0.10, T:0.12
Consensus pattern (20 bp):
AACAAGTCAAAGCCAAACAT
Found at i:13988949 original size:17 final size:19
Alignment explanation
Indices: 13988927--13988961 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
13988917 TTTAACTTAA
13988927 GGTTAA-AAAGG-TAATTC
1 GGTTAATAAAGGTTAATTC
13988944 GGTTAATAAAGGTTAATT
1 GGTTAATAAAGGTTAATT
13988962 ATAATAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 5 0.31
19 5 0.31
ACGTcount: A:0.40, C:0.03, G:0.23, T:0.34
Consensus pattern (19 bp):
GGTTAATAAAGGTTAATTC
Found at i:13992262 original size:48 final size:48
Alignment explanation
Indices: 13992203--13992473 Score: 210
Period size: 48 Copynumber: 5.6 Consensus size: 48
13992193 TATGTGTGCT
* * *
13992203 AGTGTAAGACCATGTCAGGGATATGACATTGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCACATTATGAGAGCC
* * * ** *
13992251 AGTTTAAGACCATGTCTGGGACATGGCA-TCGACATTGTTATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCA-CATTATGAGAGCC
* * * * *
13992299 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGCGATCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCACATTATGAGAGCC
* * ** * *
13992347 AGTGTAAGACCATGT-TCGGAACATGGCATCGG-CATTGTTAT-ATGTGTC
1 AGTGTAAGACCATGTCT-GGGACATGGCATTGGCCA-CATTATGA-GAGCC
** *
13992395 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CACCGATATATGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCA-C-AT-TATGAGAGCC
* * *
13992445 GGGGTAAGACCATGTCCGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
13992474 CAGCATTTTA
Statistics
Matches: 176, Mismatches: 38, Indels: 16
0.77 0.17 0.07
Matches are distributed among these distances:
47 6 0.03
48 132 0.75
49 4 0.02
50 33 0.19
51 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTGGCCACATTATGAGAGCC
Found at i:13992371 original size:96 final size:96
Alignment explanation
Indices: 13992200--13992474 Score: 306
Period size: 96 Copynumber: 2.8 Consensus size: 96
13992190 TGATATGTGT
* * * * * *
13992200 GCTAGTGTAAGACCATGTCAGGGATATGACATTGGCCACATTATGAGAGCCAGTTTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATG
*
13992265 TCTGGGACATGGCATCGACATTGTTATGA-GA
66 TCTGGAACATGGCATCGACATTGTTAT-ATGA
* * *
13992296 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGCGATCCAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATG
* *
13992361 T-TCGGAACATGGCATCGGCATTGTTATATGT
66 TCT-GGAACATGGCATCGACATTGTTATATGA
* * * *
13992392 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CACCGATATATGAGAGTCGGGGTAAGAC
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-C-A-ATATGAGAGCCAGTGTAAGAC
* *
13992455 CATGTCCGGGACATGGCATC
62 CATGTCTGGAACATGGCATC
13992475 AGCATTTTAC
Statistics
Matches: 151, Mismatches: 21, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
95 4 0.03
96 113 0.75
97 1 0.01
98 33 0.22
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATG
TCTGGAACATGGCATCGACATTGTTATATGA
Found at i:13997817 original size:21 final size:21
Alignment explanation
Indices: 13997767--13997817 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
13997757 TTTGCTTCTC
13997767 TGTTTCTATTTCATTTCTTTTA
1 TGTTT-TATTTCATTTCTTTTA
*
13997789 T-TTATTATTTTATTTAC-TTTA
1 TGTT-TTATTTCATTT-CTTTTA
13997810 TGTTTTAT
1 TGTTTTAT
13997818 ATAATATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.18, C:0.08, G:0.04, T:0.71
Consensus pattern (21 bp):
TGTTTTATTTCATTTCTTTTA
Found at i:13997830 original size:8 final size:8
Alignment explanation
Indices: 13997818--13997851 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
13997808 TATGTTTTAT
*
13997818 ATAATATT
1 ATAATATA
13997826 ATAATATA
1 ATAATATA
13997834 ATAATATA
1 ATAATATA
13997842 ATAATATA
1 ATAATATA
13997850 AT
1 AT
13997852 TTATTTACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
ATAATATA
Found at i:13999986 original size:116 final size:116
Alignment explanation
Indices: 13999782--14000015 Score: 468
Period size: 116 Copynumber: 2.0 Consensus size: 116
13999772 AGTTTCAAAA
13999782 CTCGAAACCCAATTCCGTAAAATTTTCCTGAAACTAGACTCATATATATATTTACTAATTGTTTT
1 CTCGAAACCCAATTCCGTAAAATTTTCCTGAAACTAGACTCATATATATATTTACTAATTGTTTT
13999847 CTAGAAATTTTGGTCAAGCCAATTAGAACAGTTTATTAGTTAAAATCTCCC
66 CTAGAAATTTTGGTCAAGCCAATTAGAACAGTTTATTAGTTAAAATCTCCC
13999898 CTCGAAACCCAATTCCGTAAAATTTTCCTGAAACTAGACTCATATATATATTTACTAATTGTTTT
1 CTCGAAACCCAATTCCGTAAAATTTTCCTGAAACTAGACTCATATATATATTTACTAATTGTTTT
13999963 CTAGAAATTTTGGTCAAGCCAATTAGAACAGTTTATTAGTTAAAATCTCCC
66 CTAGAAATTTTGGTCAAGCCAATTAGAACAGTTTATTAGTTAAAATCTCCC
14000014 CT
1 CT
14000016 ATTTCAGGGT
Statistics
Matches: 118, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
116 118 1.00
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.36
Consensus pattern (116 bp):
CTCGAAACCCAATTCCGTAAAATTTTCCTGAAACTAGACTCATATATATATTTACTAATTGTTTT
CTAGAAATTTTGGTCAAGCCAATTAGAACAGTTTATTAGTTAAAATCTCCC
Found at i:14001106 original size:46 final size:45
Alignment explanation
Indices: 14001039--14001204 Score: 183
Period size: 46 Copynumber: 3.6 Consensus size: 45
14001029 TGTAACCCGC
14001039 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGC-TTCGCAT
* * *
14001085 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GA-GCTTCGCAT
* *** *
14001131 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGTA-CATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCG-AGC-TTCGCAT
*
14001178 CCATAAGTGAACTCGAACTCAACTCAA
1 CCATAAGTGAACTCGGACTCAACTCAA
14001205 TGATTTCGGA
Statistics
Matches: 98, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
45 1 0.01
46 60 0.61
47 35 0.36
48 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCTTCGCAT
Found at i:14001158 original size:93 final size:93
Alignment explanation
Indices: 14001047--14001218 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
14001037 GCCCATAAGT
* *
14001047 GAACTCGGACTCAACTCAACGAGCTCG-AGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGTA-CATTCGCATCCATAAGTGAACTCGAACTCAACTCA
14001111 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
14001140 GAACTCGGACTCAACTCAACGAGTTCGTACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGTACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
* **
14001205 TGATTTCGGATGCC
66 CGAGCTCGGATGCC
14001219 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGTACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:14003646 original size:30 final size:30
Alignment explanation
Indices: 14003603--14003691 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
14003593 CAAATATAAC
14003603 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
14003632 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
14003662 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
14003692 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:14003651 original size:15 final size:15
Alignment explanation
Indices: 14003603--14003682 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
14003593 CAAATATAAC
*
14003603 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
14003617 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
14003632 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
14003647 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
14003662 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
14003677 AAGAAA
1 AAGAAA
14003683 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:14003691 original size:15 final size:15
Alignment explanation
Indices: 14003614--14003691 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
14003604 AGAAAACCGA
14003614 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
14003629 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
14003643 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
14003658 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
14003674 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
14003689 ATA
1 ATA
14003692 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:14006948 original size:281 final size:281
Alignment explanation
Indices: 14006445--14006959 Score: 985
Period size: 281 Copynumber: 1.8 Consensus size: 281
14006435 ACCATATTGT
* *
14006445 TGTTATATCGAGTTTTCAACCCGAGGATTAAGTACATACCTGTTCAAAGTATCCATTTCTCAACA
1 TGTTATATCGAGTTTTCAACCCGAGGATTAAGTACATACCTGTTCAAAATATCCATTTCACAACA
14006510 CTTAACAATACGTCCCTTTCATCTCGAGTATTCCTCCATTTGAGTAGAATTTTACCCGTTGAACA
66 CTTAACAATACGTCCCTTTCATCTCGAGTATTCCTCCATTTGAGTAGAATTTTACCCGTTGAACA
14006575 CATCGGAATATAATTCGGATATATGGAAAGTTTGCACATAAGTGCCATATATGTAGCCAAGCTAC
131 CATCGGAATATAATTCGGATATATGGAAAGTTTGCACATAAGTGCCATATATGTAGCCAAGCTAC
14006640 CATGTACCCCGCCCATAAGTGAACTCGGACTCAACTCAATGATTTCGGATGCCCAAATATCCTAG
196 CATGTACCCCGCCCATAAGTGAACTCGGACTCAACTCAATGATTTCGGATGCCCAAATATCCTAG
14006705 TGACATGTCACTTGTATCTGG
261 TGACATGTCACTTGTATCTGG
*
14006726 TGTTATATCGAGTTTTCAACCCGAGGGTTAAGTACATACCTGTTCAAAATATCCATTTCACAACA
1 TGTTATATCGAGTTTTCAACCCGAGGATTAAGTACATACCTGTTCAAAATATCCATTTCACAACA
* *
14006791 CTTACCAATACGTCCCTTTCATCTTGAGTATTCCTCCATTTGAGTAGAATTTTACCCGTTGAACA
66 CTTAACAATACGTCCCTTTCATCTCGAGTATTCCTCCATTTGAGTAGAATTTTACCCGTTGAACA
14006856 CATCGGAATATAATTCGGATATATGGAAAGTTTGCACATAAGTGCCATATATGTAGCCAAGCTAC
131 CATCGGAATATAATTCGGATATATGGAAAGTTTGCACATAAGTGCCATATATGTAGCCAAGCTAC
14006921 CATGTACCCCGCCCATAAGTGAACTCGGACTCAACTCAA
196 CATGTACCCCGCCCATAAGTGAACTCGGACTCAACTCAA
14006960 CGAGCTCGGG
Statistics
Matches: 229, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
281 229 1.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (281 bp):
TGTTATATCGAGTTTTCAACCCGAGGATTAAGTACATACCTGTTCAAAATATCCATTTCACAACA
CTTAACAATACGTCCCTTTCATCTCGAGTATTCCTCCATTTGAGTAGAATTTTACCCGTTGAACA
CATCGGAATATAATTCGGATATATGGAAAGTTTGCACATAAGTGCCATATATGTAGCCAAGCTAC
CATGTACCCCGCCCATAAGTGAACTCGGACTCAACTCAATGATTTCGGATGCCCAAATATCCTAG
TGACATGTCACTTGTATCTGG
Found at i:14007856 original size:93 final size:93
Alignment explanation
Indices: 14006941--14007842 Score: 1759
Period size: 93 Copynumber: 9.7 Consensus size: 93
14006931 GCCCATAAGT
* * * *
14006941 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14007006 CGAGCTCAGATGCCTACTTACATCTCTC
66 CGAGCTCAGATGCCTACTTACATCTCTC
14007034 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14007099 CGAGCTCAGATGCCTACTTACATCTCTC
66 CGAGCTCAGATGCCTACTTACATCTCTC
14007127 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14007192 CGAGCTCAGATGCCTACTTACATCTCTC
66 CGAGCTCAGATGCCTACTTACATCTCTC
14007220 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14007285 CGAGCTCAGATGCCTACTTACATCTCTC
66 CGAGCTCAGATGCCTACTTACATCTCTC
14007313 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14007378 CGAGCTCAGATGCCTACTTACATCTCTC
66 CGAGCTCAGATGCCTACTTACATCTCTC
14007406 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14007471 CGAGCTCAGATGCCTACTTACATCTCTC
66 CGAGCTCAGATGCCTACTTACATCTCTC
14007499 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14007564 CGAGCTCAGATGCCTACTTACATCTCTC
66 CGAGCTCAGATGCCTACTTACATCTCTC
14007592 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14007657 CGAGCTCAGATGCCTACTTACATCTCTC
66 CGAGCTCAGATGCCTACTTACATCTCTC
14007685 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14007750 CGAGCTCAGATGCCTACTTACATCTCTC
66 CGAGCTCAGATGCCTACTTACATCTCTC
*
14007778 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14007843 TGATTTCGGA
Statistics
Matches: 804, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 804 1.00
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCAGATGCCTACTTACATCTCTC
Done.