Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 48 of 205
Found at i:14205943 original size:42 final size:42
Alignment explanation
Indices: 14205891--14206009 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 42
14205881 CTCATAGCAC
* *
14205891 CATACCAATGCCATATCCCAGATATGGTCTTACAT-AGGATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACATGAAG-TCT
* * *
14205933 CATATCAATGCCACTAGCCCAGCTATGGGCTTACATGAAGTCT
1 CATATCAATGCCA-TATCCCAGATATGGTCTTACATGAAGTCT
* * * * *
14205976 CATATCGACGCCATATTCTAGATATGGTTTTACA
1 CATATCAATGCCATATCCCAGATATGGTCTTACA
14206010 CGTAATCTCA
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
42 27 0.44
43 33 0.53
44 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACATGAAGTCT
Found at i:14215671 original size:17 final size:16
Alignment explanation
Indices: 14215634--14215670 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
14215624 AAATATTTAA
14215634 TTTTTGAATTTGATAT
1 TTTTTGAATTTGATAT
14215650 TTTTTGAATTTGATAT
1 TTTTTGAATTTGATAT
14215666 TTTTT
1 TTTTT
14215671 TCTCTACATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.68
Consensus pattern (16 bp):
TTTTTGAATTTGATAT
Found at i:14215930 original size:19 final size:18
Alignment explanation
Indices: 14215906--14215953 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
14215896 AAATTCTAAG
* *
14215906 AAATTATAATAAATATTTT
1 AAATTATAA-AAATAATAT
14215925 AAATTAT-AAAATAATAT
1 AAATTATAAAAATAATAT
14215942 AAATTATAAAAA
1 AAATTATAAAAA
14215954 ATTAAGATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 14 0.54
18 5 0.19
19 7 0.27
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAATTATAAAAATAATAT
Found at i:14217830 original size:22 final size:22
Alignment explanation
Indices: 14217772--14217830 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
14217762 GAATGGTATC
14217772 TACAAATCAAATCTCTAAGATT
1 TACAAATCAAATCTCTAAGATT
*
14217794 TACAAAATCATATCTCCTAAGA-T
1 TAC-AAATCAAATCT-CTAAGATT
*
14217817 TACATATCAAATCT
1 TACAAATCAAATCT
14217831 ACGATTGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 12 0.38
23 14 0.44
24 6 0.19
ACGTcount: A:0.44, C:0.20, G:0.03, T:0.32
Consensus pattern (22 bp):
TACAAATCAAATCTCTAAGATT
Found at i:14220447 original size:27 final size:27
Alignment explanation
Indices: 14220416--14220593 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
14220406 TAAATTGTAC
14220416 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
14220443 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14220469 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
14220497 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
14220525 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14220552 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
14220579 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14220594 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:14220530 original size:82 final size:81
Alignment explanation
Indices: 14220417--14220572 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
14220407 AAATTGTACA
* *
14220417 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
14220481 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
14220498 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
14220563 TGCGAGTTGA
65 TGCGAATTGA
14220573 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:14220584 original size:82 final size:81
Alignment explanation
Indices: 14220413--14220593 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
14220403 GATTAAATTG
* *
14220413 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
14220478 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
14220494 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
14220558 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
14220576 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
14220594 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:14220604 original size:27 final size:27
Alignment explanation
Indices: 14220498--14220604 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
14220488 TGACCATGCG
* * * *
14220498 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
14220526 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
14220553 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
14220580 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
14220605 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:14222248 original size:22 final size:22
Alignment explanation
Indices: 14222190--14222248 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
14222180 GAATGGTATC
14222190 TACAAATCAAATCTCTAAGATT
1 TACAAATCAAATCTCTAAGATT
*
14222212 TACAAAATCATATCTCCTAAGA-T
1 TAC-AAATCAAATCT-CTAAGATT
*
14222235 TACATATCAAATCT
1 TACAAATCAAATCT
14222249 ACGATTGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 12 0.38
23 14 0.44
24 6 0.19
ACGTcount: A:0.44, C:0.20, G:0.03, T:0.32
Consensus pattern (22 bp):
TACAAATCAAATCTCTAAGATT
Found at i:14227744 original size:22 final size:22
Alignment explanation
Indices: 14227687--14227744 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
14227677 GAATGGTATC
14227687 TACAAATC-AATCTCTAAGATT
1 TACAAATCAAATCTCTAAGATT
*
14227708 TACAAAATCATATCTCCTAAGA-T
1 TAC-AAATCAAATCT-CTAAGATT
*
14227731 TACATATCAAATCT
1 TACAAATCAAATCT
14227745 ACGATTGTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 3 0.10
22 14 0.45
23 8 0.26
24 6 0.19
ACGTcount: A:0.43, C:0.21, G:0.03, T:0.33
Consensus pattern (22 bp):
TACAAATCAAATCTCTAAGATT
Found at i:14228799 original size:13 final size:13
Alignment explanation
Indices: 14228783--14228816 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
14228773 GTATTCAATT
14228783 CAATCCAATTACC
1 CAATCCAATTACC
*
14228796 CAATCTAATTACC
1 CAATCCAATTACC
*
14228809 CAACCCAA
1 CAATCCAA
14228817 CTCAATCATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.41, C:0.38, G:0.00, T:0.21
Consensus pattern (13 bp):
CAATCCAATTACC
Found at i:14228944 original size:9 final size:9
Alignment explanation
Indices: 14228932--14228983 Score: 77
Period size: 9 Copynumber: 5.8 Consensus size: 9
14228922 TCAATTAGGT
14228932 TAATTCGAG
1 TAATTCGAG
*
14228941 TAATTCGAT
1 TAATTCGAG
*
14228950 TAATTCGGG
1 TAATTCGAG
14228959 TAATTCGAG
1 TAATTCGAG
*
14228968 TAATTCGGG
1 TAATTCGAG
14228977 TAATTCG
1 TAATTCG
14228984 GTTAATTTGG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 38 1.00
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.37
Consensus pattern (9 bp):
TAATTCGAG
Found at i:14228952 original size:18 final size:18
Alignment explanation
Indices: 14228931--14229008 Score: 95
Period size: 18 Copynumber: 4.3 Consensus size: 18
14228921 TTCAATTAGG
*
14228931 TTAATTCGAGTAATTCGA
1 TTAATTCGGGTAATTCGA
14228949 TTAATTCGGGTAATTCGA
1 TTAATTCGGGTAATTCGA
* *
14228967 GTAATTCGGGTAATTCGG
1 TTAATTCGGGTAATTCGA
* *
14228985 TTAATT-TGGTGAATTCGG
1 TTAATTCGGGT-AATTCGA
14229003 TTAATT
1 TTAATT
14229009 TTTAACCAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
17 3 0.06
18 51 0.94
ACGTcount: A:0.27, C:0.09, G:0.23, T:0.41
Consensus pattern (18 bp):
TTAATTCGGGTAATTCGA
Found at i:14228962 original size:27 final size:27
Alignment explanation
Indices: 14228932--14229008 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
14228922 TCAATTAGGT
*
14228932 TAATTCGAGTAATTCGATTAATTCGGG
1 TAATTCGAGTAATTCGGTTAATTCGGG
* *
14228959 TAATTCGAGTAATTCGGGTAATTCGGT
1 TAATTCGAGTAATTCGGTTAATTCGGG
*
14228986 TAATTTG-GTGAATTCGGTTAATT
1 TAATTCGAGT-AATTCGGTTAATT
14229009 TTTAACCAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 2 0.05
27 42 0.95
ACGTcount: A:0.27, C:0.09, G:0.23, T:0.40
Consensus pattern (27 bp):
TAATTCGAGTAATTCGGTTAATTCGGG
Found at i:14228984 original size:9 final size:9
Alignment explanation
Indices: 14228932--14229008 Score: 75
Period size: 9 Copynumber: 8.6 Consensus size: 9
14228922 TCAATTAGGT
*
14228932 TAATTCGAG
1 TAATTCGGG
**
14228941 TAATTCGAT
1 TAATTCGGG
14228950 TAATTCGGG
1 TAATTCGGG
*
14228959 TAATTCGAG
1 TAATTCGGG
14228968 TAATTCGGG
1 TAATTCGGG
*
14228977 TAATTCGGT
1 TAATTCGGG
*
14228986 TAATT-TGG
1 TAATTCGGG
*
14228994 TGAATTCGGT
1 T-AATTCGGG
14229004 TAATT
1 TAATT
14229009 TTTAACCAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
8 2 0.04
9 52 0.93
10 2 0.04
ACGTcount: A:0.27, C:0.09, G:0.23, T:0.40
Consensus pattern (9 bp):
TAATTCGGG
Found at i:14254950 original size:24 final size:24
Alignment explanation
Indices: 14254871--14254935 Score: 121
Period size: 24 Copynumber: 2.7 Consensus size: 24
14254861 AAGCTCATAC
14254871 GAGCCAATATCGGGAAGTTTAAGT
1 GAGCCAATATCGGGAAGTTTAAGT
14254895 GAGCCAATATCGGGAAGTTTAAGT
1 GAGCCAATATCGGGAAGTTTAAGT
*
14254919 GAGCCAATATCGAGAAG
1 GAGCCAATATCGGGAAG
14254936 CTTCGGAGAG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (24 bp):
GAGCCAATATCGGGAAGTTTAAGT
Found at i:14264953 original size:9 final size:9
Alignment explanation
Indices: 14264939--14264996 Score: 71
Period size: 9 Copynumber: 6.4 Consensus size: 9
14264929 TTTGGTTAAA
*
14264939 AATTAATCG
1 AATTAACCG
14264948 AATTAACCG
1 AATTAACCG
14264957 AATTAACCG
1 AATTAACCG
* *
14264966 GATTACCCG
1 AATTAACCG
*
14264975 AATTACCCG
1 AATTAACCG
*
14264984 AATTAATCG
1 AATTAACCG
14264993 AATT
1 AATT
14264997 GAATCCCTAC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:14265621 original size:16 final size:16
Alignment explanation
Indices: 14265600--14265635 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
14265590 TTTGGTTCGC
14265600 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
14265616 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
14265632 TGTA
1 TGTA
14265636 ATAGTAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:14265893 original size:18 final size:17
Alignment explanation
Indices: 14265872--14265906 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14265862 TTATTATTAA
*
14265872 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
14265890 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
14265907 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:14265993 original size:26 final size:26
Alignment explanation
Indices: 14265964--14266054 Score: 94
Period size: 26 Copynumber: 3.4 Consensus size: 26
14265954 TGATACTGTA
* *
14265964 AAATATAAATTAACATAATTATTATT
1 AAATATAATTTAAAATAATTATTATT
* *
14265990 AAATATATTTTAATTAA-AATATATGATT
1 AAATATAATTTAA--AATAAT-TATTATT
* *
14266018 TAATACAATTTAAAATAATTATTATT
1 AAATATAATTTAAAATAATTATTATT
14266044 AAATATAATTT
1 AAATATAATTT
14266055 CATAAAATGT
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
26 28 0.55
27 6 0.12
28 17 0.33
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (26 bp):
AAATATAATTTAAAATAATTATTATT
Found at i:14269643 original size:23 final size:23
Alignment explanation
Indices: 14269573--14269645 Score: 62
Period size: 23 Copynumber: 3.3 Consensus size: 23
14269563 TTATATTAAT
14269573 ATTATATAATCAAAATGATTTTA
1 ATTATATAATCAAAATGATTTTA
* * * * ***
14269596 ATAATAT-TTC-AATTAAAAAT-
1 ATTATATAATCAAAATGATTTTA
14269616 ATTATATAATCAAAATGATTTTA
1 ATTATATAATCAAAATGATTTTA
14269639 ATTATAT
1 ATTATAT
14269646 TTTAATATAC
Statistics
Matches: 33, Mismatches: 14, Indels: 6
0.62 0.26 0.11
Matches are distributed among these distances:
20 6 0.18
21 7 0.21
22 7 0.21
23 13 0.39
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (23 bp):
ATTATATAATCAAAATGATTTTA
Found at i:14270772 original size:52 final size:52
Alignment explanation
Indices: 14270715--14271052 Score: 270
Period size: 52 Copynumber: 6.0 Consensus size: 52
14270705 GGTGTTAACT
14270715 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
* ** * *
14270767 CATTTCAAACATTTATCAGTGAGCAAACATTTCAAAGCATTCAA-AGT-TGAAGTAGTAATAGCA
1 CATTTCAAACA-TT-TC----A--AAGCA-TTCAAAG--TT-AACAGTACCAA--ATTAACAGCA
14270830 C
52 C
*
14270831 CATTTCAAACATTTCAAAGTATTCAAAGTTAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
* ** *
14270883 CATTTCAAACATTTATCAGTGAGCAAACATTTCAAAGCATTCAA-AGT-TGAAGTAGTAACAGCA
1 CATTTCAAACA-TT-TC----A--AAGCA-TTCAAAG--TT-AACAGTACCAA--ATTAACAGCA
14270946 C
52 C
* *
14270947 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAATAACAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
**
14270999 CATTTCAAACATTTCAAAGCATTCAAAAATAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
14271051 CA
1 CA
14271053 AGACTATGCA
Statistics
Matches: 228, Mismatches: 26, Indels: 64
0.72 0.08 0.20
Matches are distributed among these distances:
52 93 0.41
53 14 0.06
54 8 0.04
55 14 0.06
56 7 0.03
58 4 0.02
60 7 0.03
61 14 0.06
62 8 0.04
63 14 0.06
64 45 0.20
ACGTcount: A:0.44, C:0.21, G:0.09, T:0.26
Consensus pattern (52 bp):
CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
Found at i:14270919 original size:116 final size:116
Alignment explanation
Indices: 14270715--14271012 Score: 560
Period size: 116 Copynumber: 2.6 Consensus size: 116
14270705 GGTGTTAACT
14270715 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATT
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATT
*
14270780 TATCAGTGAGCAAACATTTCAAAGCATTCAAAGTTGAAGTAGTAATAGCAC
66 TATCAGTGAGCAAACATTTCAAAGCATTCAAAGTTGAAGTAGTAACAGCAC
*
14270831 CATTTCAAACATTTCAAAGTATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATT
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATT
14270896 TATCAGTGAGCAAACATTTCAAAGCATTCAAAGTTGAAGTAGTAACAGCAC
66 TATCAGTGAGCAAACATTTCAAAGCATTCAAAGTTGAAGTAGTAACAGCAC
* *
14270947 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAATAACACCATTTCAAACATT
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATT
14271012 T
66 T
14271013 CAAAGCATTC
Statistics
Matches: 177, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
116 177 1.00
ACGTcount: A:0.43, C:0.20, G:0.10, T:0.28
Consensus pattern (116 bp):
CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATT
TATCAGTGAGCAAACATTTCAAAGCATTCAAAGTTGAAGTAGTAACAGCAC
Found at i:14271266 original size:21 final size:22
Alignment explanation
Indices: 14271223--14271277 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
14271213 AAGCAGATGG
14271223 AGCCACTGCAAATAAATTATAT
1 AGCCACTGCAAATAAATTATAT
* *
14271245 AGCCACTGCAAA-CAATTGTAT
1 AGCCACTGCAAATAAATTATAT
14271266 AGCCACATGCAA
1 AGCCAC-TGCAA
14271278 TGGGGGGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 13 0.43
22 17 0.57
ACGTcount: A:0.42, C:0.24, G:0.13, T:0.22
Consensus pattern (22 bp):
AGCCACTGCAAATAAATTATAT
Found at i:14277640 original size:43 final size:43
Alignment explanation
Indices: 14277550--14277646 Score: 108
Period size: 43 Copynumber: 2.3 Consensus size: 43
14277540 TGGTTTGTTA
** *
14277550 GATGATGCACTATATGTGCCTGTATATTTGCTTTGGTTCGTCC
1 GATGATGCACTATATGTGCCTGTATATTCACTTTGGTTCATCC
* * *
14277593 GATGATGCACTATGTGTG-CTAGTATATTCAC-TTGGATTTATCT
1 GATGATGCACTATATGTGCCT-GTATATTCACTTTGG-TTCATCC
14277636 GATGATGCACT
1 GATGATGCACT
14277647 GCGTTGCCAG
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 6 0.13
43 40 0.87
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.40
Consensus pattern (43 bp):
GATGATGCACTATATGTGCCTGTATATTCACTTTGGTTCATCC
Found at i:14279087 original size:13 final size:13
Alignment explanation
Indices: 14279069--14279145 Score: 104
Period size: 13 Copynumber: 5.8 Consensus size: 13
14279059 TGCAAACATT
14279069 AAGAAAGAAAAGA
1 AAGAAAGAAAAGA
*
14279082 AAGAAAGAAAATA
1 AAGAAAGAAAAGA
14279095 AAGAAAGAAAAGA
1 AAGAAAGAAAAGA
14279108 AA-AAGAGAAAAGA
1 AAGAA-AGAAAAGA
14279121 AAGAAA-ATAAAGA
1 AAGAAAGA-AAAGA
14279134 AAGAAAAGAAAA
1 AAG-AAAGAAAA
14279146 AGAGAAAGCT
Statistics
Matches: 57, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
12 3 0.05
13 45 0.79
14 8 0.14
15 1 0.02
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (13 bp):
AAGAAAGAAAAGA
Found at i:14279120 original size:35 final size:35
Alignment explanation
Indices: 14279081--14279152 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
14279071 GAAAGAAAAG
14279081 AAAGAAAGAAAATAAAGAAAGAAAAGAAAAAGAGA
1 AAAGAAAGAAAATAAAGAAAGAAAAGAAAAAGAGA
14279116 AAAGAAAGAAAATAAAGAAAGAAAAGAAAAAGAGA
1 AAAGAAAGAAAATAAAGAAAGAAAAGAAAAAGAGA
14279151 AA
1 AA
14279153 GCTTATGACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (35 bp):
AAAGAAAGAAAATAAAGAAAGAAAAGAAAAAGAGA
Found at i:14279151 original size:17 final size:17
Alignment explanation
Indices: 14279069--14279153 Score: 102
Period size: 17 Copynumber: 4.9 Consensus size: 17
14279059 TGCAAACATT
14279069 AAGAAAGAAAAGAAAG-A
1 AAGAAA-AAAAGAAAGAA
14279086 AAGAAAATAAAGAAAGAA
1 AAGAAAA-AAAGAAAGAA
*
14279104 AAGAAAAAGAGAAA-AGA
1 AAGAAAAAAAGAAAGA-A
14279121 AAGAAAATAAAGAAAGAA
1 AAGAAAA-AAAGAAAGAA
*
14279139 AAGAAAAAGAGAAAG
1 AAGAAAAAAAGAAAG
14279154 CTTATGACTA
Statistics
Matches: 60, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
16 2 0.03
17 35 0.58
18 22 0.37
19 1 0.02
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.02
Consensus pattern (17 bp):
AAGAAAAAAAGAAAGAA
Found at i:14280332 original size:6 final size:6
Alignment explanation
Indices: 14280321--14280357 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
14280311 GTCATTTATA
14280321 TATATG TATATG TATATG TATATG TATATG TATATG T
1 TATATG TATATG TATATG TATATG TATATG TATATG T
14280358 TTGCGGTTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.51
Consensus pattern (6 bp):
TATATG
Found at i:14280498 original size:35 final size:36
Alignment explanation
Indices: 14280452--14280524 Score: 130
Period size: 35 Copynumber: 2.1 Consensus size: 36
14280442 TAGCTACATG
14280452 TTAGTTTAATATTGGCGAATTTAGTATG-ATAAAAT
1 TTAGTTTAATATTGGCGAATTTAGTATGAATAAAAT
*
14280487 TTAGTTTAATATTGGTGAATTTAGTATGAATAAAAT
1 TTAGTTTAATATTGGCGAATTTAGTATGAATAAAAT
14280523 TT
1 TT
14280525 GATTTGGATG
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
35 27 0.75
36 9 0.25
ACGTcount: A:0.37, C:0.01, G:0.16, T:0.45
Consensus pattern (36 bp):
TTAGTTTAATATTGGCGAATTTAGTATGAATAAAAT
Found at i:14284555 original size:3 final size:3
Alignment explanation
Indices: 14284547--14284711 Score: 330
Period size: 3 Copynumber: 55.0 Consensus size: 3
14284537 TGGGTAATAA
14284547 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
14284595 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
14284643 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
14284691 AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG
14284712 TTGTTGGACA
Statistics
Matches: 162, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 162 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:14291366 original size:27 final size:27
Alignment explanation
Indices: 14291328--14291382 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
14291318 TTAATTAAGA
14291328 AAATGCTTGAAGATCTAGATAACAATT
1 AAATGCTTGAAGATCTAGATAACAATT
14291355 AAATGCTTGAAGATCTAGATAACAATT
1 AAATGCTTGAAGATCTAGATAACAATT
14291382 A
1 A
14291383 TCCAAAGGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.45, C:0.11, G:0.15, T:0.29
Consensus pattern (27 bp):
AAATGCTTGAAGATCTAGATAACAATT
Found at i:14295228 original size:20 final size:20
Alignment explanation
Indices: 14295200--14295238 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14295190 AGGCCAAAAT
14295200 AAAAATTGACATACATTTTC
1 AAAAATTGACATACATTTTC
* *
14295220 AAAATTTGACATTCATTTT
1 AAAAATTGACATACATTTT
14295239 TACTTTAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.13, G:0.05, T:0.41
Consensus pattern (20 bp):
AAAAATTGACATACATTTTC
Found at i:14299556 original size:21 final size:21
Alignment explanation
Indices: 14299532--14299597 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
14299522 CCTTGTTTGT
14299532 ACTTCGATACCCCTGAATTAC
1 ACTTCGATACCCCTGAATTAC
** **
14299553 ACTTAC-ATACCCC-GGTTTGT
1 ACTT-CGATACCCCTGAATTAC
* *
14299573 ACTTTGATACCCTTGAATTAC
1 ACTTCGATACCCCTGAATTAC
14299594 ACTT
1 ACTT
14299598 ATGTGCCCCT
Statistics
Matches: 32, Mismatches: 10, Indels: 6
0.67 0.21 0.12
Matches are distributed among these distances:
20 13 0.41
21 18 0.56
22 1 0.03
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.35
Consensus pattern (21 bp):
ACTTCGATACCCCTGAATTAC
Found at i:14299571 original size:41 final size:41
Alignment explanation
Indices: 14299506--14299754 Score: 275
Period size: 41 Copynumber: 6.1 Consensus size: 41
14299496 AAAATTGATC
* *
14299506 AATTGCACTTACGTGCCCTTGTTTGTACTTCGATACCCCTG
1 AATTGCACTTACGTGCCCCTGTTTGTACTTCGATACCCCTA
* * * * * * *
14299547 AATTACACTTACATACCCCGGTTTGTACTTTGATACCCTTG
1 AATTGCACTTACGTGCCCCTGTTTGTACTTCGATACCCCTA
* * * * *
14299588 AATTACACTTATGTGCCCCTATTTGTACTTTGGTACCCCTA
1 AATTGCACTTACGTGCCCCTGTTTGTACTTCGATACCCCTA
* * ** *
14299629 AATTGCACTTACGTGCCCCTTTTTGTACTTCGGTACCTTTT
1 AATTGCACTTACGTGCCCCTGTTTGTACTTCGATACCCCTA
*
14299670 AATTGCACTTATGTGCCCCTGTTTGTACTTC-AGTACCCCTA
1 AATTGCACTTACGTGCCCCTGTTTGTACTTCGA-TACCCCTA
* * *
14299711 AATTGCACATACGTGCCCCTGTTAGTACTACGATACCCCTA
1 AATTGCACTTACGTGCCCCTGTTTGTACTTCGATACCCCTA
14299752 AAT
1 AAT
14299755 ATACTTTTCT
Statistics
Matches: 174, Mismatches: 32, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
41 173 0.99
42 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.14, T:0.37
Consensus pattern (41 bp):
AATTGCACTTACGTGCCCCTGTTTGTACTTCGATACCCCTA
Found at i:14299626 original size:20 final size:20
Alignment explanation
Indices: 14299603--14299710 Score: 56
Period size: 20 Copynumber: 5.3 Consensus size: 20
14299593 CACTTATGTG
*
14299603 CCCCTATTTGTACTTTGGTA
1 CCCCTATTTGTACTTAGGTA
* * * *
14299623 CCCCTAAATTGCACTTACGTG
1 CCCCT-ATTTGTACTTAGGTA
* *
14299644 CCCCTTTTTGTACTTCGGTA
1 CCCCTATTTGTACTTAGGTA
** * * * *
14299664 CCTTTTAATTGCACTTATGTG
1 CC-CCTATTTGTACTTAGGTA
*
14299685 CCCCTGTTTGTACTTCA-GTA
1 CCCCTATTTGTACTT-AGGTA
14299705 CCCCTA
1 CCCCTA
14299711 AATTGCACAT
Statistics
Matches: 59, Mismatches: 26, Indels: 6
0.65 0.29 0.07
Matches are distributed among these distances:
20 31 0.53
21 28 0.47
ACGTcount: A:0.17, C:0.30, G:0.14, T:0.40
Consensus pattern (20 bp):
CCCCTATTTGTACTTAGGTA
Found at i:14299654 original size:82 final size:82
Alignment explanation
Indices: 14299506--14299748 Score: 306
Period size: 82 Copynumber: 3.0 Consensus size: 82
14299496 AAAATTGATC
* * * * * * * *
14299506 AATTGCACTTACGTGCCCTTGTTTGTACTTCGATACCCCTGAATTACACTTACATACCCCGGTTT
1 AATTGCACTTATGTGCCCCTGTTTGTACTTCGGTACCCCTAAATTGCACTTACGTGCCCCTGTTT
*
14299571 GTACTTTGATACCCTTG
66 GTACTTCGATACCCTTG
* * * *
14299588 AATTACACTTATGTGCCCCTATTTGTACTTTGGTACCCCTAAATTGCACTTACGTGCCCCTTTTT
1 AATTGCACTTATGTGCCCCTGTTTGTACTTCGGTACCCCTAAATTGCACTTACGTGCCCCTGTTT
* * *
14299653 GTACTTCGGTACCTTTT
66 GTACTTCGATACCCTTG
* * *
14299670 AATTGCACTTATGTGCCCCTGTTTGTACTTCAGTACCCCTAAATTGCACATACGTGCCCCTGTTA
1 AATTGCACTTATGTGCCCCTGTTTGTACTTCGGTACCCCTAAATTGCACTTACGTGCCCCTGTTT
*
14299735 GTACTACGATACCC
66 GTACTTCGATACCC
14299749 CTAAATATAC
Statistics
Matches: 135, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
82 135 1.00
ACGTcount: A:0.21, C:0.28, G:0.14, T:0.37
Consensus pattern (82 bp):
AATTGCACTTATGTGCCCCTGTTTGTACTTCGGTACCCCTAAATTGCACTTACGTGCCCCTGTTT
GTACTTCGATACCCTTG
Found at i:14321109 original size:50 final size:50
Alignment explanation
Indices: 14320985--14321226 Score: 184
Period size: 50 Copynumber: 4.7 Consensus size: 50
14320975 GAATGTAACA
* * * ** * * *
14320985 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCCTGAAC--
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-ATCGG
** * * * **
14321034 TGCCAATTCCATATCCCAGATATGGTCTTACATTGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* ** *
14321084 TGTCC-ATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TG-CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
14321134 TGCCAACGCCATGTCCCAGACATGGTCTTACATGTGACCTCTCATAATCTCAATGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
* *
14321190 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
14321227 TCTCATTCCC
Statistics
Matches: 153, Mismatches: 30, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
48 2 0.01
49 36 0.24
50 76 0.50
51 2 0.01
53 2 0.01
56 35 0.23
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:14322247 original size:40 final size:40
Alignment explanation
Indices: 14322153--14322265 Score: 111
Period size: 40 Copynumber: 2.8 Consensus size: 40
14322143 TATAATCCTG
* * * * *
14322153 CACACTAAGTGCCTTACATAGCCGAAGCTATCTCAGTCTCG
1 CACACTAAGTGCCATACATAGCCAAAGCTATCCCAG-ATCA
*
14322194 CACACTAAGTGCCATATATAGCCAAAGCTATTCCCA-ATCA
1 CACACTAAGTGCCATACATAGCCAAAGCTA-TCCCAGATCA
* * * *
14322234 CACACTAAGTGCCAGAAATAGACGAAGCTATC
1 CACACTAAGTGCCATACATAGCCAAAGCTATC
14322266 TTGAATCGCA
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
39 2 0.03
40 28 0.46
41 27 0.44
42 4 0.07
ACGTcount: A:0.35, C:0.29, G:0.15, T:0.21
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCAAAGCTATCCCAGATCA
Found at i:14327566 original size:21 final size:21
Alignment explanation
Indices: 14327540--14327581 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
14327530 CTACTTCAAT
14327540 AAAGTAATTTCTAAGTGGCAA
1 AAAGTAATTTCTAAGTGGCAA
14327561 AAAGTAATTTCTAAGTGGCAA
1 AAAGTAATTTCTAAGTGGCAA
14327582 CTAAGTAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.29
Consensus pattern (21 bp):
AAAGTAATTTCTAAGTGGCAA
Found at i:14331890 original size:33 final size:33
Alignment explanation
Indices: 14331851--14331915 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
14331841 TATCATTGGG
14331851 GTATGGTTCAGATTGTATTCCATTGTAGGCTAT
1 GTATGGTTCAGATTGTATTCCATTGTAGGCTAT
*
14331884 GTATGGTTTAGATTGTATTCCATTGTAGGCTA
1 GTATGGTTCAGATTGTATTCCATTGTAGGCTA
14331916 GACTTATATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.22, C:0.11, G:0.25, T:0.43
Consensus pattern (33 bp):
GTATGGTTCAGATTGTATTCCATTGTAGGCTAT
Found at i:14336990 original size:11 final size:11
Alignment explanation
Indices: 14336942--14336990 Score: 62
Period size: 11 Copynumber: 4.5 Consensus size: 11
14336932 TAAAAAACTG
*
14336942 TTATTTTGTTG
1 TTATTTTGTTA
*
14336953 TCATTTTGTTA
1 TTATTTTGTTA
* *
14336964 TTATATTGCTA
1 TTATTTTGTTA
14336975 TTATTTTGTTA
1 TTATTTTGTTA
14336986 TTATT
1 TTATT
14336991 GTTTAAATAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.18, C:0.04, G:0.10, T:0.67
Consensus pattern (11 bp):
TTATTTTGTTA
Found at i:14337671 original size:21 final size:21
Alignment explanation
Indices: 14337645--14337689 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
14337635 TTAAGAAAGT
14337645 TAAAAGAGCCGATGGCTTAGC
1 TAAAAGAGCCGATGGCTTAGC
14337666 TAAAAGAGCCGATGGCTTAGC
1 TAAAAGAGCCGATGGCTTAGC
14337687 TAA
1 TAA
14337690 TGAAACTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.20
Consensus pattern (21 bp):
TAAAAGAGCCGATGGCTTAGC
Found at i:14348832 original size:20 final size:20
Alignment explanation
Indices: 14348809--14348846 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14348799 TCGAGAGAGG
* *
14348809 AGAAAGGGAAGGAAAAAAAT
1 AGAAAAGGAAAGAAAAAAAT
14348829 AGAAAAGGAAAGAAAAAA
1 AGAAAAGGAAAGAAAAAA
14348847 GGGAATGAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (20 bp):
AGAAAAGGAAAGAAAAAAAT
Found at i:14349219 original size:16 final size:16
Alignment explanation
Indices: 14349198--14349320 Score: 60
Period size: 16 Copynumber: 7.4 Consensus size: 16
14349188 GAAAGAATGT
14349198 TTTATTTTTTATGTAA
1 TTTATTTTTTATGTAA
* *
14349214 TTTATTTTGTCATGT-G
1 TTTATTTT-TTATGTAA
*
14349230 TGTT-TTAGATTTAT-TAGA
1 T-TTATT--TTTTATGTA-A
14349248 TTTATTTTTTATGTAA
1 TTTATTTTTTATGTAA
* *
14349264 TTTATTTGTCATGT-A
1 TTTATTTTTTATGTAA
*
14349279 TGTT-TTAGGTTTAT-TAGA
1 T-TTATT--TTTTATGTA-A
14349297 TTTATTTTTTTATGTAA
1 TTTA-TTTTTTATGTAA
14349314 TTTATTT
1 TTTATTT
14349321 GGCATGTTAT
Statistics
Matches: 79, Mismatches: 12, Indels: 32
0.64 0.10 0.26
Matches are distributed among these distances:
15 4 0.05
16 36 0.46
17 29 0.37
18 8 0.10
19 2 0.03
ACGTcount: A:0.22, C:0.02, G:0.12, T:0.64
Consensus pattern (16 bp):
TTTATTTTTTATGTAA
Found at i:14349327 original size:50 final size:49
Alignment explanation
Indices: 14349198--14349327 Score: 215
Period size: 50 Copynumber: 2.6 Consensus size: 49
14349188 GAAAGAATGT
*
14349198 TTTATTTTTTATGTAATTTATTTTGTCATGTGTGTTTTAGATTTATTAGA
1 TTTATTTTTTATGTAATTTA-TTTGTCATGTATGTTTTAGATTTATTAGA
*
14349248 TTTATTTTTTATGTAATTTATTTGTCATGTATGTTTTAGGTTTATTAGA
1 TTTATTTTTTATGTAATTTATTTGTCATGTATGTTTTAGATTTATTAGA
*
14349297 TTTATTTTTTTATGTAATTTATTTGGCATGT
1 TTTA-TTTTTTATGTAATTTATTTGTCATGT
14349328 TATTATTATT
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
49 31 0.41
50 45 0.59
ACGTcount: A:0.22, C:0.02, G:0.14, T:0.62
Consensus pattern (49 bp):
TTTATTTTTTATGTAATTTATTTGTCATGTATGTTTTAGATTTATTAGA
Found at i:14349343 original size:50 final size:47
Alignment explanation
Indices: 14349198--14349343 Score: 168
Period size: 50 Copynumber: 2.9 Consensus size: 47
14349188 GAAAGAATGT
* *
14349198 TTTATTTTTTATGTAATTTATTTTGTCATGTGTGTTTTAGATTTATTAGA
1 TTTATTTTTTATGTAATTTA-TTTGTCATGT-TATTTTATA-TTATTAGA
*
14349248 TTTATTTTTTATGTAATTTATTTGTCATGTATGTTTTAGGT-TTATTAGA
1 TTTATTTTTTATGTAATTTATTTGTCATGT-TATTTTA--TATTATTAGA
*
14349297 TTTATTTTTTTATGTAATTTATTTGGCATGTTATTATTATTATTATT
1 TTTA-TTTTTTATGTAATTTATTTGTCATGTTATT-TTA-TATTATT
14349344 TTAATATAAA
Statistics
Matches: 86, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
49 33 0.38
50 53 0.62
ACGTcount: A:0.23, C:0.02, G:0.12, T:0.63
Consensus pattern (47 bp):
TTTATTTTTTATGTAATTTATTTGTCATGTTATTTTATATTATTAGA
Found at i:14350927 original size:33 final size:33
Alignment explanation
Indices: 14350883--14350979 Score: 117
Period size: 33 Copynumber: 3.0 Consensus size: 33
14350873 TATCTTCATT
** * *
14350883 CCAGTA-CCACCGCAGTACAACACTCCTCCTGG
1 CCAGTATCCACCGCAGTACTCCACTCCTCCCGA
*
14350915 CCAGTATCCACCGCATTACTCCACTCCTCCCGA
1 CCAGTATCCACCGCAGTACTCCACTCCTCCCGA
*
14350948 CTC-GTATCCACCGTAGTACTCCACTCCTCCCG
1 C-CAGTATCCACCGCAGTACTCCACTCCTCCCG
14350980 GCTCAAGTTC
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
32 6 0.11
33 49 0.88
34 1 0.02
ACGTcount: A:0.21, C:0.46, G:0.12, T:0.21
Consensus pattern (33 bp):
CCAGTATCCACCGCAGTACTCCACTCCTCCCGA
Found at i:14356896 original size:33 final size:33
Alignment explanation
Indices: 14356859--14356922 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
14356849 ATGCATGACT
14356859 ACTAGATACATCTACTCTAAATACATTTATTAA
1 ACTAGATACATCTACTCTAAATACATTTATTAA
*
14356892 ACTAGATACATCTACTTTAAATACATTTATT
1 ACTAGATACATCTACTCTAAATACATTTATT
14356923 TAAGTACAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.41, C:0.17, G:0.03, T:0.39
Consensus pattern (33 bp):
ACTAGATACATCTACTCTAAATACATTTATTAA
Found at i:14373207 original size:30 final size:31
Alignment explanation
Indices: 14373152--14373209 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
14373142 ACCCTTAAAC
** *
14373152 TATTTACACTATTGGTCCTTCAAATTTTTTG
1 TATTTACACTATTAATCCCTCAAATTTTTTG
14373183 TATTTACACT-TTAATCCCTCAAATTTT
1 TATTTACACTATTAATCCCTCAAATTTT
14373210 GAGAATTTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 14 0.58
31 10 0.42
ACGTcount: A:0.26, C:0.19, G:0.05, T:0.50
Consensus pattern (31 bp):
TATTTACACTATTAATCCCTCAAATTTTTTG
Found at i:14373399 original size:23 final size:23
Alignment explanation
Indices: 14373368--14373418 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
14373358 ACCTACTTTC
* *
14373368 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
14373391 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
14373414 TTACA
1 TTACA
14373419 TTGCTAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:14373749 original size:30 final size:30
Alignment explanation
Indices: 14373688--14373878 Score: 149
Period size: 30 Copynumber: 6.4 Consensus size: 30
14373678 TCATCGGCGA
* * *
14373688 ATGAAAAGGGATAGCTTCGACTATC-AATT
1 ATGAAAAGGGATGGCTACGACCATCAAATT
*
14373717 ATGAAAAGGGATTG-TGACGACCATCAAATT
1 ATGAAAAGGGATGGCT-ACGACCATCAAATT
* * * **
14373747 ATGAAAAGGGATGGCTTCGGCTAT-TGATCT
1 ATGAAAAGGGATGGCTACGACCATCAAAT-T
* * *
14373777 ATGAAAAGGGATGGCTTCGACTATCAAATC
1 ATGAAAAGGGATGGCTACGACCATCAAATT
* **
14373807 ATGAAAAGGGATGG-TGACGACCATCGAACA
1 ATGAAAAGGGATGGCT-ACGACCATCAAATT
* * *
14373837 ATGAAAAGAGATGG-TGACGACCACCAAATC
1 ATGAAAAGGGATGGCT-ACGACCATCAAATT
14373867 ATGAAAAGGGAT
1 ATGAAAAGGGAT
14373879 AGCTTTGGCT
Statistics
Matches: 132, Mismatches: 24, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
28 1 0.01
29 23 0.17
30 105 0.80
31 3 0.02
ACGTcount: A:0.38, C:0.15, G:0.26, T:0.21
Consensus pattern (30 bp):
ATGAAAAGGGATGGCTACGACCATCAAATT
Found at i:14373803 original size:60 final size:59
Alignment explanation
Indices: 14373688--14373908 Score: 221
Period size: 60 Copynumber: 3.7 Consensus size: 59
14373678 TCATCGGCGA
* * * *
14373688 ATGAAAAGGGATAGCTTCGACTATCAATTATGAAAAGGGATTGTGACGACCATCAAATT
1 ATGAAAAGGGATGGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAAATC
* * * *
14373747 ATGAAAAGGGATGGCTTCGGCTATTGATCTATGAAAAGGGATGGCT-TCGACTATCAAATC
1 ATGAAAAGGGATGGCTTCGACTATCGAT-TATGAAAAGGGATGG-TGACGACCATCAAATC
* * ** * *
14373807 ATGAAAAGGGATGG-TGACGACCATCGAACAATGAAAAGAGATGGTGACGACCACCAAATC
1 ATGAAAAGGGATGGCT-TCGACTATCG-ATTATGAAAAGGGATGGTGACGACCATCAAATC
* * * *
14373867 ATGAAAAGGGATAGCTTTGGCTGTCGAATTATGAAAAGGGAT
1 ATGAAAAGGGATGGCTTCGACTATCG-ATTATGAAAAGGGAT
14373909 AACTTCGATT
Statistics
Matches: 129, Mismatches: 27, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
59 26 0.20
60 100 0.78
61 3 0.02
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (59 bp):
ATGAAAAGGGATGGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAAATC
Found at i:14373841 original size:90 final size:89
Alignment explanation
Indices: 14373688--14373850 Score: 254
Period size: 90 Copynumber: 1.8 Consensus size: 89
14373678 TCATCGGCGA
* * **
14373688 ATGAAAAGGGATAGCTTCGACTATCAATTATGAAAAGGGATTGTGACGACCATCAAATTATGAAA
1 ATGAAAAGGGATAGCTTCGACTATCAATCATGAAAAGGGATGGTGACGACCATCAAACAATGAAA
*
14373753 AGGGATGGCTTCGGCTATTGATCT
66 AGAGATGGCTTCGGCTATTGATCT
* *
14373777 ATGAAAAGGGATGGCTTCGACTATCAAATCATGAAAAGGGATGGTGACGACCATCGAACAATGAA
1 ATGAAAAGGGATAGCTTCGACTATC-AATCATGAAAAGGGATGGTGACGACCATCAAACAATGAA
14373842 AAGAGATGG
65 AAGAGATGG
14373851 TGACGACCAC
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
89 24 0.36
90 42 0.64
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.23
Consensus pattern (89 bp):
ATGAAAAGGGATAGCTTCGACTATCAATCATGAAAAGGGATGGTGACGACCATCAAACAATGAAA
AGAGATGGCTTCGGCTATTGATCT
Found at i:14373871 original size:90 final size:89
Alignment explanation
Indices: 14373688--14373908 Score: 248
Period size: 90 Copynumber: 2.5 Consensus size: 89
14373678 TCATCGGCGA
* **
14373688 ATGAAAAGGGATAGCTTCGACTATCAATTATGAAAAGGGATTGTGACGACCATCAAATTATGAAA
1 ATGAAAAGGGATAGCTTCGACTATCAATTATGAAAAGGGATGGTGACGACCATCAAACAATGAAA
* * * * ***
14373753 AGGGATGGCTTCGGCTATTGATCT
66 AGAGATGGCTACGACCACAAATCT
* * *
14373777 ATGAAAAGGGATGGCTTCGACTATCAAATCATGAAAAGGGATGGTGACGACCATCGAACAATGAA
1 ATGAAAAGGGATAGCTTCGACTATC-AATTATGAAAAGGGATGGTGACGACCATCAAACAATGAA
14373842 AAGAGATGG-TGACGACCACCAAATC-
65 AAGAGATGGCT-ACGACCA-CAAATCT
* * *
14373867 ATGAAAAGGGATAGCTTTGGCTGTCGAATTATGAAAAGGGAT
1 ATGAAAAGGGATAGCTTCGACTATC-AATTATGAAAAGGGAT
14373909 AACTTCGATT
Statistics
Matches: 110, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
89 25 0.23
90 82 0.75
91 3 0.03
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (89 bp):
ATGAAAAGGGATAGCTTCGACTATCAATTATGAAAAGGGATGGTGACGACCATCAAACAATGAAA
AGAGATGGCTACGACCACAAATCT
Found at i:14374546 original size:16 final size:16
Alignment explanation
Indices: 14374525--14374556 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14374515 TGAATTGTTG
*
14374525 TGAATTGGTACTTGTA
1 TGAATTGGTACATGTA
14374541 TGAATTGGTACATGTA
1 TGAATTGGTACATGTA
14374557 AATTATATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.41
Consensus pattern (16 bp):
TGAATTGGTACATGTA
Found at i:14388962 original size:78 final size:78
Alignment explanation
Indices: 14388833--14389102 Score: 540
Period size: 78 Copynumber: 3.5 Consensus size: 78
14388823 TGCAATTCAA
14388833 GAAGTTTTTGGATGTTCTGAAGCAGTTACACATCAATATTCCGTTGGTGGAAGCTTTAGAACAAA
1 GAAGTTTTTGGATGTTCTGAAGCAGTTACACATCAATATTCCGTTGGTGGAAGCTTTAGAACAAA
14388898 TGCCAAATTATGT
66 TGCCAAATTATGT
14388911 GAAGTTTTTGGATGTTCTGAAGCAGTTACACATCAATATTCCGTTGGTGGAAGCTTTAGAACAAA
1 GAAGTTTTTGGATGTTCTGAAGCAGTTACACATCAATATTCCGTTGGTGGAAGCTTTAGAACAAA
14388976 TGCCAAATTATGT
66 TGCCAAATTATGT
14388989 GAAGTTTTTGGATGTTCTGAAGCAGTTACACATCAATATTCCGTTGGTGGAAGCTTTAGAACAAA
1 GAAGTTTTTGGATGTTCTGAAGCAGTTACACATCAATATTCCGTTGGTGGAAGCTTTAGAACAAA
14389054 TGCCAAATTATGT
66 TGCCAAATTATGT
14389067 GAAGTTTTTGGATGTTCTGAAGCAGTTACACATCAA
1 GAAGTTTTTGGATGTTCTGAAGCAGTTACACATCAA
14389103 GAAGAAACGA
Statistics
Matches: 192, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 192 1.00
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (78 bp):
GAAGTTTTTGGATGTTCTGAAGCAGTTACACATCAATATTCCGTTGGTGGAAGCTTTAGAACAAA
TGCCAAATTATGT
Found at i:14395194 original size:13 final size:13
Alignment explanation
Indices: 14395176--14395202 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14395166 TAATGTTGTG
14395176 ACAATTACATAAT
1 ACAATTACATAAT
14395189 ACAATTACATAAT
1 ACAATTACATAAT
14395202 A
1 A
14395203 ATCCAAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (13 bp):
ACAATTACATAAT
Found at i:14401086 original size:41 final size:41
Alignment explanation
Indices: 14401041--14401135 Score: 127
Period size: 41 Copynumber: 2.3 Consensus size: 41
14401031 GGCTCAGTGC
* * * * *
14401041 CTAGCAGACTTATTGCCGGTGAAACCATTCAGACTTTACGT
1 CTAGCAGGCTTAATGCCGGTGAAACAATTCAGACTATAAGT
* *
14401082 CTAGCAGGCTAAATGCTGGTGAAACAATTCAGACTATAAGT
1 CTAGCAGGCTTAATGCCGGTGAAACAATTCAGACTATAAGT
14401123 CTAGCAGGCTTAA
1 CTAGCAGGCTTAA
14401136 AGTCTGTGTA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (41 bp):
CTAGCAGGCTTAATGCCGGTGAAACAATTCAGACTATAAGT
Found at i:14406564 original size:51 final size:49
Alignment explanation
Indices: 14406451--14406635 Score: 239
Period size: 51 Copynumber: 3.7 Consensus size: 49
14406441 TGCCTATAAA
* * *
14406451 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCGATAG-ATGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCCGA-AGTTTGGT
* *
14406499 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCCGAAGGCTTTGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCCGAA-G-TTTGGT
* * *
14406550 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGGAAAGTTTGAT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCCG-AAGTTTGGT
*
14406600 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
14406636 TCGAATGATA
Statistics
Matches: 120, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
48 34 0.28
49 4 0.03
50 39 0.32
51 41 0.34
52 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCCGAAGTTTGGT
Found at i:14406625 original size:50 final size:49
Alignment explanation
Indices: 14406451--14406640 Score: 247
Period size: 50 Copynumber: 3.8 Consensus size: 49
14406441 TGCCTATAAA
* * * *
14406451 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGATAG-ATGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAAGTTTGGT
* * *
14406499 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCCGAAGGCTTTGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA-CCGAAAG-TTTGGT
* *
14406550 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGGAAAGTTTGAT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAAAGTTTGGT
* *
14406600 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAA
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAA
14406641 TGATAATAAT
Statistics
Matches: 123, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
48 33 0.27
49 7 0.06
50 42 0.34
51 41 0.33
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAAGTTTGGT
Found at i:14410538 original size:20 final size:22
Alignment explanation
Indices: 14410503--14410544 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
14410493 AGTTTCAAAT
14410503 TAATTTTTGGTCTAG-TAATTA
1 TAATTTTTGGTCTAGTTAATTA
14410524 TAATTTTTGGT-TAGTTAATTA
1 TAATTTTTGGTCTAGTTAATTA
14410545 AAGAAAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.29, C:0.02, G:0.14, T:0.55
Consensus pattern (22 bp):
TAATTTTTGGTCTAGTTAATTA
Found at i:14413197 original size:30 final size:30
Alignment explanation
Indices: 14413183--14414012 Score: 1400
Period size: 30 Copynumber: 27.7 Consensus size: 30
14413173 AGGTTTGACT
*
14413183 ATCAAATTATGAAAATGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413213 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
*
14413243 ATCAAATTATGAAAAGGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
* * * * * *
14413273 ATCAACTTATGAAAAGGGATGACT-TCGGCT
1 ATCAAATTATGAAAAAGGATG-GTGACGACC
* ** * *
14413303 ATC-AATCTATGAAAAGGGATGGCT-TTGGCT
1 ATCAAAT-TATGAAAAAGGATGG-TGACGACC
* * * * *
14413333 ATC-AATCTATGAAAAGGGATAGCT-TCGGCT
1 ATCAAAT-TATGAAAAAGGAT-GGTGACGACC
*
14413363 ATCAAATTATGAAAAGGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413393 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413423 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413453 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413483 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413513 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413543 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413573 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413603 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413633 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413663 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413693 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413723 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413753 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413783 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413813 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413843 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413873 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413903 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413933 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
14413963 ATCAAATTATGAAAAAGGATGGTGACGACC
1 ATCAAATTATGAAAAAGGATGGTGACGACC
*
14413993 ATCAAATTATGAAAAGGGAT
1 ATCAAATTATGAAAAAGGAT
14414013 AGCTTTAGCT
Statistics
Matches: 776, Mismatches: 18, Indels: 12
0.96 0.02 0.01
Matches are distributed among these distances:
29 4 0.01
30 767 0.99
31 5 0.01
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (30 bp):
ATCAAATTATGAAAAAGGATGGTGACGACC
Found at i:14414034 original size:30 final size:30
Alignment explanation
Indices: 14414000--14414072 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
14413990 ACCATCAAAT
*
14414000 TATGAAAAGGGATAGCTTTAGCTATCGAAC
1 TATGAAAAGGGATAACTTTAGCTATCGAAC
* *
14414030 TATGAAAAGGGATAACTTTAGTTATCGAAT
1 TATGAAAAGGGATAACTTTAGCTATCGAAC
14414060 TATGAAAAGGGAT
1 TATGAAAAGGGAT
14414073 GTATTAACCA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (30 bp):
TATGAAAAGGGATAACTTTAGCTATCGAAC
Found at i:14415299 original size:21 final size:21
Alignment explanation
Indices: 14415261--14415300 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14415251 CTGTAGCTTC
*
14415261 AAAAATTTTCTTTATTTCTTG
1 AAAAATTTTCTTAATTTCTTG
14415282 AAAAATTTTC-TAAGTTTCT
1 AAAAATTTTCTTAA-TTTCT
14415301 GATTTATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.53
Consensus pattern (21 bp):
AAAAATTTTCTTAATTTCTTG
Found at i:14416309 original size:31 final size:30
Alignment explanation
Indices: 14416264--14416331 Score: 75
Period size: 31 Copynumber: 2.3 Consensus size: 30
14416254 GAACTTTAAT
* * *
14416264 TATACACATGAAACTTGAATTTTGGTTCATA
1 TATATACAAGAAACTTGAATTTTGATTCA-A
**
14416295 TATATACAAGAAACTTTTATTTTGATTCAA
1 TATATACAAGAAACTTGAATTTTGATTCAA
14416325 T-TATACA
1 TATATACA
14416332 CATTTAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 6 0.19
30 2 0.06
31 24 0.75
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (30 bp):
TATATACAAGAAACTTGAATTTTGATTCAA
Found at i:14417449 original size:2 final size:2
Alignment explanation
Indices: 14417442--14417471 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
14417432 TGAACTGTTT
14417442 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
14417472 AATTATGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:14420420 original size:13 final size:13
Alignment explanation
Indices: 14420398--14420429 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14420388 CTGTAGGGGT
*
14420398 CACACAGCCAAGC
1 CACACGGCCAAGC
14420411 CACACGGCCAAGC
1 CACACGGCCAAGC
14420424 CACACG
1 CACACG
14420430 CCCGTGTGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.34, C:0.47, G:0.19, T:0.00
Consensus pattern (13 bp):
CACACGGCCAAGC
Found at i:14424275 original size:43 final size:43
Alignment explanation
Indices: 14424212--14424385 Score: 249
Period size: 43 Copynumber: 4.0 Consensus size: 43
14424202 TTTTAGAAAT
* *
14424212 AAACGCCGCTAAAGAACAAGACCTTTAGTGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* * *
14424255 AAACGCCGCTAAAGATCAAGACCTTTAGCAGCACTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* *
14424298 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* ** *
14424341 AAACGCCGCTAAAGACCATGACCTTTAGCAACGCTTTTCTCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
14424384 AA
1 AA
14424386 GCATGACCTT
Statistics
Matches: 120, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 120 1.00
ACGTcount: A:0.30, C:0.32, G:0.16, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
Found at i:14426409 original size:23 final size:23
Alignment explanation
Indices: 14426383--14426430 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
14426373 ATCAAACACC
14426383 ATTCACATAATTTAACTCACATA
1 ATTCACATAATTTAACTCACATA
*
14426406 ATTCACATAATTTAACTCATATA
1 ATTCACATAATTTAACTCACATA
14426429 AT
1 AT
14426431 CAAACCAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.38
Consensus pattern (23 bp):
ATTCACATAATTTAACTCACATA
Found at i:14428087 original size:46 final size:45
Alignment explanation
Indices: 14428020--14428111 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 45
14428010 AATGTGAAAC
14428020 AAAAAGAAAATCAACGGCATTTCTAGGGTGAGGGGAACTTCGTCA
1 AAAAAGAAAATCAACGGCATTTCTAGGGTGAGGGGAACTTCGTCA
* *
14428065 NAAAAAGAAAATTAACGGCATTTCTAGGGTGAGGGGGACTTCGTCA
1 -AAAAAGAAAATCAACGGCATTTCTAGGGTGAGGGGAACTTCGTCA
14428111 A
1 A
14428112 TACAGTGACT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
45 1 0.02
46 43 0.98
ACGTcount: A:0.37, C:0.14, G:0.27, T:0.21
Consensus pattern (45 bp):
AAAAAGAAAATCAACGGCATTTCTAGGGTGAGGGGAACTTCGTCA
Found at i:14428737 original size:40 final size:39
Alignment explanation
Indices: 14428660--14428745 Score: 100
Period size: 40 Copynumber: 2.2 Consensus size: 39
14428650 TTTGAAAAAT
* *
14428660 GCCGCTAATGCTAATTTTTAGCGGCGTTTTCCAAAAAGC
1 GCCGCTAATACTAATCTTTAGCGGCGTTTTCCAAAAAGC
* * ***
14428699 GTCGCTAATACTCAATCTTTAGTGGCGTTTTTTTAAAAGC
1 GCCGCTAATACT-AATCTTTAGCGGCGTTTTCCAAAAAGC
14428739 GCCGCTA
1 GCCGCTA
14428746 GTGCTTGATT
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
39 10 0.26
40 28 0.74
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (39 bp):
GCCGCTAATACTAATCTTTAGCGGCGTTTTCCAAAAAGC
Found at i:14436105 original size:13 final size:13
Alignment explanation
Indices: 14436087--14436153 Score: 73
Period size: 13 Copynumber: 5.0 Consensus size: 13
14436077 AATCGAGTGG
*
14436087 AAAATGAATATAT
1 AAAATGATTATAT
14436100 AAAATGATTATAT
1 AAAATGATTATAT
* *
14436113 -GAATCAATTATAT
1 AAAAT-GATTATAT
14436126 GGAAAATGATTATAT
1 --AAAATGATTATAT
14436141 AAAATGATTATAT
1 AAAATGATTATAT
14436154 GAATTGGTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
12 3 0.07
13 32 0.71
15 7 0.16
16 3 0.07
ACGTcount: A:0.52, C:0.01, G:0.10, T:0.36
Consensus pattern (13 bp):
AAAATGATTATAT
Found at i:14436129 original size:41 final size:41
Alignment explanation
Indices: 14436084--14436171 Score: 140
Period size: 41 Copynumber: 2.1 Consensus size: 41
14436074 GTTAATCGAG
14436084 TGGAAAATGAATATATAAAATGATTATATGAATCAATTATA
1 TGGAAAATGAATATATAAAATGATTATATGAATCAATTATA
* ***
14436125 TGGAAAATGATTATATAAAATGATTATATGAATTGGTTATA
1 TGGAAAATGAATATATAAAATGATTATATGAATCAATTATA
14436166 TGGAAA
1 TGGAAA
14436172 TAGTTATGTG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.48, C:0.01, G:0.16, T:0.35
Consensus pattern (41 bp):
TGGAAAATGAATATATAAAATGATTATATGAATCAATTATA
Found at i:14436150 original size:28 final size:27
Alignment explanation
Indices: 14436087--14436156 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 27
14436077 AATCGAGTGG
*
14436087 AAAATGAATATAT-AAAATGATTATAT
1 AAAATGATTATATGAAAATGATTATAT
* *
14436113 -GAATCAATTATATGGAAAATGATTATAT
1 AAAAT-GATTATAT-GAAAATGATTATAT
14436141 AAAATGATTATATGAA
1 AAAATGATTATATGAA
14436157 TTGGTTATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
25 3 0.09
26 6 0.17
27 3 0.09
28 20 0.57
29 3 0.09
ACGTcount: A:0.53, C:0.01, G:0.11, T:0.34
Consensus pattern (27 bp):
AAAATGATTATATGAAAATGATTATAT
Found at i:14436164 original size:13 final size:13
Alignment explanation
Indices: 14436129--14436207 Score: 54
Period size: 13 Copynumber: 6.0 Consensus size: 13
14436119 ATTATATGGA
* *
14436129 AAATGATTATATA
1 AAATGGTTATATG
*
14436142 AAATGATTATATG
1 AAATGGTTATATG
*
14436155 AATTGGTTATATGG
1 AAATGGTTATAT-G
* *
14436169 AAATAGTTATGTG
1 AAATGGTTATATG
14436182 AATTAT-G-TATATG
1 AA--ATGGTTATATG
*
14436195 AAATGTTTATATG
1 AAATGGTTATATG
14436208 GATATATATG
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
11 2 0.04
13 38 0.72
14 11 0.21
15 2 0.04
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.42
Consensus pattern (13 bp):
AAATGGTTATATG
Found at i:14437796 original size:24 final size:24
Alignment explanation
Indices: 14437750--14437796 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
14437740 GCTAGGGTAG
* *
14437750 GAAAAAGAAAAAAGGAAGGAAAAT
1 GAAAAAGAAAAAAGAAAGAAAAAT
14437774 GAAAAAGAAAATAA-AAAGAAAAA
1 GAAAAAGAAAA-AAGAAAGAAAAA
14437797 GAGGTACAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (24 bp):
GAAAAAGAAAAAAGAAAGAAAAAT
Found at i:14441560 original size:3 final size:3
Alignment explanation
Indices: 14441554--14441589 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
14441544 GTCTACTACA
14441554 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
14441590 TGCAATACAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:14467679 original size:22 final size:23
Alignment explanation
Indices: 14467631--14467703 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 23
14467621 TGCTAGAAGC
* *
14467631 AAATAAAATAAAAATTAGAAAACAA
1 AAATTAAATAAAAA-TA-AAAATAA
14467656 AAATTAAACT-AAAA-AAAAAT-A
1 AAATTAAA-TAAAAATAAAAATAA
*
14467677 AAATTTAATAAAAATAAAAATAA
1 AAATTAAATAAAAATAAAAATAA
14467700 AAAT
1 AAAT
14467704 GGCTAAATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
20 1 0.02
21 12 0.29
22 10 0.24
23 6 0.15
25 11 0.27
26 1 0.02
ACGTcount: A:0.75, C:0.03, G:0.01, T:0.21
Consensus pattern (23 bp):
AAATTAAATAAAAATAAAAATAA
Found at i:14467944 original size:14 final size:14
Alignment explanation
Indices: 14467925--14467956 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
14467915 GATGATTGTT
*
14467925 CTAATCTAAATTTA
1 CTAATCTAAATTAA
14467939 CTAATCTAAATTAA
1 CTAATCTAAATTAA
14467953 CTAA
1 CTAA
14467957 GAACACGACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.38
Consensus pattern (14 bp):
CTAATCTAAATTAA
Found at i:14473144 original size:97 final size:97
Alignment explanation
Indices: 14473006--14473266 Score: 350
Period size: 97 Copynumber: 2.7 Consensus size: 97
14472996 TTTTTAAATT
* * * * *
14473006 TAATTATTTAATCTTATTTTCCTATTCAAAGAAAATCTTAATTATTTTCATTATCGTTATCATTA
1 TAATTATTTAATCTTATTTTCTTATTAAAAGAAAATATTAATTATTTT-ATTATCATTAACATTA
14473071 AAAATATTTATTAATTATTT-AATTTTTTGAACAA
65 AAAA-ATTTATTAATTATTTAAATTTTTT-AACAA
* *
14473105 TAATTATTT-ATCTTATTTT-TTACTAAAATAAAATATTAATTACTTTTATTATCATTAACA-TA
1 TAATTATTTAATCTTATTTTCTTATTAAAAGAAAATATTAATTA-TTTTATTATCATTAACATTA
**
14473167 AAAAATTTATTAATTATTTAAATTTTTTAATGA
65 AAAAATTTATTAATTATTTAAATTTTTTAACAA
* * *
14473200 TAATTATTTAATATTATTTTCTTATTAAAAGAAACTATTAATTACTTTATTATCATTAACATTAA
1 TAATTATTTAATCTTATTTTCTTATTAAAAGAAAATATTAATTATTTTATTATCATTAACATTAA
14473265 AA
66 AA
14473267 GTTTTAATTA
Statistics
Matches: 143, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
95 27 0.19
96 39 0.27
97 54 0.38
98 14 0.10
99 9 0.06
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (97 bp):
TAATTATTTAATCTTATTTTCTTATTAAAAGAAAATATTAATTATTTTATTATCATTAACATTAA
AAAATTTATTAATTATTTAAATTTTTTAACAA
Found at i:14474134 original size:32 final size:31
Alignment explanation
Indices: 14474095--14474166 Score: 126
Period size: 32 Copynumber: 2.3 Consensus size: 31
14474085 TTGATATGGC
*
14474095 ATGTTAAATCATCATTTCAAATGAAAATTAT
1 ATGTTAAATCATCATTTCAAACGAAAATTAT
14474126 ATGTTTAAATCATCATTTCAAACGAAAATTAT
1 ATG-TTAAATCATCATTTCAAACGAAAATTAT
14474158 ATGTTAAAT
1 ATGTTAAAT
14474167 TATACTATTG
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
31 9 0.23
32 30 0.77
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (31 bp):
ATGTTAAATCATCATTTCAAACGAAAATTAT
Found at i:14474248 original size:12 final size:12
Alignment explanation
Indices: 14474209--14474253 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 12
14474199 GAGCAATTTA
14474209 ATTTTTTTCTTT
1 ATTTTTTTCTTT
14474221 ATGTTCTTTTAACTTT
1 AT-TT-TTTT--CTTT
14474237 ATTTTTTTCTTT
1 ATTTTTTTCTTT
14474249 ATTTT
1 ATTTT
14474254 CTATTCTCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
12 11 0.38
13 2 0.07
14 8 0.28
15 2 0.07
16 6 0.21
ACGTcount: A:0.13, C:0.09, G:0.02, T:0.76
Consensus pattern (12 bp):
ATTTTTTTCTTT
Found at i:14476627 original size:40 final size:40
Alignment explanation
Indices: 14476572--14476906 Score: 166
Period size: 40 Copynumber: 8.7 Consensus size: 40
14476562 AGTTTTAATG
*
14476572 GCATTAGCAGCGCTTTTTGAAAAACGCCGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
* * * * **
14476612 GCATTAGCGGCGCTTTTTGAAAATCGCCGCAAAAAATTAA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
** * **** * *
14476652 GCACAATGC--CG-TTATTT-TATGTTG-AGCTTTAG-T-G-
1 GCATTA-GCGGCGCTT-TTTGAAAAACGCCGCTATAGATCGA
*
14476686 GCATTAGCGGCGCTTTTTGAAAAATGCCGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
* * * * **
14476726 GCATTAGCGGCGCTTTTTGAAAATCGCCGCAAAAAATTAA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
** * **** * *
14476766 GCACAATGC--CG-TTATTT-TATGTTG-AGCTTTAG-T-G-
1 GCATTA-GCGGCGCTT-TTTGAAAAACGCCGCTATAGATCGA
*
14476800 GCATTAGCGGCGCTTTTTGAAAAATGCCGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
* *
14476840 GCATTAGCGGCGCTTTTTG-AAAA-GCCACTATAAATCGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
* *
14476878 GCACTAGCGGTGCTTTTTTGAAAAACGCC
1 GCATTAGCGGCGC-TTTTTGAAAAACGCC
14476907 ACAAAAAAGT
Statistics
Matches: 214, Mismatches: 58, Indels: 45
0.68 0.18 0.14
Matches are distributed among these distances:
33 4 0.02
34 8 0.04
35 10 0.05
36 12 0.06
37 18 0.08
38 36 0.17
39 22 0.10
40 97 0.45
41 7 0.03
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGA
Found at i:14476707 original size:114 final size:114
Alignment explanation
Indices: 14476478--14476862 Score: 646
Period size: 114 Copynumber: 3.4 Consensus size: 114
14476468 CGTTTGGATA
* * * * * *
14476478 AAAAATGACGCTATAGATCGAGCATTAGCGGCACTTTTTAAAAAACGCCACAAAAAAATAAGCA-
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAATCGCCGCAAAAAATTAAGCAC
** * * * *
14476542 AATGATGTCATTTTATGTTGAGTTTTAATGGCATTAGCAGCGCTTTTTG
66 AATGCCGTTATTTTATGTTGAGCTTTAGTGGCATTAGCGGCGCTTTTTG
*
14476591 AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAATCGCCGCAAAAAATTAAGCAC
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAATCGCCGCAAAAAATTAAGCAC
14476656 AATGCCGTTATTTTATGTTGAGCTTTAGTGGCATTAGCGGCGCTTTTTG
66 AATGCCGTTATTTTATGTTGAGCTTTAGTGGCATTAGCGGCGCTTTTTG
14476705 AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAATCGCCGCAAAAAATTAAGCAC
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAATCGCCGCAAAAAATTAAGCAC
14476770 AATGCCGTTATTTTATGTTGAGCTTTAGTGGCATTAGCGGCGCTTTTTG
66 AATGCCGTTATTTTATGTTGAGCTTTAGTGGCATTAGCGGCGCTTTTTG
14476819 AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAA
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAA
14476863 GCCACTATAA
Statistics
Matches: 257, Mismatches: 14, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
113 57 0.22
114 200 0.78
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (114 bp):
AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAATCGCCGCAAAAAATTAAGCAC
AATGCCGTTATTTTATGTTGAGCTTTAGTGGCATTAGCGGCGCTTTTTG
Found at i:14476880 original size:38 final size:39
Alignment explanation
Indices: 14476800--14476901 Score: 143
Period size: 38 Copynumber: 2.6 Consensus size: 39
14476790 AGCTTTAGTG
* *
14476800 GCATTAGCGGCGCTTTTTGAAAAATGCCGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTG-AAAATGCCACTATAAATCGA
14476840 GCATTAGCGGCGCTTTTTGAAAA-GCCACTATAAATCGA
1 GCATTAGCGGCGCTTTTTGAAAATGCCACTATAAATCGA
* *
14476878 GCACTAGCGGTGCTTTTTTGAAAA
1 GCATTAGCGGCGC-TTTTTGAAAA
14476902 ACGCCACAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
38 24 0.42
39 14 0.25
40 19 0.33
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (39 bp):
GCATTAGCGGCGCTTTTTGAAAATGCCACTATAAATCGA
Found at i:14477004 original size:40 final size:40
Alignment explanation
Indices: 14476949--14477056 Score: 144
Period size: 40 Copynumber: 2.7 Consensus size: 40
14476939 AGCTTTAGTG
* * * *
14476949 GCATTAGCAGCGCTTTTTCAAAAATGCCGCTATTGATTGA
1 GCATTAGCAGCGCTTTTTAAAAAACGCCGCTATAGATCGA
* *
14476989 GCATTAGCGGCGCTTTTTAAAAAACGTCGCTATAGATCGA
1 GCATTAGCAGCGCTTTTTAAAAAACGCCGCTATAGATCGA
* *
14477029 TCATTAGCAGCGCTTTTTGAAAAACGCC
1 GCATTAGCAGCGCTTTTTAAAAAACGCC
14477057 ACAAAAAAGT
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (40 bp):
GCATTAGCAGCGCTTTTTAAAAAACGCCGCTATAGATCGA
Found at i:14477122 original size:147 final size:146
Alignment explanation
Indices: 14476686--14477165 Score: 606
Period size: 147 Copynumber: 3.2 Consensus size: 146
14476676 AGCTTTAGTG
* *
14476686 GCATTAGCGGCGCTTTTTGAAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAATC
1 GCATTAGCGGCGCTTTTT-AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAAC
* * *
14476751 GCCGCAAAAAA-TTAAGCACAATGCCGTTATTTTATGTTGAGCTTTAGTGGCATTAGCGGCGCTT
65 GCCACAAAAAAGTTAAGCACAACGCCG--------TGTTGAGCTTTAGTGGCATTAGCGACGCTT
*
14476815 TTTGAAAAATGCCGCTATAGATCGA
122 TTTGAAAAATGCCGCTATAGATTGA
* * * * *
14476840 GCATTAGCGGCGCTTTTTGAAAA-GCCACTATAAATCGAGCACTAGCGGTGCTTTTTTGAAAAAC
1 GCATTAGCGGCGCTTTTTAAAAACGCCGCTATAGATCGAGCATTAGCGGCGC-TTTTTGAAAAAC
* *
14476904 GCCACAAAAAAGTTAAGCACAACACAATCGTGTTGAGCTTTAGTGGCATTAGC-AGCGCTTTTTC
65 GCCACAAAAAAGTTAAGCACAACGC---CGTGTTGAGCTTTAGTGGCATTAGCGA-CGCTTTTTG
*
14476968 AAAAATGCCGCTATTGATTGA
126 AAAAATGCCGCTATAGATTGA
* * *
14476989 GCATTAGCGGCGCTTTTTAAAAAACGTCGCTATAGATCGATCATTAGCAGCGCTTTTTGAAAAAC
1 GCATTAGCGGCGCTTTTT-AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAAC
* *
14477054 GCCACAAAAAAGTTAAGCACAACGCCGTGTTGAGCTTTAATGGCATTAGCGATGCTTTTTGAAAA
65 GCCACAAAAAAGTTAAGCACAACGCCGTGTTGAGCTTTAGTGGCATTAGCGACGCTTTTTGAAAA
14477119 ATGCCGCTATAGATTGA
130 ATGCCGCTATAGATTGA
* *
14477136 GCTTTAGCGGCGCTTTATCAAAAACGCCGC
1 GCATTAGCGGCGCTTT-TTAAAAACGCCGC
14477166 AAAAAACATT
Statistics
Matches: 287, Mismatches: 29, Indels: 27
0.84 0.08 0.08
Matches are distributed among these distances:
147 76 0.26
148 2 0.01
149 68 0.24
150 40 0.14
151 21 0.07
152 24 0.08
153 25 0.09
154 29 0.10
157 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (146 bp):
GCATTAGCGGCGCTTTTTAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAACG
CCACAAAAAAGTTAAGCACAACGCCGTGTTGAGCTTTAGTGGCATTAGCGACGCTTTTTGAAAAA
TGCCGCTATAGATTGA
Found at i:14477637 original size:7 final size:7
Alignment explanation
Indices: 14477580--14477691 Score: 73
Period size: 7 Copynumber: 15.7 Consensus size: 7
14477570 GAGTTACTAT
*
14477580 TTTAAGG
1 TTTAGGG
*
14477587 TTTATGG
1 TTTAGGG
* *
14477594 ATTATGG
1 TTTAGGG
14477601 TTTAAGGG
1 TTT-AGGG
14477609 -TTAGGG
1 TTTAGGG
* *
14477615 TTTAAGA
1 TTTAGGG
14477622 TTTAGGGG
1 TTTA-GGG
14477630 TTTAGGG
1 TTTAGGG
14477637 TTTAGGG
1 TTTAGGG
* *
14477644 TTTATGT
1 TTTAGGG
* *
14477651 TTTATGA
1 TTTAGGG
*
14477658 TTTATGG
1 TTTAGGG
14477665 TTTAGGG
1 TTTAGGG
**
14477672 GATAGGGG
1 TTTA-GGG
14477680 TTTAGGG
1 TTTAGGG
14477687 TTTAG
1 TTTAG
14477692 ATTAATTAGT
Statistics
Matches: 84, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
6 4 0.05
7 67 0.80
8 13 0.15
ACGTcount: A:0.21, C:0.00, G:0.35, T:0.45
Consensus pattern (7 bp):
TTTAGGG
Found at i:14477639 original size:50 final size:50
Alignment explanation
Indices: 14477580--14477691 Score: 116
Period size: 50 Copynumber: 2.2 Consensus size: 50
14477570 GAGTTACTAT
* * * **
14477580 TTTAAGGTTTATGGATTATGGTTTAAGGGTTAGGGTTTAAGATTTAGGGG
1 TTTAGGGTTTAGGGATTATGGTTTAAGAGTTAGGGTTTAAGAGATAGGGG
* * * * * * *
14477630 TTTAGGGTTTAGGGTTTATGTTTTATGATTTATGGTTTAGGGGATAGGGG
1 TTTAGGGTTTAGGGATTATGGTTTAAGAGTTAGGGTTTAAGAGATAGGGG
14477680 TTTAGGGTTTAG
1 TTTAGGGTTTAG
14477692 ATTAATTAGT
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.21, C:0.00, G:0.35, T:0.45
Consensus pattern (50 bp):
TTTAGGGTTTAGGGATTATGGTTTAAGAGTTAGGGTTTAAGAGATAGGGG
Found at i:14477654 original size:14 final size:14
Alignment explanation
Indices: 14477531--14477690 Score: 81
Period size: 14 Copynumber: 11.2 Consensus size: 14
14477521 TTAATTATCA
*
14477531 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
* *
14477545 ATATAGTTTAGGGT
1 TTATGGTTTAGGGT
** *
14477559 TTAAAGTTTATGAGT
1 TTATGGTTTA-GGGT
*
14477574 TACTAT--TTTAAGGT
1 T--TATGGTTTAGGGT
* *
14477588 TTATGGATTATGGT
1 TTATGGTTTAGGGT
* *
14477602 TTAAGGGTTAGGGT
1 TTATGGTTTAGGGT
* *
14477616 TTAAGATTTAGGGGT
1 TTATGGTTTA-GGGT
*
14477631 TTAGGGTTTAGGGT
1 TTATGGTTTAGGGT
* * *
14477645 TTATGTTTTATGAT
1 TTATGGTTTAGGGT
*
14477659 TTATGGTTTAGGGG
1 TTATGGTTTAGGGT
* *
14477673 ATAGGGGTTTAGGGT
1 TTA-TGGTTTAGGGT
14477688 TTA
1 TTA
14477691 GATTAATTAG
Statistics
Matches: 111, Mismatches: 28, Indels: 13
0.73 0.18 0.09
Matches are distributed among these distances:
12 3 0.03
14 75 0.68
15 31 0.28
17 2 0.02
ACGTcount: A:0.23, C:0.01, G:0.31, T:0.46
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:14477654 original size:29 final size:28
Alignment explanation
Indices: 14477599--14477671 Score: 76
Period size: 29 Copynumber: 2.6 Consensus size: 28
14477589 TATGGATTAT
14477599 GGTTTAAGGG-TTAGGGTTTAAGATTTAGG
1 GGTTT-AGGGTTTAGGGTTTAAGATTTA-G
* * *
14477628 GGTTTAGGGTTTAGGGTTTATGTTTTAT
1 GGTTTAGGGTTTAGGGTTTAAGATTTAG
* *
14477656 GATTTATGGTTTAGGG
1 GGTTTAGGGTTTAGGG
14477672 GATAGGGGTT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
28 18 0.47
29 20 0.53
ACGTcount: A:0.19, C:0.00, G:0.36, T:0.45
Consensus pattern (28 bp):
GGTTTAGGGTTTAGGGTTTAAGATTTAG
Found at i:14478690 original size:16 final size:16
Alignment explanation
Indices: 14478665--14478698 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
14478655 TTGTTTTTCT
*
14478665 ATGGATTAGAGGTGTA
1 ATGGAATAGAGGTGTA
14478681 ATGGAATAGAGGTGTA
1 ATGGAATAGAGGTGTA
14478697 AT
1 AT
14478699 AGCATAATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29
Consensus pattern (16 bp):
ATGGAATAGAGGTGTA
Found at i:14478865 original size:16 final size:16
Alignment explanation
Indices: 14478828--14478869 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
14478818 TTAATCATAT
*
14478828 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
14478844 TT-AAATATATTATAA
1 TTAAAATATATTATAA
14478859 TTAAAATATAT
1 TTAAAATATAT
14478870 AATTTACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:14479129 original size:13 final size:13
Alignment explanation
Indices: 14479111--14479137 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14479101 TGAATAAAAG
14479111 TATATGGTTGGAT
1 TATATGGTTGGAT
14479124 TATATGGTTGGAT
1 TATATGGTTGGAT
14479137 T
1 T
14479138 TCTAAGGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.48
Consensus pattern (13 bp):
TATATGGTTGGAT
Found at i:14484969 original size:43 final size:44
Alignment explanation
Indices: 14484922--14485192 Score: 261
Period size: 43 Copynumber: 6.3 Consensus size: 44
14484912 GAACGGTACT
* * *
14484922 TTTAGCGGA-GTTTGTGATAAAAGTGTCGCTAAAGGTCATGCTC
1 TTTAGCGGACGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
* * *
14484965 TTTAGC-GACGTTTGTGATAAAAGCACCGCTAAAGATCATGTTTT
1 TTTAGCGGACGTTTGTGATAAAAGCGCCGCTAAAGGTCATG-TTC
* * * * * * **
14485009 TTTAGC-AACGTTTGGGTTAAAAGTGTCGTTAAATATCATGTTC
1 TTTAGCGGACGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
* *
14485052 TTTAGCGG-CGTTTGTGATAAAAGCGCCGCTTAAGGTCATGTTT
1 TTTAGCGGACGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
* * * *
14485095 TTTAGCGG-CGTTTGTTGGTAAAA-TGTCGTTAAAGGTCATGTTC
1 TTTAGCGGACGTTTG-TGATAAAAGCGCCGCTAAAGGTCATGTTC
* *
14485138 TTTAGC-GACGTTTATTATAAAAGCGCCGCTAAAGGTCATGTTC
1 TTTAGCGGACGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
*
14485181 TATAGC-GACGTT
1 TTTAGCGGACGTT
14485193 GTCTATAGCA
Statistics
Matches: 184, Mismatches: 38, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
42 9 0.05
43 135 0.73
44 40 0.22
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.35
Consensus pattern (44 bp):
TTTAGCGGACGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
Found at i:14485150 original size:86 final size:86
Alignment explanation
Indices: 14484921--14485179 Score: 351
Period size: 87 Copynumber: 3.0 Consensus size: 86
14484911 AGAACGGTAC
* * * *
14484921 TTTTAGCGGAGTTTGTGATAAAAGTGTCGCTAAAGGTCATGCTCTTTAGCGACGTTTGTGATAAA
1 TTTTAGCGGCGTTTGTGGTAAAAGTGTCGTTAAAGGTCATGTTCTTTAGCGACGTTTGTGATAAA
* *
14484986 AGCACCGCTAAAGATCATGTTT
66 AGCGCCGCTAAAGGTCATG-TT
** ** *
14485008 TTTTAGCAACGTTTG-GGTTAAAAGTGTCGTTAAATATCATGTTCTTTAGCGGCGTTTGTGATAA
1 TTTTAGCGGCGTTTGTGG-TAAAAGTGTCGTTAAAGGTCATGTTCTTTAGCGACGTTTGTGATAA
*
14485072 AAGCGCCGCTTAAGGTCATGTT
65 AAGCGCCGCTAAAGGTCATGTT
* *
14485094 TTTTAGCGGCGTTTGTTGGTAAAA-TGTCGTTAAAGGTCATGTTCTTTAGCGACGTTTATTATAA
1 TTTTAGCGGCGTTTG-TGGTAAAAGTGTCGTTAAAGGTCATGTTCTTTAGCGACGTTTGTGATAA
14485158 AAGCGCCGCTAAAGGTCATGTT
65 AAGCGCCGCTAAAGGTCATGTT
14485180 CTATAGCGAC
Statistics
Matches: 149, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
86 72 0.48
87 75 0.50
88 2 0.01
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.36
Consensus pattern (86 bp):
TTTTAGCGGCGTTTGTGGTAAAAGTGTCGTTAAAGGTCATGTTCTTTAGCGACGTTTGTGATAAA
AGCGCCGCTAAAGGTCATGTT
Found at i:14485187 original size:86 final size:86
Alignment explanation
Indices: 14484921--14485192 Score: 352
Period size: 86 Copynumber: 3.2 Consensus size: 86
14484911 AGAACGGTAC
* * *
14484921 TTTTAGCGGA-GTTTGTGATAAAAGTGTCGCTAAAGGTCATGCTCTTTAGCGACGTTTGTGATAA
1 TTTTAGC-GACGTTTGTGGTAAAAGTGTCGTTAAAGGTCATGTTCTTTAGCGACGTTTGTGATAA
* *
14484985 AAGCACCGCTAAAGATCATGTTT
65 AAGCGCCGCTAAAGGTCATG-TT
* ** *
14485008 TTTTAGCAACGTTTG-GGTTAAAAGTGTCGTTAAATATCATGTTCTTTAGCGGCGTTTGTGATAA
1 TTTTAGCGACGTTTGTGG-TAAAAGTGTCGTTAAAGGTCATGTTCTTTAGCGACGTTTGTGATAA
*
14485072 AAGCGCCGCTTAAGGTCATGTT
65 AAGCGCCGCTAAAGGTCATGTT
* * *
14485094 TTTTAGCGGCGTTTGTTGGTAAAA-TGTCGTTAAAGGTCATGTTCTTTAGCGACGTTTATTATAA
1 TTTTAGCGACGTTTG-TGGTAAAAGTGTCGTTAAAGGTCATGTTCTTTAGCGACGTTTGTGATAA
14485158 AAGCGCCGCTAAAGGTCATGTT
65 AAGCGCCGCTAAAGGTCATGTT
* *
14485180 CTATAGCGACGTT
1 TTTTAGCGACGTT
14485193 GTCTATAGCA
Statistics
Matches: 160, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
86 83 0.52
87 75 0.47
88 2 0.01
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (86 bp):
TTTTAGCGACGTTTGTGGTAAAAGTGTCGTTAAAGGTCATGTTCTTTAGCGACGTTTGTGATAAA
AGCGCCGCTAAAGGTCATGTT
Found at i:14488156 original size:21 final size:22
Alignment explanation
Indices: 14488127--14488173 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
14488117 CAGAATGAGT
* *
14488127 GAGTAGTACTTCGCATCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
14488149 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
14488170 GAGT
1 GAGT
14488174 TTGAGCAGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.36, T:0.23
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:14498021 original size:21 final size:20
Alignment explanation
Indices: 14497958--14498022 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 20
14497948 CAAATTTATT
*
14497958 TTATTTTATATTTATTAAAAA
1 TTATTTTAT-TTTATCAAAAA
* * *
14497979 TTAATTTTA-TTAAACTAAAA
1 TT-ATTTTATTTTATCAAAAA
14497999 TTATTTTATTTTTATCAAAAA
1 TTATTTTA-TTTTATCAAAAA
14498020 TTA
1 TTA
14498023 AAATATATTA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
19 6 0.18
20 9 0.26
21 13 0.38
22 6 0.18
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (20 bp):
TTATTTTATTTTATCAAAAA
Found at i:14498628 original size:27 final size:27
Alignment explanation
Indices: 14498588--14498656 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
14498578 TTTTATTTTA
* * *
14498588 TTCTTTTTCCTTTTTCTTTCCTTCCCT
1 TTCTTTCTCCTTTTCCATTCCTTCCCT
*
14498615 TTCTTTCTCTTTTTCCATTCCTTCCCT
1 TTCTTTCTCCTTTTCCATTCCTTCCCT
14498642 TCTCTTT-TCCTTTTC
1 T-TCTTTCTCCTTTTC
14498657 TCTCATTCCC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
27 31 0.86
28 5 0.14
ACGTcount: A:0.01, C:0.35, G:0.00, T:0.64
Consensus pattern (27 bp):
TTCTTTCTCCTTTTCCATTCCTTCCCT
Found at i:14498637 original size:22 final size:22
Alignment explanation
Indices: 14498604--14498653 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
14498594 TTCCTTTTTC
* *
14498604 TTTCCTTCCCTTTCTTTCTCTT
1 TTTCCTTCCCTTCCCTTCTCTT
14498626 TTTCCATT-CCTTCCCTTCTC-T
1 TTTCC-TTCCCTTCCCTTCTCTT
14498647 TTTCCTT
1 TTTCCTT
14498654 TTCTCTCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 2 0.08
21 6 0.24
22 15 0.60
23 2 0.08
ACGTcount: A:0.02, C:0.38, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTCCTTCCCTTCCCTTCTCTT
Found at i:14498665 original size:26 final size:26
Alignment explanation
Indices: 14498588--14498666 Score: 74
Period size: 27 Copynumber: 3.0 Consensus size: 26
14498578 TTTTATTTTA
*
14498588 TTCT-TTTTCCTTTTTCTTTCCTTCCC
1 TTCTCTTTTCC-TTTTCTCTCCTTCCC
*
14498614 TT-TCTTTCTCTTTTTC-CATTCCTTCCC
1 TTCTCTTT-TCCTTTTCTC--TCCTTCCC
*
14498641 TTCTCTTTTCCTTTTCTCTCATTCCC
1 TTCTCTTTTCCTTTTCTCTCCTTCCC
14498667 ATCCATCCAG
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
25 1 0.02
26 17 0.40
27 19 0.44
28 6 0.14
ACGTcount: A:0.03, C:0.37, G:0.00, T:0.61
Consensus pattern (26 bp):
TTCTCTTTTCCTTTTCTCTCCTTCCC
Found at i:14499088 original size:19 final size:20
Alignment explanation
Indices: 14499054--14499100 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
14499044 TAGATTTTTT
** *
14499054 TTATAAAAATTGT-AAAATA
1 TTATAAAAATCATAAAAAAA
14499073 TTATAAAAATCATAAAAAAA
1 TTATAAAAATCATAAAAAAA
14499093 TTATAAAA
1 TTATAAAA
14499101 TGGATCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (20 bp):
TTATAAAAATCATAAAAAAA
Found at i:14499381 original size:9 final size:9
Alignment explanation
Indices: 14499352--14499451 Score: 60
Period size: 10 Copynumber: 10.6 Consensus size: 9
14499342 CTTTATAAAA
14499352 TTTTATAAT
1 TTTTATAAT
14499361 TTTT-TACGAT
1 TTTTATA--AT
14499371 TTTTATAATT
1 TTTTATAA-T
*
14499381 TTTTCTAAT
1 TTTTATAAT
14499390 TTTTATTAAT
1 TTTTA-TAAT
*
14499400 ATTTAATAAT
1 -TTTTATAAT
* *
14499410 ATTTATAGT
1 TTTTATAAT
*
14499419 TTTTATTGAT
1 TTTTA-TAAT
* *
14499429 TTTAAT-TT
1 TTTTATAAT
14499437 TTTATATAAT
1 TTT-TATAAT
14499447 TTTTA
1 TTTTA
14499452 AATCAAGGGC
Statistics
Matches: 69, Mismatches: 13, Indels: 18
0.69 0.13 0.18
Matches are distributed among these distances:
8 6 0.09
9 25 0.36
10 32 0.46
11 6 0.09
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:14499391 original size:19 final size:19
Alignment explanation
Indices: 14499352--14499395 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
14499342 CTTTATAAAA
*
14499352 TTTTATAATTTTTTACGAT
1 TTTTATAATTTTTTACAAT
14499371 TTTTATAATTTTTT-CTAAT
1 TTTTATAATTTTTTAC-AAT
14499390 TTTTAT
1 TTTTAT
14499396 TAATATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 1 0.04
19 22 0.96
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.68
Consensus pattern (19 bp):
TTTTATAATTTTTTACAAT
Found at i:14506619 original size:12 final size:12
Alignment explanation
Indices: 14506598--14506632 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
14506588 GGATTGCAAG
14506598 TTTCCATTTTTA
1 TTTCCATTTTTA
* *
14506610 TTTTCATTTTCA
1 TTTCCATTTTTA
14506622 TTTCCATTTTT
1 TTTCCATTTTT
14506633 GGAAACCTAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTCCATTTTTA
Found at i:14517000 original size:181 final size:181
Alignment explanation
Indices: 14516792--14517240 Score: 641
Period size: 181 Copynumber: 2.5 Consensus size: 181
14516782 CAGATCTTAT
* *
14516792 CAAACCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGATATAAATTACCGATCTTATCTCT
1 CAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACCGATCTTATCTCT
* * * *
14516857 TTGAAGTTGCAGTAGAGCAGATCATATCAAACTTTATCTCCCTGAAA-TTACAGTGGGGCAGGTT
66 CTGAAGTTGCAGTAGAGCAGATCATATCAAACCTCATCTCCCT-AAAGTTACAGTGCGGCAGGTT
* * *
14516921 GAAATTACGAGTCTTATCTCACTGAAGTTGCAGTGGAGCAGACTGAAGACAG
130 GAAATTACGAGTCTTATCTCACTGAAGTTACAGTAGAGCAGACTGAAAACAG
* * * *
14516973 CGAATCTTATTTCCCTGAAGTTGCAGTGAAACAGATTGAAGCTATAAAATACCGATCCTATCTCT
1 CAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACCGATCTTATCTCT
** * **
14517038 CTGAAGTTATAGTAGAGTAGATCATATCAAACCTCATCTCCCTAAAGTTGTAGTGCGGCAGGTTG
66 CTGAAGTTGCAGTAGAGCAGATCATATCAAACCTCATCTCCCTAAAGTTACAGTGCGGCAGGTTG
* * *
14517103 AAATTATGAGTCTTATCTCCCTGAAGTTACAGTAGAGCAGACTGAAAATAG
131 AAATTACGAGTCTTATCTCACTGAAGTTACAGTAGAGCAGACTGAAAACAG
** *
14517154 CAAATCTTATTTTTCTGAAGTTGCAGTGGAACAGATT-AAGGCTATAAATTACAGATCTTATCTC
1 CAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAA-GCTATAAATTACCGATCTTATCTC
*
14517218 TCTGAAGTTGCAGTGGAGCAGAT
65 TCTGAAGTTGCAGTAGAGCAGAT
14517241 TGAAGTTACT
Statistics
Matches: 234, Mismatches: 32, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
180 5 0.02
181 229 0.98
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (181 bp):
CAAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAATTACCGATCTTATCTCT
CTGAAGTTGCAGTAGAGCAGATCATATCAAACCTCATCTCCCTAAAGTTACAGTGCGGCAGGTTG
AAATTACGAGTCTTATCTCACTGAAGTTACAGTAGAGCAGACTGAAAACAG
Found at i:14517304 original size:44 final size:45
Alignment explanation
Indices: 14517206--14517328 Score: 114
Period size: 44 Copynumber: 2.8 Consensus size: 45
14517196 TATAAATTAC
* * *
14517206 AGATCTTATC-TCTCTGAAGTTGCAGTGGAGCAGATTGAAGTTACT
1 AGATCTTATCTTC-CTGAAGTTGCAGTGAAGCAGATTAAAGTGACT
* *
14517251 AG-TCCTATCTTCCTGAAGTTGCAGTGAAGCGGATTAAAAG-GA-T
1 AGATCTTATCTTCCTGAAGTTGCAGTGAAGCAGATT-AAAGTGACT
*
14517294 AGATCTTATCTCTCC-AAAGTTGCAGT-AGAGCAGAT
1 AGATCTTATCT-TCCTGAAGTTGCAGTGA-AGCAGAT
14517329 CGCATCAGAC
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
43 4 0.06
44 51 0.78
45 10 0.15
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (45 bp):
AGATCTTATCTTCCTGAAGTTGCAGTGAAGCAGATTAAAGTGACT
Found at i:14517456 original size:41 final size:41
Alignment explanation
Indices: 14517353--14517481 Score: 132
Period size: 41 Copynumber: 3.0 Consensus size: 41
14517343 TTGAAGCTAC
* ** *
14517353 AAGTCTTATCTCACTGAGGTTGCAGTAGAATAGATTGAAGAT
1 AAGTCTTATCTCACTGAAGTTGCAGTAGAGCAGA-TCAAGAT
* *
14517395 AGCAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACGAT
1 A--AG-TCTTATCTCACTGAAGTTGCAGTAGAGCAGATCAAGAT
* * * *
14517439 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAAT
1 AAGTCTTATCTCACTGAAGTTGCAGTAGAGCAGATCAAGAT
14517480 AA
1 AA
14517482 TGAATCCTAT
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
41 35 0.48
42 3 0.04
44 8 0.11
45 27 0.37
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (41 bp):
AAGTCTTATCTCACTGAAGTTGCAGTAGAGCAGATCAAGAT
Found at i:14517645 original size:43 final size:44
Alignment explanation
Indices: 14517597--14517754 Score: 126
Period size: 44 Copynumber: 3.6 Consensus size: 44
14517587 CAAATCGAAC
* * * *
14517597 CTTATCTCCCTGTAG-TGCAGTGGAGCATGTTGGAACA-ATAAGT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGGTT-GAACATACAAGT
* *
14517640 CTTATCTCCTTGAAGTTACAGTGGAGCAGGTTGAAGATACAAGT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAACATACAAGT
* * ** ***
14517684 CTTATCTCCCTAAACTTGTAGTGGAGCATACTGAAGC-TACTAA-T
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAA-CATAC-AAGT
* *
14517728 CCTATCTCCCTGAAGTTATAGTGGAGC
1 CTTATCTCCCTGAAGTTACAGTGGAGC
14517755 TGATTCAAGC
Statistics
Matches: 92, Mismatches: 19, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
43 17 0.18
44 73 0.79
45 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTACAGTGGAGCAGGTTGAACATACAAGT
Found at i:14520319 original size:23 final size:22
Alignment explanation
Indices: 14520276--14520333 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
14520266 AAAGGGTATG
* *
14520276 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
14520297 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
14520320 TACATATCATATCT
1 TACAAATCATATCT
14520334 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:14520336 original size:19 final size:19
Alignment explanation
Indices: 14520289--14520365 Score: 100
Period size: 19 Copynumber: 3.8 Consensus size: 19
14520279 AAATTAAATC
*
14520289 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
14520309 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
14520331 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
14520350 TCTAAGATTACATATC
1 TCTAAGATTACATATC
14520366 CTCGAAGATT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 33 0.65
22 7 0.14
23 11 0.22
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.36
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:14521035 original size:132 final size:132
Alignment explanation
Indices: 14520875--14522028 Score: 2049
Period size: 132 Copynumber: 8.8 Consensus size: 132
14520865 GAGATAGGAT
* * * *
14520875 TTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTTCTGTTTTTGATCTGCTCC
1 TTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCC
* * *
14520940 ACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAG
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTTAGGGAGACAAG
14521005 GC
131 GC
* * *
14521007 TTTGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATCTGCTCC
1 TTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCC
14521072 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTTAGGGAGACAAG
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTTAGGGAGACAAG
14521137 GC
131 GC
*
14521139 TTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTACTCC
1 TTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCC
14521204 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTTAGGGAGACAAG
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTTAGGGAGACAAG
14521269 GC
131 GC
*
14521271 TTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTACTCC
1 TTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCC
14521336 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTTAGGGAGACAAG
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTTAGGGAGACAAG
14521401 GC
131 GC
*
14521403 TTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTACTCC
1 TTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCC
14521468 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTTAGGGAGACAAG
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTTAGGGAGACAAG
14521533 GC
131 GC
14521535 TTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCC
1 TTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCC
* * *
14521600 ACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAG
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTTAGGGAGACAAG
14521665 GC
131 GC
* * *
14521667 TTTGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATCTGCTCC
1 TTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCC
14521732 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTTAGGGAGACAAG
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTTAGGGAGACAAG
14521797 GC
131 GC
*
14521799 TTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTACTCC
1 TTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCC
* * * *
14521864 ACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCGCTGTTGCTCAAGGAGACAAG
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTTAGGGAGACAAG
14521929 GC
131 GC
* * *
14521931 TTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTTC
1 TTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCC
*
14521996 ACTACTGCTTAAGGAGATAAGATCTAC-ATCTTC
66 ACTACTGCTTAGGGAGATAAGATCTACAATCTTC
14522029 GATCAACTTC
Statistics
Matches: 986, Mismatches: 36, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
131 5 0.01
132 981 0.99
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.32
Consensus pattern (132 bp):
TTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCC
ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTTAGGGAGACAAG
GC
Found at i:14521245 original size:88 final size:88
Alignment explanation
Indices: 14521153--14521509 Score: 214
Period size: 88 Copynumber: 4.1 Consensus size: 88
14521143 TGGCTTAAAT
*
14521153 CTACTTCCCACTATCTT-GGAAAGATAAGATTTGCCGTCTTTGATCTACTCCACTACTGCTTAGG
1 CTACTTCCCACTATCTTAGG-AAGATAAGATTTGCCGTCTTTAATCTACTCCACTACTGCTTAGG
14521217 GAGATAAGATCTACAATCTTCAAC
65 GAGATAAGATCTACAATCTTCAAC
* * * * ** ** * *
14521241 CTAC-TCCGCTGCT-GCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTACTTCCCACTA-T-CTT
1 CTACTTCC-C-ACTATCTTAGGAAGATAAGATTTGCCGTCTTTAATCTAC-T-CCACTACTGCTT
* * * ** ** *
14521302 -GGAAAGATAAGATTTGCCGTCTTTGAT
62 AGG-GAGATAAGATCTACAATCTTCAAC
* * * ** * * * *
14521329 CTAC-T-CCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTTAG
1 CTACTTCCCACTA-T-CTTAGGAAGATAAGATTTGCCGTCTTTAATCTACTCCACTACTGCTTAG
* * *** * *
14521392 GGAGACAAG-GCT-TGGTGGCTTAAAT
64 GGAGATAAGATCTACAAT--CTTCAAC
*
14521417 CTACTTCCCACTATCTT-GGAAAGATAAGATTTGCCGTCTTTGATCTACTCCACTACTGCTTAGG
1 CTACTTCCCACTATCTTAGG-AAGATAAGATTTGCCGTCTTTAATCTACTCCACTACTGCTTAGG
14521481 GAGATAAGATCTACAATCTTCAAC
65 GAGATAAGATCTACAATCTTCAAC
14521505 CTACT
1 CTACT
14521510 CCGCTGCTGC
Statistics
Matches: 191, Mismatches: 59, Indels: 38
0.66 0.20 0.13
Matches are distributed among these distances:
85 2 0.01
86 7 0.04
87 11 0.06
88 146 0.76
89 12 0.06
90 13 0.07
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (88 bp):
CTACTTCCCACTATCTTAGGAAGATAAGATTTGCCGTCTTTAATCTACTCCACTACTGCTTAGGG
AGATAAGATCTACAATCTTCAAC
Found at i:14522076 original size:44 final size:45
Alignment explanation
Indices: 14522014--14522239 Score: 266
Period size: 44 Copynumber: 5.2 Consensus size: 45
14522004 TTAAGGAGAT
* *
14522014 AAGATCTAC-ATCTTCGATCAACTTC-CTACCAATATAGGAAGAT
1 AAGATCTGCTATCTTCGATCAACTTCACTACCAATATAGGAAGAC
* * * *
14522057 AGGATCTGCTATCTTCGATCAACTTCAC-GCCAATACATGAAGAC
1 AAGATCTGCTATCTTCGATCAACTTCACTACCAATATAGGAAGAC
* * * *
14522101 AAGATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGAC
1 AAGATCTGCTATCTTCGATCAACTTCACTACCAATATAGGAAGAC
*
14522146 AAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGAC
1 AAGATCTGCTATCTTCGATCAACTTCACTACCAATATAGGAAGAC
* * * * *
14522189 AGGATCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGAC
1 AAGATCTGCTATCTTCGATCAACTTCACTACCAATATAGGAAGAC
14522233 AAGATCT
1 AAGATCT
14522240 ACTTTTTCAC
Statistics
Matches: 155, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
43 31 0.20
44 101 0.65
45 23 0.15
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (45 bp):
AAGATCTGCTATCTTCGATCAACTTCACTACCAATATAGGAAGAC
Found at i:14527486 original size:23 final size:22
Alignment explanation
Indices: 14527443--14527500 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
14527433 AAAGGGTATC
* *
14527443 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
14527464 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
14527487 TACATATCATATCT
1 TACAAATCATATCT
14527501 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:14527503 original size:19 final size:19
Alignment explanation
Indices: 14527456--14527553 Score: 106
Period size: 19 Copynumber: 4.8 Consensus size: 19
14527446 AAATTAAATC
*
14527456 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
14527476 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
14527498 TCTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
*
14527519 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
*
14527538 TCTAAAATTACATATC
1 TCTAAGATTACATATC
14527554 CTCGAAGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
19 31 0.46
21 18 0.27
22 7 0.10
23 11 0.16
ACGTcount: A:0.41, C:0.16, G:0.06, T:0.37
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:14527516 original size:21 final size:21
Alignment explanation
Indices: 14527490--14527552 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
14527480 CTAAGATTAC
14527490 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
14527511 ATATCATATCTAAGATTGC--
1 ATATCATATCTAAGATTGCAT
* *
14527530 ATATCATATCTAAAATTACAT
1 ATATCATATCTAAGATTGCAT
14527551 AT
1 AT
14527553 CCTCGAAGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
19 17 0.45
21 21 0.55
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.38
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:14533376 original size:3 final size:3
Alignment explanation
Indices: 14533368--14533399 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
14533358 ATCACATGTT
14533368 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14533400 TGGGTGTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Done.