Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 47 of 205
Found at i:14018001 original size:40 final size:40
Alignment explanation
Indices: 14017903--14018032 Score: 192
Period size: 40 Copynumber: 3.3 Consensus size: 40
14017893 TCCTCGTTCA
* * *
14017903 AATGCCTTCGGGACATAGCCCGG-TTTCAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTT-AATAACTCGCACG
*
14017942 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
14017982 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
14018022 AATGCCTTCGG
1 AATGCCTTCGG
14018033 ATCTTAGTCC
Statistics
Matches: 83, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 31 0.37
40 52 0.63
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:14025971 original size:40 final size:40
Alignment explanation
Indices: 14025913--14026148 Score: 222
Period size: 40 Copynumber: 5.9 Consensus size: 40
14025903 ATATCCCCTA
* * * *
14025913 AATGCACATACATACCCCTGTTTGTAGTTTGGTACCCTTG
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTG
* * *
14025953 AATGCACATACGTGCCCCTGTTTGTATTTCGGTTCCCTCG
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTG
* ** * *
14025993 AATGCACATACGCGCCCCTACTTGTACTTCGGTACCCCTA
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTG
* * * * * **
14026033 AACGCACATACATTCCCTTCTTTGTACTTCAATACCCTTG
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTG
* * *
14026073 AATGTACATACGTGCCCCTGTATGTACTTCAGTACTCC-TG
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTAC-CCTTG
* * * *
14026113 CATGCACATACGTGCCCCTATTTATATTTCGGTACC
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACC
14026149 TCTAATCGCG
Statistics
Matches: 155, Mismatches: 40, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.98
41 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.33
Consensus pattern (40 bp):
AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTG
Found at i:14026097 original size:20 final size:20
Alignment explanation
Indices: 14026074--14026131 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
14026064 ATACCCTTGA
*
14026074 ATGTACATACGTGCCCCTGT
1 ATGTACATACGTGCCCCTGC
* * *
14026094 ATGTAC-TTCAGTACTCCTGC
1 ATGTACATAC-GTGCCCCTGC
*
14026114 ATGCACATACGTGCCCCT
1 ATGTACATACGTGCCCCT
14026132 ATTTATATTT
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
19 2 0.07
20 24 0.86
21 2 0.07
ACGTcount: A:0.21, C:0.33, G:0.17, T:0.29
Consensus pattern (20 bp):
ATGTACATACGTGCCCCTGC
Found at i:14026120 original size:120 final size:120
Alignment explanation
Indices: 14025907--14026153 Score: 307
Period size: 120 Copynumber: 2.1 Consensus size: 120
14025897 AAGAAAATAT
* * * ***
14025907 CCCCTAAATGCACATACATACCCCTGTTTGTAGTTTGGTACCCTTGAATGCACATACGTGCCCCT
1 CCCCTAAACGCACATACATACCCCTCTTTGTACTTCAATACCCTTGAATGCACATACGTGCCCCT
* * * * *
14025972 GTTTGTATTTCGGTTCCCTCGAATGCACATACGCGCCCCTACTTGTACTTCGGTA
66 GTATGTACTTCAGTACCCTCGAATGCACATACGCGCCCCTACTTATACTTCGGTA
* * *
14026027 CCCCTAAACGCACATACATTCCCTTCTTTGTACTTCAATACCCTTGAATGTACATACGTGCCCCT
1 CCCCTAAACGCACATACATACCCCTCTTTGTACTTCAATACCCTTGAATGCACATACGTGCCCCT
* * * *
14026092 GTATGTACTTCAGTACTCCT-GCATGCACATACGTGCCCCTATTTATATTTCGGTA
66 GTATGTACTTCAGTAC-CCTCGAATGCACATACGCGCCCCTACTTATACTTCGGTA
*
14026147 CCTCTAA
1 CCCCTAA
14026154 TCGCGCATTC
Statistics
Matches: 107, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
120 104 0.97
121 3 0.03
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.32
Consensus pattern (120 bp):
CCCCTAAACGCACATACATACCCCTCTTTGTACTTCAATACCCTTGAATGCACATACGTGCCCCT
GTATGTACTTCAGTACCCTCGAATGCACATACGCGCCCCTACTTATACTTCGGTA
Found at i:14028705 original size:34 final size:34
Alignment explanation
Indices: 14028639--14028705 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
14028629 CCGGAAAATA
* *
14028639 TTAAGTTCTGTTTGAATGATGAATTTTAATGGAG
1 TTAAGTTCCGTTTGAATGATGAATTTCAATGGAG
*
14028673 TTAAGTTCCGTTTGAATGATGAATTTCGATGGA
1 TTAAGTTCCGTTTGAATGATGAATTTCAATGGA
14028706 TATATGTGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.28, C:0.06, G:0.24, T:0.42
Consensus pattern (34 bp):
TTAAGTTCCGTTTGAATGATGAATTTCAATGGAG
Found at i:14030254 original size:38 final size:38
Alignment explanation
Indices: 14030157--14030306 Score: 167
Period size: 38 Copynumber: 3.9 Consensus size: 38
14030147 TGAGGTATAA
* * * * *
14030157 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTT
1 AACCCGAATATAATACCAGCACAAAGCCTGCGGGA-TTT
* * *
14030196 AAACTC-AGATATAATACCAGCACTAGGCCTGCGGGATTT
1 -AACCCGA-ATATAATACCAGCACAAAGCCTGCGGGATTT
*
14030235 AACCCGAATATAATACCAGCACGAAGCCTGCGGGATTT
1 AACCCGAATATAATACCAGCACAAAGCCTGCGGGATTT
* *
14030273 AACCCGGATATATTACCAGCACAAAGCCTGCGGG
1 AACCCGAATATAATACCAGCACAAAGCCTGCGGG
14030307 TCTTTAAGCC
Statistics
Matches: 96, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
38 64 0.67
39 5 0.05
40 27 0.28
ACGTcount: A:0.35, C:0.28, G:0.20, T:0.17
Consensus pattern (38 bp):
AACCCGAATATAATACCAGCACAAAGCCTGCGGGATTT
Found at i:14030260 original size:78 final size:76
Alignment explanation
Indices: 14030157--14030306 Score: 201
Period size: 78 Copynumber: 1.9 Consensus size: 76
14030147 TGAGGTATAA
* * *
14030157 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAG
1 AACCCAAACATAACACCAGCACGAAGCCTACGGGA-TTT-AACCCAGATATAATACCAGCACAAA
14030222 GCCTGCGGGATTT
64 GCCTGCGGGATTT
* * * * * *
14030235 AACCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACAAAGC
1 AACCCAAACATAACACCAGCACGAAGCCTACGGGATTTAACCCAGATATAATACCAGCACAAAGC
14030300 CTGCGGG
66 CTGCGGG
14030307 TCTTTAAGCC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
76 29 0.46
77 3 0.05
78 31 0.49
ACGTcount: A:0.35, C:0.28, G:0.20, T:0.17
Consensus pattern (76 bp):
AACCCAAACATAACACCAGCACGAAGCCTACGGGATTTAACCCAGATATAATACCAGCACAAAGC
CTGCGGGATTT
Found at i:14030923 original size:94 final size:94
Alignment explanation
Indices: 14030753--14030935 Score: 239
Period size: 94 Copynumber: 1.9 Consensus size: 94
14030743 CACAATTCAA
* *
14030753 AATTCACATATGGTTCTAATCAATATCTTATAAGCAACTCAAACAGTTTTATCAATGTTTACAAC
1 AATTCACATATGGTTCTAATCAATAGCTTATAAGCAACTCAAACAGTTTTATCAAGGTTTACAAC
*
14030818 ATAATCACAAATTCA-CTACAAGCTTTTAG
66 ACAATCACAAATTCAGC-ACAAGCTTTTAG
* * *
14030847 AATTCACGTATGGGTT-TAATCGATAGCTTATGAGCAACT-AGAACAAG-TTTATCAAGGTTTAC
1 AATTCACATAT-GGTTCTAATCAATAGCTTATAAGCAACTCA-AAC-AGTTTTATCAAGGTTTAC
*
14030909 AACACAATCTCAAATTCAGCACAAGCT
63 AACACAATCACAAATTCAGCACAAGCT
14030936 GTTTTTCCTG
Statistics
Matches: 78, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
93 1 0.01
94 70 0.90
95 7 0.09
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.31
Consensus pattern (94 bp):
AATTCACATATGGTTCTAATCAATAGCTTATAAGCAACTCAAACAGTTTTATCAAGGTTTACAAC
ACAATCACAAATTCAGCACAAGCTTTTAG
Found at i:14034503 original size:28 final size:28
Alignment explanation
Indices: 14034472--14034547 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 28
14034462 ACTGACCGAT
14034472 CTCGCACACATAGTGCTCGATTGA-AGAA
1 CTCGCACACATAGTGCTCGATT-ACAGAA
* * * *
14034500 CTCGTACACATAGTGCCTCAATTACCGAT
1 CTCGCACACATAGTG-CTCGATTACAGAA
*
14034529 CTTGCACACATAGTGCTCG
1 CTCGCACACATAGTGCTCG
14034548 GTTCAAGGAA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
28 18 0.46
29 21 0.54
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (28 bp):
CTCGCACACATAGTGCTCGATTACAGAA
Found at i:14034809 original size:43 final size:43
Alignment explanation
Indices: 14034733--14035036 Score: 482
Period size: 43 Copynumber: 7.1 Consensus size: 43
14034723 TGCTCGAATT
** *
14034733 ACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
* * *
14034776 ACCAGCATGAAGCCTGCTAGGCATGAAGGCCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
* * *
14034819 ACTGGCACAAAACCTGCTAGGCACGAAGGCCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
* *
14034862 ACCGGCACGAAGCCTACTAGGCACGAAGGCCCAAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
*
14034905 ACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
* *
14034948 ACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACATATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
14034991 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
14035034 ACC
1 ACC
14035037 AAGTTTTCAT
Statistics
Matches: 238, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 238 1.00
ACGTcount: A:0.33, C:0.33, G:0.23, T:0.12
Consensus pattern (43 bp):
ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
Found at i:14036133 original size:37 final size:37
Alignment explanation
Indices: 14036078--14036151 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
14036068 CTTTCATAAG
*
14036078 CTTATTAAGTCTTAAGCAATTTAAACAGTTGAACTTA
1 CTTAGTAAGTCTTAAGCAATTTAAACAGTTGAACTTA
14036115 CTTAGTAAGTCTTAAGCAATTTAAACAGTTGAACTTA
1 CTTAGTAAGTCTTAAGCAATTTAAACAGTTGAACTTA
14036152 AAAACAAACC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (37 bp):
CTTAGTAAGTCTTAAGCAATTTAAACAGTTGAACTTA
Found at i:14036717 original size:38 final size:38
Alignment explanation
Indices: 14036621--14036769 Score: 140
Period size: 38 Copynumber: 3.9 Consensus size: 38
14036611 CGAGGTATAA
* * * * *
14036621 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTT
1 AACCCGAATATAATACCAGCACAAAGCCTGCGGGA-TTT
* * *
14036660 AAACTC-AGATATAAT-CCAGCACTAGGCCTGCGGGATTT
1 -AACCCGA-ATATAATACCAGCACAAAGCCTGCGGGATTT
* *
14036698 AACCCGAATATAATACCAGCACGAAGCCTGCGGAATTT
1 AACCCGAATATAATACCAGCACAAAGCCTGCGGGATTT
* * *
14036736 AACCTGGATATATTACCAGCACAAAGCCTGCGGG
1 AACCCGAATATAATACCAGCACAAAGCCTGCGGG
14036770 TCTTTAAGCC
Statistics
Matches: 91, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
37 11 0.12
38 53 0.58
39 18 0.20
40 9 0.10
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.18
Consensus pattern (38 bp):
AACCCGAATATAATACCAGCACAAAGCCTGCGGGATTT
Found at i:14036776 original size:77 final size:77
Alignment explanation
Indices: 14036621--14036769 Score: 185
Period size: 76 Copynumber: 1.9 Consensus size: 77
14036611 CGAGGTATAA
* * * *
14036621 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATCCAGCACTAGG
1 AACCCGAACATAACACCAGCACGAAGCCTACGGGAATTTAAACTCAGATATAATCCAGCACAAAG
14036686 CCTGCGGGATTT
66 CCTGCGGGATTT
* * * * * *
14036698 AACCCGAATATAATACCAGCACGAAGCCTGC-GGAATTTAACCT-GGATATATTACCAGCACAAA
1 AACCCGAACATAACACCAGCACGAAGCCTACGGGAATTTAAACTCAGATATAAT-CCAGCACAAA
14036761 GCCTGCGGG
65 GCCTGCGGG
14036770 TCTTTAAGCC
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
75 7 0.11
76 27 0.44
77 27 0.44
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.18
Consensus pattern (77 bp):
AACCCGAACATAACACCAGCACGAAGCCTACGGGAATTTAAACTCAGATATAATCCAGCACAAAG
CCTGCGGGATTT
Found at i:14041401 original size:21 final size:21
Alignment explanation
Indices: 14041372--14041433 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
14041362 TTCGGGTGGA
14041372 TTAGCTCTTACGAGCTTCTGT
1 TTAGCTCTTACGAGCTTCTGT
* *
14041393 TTAGTTCTTACGAG-TTGTTGT
1 TTAGCTCTTACGAGCTT-CTGT
*
14041414 TCAGCTCTTACGAGCTTCTG
1 TTAGCTCTTACGAGCTTCTG
14041434 CTGGCATTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 2 0.06
21 30 0.88
22 2 0.06
ACGTcount: A:0.15, C:0.21, G:0.21, T:0.44
Consensus pattern (21 bp):
TTAGCTCTTACGAGCTTCTGT
Found at i:14041653 original size:26 final size:26
Alignment explanation
Indices: 14041593--14041645 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14041583 AGATGAATTA
*
14041593 TTGATTGAAGTTGTGAATGACAAGTT
1 TTGATTGAAGTTATGAATGACAAGTT
14041619 TTGATTGAAGTTATGAATGACAAGTT
1 TTGATTGAAGTTATGAATGACAAGTT
14041645 T
1 T
14041646 CTTTTGAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.40
Consensus pattern (26 bp):
TTGATTGAAGTTATGAATGACAAGTT
Found at i:14044384 original size:34 final size:33
Alignment explanation
Indices: 14044338--14044416 Score: 104
Period size: 34 Copynumber: 2.3 Consensus size: 33
14044328 GGTTGTATTC
* * *
14044338 TCTTTTCTTTTGAGTTCTTTCCAGATACCTTTT
1 TCTTTTCCTTTGAGTTCTTGCCAGACACCTTTT
*
14044371 TCTTCTTCCTTTGAGTTCTTGCTAGACACCTTTT
1 TCTT-TTCCTTTGAGTTCTTGCCAGACACCTTTT
14044405 TCTTATTCCTTT
1 TCTT-TTCCTTT
14044417 TTGTCATTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
33 4 0.10
34 36 0.90
ACGTcount: A:0.11, C:0.24, G:0.09, T:0.56
Consensus pattern (33 bp):
TCTTTTCCTTTGAGTTCTTGCCAGACACCTTTT
Found at i:14045685 original size:27 final size:26
Alignment explanation
Indices: 14045655--14045916 Score: 260
Period size: 27 Copynumber: 9.7 Consensus size: 26
14045645 TCTCGGTTCA
*
14045655 TAAAATTACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCC-CAATTTG
* *
14045682 TAAAATTACTAAAATAACCCCGATTTG
1 TAAAATTACTGAAAT-ACCCCAATTTG
* *
14045709 TAAAATTA-TCGAAGTACCCCCAGTTTG
1 TAAAATTACT-GAAATA-CCCCAATTTG
*
14045736 TAAAATTACCGAAATACCCCTAATTTG
1 TAAAATTACTGAAATACCCC-AATTTG
*
14045763 TAAAATTACTAAAATACCACCAATTTG
1 TAAAATTACTGAAATACC-CCAATTTG
**
14045790 TAAAATTA-TCGAAATACCCTCGGTTTG
1 TAAAATTACT-GAAATACCC-CAATTTG
*
14045817 TAAAATTATTGAAATACCCCCAATTTG
1 TAAAATTACTGAAATA-CCCCAATTTG
*
14045844 TAAAATT-CTTGAAATACCCCCAGTTTG
1 TAAAATTAC-TGAAATA-CCCCAATTTG
* * *
14045871 CAAAATTACTAAAATACCCCCAATTTT
1 TAAAATTACTGAAATA-CCCCAATTTG
*
14045898 TGAAATTACTGAAATACCC
1 TAAAATTACTGAAATACCC
14045917 TTGTAGTGTA
Statistics
Matches: 199, Mismatches: 24, Indels: 25
0.80 0.10 0.10
Matches are distributed among these distances:
26 11 0.06
27 177 0.89
28 11 0.06
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (26 bp):
TAAAATTACTGAAATACCCCAATTTG
Found at i:14045790 original size:81 final size:80
Alignment explanation
Indices: 14045655--14045916 Score: 314
Period size: 81 Copynumber: 3.2 Consensus size: 80
14045645 TCTCGGTTCA
* *
14045655 TAAAATTACTGAAATA-CCCTCGATTTGTAAAATTACTAAAATAACCCCGATTTGTAAAATTATC
1 TAAAATTACTGAAATACCCCT-AATTTGTAAAATTACTAAAAT-ACCCCAATTTGTAAAATTATC
*
14045719 GAAGTACCCCCAGTTTG
64 GAAATACCCCCAGTTTG
*
14045736 TAAAATTACCGAAATACCCCTAATTTGTAAAATTACTAAAATACCACCAATTTGTAAAATTATCG
1 TAAAATTACTGAAATACCCCTAATTTGTAAAATTACTAAAATACC-CCAATTTGTAAAATTATCG
* *
14045801 AAATACCCTCGGTTTG
65 AAATACCCCCAGTTTG
* * * * *
14045817 TAAAATTATTGAAATACCCCCAATTTGTAAAATT-CTTGAAATACCCCCAGTTTGCAAAATTA-C
1 TAAAATTACTGAAATACCCCTAATTTGTAAAATTAC-TAAAATA-CCCCAATTTGTAAAATTATC
* * *
14045880 TAAAATACCCCCAATTTT
64 -GAAATACCCCCAGTTTG
*
14045898 TGAAATTACTGAAATACCC
1 TAAAATTACTGAAATACCC
14045917 TTGTAGTGTA
Statistics
Matches: 157, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
80 5 0.03
81 146 0.93
82 6 0.04
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (80 bp):
TAAAATTACTGAAATACCCCTAATTTGTAAAATTACTAAAATACCCCAATTTGTAAAATTATCGA
AATACCCCCAGTTTG
Found at i:14047861 original size:16 final size:16
Alignment explanation
Indices: 14047842--14047873 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14047832 AATTGTTTTA
14047842 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
14047858 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
14047874 ACTCCGTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:14048199 original size:51 final size:50
Alignment explanation
Indices: 14048080--14048408 Score: 222
Period size: 50 Copynumber: 6.6 Consensus size: 50
14048070 TCTCTGGTAG
* * * ** * *
14048080 CATAGTAGCCTACACTTAGTACTACACACATGA-CTTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGATC-GAATTATCGGGTACA
* * *
14048130 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAGCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGATCGAA-TTATCGGGTACA
* ** * *
14048181 CATAGTAGCCTGCACTTAGTACTACACA--TGCAACCTATCAATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTG-ATCGAAT-TATCGGGTACA
* * ** ** *
14048231 CGTAGTAG-CTGCACTTAGTACTACACACGTGA-CTTAACCATTTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGATC-GAATTATCGGGTACA
* * ** *
14048280 CGTAGTAGCCTGCACTTAGCACTACACACGTGATCGAAGTTAAAGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGATCGAA-TTATCGGGTACA
* * * * ** * *
14048331 CATAGAAGCCTGCACTTAATACTACACATGCGA-CCTATCAATC-GATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAT-TATCGGGTACA
*
14048380 CGTAGTAGCCTGCACTTAGTACTACACAC
1 CATAGTAGCCTGCACTTAGTACTACACAC
14048409 ATGACTCACA
Statistics
Matches: 217, Mismatches: 51, Indels: 23
0.75 0.18 0.08
Matches are distributed among these distances:
49 69 0.32
50 79 0.36
51 69 0.32
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGATCGAATTATCGGGTACA
Found at i:14048200 original size:101 final size:98
Alignment explanation
Indices: 14048075--14048262 Score: 279
Period size: 101 Copynumber: 1.9 Consensus size: 98
14048065 GAAGCTCTCT
* *
14048075 GGTAGCATAGTAGCCTACACTTAGTACTACACACATG-ACTTAACCATCTGATACACGTAGTAGC
1 GGTAGCATAGTAGCCTACACTTAGTACT--ACACATGAACCTAACAATCTGATACACGTAGTAG-
14048139 CTGCACTTAGTACTACACACGTGATCGAAGTTAGCG
63 CTGCACTTAGTACTACACACGTGATCGAAGTTAGCG
* * *
14048175 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGC
1 GGTA-GCATAGTAGCCTACACTTAGTACTACACATG-AACCTAACAATCTGATACACGTAGTAGC
14048240 TGCACTTAGTACTACACACGTGA
64 TGCACTTAGTACTACACACGTGA
14048263 CTTAACCATT
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
99 7 0.09
100 28 0.35
101 45 0.56
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (98 bp):
GGTAGCATAGTAGCCTACACTTAGTACTACACATGAACCTAACAATCTGATACACGTAGTAGCTG
CACTTAGTACTACACACGTGATCGAAGTTAGCG
Found at i:14048309 original size:150 final size:150
Alignment explanation
Indices: 14048082--14048414 Score: 560
Period size: 150 Copynumber: 2.2 Consensus size: 150
14048072 TCTGGTAGCA
*
14048082 TAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTGCACTT
* ** * *
14048147 AGTACTACACACGTGATCGAAGTTAGCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
66 AGCACTACACACGTGATCGAAGTTAAAGGGTACGCATAGAAGCCTGCACTTAATACTACACATGC
*
14048212 AACCTATCAATCTGGTACACG
131 AACCTATCAATC-GATACACG
* *
14048233 TAGTAG-CTGCACTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTGCACTT
14048297 AGCACTACACACGTGATCGAAGTTAAAGGGTACGCATAGAAGCCTGCACTTAATACTACACATGC
66 AGCACTACACACGTGATCGAAGTTAAAGGGTACGCATAGAAGCCTGCACTTAATACTACACATGC
*
14048362 GACCTATCAATCGATACACG
131 AACCTATCAATCGATACACG
14048382 TAGTAGCCTGCACTTAGTACTACACACATGACT
1 TAGTAGCCTGCACTTAGTACTACACACATGACT
14048415 CACAACAGAT
Statistics
Matches: 170, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
149 13 0.08
150 151 0.89
151 6 0.04
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (150 bp):
TAGTAGCCTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTGCACTT
AGCACTACACACGTGATCGAAGTTAAAGGGTACGCATAGAAGCCTGCACTTAATACTACACATGC
AACCTATCAATCGATACACG
Found at i:14048329 original size:100 final size:100
Alignment explanation
Indices: 14048225--14048408 Score: 253
Period size: 100 Copynumber: 1.8 Consensus size: 100
14048215 CTATCAATCT
* * * * * * *
14048225 GGTACACGTAGTAG-CTGCACTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGC
1 GGTACACATAGAAGCCTGCACTTAATACTACACACGCGACCT-ACCAATCGATACACGTAGTAGC
14048289 CTGCACTTAGCACTACACACGTGATCGAAGTTAAAG
65 CTGCACTTAGCACTACACACGTGATCGAAGTTAAAG
* * *
14048325 GGTACGCATAGAAGCCTGCACTTAATACTACACATGCGACCTATCAATCGATACACGTAGTAGCC
1 GGTACACATAGAAGCCTGCACTTAATACTACACACGCGACCTACCAATCGATACACGTAGTAGCC
*
14048390 TGCACTTAGTACTACACAC
66 TGCACTTAGCACTACACAC
14048409 ATGACTCACA
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
100 49 0.68
101 23 0.32
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (100 bp):
GGTACACATAGAAGCCTGCACTTAATACTACACACGCGACCTACCAATCGATACACGTAGTAGCC
TGCACTTAGCACTACACACGTGATCGAAGTTAAAG
Found at i:14048403 original size:49 final size:50
Alignment explanation
Indices: 14048082--14048413 Score: 285
Period size: 49 Copynumber: 6.6 Consensus size: 50
14048072 TCTGGTAGCA
* * * * *
14048082 TAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGATACACG
** * * * * * *
14048132 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT-TAGCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAATCTGATACACG
* ** *
14048183 TAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGATACACG
* * * *
14048233 TAGTAG-CTGCACTTAGTACTACACACGTGACTTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGATACACG
* ** * ** * * *
14048282 TAGTAGCCTGCACTTAGCACTACACACGTGATCGAAGTTAA-AGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAATCTGATACACG
* * * *
14048333 TAGAAGCCTGCACTTAATACTACACATGCGACCTATCAATC-GATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGATACACG
*
14048382 TAGTAGCCTGCACTTAGTACTACACACATGAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC
14048414 TCACAACAGA
Statistics
Matches: 218, Mismatches: 57, Indels: 15
0.75 0.20 0.05
Matches are distributed among these distances:
49 77 0.35
50 70 0.32
51 70 0.32
52 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGATACACG
Found at i:14048790 original size:19 final size:20
Alignment explanation
Indices: 14048762--14048808 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
14048752 AAGAACATGT
14048762 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
14048783 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
14048802 TATATAT
1 TATATAT
14048809 ATATTTACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:14052060 original size:24 final size:23
Alignment explanation
Indices: 14052033--14052077 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
14052023 AATGGACTAA
14052033 GGAGAAAATCAAGGAGAAGATTGG
1 GGAGAAAATCAAGGAG-AGATTGG
* *
14052057 GGAGGAAATCATGGAGAGATT
1 GGAGAAAATCAAGGAGAGATT
14052078 TTAGGAGGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.42, C:0.04, G:0.38, T:0.16
Consensus pattern (23 bp):
GGAGAAAATCAAGGAGAGATTGG
Found at i:14058066 original size:12 final size:12
Alignment explanation
Indices: 14058034--14058070 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
14058024 ATTAAGATTG
*
14058034 CTCATTGAACTT
1 CTCATTGAACTA
14058046 CTC-TTGAACTA
1 CTCATTGAACTA
14058057 CTCATTGAAC-A
1 CTCATTGAACTA
14058068 CTC
1 CTC
14058071 GGAATACTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.35
Consensus pattern (12 bp):
CTCATTGAACTA
Found at i:14058661 original size:31 final size:31
Alignment explanation
Indices: 14058574--14058655 Score: 103
Period size: 31 Copynumber: 2.6 Consensus size: 31
14058564 CTTCCTGCAT
* * *
14058574 TAAAATCCAACCAAATACAACA-AATATAGCA
1 TAAAATACAACCAAAAACAA-ATAATTTAGCA
*
14058605 TAAAATGCAACCAAAAACAAATAATTTAGCA
1 TAAAATACAACCAAAAACAAATAATTTAGCA
14058636 TAAAAATACAACCAAAAACA
1 T-AAAATACAACCAAAAACA
14058656 TTAATTCTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
30 1 0.02
31 27 0.60
32 17 0.38
ACGTcount: A:0.61, C:0.20, G:0.04, T:0.16
Consensus pattern (31 bp):
TAAAATACAACCAAAAACAAATAATTTAGCA
Found at i:14058939 original size:21 final size:21
Alignment explanation
Indices: 14058887--14058962 Score: 91
Period size: 21 Copynumber: 3.6 Consensus size: 21
14058877 TCTGCTGCCA
*
14058887 TCGCTGCTGCCTTTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
* *
14058908 ACACT-CGTGCCTCTGCCTCCC
1 TCGCTGC-TGCCTCTGCCTCCC
*
14058929 TCGCTGCTGCCGCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
*
14058950 TCTCTGCTGCCTC
1 TCGCTGCTGCCTC
14058963 AGCTCTAAGT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 1 0.02
21 43 0.96
22 1 0.02
ACGTcount: A:0.03, C:0.50, G:0.18, T:0.29
Consensus pattern (21 bp):
TCGCTGCTGCCTCTGCCTCCC
Found at i:14060131 original size:12 final size:12
Alignment explanation
Indices: 14060099--14060135 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
14060089 ATTAAGATTG
*
14060099 CTCATTGAACTT
1 CTCATTGAACTA
14060111 CTC-TTGAACTA
1 CTCATTGAACTA
14060122 CTCATTGAAC-A
1 CTCATTGAACTA
14060133 CTC
1 CTC
14060136 GGAATACTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.35
Consensus pattern (12 bp):
CTCATTGAACTA
Found at i:14060726 original size:31 final size:31
Alignment explanation
Indices: 14060639--14060720 Score: 103
Period size: 31 Copynumber: 2.6 Consensus size: 31
14060629 CTTCCTGCAT
* * *
14060639 TAAAATCCAACCAAATACAACA-AATATAGCA
1 TAAAATACAACCAAAAACAA-ATAATTTAGCA
*
14060670 TAAAATGCAACCAAAAACAAATAATTTAGCA
1 TAAAATACAACCAAAAACAAATAATTTAGCA
14060701 TAAAAATACAACCAAAAACA
1 T-AAAATACAACCAAAAACA
14060721 TTAATTCTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
30 1 0.02
31 27 0.60
32 17 0.38
ACGTcount: A:0.61, C:0.20, G:0.04, T:0.16
Consensus pattern (31 bp):
TAAAATACAACCAAAAACAAATAATTTAGCA
Found at i:14061004 original size:21 final size:21
Alignment explanation
Indices: 14060952--14061068 Score: 114
Period size: 21 Copynumber: 5.6 Consensus size: 21
14060942 TCTGCTGCCA
*
14060952 TCGCTGCTGCCTTTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
* *
14060973 ACACT-CGTGCCTCTGCCTCCC
1 TCGCTGC-TGCCTCTGCCTCCC
*
14060994 TCGCTGCTGCCGCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
* *
14061015 T--CTTCGTGCCTCTGCCTCTC
1 TCGCTGC-TGCCTCTGCCTCCC
* *
14061035 TCGCTGCAGCCGCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
*
14061056 TCTCTGCTGCCTC
1 TCGCTGCTGCCTC
14061069 CGCTTTAAGT
Statistics
Matches: 75, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
19 3 0.04
20 14 0.19
21 54 0.72
22 4 0.05
ACGTcount: A:0.03, C:0.50, G:0.19, T:0.29
Consensus pattern (21 bp):
TCGCTGCTGCCTCTGCCTCCC
Found at i:14061038 original size:41 final size:41
Alignment explanation
Indices: 14060952--14061058 Score: 151
Period size: 41 Copynumber: 2.6 Consensus size: 41
14060942 TCTGCTGCCA
** * *
14060952 TCGCTGCTGCCTTTGCCTCCCACACTCGTGCCTCTGCCTCCC
1 TCGCTGCTGCCGCTGCCTCCCTC-TTCGTGCCTCTGCCTCCC
*
14060994 TCGCTGCTGCCGCTGCCTCCCTCTTCGTGCCTCTGCCTCTC
1 TCGCTGCTGCCGCTGCCTCCCTCTTCGTGCCTCTGCCTCCC
*
14061035 TCGCTGCAGCCGCTGCCTCCCTCT
1 TCGCTGCTGCCGCTGCCTCCCTCT
14061059 CTGCTGCCTC
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 39 0.66
42 20 0.34
ACGTcount: A:0.03, C:0.50, G:0.19, T:0.29
Consensus pattern (41 bp):
TCGCTGCTGCCGCTGCCTCCCTCTTCGTGCCTCTGCCTCCC
Found at i:14061700 original size:17 final size:19
Alignment explanation
Indices: 14061663--14061700 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
14061653 TACAATATAG
14061663 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTATTTAA
14061682 TAGTAAAAAT-TTA-TTAA
1 TAGTAAAAATATTATTTAA
14061699 TA
1 TA
14061701 TTTGAAAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.32
18 3 0.16
19 10 0.53
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (19 bp):
TAGTAAAAATATTATTTAA
Found at i:14066715 original size:9 final size:9
Alignment explanation
Indices: 14066701--14067063 Score: 321
Period size: 9 Copynumber: 41.2 Consensus size: 9
14066691 TATTTAAGTA
*
14066701 TTATGTAAG
1 TTATATAAG
*
14066710 TTATGTAAG
1 TTATATAAG
*
14066719 TTATGATATG
1 TTAT-ATAAG
* *
14066729 ATATAT-AT
1 TTATATAAG
*
14066737 TTATGTAAG
1 TTATATAAG
*
14066746 TTATAT-AT
1 TTATATAAG
*
14066754 TTATCTAAG
1 TTATATAAG
*
14066763 TTCTATAAG
1 TTATATAAG
*
14066772 TTAAATAAG
1 TTATATAAG
*
14066781 TTATGTAAG
1 TTATATAAG
*
14066790 TTATAT-AT
1 TTATATAAG
*
14066798 TTATCTAAG
1 TTATATAAG
14066807 TTATATAAG
1 TTATATAAG
*
14066816 TTATGTAAG
1 TTATATAAG
*
14066825 TTATGTAAG
1 TTATATAAG
*
14066834 TTATAT-AT
1 TTATATAAG
*
14066842 TTATCTAAG
1 TTATATAAG
14066851 TTATATAAG
1 TTATATAAG
*
14066860 TTATGTAAG
1 TTATATAAG
*
14066869 TTATGTAAG
1 TTATATAAG
*
14066878 TTATAT-AT
1 TTATATAAG
*
14066886 TTATCTAAG
1 TTATATAAG
14066895 TTATATAAG
1 TTATATAAG
*
14066904 TTATGTAAG
1 TTATATAAG
*
14066913 TTATGTAAG
1 TTATATAAG
*
14066922 TTATAT-AT
1 TTATATAAG
*
14066930 TTATCTAAG
1 TTATATAAG
14066939 TTATATAAG
1 TTATATAAG
*
14066948 TTATCTAAG
1 TTATATAAG
*
14066957 TTATGTAAG
1 TTATATAAG
*
14066966 TTATAT-AT
1 TTATATAAG
*
14066974 TTATCTAAG
1 TTATATAAG
*
14066983 TTATGTAAG
1 TTATATAAG
*
14066992 TTATAT-AT
1 TTATATAAG
*
14067000 TTATCTAAG
1 TTATATAAG
*
14067009 TTATGTAAG
1 TTATATAAG
*
14067018 TTGTATAAG
1 TTATATAAG
*
14067027 TTATAT-AT
1 TTATATAAG
*
14067035 TTATCTAAG
1 TTATATAAG
14067044 TTATATAAG
1 TTATATAAG
*
14067053 TTATGTAAG
1 TTATATAAG
14067062 TT
1 TT
14067064 TTGTAAGTAA
Statistics
Matches: 283, Mismatches: 61, Indels: 20
0.78 0.17 0.05
Matches are distributed among these distances:
8 52 0.18
9 225 0.80
10 6 0.02
ACGTcount: A:0.36, C:0.03, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATATAAG
Found at i:14066785 original size:44 final size:44
Alignment explanation
Indices: 14066737--14067056 Score: 482
Period size: 44 Copynumber: 7.3 Consensus size: 44
14066727 TGATATATAT
* **
14066737 TTATGTAAGTTATATATTTATCTAAGTTCTATAAGTTAAATAAG
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
14066781 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
14066825 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
14066869 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
*
14066913 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATCTAAG
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
* * *
14066957 TTATGTAAGTTATATATTTATCTAAGTTATGTAAGTTATAT-AT
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
* * * * * * *
14067000 TTATCTAAGTTATGTAAGTTGTATAAGTTATAT-ATTTATCTAAG
1 TTATGTAAGTTATAT-ATTTATCTAAGTTATATAAGTTATGTAAG
*
14067044 TTATATAAGTTAT
1 TTATGTAAGTTAT
14067057 GTAAGTTTTG
Statistics
Matches: 257, Mismatches: 17, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
43 20 0.08
44 237 0.92
ACGTcount: A:0.36, C:0.03, G:0.12, T:0.48
Consensus pattern (44 bp):
TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAG
Found at i:14066807 original size:35 final size:36
Alignment explanation
Indices: 14066702--14067063 Score: 328
Period size: 35 Copynumber: 10.3 Consensus size: 36
14066692 ATTTAAGTAT
* * * * *
14066702 TATGTAAGTTATGTAAGTTATGATATGATATAT-ATT
1 TATGTAAGTTATATAAGTTAT-CTAAGTTATATAAGT
* *
14066738 TATGTAAGTTATAT-ATTTATCTAAGTTCTATAAGT
1 TATGTAAGTTATATAAGTTATCTAAGTTATATAAGT
** * * * *
14066773 TAAATAAGTTATGTAAGTTATAT-ATTTATCTAAGT
1 TATGTAAGTTATATAAGTTATCTAAGTTATATAAGT
* * * *
14066808 TATATAAGTTATGTAAGTTATGTAAGTTATAT-ATT
1 TATGTAAGTTATATAAGTTATCTAAGTTATATAAGT
* * *
14066843 TATCTAAGTTATATAAGTTATGTAAGTTATGTAAGT
1 TATGTAAGTTATATAAGTTATCTAAGTTATATAAGT
* * * * *
14066879 TATAT-ATTTATCTAAGTTATATAAGTTATGTAAGT
1 TATGTAAGTTATATAAGTTATCTAAGTTATATAAGT
*
14066914 TATGTAAGTTATAT-ATTTATCTAAGTTATATAAGT
1 TATGTAAGTTATATAAGTTATCTAAGTTATATAAGT
* * * * *
14066949 TATCTAAGTTATGTAAGTTATAT-ATTTATCTAAGT
1 TATGTAAGTTATATAAGTTATCTAAGTTATATAAGT
* *
14066984 TATGTAAGTTATAT-ATTTATCTAAGTTATGTAAGT
1 TATGTAAGTTATATAAGTTATCTAAGTTATATAAGT
* * *
14067019 TGTATAAGTTATAT-ATTTATCTAAGTTATATAAGT
1 TATGTAAGTTATATAAGTTATCTAAGTTATATAAGT
14067054 TATGTAAGTT
1 TATGTAAGTT
14067064 TTGTAAGTAA
Statistics
Matches: 268, Mismatches: 51, Indels: 15
0.80 0.15 0.04
Matches are distributed among these distances:
34 13 0.05
35 212 0.79
36 43 0.16
ACGTcount: A:0.36, C:0.03, G:0.13, T:0.48
Consensus pattern (36 bp):
TATGTAAGTTATATAAGTTATCTAAGTTATATAAGT
Found at i:14067057 original size:44 final size:44
Alignment explanation
Indices: 14066706--14067071 Score: 231
Period size: 44 Copynumber: 8.5 Consensus size: 44
14066696 AAGTATTATG
* * *
14066706 TAAGTTATGTAAGTTATGATATGATATATATTTATGTAAGTTATA
1 TAAGTTATGTAAGTTATG-TAAGTTATATATTTATCTAAGTTATA
* * * * * * *
14066751 T-ATTTATCTAAGTTCTATAAGTTAAATAAGTTATGTAAGTTATA
1 TAAGTTATGTAAGTTATGTAAGTTATAT-ATTTATCTAAGTTATA
* * * * * *
14066795 T-ATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAGTTATA
1 TAAGTTATGTAAGTTATGTAAGTTATAT-ATTTATCTAAGTTATA
* * * * * *
14066839 T-ATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAGTTATA
1 TAAGTTATGTAAGTTATGTAAGTTATAT-ATTTATCTAAGTTATA
* * * * * *
14066883 T-ATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAGTTATA
1 TAAGTTATGTAAGTTATGTAAGTTATAT-ATTTATCTAAGTTATA
* * * * * *
14066927 T-ATTTATCTAAGTTATATAAGTTATCTAAGTTATGTAAGTTATA
1 TAAGTTATGTAAGTTATGTAAGTTATAT-ATTTATCTAAGTTATA
* * *
14066971 T-ATTTATCTAAGTTATGTAAGTTATATATTTATCTAAGTTATG
1 TAAGTTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATA
14067014 TAAG---T-T--G-TA--TAAGTTATATATTTATCTAAGTTATA
1 TAAGTTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATA
*
14067049 TAAGTTATGTAAGTTTTGTAAGT
1 TAAGTTATGTAAGTTATGTAAGT
14067072 AATGTTAAAT
Statistics
Matches: 290, Mismatches: 20, Indels: 23
0.87 0.06 0.07
Matches are distributed among these distances:
35 29 0.10
37 2 0.01
38 2 0.01
39 1 0.00
40 1 0.00
41 2 0.01
42 1 0.00
43 21 0.07
44 230 0.79
45 1 0.00
ACGTcount: A:0.36, C:0.03, G:0.13, T:0.48
Consensus pattern (44 bp):
TAAGTTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATA
Found at i:14067219 original size:29 final size:29
Alignment explanation
Indices: 14067187--14067256 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 29
14067177 TAAATTGCGG
* *
14067187 ATTAAATAATATTTATAAAAATTATTTTA
1 ATTAAATAATATTGAAAAAAATTATTTTA
*
14067216 ATTAAATAATACTGAAAAAAATTATTTTA
1 ATTAAATAATATTGAAAAAAATTATTTTA
*
14067245 ATTCAATAATAT
1 ATTAAATAATAT
14067257 ACACGTCGGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (29 bp):
ATTAAATAATATTGAAAAAAATTATTTTA
Found at i:14067471 original size:24 final size:24
Alignment explanation
Indices: 14067428--14067474 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
14067418 TTAACTTAAA
** *
14067428 TGATAAAACGGGCGATAATATTTG
1 TGATAAAACGGAAGAGAATATTTG
14067452 TGATAAAACGGAAGAGAATATTT
1 TGATAAAACGGAAGAGAATATTT
14067475 CAATAATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.43, C:0.06, G:0.23, T:0.28
Consensus pattern (24 bp):
TGATAAAACGGAAGAGAATATTTG
Found at i:14067591 original size:64 final size:64
Alignment explanation
Indices: 14067522--14067655 Score: 250
Period size: 64 Copynumber: 2.1 Consensus size: 64
14067512 ATATTTTATT
*
14067522 AAATATTTGTATATTAGATGGGACATATTATATTAATAAATAAATTTATTAAAAATCATGATAG
1 AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCATGATAG
*
14067586 AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
1 AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCATGATAG
14067650 AAATAT
1 AAATAT
14067656 AGAAATATTA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 68 1.00
ACGTcount: A:0.47, C:0.04, G:0.11, T:0.38
Consensus pattern (64 bp):
AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCATGATAG
Found at i:14068457 original size:6 final size:7
Alignment explanation
Indices: 14068438--14068463 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14068428 ACATATAAAC
14068438 GCAAAAA
1 GCAAAAA
14068445 GCAAAAA
1 GCAAAAA
14068452 GCAAAAA
1 GCAAAAA
14068459 GCAAA
1 GCAAA
14068464 TCTATAAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.69, C:0.15, G:0.15, T:0.00
Consensus pattern (7 bp):
GCAAAAA
Found at i:14070350 original size:20 final size:20
Alignment explanation
Indices: 14070327--14070371 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
14070317 TTTGATTCGA
*
14070327 GGAAATATTTAGGGATTAGG
1 GGAAATAGTTAGGGATTAGG
*
14070347 GGAAA-AGTTAGGGATTTGG
1 GGAAATAGTTAGGGATTAGG
14070366 GGAAAT
1 GGAAAT
14070372 TTGGGTGGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.27
Consensus pattern (20 bp):
GGAAATAGTTAGGGATTAGG
Found at i:14071615 original size:29 final size:29
Alignment explanation
Indices: 14071583--14071640 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
14071573 TTAGAGTTTA
14071583 GATCATGGGTTATGATTTAGGGGTTAGGC
1 GATCATGGGTTATGATTTAGGGGTTAGGC
14071612 GATCATGGGTTATGATTTAGGGGTTAGGC
1 GATCATGGGTTATGATTTAGGGGTTAGGC
14071641 TTTATATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.21, C:0.07, G:0.38, T:0.34
Consensus pattern (29 bp):
GATCATGGGTTATGATTTAGGGGTTAGGC
Found at i:14072347 original size:41 final size:41
Alignment explanation
Indices: 14072204--14072334 Score: 187
Period size: 41 Copynumber: 3.2 Consensus size: 41
14072194 TACCTTTTGT
*
14072204 GGCG-TTTGGA-AATAAAGCGCCACTA-TATCTCAGTTTTTTGC
1 GGCGTTTTGGATAA-AAA-CGCCACTATTA-CTCAGTTTTTAGC
*
14072245 GGCGTTTTGGATGAAAACGCCACTATTACTCAGTTTTTAGC
1 GGCGTTTTGGATAAAAACGCCACTATTACTCAGTTTTTAGC
14072286 GGCGTTTTGGATAAAAACGCCACTATTACTCAGTTTTTAGC
1 GGCGTTTTGGATAAAAACGCCACTATTACTCAGTTTTTAGC
*
14072327 GGTGTTTT
1 GGCGTTTT
14072335 TGTTTCAAAC
Statistics
Matches: 83, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
41 71 0.86
42 11 0.13
43 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (41 bp):
GGCGTTTTGGATAAAAACGCCACTATTACTCAGTTTTTAGC
Found at i:14086403 original size:28 final size:28
Alignment explanation
Indices: 14086368--14086425 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
14086358 AACTCAATTA
14086368 TATCATATTTTTAATTTTTTTTAGTATT
1 TATCATATTTTTAATTTTTTTTAGTATT
14086396 TATCATATTTTTAATTTTTTTTAGTATT
1 TATCATATTTTTAATTTTTTTTAGTATT
14086424 TA
1 TA
14086426 CTCCGGTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.67
Consensus pattern (28 bp):
TATCATATTTTTAATTTTTTTTAGTATT
Found at i:14113912 original size:38 final size:39
Alignment explanation
Indices: 14113850--14113929 Score: 126
Period size: 38 Copynumber: 2.1 Consensus size: 39
14113840 TACTTTCTAT
* *
14113850 TTGGCGTGATTCGAGTGGATCAGCTCTTACGAGCTTCTG
1 TTGGCGTGATTCGAGAGGACCAGCTCTTACGAGCTTCTG
*
14113889 TTGGCGTG-TTCGAGAGGACCAGCTCTTATGAGCTTCTG
1 TTGGCGTGATTCGAGAGGACCAGCTCTTACGAGCTTCTG
14113927 TTG
1 TTG
14113930 ACAATATACT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
38 30 0.79
39 8 0.21
ACGTcount: A:0.15, C:0.20, G:0.31, T:0.34
Consensus pattern (39 bp):
TTGGCGTGATTCGAGAGGACCAGCTCTTACGAGCTTCTG
Found at i:14114632 original size:12 final size:12
Alignment explanation
Indices: 14114612--14114643 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
14114602 CTAATGCCAC
*
14114612 TTTGAGTTGGTA
1 TTTGGGTTGGTA
14114624 TTTGGGTTGGTA
1 TTTGGGTTGGTA
14114636 TTTGGGTT
1 TTTGGGTT
14114644 TCTTAGGGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.09, C:0.00, G:0.38, T:0.53
Consensus pattern (12 bp):
TTTGGGTTGGTA
Found at i:14115368 original size:25 final size:25
Alignment explanation
Indices: 14115334--14115395 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
14115324 TATGATTTAT
* * * *
14115334 TATGCTATGATTCGATTTGGTATGA
1 TATGCTATGATACGATCTAGCATGA
*
14115359 TATGTTATGATACGATCTAGCATGA
1 TATGCTATGATACGATCTAGCATGA
14115384 TATGCTATGATA
1 TATGCTATGATA
14115396 TGATAAGTTC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (25 bp):
TATGCTATGATACGATCTAGCATGA
Found at i:14118097 original size:9 final size:9
Alignment explanation
Indices: 14118083--14118108 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
14118073 CATTGAACAT
14118083 TATAATTTG
1 TATAATTTG
14118092 TATAATTTG
1 TATAATTTG
14118101 TATAATTT
1 TATAATTT
14118109 TAATTCTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (9 bp):
TATAATTTG
Found at i:14132553 original size:19 final size:19
Alignment explanation
Indices: 14132529--14132567 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
14132519 AAGTTAGTAG
14132529 TTTCAGAATACCATTTCCA
1 TTTCAGAATACCATTTCCA
*
14132548 TTTCAGAATGCCATTTCCA
1 TTTCAGAATACCATTTCCA
14132567 T
1 T
14132568 AAACCATGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.26, G:0.08, T:0.38
Consensus pattern (19 bp):
TTTCAGAATACCATTTCCA
Found at i:14137898 original size:12 final size:12
Alignment explanation
Indices: 14137883--14137907 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14137873 TCATCATCTT
14137883 CTTCTTCCTCTC
1 CTTCTTCCTCTC
14137895 CTTCTTCCTCTC
1 CTTCTTCCTCTC
14137907 C
1 C
14137908 CCATGCTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (12 bp):
CTTCTTCCTCTC
Found at i:14142962 original size:23 final size:23
Alignment explanation
Indices: 14142915--14142958 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
14142905 CTTGTCGAAA
14142915 AATTATCAAAATTAATCAAAATC
1 AATTATCAAAATTAATCAAAATC
*
14142938 AATTAT-AAAATTAATTAAAAT
1 AATTATCAAAATTAATCAAAAT
14142959 TCAACATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (23 bp):
AATTATCAAAATTAATCAAAATC
Found at i:14145256 original size:15 final size:15
Alignment explanation
Indices: 14145224--14145252 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14145214 TTTTTTTGTG
14145224 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
14145239 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
14145253 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:14146627 original size:6 final size:6
Alignment explanation
Indices: 14146597--14146777 Score: 95
Period size: 6 Copynumber: 29.3 Consensus size: 6
14146587 AAGAAACATT
* * *
14146597 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * * *
14146646 ATCAAA ATCAAA ATTAGA ATCATA ATTAGGTA A-CAGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* * *
14146695 ATCAGGTA A-CAGA ATTAGA ATCAGA ATCAGA ATTAGGCA A-CAGA ATTAGA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* *
14146745 ATCAGT ATCCGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA AT-CAG-A ATCAGA ATCAGA ATCAGA AT
14146778 GTGAATGCAA
Statistics
Matches: 132, Mismatches: 26, Indels: 34
0.69 0.14 0.18
Matches are distributed among these distances:
5 10 0.08
6 103 0.78
7 12 0.09
8 7 0.05
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:14146652 original size:37 final size:37
Alignment explanation
Indices: 14146606--14146692 Score: 111
Period size: 37 Copynumber: 2.4 Consensus size: 37
14146596 TATCAGAACT
* * *
14146606 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
* * *
14146643 AGAATCAAAATCAAAATTAGAATCATAATTAGGTAAC
1 AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
*
14146680 AGAATCAGAATCA
1 AGAATCAAAATCA
14146693 GTATCAGGTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.20
Consensus pattern (37 bp):
AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:14146701 original size:25 final size:25
Alignment explanation
Indices: 14146673--14146774 Score: 105
Period size: 25 Copynumber: 3.8 Consensus size: 25
14146663 AATCATAATT
14146673 AGGTAACAGAATCAGAATCAGTATC
1 AGGTAACAGAATCAGAATCAGTATC
* *
14146698 AGGTAACAGAATTAGAATCAGAATCAGAATT
1 AGGTAAC------AGAATCAGAATCAGTATC
* *
14146729 AGGCAACAGAATTAGAATCAGTATC
1 AGGTAACAGAATCAGAATCAGTATC
*
14146754 CGGTAACAGAATCAGAATCAG
1 AGGTAACAGAATCAGAATCAG
14146775 AATGTGAATG
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
25 40 0.65
31 22 0.35
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.20
Consensus pattern (25 bp):
AGGTAACAGAATCAGAATCAGTATC
Found at i:14146750 original size:56 final size:56
Alignment explanation
Indices: 14146618--14146777 Score: 194
Period size: 56 Copynumber: 2.8 Consensus size: 56
14146608 AATCAAAATG
* * * * *
14146618 AGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAAAATTAGAATCATAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATC------AGAATCAGAATTAGGCAAC
*
14146680 AGAATCAGAATCAGTATCAGGTAACAGAATTAGAATCAGAATCAGAATTAGGCAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATTAGGCAAC
* *
14146736 AGAATTAGAATCAGTATCCGGTAACAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAT
14146778 GTGAATGCAA
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
56 56 0.63
62 33 0.37
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (56 bp):
AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATTAGGCAAC
Found at i:14146770 original size:31 final size:31
Alignment explanation
Indices: 14146618--14146777 Score: 122
Period size: 31 Copynumber: 5.4 Consensus size: 31
14146608 AATCAAAATG
* *
14146618 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGTATCAGGTAACAGAATC
* * * * *
14146649 AAAATCAAAATTAGAATCA--TAATTAGGTAA-C
1 AGAATCAGAATCAGTATCAGGTAA-CA-G-AATC
*
14146680 AGAATCAGAATCAGTATCAGGTAACAGAATT
1 AGAATCAGAATCAGTATCAGGTAACAGAATC
* *
14146711 AGAATCAGAATCAGAATTAGG---C--AA-C
1 AGAATCAGAATCAGTATCAGGTAACAGAATC
* *
14146736 AGAATTAGAATCAGTATCCGGTAACAGAATC
1 AGAATCAGAATCAGTATCAGGTAACAGAATC
14146767 AGAATCAGAAT
1 AGAATCAGAAT
14146778 GTGAATGCAA
Statistics
Matches: 98, Mismatches: 19, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
25 17 0.17
26 2 0.02
28 2 0.02
29 2 0.02
30 5 0.05
31 64 0.65
32 3 0.03
33 3 0.03
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAGTATCAGGTAACAGAATC
Found at i:14147400 original size:27 final size:27
Alignment explanation
Indices: 14147354--14147428 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
14147344 GGTATTTCAA
*
14147354 TAATTTTGTAAATCGAGGGTAAAACGG
1 TAATTTTATAAATCGAGGGTAAAACGG
* **
14147381 TAATTTTATAAATC-AGGGGTACATTGG
1 TAATTTTATAAATCGA-GGGTAAAACGG
* *
14147408 TAATTTTACAAGTCGAGGGTA
1 TAATTTTATAAATCGAGGGTA
14147429 TTTCAATATT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.03
27 38 0.95
28 1 0.03
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.33
Consensus pattern (27 bp):
TAATTTTATAAATCGAGGGTAAAACGG
Found at i:14148616 original size:14 final size:15
Alignment explanation
Indices: 14148579--14148620 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
14148569 AAATACAAAC
14148579 TATATATGCTGAAATG
1 TATATATG-TGAAATG
*
14148595 TATA-ATGTGATA-G
1 TATATATGTGAAATG
14148608 TATATATGTGAAA
1 TATATATGTGAAA
14148621 GTCAAATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 5 0.22
14 11 0.48
15 3 0.13
16 4 0.17
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.38
Consensus pattern (15 bp):
TATATATGTGAAATG
Found at i:14148908 original size:43 final size:42
Alignment explanation
Indices: 14148755--14148909 Score: 127
Period size: 43 Copynumber: 3.7 Consensus size: 42
14148745 TGTGTTCTCG
* * * * *
14148755 TGTAAGACTATGTCAGGGACGTTGGTATCGATATGTGATTATG-
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATATGA-TA-GC
* * * * *
14148798 TGTAAGACCATGTCTGGGACATCGACATTG-TATTTGAT-TC
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATAGC
* *
14148838 GTGTAAGACCCTGTCTGGGACAATGGCATCGATATATGATAGC
1 -TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATAGC
* *
14148881 ATGTAAGACCATGTTTGGGACGTTGGCAT
1 -TGTAAGACCATGTCTGGGACATTGGCAT
14148910 TGTACGATAT
Statistics
Matches: 87, Mismatches: 21, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
41 26 0.30
42 13 0.15
43 48 0.55
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATAGC
Found at i:14151395 original size:25 final size:25
Alignment explanation
Indices: 14151325--14151395 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 25
14151315 TTATTTTCTC
* *
14151325 AAAAATTTAATTAA-TAAAAATTATT
1 AAAAATTCAATAAATTAAAAATTA-T
*
14151350 AATAATTCAATAAATTGAAAAATTA-
1 AAAAATTCAATAAATT-AAAAATTAT
*
14151375 AAAAATTGAATAAAATTAAAA
1 AAAAATTCAAT-AAATTAAAA
14151396 TTTAGGAGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
25 24 0.63
26 6 0.16
27 8 0.21
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.32
Consensus pattern (25 bp):
AAAAATTCAATAAATTAAAAATTAT
Found at i:14152157 original size:22 final size:19
Alignment explanation
Indices: 14152118--14152159 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
14152108 TGCAAAGTTG
14152118 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
14152137 ATAATAGATATAATTATATATT
1 ATAATA-AT-TAA-TATATATT
14152159 A
1 A
14152160 AAGATCATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 3 0.15
22 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:14153523 original size:26 final size:26
Alignment explanation
Indices: 14153494--14153686 Score: 113
Period size: 27 Copynumber: 7.3 Consensus size: 26
14153484 CTAGTTTACC
14153494 AAATTACTGAAATACCCCCAGTTGTA
1 AAATTACTGAAATACCCCCAGTTGTA
* * *
14153520 AAATTAC-CAAAGTA-CCCCGGTTTATA
1 AAATTACTGAAA-TACCCCCAG-TTGTA
* * **
14153546 AAATTACCGAAATATCATC-GATTGTA
1 AAATTACTGAAATACCCCCAG-TTGTA
* * *
14153572 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCC-CCAGTTGTA
* ** ** *
14153599 AAATTACCGAAATATGCTTAGTTTGCA
1 AAATTACTGAAATACCCCCAG-TTGTA
* *
14153626 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCC-CCAGTTGTA
* * *
14153653 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCC-CCAGTTGTA
14153680 AAATTAC
1 AAATTAC
14153687 CAAAGTACCC
Statistics
Matches: 127, Mismatches: 32, Indels: 15
0.73 0.18 0.09
Matches are distributed among these distances:
25 8 0.06
26 41 0.32
27 77 0.61
28 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (26 bp):
AAATTACTGAAATACCCCCAGTTGTA
Found at i:14153604 original size:27 final size:27
Alignment explanation
Indices: 14153515--14153804 Score: 273
Period size: 27 Copynumber: 10.9 Consensus size: 27
14153505 ATACCCCCAG
* *
14153515 TTGTAAAATTACCAAAGTACCC-CGGT
1 TTGTAAAATTACCAAAATACCCTCGAT
* * * *
14153541 TTATAAAATTACCGAAATATCATCGA-
1 TTGTAAAATTACCAAAATACCCTCGAT
*
14153567 TTGTAAAATTACTAAAATACCCTCGAT
1 TTGTAAAATTACCAAAATACCCTCGAT
* ** *
14153594 TTGTAAAATTACCGAAATATGCT-TAGT
1 TTGTAAAATTACCAAAATACCCTCGA-T
* **
14153621 TTGCAAAATTACTGAAATACCCTCGAT
1 TTGTAAAATTACCAAAATACCCTCGAT
* *
14153648 TTGTAAAATTACTAAAATACCCTCGAC
1 TTGTAAAATTACCAAAATACCCTCGAT
* *
14153675 TTGTAAAATTACCAAAGTACCCCCGAT
1 TTGTAAAATTACCAAAATACCCTCGAT
* * * * *
14153702 TTATAAAGTTACCCAAATATCCTTGAT
1 TTGTAAAATTACCAAAATACCCTCGAT
* * *
14153729 TTGTAAAATTACCGAAATACCGTTGA-
1 TTGTAAAATTACCAAAATACCCTCGAT
*
14153755 TTGTAAAATTACTAAAATACCCTCGAT
1 TTGTAAAATTACCAAAATACCCTCGAT
* * *
14153782 TTATAAAATTATCGAAATACCCT
1 TTGTAAAATTACCAAAATACCCT
14153805 TGTAGGGTAG
Statistics
Matches: 211, Mismatches: 48, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
26 61 0.29
27 149 0.71
28 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCTCGAT
Found at i:14153720 original size:81 final size:79
Alignment explanation
Indices: 14153494--14153804 Score: 331
Period size: 81 Copynumber: 3.9 Consensus size: 79
14153484 CTAGTTTACC
* * *
14153494 AAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCGGTTTATAAAATTACCGAAA
1 AAATTACTAAAATACCCTCGA-TTGTAAAATTACCAAAGTACCCCGATTTATAAAATTACCGAAA
* *
14153558 TATCATCGA-TTGTA
65 TACCCTCGATTTGTA
** ** ** *
14153572 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAA-TATGCTTAGTTTGCAAAATTACTGA
1 AAATTACTAAAATACCCTCGA-TTGTAAAATTACC-AAAGTACCCCGA-TTTATAAAATTACCGA
14153636 AATACCCTCGATTTGTA
63 AATACCCTCGATTTGTA
* *
14153653 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAGTTACCCAA
1 AAATTACTAAAATACCCTCGA-TTGTAAAATTACCAAAGTA-CCCCGATTTATAAAATTACCGAA
* *
14153718 ATATCCTTGATTTGTA
64 ATACCCTCGATTTGTA
** * * * * *
14153734 AAATTACCGAAATACCGTTGATTGTAAAATTACTAAAATACCCTCGATTTATAAAATTATCGAAA
1 AAATTACTAAAATACCCTCGATTGTAAAATTACCAAAGTACCC-CGATTTATAAAATTACCGAAA
14153799 TACCCT
65 TACCCT
14153805 TGTAGGGTAG
Statistics
Matches: 191, Mismatches: 35, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
78 16 0.08
79 21 0.11
80 68 0.36
81 84 0.44
82 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (79 bp):
AAATTACTAAAATACCCTCGATTGTAAAATTACCAAAGTACCCCGATTTATAAAATTACCGAAAT
ACCCTCGATTTGTA
Found at i:14153818 original size:27 final size:27
Alignment explanation
Indices: 14153788--14154412 Score: 683
Period size: 27 Copynumber: 23.2 Consensus size: 27
14153778 CGATTTATAA
14153788 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* *
14153815 AATTA-CTAAAATACCATTGTAGGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
* **
14153842 AATTACCGAAATACCCTTGTAATGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* *
14153869 AATTA-CTGAAATACCCCTGTAAGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
* *
14153896 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
14153923 AATTA-CTGAAATACCCCTGTAGGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
* *
14153950 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
14153977 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
14154004 AATTATCGAAATACCCTTGTATGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* *
14154031 AATTATTGAAATA-CCATGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
14154057 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
14154084 AATTA-CTGAAATA-CCTCTATAGGGTAG
1 AATTATC-GAAATACCCT-TGTAGGGTAG
* *
14154111 AATTATCGAAATACCCTTGTTGCGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* *
14154138 AAATA-CGAAAATACCTTTGTAGGGTAG
1 AATTATCG-AAATACCCTTGTAGGGTAG
* * *
14154165 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * * **
14154192 AATTATTGAAATGCCCCTGTAGAATAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * *
14154219 AAATACCAAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* *
14154246 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * *
14154273 AATTATTGAAATACCCCTGTAGGATAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
14154300 AATTA-CTGAAATACCCGTGTAGGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
* *
14154327 AAATATCGAAATACCCGTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * *
14154354 AAATATCGAAATACCCCTGTGGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * * *
14154381 AATTA-CTGAGATACCCTTATGGGGTAA
1 AATTATC-GAAATACCCTTGTAGGGTAG
14154408 AATTA
1 AATTA
14154413 CCGTTTTGCC
Statistics
Matches: 521, Mismatches: 61, Indels: 32
0.85 0.10 0.05
Matches are distributed among these distances:
26 32 0.06
27 479 0.92
28 10 0.02
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (27 bp):
AATTATCGAAATACCCTTGTAGGGTAG
Found at i:14153846 original size:54 final size:54
Alignment explanation
Indices: 14153788--14154413 Score: 774
Period size: 54 Copynumber: 11.6 Consensus size: 54
14153778 CGATTTATAA
* * **
14153788 AATTATCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCATTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
** *
14153842 AATTACCGAAATACCCTTGTAATGTAGAATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
*
14153896 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * *
14153950 AATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * *
14154004 AATTATCGAAATACCCTTGTATGGTAGAATTATTGAAATA-CCATGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* *
14154057 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCTCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * * **
14154111 AATTATCGAAATACCCTTGTTGCGTAGAAATAC-GAAAATACCTTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTG-AAATACCCCTGTAGGGTAG
* * * * **
14154165 AAATACCGAAATACCCCTGTAGGGTAGAATTATTGAAATGCCCCTGTAGAATAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * *
14154219 AAATACCAAAATACCCTTGTAGGGTAGAAATA-TCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAG
** * * *
14154273 AATTATTGAAATACCCCTGTAGGATAGAATTACTGAAATACCCGTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * * *
14154327 AAATATCGAAATACCCGTGTAGGGTAGAAATA-TCGAAATACCCCTGTGGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAG
* * * * *
14154381 AATTACTGAGATACCCTTATGGGGTAAAATTAC
1 AATTACCGAAATACCCTTGTAGGGTAGAATTAC
14154414 CGTTTTGCCC
Statistics
Matches: 490, Mismatches: 75, Indels: 13
0.85 0.13 0.02
Matches are distributed among these distances:
53 52 0.11
54 436 0.89
55 2 0.00
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
Found at i:14153880 original size:81 final size:81
Alignment explanation
Indices: 14153788--14154415 Score: 774
Period size: 81 Copynumber: 7.8 Consensus size: 81
14153778 CGATTTATAA
* * ** *
14153788 AATTATCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCATTGTAGGGTAGAATTACCGAAA
1 AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
* **
14153853 TACCCTTGTAATGTAG
66 TACCCCTGTAGGGTAG
* * * *
14153869 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAA
1 AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
14153934 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
*** * *
14153950 AATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAA
1 AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
* *
14154015 TACCCTTGTATGGTAG
66 TACCCCTGTAGGGTAG
* *
14154031 AATTATTGAAATA-CCATGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAA
1 AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
* *
14154095 TACCTCTATAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * * * *
14154111 AATTATCGAAATACCCTTGTTGCGTAGAAATA-CGAAAATACCTTTGTAGGGTAGAAATACCGAA
1 AATTATTGAAATACCCCTGTAGGGTAGAATTACCG-AAATACCCTTGTAGGGTAGAATTACCGAA
14154175 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* ** * * * *
14154192 AATTATTGAAATGCCCCTGTAGAATAGAAATACCAAAATACCCTTGTAGGGTAGAAATATCGAAA
1 AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
14154257 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * *
14154273 AATTATTGAAATACCCCTGTAGGATAGAATTACTGAAATACCCGTGTAGGGTAGAAATATCGAAA
1 AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
*
14154338 TACCCGTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * * * * *
14154354 AAATATCGAAATACCCCTGTGGGGTAGAATTACTGAGATACCCTTATGGGGTAAAATTACCG
1 AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCG
14154416 TTTTGCCCCA
Statistics
Matches: 476, Mismatches: 68, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
80 74 0.16
81 401 0.84
82 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.27
Consensus pattern (81 bp):
AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
TACCCCTGTAGGGTAG
Found at i:14154730 original size:20 final size:20
Alignment explanation
Indices: 14154705--14154745 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14154695 TGTGTGCATT
14154705 TATTGTGGACTTCGTATCGA
1 TATTGTGGACTTCGTATCGA
* *
14154725 TATTGTGGGCTTCGTGTCGA
1 TATTGTGGACTTCGTATCGA
14154745 T
1 T
14154746 TATAGACCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.15, G:0.29, T:0.41
Consensus pattern (20 bp):
TATTGTGGACTTCGTATCGA
Found at i:14155079 original size:27 final size:26
Alignment explanation
Indices: 14154978--14155081 Score: 127
Period size: 27 Copynumber: 3.9 Consensus size: 26
14154968 ATTCTGTTAA
* * *
14154978 GTGGCTTTGCCACATTATCTAATTCTG
1 GTGGCTCTGCCACAATATCT-GTTCTG
*
14155005 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
14155032 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
14155059 GTGACTCTGTCACAATATCTGTT
1 GTGGCTCTGCCACAATATCTGTT
14155082 TTGGCAGCCA
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 10 0.14
27 53 0.77
28 6 0.09
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:14155241 original size:6 final size:6
Alignment explanation
Indices: 14155232--14155333 Score: 84
Period size: 6 Copynumber: 16.7 Consensus size: 6
14155222 TACCTGATAT
* * *
14155232 TGATTC TGATTC TGATTT TGATTC CGGTTC TG-TTACC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC
* * *
14155281 TGATTC TG-TCATC TGATTC TGATTC TAATTC TCATTT TGATTC T-AGTTC
1 TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC TGATTC TGA-TTC
14155330 TGAT
1 TGAT
14155334 AATGTTTCTT
Statistics
Matches: 78, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
5 4 0.05
6 63 0.81
7 8 0.10
8 3 0.04
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.50
Consensus pattern (6 bp):
TGATTC
Found at i:14155303 original size:31 final size:30
Alignment explanation
Indices: 14155236--14155312 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 30
14155226 TGATATTGAT
*
14155236 TCTGATTCTGATTTTGATTCCGGTTCTG-T
1 TCTGATTCTGATTCTGATTCCGGTTCTGAT
*
14155265 TACCTGATTCTGATTCTGATT-CTGTCATCTGAT
1 T--CTGATTCTGATTCTGATTCCGGT--TCTGAT
*
14155298 TCTGATTCTAATTCT
1 TCTGATTCTGATTCT
14155313 CATTTTGATT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
29 1 0.03
30 3 0.08
31 30 0.75
32 4 0.10
33 2 0.05
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.49
Consensus pattern (30 bp):
TCTGATTCTGATTCTGATTCCGGTTCTGAT
Found at i:14155306 original size:25 final size:25
Alignment explanation
Indices: 14155242--14155312 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
14155232 TGATTCTGAT
* * * *
14155242 TCTGATTTTGATTCCGGTTCTGTTA
1 TCTGATTCTGATTCTGATTCTGTCA
*
14155267 CCTGATTCTGATTCTGATTCTGTCA
1 TCTGATTCTGATTCTGATTCTGTCA
*
14155292 TCTGATTCTGATTCTAATTCT
1 TCTGATTCTGATTCTGATTCT
14155313 CATTTTGATT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.15, C:0.20, G:0.15, T:0.49
Consensus pattern (25 bp):
TCTGATTCTGATTCTGATTCTGTCA
Found at i:14159544 original size:218 final size:218
Alignment explanation
Indices: 14159166--14159601 Score: 854
Period size: 218 Copynumber: 2.0 Consensus size: 218
14159156 GCGTTGCTGC
14159166 AACTGTGGAGTGTAGGGCTAGGTGGGTTGAGATATTCCCCACATGGAGTGTAGGGCTGGTACGGG
1 AACTGTGGAGTGTAGGGCTAGGTGGGTTGAGATATTCCCCACATGGAGTGTAGGGCTGGTACGGG
14159231 TGCAGTGTAGCGGTTGGTGGGTTGAGTAGTCTCCCCAATGGGTTTGCATGCATTACTACTATTGT
66 TGCAGTGTAGCGGTTGGTGGGTTGAGTAGTCTCCCCAATGGGTTTGCATGCATTACTACTATTGT
*
14159296 TACCTATGTTACTGAACTGGGCCTATGGGCCACACTATTATGTAAAAAGGGGCTAAGGCCTTGCT
131 TACCTATGTTACTGAACTAGGCCTATGGGCCACACTATTATGTAAAAAGGGGCTAAGGCCTTGCT
14159361 ACTGTATTCTGAAAAGGGCTTCG
196 ACTGTATTCTGAAAAGGGCTTCG
14159384 AACTGTGGAGTGTAGGGCTAGGTGGGTTGAGATATTCCCCACATGGAGTGTAGGGCTGGTACGGG
1 AACTGTGGAGTGTAGGGCTAGGTGGGTTGAGATATTCCCCACATGGAGTGTAGGGCTGGTACGGG
14159449 TGCAGTGTAGCGGTTGGTGGGTTGAGTAGTCTCCCCAATGGGTTTGCATGCATTACTACTATTGT
66 TGCAGTGTAGCGGTTGGTGGGTTGAGTAGTCTCCCCAATGGGTTTGCATGCATTACTACTATTGT
*
14159514 TACCTATGTTACTGAACTAGGCCTATGGGCCACACTGTTATGTAAAAAGGGGCTAAGGCCTTGCT
131 TACCTATGTTACTGAACTAGGCCTATGGGCCACACTATTATGTAAAAAGGGGCTAAGGCCTTGCT
14159579 ACTGTATTCTGAAAAGGGCTTCG
196 ACTGTATTCTGAAAAGGGCTTCG
14159602 GTCCACTGTG
Statistics
Matches: 216, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
218 216 1.00
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (218 bp):
AACTGTGGAGTGTAGGGCTAGGTGGGTTGAGATATTCCCCACATGGAGTGTAGGGCTGGTACGGG
TGCAGTGTAGCGGTTGGTGGGTTGAGTAGTCTCCCCAATGGGTTTGCATGCATTACTACTATTGT
TACCTATGTTACTGAACTAGGCCTATGGGCCACACTATTATGTAAAAAGGGGCTAAGGCCTTGCT
ACTGTATTCTGAAAAGGGCTTCG
Found at i:14166003 original size:246 final size:246
Alignment explanation
Indices: 14165569--14166061 Score: 880
Period size: 246 Copynumber: 2.0 Consensus size: 246
14165559 CTTATAGAAG
* *
14165569 GCCCATGTGTTGGCCAAAACCCGGTTGAATTTTTGAATTTTTGGACTTAGGAGTTAGGGGTTCTG
1 GCCCATGTGTTGGCCAAAACCCGGTTGAATTTTTGAATTGTTGGACTTAGGAGTTAGGGGTTCTC
*
14165634 GCTAGATGGCCCTTGTATAGAGATATGGGCAAATTCAATCACAAAAAGAGCCTTAGTAAAGTGGC
66 GCTAGATGGCCCTTGTATAGAGATATGGGCAAATGCAATCACAAAAAGAGCCTTAGTAAAGTGGC
* * *
14165699 AAGGGTGATGCCACTAGGCTCGTAAAAAGGTGGCGTGTGGAGCATTGGGGAAAGCATGGGATCGA
131 AAGGGTGACGCCACTAGGCTCCTAAAAAGGTGGCGTGTGGAGCATTGGGCAAAGCATGGGATCGA
* *
14165764 TTCCCTGTGTTGACAAATAGATGCATTCATTTTTAAGTGCTGGAGCGGTAA
196 TTCCCTGTATTGACAAACAGATGCATTCATTTTTAAGTGCTGGAGCGGTAA
14165815 GCCCATGTGTTGGCCAAAACCCGGTTGAATTTTTGAATTGTTGGACTTAGGAGTTAGGGGTTCTC
1 GCCCATGTGTTGGCCAAAACCCGGTTGAATTTTTGAATTGTTGGACTTAGGAGTTAGGGGTTCTC
14165880 GCTAGATGGCCCTTGTATAGAGATATGGGCAAAATGC-ATCACAAAAAGAGCCTTAGTAAAGTGG
66 GCTAGATGGCCCTTGTATAGAGATATGGGC-AAATGCAATCACAAAAAGAGCCTTAGTAAAGTGG
14165944 CAAGGGTGACGCCACTAGGCTCCTAAAAAGGTGGCGTGTGGAGCATTGGGCAAAGCATGGGATCG
130 CAAGGGTGACGCCACTAGGCTCCTAAAAAGGTGGCGTGTGGAGCATTGGGCAAAGCATGGGATCG
* *
14166009 ATTCCCTGTATTGACAAACAGATGCATTTATTTTTAAGTGCTGGAGGGGTAA
195 ATTCCCTGTATTGACAAACAGATGCATTCATTTTTAAGTGCTGGAGCGGTAA
14166061 G
1 G
14166062 TGTTGGAGTC
Statistics
Matches: 236, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
246 231 0.98
247 5 0.02
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (246 bp):
GCCCATGTGTTGGCCAAAACCCGGTTGAATTTTTGAATTGTTGGACTTAGGAGTTAGGGGTTCTC
GCTAGATGGCCCTTGTATAGAGATATGGGCAAATGCAATCACAAAAAGAGCCTTAGTAAAGTGGC
AAGGGTGACGCCACTAGGCTCCTAAAAAGGTGGCGTGTGGAGCATTGGGCAAAGCATGGGATCGA
TTCCCTGTATTGACAAACAGATGCATTCATTTTTAAGTGCTGGAGCGGTAA
Found at i:14166448 original size:64 final size:64
Alignment explanation
Indices: 14166347--14166474 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
14166337 TGTTTTTCTT
* *
14166347 CTTCAAAACCATTCATCAATTCTGCTGTTCATCGATACTTTTACCGAATCCATAAAAGCTGAAA
1 CTTCAAAACCATTCATCAATTCTACTGTTCATCGATACTTTTACCGAATCCATAAAAGCCGAAA
**
14166411 CTTCAAAACCATTCATCAATTCTACTGTTCATCGATACTTTTGTCGAATCCATAAAAGCCGAAA
1 CTTCAAAACCATTCATCAATTCTACTGTTCATCGATACTTTTACCGAATCCATAAAAGCCGAAA
14166475 TCTTGAACAC
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.34, C:0.25, G:0.09, T:0.31
Consensus pattern (64 bp):
CTTCAAAACCATTCATCAATTCTACTGTTCATCGATACTTTTACCGAATCCATAAAAGCCGAAA
Found at i:14167162 original size:53 final size:53
Alignment explanation
Indices: 14167082--14167187 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
14167072 TAGGACATCG
14167082 GAAGAGATCTCAGTAGCAGTCGTCGCGAATCAGGTGTGTACCGAACACCCTTT
1 GAAGAGATCTCAGTAGCAGTCGTCGCGAATCAGGTGTGTACCGAACACCCTTT
*
14167135 GAAGAGATCTCAGTAGCAGTCGTCGCGAATCAGGTGTGTACTGAACACCCTTT
1 GAAGAGATCTCAGTAGCAGTCGTCGCGAATCAGGTGTGTACCGAACACCCTTT
14167188 CTTAGTTCAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (53 bp):
GAAGAGATCTCAGTAGCAGTCGTCGCGAATCAGGTGTGTACCGAACACCCTTT
Found at i:14167734 original size:25 final size:25
Alignment explanation
Indices: 14167656--14167735 Score: 65
Period size: 25 Copynumber: 3.0 Consensus size: 25
14167646 TAGTTCATCC
14167656 ACGTACTGGAGGCTTTGCCTCAACTT
1 ACGTACTGGAGGCTTTGCCTCAAC-T
* *
14167682 AC-TGACATTTGAGCAGCGTTG-CTACAACT
1 ACGT-AC--TGGAG--GCTTTGCCT-CAACT
14167711 ACGTACTGGAGGCTTTGCCTCAACT
1 ACGTACTGGAGGCTTTGCCTCAACT
14167736 TACTGATATT
Statistics
Matches: 42, Mismatches: 4, Indels: 17
0.67 0.06 0.27
Matches are distributed among these distances:
25 11 0.26
26 6 0.14
27 4 0.10
28 4 0.10
29 7 0.17
30 10 0.24
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.29
Consensus pattern (25 bp):
ACGTACTGGAGGCTTTGCCTCAACT
Found at i:14167740 original size:55 final size:55
Alignment explanation
Indices: 14167656--14167765 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
14167646 TAGTTCATCC
14167656 ACGTACTGGAGGCTTTGCCTCAACTTACTGACATTTGAGCAGCGTTGCTACAACT
1 ACGTACTGGAGGCTTTGCCTCAACTTACTGACATTTGAGCAGCGTTGCTACAACT
* *
14167711 ACGTACTGGAGGCTTTGCCTCAACTTACTGATATTTGAGCAGCGTTGCTGCAACT
1 ACGTACTGGAGGCTTTGCCTCAACTTACTGACATTTGAGCAGCGTTGCTACAACT
14167766 GTGGACTGTA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (55 bp):
ACGTACTGGAGGCTTTGCCTCAACTTACTGACATTTGAGCAGCGTTGCTACAACT
Found at i:14168819 original size:27 final size:26
Alignment explanation
Indices: 14168786--14169076 Score: 221
Period size: 27 Copynumber: 10.8 Consensus size: 26
14168776 ATACCCCCAC
*
14168786 TTGTAAAATTACCAAAGTACCCCCGAT
1 TTGTAAAATTACCAAA-TACCCTCGAT
* * *
14168813 TTATAAAATTATCGAAATACCGTCGA-
1 TTGTAAAATTA-CCAAATACCCTCGAT
* *
14168839 TTGTAAAATTACTAAAATACCCTCAAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
*
14168866 TTGTAAAATTACCGAAATACGCTC-AGT
1 TTGTAAAATTACC-AAATACCCTCGA-T
* * *
14168893 TTGCAAAATTACTGAAATACCCTTGAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
* *
14168920 TTCTAAAATTACTAGAATACCCTCGAT
1 TTGTAAAATTACCA-AATACCCTCGAT
* * *
14168947 TTGTATAATTACAAAAGTACCC-CCAGT
1 TTGTAAAATTACCAAA-TACCCTCGA-T
* *
14168974 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTA-CCAAATACCCTCGAT
* * *
14169001 TTGTAAAATTATCAAAATACCGTTGA-
1 TTGTAAAATTA-CCAAATACCCTCGAT
* *
14169027 TTGTAAAATTGCTTAAATACCCTCGAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
* *
14169054 TTATAAAGTTACCGAAATACCCT
1 TTGTAAAATTACC-AAATACCCT
14169077 TGTAGGGTAG
Statistics
Matches: 208, Mismatches: 41, Indels: 30
0.75 0.15 0.11
Matches are distributed among these distances:
25 2 0.01
26 46 0.22
27 149 0.72
28 11 0.05
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGAT
Found at i:14168957 original size:81 final size:81
Alignment explanation
Indices: 14168766--14169021 Score: 263
Period size: 81 Copynumber: 3.2 Consensus size: 81
14168756 TAGTTTACCC
* * * * *
14168766 AATTACTGAAATACCC-CCACTTGTAAAATTACCAAAGTACCCCC-GATTTATAAAATTA-TCGA
1 AATTACTAAAATACCCTCAATTTGTAAAATTACAAAAGTACCCCCAG-TTTACAAAATTACT-GA
*
14168828 AATACCGTCGA-TTGTAA
64 AATACCCTCGATTTGTAA
* * * *
14168845 AATTACTAAAATACCCTCAATTTGTAAAATTACCGAAA-TACGCTCAGTTTGCAAAATTACTGAA
1 AATTACTAAAATACCCTCAATTTGTAAAATTA-CAAAAGTACCCCCAGTTTACAAAATTACTGAA
* *
14168909 ATACCCTTGATTTCTAA
65 ATACCCTCGATTTGTAA
* * * * **
14168926 AATTACTAGAATACCCTCGATTTGTATAATTACAAAAGTACCCCCAGTTTATAAAATTACCCAAA
1 AATTACTAAAATACCCTCAATTTGTAAAATTACAAAAGTACCCCCAGTTTACAAAATTACTGAAA
*
14168991 TATCCTCGATTTGTAA
66 TACCCTCGATTTGTAA
14169007 AATTA-TCAAAATACC
1 AATTACT-AAAATACC
14169022 GTTGATTGTA
Statistics
Matches: 145, Mismatches: 25, Indels: 12
0.80 0.14 0.07
Matches are distributed among these distances:
79 15 0.10
80 44 0.30
81 86 0.59
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
AATTACTAAAATACCCTCAATTTGTAAAATTACAAAAGTACCCCCAGTTTACAAAATTACTGAAA
TACCCTCGATTTGTAA
Found at i:14169073 original size:161 final size:161
Alignment explanation
Indices: 14168786--14169078 Score: 371
Period size: 161 Copynumber: 1.8 Consensus size: 161
14168776 ATACCCCCAC
* * *
14168786 TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTATCGAAATACCGTCGATTGTAAAATTAC
1 TTGTAAAATTACAAAAGTACCCCCGATTTATAAAATTACCCAAATACCGTCGATTGTAAAATTAC
* * *
14168851 TAAAATACCCTCAATTTGTAAAATTACCGAAATACGCTCAGTTTGCAAAATTACTGAAATACCCT
66 TAAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCAGTTTACAAAATTACCGAAATACCCT
14168916 TGATTTCTAAAATTACTAGAATACCCTCGAT
131 TGATTTCTAAAATTACTAGAATACCCTCGAT
*
14168947 TTGTATAATTACAAAAGTACCCCC-AGTTTATAAAATTACCCAAATATCC-TCGATTTGTAAAAT
1 TTGTAAAATTACAAAAGTACCCCCGA-TTTATAAAATTACCCAAATA-CCGTCGA-TTGTAAAAT
* ** * ** * *
14169010 TA-TCAAAATACCGTTGA-TTGTAAAATTGCTTAAATACCCTC-GATTTATAAAGTTACCGAAAT
63 TACT-AAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCAG-TTTACAAAATTACCGAAAT
14169072 ACCCTTG
126 ACCCTTG
14169079 TAGGGTAGAA
Statistics
Matches: 112, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
160 2 0.02
161 87 0.78
162 23 0.21
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (161 bp):
TTGTAAAATTACAAAAGTACCCCCGATTTATAAAATTACCCAAATACCGTCGATTGTAAAATTAC
TAAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCAGTTTACAAAATTACCGAAATACCCT
TGATTTCTAAAATTACTAGAATACCCTCGAT
Found at i:14169092 original size:27 final size:27
Alignment explanation
Indices: 14169062--14169683 Score: 708
Period size: 27 Copynumber: 23.1 Consensus size: 27
14169052 ATTTATAAAG
*
14169062 TTACCGAAATACCCTTGTAGGGTAGAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
* *
14169089 TTACTAAAATACCATTGTAGGGTAGAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
** *
14169116 TTACCAAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
* **
14169143 TTACTGAAATACCCCTGTAATGTAGAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
*
14169170 TTACTGAAATACCAC-TGTAAGGTAGAA
1 TTACTGAAATACC-CTTGTAGGGTAGAA
* * * *
14169197 TTACCGAAATACCCCTCTAGGGTAAAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
14169224 TTACTG---TACCCTTGTAGGGTAGAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
14169248 TTACTGAAATACCCTTGTAGGGTAGAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
* *
14169275 TTATTGAAATACCCTTGTATGGTAGAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
*
14169302 TTA-TCGAAATACCCTTGTATGGTAGAA
1 TTACT-GAAATACCCTTGTAGGGTAGAA
* *
14169329 TTATTGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
*
14169356 TTA-TCGAAATACCCCTG-AGGGGTAGAA
1 TTACT-GAAATACCCTTGTA-GGGTAGAA
* *
14169383 TTACTGAAATACCCCTATAGGGTAGAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
14169410 TTA-TCGAAATACCCTTGTAGGGTAGTAA
1 TTACT-GAAATACCCTTGTAGGGTAG-AA
14169438 -TACTGAAATACCCTTGTAGGGTAGAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
* * *
14169464 ATACCGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
* *
14169491 TTATTGAAATACTCC-TGTAGGATAGAA
1 TTACTGAAATAC-CCTTGTAGGGTAGAA
* *
14169518 ATACCGAAATACCCTTGTAGGGTAGAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
* * *
14169545 CTA-TCGAAATACCCCTGTAGGGTAGAT
1 TTACT-GAAATACCCTTGTAGGGTAGAA
* * *
14169572 TTTCTGAAATACCCTTATAGGATAGAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
14169599 TTACTGAAATACCCTTGTAGGGTAGAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
* * * *
14169626 ATACCGAAATACCCCTATAGGGTAGAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
** * *
14169653 TTGTTGAGATACCCTTGTAGGGTAAAA
1 TTACTGAAATACCCTTGTAGGGTAGAA
14169680 TTAC
1 TTAC
14169684 CATTTTGCCC
Statistics
Matches: 513, Mismatches: 63, Indels: 38
0.84 0.10 0.06
Matches are distributed among these distances:
24 21 0.04
26 9 0.02
27 473 0.92
28 10 0.02
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (27 bp):
TTACTGAAATACCCTTGTAGGGTAGAA
Found at i:14169093 original size:161 final size:161
Alignment explanation
Indices: 14168766--14169101 Score: 362
Period size: 161 Copynumber: 2.1 Consensus size: 161
14168756 TAGTTTACCC
* * * * * *
14168766 AATTACTGAAATACCC-CCACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTATCGAAA
1 AATTACTAAAATACCCTCGATTTGTAAAATTACAAAAGTACCCCCGATTTATAAAATTACCCAAA
*
14168830 TACCGTCGATTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCGAAATACGCTCAGTTT
66 TACCGTCGATTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCAGTTT
* * **
14168895 GCAAAATTACTGAAATACCCTTGATTTCTAA
131 ACAAAATTACCGAAATACCCTTGATGGCTAA
* *
14168926 AATTACTAGAATACCCTCGATTTGTATAATTACAAAAGTACCCCC-AGTTTATAAAATTACCCAA
1 AATTACTAAAATACCCTCGATTTGTAAAATTACAAAAGTACCCCCGA-TTTATAAAATTACCCAA
* ** * **
14168990 ATATCC-TCGATTTGTAAAATTA-TCAAAATACCGTTGA-TTGTAAAATTGCTTAAATACCCTC-
65 ATA-CCGTCGA-TTGTAAAATTACT-AAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCA
* * * *
14169051 GATTTATAAAGTTACCGAAATACCCTTG-TAGGGTAG
127 G-TTTACAAAATTACCGAAATACCCTTGAT-GGCTAA
14169087 AATTACTAAAATACC
1 AATTACTAAAATACC
14169102 ATTGTAGGGT
Statistics
Matches: 145, Mismatches: 24, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
160 17 0.12
161 105 0.72
162 23 0.16
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (161 bp):
AATTACTAAAATACCCTCGATTTGTAAAATTACAAAAGTACCCCCGATTTATAAAATTACCCAAA
TACCGTCGATTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCAGTTT
ACAAAATTACCGAAATACCCTTGATGGCTAA
Found at i:14169129 original size:188 final size:188
Alignment explanation
Indices: 14168789--14169129 Score: 418
Period size: 188 Copynumber: 1.8 Consensus size: 188
14168779 CCCCCACTTG
*
14168789 TAAAATTACCAAAGTACCCCCGATTTATAAAATTATCGAAATACCGTCGATTGTAAAATTACTAA
1 TAAAATTACCAAAGTACCCCCGATTTATAAAATTATCAAAATACCGTCGATTGTAAAATTACTAA
* * ** * *
14168854 AATACCCTCAATTTGTAAAATTACCGAAATACGCTCAGTTTGCAAAATTACTGAAATACCCTTGA
66 AATACCCTCAATTTATAAAATTACCGAAATACCCTCAGTGGGCAAAATTACTAAAATACCATTGA
** * *
14168919 TTTCTAAAATTACTAGAATACCCTCGATTTGTATAATTACAAAAGTACCCCCAGTTTA
131 TGGCTAAAATTACCAAAATACCCTCGATTTGTATAATTACAAAAGTACCCCCAGTTTA
* * * * * *
14168977 TAAAATTACCCAAA-TATCCTCGATTTGTAAAATTATCAAAATACCGTTGATTGTAAAATTGCTT
1 TAAAATTA-CCAAAGTACCCCCGATTTATAAAATTATCAAAATACCGTCGATTGTAAAATTACTA
* * * * *
14169041 AAATACCCTCGATTTATAAAGTTACCGAAATACCCT-TGTAGGGTAGAATTACTAAAATACCATT
65 AAATACCCTCAATTTATAAAATTACCGAAATACCCTCAGT-GGGCAAAATTACTAAAATACCATT
* *
14169105 G-TAGGGTAGAATTACCAAAATACCC
129 GAT-GGCTAAAATTACCAAAATACCC
14169130 CTGTAGGGTA
Statistics
Matches: 126, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
187 3 0.02
188 118 0.94
189 5 0.04
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (188 bp):
TAAAATTACCAAAGTACCCCCGATTTATAAAATTATCAAAATACCGTCGATTGTAAAATTACTAA
AATACCCTCAATTTATAAAATTACCGAAATACCCTCAGTGGGCAAAATTACTAAAATACCATTGA
TGGCTAAAATTACCAAAATACCCTCGATTTGTATAATTACAAAAGTACCCCCAGTTTA
Found at i:14170014 original size:20 final size:20
Alignment explanation
Indices: 14169974--14170014 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14169964 TGTCTATAGT
*
14169974 TATTGTGGGCTTCGTATCGA
1 TATTGTGGGCTTCGTACCGA
*
14169994 TATTGTGGGCTTCGTGCCGA
1 TATTGTGGGCTTCGTACCGA
14170014 T
1 T
14170015 TATAGACCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.17, G:0.32, T:0.39
Consensus pattern (20 bp):
TATTGTGGGCTTCGTACCGA
Found at i:14170063 original size:22 final size:22
Alignment explanation
Indices: 14170031--14170089 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
14170021 CCCCTTATAG
*
14170031 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
14170053 ATGGCTTTGTGCCATCTTGATT
1 ATGGCTTTGTGCCAACCTAAAT
*
14170075 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
14170090 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:14170277 original size:27 final size:27
Alignment explanation
Indices: 14170247--14170347 Score: 98
Period size: 27 Copynumber: 3.7 Consensus size: 27
14170237 ATTCTGTTAA
* *
14170247 GTGGCTTTGCCACATTATCTAATTCTG
1 GTGGCTATGCCACAATATCTAATTCTG
*
14170274 GTGGCTATGCCACAAATATCT-GTTCTG
1 GTGGCTATGCCAC-AATATCTAATTCTG
* *
14170301 GTGGCTCTGCCACAATATCT-ATATCTA
1 GTGGCTATGCCACAATATCTAAT-TCTG
* * *
14170328 GTGACTCTGTCACAATATCT
1 GTGGCTATGCCACAATATCT
14170348 GTTATGGCAG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 8 0.12
27 50 0.78
28 6 0.09
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTAATTCTG
Found at i:14170342 original size:54 final size:53
Alignment explanation
Indices: 14170247--14170350 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 53
14170237 ATTCTGTTAA
* * * *
14170247 GTGGCTTTGCCACATTATCTAATTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTAATTCTAGTGACTATGCCAC-AATATCTGTTCTG
* *
14170301 GTGGCTCTGCCACAATATCT-ATATCTAGTGACTCTGTCACAATATCTGTT
1 GTGGCTCTGCCACAATATCTAAT-TCTAGTGACTATGCCACAATATCTGTT
14170351 ATGGCAGCCA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
53 12 0.28
54 31 0.72
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTAATTCTAGTGACTATGCCACAATATCTGTTCTG
Found at i:14170520 original size:25 final size:25
Alignment explanation
Indices: 14170475--14170536 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 25
14170465 CATTCACATT
* * * *
14170475 CTGATTTTGATTCTTTTACCTGATA
1 CTGATTCTGATTCTGTCACCTAATA
*
14170500 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
*
14170525 TTGATTCTGATT
1 CTGATTCTGATT
14170537 TTGATTCTGG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:14170597 original size:6 final size:6
Alignment explanation
Indices: 14170586--14170637 Score: 50
Period size: 6 Copynumber: 8.7 Consensus size: 6
14170576 TGTCACCTAG
* * * * * *
14170586 TTCTGA TTCTGA TTCTAA TTGTGA CTCTGA TTCTAA TTCTCA TTTTGA
1 TTCTGA TTCTGA TTCTGA TTCTGA TTCTGA TTCTGA TTCTGA TTCTGA
14170634 TTCT
1 TTCT
14170638 AGTTCTGGTA
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.52
Consensus pattern (6 bp):
TTCTGA
Found at i:14170598 original size:31 final size:31
Alignment explanation
Indices: 14170494--14170605 Score: 102
Period size: 31 Copynumber: 3.6 Consensus size: 31
14170484 ATTCTTTTAC
* * *
14170494 CTGATACTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTAATTCTGTCACCTAGTT
* * * *
14170525 TTGATTCTGATTTTGATTCTGGTCA-AT-GTT
1 CTGATTCTGATTCTAATTCT-GTCACCTAGTT
* *
14170555 ACCTAATTCTGATTGTAATTCTGTCACCTAGTT
1 --CTGATTCTGATTCTAATTCTGTCACCTAGTT
14170588 CTGATTCTGATTCTAATT
1 CTGATTCTGATTCTAATT
14170606 GTGACTCTGA
Statistics
Matches: 64, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
30 2 0.03
31 38 0.59
32 21 0.33
33 3 0.05
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.46
Consensus pattern (31 bp):
CTGATTCTGATTCTAATTCTGTCACCTAGTT
Found at i:14172673 original size:27 final size:26
Alignment explanation
Indices: 14172640--14172930 Score: 219
Period size: 27 Copynumber: 10.8 Consensus size: 26
14172630 ATACCCCCAG
*
14172640 TTGTAAAATTACCAAAGTACCCCCGGT
1 TTGTAAAATTACCAAA-TACCCTCGGT
* * * *
14172667 TTATAAAATTACCGAAATATCGTC-GA
1 TTGTAAAATTACC-AAATACCCTCGGT
* ** *
14172693 TTATAAAATTAATAAAATACCCTCGAT
1 TTGTAAAATT-ACCAAATACCCTCGGT
* *
14172720 TTGTAAAATTATCGAAATACCCTCAGT
1 TTGTAAAATTA-CCAAATACCCTCGGT
* *
14172747 TTGTAAAA-TACTGAAATACCCTCGAT
1 TTGTAAAATTAC-CAAATACCCTCGGT
* **
14172773 TTGTAAAATTACTAAAATACCCTCGAC
1 TTGTAAAATTAC-CAAATACCCTCGGT
*
14172800 TTGTAAAATTACCAAAGTACCCCCGGT
1 TTGTAAAATTACCAAA-TACCCTCGGT
* * * *
14172827 TTATAAAATTACCCCAATATCCTCGAT
1 TTGTAAAATTA-CCAAATACCCTCGGT
* * *
14172854 TTGTAAAATTACCGAAATACCGT-TGA
1 TTGTAAAATTACC-AAATACCCTCGGT
*
14172880 TTGTAAAATTACTAAAATACCCTTCGGT
1 TTGTAAAATTAC-CAAATACCC-TCGGT
*
14172908 TTATAAAATTACCGAAATACCCT
1 TTGTAAAATTACC-AAATACCCT
14172931 TGTAGGGTAG
Statistics
Matches: 209, Mismatches: 42, Indels: 26
0.75 0.15 0.09
Matches are distributed among these distances:
25 1 0.00
26 66 0.32
27 115 0.55
28 27 0.13
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGGT
Found at i:14172754 original size:80 final size:80
Alignment explanation
Indices: 14172619--14172926 Score: 363
Period size: 80 Copynumber: 3.8 Consensus size: 80
14172609 CTAGCTTACC
* *
14172619 AAATTACTAAGATACCC-CCAGTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCGAA
1 AAATTACTAAAATACCCTCGA-TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCGAA
* *
14172683 ATATCGTCGA-TTATA
65 ATATCCTCGATTTGTA
* * * * * *
14172698 AAATTAATAAAATACCCTCGATTTGTAAAATTATCGAAA-TACCCTCAGTTTGTAAAA-TACTGA
1 AAATTACTAAAATACCCTCGA-TTGTAAAATTA-CCAAAGTACCCCCGGTTTATAAAATTACCGA
*
14172761 AATACCCTCGATTTGTA
64 AATATCCTCGATTTGTA
**
14172778 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCCCA
1 AAATTACTAAAATACCCTCGA-TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCGAA
14172843 ATATCCTCGATTTGTA
65 ATATCCTCGATTTGTA
** * * * * *
14172859 AAATTACCGAAATACCGTTGATTGTAAAATTACTAAAATACCCTTCGGTTTATAAAATTACCGAA
1 AAATTACTAAAATACCCTCGATTGTAAAATTACCAAAGTACCC-CCGGTTTATAAAATTACCGAA
14172924 ATA
65 ATA
14172927 CCCTTGTAGG
Statistics
Matches: 192, Mismatches: 31, Indels: 10
0.82 0.13 0.04
Matches are distributed among these distances:
79 33 0.17
80 98 0.51
81 61 0.32
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (80 bp):
AAATTACTAAAATACCCTCGATTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCGAAA
TATCCTCGATTTGTA
Found at i:14172915 original size:54 final size:53
Alignment explanation
Indices: 14172619--14172930 Score: 242
Period size: 53 Copynumber: 5.8 Consensus size: 53
14172609 CTAGCTTACC
* * * * * *
14172619 AAATTACTAAGATACCC-CCAGTTGTAAAATTACC-AAAGTACCCCCGGTTTATA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAA-TACCCTC-GATTGTA
** * * * ***
14172672 AAATTACCGAAATATCGTCGA-TTATAAAATTAATAAAATACCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTGTA
* *
14172725 AAATTA-TCGAAATACCCTC-AGTTTGTAAAA-TACTGAAATACCCTCGATTTGTA
1 AAATTACT-AAAATACCCTCGA-TTTGTAAAATTACCGAAATACCCTCGA-TTGTA
* * * *
14172778 AAATTACTAAAATACCCTCGACTTGTAAAATTACC-AAAGTACCCCCGGTTTATA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAA-TACCCTC-GATTGTA
*** * * *
14172832 AAATTACCCCAATATCCTCGATTTGTAAAATTACCGAAATACCGTTGATTGTA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTA
* *
14172885 AAATTACTAAAATACCCTTCGGTTTATAAAATTACCGAAATACCCT
1 AAATTACTAAAATACCC-TCGATTTGTAAAATTACCGAAATACCCT
14172931 TGTAGGGTAG
Statistics
Matches: 205, Mismatches: 41, Indels: 25
0.76 0.15 0.09
Matches are distributed among these distances:
52 2 0.01
53 113 0.55
54 86 0.42
55 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (53 bp):
AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTGTA
Found at i:14173513 original size:27 final size:27
Alignment explanation
Indices: 14172914--14173513 Score: 691
Period size: 27 Copynumber: 22.3 Consensus size: 27
14172904 CGGTTTATAA
*
14172914 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
14172941 AATTACTGAAATACCATTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14172968 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * **
14172995 AATTATCGAAATACCCTTATAACGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
14173022 AATTACTAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14173049 AATTAACGAAAT-CCCCTCTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14173075 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14173102 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
14173129 AATTATCGAAATACCATTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
14173156 AATTATTGAAATACCCATGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
14173183 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
14173210 AATTATTGAAATACCCCTATAGGGTAC
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
14173237 AATTATCGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14173264 TAA-TACCGAAATACCCTTGTAGGGTAG
1 -AATTACCGAAATACCCCTGTAGGGTAG
*
14173291 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
14173318 AATTATTGAAATACCCCTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14173345 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14173372 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14173399 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * **
14173426 AATTACTGAAATACCCTTGTACAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14173453 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
14173480 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
14173507 AATTACC
1 AATTACC
14173514 ATTTTTCCCC
Statistics
Matches: 491, Mismatches: 79, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
26 24 0.05
27 465 0.95
28 2 0.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:14174108 original size:27 final size:27
Alignment explanation
Indices: 14174078--14174151 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
14174068 TTCTGTTAAT
* *
14174078 TGGCTTTGCCACATTATCTGATTTTGG
1 TGGCTTTGCCACATTATCTGATTCTAG
*
14174105 TGGCTATGCCACAAATT-TCT-ATTCTAG
1 TGGCTTTGCCAC--ATTATCTGATTCTAG
* *
14174132 TGCCTTTGCCACAATATCTG
1 TGGCTTTGCCACATTATCTG
14174152 TATCTTGTGA
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
25 2 0.05
26 3 0.08
27 26 0.70
28 3 0.08
29 3 0.08
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (27 bp):
TGGCTTTGCCACATTATCTGATTCTAG
Found at i:14174361 original size:6 final size:6
Alignment explanation
Indices: 14174352--14174475 Score: 56
Period size: 6 Copynumber: 20.3 Consensus size: 6
14174342 CTGTCACCTA
* * *
14174352 ATTCTG ATTCTG ATTTTG ATTCTG GTTCTG -TTACCTG ATTCTG ATTCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * * * * *
14174401 ATTTTG -TCACCTA ATTCTG ATTCTA ATTCTA ATTGTG ACTCTG ATTCTA
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
14174450 ATACTC ATTTTG ATTCTTG -TTCTG AT
1 ATTCTG ATTCTG ATTC-TG ATTCTG AT
14174476 AATGTTTCTT
Statistics
Matches: 86, Mismatches: 24, Indels: 16
0.68 0.19 0.13
Matches are distributed among these distances:
5 5 0.06
6 72 0.84
7 6 0.07
8 3 0.03
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:14174374 original size:37 final size:37
Alignment explanation
Indices: 14174333--14174406 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
14174323 CTTGACACTA
*
14174333 ATTCTGATTCTGTCACCTAATTCTGATTCTGATTTTG
1 ATTCTGATTCTGTCACCTAATTCTGATTCTAATTTTG
* * *
14174370 ATTCTGGTTCTGTTACCTGATTCTGATTCTAATTTTG
1 ATTCTGATTCTGTCACCTAATTCTGATTCTAATTTTG
14174407 TCACCTAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.50
Consensus pattern (37 bp):
ATTCTGATTCTGTCACCTAATTCTGATTCTAATTTTG
Found at i:14174375 original size:31 final size:31
Alignment explanation
Indices: 14174333--14174430 Score: 94
Period size: 31 Copynumber: 3.2 Consensus size: 31
14174323 CTTGACACTA
14174333 ATTCTGATTCTGTCACCTAATTCTGATTCTG
1 ATTCTGATTCTGTCACCTAATTCTGATTCTG
* * *
14174364 ATTTTGATTCTGGT--TCT-GTTACCTGATTCTG
1 ATTCTGATTCT-GTCACCTAATT--CTGATTCTG
* * *
14174395 ATTCTAATTTTGTCACCTAATTCTGATTCTA
1 ATTCTGATTCTGTCACCTAATTCTGATTCTG
14174426 ATTCT
1 ATTCT
14174431 AATTGTGACT
Statistics
Matches: 52, Mismatches: 9, Indels: 12
0.71 0.12 0.16
Matches are distributed among these distances:
29 2 0.04
30 4 0.08
31 40 0.77
32 4 0.08
33 2 0.04
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGTCACCTAATTCTGATTCTG
Found at i:14174409 original size:62 final size:62
Alignment explanation
Indices: 14174306--14174424 Score: 166
Period size: 62 Copynumber: 1.9 Consensus size: 62
14174296 ATTCACATTC
* * *
14174306 TGATTTTGATTCTGTTACTTGACACTAATTCTGATTCTGTCACCTAATTCTGATTCTGATTT
1 TGATTCTGATTCTGTTACCTGACACTAATTCTAATTCTGTCACCTAATTCTGATTCTGATTT
* ** * *
14174368 TGATTCTGGTTCTGTTACCTGATTCTGATTCTAATTTTGTCACCTAATTCTGATTCT
1 TGATTCTGATTCTGTTACCTGACACTAATTCTAATTCTGTCACCTAATTCTGATTCT
14174425 AATTCTAATT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 49 1.00
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.49
Consensus pattern (62 bp):
TGATTCTGATTCTGTTACCTGACACTAATTCTAATTCTGTCACCTAATTCTGATTCTGATTT
Found at i:14174412 original size:25 final size:25
Alignment explanation
Indices: 14174361--14174430 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
14174351 AATTCTGATT
* ** *
14174361 CTGATTTTGATTCTGGTTCTGTTAC
1 CTGATTCTGATTCTAATTCTGTCAC
*
14174386 CTGATTCTGATTCTAATTTTGTCAC
1 CTGATTCTGATTCTAATTCTGTCAC
*
14174411 CTAATTCTGATTCTAATTCT
1 CTGATTCTGATTCTAATTCT
14174431 AATTGTGACT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.50
Consensus pattern (25 bp):
CTGATTCTGATTCTAATTCTGTCAC
Found at i:14174484 original size:18 final size:17
Alignment explanation
Indices: 14174463--14174496 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14174453 CTCATTTTGA
*
14174463 TTCTTGTTCTGATAATGT
1 TTCTTATTCTG-TAATGT
14174481 TTCTTATTCTGTAATG
1 TTCTTATTCTGTAATG
14174497 GGCTAAAGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.18, C:0.12, G:0.15, T:0.56
Consensus pattern (17 bp):
TTCTTATTCTGTAATGT
Found at i:14185118 original size:10 final size:10
Alignment explanation
Indices: 14185105--14185142 Score: 58
Period size: 10 Copynumber: 3.6 Consensus size: 10
14185095 AAAAGGGATC
14185105 AAAATTAATT
1 AAAATTAATT
14185115 AAAATTAATTAT
1 AAAATTAA-T-T
14185127 AAAATTAATT
1 AAAATTAATT
14185137 AAAATT
1 AAAATT
14185143 CAACGTGTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 15 0.58
11 2 0.08
12 9 0.35
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
AAAATTAATT
Found at i:14185131 original size:12 final size:12
Alignment explanation
Indices: 14185105--14185137 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
14185095 AAAAGGGATC
14185105 AAAATTAA-T-T
1 AAAATTAATTAT
14185115 AAAATTAATTAT
1 AAAATTAATTAT
14185127 AAAATTAATTA
1 AAAATTAATTA
14185138 AAATTCAACG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 8 0.38
11 1 0.05
12 12 0.57
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
AAAATTAATTAT
Found at i:14193775 original size:40 final size:40
Alignment explanation
Indices: 14193731--14193926 Score: 225
Period size: 40 Copynumber: 4.9 Consensus size: 40
14193721 GGATATAGCT
* * *
14193731 ACTCGCTCGAATGCCTTCGGGACATAGCCCGGTTATGGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGTTATAGTA
* * * *
14193771 ACTCGCACAAATGCCTTCGGGGCTTAGCCCAGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGTTATAGTA
*
14193811 ACTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGTTATAGTA
* * * *
14193851 ACTCGCACAAATGCCTTCGGGGCTTAGCCCGG-AATTAGTC
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGTTA-TAGTA
* * *
14193891 ACTAC-CACAAATGCCTTCAGGACTTAGCTCGGTTAT
1 ACT-CGCACAAATGCCTTCGGGACATAGCCCGGTTAT
14193927 CATCCAAATT
Statistics
Matches: 132, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 129 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAGCCCGGTTATAGTA
Found at i:14193855 original size:80 final size:79
Alignment explanation
Indices: 14193722--14193926 Score: 288
Period size: 80 Copynumber: 2.6 Consensus size: 79
14193712 AATTTAACCG
* *
14193722 GATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCCGGTTATGGTAACTCGCACAAATGCCT
1 GATATAG-TACTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCT
14193787 TCGGGGCTTAGCCCA
65 TCGGGGCTTAGCCCA
14193802 GATATAGTAACTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCT
1 GATATAGT-ACTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCT
*
14193867 TCGGGGCTTAGCCCG
65 TCGGGGCTTAGCCCA
* * * *
14193882 GA-ATTAGTCACTAC-CACAAATGCCTTCAGGACTTAGCTCGGTTAT
1 GATA-TAGT-ACT-CGCACGAATGCCTTCGGGACATAGCCCGGTTAT
14193927 CATCCAAATT
Statistics
Matches: 114, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
79 2 0.02
80 111 0.97
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (79 bp):
GATATAGTACTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTT
CGGGGCTTAGCCCA
Found at i:14195417 original size:40 final size:40
Alignment explanation
Indices: 14195319--14195741 Score: 584
Period size: 40 Copynumber: 10.6 Consensus size: 40
14195309 TCCTCGTTCA
* * * * *
14195319 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
14195358 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14195398 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14195438 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14195478 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14195518 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
14195558 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
14195598 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
14195638 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
** * * * *
14195678 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
14195718 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
14195742 CAGCATTCAA
Statistics
Matches: 355, Mismatches: 23, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
39 40 0.11
40 303 0.85
41 12 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:14195750 original size:41 final size:41
Alignment explanation
Indices: 14195673--14195750 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
14195663 TTTGTATCTC
* * *
14195673 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
14195714 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
14195751 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:14196831 original size:16 final size:16
Alignment explanation
Indices: 14196812--14196842 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14196802 CTTCTTCACT
14196812 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
14196828 TACTTACTTACTTAA
1 TACTCACTTACTTAA
14196843 TCAAATTTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:14196848 original size:20 final size:20
Alignment explanation
Indices: 14196809--14196848 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
14196799 AAACTTCTTC
* *
14196809 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
14196829 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
14196849 TTCTTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:14197215 original size:55 final size:53
Alignment explanation
Indices: 14197034--14197288 Score: 245
Period size: 55 Copynumber: 4.8 Consensus size: 53
14197024 ACACGGGTAC
* * * *
14197034 CTTACCATTGCCATG-ATTGTCATGGTCTTACATGGTA---T-CCTT-TTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG-AA
* * *
14197082 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCGTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAA
* * *
14197135 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AA
* * * * * *
14197190 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAGAC
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAA
*
14197244 CTTACCAACTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTG
1 CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTG
14197289 AACCCTAATG
Statistics
Matches: 171, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
48 15 0.09
49 20 0.12
52 2 0.01
53 44 0.26
54 14 0.08
55 74 0.43
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAA
Found at i:14197224 original size:108 final size:110
Alignment explanation
Indices: 14197080--14197280 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
14197070 ATCCTTTTGA
* * *
14197080 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCGTTATGA-A-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAGACCTCACCAA
14197143 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 CTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
14197188 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAGACCTTACCAAC
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAGACCTCACCAAC
14197253 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
14197281 TATCCTTGAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 2 0.02
108 47 0.56
109 7 0.08
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAGACCTCACCAAC
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:14197835 original size:55 final size:55
Alignment explanation
Indices: 14197769--14197874 Score: 203
Period size: 55 Copynumber: 1.9 Consensus size: 55
14197759 CATCAAATTC
14197769 ACACTCTAACATGTACTTATGACTATTAGGTATTTTTACCGATTAAGCCCTAAGT
1 ACACTCTAACATGTACTTATGACTATTAGGTATTTTTACCGATTAAGCCCTAAGT
*
14197824 ACACTCTAACATGTACTTATGACTATTAGGTATTTTTGCCGATTAAGCCCT
1 ACACTCTAACATGTACTTATGACTATTAGGTATTTTTACCGATTAAGCCCT
14197875 TTTACTCGTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 50 1.00
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (55 bp):
ACACTCTAACATGTACTTATGACTATTAGGTATTTTTACCGATTAAGCCCTAAGT
Found at i:14202617 original size:16 final size:16
Alignment explanation
Indices: 14202598--14202628 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14202588 CTTCTTCACT
14202598 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
14202614 TACTTACTTACTTAA
1 TACTCACTTACTTAA
14202629 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:14202634 original size:20 final size:20
Alignment explanation
Indices: 14202595--14202634 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
14202585 AAACTTCTTC
* *
14202595 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
14202615 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
14202635 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:14203022 original size:55 final size:54
Alignment explanation
Indices: 14202820--14203075 Score: 256
Period size: 55 Copynumber: 4.8 Consensus size: 54
14202810 ACGAGGGTAC
* * * * *
14202820 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* * *
14202869 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAG
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* * *
14202922 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AA
* * * * * * *
14202977 CTTATCGATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAGAC
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
* *
14203031 CTTACCAACTTCCATGCCTTGGCATGGTCTTACATGGTATCCTTG
1 CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
14203076 AACCCTAATG
Statistics
Matches: 169, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
49 40 0.24
52 4 0.02
53 43 0.25
54 8 0.05
55 72 0.43
56 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA
Found at i:14204975 original size:11 final size:11
Alignment explanation
Indices: 14204959--14204983 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14204949 TTATATATAC
14204959 TAATAAAATAA
1 TAATAAAATAA
14204970 TAATAAAATAA
1 TAATAAAATAA
14204981 TAA
1 TAA
14204984 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Done.