Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 49 of 205
Found at i:14533463 original size:3 final size:3
Alignment explanation
Indices: 14533455--14534155 Score: 1402
Period size: 3 Copynumber: 233.7 Consensus size: 3
14533445 ATCACATGTT
14533455 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14533503 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14533551 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14533599 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14533647 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14533695 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14533743 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14533791 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14533839 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14533887 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14533935 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14533983 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14534031 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14534079 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14534127 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14534156 TGGGTGTAAT
Statistics
Matches: 698, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 698 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14535235 original size:64 final size:63
Alignment explanation
Indices: 14535138--14535265 Score: 204
Period size: 64 Copynumber: 2.0 Consensus size: 63
14535128 AAGAAGATGA
*
14535138 ATTCAATTATTCAAGGGGGGGGGGGGGGGGTAGACTTCAGCAAATGCTAAGACACAGAAGAAC
1 ATTCAATTATTCAAGGGGGGGGGGGGGGAGTAGACTTCAGCAAATGCTAAGACACAGAAGAAC
* *
14535201 ATTCAA-TATTTCGAGGGGGGGGGGGGTGGAGTAGACTTCAGCATATGCTAAGACACAGAAGAAC
1 ATTCAATTA-TTCAAGGGGGGGGGGGG-GGAGTAGACTTCAGCAAATGCTAAGACACAGAAGAAC
14535265 A
1 A
14535266 CAATCACGTT
Statistics
Matches: 60, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
62 2 0.03
63 22 0.37
64 36 0.60
ACGTcount: A:0.33, C:0.14, G:0.34, T:0.19
Consensus pattern (63 bp):
ATTCAATTATTCAAGGGGGGGGGGGGGGAGTAGACTTCAGCAAATGCTAAGACACAGAAGAAC
Found at i:14552602 original size:25 final size:25
Alignment explanation
Indices: 14552565--14552615 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
14552555 TCCAACCTAG
14552565 TTACCATGCATGGGGAAAGATTCTT
1 TTACCATGCATGGGGAAAGATTCTT
*
14552590 TTACCATGTATGGGGAAAGATTCTT
1 TTACCATGCATGGGGAAAGATTCTT
14552615 T
1 T
14552616 CCTTGTGTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (25 bp):
TTACCATGCATGGGGAAAGATTCTT
Found at i:14553996 original size:47 final size:47
Alignment explanation
Indices: 14553927--14554035 Score: 182
Period size: 47 Copynumber: 2.3 Consensus size: 47
14553917 AAGGTGGACG
* * *
14553927 TTATTGGCATTTTTTCTACGATTTTGGTGGCTTGTCCACGATTTTGA
1 TTATTGGCAGTTTATCTACGATTTTGGTGGCTTGTCCACAATTTTGA
*
14553974 TTATTGGCAGTTTATCTGCGATTTTGGTGGCTTGTCCACAATTTTGA
1 TTATTGGCAGTTTATCTACGATTTTGGTGGCTTGTCCACAATTTTGA
14554021 TTATTGGCAGTTTAT
1 TTATTGGCAGTTTAT
14554036 TTGCATTACT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 58 1.00
ACGTcount: A:0.17, C:0.14, G:0.22, T:0.48
Consensus pattern (47 bp):
TTATTGGCAGTTTATCTACGATTTTGGTGGCTTGTCCACAATTTTGA
Found at i:14554061 original size:47 final size:47
Alignment explanation
Indices: 14553927--14554064 Score: 118
Period size: 47 Copynumber: 2.9 Consensus size: 47
14553917 AAGGTGGACG
* * * * * * * *
14553927 TTATTGGCATTTTTTCTACGATTTTGGTGGCTTGTCCACGATTTTGA
1 TTATTGGCAGTTTATCTGCGATTCTGGTGACCTATCCACAATTTTGA
* * * *
14553974 TTATTGGCAGTTTATCTGCGATTTTGGTGGCTTGTCCACAATTTTGA
1 TTATTGGCAGTTTATCTGCGATTCTGGTGACCTATCCACAATTTTGA
* *
14554021 TTATTGGCAGTTTATTTGC-ATTACT-GTGACACTATTCACAATTT
1 TTATTGGCAGTTTATCTGCGATT-CTGGTGAC-CTATCCACAATTT
14554065 GGTGTGTTAT
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
46 7 0.09
47 72 0.91
ACGTcount: A:0.19, C:0.15, G:0.20, T:0.46
Consensus pattern (47 bp):
TTATTGGCAGTTTATCTGCGATTCTGGTGACCTATCCACAATTTTGA
Found at i:14573477 original size:21 final size:20
Alignment explanation
Indices: 14573435--14573477 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
14573425 GGATGATTGT
**
14573435 TTTGGCATGTTTTGAATGTG
1 TTTGGCATGTTTTGAACATG
14573455 TTTGGTCATGTTTTGAACATG
1 TTTGG-CATGTTTTGAACATG
14573476 TT
1 TT
14573478 AAATGAATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.16, C:0.07, G:0.26, T:0.51
Consensus pattern (20 bp):
TTTGGCATGTTTTGAACATG
Found at i:14583332 original size:12 final size:12
Alignment explanation
Indices: 14583312--14583346 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
14583302 ATGCCCATGT
*
14583312 TCGATCACACGG
1 TCGACCACACGG
14583324 TCGACCACACGG
1 TCGACCACACGG
*
14583336 GCGACCACACG
1 TCGACCACACG
14583347 CCTGTGTGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.26, C:0.40, G:0.26, T:0.09
Consensus pattern (12 bp):
TCGACCACACGG
Found at i:14590223 original size:11 final size:11
Alignment explanation
Indices: 14590209--14590254 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
14590199 TAAATATGCT
*
14590209 ATAAAAAGAAA
1 ATAAAAATAAA
*
14590220 ATAAAAACAAA
1 ATAAAAATAAA
*
14590231 AGTCAAAATAAA
1 A-TAAAAATAAA
14590243 ATAAAAATAAA
1 ATAAAAATAAA
14590254 A
1 A
14590255 ATCATTGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
11 21 0.70
12 9 0.30
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.13
Consensus pattern (11 bp):
ATAAAAATAAA
Found at i:14595619 original size:28 final size:28
Alignment explanation
Indices: 14595583--14595637 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
14595573 GAAAAAATTA
14595583 AATTGTTTTAAAAAAT-AAAAATATAGG
1 AATTGTTTTAAAAAATAAAAAATATAGG
*
14595610 AATTAGTTTTAACAAATAAAAAATATAG
1 AATT-GTTTTAAAAAATAAAAAATATAG
14595638 AAAAAATACG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 4 0.16
28 11 0.44
29 10 0.40
ACGTcount: A:0.56, C:0.02, G:0.09, T:0.33
Consensus pattern (28 bp):
AATTGTTTTAAAAAATAAAAAATATAGG
Found at i:14595692 original size:41 final size:41
Alignment explanation
Indices: 14595629--14595706 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 41
14595619 TAACAAATAA
*
14595629 AAAATATAGAAAAAATACGTT-AAAGAAATAGAAAAGAGAGG
1 AAAATATAGAAAAAATAAGTTAAAAG-AATAGAAAAGAGAGG
* *
14595670 AAAATA-ATAAAAAATAAAGTTAAAAGAATATAAAAGA
1 AAAATATAGAAAAAAT-AAGTTAAAAGAATAGAAAAGA
14595707 AAAAAAATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 8 0.25
41 20 0.62
42 4 0.12
ACGTcount: A:0.68, C:0.01, G:0.14, T:0.17
Consensus pattern (41 bp):
AAAATATAGAAAAAATAAGTTAAAAGAATAGAAAAGAGAGG
Found at i:14596821 original size:25 final size:22
Alignment explanation
Indices: 14596793--14596838 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
14596783 CAGTTTAACC
14596793 AATAGAAATTATCCAAATGCTTAAG
1 AATAG-AATT-TCCAAAT-CTTAAG
*
14596818 AATAGAGTTTCCAAATCTTAA
1 AATAGAATTTCCAAATCTTAA
14596839 ATTTTAACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 5 0.25
23 7 0.35
24 3 0.15
25 5 0.25
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (22 bp):
AATAGAATTTCCAAATCTTAAG
Found at i:14599775 original size:157 final size:157
Alignment explanation
Indices: 14599563--14599878 Score: 578
Period size: 157 Copynumber: 2.0 Consensus size: 157
14599553 ATTTTTGGAA
14599563 ATGACAATGCAATGATCTGGACTTTTGTTTGCCTTCAAAAGCATTGAATTGAGATGCAAGCATGT
1 ATGACAATGCAATGATCTGGACTTTTGTTTGCCTTCAAAAGCATTGAATTGAGATGCAAGCATGT
14599628 TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTCGTATCATTCTCTGCATCA
66 TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTCGTATCATTCTCTGCATCA
14599693 TTTAGTTTGGTTAGATGTGCTCTTTAG
131 TTTAGTTTGGTTAGATGTGCTCTTTAG
* * * *
14599720 ATGACATTGTAATGTTCTGGACTTTTGTTTGCCTTCAAAAGCATTGAATTGAGATGCAATCATGT
1 ATGACAATGCAATGATCTGGACTTTTGTTTGCCTTCAAAAGCATTGAATTGAGATGCAAGCATGT
*
14599785 TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTTGTATCATTCTCTGCATCA
66 TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTCGTATCATTCTCTGCATCA
*
14599850 TTTAGTTTGGTTAGATGTTCTCTTTAG
131 TTTAGTTTGGTTAGATGTGCTCTTTAG
14599877 AT
1 AT
14599879 TACTCAACTG
Statistics
Matches: 153, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
157 153 1.00
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.40
Consensus pattern (157 bp):
ATGACAATGCAATGATCTGGACTTTTGTTTGCCTTCAAAAGCATTGAATTGAGATGCAAGCATGT
TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTCGTATCATTCTCTGCATCA
TTTAGTTTGGTTAGATGTGCTCTTTAG
Found at i:14600527 original size:5 final size:5
Alignment explanation
Indices: 14600517--14600556 Score: 64
Period size: 5 Copynumber: 8.0 Consensus size: 5
14600507 TAAAGAAAAA
14600517 GAAGG GAAGG GAAGG GAAGG GAAGGG GAAGG GAA-G GAAGG
1 GAAGG GAAGG GAAGG GAAGG GAA-GG GAAGG GAAGG GAAGG
14600557 TGAAAGAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 4 0.12
5 24 0.73
6 5 0.15
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (5 bp):
GAAGG
Found at i:14606915 original size:265 final size:265
Alignment explanation
Indices: 14606442--14606972 Score: 1053
Period size: 265 Copynumber: 2.0 Consensus size: 265
14606432 TGGTCCTTCT
14606442 AACTAGTAAATTTTAACTTATATTTGGAGTTTCATATGTTCATATCTTCATGTCAATATCCAATT
1 AACTAGTAAATTTTAACTTATATTTGGAGTTTCATATGTTCATATCTTCATGTCAATATCCAATT
14606507 TGAAGCTCTTGTTATGTGTATGGGCATGGGCTCGTTAGGGAAGAAAGTAATAAAGATTTCCTCAC
66 TGAAGCTCTTGTTATGTGTATGGGCATGGGCTCGTTAGGGAAGAAAGTAATAAAGATTTCCTCAC
*
14606572 TGTACGACGAAGTGCCTTTTTTTCTCCCTCCCTAGTTACACTGGTTTGTTTCCATGTTTGGATTG
131 TGTACGACGAAGTGCCTTTTTTTCTCCCTCCCCAGTTACACTGGTTTGTTTCCATGTTTGGATTG
14606637 CATGCAAACCACATAGTTACATTACATATCAGTGCTGACACCTCGTTATTCATCTGAAAGGCACC
196 CATGCAAACCACATAGTTACATTACATATCAGTGCTGACACCTCGTTATTCATCTGAAAGGCACC
14606702 ATCTA
261 ATCTA
14606707 AACTAGTAAATTTTAACTTATATTTGGAGTTTCATATGTTCATATCTTCATGTCAATATCCAATT
1 AACTAGTAAATTTTAACTTATATTTGGAGTTTCATATGTTCATATCTTCATGTCAATATCCAATT
14606772 TGAAGCTCTTGTTATGTGTATGGGCATGGGCTCGTTAGGGAAGAAAGTAATAAAGATTTCCTCAC
66 TGAAGCTCTTGTTATGTGTATGGGCATGGGCTCGTTAGGGAAGAAAGTAATAAAGATTTCCTCAC
14606837 TGTACGACGAAGTGCCTTTTTTTCTCCCTCCCCAGTTACACTGGTTTGTTTCCATGTTTGGATTG
131 TGTACGACGAAGTGCCTTTTTTTCTCCCTCCCCAGTTACACTGGTTTGTTTCCATGTTTGGATTG
14606902 CATGCAAACCACATAGTTACATTACATATCAGTGCTGACACCTCGTTATTCATCTGAAAGGCACC
196 CATGCAAACCACATAGTTACATTACATATCAGTGCTGACACCTCGTTATTCATCTGAAAGGCACC
14606967 ATCTA
261 ATCTA
14606972 A
1 A
14606973 TAATATCGTC
Statistics
Matches: 265, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
265 265 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (265 bp):
AACTAGTAAATTTTAACTTATATTTGGAGTTTCATATGTTCATATCTTCATGTCAATATCCAATT
TGAAGCTCTTGTTATGTGTATGGGCATGGGCTCGTTAGGGAAGAAAGTAATAAAGATTTCCTCAC
TGTACGACGAAGTGCCTTTTTTTCTCCCTCCCCAGTTACACTGGTTTGTTTCCATGTTTGGATTG
CATGCAAACCACATAGTTACATTACATATCAGTGCTGACACCTCGTTATTCATCTGAAAGGCACC
ATCTA
Found at i:14609631 original size:18 final size:19
Alignment explanation
Indices: 14609608--14609648 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
14609598 TATTTTTTGC
*
14609608 ATTTTTTATAAA-ATAAATT
1 ATTTTTAATAAACAT-AATT
14609627 ATTTTTAATAAACATAATT
1 ATTTTTAATAAACATAATT
14609646 ATT
1 ATT
14609649 CATTTTCCGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTTTTAATAAACATAATT
Found at i:14613225 original size:8 final size:7
Alignment explanation
Indices: 14613197--14613222 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14613187 TATACTCATT
14613197 AAAAAGA
1 AAAAAGA
14613204 AAAAAGA
1 AAAAAGA
14613211 AAAAAGA
1 AAAAAGA
14613218 AAAAA
1 AAAAA
14613223 AGAGAGCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:14618994 original size:45 final size:47
Alignment explanation
Indices: 14618928--14619018 Score: 150
Period size: 45 Copynumber: 2.0 Consensus size: 47
14618918 AACCAAATAC
*
14618928 AAATAATTAATAATAAGTACTATGTAATTTAGTT-A-TATTTAGTAT
1 AAATAATTAATAATAAATACTATGTAATTTAGTTAATTATTTAGTAT
*
14618973 AAATAATTTATAATAAATACTATGTAATTTAGTTAATTATTTAGTA
1 AAATAATTAATAATAAATACTATGTAATTTAGTTAATTATTTAGTA
14619019 GGTTAAAATG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
45 32 0.76
46 1 0.02
47 9 0.21
ACGTcount: A:0.45, C:0.02, G:0.08, T:0.45
Consensus pattern (47 bp):
AAATAATTAATAATAAATACTATGTAATTTAGTTAATTATTTAGTAT
Found at i:14619115 original size:25 final size:27
Alignment explanation
Indices: 14619084--14619143 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 27
14619074 TGGGAGTAGT
* *
14619084 AAAATAACATA-TAATTA-TATTTTA-A
1 AAAATAAAATACT-ATTATTATTGTATA
14619109 AAAATAAAATACTATTATTATTGTATA
1 AAAATAAAATACTATTATTATTGTATA
14619136 AAAATAAA
1 AAAATAAA
14619144 TTTTAAAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 14 0.47
26 7 0.23
27 9 0.30
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (27 bp):
AAAATAAAATACTATTATTATTGTATA
Found at i:14637517 original size:21 final size:21
Alignment explanation
Indices: 14637491--14637546 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
14637481 AACAGAGGTG
*
14637491 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
*
14637512 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
*
14637533 GCGGTGAAATTAGA
1 GCGGTGAGATTAGA
14637547 AACAATGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.27, C:0.09, G:0.36, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:14641155 original size:30 final size:30
Alignment explanation
Indices: 14641086--14641261 Score: 279
Period size: 30 Copynumber: 5.9 Consensus size: 30
14641076 GAATATAAAC
14641086 TATA-TTTTTTATTTTTAAAATACACTACA
1 TATATTTTTTTATTTTTAAAATACACTACA
14641115 TATA--TTTTTATTTTTAAAATACACTACA
1 TATATTTTTTTATTTTTAAAATACACTACA
14641143 TATATTTTTTTATTTTTAAAATACACTACA
1 TATATTTTTTTATTTTTAAAATACACTACA
*
14641173 TATATTTTTTTTTATTTTTAAAGTACACTACA
1 TATA--TTTTTTTATTTTTAAAATACACTACA
*
14641205 TATATATTTTTATTTTTAAAATACACTACA
1 TATATTTTTTTATTTTTAAAATACACTACA
*
14641235 TATATATTTTT-TTTTTAAAATACACTA
1 TATATTTTTTTATTTTTAAAATACACTA
14641262 ATACAGTGCA
Statistics
Matches: 140, Mismatches: 3, Indels: 8
0.93 0.02 0.05
Matches are distributed among these distances:
28 28 0.20
29 20 0.14
30 63 0.45
32 29 0.21
ACGTcount: A:0.37, C:0.10, G:0.01, T:0.53
Consensus pattern (30 bp):
TATATTTTTTTATTTTTAAAATACACTACA
Found at i:14641216 original size:62 final size:61
Alignment explanation
Indices: 14641086--14641261 Score: 267
Period size: 62 Copynumber: 3.0 Consensus size: 61
14641076 GAATATAAAC
14641086 TATATTTTTTATTTTTAAAATACACTACATATA----TTTTTATTTTTAAAATACACTACA
1 TATATTTTTTATTTTTAAAATACACTACATATATTTTTTTTTATTTTTAAAATACACTACA
*
14641143 TATATTTTTTTATTTTTAAAATACACTACATATATTTTTTTTTATTTTTAAAGTACACTACA
1 TATA-TTTTTTATTTTTAAAATACACTACATATATTTTTTTTTATTTTTAAAATACACTACA
*
14641205 TATATATTTTTATTTTTAAAATACACTACATATA--TATTTTT-TTTTTAAAATACACTA
1 TATAT-TTTTTATTTTTAAAATACACTACATATATTTTTTTTTATTTTTAAAATACACTA
14641262 ATACAGTGCA
Statistics
Matches: 110, Mismatches: 3, Indels: 10
0.89 0.02 0.08
Matches are distributed among these distances:
57 4 0.04
58 29 0.26
59 15 0.14
60 6 0.05
61 1 0.01
62 55 0.50
ACGTcount: A:0.37, C:0.10, G:0.01, T:0.53
Consensus pattern (61 bp):
TATATTTTTTATTTTTAAAATACACTACATATATTTTTTTTTATTTTTAAAATACACTACA
Found at i:14641674 original size:23 final size:23
Alignment explanation
Indices: 14641646--14641691 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
14641636 TAAATTCCCA
*
14641646 TTTTCGTTTGATCATTTGGGTAT
1 TTTTCGTTTCATCATTTGGGTAT
14641669 TTTTCGTTTCATCATTTGGGTAT
1 TTTTCGTTTCATCATTTGGGTAT
14641692 CTATTATTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.13, C:0.11, G:0.20, T:0.57
Consensus pattern (23 bp):
TTTTCGTTTCATCATTTGGGTAT
Found at i:14644649 original size:21 final size:21
Alignment explanation
Indices: 14644584--14644656 Score: 83
Period size: 21 Copynumber: 3.4 Consensus size: 21
14644574 AAAAAGAGAG
*
14644584 GGGAGAAACCAGCAAAAACGA
1 GGGAGAAACCAGCAAGAACGA
* * *
14644605 GAGACAAACCAGCAAGAACAA
1 GGGAGAAACCAGCAAGAACGA
* *
14644626 GGGAGAAACCAACAAGAATGA
1 GGGAGAAACCAGCAAGAACGA
14644647 GGGGAGAAAC
1 -GGGAGAAAC
14644657 TGTTGTTTTG
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
21 33 0.79
22 9 0.21
ACGTcount: A:0.52, C:0.18, G:0.29, T:0.01
Consensus pattern (21 bp):
GGGAGAAACCAGCAAGAACGA
Found at i:14647536 original size:153 final size:152
Alignment explanation
Indices: 14647259--14647580 Score: 490
Period size: 153 Copynumber: 2.1 Consensus size: 152
14647249 TGTTTTGGCT
* *
14647259 CTTTGTTCGTATTTTTTTTCCAAATTTTATTACTTTTAAAAAATATACTATTTTTTAATTTTTTT
1 CTTTGTTCGTATTTTTTTTCCAAATTTTATTACTTTAAAAAAATATACTATTTTTTAATTTTTAT
*
14647324 TATTTTACATTATTTTAGTACATTATATTTGAAATTTATTAATTTAATGTGTTTTTTAAATAAA-
66 TATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAATGTGTTTTTTAAATAAAT
14647388 TTAAAAAAATCATTATTTCGGCC
131 TTAAAAAAATC-TTATTTCGGCC
* * *
14647411 CTTTGTTTGTA-TTTTTTTCTCAGATTTTATTACTTTCAATAAAAATATATTATTTTTGT-A-TT
1 CTTTGTTCGTATTTTTTTTC-CAAATTTTATTACTTT-AA-AAAAATATACTATTTTT-TAATTT
* *
14647473 TTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTAAAT
62 TTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAATGTGTTTTTTAAAT
*
14647538 AAATTTAAAAAACTCTTATTTCGGCC
127 AAATTTAAAAAAATCTTATTTCGGCC
14647564 CTTTGTTCGTATTTTTT
1 CTTTGTTCGTATTTTTT
14647581 AGGGTTTTTT
Statistics
Matches: 154, Mismatches: 10, Indels: 10
0.89 0.06 0.06
Matches are distributed among these distances:
151 8 0.05
152 25 0.16
153 88 0.57
154 32 0.21
155 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.07, T:0.55
Consensus pattern (152 bp):
CTTTGTTCGTATTTTTTTTCCAAATTTTATTACTTTAAAAAAATATACTATTTTTTAATTTTTAT
TATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAATGTGTTTTTTAAATAAAT
TTAAAAAAATCTTATTTCGGCC
Found at i:14650295 original size:46 final size:46
Alignment explanation
Indices: 14650238--14650331 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
14650228 AAGAAATAAG
14650238 TATATCACTTAGTCATAAGTGATATAGAATTGATCTAATAAATTCT
1 TATATCACTTAGTCATAAGTGATATAGAATTGATCTAATAAATTCT
* *
14650284 TATATCGCTTAGTCATAAGTGTTATAGAATTGATCTAATAAATTCT
1 TATATCACTTAGTCATAAGTGATATAGAATTGATCTAATAAATTCT
14650330 TA
1 TA
14650332 CTTTCAACAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.40
Consensus pattern (46 bp):
TATATCACTTAGTCATAAGTGATATAGAATTGATCTAATAAATTCT
Found at i:14656042 original size:25 final size:27
Alignment explanation
Indices: 14655987--14656053 Score: 86
Period size: 25 Copynumber: 2.6 Consensus size: 27
14655977 CATTATCGGG
*
14655987 CTGCTAACACTAGCTTTGGATCAGGGT
1 CTGCTAACACTAGCTTTGGATCAGAGT
* *
14656014 -TGCTAACACTAG-TTTGGTTC-GATT
1 CTGCTAACACTAGCTTTGGATCAGAGT
14656038 CTGCTAACACTAGCTT
1 CTGCTAACACTAGCTT
14656054 CAAAGAATCT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
24 2 0.06
25 19 0.54
26 14 0.40
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.34
Consensus pattern (27 bp):
CTGCTAACACTAGCTTTGGATCAGAGT
Found at i:14656698 original size:3 final size:3
Alignment explanation
Indices: 14656687--14656745 Score: 109
Period size: 3 Copynumber: 19.3 Consensus size: 3
14656677 CCTTTTTTTC
14656687 CTT CTTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT C-TT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
14656733 CTT CTT CTT CTT C
1 CTT CTT CTT CTT C
14656746 ACTCAACCTA
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 52 0.95
4 3 0.05
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:14660371 original size:18 final size:18
Alignment explanation
Indices: 14660344--14660381 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
14660334 TAAAAATTAA
14660344 AAAATATAAAT-TAAATAT
1 AAAATATAAATGT-AATAT
*
14660362 AAAATTTAAATGTAATAT
1 AAAATATAAATGTAATAT
14660380 AA
1 AA
14660382 GGACAGAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
AAAATATAAATGTAATAT
Found at i:14661547 original size:18 final size:19
Alignment explanation
Indices: 14661534--14661571 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
14661524 TTTATTTTTA
14661534 ATCAAATATATA-TTATAT
1 ATCAAATATATATTTATAT
*
14661552 ATTAAATATATATTTA-AT
1 ATCAAATATATATTTATAT
14661570 AT
1 AT
14661572 GGGTTGGGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
ATCAAATATATATTTATAT
Found at i:14661554 original size:25 final size:26
Alignment explanation
Indices: 14661503--14661554 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
14661493 CTGGCCTGAA
* * *
14661503 TTTTATATTAAATATATATTTTTTAT
1 TTTTATATCAAATATATATTATATAT
14661529 TTTTA-ATCAAATATATATTATATAT
1 TTTTATATCAAATATATATTATATAT
14661554 T
1 T
14661555 AAATATATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (26 bp):
TTTTATATCAAATATATATTATATAT
Found at i:14662825 original size:29 final size:29
Alignment explanation
Indices: 14662790--14662866 Score: 109
Period size: 29 Copynumber: 2.7 Consensus size: 29
14662780 CACGATAACG
* *
14662790 TAAGTGACTAAAACGTAACATTTTAAATA
1 TAAGTGACTAAAACGTAACATTTCAAACA
*
14662819 TAAGTGACTAAAACATAACATTTCAAACA
1 TAAGTGACTAAAACGTAACATTTCAAACA
* *
14662848 TAAGTGTCTAAAATGTAAC
1 TAAGTGACTAAAACGTAAC
14662867 CCGAGAAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (29 bp):
TAAGTGACTAAAACGTAACATTTCAAACA
Found at i:14663965 original size:26 final size:27
Alignment explanation
Indices: 14663914--14663972 Score: 66
Period size: 26 Copynumber: 2.1 Consensus size: 27
14663904 TAGATACATG
* *
14663914 ATTTTCTTTTAAAATTTTTAATTTTTA
1 ATTTTCTTATAAAATTTTAAATTTTTA
*
14663941 ATTTT-TTATAAAATTTAAATATTTTTTA
1 ATTTTCTTATAAAATTTTAA-A-TTTTTA
14663969 ATTT
1 ATTT
14663973 CTTTATCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 11 0.41
27 6 0.22
28 10 0.37
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (27 bp):
ATTTTCTTATAAAATTTTAAATTTTTA
Found at i:14673698 original size:29 final size:29
Alignment explanation
Indices: 14673666--14673722 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
14673656 AGATTTTTAA
*
14673666 AAAACTTAAATTTAAAACTAAAATTAAAG
1 AAAACTTAAATTCAAAACTAAAATTAAAG
* *
14673695 AAAACTTAAATTCAGAACTAAATTTAAA
1 AAAACTTAAATTCAAAACTAAAATTAAA
14673723 ACTTAGCAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.60, C:0.09, G:0.04, T:0.28
Consensus pattern (29 bp):
AAAACTTAAATTCAAAACTAAAATTAAAG
Found at i:14676132 original size:59 final size:59
Alignment explanation
Indices: 14676045--14676235 Score: 364
Period size: 59 Copynumber: 3.2 Consensus size: 59
14676035 CTTTTATTTT
*
14676045 TTTTCTTTATTTCTCTTTTTACTCAAACGTTAGTTTCTTTTCCAAAGTTCATATTTTGG
1 TTTTCTTTATTTCTCTTTTTACTAAAACGTTAGTTTCTTTTCCAAAGTTCATATTTTGG
14676104 TTTTCTTTATTTCTCTTTTTACTAAAACGTTAGTTTCTTTTCCAAAGTTCATATTTTGG
1 TTTTCTTTATTTCTCTTTTTACTAAAACGTTAGTTTCTTTTCCAAAGTTCATATTTTGG
14676163 TTTTCTTTATTTCTCTTTTTACTAAAACGTTAGTTTCTTTTCCAAAGTTCATATTTTGG
1 TTTTCTTTATTTCTCTTTTTACTAAAACGTTAGTTTCTTTTCCAAAGTTCATATTTTGG
*
14676222 TTTTCTTTTTTTCT
1 TTTTCTTTATTTCT
14676236 TCATTTTTGG
Statistics
Matches: 130, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 130 1.00
ACGTcount: A:0.18, C:0.16, G:0.08, T:0.58
Consensus pattern (59 bp):
TTTTCTTTATTTCTCTTTTTACTAAAACGTTAGTTTCTTTTCCAAAGTTCATATTTTGG
Found at i:14676338 original size:7 final size:7
Alignment explanation
Indices: 14676326--14676364 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
14676316 GTTAGTATAG
14676326 TTTTTAA
1 TTTTTAA
14676333 TTTTTAA
1 TTTTTAA
14676340 TTTTTAA
1 TTTTTAA
14676347 TTTTTAA
1 TTTTTAA
14676354 TTTTTAA
1 TTTTTAA
14676361 TTTT
1 TTTT
14676365 ATTTCTTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTTTAA
Found at i:14677248 original size:79 final size:79
Alignment explanation
Indices: 14677117--14677423 Score: 605
Period size: 79 Copynumber: 3.9 Consensus size: 79
14677107 AAAAGGGGCT
*
14677117 TTGTTAAATATCTGCCCTTATAAATTTGGGAGTGTTCAAAGCAATTGGACTGTAGAAGAAATGCC
1 TTGTTAAATATCTGCCATTATAAATTTGGGAGTGTTCAAAGCAATTGGACTGTAGAAGAAATGCC
14677182 TGTAGCTCTAAACC
66 TGTAGCTCTAAACC
14677196 TTGTTAAATATCTGCCATTATAAATTTGGGAGTGTTCAAAGCAATTGGACTGTAGAAGAAATGCC
1 TTGTTAAATATCTGCCATTATAAATTTGGGAGTGTTCAAAGCAATTGGACTGTAGAAGAAATGCC
14677261 TGTAGCTCTAAACC
66 TGTAGCTCTAAACC
14677275 TTGTTAAATATCTGCCATTATAAATTTGGGAGTGTTCAAAGCAATTGGACTGTAGAAGAAATGCC
1 TTGTTAAATATCTGCCATTATAAATTTGGGAGTGTTCAAAGCAATTGGACTGTAGAAGAAATGCC
14677340 TGTAGCTCTAAACC
66 TGTAGCTCTAAACC
14677354 TTGTTAAATATCTGCCATTATAAATTTGGGAGTGTTCAAAGCAATTGGACTGTAGAAGAAATGCC
1 TTGTTAAATATCTGCCATTATAAATTTGGGAGTGTTCAAAGCAATTGGACTGTAGAAGAAATGCC
14677419 TGTAG
66 TGTAG
14677424 ATTTTAGAGC
Statistics
Matches: 227, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 227 1.00
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.32
Consensus pattern (79 bp):
TTGTTAAATATCTGCCATTATAAATTTGGGAGTGTTCAAAGCAATTGGACTGTAGAAGAAATGCC
TGTAGCTCTAAACC
Found at i:14678396 original size:14 final size:15
Alignment explanation
Indices: 14678369--14678411 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
14678359 ATTCAGAATA
14678369 AAAATAATAAAAATC
1 AAAATAATAAAAATC
14678384 AAAATAA-AAAAATC
1 AAAATAATAAAAATC
*
14678398 AAAAAAATCAAAAA
1 AAAATAAT-AAAAA
14678412 AGAAGAGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 13 0.52
15 7 0.28
16 5 0.20
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (15 bp):
AAAATAATAAAAATC
Found at i:14678401 original size:9 final size:9
Alignment explanation
Indices: 14678384--14678412 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
14678374 AATAAAAATC
14678384 AAAAT-AAA
1 AAAATCAAA
14678392 AAAATCAAA
1 AAAATCAAA
14678401 AAAATCAAA
1 AAAATCAAA
14678410 AAA
1 AAA
14678413 GAAGAGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.25
9 15 0.75
ACGTcount: A:0.83, C:0.07, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAATCAAA
Found at i:14680895 original size:132 final size:132
Alignment explanation
Indices: 14680658--14681846 Score: 1350
Period size: 132 Copynumber: 9.0 Consensus size: 132
14680648 GGAGCAGGTT
* * * * * *
14680658 GATGGCGGATTTTACCTCCCTGAGGCTATAGTAGAGCACATTGAAGCCAGTAATTCTATCTCCCT
1 GATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCTT
* *
14680723 GGGCAGCAGTGGAATAGATTGAAGATTA-AGGATCTTATCTCCCTAAGCGGTAGTGGAGTAGAT-
66 GGTCAGCAGTGGAATAGATTGAAGATTACA-GATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC
14680786 GAAA
130 G-AA
* * *
14680790 GATGGCAGATTTTACCTCCCTGAGGTTATAGTGGAATACATTGAAACCAGTAATTCTATCTCCTT
1 GATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCTT
* * * * *
14680855 GGTC-GATAATGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATC
66 GGTCAG-CAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC
14680919 GAA
130 GAA
* * * *
14680922 GATGGCGGATTTTACCTCCCT-ATGATTACAGTGGAGTACATTGAAGCCAGTAGTTTTATCTTCC
1 GATGGCAGATTTTACCTCCCTGA-GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCC
* * * *
14680986 -TGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCTCTAAGCAATAATGGAGTAGAT
64 TTGGTCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGAT
14681050 CGAA
129 CGAA
** * *
14681054 GATGGTGGAGTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCTAGTAATTCTATCTCCCT
1 GATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCT-CCT
* *
14681119 AGG-CAGCAGTGGAATAGATTAAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC
65 TGGTCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC
14681183 GAA
130 GAA
* * *
14681186 GATGGCAGATTTTACCTCTCTGTGATTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCTCT
1 GATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTC-CT
* * * * *
14681251 AGG-CAGCAGTGGAATAGATTGAAGATTACATATTTTATCTCCCTAAGAAGTAGTGAAGTAGATC
65 TGGTCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC
14681315 GAA
130 GAA
*
14681318 GATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTTCTT
1 GATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCTT
** * * * *
14681383 GGTTGGTAGTGGAATAGATTAAAGA-TAGCAAATC-TAGTCTTCCTAAGCAGTAGTGGAGTAGAT
66 GGTCAGCAGTGGAATAGATTGAAGATTA-CAGATCTTA-TCTCCCTAAGCAGTAGTGGAGTAGAT
*
14681446 TGAA
129 CGAA
* * *
14681450 GATGACAAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCT
1 GATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCTT
** * * * * *
14681515 GGTTGGCAGTGGAATAGATTGAAGATTATAGATCTTATCTCCCTAAGTAGTAGTGGAGCAAATTG
66 GGTCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCG
14681580 AA
131 AA
* * * * * *
14681582 GATGACGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAATTCTATCTCCCT
1 GATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCTT
* * *** *
14681647 GGTCAGCAGTGGAATAGGTTAGAA-ATTACATATCTTATCTCCCTAAGCAGTAACAGAGCAGATC
66 GGTCAGCAGTGGAATAGATT-GAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC
*
14681711 AAA
130 GAA
* * * * * * * * *
14681714 GATGGC-GAATCTCATCTTTCCC--AGG--AGTAG-GGAAGCAGATTTAAGCCA-CAAGTCTTAT
1 GATGGCAG-ATTTTA-C-CTCCCTGAGGTTA-CAGTGG-AGTACATTGAAGCCAGTAATTC-TAT
* * * * * *
14681772 CTCCCTGGTCGGCAGTGGAATAGGTTGAAAATTACAGATCTCATCTCCCTAAGCAGTAGTGGAGC
60 CTCCTTGGTCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGT
*
14681837 AAATCGAA
125 AGATCGAA
14681845 GA
1 GA
14681847 CGGCGAATCT
Statistics
Matches: 919, Mismatches: 115, Indels: 47
0.85 0.11 0.04
Matches are distributed among these distances:
130 10 0.01
131 94 0.10
132 794 0.86
133 17 0.02
134 4 0.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (132 bp):
GATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCTT
GGTCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCG
AA
Found at i:14681188 original size:44 final size:44
Alignment explanation
Indices: 14680714--14681338 Score: 210
Period size: 44 Copynumber: 14.2 Consensus size: 44
14680704 CCAGTAATTC
** * * *
14680714 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTA-AGGATCT
1 TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGATTACA-GATTT
* **
14680758 TATCTCCCTAAGCGGTAGTGGAGTAGA-TGAAAGATGGCAGATTT
1 TATCTCCCTAAGCAGTAGTGGAGTAGATTG-AAGATTACAGATTT
* * * * * * *
14680802 TACCTCCCTGAGGTTA-TAGTGGAATACATTGAA-A--CCAGTAATTC
1 TATCTCCCT-AAG-CAGTAGTGGAGTAGATTGAAGATTACAG--ATTT
** * * * *
14680846 TATCT-CCTTGGTC-GATAATGGAATAGATTGAAGATTTCAGATCT
1 TATCTCCCTAAG-CAG-TAGTGGAGTAGATTGAAGATTACAGATTT
* * * ** *
14680890 TATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGGATTT
1 TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGATTACAGATTT
* * * * *
14680934 TACCTCCCTATG-ATTACAGTGGAGTACATTGAAG---CCAGTAGTTT
1 TATCTCCCTAAGCAGT--AGTGGAGTAGATTGAAGATTACAG-A-TTT
* ** * * *
14680978 TATCTTCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGATTACAGATTT
* * * * **** *
14681022 TATCTCTCTAAGCAATAATGGAGTAGATCGAAGATGGTGGAGTT
1 TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGATTACAGATTT
* * * * * *
14681066 TACCTCCCTGAG--GTTACAGTGGAGTACATTGAAG-CTAGTA-ATTC
1 TATCTCCCTAAGCAG-T--AGTGGAGTAGATTGAAGATTA-CAGATTT
* * * * *
14681110 TATCTCCCTAGGCAGCAGTGGAATAGATTAAAGATTACAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGATTACAGATTT
* **
14681154 TATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCAGATTT
1 TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGATTACAGATTT
* * ** * * * *
14681198 TACCTCTCTGTG-ATTACAGTGGAGTACATTGAAG---CCAGTAATTC
1 TATCTCCCTAAGCAGT--AGTGGAGTAGATTGAAGATTACAG--ATTT
* * * * *
14681242 TATCTCTCTAGGCAGCAGTGGAATAGATTGAAGATTACATATTT
1 TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGATTACAGATTT
* * * **
14681286 TATCTCCCTAAGAAGTAGTGAAGTAGATCGAAGATGGCAGATTT
1 TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGATTACAGATTT
*
14681330 TACCTCCCT
1 TATCTCCCT
14681339 GAGGTTACAG
Statistics
Matches: 413, Mismatches: 130, Indels: 76
0.67 0.21 0.12
Matches are distributed among these distances:
42 11 0.03
43 71 0.17
44 253 0.61
45 67 0.16
46 11 0.03
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (44 bp):
TATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGATTACAGATTT
Found at i:14681795 original size:131 final size:131
Alignment explanation
Indices: 14681637--14681933 Score: 418
Period size: 131 Copynumber: 2.3 Consensus size: 131
14681627 GCCAATAATT
* *
14681637 CTATCTCCCTGGTCAGCAGTGGAATAGGTT-AGAAATTACATATCTTATCTCCCTAAGCAGTAAC
1 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGA-AAATTACAGATCTCATCTCCCTAAGCAGTAAC
* * *
14681701 AGAGCAGATCAAAGATGGCGAATCTCATCTTTCCCAGGAGTAGGGAAGCAGATTTAAGCCACAAG
65 AGAGCAAATCAAAGACGGCGAATCTCATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCACAAG
14681766 TC
130 TC
* * ***
14681768 TTATCTCCCTGGTCGGCAGTGGAATAGGTTGAAAATTACAGATCTCATCTCCCTAAGCAGTAGTG
1 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTACAGATCTCATCTCCCTAAGCAGTAACA
* * *
14681833 GAGCAAATCGAAGACGGCGAATCTTATCTTCCCCTGGAGTAGGGAAGCAGATTTAAGCCACAAGT
66 GAGCAAATCAAAGACGGCGAATCTCATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCACAAGT
14681898 C
131 C
* * *
14681899 CTATCTCCCTGATCAGTAGT-GAGTAGGTTGGAAAA
1 CTATCTCCCTGGTCAGCAGTGGAATAGGTT-GAAAA
14681934 ACGACAGATA
Statistics
Matches: 146, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
130 8 0.05
131 137 0.94
132 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (131 bp):
CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTACAGATCTCATCTCCCTAAGCAGTAACA
GAGCAAATCAAAGACGGCGAATCTCATCTTCCCCAGGAGTAGGGAAGCAGATTTAAGCCACAAGT
C
Found at i:14683685 original size:22 final size:20
Alignment explanation
Indices: 14683657--14683709 Score: 63
Period size: 22 Copynumber: 2.6 Consensus size: 20
14683647 TGATTTATTG
*
14683657 TTATTATTTTTATTGGTCATT
1 TTATTATTTTTATTAGTC-TT
*
14683678 ATTATTATTATTATTAGTCTT
1 -TTATTATTTTTATTAGTCTT
14683699 TTATT-TTTTTA
1 TTATTATTTTTA
14683710 ATCTTATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 5 0.18
20 5 0.18
21 2 0.07
22 16 0.57
ACGTcount: A:0.23, C:0.04, G:0.06, T:0.68
Consensus pattern (20 bp):
TTATTATTTTTATTAGTCTT
Found at i:14683717 original size:31 final size:31
Alignment explanation
Indices: 14683676--14683741 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
14683666 TTATTGGTCA
* *
14683676 TTATTATTATTATTAT-TAG-T-CTTTTATT
1 TTATTAATCTTATTATATAGATCCTTTTATT
*
14683704 TTTTTAATCTTATTATATAGATCCTTTTATT
1 TTATTAATCTTATTATATAGATCCTTTTATT
14683735 TTATTAA
1 TTATTAA
14683742 AAGATATTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 13 0.42
29 3 0.10
30 1 0.03
31 14 0.45
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.64
Consensus pattern (31 bp):
TTATTAATCTTATTATATAGATCCTTTTATT
Found at i:14687333 original size:25 final size:25
Alignment explanation
Indices: 14687282--14687334 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
14687272 CCTTAGCGCA
* * *
14687282 CTCTCTCATTTTTAGCACATTACTG
1 CTCTCTAATTATTAGCACATCACTG
* *
14687307 CTCTCTAATTATTAGCACGTCAGTG
1 CTCTCTAATTATTAGCACATCACTG
14687332 CTC
1 CTC
14687335 ATCGATTAGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.21, C:0.28, G:0.11, T:0.40
Consensus pattern (25 bp):
CTCTCTAATTATTAGCACATCACTG
Found at i:14696607 original size:29 final size:29
Alignment explanation
Indices: 14696562--14696617 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
14696552 AAAAAGCCCT
*
14696562 TTTTTTCAATATGTACCGAAATGGGCCGG
1 TTTTTTCAATATGTACCGAAATAGGCCGG
* *
14696591 TTTTTT-AATTATTTACCGGAATAGGCC
1 TTTTTTCAA-TATGTACCGAAATAGGCC
14696618 ATTTTCCGCG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 2 0.09
29 21 0.91
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (29 bp):
TTTTTTCAATATGTACCGAAATAGGCCGG
Found at i:14696935 original size:11 final size:12
Alignment explanation
Indices: 14696910--14696934 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14696900 CGAAAAATAT
14696910 CCTTTTTTGCCC
1 CCTTTTTTGCCC
14696922 CCTTTTTTGCCC
1 CCTTTTTTGCCC
14696934 C
1 C
14696935 TAAATTTCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.44, G:0.08, T:0.48
Consensus pattern (12 bp):
CCTTTTTTGCCC
Found at i:14697623 original size:29 final size:30
Alignment explanation
Indices: 14697568--14697625 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
14697558 CGCTGAAAAT
14697568 GGCCCATTCCGGTAAATAATTAAAAAAACC
1 GGCCCATTCCGGTAAATAATTAAAAAAACC
*
14697598 GGCCCATTTCGGTAAAT-ATTGAAAAAAA
1 GGCCCATTCCGGTAAATAATT-AAAAAAA
14697626 GGGTTTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 3 0.12
30 23 0.88
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.22
Consensus pattern (30 bp):
GGCCCATTCCGGTAAATAATTAAAAAAACC
Found at i:14699987 original size:22 final size:22
Alignment explanation
Indices: 14699957--14699999 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
14699947 ACACTAAAAC
*
14699957 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
14699979 AGGCCTTTAGCGGCGCTTTTT
1 AGGCCTTTAGCGGCGCTTTTT
14700000 AGCGCCGCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.21, G:0.28, T:0.42
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:14700132 original size:43 final size:43
Alignment explanation
Indices: 14700071--14700291 Score: 284
Period size: 43 Copynumber: 5.2 Consensus size: 43
14700061 GTGTCGCTAA
* * *
14700071 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGGAC
1 CTTTAGCGGCACTTTTCCCACAAACGCCGCTATAGATCAGGAC
* * *
14700114 CTTTAACGGCGCTTTTCCCACAAACGCCGCTATAGATCAGAAC
1 CTTTAGCGGCACTTTTCCCACAAACGCCGCTATAGATCAGGAC
* *
14700157 CTTTAGCGACACTTTTCCCACAAACGCCGCTATAGATCAGGAT
1 CTTTAGCGGCACTTTTCCCACAAACGCCGCTATAGATCAGGAC
* *
14700200 CTTTAGCGGCACTTTT-ACACAAACGCCGCTATAGATCAAGAC
1 CTTTAGCGGCACTTTTCCCACAAACGCCGCTATAGATCAGGAC
* ** * *
14700242 CTTTAGCGACACTTTT-TTATAAACGCCGCTATAGATCATGAC
1 CTTTAGCGGCACTTTTCCCACAAACGCCGCTATAGATCAGGAC
*
14700284 TTTTAGCG
1 CTTTAGCG
14700292 ACGTCTTTTT
Statistics
Matches: 159, Mismatches: 19, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
42 67 0.42
43 92 0.58
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (43 bp):
CTTTAGCGGCACTTTTCCCACAAACGCCGCTATAGATCAGGAC
Found at i:14700254 original size:85 final size:84
Alignment explanation
Indices: 14700071--14700315 Score: 287
Period size: 85 Copynumber: 2.9 Consensus size: 84
14700061 GTGTCGCTAA
* * * * * * *
14700071 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGGACCTTTAACGGCGCTTTTCCCACA
1 CTTTAGCGACACTTTTCCCACAAACGCCGCTATAGATCAGGA-CTTTAGCGGCACTTTT-ACACA
14700136 AACGCCGCTATAGATCAGAAC
64 AACGCCGCTATAGATCAGAAC
14700157 CTTTAGCGACACTTTTCCCACAAACGCCGCTATAGATCAGGATCTTTAGCGGCACTTTTACACAA
1 CTTTAGCGACACTTTTCCCACAAACGCCGCTATAGATCAGGA-CTTTAGCGGCACTTTTACACAA
14700222 ACGCCGCTATAGATCA-AGAC
65 ACGCCGCTATAGATCAGA-AC
** * * * * * *
14700242 CTTTAGCGACACTTTT-TTATAAACGCCGCTATAGATCATGACTTTTAGCGACGTCTTTTTCGCA
1 CTTTAGCGACACTTTTCCCACAAACGCCGCTATAGATCAGGAC-TTTAGCGGC-ACTTTTACACA
14700306 AACGCCGCTA
64 AACGCCGCTA
14700316 AAAGTACCAT
Statistics
Matches: 140, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
83 1 0.01
84 30 0.21
85 57 0.41
86 52 0.37
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (84 bp):
CTTTAGCGACACTTTTCCCACAAACGCCGCTATAGATCAGGACTTTAGCGGCACTTTTACACAAA
CGCCGCTATAGATCAGAAC
Found at i:14704898 original size:21 final size:21
Alignment explanation
Indices: 14704874--14704914 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
14704864 AACCCTAAAT
14704874 CCCTAACTCTTAACCCCTAAC
1 CCCTAACTCTTAACCCCTAAC
*
14704895 CCCTAACTCTTAATCCCTAA
1 CCCTAACTCTTAACCCCTAA
14704915 ACCTTAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.44, G:0.00, T:0.27
Consensus pattern (21 bp):
CCCTAACTCTTAACCCCTAAC
Found at i:14705151 original size:23 final size:24
Alignment explanation
Indices: 14705112--14705165 Score: 76
Period size: 22 Copynumber: 2.3 Consensus size: 24
14705102 TATATGAAAT
*
14705112 TATTTAATATATAAATTAAAAAAA
1 TATTTAATAAATAAATTAAAAAAA
14705136 TATTTAA-AAATAAATT-AAAAAA
1 TATTTAATAAATAAATTAAAAAAA
*
14705158 TAATTAAT
1 TATTTAAT
14705166 CTAAACCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 12 0.44
23 8 0.30
24 7 0.26
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (24 bp):
TATTTAATAAATAAATTAAAAAAA
Found at i:14705230 original size:22 final size:22
Alignment explanation
Indices: 14705195--14705257 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
14705185 TTGACCCATG
* *
14705195 AACTCATAAACCCTAAATCCCT
1 AACTCATAACCCCTAAACCCCT
*
14705217 AACTCTTAACCCCTAAACCCCT
1 AACTCATAACCCCTAAACCCCT
14705239 AAC-CACTAACCCCTAAACC
1 AACTCA-TAACCCCTAAACC
14705258 TTAAATCTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
21 1 0.03
22 35 0.97
ACGTcount: A:0.38, C:0.43, G:0.00, T:0.19
Consensus pattern (22 bp):
AACTCATAACCCCTAAACCCCT
Found at i:14705306 original size:15 final size:15
Alignment explanation
Indices: 14705270--14705310 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
14705260 AAATCTCAAC
14705270 CCTTAAA-CCATAAT
1 CCTTAAATCCATAAT
*
14705284 CCCT-AATCCATAAT
1 CCTTAAATCCATAAT
14705298 CCTTAAATCCATA
1 CCTTAAATCCATA
14705311 CTCCATAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 2 0.09
14 13 0.57
15 8 0.35
ACGTcount: A:0.39, C:0.32, G:0.00, T:0.29
Consensus pattern (15 bp):
CCTTAAATCCATAAT
Found at i:14705319 original size:15 final size:15
Alignment explanation
Indices: 14705273--14705319 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
14705263 TCTCAACCCT
*
14705273 TAAA-CCATAATCCC
1 TAAATCCATAATCCA
*
14705287 T-AATCCATAATCCT
1 TAAATCCATAATCCA
*
14705301 TAAATCCATACTCCA
1 TAAATCCATAATCCA
14705316 TAAA
1 TAAA
14705320 CCTTAAAACA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 2 0.07
14 11 0.39
15 15 0.54
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAATCCATAATCCA
Found at i:14705603 original size:41 final size:40
Alignment explanation
Indices: 14705543--14705658 Score: 162
Period size: 41 Copynumber: 2.8 Consensus size: 40
14705533 TAAAATGTTT
14705543 TTAGCGGCGCTTTATCAAAAACGCCGCTAAAGCCCCTA-CCA
1 TTAGCGGCGCTTT-TCAAAAACGCCGCTAAAGCCCC-AGCCA
* *
14705584 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCAGGCA
1 TTAGCGGCGCTTTT-CAAAAACGCCGCTAAAGCCCCAGCCA
*
14705625 TTAGCGGCGCTTTTTGAAAAACGCCGCTAAAGCC
1 TTAGCGGCGC-TTTTCAAAAACGCCGCTAAAGCC
14705659 ACGAAATGTT
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
40 2 0.03
41 62 0.91
42 4 0.06
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (40 bp):
TTAGCGGCGCTTTTCAAAAACGCCGCTAAAGCCCCAGCCA
Found at i:14705738 original size:39 final size:39
Alignment explanation
Indices: 14705694--14705772 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
14705684 TGGGCTAAGG
* * *
14705694 TTTTTTGCGGCGTTTTTTTGAAAAACGCCGCTAATGCTCA
1 TTTTTAGCGGCATTTTTTT-AAAAACGCCACTAATGCTCA
14705734 TTTTTAGCGGCATTTTTTTAAAAACGCCACTAATGCTCA
1 TTTTTAGCGGCATTTTTTTAAAAACGCCACTAATGCTCA
14705773 ATCTTTAGTG
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 19 0.53
40 17 0.47
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.39
Consensus pattern (39 bp):
TTTTTAGCGGCATTTTTTTAAAAACGCCACTAATGCTCA
Found at i:14705744 original size:40 final size:40
Alignment explanation
Indices: 14705694--14705847 Score: 141
Period size: 40 Copynumber: 3.9 Consensus size: 40
14705684 TGGGCTAAGG
*
14705694 TTTTTTGCGGCGTTTTTTTGAAAAACGCCGCTAATGCTCA
1 TTTTTAGCGGCGTTTTTTTGAAAAACGCCGCTAATGCTCA
* *
14705734 TTTTTAGCGGCATTTTTTT-AAAAACGCCACTAATGCTCAA
1 TTTTTAGCGGCGTTTTTTTGAAAAACGCCGCTAATGCTC-A
* * * *** * *
14705774 TCTTTAGTGGCGATTTCCAG-AAATCGCCGCTAATGCTTGA
1 TTTTTAGCGGCGTTTTTTTGAAAAACGCCGCTAATGC-TCA
* ***
14705814 TTTTTACCGGCGTTTTTTTTCCAAACGCCGCTAA
1 TTTTTAGCGGCGTTTTTTTGAAAAACGCCGCTAA
14705848 AAGTGCCGCT
Statistics
Matches: 87, Mismatches: 23, Indels: 7
0.74 0.20 0.06
Matches are distributed among these distances:
39 18 0.21
40 57 0.66
41 12 0.14
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.38
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTTTTGAAAAACGCCGCTAATGCTCA
Found at i:14706890 original size:35 final size:35
Alignment explanation
Indices: 14706851--14706921 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
14706841 ATTTCAATCC
14706851 ACATCCCATGTATATTATGTTAGAAAAAATATAAA
1 ACATCCCATGTATATTATGTTAGAAAAAATATAAA
14706886 ACATCCCATGTATATTATGTTAGAAAAAATATAAA
1 ACATCCCATGTATATTATGTTAGAAAAAATATAAA
14706921 A
1 A
14706922 TCACATATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.31
Consensus pattern (35 bp):
ACATCCCATGTATATTATGTTAGAAAAAATATAAA
Found at i:14708073 original size:15 final size:15
Alignment explanation
Indices: 14708055--14708085 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14708045 TTTTTTTTTT
14708055 AATTTTATTCTCTTC
1 AATTTTATTCTCTTC
*
14708070 AATTTTATTCTTTTC
1 AATTTTATTCTCTTC
14708085 A
1 A
14708086 TTATAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (15 bp):
AATTTTATTCTCTTC
Found at i:14708236 original size:17 final size:17
Alignment explanation
Indices: 14708198--14708229 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14708188 TAAATAGTTA
14708198 ATTATTATTTTGTTTAG
1 ATTATTATTTTGTTTAG
14708215 ATTATTATTTT-TTTA
1 ATTATTATTTTGTTTA
14708230 TGTTTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (17 bp):
ATTATTATTTTGTTTAG
Found at i:14715402 original size:17 final size:17
Alignment explanation
Indices: 14715380--14715412 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
14715370 TCCCAAATTT
14715380 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
14715397 TGATACCCATATCTTT
1 TGATACCCATATCTTT
14715413 GACATTCCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.27, G:0.06, T:0.42
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:14729247 original size:13 final size:13
Alignment explanation
Indices: 14729203--14729266 Score: 56
Period size: 13 Copynumber: 4.8 Consensus size: 13
14729193 ACATGTTTAA
*
14729203 AAATTTTGGTTTT
1 AAATTTTGATTTT
* * *
14729216 AAGTTTAGTTTTAT
1 AAATTTTGATTT-T
14729230 AAATTTTGATTTT
1 AAATTTTGATTTT
* *
14729243 AAATTTTAATTGTA
1 AAATTTTGATT-TT
14729257 AAATTTTGAT
1 AAATTTTGAT
14729267 GGTTTCTTGT
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
13 20 0.50
14 20 0.50
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (13 bp):
AAATTTTGATTTT
Found at i:14729260 original size:27 final size:26
Alignment explanation
Indices: 14729202--14729266 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 26
14729192 TACATGTTTA
* * *
14729202 AAAATTTTGGTTTTAAGTTTAGTTTT
1 AAAATTTTGATTTTAAGTTTAATTGT
*
14729228 ATAAATTTTGATTTTAAATTTTAATTGT
1 A-AAATTTTGATTTT-AAGTTTAATTGT
14729256 AAAATTTTGAT
1 AAAATTTTGAT
14729267 GGTTTCTTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.03
27 22 0.67
28 10 0.30
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (26 bp):
AAAATTTTGATTTTAAGTTTAATTGT
Found at i:14731020 original size:30 final size:30
Alignment explanation
Indices: 14730981--14731037 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
14730971 TTTTATAAAT
14730981 AATTAATATTT-AT-TACTTAAAAATATTTAA
1 AATTAATATTTCATATA-TT-AAAATATTTAA
*
14731011 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
14731038 AACATGTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.75
31 4 0.17
32 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:14731231 original size:13 final size:13
Alignment explanation
Indices: 14731210--14731301 Score: 130
Period size: 13 Copynumber: 7.1 Consensus size: 13
14731200 ATTAAACTAA
*
14731210 ACTTTTTAAAAGT
1 ACTTTTTAAAAGC
*
14731223 ACTTCTTAAAAGC
1 ACTTTTTAAAAGC
** *
14731236 ACTTTTGCACAGC
1 ACTTTTTAAAAGC
14731249 ACTTTTTAAAAGC
1 ACTTTTTAAAAGC
14731262 ACTTTTTAAAAGC
1 ACTTTTTAAAAGC
14731275 ACTTTTTAAAAGC
1 ACTTTTTAAAAGC
*
14731288 ACTTTTCAAAAGC
1 ACTTTTTAAAAGC
14731301 A
1 A
14731302 TTGCTAAACT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 69 1.00
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.36
Consensus pattern (13 bp):
ACTTTTTAAAAGC
Found at i:14735025 original size:16 final size:16
Alignment explanation
Indices: 14734973--14735028 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
14734963 CATTTGATTC
14734973 ACTGTAATGGAATAGA
1 ACTGTAATGGAATAGA
* * *
14734989 GCTCTAATTGAATAGA
1 ACTGTAATGGAATAGA
*
14735005 GCTGTAATGGAATAGA
1 ACTGTAATGGAATAGA
14735021 ACTGTAAT
1 ACTGTAAT
14735029 CAGTAATTCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (16 bp):
ACTGTAATGGAATAGA
Found at i:14735097 original size:44 final size:46
Alignment explanation
Indices: 14735010--14735102 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 46
14735000 ATAGAGCTGT
* *
14735010 AATGGAATAGAACTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
1 AATGAAATAGAACTGTAATCAGTAATTCAATTGTTTGGTTGAATAG
* **
14735056 AATGAAATAGAACTGTAAT-AG-CATTCTTTTGTTTGGTTGAATAG
1 AATGAAATAGAACTGTAATCAGTAATTCAATTGTTTGGTTGAATAG
14735100 AAT
1 AAT
14735103 AGATGTTATA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 22 0.52
45 2 0.05
46 18 0.43
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.37
Consensus pattern (46 bp):
AATGAAATAGAACTGTAATCAGTAATTCAATTGTTTGGTTGAATAG
Found at i:14736781 original size:30 final size:31
Alignment explanation
Indices: 14736742--14736801 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
14736732 AGAGGTGAGA
*
14736742 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
14736773 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
14736802 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:14737029 original size:9 final size:9
Alignment explanation
Indices: 14737015--14737051 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
14737005 TATAGTTTGA
14737015 TATTCGAAT
1 TATTCGAAT
14737024 TATTCGAAT
1 TATTCGAAT
*
14737033 TATTCGAGT
1 TATTCGAAT
14737042 TATTCGAAT
1 TATTCGAAT
14737051 T
1 T
14737052 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:14737123 original size:9 final size:9
Alignment explanation
Indices: 14737106--14737136 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
14737096 TCGAATTGAT
14737106 TCGAATAAC
1 TCGAATAAC
*
14737115 TCGATTAAC
1 TCGAATAAC
14737124 TCGAATAAC
1 TCGAATAAC
14737133 TCGA
1 TCGA
14737137 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:14742655 original size:23 final size:23
Alignment explanation
Indices: 14742618--14742666 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
14742608 CTTTCATATA
* *
14742618 ATATTTTTATTTTTTAAAAATTT
1 ATATTTATATATTTTAAAAATTT
* *
14742641 ATATTTATATATTTTAGAATTTT
1 ATATTTATATATTTTAAAAATTT
14742664 ATA
1 ATA
14742667 AAAAAAATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (23 bp):
ATATTTATATATTTTAAAAATTT
Found at i:14743167 original size:29 final size:28
Alignment explanation
Indices: 14743134--14743189 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
14743124 AGGAATAAAT
*
14743134 ATATTA-AAAATTCAGAAAAAAATGTATAC
1 ATATTATAAAAAT-AGAAAAAAAT-TATAC
*
14743163 ATATTATAAAAATAGAAAGAAATTATA
1 ATATTATAAAAATAGAAAAAAATTATA
14743190 AAAATTATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 4 0.17
29 15 0.62
30 5 0.21
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.29
Consensus pattern (28 bp):
ATATTATAAAAATAGAAAAAAATTATAC
Found at i:14746869 original size:24 final size:25
Alignment explanation
Indices: 14746836--14746897 Score: 63
Period size: 24 Copynumber: 2.4 Consensus size: 25
14746826 CATGTGCTTG
* **
14746836 TTTTATTTTTAATTTTTTATGATA-T
1 TTTTA-TTTTAATTTCTTAAAATATT
*
14746861 TTTTATTTTTATTTCTTAAAATATT
1 TTTTATTTTAATTTCTTAAAATATT
14746886 TTTTAATTTTAA
1 TTTT-ATTTTAA
14746898 ATTATTTGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 14 0.47
25 10 0.33
26 6 0.20
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (25 bp):
TTTTATTTTAATTTCTTAAAATATT
Found at i:14746869 original size:25 final size:26
Alignment explanation
Indices: 14746836--14746897 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 26
14746826 CATGTGCTTG
* **
14746836 TTTTATTTTTAATTTTTTATGATA-T
1 TTTTATTTTTAATTTCTTAAAATATT
14746861 TTTTATTTTT-ATTTCTTAAAATATT
1 TTTTATTTTTAATTTCTTAAAATATT
*
14746886 TTTTAATTTTAA
1 TTTTATTTTTAA
14746898 ATTATTTGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
24 10 0.32
25 20 0.65
26 1 0.03
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (26 bp):
TTTTATTTTTAATTTCTTAAAATATT
Found at i:14746897 original size:18 final size:19
Alignment explanation
Indices: 14746866--14746904 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
14746856 GATATTTTTA
*
14746866 TTTTTATTTCTTAAAATAT
1 TTTTTAATTCTTAAAATAT
*
14746885 TTTTTAATT-TTAAATTAT
1 TTTTTAATTCTTAAAATAT
14746903 TT
1 TT
14746905 GTTGACATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTTAATTCTTAAAATAT
Found at i:14748805 original size:49 final size:49
Alignment explanation
Indices: 14748740--14748838 Score: 171
Period size: 49 Copynumber: 2.0 Consensus size: 49
14748730 CCATTAATGC
* * *
14748740 TAGGGATTTGGTGTGAATATTGCATATTCAAATTCGAATATTTTAATCA
1 TAGGGATTTGATGTGAAAACTGCATATTCAAATTCGAATATTTTAATCA
14748789 TAGGGATTTGATGTGAAAACTGCATATTCAAATTCGAATATTTTAATCA
1 TAGGGATTTGATGTGAAAACTGCATATTCAAATTCGAATATTTTAATCA
14748838 T
1 T
14748839 TATAAGTAGC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.39
Consensus pattern (49 bp):
TAGGGATTTGATGTGAAAACTGCATATTCAAATTCGAATATTTTAATCA
Found at i:14751366 original size:13 final size:12
Alignment explanation
Indices: 14751333--14751365 Score: 57
Period size: 13 Copynumber: 2.7 Consensus size: 12
14751323 TTTTTTTCAC
14751333 AGCATTTTGAAA
1 AGCATTTTGAAA
14751345 AGCACTTTTGAAA
1 AGCA-TTTTGAAA
14751358 AGCATTTT
1 AGCATTTT
14751366 TCAACCGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (12 bp):
AGCATTTTGAAA
Found at i:14757457 original size:58 final size:57
Alignment explanation
Indices: 14757377--14757493 Score: 207
Period size: 58 Copynumber: 2.0 Consensus size: 57
14757367 ATTTTTATTA
* *
14757377 AATATTTACAGAGCTACACTAGAAGTGAATTAAATTTTTGGTTATGTAATTTTGACG
1 AATATTTACAGAGCTACACTAGAAGTGAATTAAATTTTTGGTTAAGTAATTATGACG
14757434 ANATATTTACAGAGCTACACTAGAAGTGAATTAAATTTTTGGTTAAGTAATTATGACG
1 A-ATATTTACAGAGCTACACTAGAAGTGAATTAAATTTTTGGTTAAGTAATTATGACG
14757492 AA
1 AA
14757494 AGAGTGTTTA
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
57 2 0.04
58 55 0.96
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (57 bp):
AATATTTACAGAGCTACACTAGAAGTGAATTAAATTTTTGGTTAAGTAATTATGACG
Found at i:14757720 original size:3 final size:3
Alignment explanation
Indices: 14757712--14757746 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
14757702 AAAGGATATA
14757712 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
14757747 GAGGGGAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:14763927 original size:21 final size:20
Alignment explanation
Indices: 14763895--14763936 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
14763885 CTCTGGAAAA
*
14763895 AATAAAACCCAACAAATTATC
1 AATAAAACCCAA-AAAGTATC
14763916 AATATAAA-CCAAAAAGTATC
1 AATA-AAACCCAAAAAGTATC
14763936 A
1 A
14763937 GTATTATTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 8 0.42
21 8 0.42
22 3 0.16
ACGTcount: A:0.60, C:0.19, G:0.02, T:0.19
Consensus pattern (20 bp):
AATAAAACCCAAAAAGTATC
Found at i:14765783 original size:24 final size:25
Alignment explanation
Indices: 14765739--14765786 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 25
14765729 GATGTTATCC
14765739 GAAAAGGATATCAAATGAAAAGGTT
1 GAAAAGGATATCAAATGAAAAGGTT
14765764 GAAAAGGATAT-AAATGAAAAGGT
1 GAAAAGGATATCAAATGAAAAGGT
14765787 CTATAACTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.54, C:0.02, G:0.25, T:0.19
Consensus pattern (25 bp):
GAAAAGGATATCAAATGAAAAGGTT
Found at i:14779765 original size:16 final size:18
Alignment explanation
Indices: 14779739--14779771 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
14779729 TTAATTTATA
14779739 TAAATTAA-TTTCTCAAT
1 TAAATTAATTTTCTCAAT
14779756 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
14779772 CCCAATTCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:14782214 original size:22 final size:21
Alignment explanation
Indices: 14782178--14782218 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
14782168 CAAGCAACAA
14782178 AACAAAAACACACAACAATAAG
1 AACAAAAACACACAA-AATAAG
14782200 AACATAAAACA-ACAAAATA
1 AACA-AAAACACACAAAATA
14782219 GTGCTTGACC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 8 0.44
23 6 0.33
ACGTcount: A:0.71, C:0.20, G:0.02, T:0.07
Consensus pattern (21 bp):
AACAAAAACACACAAAATAAG
Found at i:14794331 original size:28 final size:28
Alignment explanation
Indices: 14794295--14794359 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
14794285 CAATAATTAA
* *
14794295 AGTTCCAGGTACTATGTACCGGTGTTTC
1 AGTTCCAGGTACTACGTACCAGTGTTTC
*
14794323 AGTTTCAGGTACTACGTACCAGTGTTTC
1 AGTTCCAGGTACTACGTACCAGTGTTTC
14794351 AGTTCCAGG
1 AGTTCCAGG
14794360 CACACTGTGC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.34
Consensus pattern (28 bp):
AGTTCCAGGTACTACGTACCAGTGTTTC
Found at i:14816321 original size:24 final size:24
Alignment explanation
Indices: 14816293--14816375 Score: 78
Period size: 24 Copynumber: 3.5 Consensus size: 24
14816283 ATGCTAGTAG
*
14816293 TAGAAAATTATGCGAACTATGCAT
1 TAGAAAATTATGCGAACTATGCAA
* * * *
14816317 TAGAAAATTATACTAGCTTTGCAA
1 TAGAAAATTATGCGAACTATGCAA
* * * *
14816341 CA-AAAATTATGCGAACTGTACAG
1 TAGAAAATTATGCGAACTATGCAA
14816364 TAGAAAATTATG
1 TAGAAAATTATG
14816376 GTGGTTGTGC
Statistics
Matches: 45, Mismatches: 13, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
23 16 0.36
24 29 0.64
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (24 bp):
TAGAAAATTATGCGAACTATGCAA
Found at i:14816350 original size:47 final size:47
Alignment explanation
Indices: 14816296--14816422 Score: 132
Period size: 47 Copynumber: 2.7 Consensus size: 47
14816286 CTAGTAGTAG
*
14816296 AAAATTATGCGAACTATGCATTAGAAAATTATACTAGCTT-TGCAAC-A
1 AAAATTATGCGAACTAT-CAATAGAAAATTATACT-GCTTGTGCAACAA
* * ** *
14816343 AAAATTATGCGAACTGTACAGTAGAAAATTATGGTGGTTGTGCAACAA
1 AAAATTATGCGAACTAT-CAATAGAAAATTATACTGCTTGTGCAACAA
* *
14816391 AAAATTATGTGAACTCATCAATAGAGAATTAT
1 AAAATTATGCGAACT-ATCAATAGAAAATTAT
14816423 GTGAACTGGT
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
46 3 0.04
47 36 0.54
48 27 0.40
49 1 0.01
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.29
Consensus pattern (47 bp):
AAAATTATGCGAACTATCAATAGAAAATTATACTGCTTGTGCAACAA
Found at i:14816828 original size:54 final size:54
Alignment explanation
Indices: 14816770--14816914 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
14816760 GTTGCGATTG
* **
14816770 TAAATCGGCAAACCGTAAGATTTTAAAAATCTCATAAGTAGAAGGTTGTGATCA
1 TAAATCGACAAACCGCGAGATTTTAAAAATCTCATAAGTAGAAGGTTGTGATCA
* *
14816824 TAAATCGACAAACCGCGAGATTCTAAAAATCTCATAAGTAGGAGGTTGTGATCA
1 TAAATCGACAAACCGCGAGATTTTAAAAATCTCATAAGTAGAAGGTTGTGATCA
* *
14816878 AAAATCGACAAACCGCGAGATTTTGAAAATCTCATAA
1 TAAATCGACAAACCGCGAGATTTTAAAAATCTCATAA
14816915 AAGGTCACGA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 83 1.00
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (54 bp):
TAAATCGACAAACCGCGAGATTTTAAAAATCTCATAAGTAGAAGGTTGTGATCA
Found at i:14835303 original size:231 final size:232
Alignment explanation
Indices: 14835000--14835461 Score: 845
Period size: 231 Copynumber: 2.0 Consensus size: 232
14834990 GTTTTAGTAA
* ** *
14835000 TATACTAAACAATGTTGATAATTTAAATTCAGTGCTTATATATTTAGTATTTAGTTTTCAGCATT
1 TATACTAAACAATGTTGATAATTCAAATTCAGTAATTATATATTTAGTAGTTAGTTTTCAGCATT
14835065 TAATTTTTAAGATTATAAAACAACACATAAGTTAAAGATAGTCATGGTAATCCAAAATAAAATAA
66 TAATTTTTAAGATTATAAAACAACACATAAGTTAAAGATAGTCATGGTAATCCAAAATAAAATAA
14835130 AGAAAATAG-CCCCAAAAGCATAAACCCCTTTTAACAAAAATATGGTATATGGTGAAGTGTCATG
131 AGAAAATAGCCCCCAAAAGCATAAACCCCTTTTAACAAAAATATGGTATATGGTGAAGTGTCATG
*
14835194 TTGTGTATTTTCGATGCAATCACATTGGCTCAACCCT
196 CTGTGTATTTTCGATGCAATCACATTGGCTCAACCCT
* *
14835231 TATACTAAACAATGTTGATAATTCAAATTCAGTAATTATCTCTTTAGTAGTTAGTTTTCAGCATT
1 TATACTAAACAATGTTGATAATTCAAATTCAGTAATTATATATTTAGTAGTTAGTTTTCAGCATT
14835296 TAATTTTTAAGATTATAAAACAACACATAAGTTAAAGATAGTCATGGTAATCCAAAATAAAATAA
66 TAATTTTTAAGATTATAAAACAACACATAAGTTAAAGATAGTCATGGTAATCCAAAATAAAATAA
14835361 AGAAAATAGCCCCCAAAAGCATAAACCCCTTTTAACAAAAATATGGTATATGGTGAAGTGTCATG
131 AGAAAATAGCCCCCAAAAGCATAAACCCCTTTTAACAAAAATATGGTATATGGTGAAGTGTCATG
*
14835426 CTGTGTATTTTCGATGCTATCACATTGGCTCAACCC
196 CTGTGTATTTTCGATGCAATCACATTGGCTCAACCC
14835462 CTACCCCCTG
Statistics
Matches: 222, Mismatches: 8, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
231 133 0.60
232 89 0.40
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (232 bp):
TATACTAAACAATGTTGATAATTCAAATTCAGTAATTATATATTTAGTAGTTAGTTTTCAGCATT
TAATTTTTAAGATTATAAAACAACACATAAGTTAAAGATAGTCATGGTAATCCAAAATAAAATAA
AGAAAATAGCCCCCAAAAGCATAAACCCCTTTTAACAAAAATATGGTATATGGTGAAGTGTCATG
CTGTGTATTTTCGATGCAATCACATTGGCTCAACCCT
Found at i:14838772 original size:21 final size:21
Alignment explanation
Indices: 14838748--14838791 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
14838738 CGCAGGCTGA
14838748 AATTAGAAGTTATAGGGAAAG
1 AATTAGAAGTTATAGGGAAAG
*
14838769 AATTAGTAGTTATAGGGAAAG
1 AATTAGAAGTTATAGGGAAAG
14838790 AA
1 AA
14838792 AACTTGGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.48, C:0.00, G:0.27, T:0.25
Consensus pattern (21 bp):
AATTAGAAGTTATAGGGAAAG
Found at i:14865926 original size:5 final size:5
Alignment explanation
Indices: 14865916--14865953 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
14865906 CTTTGATTAC
14865916 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAA
1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAA
14865954 AATAATATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:14866461 original size:23 final size:24
Alignment explanation
Indices: 14866407--14866463 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
14866397 ATAGAAATGT
14866407 ATAAAATAAAATAATAATACCTAA
1 ATAAAATAAAATAATAATACCTAA
* *
14866431 A-AACATAAAATAAT-AT-CTTATA
1 ATAAAATAAAATAATAATACCTA-A
14866453 ATAAAATAAAA
1 ATAAAATAAAA
14866464 GGATCTATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 3 0.11
22 4 0.14
23 20 0.71
24 1 0.04
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (24 bp):
ATAAAATAAAATAATAATACCTAA
Found at i:14866521 original size:3 final size:3
Alignment explanation
Indices: 14866513--14866555 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
14866503 ATAAAAGGAC
* * *
14866513 TAA TAA TAA TAA TAA TAA TGAC TAA TAA AAA TAA TAA CAA TAA
1 TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
14866556 ACCAATTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
3 31 0.94
4 2 0.06
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:14866535 original size:22 final size:21
Alignment explanation
Indices: 14866450--14866549 Score: 78
Period size: 22 Copynumber: 4.6 Consensus size: 21
14866440 ATAATATCTT
14866450 ATAATAA-AATAAAAGGATCTA
1 ATAATAATAATAAAAGGA-CTA
* * * **
14866471 TATAATAAGATTAAGAGGAAAA
1 -ATAATAATAATAAAAGGACTA
14866493 ATAA-AATAAAATAAAAGGACTA
1 ATAATAAT--AATAAAAGGACTA
*
14866515 ATAATAATAATAATAATGACTA
1 ATAATAATAATAA-AAGGACTA
*
14866537 ATAAAAATAATAA
1 ATAATAATAATAA
14866550 CAATAAACCA
Statistics
Matches: 62, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
20 2 0.03
21 9 0.15
22 40 0.65
23 11 0.18
ACGTcount: A:0.64, C:0.03, G:0.09, T:0.24
Consensus pattern (21 bp):
ATAATAATAATAAAAGGACTA
Found at i:14868159 original size:128 final size:128
Alignment explanation
Indices: 14867926--14868197 Score: 436
Period size: 128 Copynumber: 2.1 Consensus size: 128
14867916 CGCAACGTGT
* * *
14867926 GGGAGATAGGATTTGTGGCCTAAATCTGCTTCCCTACTCTTGAAGCTAAGATTCGCCGTCTCCGA
1 GGGAGATAGGACTTGTGGCCTAAATCTGCTTCCCTACTCTTGAAGATAAGATTCGCCATCTCCGA
* * * * *
14867991 TCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGTGATTTCTAACCTATTCCACTGTTGACCA
66 TCTGCTCCGCTACTGCTTAGGGAGACAAAATCTGTAATTTCCAACCTATTCCACTGCTGACCA
* * * *
14868054 GGGAGATAAGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATTCGCCATCTTCGA
1 GGGAGATAGGACTTGTGGCCTAAATCTGCTTCCCTACTCTTGAAGATAAGATTCGCCATCTCCGA
14868119 TCTGCTCCGCTACTGCTTAGGGAGACAAAATCTGTAATTTCCAACCTATTCCACTGCTGACCA
66 TCTGCTCCGCTACTGCTTAGGGAGACAAAATCTGTAATTTCCAACCTATTCCACTGCTGACCA
14868182 GGGAGATAGGACTTGT
1 GGGAGATAGGACTTGT
14868198 ATCTTCGATC
Statistics
Matches: 131, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
128 131 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31
Consensus pattern (128 bp):
GGGAGATAGGACTTGTGGCCTAAATCTGCTTCCCTACTCTTGAAGATAAGATTCGCCATCTCCGA
TCTGCTCCGCTACTGCTTAGGGAGACAAAATCTGTAATTTCCAACCTATTCCACTGCTGACCA
Found at i:14868253 original size:88 final size:88
Alignment explanation
Indices: 14868193--14869170 Score: 1293
Period size: 88 Copynumber: 11.1 Consensus size: 88
14868183 GGAGATAGGA
* * * * *
14868193 CTTGTATCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTGTTATCTTTAACCTGCTC
1 CTTGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTC
14868258 CACTACAACCGAGGGAGGCAAGG
66 CACTACAACCGAGGGAGGCAAGG
* *
14868281 CTT-TGTTTTTGATCTGCTTCGCTGTC-GATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCT
1 CTTGTGTCTTCGATCTGCTTCGCTGTCAG-TGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCT
14868344 CCACTACAACCGAGGGAGGCAAGG
65 CCACTACAACCGAGGGAGGCAAGG
* * * * * *
14868368 CTTGTGTTTTCAATTTGCTTCACTGTCAATGCAGGAAGGCAATATCTGCTATCTTCAACCTGCTC
1 CTTGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTC
* *
14868433 CACGACAACCGAGAGA-GCAAGG
66 CACTACAACCGAGGGAGGCAAGG
* * * * *
14868455 CTTGTGTCTTCGATCTGCTTCGCCGTTAGTACAGGAAGGTAAGATCTACTATCTTCAACCTGCTC
1 CTTGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTC
*
14868520 CACTACAACCGAGGGTGGCAAGG
66 CACTACAACCGAGGGAGGCAAGG
* * *
14868543 CTTGTGTCTTCGATCTGCTTCG-TCGTCAGTACAAGATGGCAAGATCTGCTATCTTCAACCTGCT
1 CTTGTGTCTTCGATCTGCTTCGCT-GTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCT
*
14868607 CCACTACAACTGAGGGAGGCAAGG
65 CCACTACAACCGAGGGAGGCAAGG
* * * * * * *
14868631 CTTGTGTCTTCGATCTACTTCACCGTTAGTACAGGAAGGCAAGATCTGTTATCTTTAACCTGCTC
1 CTTGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTC
*
14868696 CACTGCAACCGAGGGAGGCAAGG
66 CACTACAACCGAGGGAGGCAAGG
* * * * * *
14868719 CTTGTATCTTCGATCTGCTTTGCTGTCAGCGCAGGAAGGCAAGATCTACTATATTCAACCTTCTC
1 CTTGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTC
* *
14868784 CACTGCAATCGAGGGAGGCAAGG
66 CACTACAACCGAGGGAGGCAAGG
* * *
14868807 CTTGTGTCTTCGATCTGCTTCG-TCGTCAGTACAAGATGGCAAGATCTGCTATCTTCAACCTGCT
1 CTTGTGTCTTCGATCTGCTTCGCT-GTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCT
14868871 CCACTACAACCGAGGGAGGCAAGG
65 CCACTACAACCGAGGGAGGCAAGG
* * *
14868895 CTTGTGTCTTCGATTTGCTTCGCTGTC-GATGTAGGAAGGCAAGATCTGCTATCTTCAACCTACT
1 CTTGTGTCTTCGATCTGCTTCGCTGTCAG-TGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCT
* **
14868959 CCACTACAACAGAGGGAGGCAAAA
65 CCACTACAACCGAGGGAGGCAAGG
* * *
14868983 CTTGTGTGTTCGATCTGCTTCGCTCTCAGTGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTC
1 CTTGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTC
* * *
14869048 CATTGCAACCGAGGGAGGTAAGG
66 CACTACAACCGAGGGAGGCAAGG
* * * * *
14869071 CTGGTATCTTCGATCTGCTTAGCTTTCAGCGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTC
1 CTTGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTC
* *
14869136 CACTGCAACTGAGGGAGGCAAGG
66 CACTACAACCGAGGGAGGCAAGG
* *
14869159 CTGGTATCTTCG
1 CTTGTGTCTTCG
14869171 GTCTTCACTG
Statistics
Matches: 777, Mismatches: 103, Indels: 20
0.86 0.11 0.02
Matches are distributed among these distances:
87 154 0.20
88 621 0.80
89 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.27
Consensus pattern (88 bp):
CTTGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTC
CACTACAACCGAGGGAGGCAAGG
Found at i:14869080 original size:43 final size:43
Alignment explanation
Indices: 14869032--14869169 Score: 118
Period size: 43 Copynumber: 3.2 Consensus size: 43
14869022 CAAGATCTGC
* *
14869032 TATCTTTAACCTGCTCCATTGCAACCGAGGGAGGTAAGGCTGG
1 TATCTTCAACCTGCTCCATTGCAACCGAGGGAGGCAAGGCTGG
* * * * * * * *
14869075 TATCTTCGATCTGCT-TAGCTTTC-AGCGCAGGAAGGCAAGATCTGC
1 TATCTTCAACCTGCTCCA--TTGCAACCG-AGGGAGGCAAG-GCTGG
* *
14869120 TATCTTCAACCTGCTCCACTGCAACTGAGGGAGGCAAGGCTGG
1 TATCTTCAACCTGCTCCATTGCAACCGAGGGAGGCAAGGCTGG
14869163 TATCTTC
1 TATCTTC
14869170 GGTCTTCACT
Statistics
Matches: 69, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
42 1 0.01
43 25 0.36
44 24 0.35
45 18 0.26
46 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.27
Consensus pattern (43 bp):
TATCTTCAACCTGCTCCATTGCAACCGAGGGAGGCAAGGCTGG
Found at i:14869126 original size:45 final size:44
Alignment explanation
Indices: 14868991--14869126 Score: 107
Period size: 44 Copynumber: 3.1 Consensus size: 44
14868981 AACTTGTGTG
* *
14868991 TTCGATCTGCTTCGCTCTCAGTGCAGGAAGGCAAGATCTGCTATC
1 TTCGATCTGCTT-GCTTTCAGCGCAGGAAGGCAAGATCTGCTATC
** * * * * * * * *
14869036 TTTAACCTGC-TCCATTGCAAC-CGAGGGAGGTAAG-GCTGGTATC
1 TTCGATCTGCTTGC-TTTCAGCGC-AGGAAGGCAAGATCTGCTATC
14869079 TTCGATCTGCTTAGCTTTCAGCGCAGGAAGGCAAGATCTGCTATC
1 TTCGATCTGCTT-GCTTTCAGCGCAGGAAGGCAAGATCTGCTATC
14869124 TTC
1 TTC
14869127 AACCTGCTCC
Statistics
Matches: 63, Mismatches: 22, Indels: 12
0.65 0.23 0.12
Matches are distributed among these distances:
43 16 0.25
44 28 0.44
45 19 0.30
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (44 bp):
TTCGATCTGCTTGCTTTCAGCGCAGGAAGGCAAGATCTGCTATC
Found at i:14870324 original size:21 final size:21
Alignment explanation
Indices: 14870300--14870370 Score: 58
Period size: 21 Copynumber: 3.4 Consensus size: 21
14870290 TTCAAGTTGC
14870300 TCTGATCATTTCATGCCCCAT
1 TCTGATCATTTCATGCCCCAT
* ***
14870321 TCTGATCAAGATTCGA-GTTGC-T
1 TCTGATC-A-TTTC-ATGCCCCAT
14870343 -CTGATCATTTCATGCCCCAT
1 TCTGATCATTTCATGCCCCAT
14870363 TCTGATCA
1 TCTGATCA
14870371 ATATTTGAGC
Statistics
Matches: 36, Mismatches: 8, Indels: 12
0.64 0.14 0.21
Matches are distributed among these distances:
18 1 0.03
19 5 0.14
20 2 0.06
21 20 0.56
22 2 0.06
23 5 0.14
24 1 0.03
ACGTcount: A:0.21, C:0.28, G:0.14, T:0.37
Consensus pattern (21 bp):
TCTGATCATTTCATGCCCCAT
Found at i:14870333 original size:42 final size:42
Alignment explanation
Indices: 14870268--14870371 Score: 172
Period size: 42 Copynumber: 2.5 Consensus size: 42
14870258 AAGATTACCA
* *
14870268 CATGCCCCAATCTTTATCAAGATTCAAGTTGCTCTGATCATTT
1 CATGCCCCATTC-TGATCAAGATTCAAGTTGCTCTGATCATTT
*
14870311 CATGCCCCATTCTGATCAAGATTCGAGTTGCTCTGATCATTT
1 CATGCCCCATTCTGATCAAGATTCAAGTTGCTCTGATCATTT
14870353 CATGCCCCATTCTGATCAA
1 CATGCCCCATTCTGATCAA
14870372 TATTTGAGCC
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
42 47 0.81
43 11 0.19
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.35
Consensus pattern (42 bp):
CATGCCCCATTCTGATCAAGATTCAAGTTGCTCTGATCATTT
Found at i:14870481 original size:14 final size:14
Alignment explanation
Indices: 14870464--14870503 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
14870454 CCATTTTTAC
14870464 TTTTTCCTTTTTCA
1 TTTTTCCTTTTTCA
*
14870478 -TTTTCCATTTTCA
1 TTTTTCCTTTTTCA
14870491 TTTTTCCTCTTTT
1 TTTTTCCT-TTTT
14870504 TTTTTTCTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 12 0.55
14 6 0.27
15 4 0.18
ACGTcount: A:0.07, C:0.23, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTTCCTTTTTCA
Found at i:14871430 original size:6 final size:6
Alignment explanation
Indices: 14871406--14871431 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
14871396 TTAACTTTAA
14871406 TTTTTC TTTTTC TTTTTC TTTTTC TT
1 TTTTTC TTTTTC TTTTTC TTTTTC TT
14871432 CTTTTTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:14879591 original size:21 final size:21
Alignment explanation
Indices: 14879565--14879606 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
14879555 CATTTACCAG
*
14879565 AAATTAAACCTGCTTAAAACA
1 AAATTAAACCAGCTTAAAACA
*
14879586 AAATTAAACCAGCTTGAAACA
1 AAATTAAACCAGCTTAAAACA
14879607 TGCCAAAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.21
Consensus pattern (21 bp):
AAATTAAACCAGCTTAAAACA
Found at i:14880499 original size:49 final size:49
Alignment explanation
Indices: 14880444--14880563 Score: 195
Period size: 49 Copynumber: 2.4 Consensus size: 49
14880434 CCAACCAAGC
* * *
14880444 ACACACCTAGGCACTAAGTGCTTACCCCGTAGGCTAACATACCTCTAAA
1 ACACACCTGGGCACCAAGTGCCTACCCCGTAGGCTAACATACCTCTAAA
* *
14880493 ACACACCTGGGCACCAAGTGCCTACCCCGTAGGCTAACATCCCTCTGAA
1 ACACACCTGGGCACCAAGTGCCTACCCCGTAGGCTAACATACCTCTAAA
14880542 ACACACCTGGGCACCAAGTGCC
1 ACACACCTGGGCACCAAGTGCC
14880564 ATTCCTGAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 66 1.00
ACGTcount: A:0.29, C:0.37, G:0.17, T:0.17
Consensus pattern (49 bp):
ACACACCTGGGCACCAAGTGCCTACCCCGTAGGCTAACATACCTCTAAA
Found at i:14883485 original size:23 final size:23
Alignment explanation
Indices: 14883455--14883508 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
14883445 CCGAATTTGA
14883455 AGTTAATCATGAACATATATGCG
1 AGTTAATCATGAACATATATGCG
14883478 AGTTAATCATGAACATATATGCG
1 AGTTAATCATGAACATATATGCG
14883501 AGTTAATC
1 AGTTAATC
14883509 TTCTGTCTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (23 bp):
AGTTAATCATGAACATATATGCG
Found at i:14885419 original size:16 final size:16
Alignment explanation
Indices: 14885398--14885430 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14885388 GTTATATAAA
14885398 AAAATGATATTGCAAT
1 AAAATGATATTGCAAT
14885414 AAAATGATATTGCAAT
1 AAAATGATATTGCAAT
14885430 A
1 A
14885431 GACTTGAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.30
Consensus pattern (16 bp):
AAAATGATATTGCAAT
Found at i:14886391 original size:20 final size:22
Alignment explanation
Indices: 14886357--14886397 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
14886347 TACGTTCTTA
14886357 AAATTTTGATTATTC-CATTAG
1 AAATTTTGATTATTCGCATTAG
14886378 AAATTTTG-TTATTCGCATTA
1 AAATTTTGATTATTCGCATTA
14886398 CAAACCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.32, C:0.10, G:0.10, T:0.49
Consensus pattern (22 bp):
AAATTTTGATTATTCGCATTAG
Found at i:14891939 original size:16 final size:16
Alignment explanation
Indices: 14891918--14891948 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
14891908 TAACACTAGG
14891918 TCACAACCTTTCACTA
1 TCACAACCTTTCACTA
14891934 TCACAACCTTTCACT
1 TCACAACCTTTCACT
14891949 GGCAAAACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.39, G:0.00, T:0.32
Consensus pattern (16 bp):
TCACAACCTTTCACTA
Found at i:14896507 original size:28 final size:29
Alignment explanation
Indices: 14896474--14896534 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 29
14896464 AAAATAAAAA
* *
14896474 TATATAAAGAAAAATATTAATATTATATTT
1 TATA-AAATAAAATTATTAATATTATATTT
14896504 TATAAAATAAAATTTTATTAATATTATATTT
1 TATAAAATAAAA--TTATTAATATTATATTT
14896535 ATTTATTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 7 0.26
30 4 0.15
31 16 0.59
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (29 bp):
TATAAAATAAAATTATTAATATTATATTT
Found at i:14903728 original size:101 final size:101
Alignment explanation
Indices: 14903553--14903795 Score: 477
Period size: 101 Copynumber: 2.4 Consensus size: 101
14903543 ATATACAATG
*
14903553 GATAAATTATGTAACATTGACACTTTATTTGCTTATAGAAACTTGAGCCCTTCATGTGAAGAAAA
1 GATAAACTATGTAACATTGACACTTTATTTGCTTATAGAAACTTGAGCCCTTCATGTGAAGAAAA
14903618 GCATGTGTAACACCTCTTAATCTGATGACTGACATT
66 GCATGTGTAACACCTCTTAATCTGATGACTGACATT
14903654 GATAAACTATGTAACATTGACACTTTATTTGCTTATAGAAACTTGAGCCCTTCATGTGAAGAAAA
1 GATAAACTATGTAACATTGACACTTTATTTGCTTATAGAAACTTGAGCCCTTCATGTGAAGAAAA
14903719 GCATGTGTAACACCTCTTAATCTGATGACTGACATT
66 GCATGTGTAACACCTCTTAATCTGATGACTGACATT
14903755 GATAAACTATGTAACATTGACACTTTATTTGCTTATAGAAA
1 GATAAACTATGTAACATTGACACTTTATTTGCTTATAGAAA
14903796 ATTTCTTTTT
Statistics
Matches: 141, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 141 1.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (101 bp):
GATAAACTATGTAACATTGACACTTTATTTGCTTATAGAAACTTGAGCCCTTCATGTGAAGAAAA
GCATGTGTAACACCTCTTAATCTGATGACTGACATT
Found at i:14908031 original size:78 final size:78
Alignment explanation
Indices: 14907899--14908047 Score: 199
Period size: 78 Copynumber: 1.9 Consensus size: 78
14907889 GAGATTTACT
* * * *
14907899 CGATGGTTGAGATCCAACATAAATTGCAGATTCTCGACAACTTGAGTGAACAACATCGAATTATT
1 CGATGGTTGAGATCCAACACAAATTGCAGATTCTCAACAACTTGAGTGAACAACATCAAATCATT
14907964 AGTTAGTGATCTG
66 AGTTAGTGATCTG
* * ** * *
14907977 CGATGGTTGAGATCTAACACAAGTTGTGGATTCTCAACAGCTTGAGTGAGCAACATCAAATCATT
1 CGATGGTTGAGATCCAACACAAATTGCAGATTCTCAACAACTTGAGTGAACAACATCAAATCATT
*
14908042 ATTTAG
66 AGTTAG
14908048 CGATGTTTGA
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
78 60 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.30
Consensus pattern (78 bp):
CGATGGTTGAGATCCAACACAAATTGCAGATTCTCAACAACTTGAGTGAACAACATCAAATCATT
AGTTAGTGATCTG
Found at i:14908096 original size:71 final size:71
Alignment explanation
Indices: 14908006--14908179 Score: 197
Period size: 71 Copynumber: 2.5 Consensus size: 71
14907996 CAAGTTGTGG
* ** *
14908006 ATTCTCAACAGCTTGAGTGAGCAACATCAAATCATTA-TTTAGCGATGTTTGAGATCCAACATGT
1 ATTCTCAATAGCTTGAGTGAGCAACATCAAATCA-TACTTTAGCGATGGCTGAGATCCAACACGT
14908070 GTTGCAA
65 GTTGCAA
* * * * * * **
14908077 ATTCTCAATAGCTTAAGTGAGCAGCATCATATTATACTTTATCGATGGCTGAGATGCAGTACGTG
1 ATTCTCAATAGCTTGAGTGAGCAACATCAAATCATACTTTAGCGATGGCTGAGATCCAACACGTG
*
14908142 TTGCGA
66 TTGCAA
**
14908148 ATTCTTGATAGCTTGAGTGAGCAACATCAAAT
1 ATTCTCAATAGCTTGAGTGAGCAACATCAAAT
14908180 AAAGTTTGTT
Statistics
Matches: 84, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
70 2 0.02
71 82 0.98
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (71 bp):
ATTCTCAATAGCTTGAGTGAGCAACATCAAATCATACTTTAGCGATGGCTGAGATCCAACACGTG
TTGCAA
Found at i:14909746 original size:13 final size:13
Alignment explanation
Indices: 14909728--14909786 Score: 68
Period size: 13 Copynumber: 4.5 Consensus size: 13
14909718 ACTCGAATAG
14909728 CTGTAGTAGCATC
1 CTGTAGTAGCATC
14909741 CTGTAGTAGCATC
1 CTGTAGTAGCATC
*
14909754 CTGTAGCT--CAATAA
1 CTGTAG-TAGC-AT-C
14909768 CTGTAGTAGCATC
1 CTGTAGTAGCATC
14909781 CTGTAG
1 CTGTAG
14909787 CTTAGGTCTG
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
12 1 0.03
13 28 0.72
14 9 0.23
15 1 0.03
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (13 bp):
CTGTAGTAGCATC
Found at i:14910307 original size:30 final size:30
Alignment explanation
Indices: 14910228--14910312 Score: 134
Period size: 30 Copynumber: 2.8 Consensus size: 30
14910218 TCAGATTTAG
* *
14910228 TGGGAGTTAGTGGGGATATAGGTGGTTTAA
1 TGGGAGTTAGTGGGGATATGGGTGGTGTAA
*
14910258 TGGGAGTTAGTGGTGATATGGGTGGTGTAA
1 TGGGAGTTAGTGGGGATATGGGTGGTGTAA
*
14910288 TGGGAGTTAGTGGGGATATGAGTGG
1 TGGGAGTTAGTGGGGATATGGGTGG
14910313 CTTTAAAAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.21, C:0.00, G:0.47, T:0.32
Consensus pattern (30 bp):
TGGGAGTTAGTGGGGATATGGGTGGTGTAA
Found at i:14917494 original size:14 final size:14
Alignment explanation
Indices: 14917475--14917502 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14917465 TGGTTCTGTG
14917475 CTTCTTTCAATAGT
1 CTTCTTTCAATAGT
14917489 CTTCTTTCAATAGT
1 CTTCTTTCAATAGT
14917503 TTGAAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.07, T:0.50
Consensus pattern (14 bp):
CTTCTTTCAATAGT
Found at i:14918852 original size:87 final size:85
Alignment explanation
Indices: 14918740--14919026 Score: 283
Period size: 87 Copynumber: 3.3 Consensus size: 85
14918730 TAAACGACAA
* * * * *
14918740 GAATAAATCCTTAGACAAATTTTATTTAATTTTAATTTCTTGTTTTGGCAACAAAATCAAAATGT
1 GAATAAATCCCTAAACAAATTTTATTTAATTTTAATTTCTTGTTTTGGAAATAAAATAAAAATG-
*
14918805 AATAAAATCAGTTGAACGTCTG
65 AATAAAATCCGTTGAACGTC-G
* ** * *
14918827 GAATAAATCCCTAAACAAATTTTATTTAACTTTAATTTC-TCATTTGGAAATAATATAAAAAAAG
1 GAATAAATCCCTAAACAAATTTTATTTAATTTTAATTTCTTGTTTTGGAAATAAAAT-AAAAATG
* *
14918891 AATAAAATCCGTTCAACGATGG
65 AATAAAATCCGTTGAACG-TCG
* * * * * * *
14918913 GAATAAATCTCAAAATAGATTTTATTTTAATTTTAA-TACTCGTTTTGGAAATAAAATTAAAATT
1 GAATAAATCCCTAAACAAATTTTA-TTTAATTTTAATTTCTTGTTTTGGAAATAAAA-TAAAAAT
*
14918977 GGAATAAAATCCGTTGAACGGCG
64 -GAATAAAATCCGTTGAACGTCG
14919000 GTAATAAATCCC-AAACCAAATTTTATT
1 G-AATAAATCCCTAAA-CAAATTTTATT
14919027 CACTTTGAAA
Statistics
Matches: 161, Mismatches: 31, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
86 51 0.32
87 75 0.47
88 35 0.22
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.35
Consensus pattern (85 bp):
GAATAAATCCCTAAACAAATTTTATTTAATTTTAATTTCTTGTTTTGGAAATAAAATAAAAATGA
ATAAAATCCGTTGAACGTCG
Found at i:14918935 original size:86 final size:88
Alignment explanation
Indices: 14918805--14919026 Score: 234
Period size: 88 Copynumber: 2.5 Consensus size: 88
14918795 ATCAAAATGT
* * * * * *
14918805 AATAAAATCAGTTGAACGTCTGGAATAAATCCCTAAACAAATTTTA-TTTAACTTTAATTTCTC-
1 AATAAAATCCGTTCAACGACGGGAATAAATCCCAAAACAAATTTTATTTTAACTTTAA-TACTCG
*
14918868 ATTTGGAAATAATA-TAAAAAAAG
65 ATTTGGAAATAAAATTAAAAAAAG
* * * * * *
14918891 AATAAAATCCGTTCAACGATGGGAATAAATCTCAAAATAGATTTTATTTTAATTTTAATACTCGT
1 AATAAAATCCGTTCAACGACGGGAATAAATCCCAAAACAAATTTTATTTTAACTTTAATACTCGA
***
14918956 TTTGGAAATAAAATTAAAATTGG
66 TTTGGAAATAAAATTAAAAAAAG
* * * *
14918979 AATAAAATCCGTTGAACGGCGGTAATAAATCCCAAACCAAATTTTATT
1 AATAAAATCCGTTCAACGACGGGAATAAATCCCAAAACAAATTTTATT
14919027 CACTTTGAAA
Statistics
Matches: 109, Mismatches: 24, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
86 41 0.38
87 22 0.20
88 46 0.42
ACGTcount: A:0.43, C:0.12, G:0.11, T:0.33
Consensus pattern (88 bp):
AATAAAATCCGTTCAACGACGGGAATAAATCCCAAAACAAATTTTATTTTAACTTTAATACTCGA
TTTGGAAATAAAATTAAAAAAAG
Found at i:14922293 original size:44 final size:43
Alignment explanation
Indices: 14922232--14922824 Score: 264
Period size: 44 Copynumber: 13.7 Consensus size: 43
14922222 GAAGATGGCG
14922232 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CAAT
* * * * *
14922276 AATCCTATCTCCTTGAAGTCGCAGTGGAGCGGATTAAAATCACA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCA-AT
* * * * * *
14922320 GATCTTATCTCTCTAAAGTTGCAG-AGAGCAGA-T--CGCATCT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCA-AT
* * * * * *
14922360 AGTCTTATCTCCCTGAAGTTACAGTGAAGCAGACT-AAGTAAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAA-T
* * * * *
14922403 AAGCCTTATC-CTCCTGAAGTTGTAGT-GAGGCAGACTGAAGATG-GAG
1 AA-TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAA-A-GCAAT
**
14922449 AATCTTATCTCCCTGAAGTTATAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CAAT
* * * * *
14922493 AATCCTATCTCCCTAAAGTTACAGTGGAGCGGATTAAAATCACA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCA-AT
* * * * *
14922537 GATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T--CGCATCT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCA-AT
* * * * * *
14922577 AGTCTTATCTCCCTGAAGTTGCAGTGGAACATACT-AAGTAAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAA-T
* * * **
14922620 AAGCCTTATC-CTCCTGAAGTTGTAGT-GAGGCAGAGTGAAGATG-ACG
1 AA-TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAA-A-GCAAT
*
14922666 AATCTTATCTCCCTCAAGTTGCAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CAAT
* ** *
14922710 AAT-TCTATCTCCTTGAAGTTGCAGTGGAGTGGATTAAAATCACA-
1 AATCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCA-AT
* * * *
14922754 GATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T--CGC-AT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT
*
14922792 CGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA
1 --AATCTTATCTCCCTGAAGTTGCAGTGGAGCA
14922825 TACCCAAGAA
Statistics
Matches: 405, Mismatches: 100, Indels: 91
0.68 0.17 0.15
Matches are distributed among these distances:
37 1 0.00
39 5 0.01
40 61 0.15
41 16 0.04
42 7 0.02
43 31 0.08
44 206 0.51
45 60 0.15
46 12 0.03
47 4 0.01
48 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT
Found at i:14922592 original size:217 final size:217
Alignment explanation
Indices: 14922217--14922824 Score: 1040
Period size: 217 Copynumber: 2.8 Consensus size: 217
14922207 GCAATTTAAA
*
14922217 AGACTGAAGATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCT
1 AGACTGAAGATGGAGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCT
* *
14922282 ATCTCCTTGAAGTCGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTAAAGTTGCAGAGA
66 ATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGA
*
14922347 GCAGATCGCATCTAGTCTTATCTCCCTGAAGTTACAGTGAAGCAGACTAAGTAAGCAAGCCTTAT
131 GCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTAAGTAAGCAAGCCTTAT
14922412 CCTCCTGAAGTTGTAGTGAGGC
196 CCTCCTGAAGTTGTAGTGAGGC
**
14922434 AGACTGAAGATGGAGAATCTTATCTCCCTGAAGTTATAGTGGAGCAGATTAAAGCCAATAATCCT
1 AGACTGAAGATGGAGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCT
* * *
14922499 ATCTCCCTAAAGTTACAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGA
66 ATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGA
*
14922564 GCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAA-CATACTAAGTAAGCAAGCCTTA
131 GCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGT-GAAGCAGACTAAGTAAGCAAGCCTTA
14922628 TCCTCCTGAAGTTGTAGTGAGGC
195 TCCTCCTGAAGTTGTAGTGAGGC
* * *
14922651 AGAGTGAAGAT-GACGAATCTTATCTCCCTCAAGTTGCAGTGGAGCAGATTAAAGCCAATAATTC
1 AGACTGAAGATGGA-GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCC
*
14922715 TATCTCCTTGAAGTTGCAGTGGAGTGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAG
65 TATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAG
* *
14922780 AGCAGATCGCATCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA
130 AGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGAAGCA
14922825 TACCCAAGAA
Statistics
Matches: 367, Mismatches: 21, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
216 4 0.01
217 360 0.98
218 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (217 bp):
AGACTGAAGATGGAGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCT
ATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGA
GCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTAAGTAAGCAAGCCTTAT
CCTCCTGAAGTTGTAGTGAGGC
Found at i:14922843 original size:45 final size:45
Alignment explanation
Indices: 14922792--14922910 Score: 150
Period size: 45 Copynumber: 2.6 Consensus size: 45
14922782 CAGATCGCAT
*
14922792 CGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCATACCCAAGAAAG
1 CGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACCCAAGAAAG
* * * * *
14922837 CGAGTCTTAGCTCCCTAAAGTTCCAGTGGAGCAAACTCAAGAAAT
1 CGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACCCAAGAAAG
* *
14922882 CAAGTCTTATC-CACCTGAAATTGCAGTGG
1 CGAGTCTTATCTC-CCTGAAGTTGCAGTGG
14922911 GGCAGACTAA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
44 1 0.02
45 61 0.98
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (45 bp):
CGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACCCAAGAAAG
Done.