Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 50 of 205
Found at i:14923492 original size:19 final size:19
Alignment explanation
Indices: 14923468--14923521 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
14923458 CATCTTCAAG
14923468 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14923487 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14923506 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
14923522 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14923546 original size:22 final size:21
Alignment explanation
Indices: 14923468--14923546 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 21
14923458 CATCTTCAAG
*
14923468 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAAAGATAT
14923487 GATATGTAATCTT--AGATAT
1 GATATGTAATCTTAAAGATAT
*
14923506 GATATGCAATCTTAGAAGATAT
1 GATATGTAATCTTA-AAGATAT
*
14923528 GATTTTGTAATCTTAAAGA
1 GA-TATGTAATCTTAAAGA
14923547 AATTAATTTG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
19 30 0.58
22 12 0.23
23 10 0.19
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (21 bp):
GATATGTAATCTTAAAGATAT
Found at i:14923556 original size:22 final size:23
Alignment explanation
Indices: 14923513--14923558 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
14923503 TATGATATGC
* *
14923513 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGAAATGAATTTGT
*
14923536 AATCTTA-AAGAAATTAATTTGT
1 AATCTTAGAAGAAATGAATTTGT
14923558 A
1 A
14923559 GATACCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.41, C:0.04, G:0.13, T:0.41
Consensus pattern (23 bp):
AATCTTAGAAGAAATGAATTTGT
Found at i:14923775 original size:23 final size:23
Alignment explanation
Indices: 14923731--14923775 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
14923721 TCTTATTTTG
* *
14923731 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
14923754 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
14923776 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:14925512 original size:30 final size:30
Alignment explanation
Indices: 14925471--14925527 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
14925461 ATGGTAATAA
*
14925471 GTTGCTCACACAAGCTGATAGTATATTAGG
1 GTTGCTCACACAAGCGGATAGTATATTAGG
* *
14925501 GTTGTTCACACAAGCGGATATTATATT
1 GTTGCTCACACAAGCGGATAGTATATT
14925528 GAGGTTACCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (30 bp):
GTTGCTCACACAAGCGGATAGTATATTAGG
Found at i:14927588 original size:13 final size:13
Alignment explanation
Indices: 14927557--14927595 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
14927547 AAAAAAAAGT
*
14927557 ATTTTTCAAAAATA
1 ATTTTT-AAAAACA
14927571 ATTTTTAAAAACA
1 ATTTTTAAAAACA
*
14927584 CTTTTTAAAAAC
1 ATTTTTAAAAAC
14927596 TTTTTTAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 17 0.74
14 6 0.26
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (13 bp):
ATTTTTAAAAACA
Found at i:14929751 original size:22 final size:23
Alignment explanation
Indices: 14929726--14929785 Score: 77
Period size: 23 Copynumber: 2.7 Consensus size: 23
14929716 TTTATAGCAT
* *
14929726 ATAGTGTTTG-ATGTATTAACAA
1 ATAGGGTTTGCATGTAGTAACAA
* *
14929748 ATAGGGTTCGCATGTAGTAACAG
1 ATAGGGTTTGCATGTAGTAACAA
14929771 ATAGGGTTTGCATGT
1 ATAGGGTTTGCATGT
14929786 CGCAACATAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 8 0.25
23 24 0.75
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (23 bp):
ATAGGGTTTGCATGTAGTAACAA
Found at i:14929762 original size:23 final size:23
Alignment explanation
Indices: 14929736--14929813 Score: 79
Period size: 23 Copynumber: 3.5 Consensus size: 23
14929726 ATAGTGTTTG
*
14929736 ATGTATTAACAAATAGGGTTCGC
1 ATGTAGTAACAAATAGGGTTCGC
* *
14929759 ATGTAGTAACAGATAGGGTTTGC
1 ATGTAGTAACAAATAGGGTTCGC
* * *
14929782 ATGTCGCAAC--ATAGGGTTCAC
1 ATGTAGTAACAAATAGGGTTCGC
*
14929803 ATGTAATAACA
1 ATGTAGTAACA
14929814 GTTTAGGGTT
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
21 16 0.36
23 28 0.64
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (23 bp):
ATGTAGTAACAAATAGGGTTCGC
Found at i:14929813 original size:21 final size:21
Alignment explanation
Indices: 14929748--14929961 Score: 131
Period size: 21 Copynumber: 9.7 Consensus size: 21
14929738 GTATTAACAA
* *
14929748 ATAGGGTTCGCATGTAGTAAC
1 ATAGGGTTCACATGTAATAAC
** ***
14929769 AGATAGGGTTTGCATGTCGCAAC
1 --ATAGGGTTCACATGTAATAAC
14929792 ATAGGGTTCACATGTAATAAC
1 ATAGGGTTCACATGTAATAAC
**
14929813 AGTTTAGGGTTCACATGCCATAAC
1 A---TAGGGTTCACATGTAATAAC
* ** **
14929837 TTAGATTTTGCATGTAATAAC
1 ATAGGGTTCACATGTAATAAC
* *
14929858 ATAGGAGGTTTACATGTCATAAC
1 ATA-G-GGTTCACATGTAATAAC
* *
14929881 CTAGGGTTCACGTGTAATAAC
1 ATAGGGTTCACATGTAATAAC
*
14929902 ATAGGGGGTTCACATGTCATAAC
1 ATA--GGGTTCACATGTAATAAC
* * *
14929925 CTAAGGTTCACGTGTAATAAC
1 ATAGGGTTCACATGTAATAAC
14929946 ATAGGGGGTTCACATG
1 ATA--GGGTTCACATG
14929962 ATTAAACAGA
Statistics
Matches: 146, Mismatches: 36, Indels: 18
0.73 0.18 0.09
Matches are distributed among these distances:
21 66 0.45
22 2 0.01
23 60 0.41
24 18 0.12
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (21 bp):
ATAGGGTTCACATGTAATAAC
Found at i:14929874 original size:23 final size:23
Alignment explanation
Indices: 14929847--14929961 Score: 121
Period size: 23 Copynumber: 5.2 Consensus size: 23
14929837 TTAGATTTTG
*
14929847 CATGTAATAACATAGGAGGTTTA
1 CATGTAATAACATAGGAGGTTCA
* *
14929870 CATGTCATAACCTA-G-GGTTCA
1 CATGTAATAACATAGGAGGTTCA
* *
14929891 CGTGTAATAACATAGGGGGTTCA
1 CATGTAATAACATAGGAGGTTCA
* *
14929914 CATGTCATAACCTA--AGGTTCA
1 CATGTAATAACATAGGAGGTTCA
* *
14929935 CGTGTAATAACATAGGGGGTTCA
1 CATGTAATAACATAGGAGGTTCA
14929958 CATG
1 CATG
14929962 ATTAAACAGA
Statistics
Matches: 73, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
21 33 0.45
22 2 0.03
23 38 0.52
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (23 bp):
CATGTAATAACATAGGAGGTTCA
Found at i:14929897 original size:44 final size:44
Alignment explanation
Indices: 14929849--14929961 Score: 199
Period size: 44 Copynumber: 2.6 Consensus size: 44
14929839 AGATTTTGCA
* * *
14929849 TGTAATAACATAGGAGGTTTACATGTCATAACCTAGGGTTCACG
1 TGTAATAACATAGGGGGTTCACATGTCATAACCTAAGGTTCACG
14929893 TGTAATAACATAGGGGGTTCACATGTCATAACCTAAGGTTCACG
1 TGTAATAACATAGGGGGTTCACATGTCATAACCTAAGGTTCACG
14929937 TGTAATAACATAGGGGGTTCACATG
1 TGTAATAACATAGGGGGTTCACATG
14929962 ATTAAACAGA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 66 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (44 bp):
TGTAATAACATAGGGGGTTCACATGTCATAACCTAAGGTTCACG
Found at i:14930048 original size:63 final size:62
Alignment explanation
Indices: 14929973--14930093 Score: 199
Period size: 63 Copynumber: 1.9 Consensus size: 62
14929963 TTAAACAGAT
* *
14929973 AGGGTTCGCATAATGAATCCTATATGATTTTTCATATGGGTTCA-CAATAGGGGTTCGTATGAA
1 AGGGTTCACATAATGAATCCTATATGATTTTGCATA-GGGTT-AGCAATAGGGGTTCGTATGAA
14930036 AGGGTTCACATAATGAATCCTATATGATTTTGCATAGGGTTAGCAATAGGGGTTCGTA
1 AGGGTTCACATAATGAATCCTATATGATTTTGCATAGGGTTAGCAATAGGGGTTCGTA
14930094 CACAGGGTTC
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
61 1 0.02
62 20 0.36
63 34 0.62
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (62 bp):
AGGGTTCACATAATGAATCCTATATGATTTTGCATAGGGTTAGCAATAGGGGTTCGTATGAA
Found at i:14931047 original size:2 final size:2
Alignment explanation
Indices: 14931040--14931065 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14931030 GAATTGATCT
14931040 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
14931066 ATTAGACAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14942608 original size:4 final size:4
Alignment explanation
Indices: 14942599--14942630 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
14942589 TTCTCAGCAT
14942599 ATTA ATTA ATTA ATTA ATTA ATT- ATTA ATTA A
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA A
14942631 ATTTTCAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
ATTA
Found at i:14947104 original size:6 final size:6
Alignment explanation
Indices: 14947093--14947132 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
14947083 AAAAATGGAT
14947093 TTGGTA TTGGTA TTGGTA TTGGTA TTGGTA TTGGTA TTGG
1 TTGGTA TTGGTA TTGGTA TTGGTA TTGGTA TTGGTA TTGG
14947133 GCGTGACTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.50
Consensus pattern (6 bp):
TTGGTA
Found at i:14947700 original size:16 final size:16
Alignment explanation
Indices: 14947679--14947714 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
14947669 TTTGGTTCGC
14947679 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
14947695 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
14947711 TGTA
1 TGTA
14947715 ATAGTAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:14947967 original size:16 final size:16
Alignment explanation
Indices: 14947930--14947971 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
14947920 TTAAACATAT
*
14947930 TTAAACATA-ATTTTTA
1 TTAAA-ATATATTTTAA
14947946 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
14947961 TTAAAATATAT
1 TTAAAATATAT
14947972 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:14951152 original size:16 final size:16
Alignment explanation
Indices: 14951127--14951157 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14951117 TACCAAATAC
14951127 TTGTTGTTTAATCAAG
1 TTGTTGTTTAATCAAG
*
14951143 TTGTTTTTTAATCAA
1 TTGTTGTTTAATCAA
14951158 TCATAATAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.06, G:0.13, T:0.55
Consensus pattern (16 bp):
TTGTTGTTTAATCAAG
Found at i:14951176 original size:81 final size:81
Alignment explanation
Indices: 14951083--14951272 Score: 371
Period size: 81 Copynumber: 2.3 Consensus size: 81
14951073 ACATTAACAT
14951083 TAACAATGAATATTTGTTTTTTAATCAACAATGTTACCAAATACTTGTTGTTTAATCAAGTTGTT
1 TAACAATGAATATTTGTTTTTTAATCAACAATGTTACCAAATACTTGTTGTTTAATCAAGTTGTT
14951148 TTTTAATCAATCATAA
66 TTTTAATCAATCATAA
*
14951164 TAACAATGAATATTTGTTTTTTAATCAACAATGTTACCAAATACTTTTTGTTTAATCAAGTTGTT
1 TAACAATGAATATTTGTTTTTTAATCAACAATGTTACCAAATACTTGTTGTTTAATCAAGTTGTT
14951229 TTTTAATCAATCATAA
66 TTTTAATCAATCATAA
14951245 TAACAATGAATATTTGTTTTTTAATCAA
1 TAACAATGAATATTTGTTTTTTAATCAA
14951273 GTTGTTTACT
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 108 1.00
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.45
Consensus pattern (81 bp):
TAACAATGAATATTTGTTTTTTAATCAACAATGTTACCAAATACTTGTTGTTTAATCAAGTTGTT
TTTTAATCAATCATAA
Found at i:14952127 original size:52 final size:52
Alignment explanation
Indices: 14952070--14952398 Score: 237
Period size: 52 Copynumber: 6.0 Consensus size: 52
14952060 GGTGTTAACT
14952070 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
* * * * * *
14952122 CATTTCAAACATTTATCAGTGAGCA---AACATTTCAA-AGCATTCAAAGTTGAAGTAGTA-
1 CATTTCAAACA-TT-TCA--AAGCATTCAA-AGTT-AACAGTA-CCAAA-TT-AA-CAGCAC
** *
14952179 -ATAGC-ACCATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
* *
14952229 CATTTCAAACATTTATCAGTGAGCAAACATTTCAAAGCATTCAA-AGTTA--AAGTAGTAACAGC
1 CATTTCAAACA-TT-TC----A--AAGCA-TTCAAAG--TT-AACAG-TACCAA--ATTAACAGC
14952291 AC
51 AC
* *
14952293 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAATAACAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
*
14952345 CATTTCAAACATTTCAAAGCATTCAAAATTAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
14952397 CA
1 CA
14952399 AGACTATGCA
Statistics
Matches: 215, Mismatches: 27, Indels: 70
0.69 0.09 0.22
Matches are distributed among these distances:
49 3 0.01
50 2 0.01
51 9 0.04
52 83 0.39
53 19 0.09
54 17 0.08
55 16 0.07
56 13 0.06
57 2 0.01
58 5 0.02
60 4 0.02
61 7 0.03
62 4 0.02
63 6 0.03
64 25 0.12
ACGTcount: A:0.44, C:0.21, G:0.09, T:0.26
Consensus pattern (52 bp):
CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
Found at i:14952265 original size:107 final size:110
Alignment explanation
Indices: 14952078--14952358 Score: 451
Period size: 107 Copynumber: 2.5 Consensus size: 110
14952068 CTCATTTCAA
14952078 ACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATTTATCAGTG
1 ACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATTTATCAGTG
* *
14952143 AGCAAACATTTCAAAGCATTCAAAGTTGAAGTAGTAATAG-CA-C
66 AGCAAACATTTCAAAGCATTCAAAGTTAAAGTAGTAACAGCCATC
14952186 -CATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATTTATCAGTG
1 ACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATTTATCAGTG
14952250 AGCAAACATTTCAAAGCATTCAAAGTTAAAGTAGTAACAGCACCATTTC
66 AGCAAACATTTCAAAGCATTCAAAGTTAAAGTAGTAACAG--CCA--TC
* *
14952299 AAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAATAACACCATTTCAAACATTT
1 --ACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATTT
14952359 CAAAGCATTC
Statistics
Matches: 160, Mismatches: 4, Indels: 10
0.92 0.02 0.06
Matches are distributed among these distances:
107 102 0.64
110 2 0.01
113 1 0.01
116 55 0.34
ACGTcount: A:0.43, C:0.20, G:0.10, T:0.27
Consensus pattern (110 bp):
ACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATTTATCAGTG
AGCAAACATTTCAAAGCATTCAAAGTTAAAGTAGTAACAGCCATC
Found at i:14952389 original size:14 final size:14
Alignment explanation
Indices: 14952370--14952399 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14952360 AAAGCATTCA
*
14952370 AAATTAACAGTACC
1 AAATTAACAGCACC
14952384 AAATTAACAGCACC
1 AAATTAACAGCACC
14952398 AA
1 AA
14952400 GACTATGCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.23, G:0.07, T:0.17
Consensus pattern (14 bp):
AAATTAACAGCACC
Found at i:14952612 original size:21 final size:22
Alignment explanation
Indices: 14952569--14952623 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
14952559 AAGCAGATGG
14952569 AGCCACTGCAAATAAATTATAT
1 AGCCACTGCAAATAAATTATAT
* *
14952591 AGCCACTGCAAA-CAATTGTAT
1 AGCCACTGCAAATAAATTATAT
14952612 AGCCACATGCAA
1 AGCCAC-TGCAA
14952624 TGGGGGGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 13 0.43
22 17 0.57
ACGTcount: A:0.42, C:0.24, G:0.13, T:0.22
Consensus pattern (22 bp):
AGCCACTGCAAATAAATTATAT
Found at i:14956851 original size:29 final size:32
Alignment explanation
Indices: 14956808--14956876 Score: 99
Period size: 30 Copynumber: 2.2 Consensus size: 32
14956798 TTATAGCATG
14956808 TTTATTTTTATTTTAAAAATAGG-AATT-TTT
1 TTTATTTTTATTTTAAAAATAGGAAATTATTT
*
14956838 TTTATTTTT-TTTTAAACATAGGAAATTATTT
1 TTTATTTTTATTTTAAAAATAGGAAATTATTT
*
14956869 ATTATTTT
1 TTTATTTT
14956877 ATTAGTAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
29 12 0.34
30 13 0.37
31 10 0.29
ACGTcount: A:0.32, C:0.01, G:0.06, T:0.61
Consensus pattern (32 bp):
TTTATTTTTATTTTAAAAATAGGAAATTATTT
Found at i:14968580 original size:3 final size:3
Alignment explanation
Indices: 14968572--14968617 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
14968562 NTATTACTGA
* *
14968572 ATT ATT ATT AGT -TT ATT ATT ATT A-T ATT ATAT ATT TTT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT
14968616 AT
1 AT
14968618 ACTTACCGCA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
2 3 0.08
3 30 0.83
4 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:14968587 original size:11 final size:10
Alignment explanation
Indices: 14968573--14968615 Score: 52
Period size: 11 Copynumber: 4.1 Consensus size: 10
14968563 TATTACTGAA
14968573 TTATTATTAGT
1 TTATTATTA-T
14968584 TTATTATTAT
1 TTATTATTAT
14968594 TATATTATATAT
1 T-TATTAT-TAT
14968606 TT-TTATTAT
1 TTATTATTAT
14968615 T
1 T
14968616 ATACTTACCG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
9 4 0.13
10 6 0.20
11 16 0.53
12 4 0.13
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (10 bp):
TTATTATTAT
Found at i:14968601 original size:14 final size:14
Alignment explanation
Indices: 14968572--14968617 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
14968562 NTATTACTGA
14968572 ATTATTATTAGT-TT
1 ATTATTATTA-TATT
14968586 ATTATTATTATATT
1 ATTATTATTATATT
14968600 ATATATT-TT-TATT
1 AT-TATTATTATATT
14968613 ATTAT
1 ATTAT
14968618 ACTTACCGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
12 3 0.10
13 7 0.23
14 16 0.53
15 4 0.13
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (14 bp):
ATTATTATTATATT
Found at i:14968949 original size:20 final size:20
Alignment explanation
Indices: 14968916--14968957 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
14968906 TACTAGTATA
14968916 TTATGTTTATAATTTTATTT
1 TTATGTTTATAATTTTATTT
14968936 TTAT-TTTATAAATTTTATTT
1 TTATGTTTAT-AATTTTATTT
14968956 TT
1 TT
14968958 TTTATTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (20 bp):
TTATGTTTATAATTTTATTT
Found at i:14968959 original size:23 final size:23
Alignment explanation
Indices: 14968933--14968989 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
14968923 TATAATTTTA
14968933 TTTTTATTTTATAAATT-TTATTT
1 TTTTTATTTT-TAAATTGTTATTT
**
14968956 TTTTTATTTTTATTTTGTTATTT
1 TTTTTATTTTTAAATTGTTATTT
*
14968979 TTGTTATTTTT
1 TTTTTATTTTT
14968990 GTATACATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
22 4 0.13
23 26 0.87
ACGTcount: A:0.18, C:0.00, G:0.04, T:0.79
Consensus pattern (23 bp):
TTTTTATTTTTAAATTGTTATTT
Found at i:14968980 original size:15 final size:15
Alignment explanation
Indices: 14968931--14968994 Score: 58
Period size: 14 Copynumber: 4.1 Consensus size: 15
14968921 TTTATAATTT
*
14968931 TATTTTTATTTTATA
1 TATTTTTATTTTTTA
* *
14968946 -AATTTTATTTTTTT
1 TATTTTTATTTTTTA
14968960 TATTTTTATTTTGTTA
1 TATTTTTATTTT-TTA
*
14968976 TTTTTGTTATTTTTGTA
1 TATTT-TTATTTTT-TA
14968993 TA
1 TA
14968995 CATGTATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
14 11 0.29
15 10 0.26
16 7 0.18
17 10 0.26
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.75
Consensus pattern (15 bp):
TATTTTTATTTTTTA
Found at i:14968980 original size:29 final size:29
Alignment explanation
Indices: 14968928--14968989 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
14968918 ATGTTTATAA
*
14968928 TTTTATTTTTATTTTATAAATTTTATTTT
1 TTTTATTTTTATTTTATAAATTTTATTAT
* * * *
14968957 TTTTATTTTTATTTTGTTATTTTTGTTAT
1 TTTTATTTTTATTTTATAAATTTTATTAT
14968986 TTTT
1 TTTT
14968990 GTATACATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (29 bp):
TTTTATTTTTATTTTATAAATTTTATTAT
Found at i:14977057 original size:47 final size:47
Alignment explanation
Indices: 14976998--14977088 Score: 164
Period size: 47 Copynumber: 1.9 Consensus size: 47
14976988 CAGCCAAGAC
14976998 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTAATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTAATGAATGTGAA
* *
14977045 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTAATGAATGT
14977089 TAACACTTTC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.31
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTAATGAATGTGAA
Found at i:14977217 original size:47 final size:47
Alignment explanation
Indices: 14977148--14978108 Score: 1019
Period size: 47 Copynumber: 19.8 Consensus size: 47
14977138 ACACTTTCTA
14977148 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* * *
14977195 GCCGATGTGATGGATGTGAAAGTGTATATATATGGGATAAAGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG
* * * *
14977244 GCTGATGTGATGCATGTGAAAGTGTATATATATGGGATAAAGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG
* * * *
14977293 GCTGATGTGATGCATGTGAAAGTGTATATATATGGGATAAAGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG
* * * *
14977342 GCTGATGTGATGCATGTGAAAGTGTATATATATGGGATAAAGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG
* * * *
14977391 GCTGATGTGATGCATGTGAAAGTGTATATATATGGGATAAAGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG
14977440 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* * * **
14977487 GCCGTGATAAGGCCTAATGGCCGATGTGATGAA-TGTGA-A-A-GTGTATATGTGTGATAA-G
1 GCC--GAT---G--TGAT-G--AATGTGA--AAGTGT-ATATATGTG-ATAAG-G-CCTAATG
* ** * *
14977545 GCCTAATG-GCCG-ATGTGATGAA-TGTGA-A-A-GTGTATATATGTG-ATAAGGCCTAATG
1 GCC-GATGTGATGAATGTGA--AAGTGT-ATATATGTG-ATA-A-G-GCCTAA---T----G
* *
14977600 GCCGATGTGATGAATGTGAAAGTGTACATATGTTATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* *
14977647 GCCGATGTGATGAATGTGAAAGTGTACATATGTTATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* *
14977694 GCCGATGTGATGAATGTGAAAGTGTACATATGTTATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* *
14977741 GCCGATGTGATGAATGTGAAAGTGTACATATGTTATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* *
14977788 GCCGATGTGATGAATGTGAAAGTGTACATATGTTATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* *
14977835 GCCGATGTGATGAATGTGAAAGTGTACATATGTTATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
14977882 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
14977929 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
14977976 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* * * *
14978023 GCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* * * * *
14978070 GCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
14978109 TCCCGAAGGG
Statistics
Matches: 841, Mismatches: 38, Indels: 70
0.89 0.04 0.07
Matches are distributed among these distances:
47 525 0.62
49 243 0.29
50 1 0.00
52 1 0.00
53 1 0.00
54 14 0.02
55 12 0.01
56 13 0.02
57 16 0.02
58 9 0.01
59 6 0.01
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
Found at i:14977495 original size:19 final size:19
Alignment explanation
Indices: 14977471--14977509 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
14977461 GTGTATATAT
14977471 GTGATAAGGCCTAATGGCC
1 GTGATAAGGCCTAATGGCC
14977490 GTGATAAGGCCTAATGGCC
1 GTGATAAGGCCTAATGGCC
14977509 G
1 G
14977510 ATGTGATGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.21, G:0.33, T:0.21
Consensus pattern (19 bp):
GTGATAAGGCCTAATGGCC
Found at i:14977509 original size:66 final size:66
Alignment explanation
Indices: 14977426--14977556 Score: 244
Period size: 66 Copynumber: 2.0 Consensus size: 66
14977416 ATATATATGG
14977426 GATAAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 GATAAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14977491 T
66 T
* *
14977492 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCG
1 GATAAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14977557 ATGTGATGAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.27
Consensus pattern (66 bp):
GATAAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
T
Found at i:14977577 original size:113 final size:114
Alignment explanation
Indices: 14977377--14977603 Score: 384
Period size: 113 Copynumber: 2.0 Consensus size: 114
14977367 ATATATATGG
* *
14977377 GATAAAGCCTAATGGCTGATGTGATGCATGTGAAAGTGTATATATATGGGATAAAGCCTAATGGC
1 GATAAAGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGGGATAAAGCCTAATGGC
14977442 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGT
65 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGT
* * * *
14977492 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATGTGTGATAAGGCCTAATGGCC
1 GATAAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGGGATAAAGCCTAATGGCC
14977556 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
66 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14977604 ATGTGATGAA
Statistics
Matches: 106, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
113 71 0.67
115 35 0.33
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (114 bp):
GATAAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGGGATAAAGCCTAATGGCC
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGT
Found at i:14977620 original size:160 final size:162
Alignment explanation
Indices: 14977328--14977650 Score: 506
Period size: 160 Copynumber: 2.0 Consensus size: 162
14977318 ATATATATGG
* *
14977328 GATAAAGCCTAATGGCTGATGTGATGCATGTGAAAGTGTATATATATGGGATAAAGCCTAATGGC
1 GATAAAGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGGGATAAAGCCTAATGGC
* *
14977393 TGATGTGATGCATGTGAAAGTGTATATATATGGGATAAAGCCTAATGGCCGATGTGATGAATGTG
65 CGATGTGATGAATGTGAAAGTG-ATATATATGGGATAAAGCCTAATGGCCGATGTGATGAATGTG
*
14977458 AAAGTGTATATATGTGATAAGGCCTAATGGCCGT
129 AAAGTGTACATATGTGATAAGGCCTAATGGCCGT
* * * *
14977492 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATGTGTGATAAGGCCTAATGGCC
1 GATAAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGGGATAAAGCCTAATGGCC
* *
14977556 GATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66 GATGTGATGAATGTGAAAGTGATATATATGGGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
*
14977620 AGTGTACATATGTTATAAGGCCTAATGGCCG
131 AGTGTACATATGTGATAAGGCCTAATGGCCG
14977651 ATGTGATGAA
Statistics
Matches: 147, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
160 70 0.48
162 42 0.29
164 35 0.24
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.29
Consensus pattern (162 bp):
GATAAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGGGATAAAGCCTAATGGCC
GATGTGATGAATGTGAAAGTGATATATATGGGATAAAGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTACATATGTGATAAGGCCTAATGGCCGT
Found at i:14978283 original size:37 final size:37
Alignment explanation
Indices: 14978227--14978305 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
14978217 CCGAGCTCTA
* *
14978227 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
14978264 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
14978301 AAGAC
1 AAGAC
14978306 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:14981168 original size:20 final size:19
Alignment explanation
Indices: 14981137--14981182 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
14981127 TAATTTAGCC
14981137 ATTTTTTA-TTTTAATTTTA
1 ATTTTTTATTTTTAA-TTTA
*
14981156 ATATTTTTGTTTTTAATTTA
1 AT-TTTTTATTTTTAATTTA
14981176 ATTTTTT
1 ATTTTTT
14981183 CATTCTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 7 0.29
20 11 0.46
21 6 0.25
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (19 bp):
ATTTTTTATTTTTAATTTA
Found at i:14992677 original size:11 final size:11
Alignment explanation
Indices: 14992663--14992761 Score: 55
Period size: 11 Copynumber: 9.2 Consensus size: 11
14992653 CTTTCTTTTC
*
14992663 TTTTGTTATTA
1 TTTTATTATTA
14992674 TTTTATTATTA
1 TTTTATTATTA
*
14992685 TTTTA--ATTG
1 TTTTATTATTA
*
14992694 TTTTCTTATTGA
1 TTTTATTATT-A
*
14992706 TATTATT-TTA
1 TTTTATTATTA
* *
14992716 TTTTCTTAGTA
1 TTTTATTATTA
*
14992727 TTTCTATTA-GA
1 TTT-TATTATTA
14992738 -TTTAGTTATTA
1 TTTTA-TTATTA
* *
14992749 ATTTATTGTTA
1 TTTTATTATTA
14992760 TT
1 TT
14992762 AGCTTTAAAG
Statistics
Matches: 66, Mismatches: 14, Indels: 16
0.69 0.15 0.17
Matches are distributed among these distances:
9 9 0.14
10 11 0.17
11 33 0.50
12 13 0.20
ACGTcount: A:0.23, C:0.03, G:0.07, T:0.67
Consensus pattern (11 bp):
TTTTATTATTA
Found at i:14998174 original size:12 final size:12
Alignment explanation
Indices: 14998157--14998182 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14998147 CAAAATAGGA
14998157 TTTTAGCGGCGT
1 TTTTAGCGGCGT
14998169 TTTTAGCGGCGT
1 TTTTAGCGGCGT
14998181 TT
1 TT
14998183 GGACAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:14998480 original size:41 final size:41
Alignment explanation
Indices: 14998364--14998610 Score: 305
Period size: 41 Copynumber: 5.8 Consensus size: 41
14998354 TTTTGATGCA
* *
14998364 TTTAGCAGCGTTTTTGAGAAAGTGCCGCTAATGCTCGGGGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGC
*
14998405 TTTAGCGGCGTTTTTTGAGAAAGCGCCGCTAATGCTCGGGCC
1 TTTAGCGGCG-TTTTTGAGAAAGCGCCGCTAATGCTCGGGGC
*
14998447 TTTAGCGGCGTTTTTGAGAAAACGCCAAAAATGCCACTAATGCTCGGGGC
1 TTTAGCGGCGTTTTTGAG-AAA-G-C------GCCGCTAATGCTCGGGGC
*
14998497 TTTAGCGGCATTTTTGAGAAAGCGCCGCTAATGCTCGGGGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGC
* * *
14998538 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTTATGCTCGTGCC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGC
* * *
14998579 TTTAGCGGCGTTTTTGAAAAAACGTCGCTAAT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAAT
14998611 AATAAAATCT
Statistics
Matches: 181, Mismatches: 15, Indels: 20
0.84 0.07 0.09
Matches are distributed among these distances:
41 99 0.55
42 42 0.23
43 1 0.01
44 1 0.01
47 1 0.01
48 1 0.01
49 3 0.02
50 33 0.18
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGGC
Found at i:14998547 original size:91 final size:92
Alignment explanation
Indices: 14998386--14998563 Score: 313
Period size: 91 Copynumber: 1.9 Consensus size: 92
14998376 TTTGAGAAAG
* *
14998386 TGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTTGAGAAAGCGCCGCTAATGCTCGGGCCTTTA
1 TGCCACTAATGCTCGGGGCTTTAGCGGCGATTTTTGAGAAAGCGCCGCTAATGCTCGGGCCTTTA
14998451 GCGGCGTTTTTGAGAAAACGCCAAAAA
66 GCGGCGTTTTTGAGAAAACGCCAAAAA
*
14998478 TGCCACTAATGCTCGGGGCTTTAGCGGC-ATTTTTGAGAAAGCGCCGCTAATGCTCGGGGCTTTA
1 TGCCACTAATGCTCGGGGCTTTAGCGGCGATTTTTGAGAAAGCGCCGCTAATGCTCGGGCCTTTA
*
14998542 GCGGCGTTTTTGAGAAAGCGCC
66 GCGGCGTTTTTGAGAAAACGCC
14998564 GCTTATGCTC
Statistics
Matches: 82, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
91 55 0.67
92 27 0.33
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.26
Consensus pattern (92 bp):
TGCCACTAATGCTCGGGGCTTTAGCGGCGATTTTTGAGAAAGCGCCGCTAATGCTCGGGCCTTTA
GCGGCGTTTTTGAGAAAACGCCAAAAA
Found at i:15000491 original size:16 final size:16
Alignment explanation
Indices: 15000470--15000537 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
15000460 TTTGGTTCGC
15000470 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
15000486 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
15000502 TGTATTGGATTAAAGG
1 TGTATTGGATTAGAGG
15000518 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
15000534 TGTA
1 TGTA
15000538 ATAGCAAATT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:15000807 original size:17 final size:16
Alignment explanation
Indices: 15000753--15000807 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
15000743 TTAATCATAT
*
15000753 TTAAACATA-ATTTTTA
1 TTAAA-ATATATTTTAA
15000769 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
15000784 TTAAAATATATGATTTAA
1 TTAAAATATAT--TTTAA
15000802 -TAAAAT
1 TTAAAAT
15000808 TCTTAATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:15002581 original size:19 final size:19
Alignment explanation
Indices: 15002557--15002593 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
15002547 ATAAAATATT
15002557 ATCGTTCAGGTACATATAC
1 ATCGTTCAGGTACATATAC
*
15002576 ATCGTTCAGGTGCATATA
1 ATCGTTCAGGTACATATA
15002594 GAGGTCATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (19 bp):
ATCGTTCAGGTACATATAC
Found at i:15003677 original size:15 final size:15
Alignment explanation
Indices: 15003653--15003682 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15003643 GGAGGGTAAA
*
15003653 ACAGAGAGCAAATCG
1 ACAGAAAGCAAATCG
15003668 ACAGAAAGCAAATCG
1 ACAGAAAGCAAATCG
15003683 GCCAAAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.20, G:0.23, T:0.07
Consensus pattern (15 bp):
ACAGAAAGCAAATCG
Found at i:15008663 original size:20 final size:21
Alignment explanation
Indices: 15008628--15008666 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
15008618 GGACTAAATC
*
15008628 GGAAACATATAGAAATTTTAG
1 GGAAACATATAAAAATTTTAG
15008649 GGAAA-ATATAAAAATTTT
1 GGAAACATATAAAAATTTT
15008667 CAAAATGCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.51, C:0.03, G:0.15, T:0.31
Consensus pattern (21 bp):
GGAAACATATAAAAATTTTAG
Found at i:15010957 original size:24 final size:24
Alignment explanation
Indices: 15010872--15011027 Score: 174
Period size: 25 Copynumber: 6.4 Consensus size: 24
15010862 ATGAGCTATG
*
15010872 AATCGGTATGCTC-TCACGAGCTGTA
1 AATCGGTAAGCTCAT-ACGAGCTG-A
*
15010897 AATCGGTAAGCTCATATGAGCTGA
1 AATCGGTAAGCTCATACGAGCTGA
* *
15010921 GAATTGGTAAGCT-ATTACGAGTTGA
1 -AATCGGTAAGCTCA-TACGAGCTGA
15010946 AATCGGTAAGCTCATACGAGCTGA
1 AATCGGTAAGCTCATACGAGCTGA
*
15010970 AATCGGTAAGATCATACGAGCTGA
1 AATCGGTAAGCTCATACGAGCTGA
* *
15010994 GAATCGATAAGCTC-TCACGAGCTAA
1 -AATCGGTAAGCTCAT-ACGAGCTGA
15011019 AATCGGTAA
1 AATCGGTAA
15011028 CCCCTAATGA
Statistics
Matches: 113, Mismatches: 12, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
24 54 0.48
25 58 0.51
26 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.24
Consensus pattern (24 bp):
AATCGGTAAGCTCATACGAGCTGA
Found at i:15010967 original size:49 final size:49
Alignment explanation
Indices: 15010856--15011027 Score: 174
Period size: 49 Copynumber: 3.5 Consensus size: 49
15010846 GTACATGTAT
* * * *
15010856 GCTCATATGAGCT-ATGAATCGGTATGCTCTCACGAGCTGTAAATCGGTAA
1 GCTCATACGAGCTGA-GAATCGGTAAGCTATTACGAGCTG-AAATCGGTAA
* * *
15010906 GCTCATATGAGCTGAGAATTGGTAAGCTATTACGAGTTGAAATCGGTAA
1 GCTCATACGAGCTGAGAATCGGTAAGCTATTACGAGCTGAAATCGGTAA
* *
15010955 GCTCATACGAGCTGA-AATCGGTAAGATCA-TACGAGCTGAGAATCGATAA
1 GCTCATACGAGCTGAGAATCGGTAAGCT-ATTACGAGCTGA-AATCGGTAA
*
15011004 GCTC-TCACGAGCT-AAAATCGGTAA
1 GCTCAT-ACGAGCTGAGAATCGGTAA
15011028 CCCCTAATGA
Statistics
Matches: 107, Mismatches: 10, Indels: 11
0.84 0.08 0.09
Matches are distributed among these distances:
48 21 0.20
49 53 0.50
50 32 0.30
51 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (49 bp):
GCTCATACGAGCTGAGAATCGGTAAGCTATTACGAGCTGAAATCGGTAA
Found at i:15010992 original size:73 final size:74
Alignment explanation
Indices: 15010872--15011027 Score: 208
Period size: 73 Copynumber: 2.1 Consensus size: 74
15010862 ATGAGCTATG
* * * * * *
15010872 AATCGGTATGCTCTCACGAGCTGTAAATCGGTAAGCTCATATGAGCTGAGAATTGGTAAGCTATT
1 AATCGGTAAGCTCTCACGAGCTGTAAATCGGTAAGATCATACGAGCTGAGAATCGATAAGCTATC
* *
15010937 ACGAGTTGA
66 ACGAGCTAA
*
15010946 AATCGGTAAGCTCAT-ACGAGCTG-AAATCGGTAAGATCATACGAGCTGAGAATCGATAAGCTCT
1 AATCGGTAAGCTC-TCACGAGCTGTAAATCGGTAAGATCATACGAGCTGAGAATCGATAAGCTAT
15011009 CACGAGCTAA
65 CACGAGCTAA
15011019 AATCGGTAA
1 AATCGGTAA
15011028 CCCCTAATGA
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
73 51 0.71
74 20 0.28
75 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.24
Consensus pattern (74 bp):
AATCGGTAAGCTCTCACGAGCTGTAAATCGGTAAGATCATACGAGCTGAGAATCGATAAGCTATC
ACGAGCTAA
Found at i:15024933 original size:19 final size:22
Alignment explanation
Indices: 15024900--15024939 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
15024890 TGAAAAATAT
15024900 GGGAAGAGAGAAAAAT-AAAAA
1 GGGAAGAGAGAAAAATGAAAAA
15024921 GGGAAGA-AG-AAAATGAAAA
1 GGGAAGAGAGAAAAATGAAAA
15024940 CAAATAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 6 0.33
21 7 0.39
ACGTcount: A:0.65, C:0.00, G:0.30, T:0.05
Consensus pattern (22 bp):
GGGAAGAGAGAAAAATGAAAAA
Found at i:15024952 original size:19 final size:19
Alignment explanation
Indices: 15024930--15024966 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
15024920 AGGGAAGAAG
* *
15024930 AAAATGAAAACAAATAAAT
1 AAAAAGAAAAAAAATAAAT
15024949 AAAAAGAAAAAAAATAAA
1 AAAAAGAAAAAAAATAAA
15024967 AGCATAGGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.81, C:0.03, G:0.05, T:0.11
Consensus pattern (19 bp):
AAAAAGAAAAAAAATAAAT
Found at i:15026156 original size:17 final size:18
Alignment explanation
Indices: 15026134--15026179 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
15026124 TTAATTACTG
15026134 TCATATTTAAAATA-AAA
1 TCATATTTAAAATATAAA
*
15026151 TCATATTTATATATATAAA
1 TCATATTTA-AAATATAAA
*
15026170 TTATATTTAA
1 TCATATTTAA
15026180 TTAATTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 9 0.36
18 5 0.20
19 11 0.44
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (18 bp):
TCATATTTAAAATATAAA
Found at i:15049357 original size:3 final size:3
Alignment explanation
Indices: 15049351--15049375 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
15049341 GATGATGATG
15049351 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
15049376 CCTAAAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:15050736 original size:50 final size:50
Alignment explanation
Indices: 15050676--15050776 Score: 159
Period size: 50 Copynumber: 2.0 Consensus size: 50
15050666 CTAATCTTTA
* *
15050676 AGTCAGTATTC-ATACAAATCCTACCTAAGATGAATTCTAAAACCAAATTT
1 AGTCAATATTCGA-ACAAATCCTACCTAAGATGAACTCTAAAACCAAATTT
*
15050726 AGTCAATATTCGAACAAATCCTACCTAAGATGAACTCTAAAACCGAATTT
1 AGTCAATATTCGAACAAATCCTACCTAAGATGAACTCTAAAACCAAATTT
15050776 A
1 A
15050777 ACAACTATCA
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 46 0.98
51 1 0.02
ACGTcount: A:0.43, C:0.21, G:0.09, T:0.28
Consensus pattern (50 bp):
AGTCAATATTCGAACAAATCCTACCTAAGATGAACTCTAAAACCAAATTT
Found at i:15062002 original size:89 final size:90
Alignment explanation
Indices: 15061844--15062074 Score: 284
Period size: 89 Copynumber: 2.6 Consensus size: 90
15061834 CGTCTGATTT
* ** * * * * * * *
15061844 ATGATGCCATAGCGCCTTTTAGATATGCTCTTACTCGTTAGAATCGTGATGCCATAACGTCTTTT
1 ATGATGCCATAACATCTTTCAGCTATGGTCTTACTCGTTAAAATCATGATGCCACAACGTCTTTC
*
15061909 AGCTATGGTCTTACTTGTTAAAATC
66 AGCTATGGTCTTACTCGTTAAAATC
* *
15061934 GTGATGCTATAACATCTTTCAGCTATGGTCTTACT-GTTAAAATCATGATGCCACAACGTCTTTC
1 ATGATGCCATAACATCTTTCAGCTATGGTCTTACTCGTTAAAATCATGATGCCACAACGTCTTTC
* *
15061998 AGCTATGGTCTTACTCGTTTAAATT
66 AGCTATGGTCTTACTCGTTAAAATC
* ** *
15062023 ATGCTGCCATAATGTCTTTCAGCTATGGTCTTAATCGTTAAAATCATGATGC
1 ATGATGCCATAACATCTTTCAGCTATGGTCTTACTCGTTAAAATCATGATGC
15062075 TATAAAACCT
Statistics
Matches: 119, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
89 76 0.64
90 43 0.36
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.38
Consensus pattern (90 bp):
ATGATGCCATAACATCTTTCAGCTATGGTCTTACTCGTTAAAATCATGATGCCACAACGTCTTTC
AGCTATGGTCTTACTCGTTAAAATC
Found at i:15062047 original size:134 final size:134
Alignment explanation
Indices: 15061844--15062101 Score: 338
Period size: 134 Copynumber: 1.9 Consensus size: 134
15061834 CGTCTGATTT
* * * * *
15061844 ATGATGCCATAGCGCCTTTTAGATATGCTCTTACTCGTTAGAATCGTGATGCCATAACGTCTTTT
1 ATGATGCCACAACGCCTTTCAGATATGCTCTTACTCGTTAGAATCATGATGCCATAACGTCTTTC
* * * * *
15061909 AGCTATGGTCTTACTTGTTAAAATCGTGATGCTATAACATCTTTCAGCTATGGTCTTACTGTTAA
66 AGCTATGGTCTTAATCGTTAAAATCATGATGCTATAAAACCTTTCAGCTATGGTCTTACTGTTAA
15061974 AATC
131 AATC
* * * * * *
15061978 ATGATGCCACAACGTCTTTCAGCTATGGTCTTACTCGTTTA-AATTATGCTGCCATAATGTCTTT
1 ATGATGCCACAACGCCTTTCAGATATGCTCTTACTCG-TTAGAATCATGATGCCATAACGTCTTT
* *
15062042 CAGCTATGGTCTTAATCGTTAAAATCATGATGCTATAAAACCTTTCGGCTGTGGTCTTAC
65 CAGCTATGGTCTTAATCGTTAAAATCATGATGCTATAAAACCTTTCAGCTATGGTCTTAC
15062102 ACGTTTCCAC
Statistics
Matches: 105, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
134 102 0.97
135 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (134 bp):
ATGATGCCACAACGCCTTTCAGATATGCTCTTACTCGTTAGAATCATGATGCCATAACGTCTTTC
AGCTATGGTCTTAATCGTTAAAATCATGATGCTATAAAACCTTTCAGCTATGGTCTTACTGTTAA
AATC
Found at i:15062087 original size:45 final size:45
Alignment explanation
Indices: 15061844--15062106 Score: 294
Period size: 45 Copynumber: 5.9 Consensus size: 45
15061834 CGTCTGATTT
* * * * * *
15061844 ATGATGCCATAGCGCCTTTTAGATATGCTCTTACTCGTTAGAATC
1 ATGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAATC
* * *
15061889 GTGATGCCATAACGTCTTTTAGCTATGGTCTTACTTGTTAAAATC
1 ATGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAATC
* * *
15061934 GTGATGCTATAACATCTTTCAGCTATGGTCTTACT-GTTAAAATC
1 ATGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAATC
* * *
15061978 ATGATGCCACAACGTCTTTCAGCTATGGTCTTACTCGTTTAAATT
1 ATGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAATC
* * *
15062023 ATGCTGCCATAATGTCTTTCAGCTATGGTCTTAATCGTTAAAATC
1 ATGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAATC
* *** * * *
15062068 ATGATGCTATAAAACCTTTCGGCTGTGGTCTTACACGTT
1 ATGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTT
15062107 TCCACTATAA
Statistics
Matches: 186, Mismatches: 31, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
44 40 0.22
45 146 0.78
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (45 bp):
ATGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAAAATC
Found at i:15062121 original size:90 final size:89
Alignment explanation
Indices: 15061948--15062138 Score: 220
Period size: 90 Copynumber: 2.1 Consensus size: 89
15061938 TGCTATAACA
* *** *
15061948 TCTTTCAGCTATGGTCTTACTGTTAAAATCATGATGCCACAACGTCTTTCAGCTATGGTCTTACT
1 TCTTTCAGCTATGGTCTTAATGTTAAAATCATGATGCCACAAAACCTTTCAGCTATGGTCTTACA
* **
15062013 CGTTTAAATTATGCTGCCATAATG
66 CGTTTAAACTATAATGCCATAATG
* * * *
15062037 TCTTTCAGCTATGGTCTTAATCGTTAAAATCATGATGCTATAAAACCTTTCGGCTGTGGTCTTAC
1 TCTTTCAGCTATGGTCTTAAT-GTTAAAATCATGATGCCACAAAACCTTTCAGCTATGGTCTTAC
** * *
15062102 ACGTTTCCACTATAATGCCATAGTT
65 ACGTTTAAACTATAATGCCATAATG
*
15062127 TCTTTCAACTAT
1 TCTTTCAGCTAT
15062139 AGTTTTATTC
Statistics
Matches: 84, Mismatches: 17, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
89 20 0.24
90 64 0.76
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (89 bp):
TCTTTCAGCTATGGTCTTAATGTTAAAATCATGATGCCACAAAACCTTTCAGCTATGGTCTTACA
CGTTTAAACTATAATGCCATAATG
Found at i:15066867 original size:40 final size:40
Alignment explanation
Indices: 15066769--15066938 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 40
15066759 TCCTCGTTCA
* * ** *
15066769 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
15066808 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
*
15066848 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
* * ** * *
15066888 AATGCCTTCGGGACTTAACCCGGTTTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
*
15066928 AAGGCCTTCGG
1 AATGCCTTCGG
15066939 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 34 0.29
40 84 0.71
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
Found at i:15066991 original size:120 final size:119
Alignment explanation
Indices: 15066769--15066991 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 119
15066759 TCCTCGTTCA
* * *
15066769 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGTTTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
15066834 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * **
15066888 AATGCCTTCGGGACTTAACCCGGTTTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAACCCGGTTTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* *
15066952 TATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
15066992 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
119 38 0.44
120 43 0.49
121 6 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGTTTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:15067000 original size:41 final size:41
Alignment explanation
Indices: 15066923--15067000 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
15066913 TTAGTATCTC
* * *
15066923 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
15066964 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
15067001 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:15088742 original size:38 final size:38
Alignment explanation
Indices: 15088691--15088763 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
15088681 AATACAGCTT
15088691 CTCTTTCACTCCTCCTAACTCAAATAGGTGCTCAAACC
1 CTCTTTCACTCCTCCTAACTCAAATAGGTGCTCAAACC
* *
15088729 CTCTTTCCCTCCTCCTCACTCAAATAGGTGCTCAA
1 CTCTTTCACTCCTCCTAACTCAAATAGGTGCTCAA
15088764 CCCGGTACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.23, C:0.38, G:0.08, T:0.30
Consensus pattern (38 bp):
CTCTTTCACTCCTCCTAACTCAAATAGGTGCTCAAACC
Found at i:15097967 original size:20 final size:20
Alignment explanation
Indices: 15097919--15097970 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
15097909 AGAAAAAGCT
* *
15097919 TTTACCAAAATATCTAACGA
1 TTTACCAATATTTCTAACGA
*
15097939 TTTACCAATATTTCTAAGGA
1 TTTACCAATATTTCTAACGA
*
15097959 TTTATCAATATT
1 TTTACCAATATT
15097971 GACTTTACCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.40
Consensus pattern (20 bp):
TTTACCAATATTTCTAACGA
Found at i:15108340 original size:19 final size:19
Alignment explanation
Indices: 15108285--15108391 Score: 88
Period size: 19 Copynumber: 5.6 Consensus size: 19
15108275 TGCTTATACA
*
15108285 CTAGGATACACTTCGTGTG
1 CTAGGATGCACTTCGTGTG
* * * *
15108304 TTGGGATGCATTTTGTGTG
1 CTAGGATGCACTTCGTGTG
*
15108323 ATAGGATGCACTTCGTGTG
1 CTAGGATGCACTTCGTGTG
** * **
15108342 CTAAAATGCACTTTGTACG
1 CTAGGATGCACTTCGTGTG
*
15108361 CTAGGATGCACTTCATGTG
1 CTAGGATGCACTTCGTGTG
* *
15108380 CCAGTATGCACT
1 CTAGGATGCACT
15108392 ATCTGCGTCA
Statistics
Matches: 65, Mismatches: 23, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
19 65 1.00
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (19 bp):
CTAGGATGCACTTCGTGTG
Found at i:15108351 original size:38 final size:38
Alignment explanation
Indices: 15108286--15108380 Score: 100
Period size: 38 Copynumber: 2.5 Consensus size: 38
15108276 GCTTATACAC
* * *** * **
15108286 TAGGATACACTTCGTGTGTTGGGATGCATTTTGTGTGA
1 TAGGATGCACTTCGTGTGCTAAAATGCACTTTGTACGA
*
15108324 TAGGATGCACTTCGTGTGCTAAAATGCACTTTGTACGC
1 TAGGATGCACTTCGTGTGCTAAAATGCACTTTGTACGA
*
15108362 TAGGATGCACTTCATGTGC
1 TAGGATGCACTTCGTGTGC
15108381 CAGTATGCAC
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (38 bp):
TAGGATGCACTTCGTGTGCTAAAATGCACTTTGTACGA
Found at i:15116514 original size:6 final size:6
Alignment explanation
Indices: 15116503--15116536 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
15116493 GCAAGTTTAT
* *
15116503 ATTTTC ATTTTC ATTTCC ATTTCC ATTTCC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
15116537 TTGAAAACCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.24, G:0.00, T:0.59
Consensus pattern (6 bp):
ATTTCC
Found at i:15119692 original size:24 final size:25
Alignment explanation
Indices: 15119665--15119755 Score: 82
Period size: 24 Copynumber: 3.8 Consensus size: 25
15119655 TCCTCTCTCA
15119665 AGCCATATAAC-GGAAGCTCATGTG
1 AGCCATATAACGGGAAGCTCATGTG
* ** **
15119689 AGCCATGTAACAAGAAGCTCATAAG
1 AGCCATATAACGGGAAGCTCATGTG
* *
15119714 AGCCACA-ATCGGGAAGCTCATGCT-
1 AGCCATATAACGGGAAGCTCATG-TG
15119738 AGCCA-ATAACGGGAAGCT
1 AGCCATATAACGGGAAGCT
15119756 TCGAAGAGCC
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
23 1 0.02
24 36 0.69
25 15 0.29
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.16
Consensus pattern (25 bp):
AGCCATATAACGGGAAGCTCATGTG
Found at i:15125901 original size:32 final size:30
Alignment explanation
Indices: 15125863--15125933 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
15125853 TATATTGTCA
* *
15125863 AATTGATTTATATGTAGATATATACATTGCCG
1 AATTGATTTATATAT-G-TATATACATTACCG
* * *
15125895 AATTGATTTGTATATGTATGTATATTACCG
1 AATTGATTTATATATGTATATACATTACCG
15125925 AATTGATTT
1 AATTGATTT
15125934 GAATCTCATA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 20 0.59
31 1 0.03
32 13 0.38
ACGTcount: A:0.32, C:0.07, G:0.15, T:0.45
Consensus pattern (30 bp):
AATTGATTTATATATGTATATACATTACCG
Found at i:15125999 original size:48 final size:48
Alignment explanation
Indices: 15125929--15126113 Score: 241
Period size: 48 Copynumber: 3.9 Consensus size: 48
15125919 TTACCGAATT
* *
15125929 GATTTGA-ATCTCATATAAGACCATATCTGGGATATGGCATCGGCGTC
1 GATTTGAGATCTCGTATAAGACCATATCTGGGATATGGCATCGGCATC
* *
15125976 GATTTGAGATCTCGTATAAGACCATATCTGGGATATGGCATCAGAATC
1 GATTTGAGATCTCGTATAAGACCATATCTGGGATATGGCATCGGCATC
* * *
15126024 GATTTAAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATT
1 GATTTGAGATCTCGTATAAGACCATATCTGGGATATGGCATCGGCATC
* * * *
15126072 GCA--TGAGATTTTGTATAAGGCCATATTTGGGATATGGCATCG
1 G-ATTTGAGATCTCGTATAAGACCATATCTGGGATATGGCATCG
15126114 ATATGAGACT
Statistics
Matches: 121, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
47 40 0.33
48 80 0.66
49 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (48 bp):
GATTTGAGATCTCGTATAAGACCATATCTGGGATATGGCATCGGCATC
Found at i:15126127 original size:42 final size:42
Alignment explanation
Indices: 15126037--15126164 Score: 139
Period size: 42 Copynumber: 2.9 Consensus size: 42
15126027 TTAAGATCCC
* *
15126037 GTATAAGACCATATCTGGGATATGGCATCGGCATTGCATGAGATTTT
1 GTATAAGACCATATTTGGGATATGGCATC-G-A-T--ATGAGACTTT
*
15126084 GTATAAGGCCATATTTGGGATATGGCATCGATATGAGACTTT
1 GTATAAGACCATATTTGGGATATGGCATCGATATGAGACTTT
* * * *
15126126 GTGTAAGACCATAGTTGGGCTATTGACATCGATATGAGA
1 GTATAAGACCATATTTGGGATA-TGGCATCGATATGAGA
15126165 TTTCCATGTA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 27 0.38
43 15 0.21
44 1 0.01
45 1 0.01
46 1 0.01
47 27 0.38
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (42 bp):
GTATAAGACCATATTTGGGATATGGCATCGATATGAGACTTT
Found at i:15126196 original size:43 final size:42
Alignment explanation
Indices: 15126087--15126197 Score: 102
Period size: 43 Copynumber: 2.6 Consensus size: 42
15126077 AGATTTTGTA
* * * * *
15126087 TAAGGCCATATTTGGGATATGGCATCGATATGAGACTTTGTG
1 TAAGACCATAGTTGGGACATGACATCGATATGAGACTTTATG
15126129 TAAGACCATAGTTGGG-CTATTGACATCGATATGAGA-TTTCCATG
1 TAAGACCATAGTTGGGAC-A-TGACATCGATATGAGACTTT--ATG
*
15126173 TAAGACC-TTGTCTGGGACATGACAT
1 TAAGACCATAGT-TGGGACATGACAT
15126198 TTGTACGATA
Statistics
Matches: 57, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
42 18 0.32
43 24 0.42
44 14 0.25
45 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (42 bp):
TAAGACCATAGTTGGGACATGACATCGATATGAGACTTTATG
Found at i:15139996 original size:37 final size:37
Alignment explanation
Indices: 15139939--15140025 Score: 131
Period size: 37 Copynumber: 2.4 Consensus size: 37
15139929 TAGTGCCGAG
* * *
15139939 GCGTGTTATCGATTGGATTAGCTCTTATGAGCGTTTA
1 GCGTGTTATCGATTGCATTAGCTCTCATAAGCGTTTA
*
15139976 GCGTGTTATCGGTTGCATTAGCTCTCATAAGCGTTTA
1 GCGTGTTATCGATTGCATTAGCTCTCATAAGCGTTTA
15140013 GCGTGTT-TCGATT
1 GCGTGTTATCGATT
15140026 AGATTACTTG
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 5 0.11
37 40 0.89
ACGTcount: A:0.17, C:0.16, G:0.26, T:0.40
Consensus pattern (37 bp):
GCGTGTTATCGATTGCATTAGCTCTCATAAGCGTTTA
Found at i:15150674 original size:30 final size:30
Alignment explanation
Indices: 15150640--15150698 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
15150630 GTTCATCACT
*
15150640 ATTCAGTTATTGCCTACTTTATCTTGGCTA
1 ATTCAGGTATTGCCTACTTTATCTTGGCTA
15150670 ATTCAGGTATTGCCTACTTTATCTTGGCT
1 ATTCAGGTATTGCCTACTTTATCTTGGCT
15150699 TAAGACTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.46
Consensus pattern (30 bp):
ATTCAGGTATTGCCTACTTTATCTTGGCTA
Found at i:15151462 original size:17 final size:18
Alignment explanation
Indices: 15151437--15151481 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
15151427 TATAAGAATA
*
15151437 ATTATATTA-AGAATTTT
1 ATTAAATTATAGAATTTT
* *
15151454 ATTAAATTATATATTTTT
1 ATTAAATTATAGAATTTT
15151472 ATTAAATTAT
1 ATTAAATTAT
15151482 GTTTAATAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
ATTAAATTATAGAATTTT
Found at i:15151522 original size:119 final size:119
Alignment explanation
Indices: 15151385--15151612 Score: 404
Period size: 120 Copynumber: 1.9 Consensus size: 119
15151375 AAATAAAAAT
*
15151385 ATTATTTTTATAGTATTATGTATTATAATTTTAGTAAATTCATATAAGAATAATT-ATATTAAGA
1 ATTATTTTTATAGTATTATATATTATAATTTTAGTAAATTCATATAAGAATAATTAATATTAAGA
*
15151449 ATTTTATTAAATTATATATTTTTATTAAATTATGTTTAATAATAATTATTTTAA
66 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA
* *
15151503 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
1 ATTAT-TTTTATAGTATTATATATTATAATTTTAGTAAATTCATATAAGAATAATTAATATTAAG
15151568 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
65 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
15151613 NTCATTGAAC
Statistics
Matches: 104, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
118 5 0.05
119 47 0.45
120 52 0.50
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (119 bp):
ATTATTTTTATAGTATTATATATTATAATTTTAGTAAATTCATATAAGAATAATTAATATTAAGA
ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA
Found at i:15151585 original size:59 final size:57
Alignment explanation
Indices: 15151405--15151603 Score: 178
Period size: 56 Copynumber: 3.4 Consensus size: 57
15151395 TAGTATTATG
15151405 TATTATAATTTTAGTAAATTCATATAAGAATAATTATATTAAGAATTTTATTAAATTA
1 TATTAT-ATTTTAGTAAATTCATATAAGAATAATTATATTAAGAATTTTATTAAATTA
* * * * * *
15151463 TA-TAT-TTTTATTAAATT-ATGTTTAATAATAATTATTTTAAATTATATTTTA-TAGTATTATA
1 TATTATATTTTAGTAAATTCA--TATAAGAATAATTATATT-AA-GA-ATTTTATTA--AAT-TA
*
15151524 TATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTA
1 TATTAT-ATTTTAGTAAATTCATATAAGAATAATT-ATATTAAGAATTTTATTAAATTA
*
15151583 TA-TAT-TTTTATTAAATT-ATAT
1 TATTATATTTTAGTAAATTCATAT
15151604 TTAATAATAN
Statistics
Matches: 113, Mismatches: 14, Indels: 31
0.72 0.09 0.20
Matches are distributed among these distances:
54 1 0.01
55 15 0.13
56 26 0.23
57 5 0.04
58 8 0.07
59 10 0.09
60 4 0.04
61 10 0.09
62 6 0.05
63 12 0.11
64 15 0.13
65 1 0.01
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.52
Consensus pattern (57 bp):
TATTATATTTTAGTAAATTCATATAAGAATAATTATATTAAGAATTTTATTAAATTA
Found at i:15152666 original size:30 final size:30
Alignment explanation
Indices: 15152632--15152690 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
15152622 GTTCATCACT
*
15152632 ATTCAGTTATTGCCTACTTTATCTTGGCTA
1 ATTCAGGTATTGCCTACTTTATCTTGGCTA
15152662 ATTCAGGTATTGCCTACTTTATCTTGGCT
1 ATTCAGGTATTGCCTACTTTATCTTGGCT
15152691 TAAGACTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.46
Consensus pattern (30 bp):
ATTCAGGTATTGCCTACTTTATCTTGGCTA
Found at i:15153454 original size:17 final size:18
Alignment explanation
Indices: 15153429--15153473 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
15153419 TATAAGAATA
*
15153429 ATTATATTA-AGAATTTT
1 ATTAAATTATAGAATTTT
* *
15153446 ATTAAATTATATATTTTT
1 ATTAAATTATAGAATTTT
15153464 ATTAAATTAT
1 ATTAAATTAT
15153474 GTTTAATAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
ATTAAATTATAGAATTTT
Found at i:15153514 original size:119 final size:119
Alignment explanation
Indices: 15153377--15153593 Score: 391
Period size: 119 Copynumber: 1.8 Consensus size: 119
15153367 AAATAAAAAT
*
15153377 ATTATTTTTATAGTATTATGTATTATAATTTTAGTAAATTCATATAAGAATAATT-ATATTAAGA
1 ATTATTTTTATAGTATTATATATTATAATTTTAGTAAATTCATATAAGAATAATTAATATTAAGA
15153441 ATTTTATTAAATTATATATTTTTATTAAATTATGTTTAATAATAATTATTTTAA
66 ATTTTATTAAATTATATATTTTTATTAAATTATGTTTAATAATAATTATTTTAA
* *
15153495 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
1 ATTAT-TTTTATAGTATTATATATTATAATTTTAGTAAATTCATATAAGAATAATTAATATTAAG
15153560 AATTTTATTAAATTATATATTTTTATTAAATTAT
65 AATTTTATTAAATTATATATTTTTATTAAATTAT
15153594 ATTTTATAGT
Statistics
Matches: 94, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
118 5 0.05
119 47 0.50
120 42 0.45
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (119 bp):
ATTATTTTTATAGTATTATATATTATAATTTTAGTAAATTCATATAAGAATAATTAATATTAAGA
ATTTTATTAAATTATATATTTTTATTAAATTATGTTTAATAATAATTATTTTAA
Found at i:15153600 original size:94 final size:93
Alignment explanation
Indices: 15153491--15153783 Score: 411
Period size: 94 Copynumber: 3.1 Consensus size: 93
15153481 AATAATTATT
*
15153491 TTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATAT
1 TTAAATTATATTTTATAGTATTATACATTA-GATTTTAGTAAATTCATATAAGAATATTTAATAT
15153556 TAAGAATTTTATTAAATTATATATTTTTA
65 TAAGAATTTTATTAAATTATATATTTTTA
15153585 TTAAATTATATTTTATAGTATTATACATTAAGATTTTAGTAAATTCATATAAGAATAATTATATA
1 TTAAATTATATTTTATAGTATTATACATT-AGATTTTAGTAAATTCATATAAGAAT-ATT-TA-A
* * * * *
15153650 TTTTTATTA-AATTATATTTAATAATA-ATTATT-
62 -TATTA--AGAATTTTATTAAATTATATATTTTTA
15153682 TTAAATTATATTTTATAGTA-T-TACA-TA-ATTTTAGTAAATTCATATAAGAATATTTAATATT
1 TTAAATTATATTTTATAGTATTATACATTAGATTTTAGTAAATTCATATAAGAATATTTAATATT
15153743 AAGAATTTTATTAAATTATATATTTTTA
66 AAGAATTTTATTAAATTATATATTTTTA
15153771 TTAAATTATATTT
1 TTAAATTATATTT
15153784 AATAATAATT
Statistics
Matches: 178, Mismatches: 11, Indels: 25
0.83 0.05 0.12
Matches are distributed among these distances:
86 1 0.01
87 14 0.08
88 9 0.05
89 14 0.08
90 2 0.01
91 3 0.02
92 24 0.13
93 1 0.01
94 54 0.30
95 8 0.04
96 3 0.02
97 21 0.12
98 9 0.05
99 14 0.08
100 1 0.01
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (93 bp):
TTAAATTATATTTTATAGTATTATACATTAGATTTTAGTAAATTCATATAAGAATATTTAATATT
AAGAATTTTATTAAATTATATATTTTTA
Found at i:15153607 original size:38 final size:37
Alignment explanation
Indices: 15153565--15153668 Score: 96
Period size: 38 Copynumber: 2.9 Consensus size: 37
15153555 TTAAGAATTT
15153565 TATTAAATTATATATTTTTATTAAATTATATTTTATAG
1 TATTAAATTATATATTTTTATTAAATTATATTTTA-AG
* *
15153603 TATTATACATTA-AGA-TTTTAGTAAATTCATA---TAAG
1 TATTA-A-ATTATATATTTTTATTAAATT-ATATTTTAAG
*
15153638 -AAT-AATTATATATTTTTATTAAATTATATTT
1 TATTAAATTATATATTTTTATTAAATTATATTT
15153669 AATAATAATT
Statistics
Matches: 53, Mismatches: 5, Indels: 19
0.69 0.06 0.25
Matches are distributed among these distances:
31 4 0.08
32 6 0.11
33 11 0.21
34 2 0.04
35 2 0.04
36 2 0.04
38 16 0.30
39 6 0.11
40 4 0.08
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (37 bp):
TATTAAATTATATATTTTTATTAAATTATATTTTAAG
Found at i:15153752 original size:97 final size:97
Alignment explanation
Indices: 15153450--15153763 Score: 380
Period size: 94 Copynumber: 3.3 Consensus size: 97
15153440 AATTTTATTA
* *
15153450 AATTATATATTTTTATTAAATTATGTTTAATAATAATTATTTTAAATTATATTTTATAGTATTAT
1 AATTATATAATTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTAT
* *
15153515 ATATTATGATTTTAGTAAATTCATATAAGAAT
66 ACATTAAGATTTTAGTAAATTCATATAAGAAT
* * * * *
15153547 -A-T-T-TAATATTA--AGAATTTTATTAAATTATATATTTTTATTAAATTATATTTTATAGTAT
1 AATTATATAATTTTATTA-AATTATATTTAATAATA-ATTATT-TTAAATTATATTTTATAGTAT
15153606 TATACATTAAGATTTTAGTAAATTCATATAAGAAT
63 TATACATTAAGATTTTAGTAAATTCATATAAGAAT
*
15153641 AATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA-T-T
1 AATTATATAATTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTAT
15153704 ACA-T-A-ATTTTAGTAAATTCATATAAGAAT
66 ACATTAAGATTTTAGTAAATTCATATAAGAAT
*
15153733 ATTTAATATTAAGAATTTTATTAAATTATAT
1 AATT-ATA-T---AATTTTATTAAATTATAT
15153764 ATTTTTATTA
Statistics
Matches: 186, Mismatches: 17, Indels: 28
0.81 0.07 0.12
Matches are distributed among these distances:
91 1 0.01
92 40 0.22
93 15 0.08
94 57 0.31
95 6 0.03
96 3 0.02
97 38 0.20
98 11 0.06
99 14 0.08
100 1 0.01
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (97 bp):
AATTATATAATTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTAT
ACATTAAGATTTTAGTAAATTCATATAAGAAT
Found at i:15154029 original size:45 final size:44
Alignment explanation
Indices: 15153940--15154032 Score: 118
Period size: 44 Copynumber: 2.1 Consensus size: 44
15153930 ATTACAACAT
*
15153940 CATTCCATTCAACCAAACACAAGAATACTATTATAGTTCTATTC
1 CATTCCATTCAACCAAACACAAGAATACTATTATAGCTCTATTC
* *
15153984 CATTCCATTCAACCAAACA-ATTGAATTACTATTA-CGCCTCTATTC
1 CATTCCATTCAACCAAACACA-AGAA-TACTATTATAG-CTCTATTC
15154029 CATT
1 CATT
15154033 ACAGCGAACC
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
43 1 0.02
44 23 0.53
45 19 0.44
ACGTcount: A:0.35, C:0.27, G:0.04, T:0.33
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAAGAATACTATTATAGCTCTATTC
Found at i:15172503 original size:20 final size:20
Alignment explanation
Indices: 15172462--15172505 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
15172452 CATAATTTTG
* *
15172462 CTTACTTTCCATTCGATTTA
1 CTTACTTTACATTCGATCTA
15172482 CTTACTTTACATTTC-ATCTA
1 CTTACTTTACA-TTCGATCTA
15172502 CTTA
1 CTTA
15172506 ACATAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.23, C:0.25, G:0.02, T:0.50
Consensus pattern (20 bp):
CTTACTTTACATTCGATCTA
Found at i:15173244 original size:20 final size:20
Alignment explanation
Indices: 15173196--15173520 Score: 145
Period size: 20 Copynumber: 16.3 Consensus size: 20
15173186 AGATGCATAA
15173196 CAGGGGCACCAAAGTGCAAT
1 CAGGGGCACCAAAGTGCAAT
** * * *
15173216 CAGAAGCACGAATGTGCGAT
1 CAGGGGCACCAAAGTGCAAT
* *
15173236 CAGGGGCACCGAAGTGCAAA
1 CAGGGGCACCAAAGTGCAAT
* * * *
15173256 CATGGGCA-TAGATGTGCATT
1 CAGGGGCACCA-AAGTGCAAT
* ** ** *
15173276 TAGGGGTGCCAAAGTATAAA
1 CAGGGGCACCAAAGTGCAAT
**
15173296 CAGGGGCACGTAAGTGCAAT
1 CAGGGGCACCAAAGTGCAAT
* * * * *
15173316 CAGCGGTACCGAAGTACAAA
1 CAGGGGCACCAAAGTGCAAT
***
15173336 CAGGGGCATGTAAGTGCAAT
1 CAGGGGCACCAAAGTGCAAT
* * * **
15173356 CAGTGGTACCGAAGTAAAAT
1 CAGGGGCACCAAAGTGCAAT
*
15173376 -AAGGGCA-CATAAGTGCAAT
1 CAGGGGCACCA-AAGTGCAAT
* * *
15173395 TAGGGGTACCAAAGTACAAAT
1 CAGGGGCACCAAAGTGC-AAT
**
15173416 -AGGGGCACGTAAGTGCAAT
1 CAGGGGCACCAAAGTGCAAT
* * *
15173435 CAGGGGTACCAAAGTACAAA
1 CAGGGGCACCAAAGTGCAAT
* **
15173455 CAAGGGCACGTAAGTGCAAT
1 CAGGGGCACCAAAGTGCAAT
* * * *
15173475 CAGGGGTACCGAAGTACAAA
1 CAGGGGCACCAAAGTGCAAT
**
15173495 CAGGGGCACGTAAGTGCAAT
1 CAGGGGCACCAAAGTGCAAT
15173515 CAGGGG
1 CAGGGG
15173521 TAGTGAAGTA
Statistics
Matches: 207, Mismatches: 91, Indels: 14
0.66 0.29 0.04
Matches are distributed among these distances:
18 1 0.00
19 14 0.07
20 186 0.90
21 6 0.03
ACGTcount: A:0.36, C:0.18, G:0.31, T:0.15
Consensus pattern (20 bp):
CAGGGGCACCAAAGTGCAAT
Found at i:15173399 original size:19 final size:20
Alignment explanation
Indices: 15173378--15173554 Score: 90
Period size: 20 Copynumber: 8.8 Consensus size: 20
15173368 AGTAAAATAA
15173378 GGGCACATAAGTGCAATTAG
1 GGGCACATAAGTGCAATTAG
* * *
15173398 GGGTACCA-AAGTACAAATAG
1 GGGCA-CATAAGTGCAATTAG
* *
15173418 GGGCACGTAAGTGCAATCAG
1 GGGCACATAAGTGCAATTAG
* * ** *
15173438 GGGTACCA-AAGTACAAACAA
1 GGGCA-CATAAGTGCAATTAG
* *
15173458 GGGCACGTAAGTGCAATCAG
1 GGGCACATAAGTGCAATTAG
* ** * **
15173478 GGGTACCGAAGTACAAACAG
1 GGGCACATAAGTGCAATTAG
* *
15173498 GGGCACGTAAGTGCAATCAG
1 GGGCACATAAGTGCAATTAG
* * * *
15173518 GGGTA-GTGAAGTACAAATAG
1 GGGCACAT-AAGTGCAATTAG
15173538 GGGCACATAAGTGCAAT
1 GGGCACATAAGTGCAAT
15173555 CAGGAGTACC
Statistics
Matches: 115, Mismatches: 36, Indels: 12
0.71 0.22 0.07
Matches are distributed among these distances:
19 4 0.03
20 107 0.93
21 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.31, T:0.15
Consensus pattern (20 bp):
GGGCACATAAGTGCAATTAG
Found at i:15173596 original size:40 final size:40
Alignment explanation
Indices: 15173221--15173583 Score: 437
Period size: 40 Copynumber: 9.1 Consensus size: 40
15173211 GCAATCAGAA
* * * *
15173221 GCACG-AATGTGCGATCAGGGGCACCGAAGTGCAAACATGG
1 GCACGTAA-GTGCAATCAGGGGTACCGAAGTACAAACAGGG
* * * * *
15173261 GCA--TAGATGTGCATTTAGGGGTGCCAAAGTATAAACAGGG
1 GCACGTA-A-GTGCAATCAGGGGTACCGAAGTACAAACAGGG
*
15173301 GCACGTAAGTGCAATCAGCGGTACCGAAGTACAAACAGGG
1 GCACGTAAGTGCAATCAGGGGTACCGAAGTACAAACAGGG
* * * *
15173341 GCATGTAAGTGCAATCAGTGGTACCGAAGTA-AAATAAGG
1 GCACGTAAGTGCAATCAGGGGTACCGAAGTACAAACAGGG
* * * *
15173380 GCACATAAGTGCAATTAGGGGTACCAAAGTACAAATAGGG
1 GCACGTAAGTGCAATCAGGGGTACCGAAGTACAAACAGGG
* *
15173420 GCACGTAAGTGCAATCAGGGGTACCAAAGTACAAACAAGG
1 GCACGTAAGTGCAATCAGGGGTACCGAAGTACAAACAGGG
15173460 GCACGTAAGTGCAATCAGGGGTACCGAAGTACAAACAGGG
1 GCACGTAAGTGCAATCAGGGGTACCGAAGTACAAACAGGG
** *
15173500 GCACGTAAGTGCAATCAGGGGTAGTGAAGTACAAATAGGG
1 GCACGTAAGTGCAATCAGGGGTACCGAAGTACAAACAGGG
* * *
15173540 GCACATAAGTGCAATCAGGAGTACCGAAGTACAAACATGG
1 GCACGTAAGTGCAATCAGGGGTACCGAAGTACAAACAGGG
15173580 GCAC
1 GCAC
15173584 ATAACTGTAA
Statistics
Matches: 278, Mismatches: 40, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
39 33 0.12
40 242 0.87
41 1 0.00
42 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.30, T:0.16
Consensus pattern (40 bp):
GCACGTAAGTGCAATCAGGGGTACCGAAGTACAAACAGGG
Found at i:15178080 original size:52 final size:52
Alignment explanation
Indices: 15178002--15178145 Score: 234
Period size: 52 Copynumber: 2.8 Consensus size: 52
15177992 ACACTAAACC
* * * *
15178002 CTAAGAAATTAATTTTTTATGGGTTAACTTATACATAGTTACTTTAATTTTT
1 CTAAGAAATTAATTTTTTATGGGTTAACTTATACACAATTAATTTAAATTTT
15178054 CTAAGAAATTAATTTTTTATGGGTTAACTTATACACAATTAATTTAAATTTT
1 CTAAGAAATTAATTTTTTATGGGTTAACTTATACACAATTAATTTAAATTTT
* *
15178106 CTAAGAAATTATTTTTTTATGGGTTACCTTATACACAATT
1 CTAAGAAATTAATTTTTTATGGGTTAACTTATACACAATT
15178146 TCTAAGTTCA
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 86 1.00
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (52 bp):
CTAAGAAATTAATTTTTTATGGGTTAACTTATACACAATTAATTTAAATTTT
Found at i:15180128 original size:25 final size:25
Alignment explanation
Indices: 15180100--15180148 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
15180090 GCTTGCGGCA
* *
15180100 GTTTGGGTAGCTAAGGTGTGTGGCG
1 GTTTGGGTAGATAAAGTGTGTGGCG
*
15180125 GTTTGGGTGGATAAAGTGTGTGGC
1 GTTTGGGTAGATAAAGTGTGTGGC
15180149 TTGCAGCGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.14, C:0.06, G:0.47, T:0.33
Consensus pattern (25 bp):
GTTTGGGTAGATAAAGTGTGTGGCG
Found at i:15188511 original size:54 final size:55
Alignment explanation
Indices: 15188440--15188555 Score: 132
Period size: 54 Copynumber: 2.1 Consensus size: 55
15188430 GAGACACATA
* * *
15188440 CCCGTGTCTCAAGCCATGTAAC-CT-TCGAACTAGGGACACACGGCCGTGTCTC-AG
1 CCCGTGTCTCAACCCATGTAACTCTCT-GAA-TAGGGACACACGACCGTGTCACAAG
* *
15188494 CCCGTGTCCTC-ACCCATGTAACTCTCTGAATAGGGTCATACGACCGTGTCACAAG
1 CCCGTGT-CTCAACCCATGTAACTCTCTGAATAGGGACACACGACCGTGTCACAAG
15188549 CCCGTGT
1 CCCGTGT
15188556 GCTAGGCCGT
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
54 35 0.66
55 17 0.32
56 1 0.02
ACGTcount: A:0.22, C:0.34, G:0.22, T:0.22
Consensus pattern (55 bp):
CCCGTGTCTCAACCCATGTAACTCTCTGAATAGGGACACACGACCGTGTCACAAG
Found at i:15195721 original size:26 final size:26
Alignment explanation
Indices: 15195685--15195736 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15195675 ATTTATAAAC
*
15195685 TTAATCAATTTTAAGCACGGGTGATT
1 TTAATCAATTTTAAGCACAGGTGATT
15195711 TTAATCAATTTTAAGCACAGGTGATT
1 TTAATCAATTTTAAGCACAGGTGATT
15195737 AGCTTGCTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (26 bp):
TTAATCAATTTTAAGCACAGGTGATT
Found at i:15201871 original size:19 final size:21
Alignment explanation
Indices: 15201847--15201885 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15201837 CACTGTTCAT
15201847 TTGGT-CA-AGTATCGATACC
1 TTGGTCCATAGTATCGATACC
*
15201866 TTGGTCCATAGTATTGATAC
1 TTGGTCCATAGTATCGATAC
15201886 TTTTATCCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 2 0.12
21 10 0.59
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.36
Consensus pattern (21 bp):
TTGGTCCATAGTATCGATACC
Found at i:15202433 original size:45 final size:40
Alignment explanation
Indices: 15202384--15202471 Score: 104
Period size: 40 Copynumber: 2.1 Consensus size: 40
15202374 CAACCAACTT
15202384 ATTCAACCATAATCACTTCATGACATTATATACCTCAGACATGCC
1 ATTCAACCAT-ATCACTTCA--A-A-TATATACCTCAGACATGCC
* * *
15202429 ATTCAAGCATTTCATTTCAAATATATACCTCAGACATGCC
1 ATTCAACCATATCACTTCAAATATATACCTCAGACATGCC
15202469 ATT
1 ATT
15202472 TACAAAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
40 22 0.55
41 1 0.03
42 1 0.03
44 7 0.17
45 9 0.22
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (40 bp):
ATTCAACCATATCACTTCAAATATATACCTCAGACATGCC
Found at i:15226078 original size:6 final size:6
Alignment explanation
Indices: 15226066--15226112 Score: 67
Period size: 6 Copynumber: 7.8 Consensus size: 6
15226056 GCAAATGAAT
* * *
15226066 CATTTC TATTTC TATTTC TATTTC CATTTC CATTTC CATTTC CATTT
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTT
15226113 TGGAAACCTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.17, C:0.26, G:0.00, T:0.57
Consensus pattern (6 bp):
CATTTC
Found at i:15226171 original size:27 final size:27
Alignment explanation
Indices: 15226141--15226196 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
15226131 TCCAAATGAT
15226141 TACATTTTTCCATTTTGGAAAAAAGCA
1 TACATTTTTCCATTTTGGAAAAAAGCA
*
15226168 TACATTTTTCCATTTTGGAAAAAGGCA
1 TACATTTTTCCATTTTGGAAAAAAGCA
15226195 TA
1 TA
15226197 ATCATTCCTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (27 bp):
TACATTTTTCCATTTTGGAAAAAAGCA
Found at i:15226204 original size:26 final size:27
Alignment explanation
Indices: 15226148--15226204 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
15226138 GATTACATTT
**
15226148 TTCCATTTTGGAAAAAAGCATACATTT
1 TTCCATTTTGGAAAAAAGCATACATCA
*
15226175 TTCCATTTTGGAAAAAGGCATA-ATCA
1 TTCCATTTTGGAAAAAAGCATACATCA
15226201 TTCC
1 TTCC
15226205 TGAATGTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (27 bp):
TTCCATTTTGGAAAAAAGCATACATCA
Found at i:15230193 original size:109 final size:109
Alignment explanation
Indices: 15230002--15230226 Score: 423
Period size: 109 Copynumber: 2.1 Consensus size: 109
15229992 TCAATAAGGT
15230002 GCATCTAAGGCCAAAGACTCATGTCACCTCTATGAGTTGTAGAAGGGAAAAAAACCAACTGTGAA
1 GCATCTAAGGCCAAAGACTCATGTCACCTCTATGAGTTGTAGAAGGGAAAAAAACCAACTGTGAA
* *
15230067 CTACTTTCATGTCTTTGGAAGTACCTATTTCAGTATGGTTGAAA
66 ATACTTTCATGTCTTTGGAAGTACCTATTTCAGTATGGCTGAAA
*
15230111 GCATCTAAGGCCAAAGACTCATGTCACCTCTATGAGTTGTAGAAGGGAAAAAAACCTACTGTGAA
1 GCATCTAAGGCCAAAGACTCATGTCACCTCTATGAGTTGTAGAAGGGAAAAAAACCAACTGTGAA
15230176 ATACTTTCATGTCTTTGGAAGTACCTATTTCAGTATGGCTGAAA
66 ATACTTTCATGTCTTTGGAAGTACCTATTTCAGTATGGCTGAAA
15230220 GCATCTA
1 GCATCTA
15230227 GGACACCTAT
Statistics
Matches: 113, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
109 113 1.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (109 bp):
GCATCTAAGGCCAAAGACTCATGTCACCTCTATGAGTTGTAGAAGGGAAAAAAACCAACTGTGAA
ATACTTTCATGTCTTTGGAAGTACCTATTTCAGTATGGCTGAAA
Found at i:15235081 original size:51 final size:51
Alignment explanation
Indices: 15234959--15235207 Score: 321
Period size: 51 Copynumber: 4.9 Consensus size: 51
15234949 AACTATTATC
* *
15234959 ATTCCATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCA-AACT
1 ATTCCATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATAACT
* * *
15235009 -TTCCAGTTCACGTAGTAGCCTGCATATAGTACTACACACATGACCATTAA-T
1 ATTCCA-TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-TAACT
* *
15235060 ATTCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCA-AACT
1 ATTCCATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATAACT
* * *
15235110 -TTCCAGTTCACGTAGTAGCCTGCATATAGTACTACACACATGACCATTAA-T
1 ATTCCA-TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-TAACT
*
15235161 ATTCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 ATTCCATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
15235208 CACTTTCACT
Statistics
Matches: 171, Mismatches: 19, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
49 11 0.06
50 73 0.43
51 75 0.44
52 12 0.07
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.27
Consensus pattern (51 bp):
ATTCCATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATAACT
Found at i:15235108 original size:101 final size:101
Alignment explanation
Indices: 15234959--15235203 Score: 472
Period size: 101 Copynumber: 2.4 Consensus size: 101
15234949 AACTATTATC
* *
15234959 ATTCCATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAACTTTCCAGTTCACGTAG
1 ATTCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAACTTTCCAGTTCACGTAG
15235024 TAGCCTGCATATAGTACTACACACATGACCATTAAT
66 TAGCCTGCATATAGTACTACACACATGACCATTAAT
15235060 ATTCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAACTTTCCAGTTCACGTAG
1 ATTCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAACTTTCCAGTTCACGTAG
15235125 TAGCCTGCATATAGTACTACACACATGACCATTAAT
66 TAGCCTGCATATAGTACTACACACATGACCATTAAT
15235161 ATTCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGA
1 ATTCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGA
15235204 CCATCACTTT
Statistics
Matches: 142, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 142 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.27
Consensus pattern (101 bp):
ATTCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAACTTTCCAGTTCACGTAG
TAGCCTGCATATAGTACTACACACATGACCATTAAT
Found at i:15235335 original size:10 final size:10
Alignment explanation
Indices: 15235320--15235344 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
15235310 AATCGGGAAA
15235320 TTTCTCATTT
1 TTTCTCATTT
15235330 TTTCTCATTT
1 TTTCTCATTT
15235340 TTTCT
1 TTTCT
15235345 TTTTCACTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTCTCATTT
Found at i:15236052 original size:9 final size:9
Alignment explanation
Indices: 15236038--15236064 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
15236028 TTAAAAATAT
15236038 CCTATTTCA
1 CCTATTTCA
15236047 CCTATTTCA
1 CCTATTTCA
15236056 CCTATTTCA
1 CCTATTTCA
15236065 TGTCCATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.33, G:0.00, T:0.44
Consensus pattern (9 bp):
CCTATTTCA
Found at i:15238737 original size:22 final size:23
Alignment explanation
Indices: 15238712--15238758 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
15238702 TCCTAAGCTC
15238712 AAAATTA-TCAGTTTTCACTT-TA
1 AAAATTAGTCA-TTTTCACTTCTA
*
15238734 AAAATTAGTCATTTTTACTTCTA
1 AAAATTAGTCATTTTCACTTCTA
15238757 AA
1 AA
15238759 CTTATAAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.45
Consensus pattern (23 bp):
AAAATTAGTCATTTTCACTTCTA
Found at i:15239084 original size:25 final size:23
Alignment explanation
Indices: 15239039--15239085 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 23
15239029 CTTTCTTTTA
*
15239039 TTTAATTAATTATATTTTATAAT
1 TTTAATTAATCATATTTTATAAT
15239062 TTTAATTATATCATAATTTTATAA
1 TTTAATTA-ATCAT-ATTTTATAA
15239086 AATTTATGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 8 0.38
24 4 0.19
25 9 0.43
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (23 bp):
TTTAATTAATCATATTTTATAAT
Found at i:15239167 original size:29 final size:29
Alignment explanation
Indices: 15239134--15239192 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
15239124 ATTAAAATAG
15239134 TTAGTTGTCATTTTAGAATTTTATTTAAT
1 TTAGTTGTCATTTTAGAATTTTATTTAAT
15239163 TTAGTTGTCATTTTAGAATTTTATTTAAT
1 TTAGTTGTCATTTTAGAATTTTATTTAAT
15239192 T
1 T
15239193 ACTGTTTAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.03, G:0.10, T:0.59
Consensus pattern (29 bp):
TTAGTTGTCATTTTAGAATTTTATTTAAT
Found at i:15251193 original size:38 final size:38
Alignment explanation
Indices: 15251151--15251276 Score: 114
Period size: 38 Copynumber: 3.2 Consensus size: 38
15251141 AACCTTAGTT
15251151 TTATTTCTATATTTTGCAAAAGAATTCAATTTAAATTA
1 TTATTTCTATATTTTGCAAAAGAATTCAATTTAAATTA
* * * *
15251189 TTATTTCTTATAGTAATTT-CAAAAGAGCTATAAACCTT-AGTT-
1 TTATTTC-TATA-T--TTTGCAAAAGA-AT-TCAA-TTTAAATTA
* *
15251231 TTATTTCTATATTTTGCAAAATAAATCAATTTAAATTA
1 TTATTTCTATATTTTGCAAAAGAATTCAATTTAAATTA
15251269 TTATTTCT
1 TTATTTCT
15251277 TATAGTAATT
Statistics
Matches: 68, Mismatches: 10, Indels: 20
0.69 0.10 0.20
Matches are distributed among these distances:
36 2 0.03
37 6 0.09
38 18 0.26
39 10 0.15
40 2 0.03
41 11 0.16
42 11 0.16
43 6 0.09
44 2 0.03
ACGTcount: A:0.37, C:0.10, G:0.06, T:0.48
Consensus pattern (38 bp):
TTATTTCTATATTTTGCAAAAGAATTCAATTTAAATTA
Found at i:15251316 original size:80 final size:80
Alignment explanation
Indices: 15251139--15251299 Score: 295
Period size: 80 Copynumber: 2.0 Consensus size: 80
15251129 ATTTATGAAT
*
15251139 TAAACCTTAGTTTTATTTCTATATTTTGCAAAAGAATTCAATTTAAATTATTATTTCTTATAGTA
1 TAAACCTTAGTTTTATTTCTATATTTTGCAAAAGAAATCAATTTAAATTATTATTTCTTATAGTA
15251204 ATTTCAAAAGAGCTA
66 ATTTCAAAAGAGCTA
*
15251219 TAAACCTTAGTTTTATTTCTATATTTTGCAAAATAAATCAATTTAAATTATTATTTCTTATAGTA
1 TAAACCTTAGTTTTATTTCTATATTTTGCAAAAGAAATCAATTTAAATTATTATTTCTTATAGTA
*
15251284 ATTTCAAGAGAGCTA
66 ATTTCAAAAGAGCTA
15251299 T
1 T
15251300 CTTTTTTATT
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 78 1.00
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.45
Consensus pattern (80 bp):
TAAACCTTAGTTTTATTTCTATATTTTGCAAAAGAAATCAATTTAAATTATTATTTCTTATAGTA
ATTTCAAAAGAGCTA
Found at i:15253619 original size:28 final size:28
Alignment explanation
Indices: 15253587--15253642 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
15253577 TTATCATACC
*
15253587 ATTTTTTAATATAACTACCATAATATAT
1 ATTTTTTAATAGAACTACCATAATATAT
**
15253615 ATTTTTTGGTAGAACTACCATAATATAT
1 ATTTTTTAATAGAACTACCATAATATAT
15253643 TTTAAAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (28 bp):
ATTTTTTAATAGAACTACCATAATATAT
Found at i:15254026 original size:18 final size:18
Alignment explanation
Indices: 15254005--15254040 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
15253995 CCAAATTTGT
15254005 ATACTGAAAATGGGGAGA
1 ATACTGAAAATGGGGAGA
* *
15254023 ATACTGTAAATTGGGAGA
1 ATACTGAAAATGGGGAGA
15254041 TTGAAAACAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.31, T:0.22
Consensus pattern (18 bp):
ATACTGAAAATGGGGAGA
Found at i:15254897 original size:9 final size:9
Alignment explanation
Indices: 15254885--15254912 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
15254875 TTTTCTTTTT
15254885 TTTTACTTC
1 TTTTACTTC
15254894 TTTTACTTC
1 TTTTACTTC
15254903 TTTTACTTC
1 TTTTACTTC
15254912 T
1 T
15254913 ATATACGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.21, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTACTTC
Found at i:15256473 original size:9 final size:9
Alignment explanation
Indices: 15256459--15256487 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
15256449 TAAATAATAT
15256459 ATTTTTAAA
1 ATTTTTAAA
15256468 ATTTTTAAA
1 ATTTTTAAA
15256477 ATTTTTAAA
1 ATTTTTAAA
15256486 AT
1 AT
15256488 ATATATTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (9 bp):
ATTTTTAAA
Found at i:15256492 original size:33 final size:35
Alignment explanation
Indices: 15256434--15256500 Score: 95
Period size: 33 Copynumber: 2.0 Consensus size: 35
15256424 TTACGTATTT
15256434 ATTTTTAAAAAATTTTAAATAATATATTT-TTAAA
1 ATTTTTAAAAAATTTTAAATAATATATTTGTTAAA
*
15256468 ATTTTT-AAAATTTTTAAA-ATATATATTTGTTAA
1 ATTTTTAAAAAATTTTAAATA-ATATATTTGTTAA
15256501 TTAAATGAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
32 1 0.03
33 19 0.63
34 10 0.33
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.52
Consensus pattern (35 bp):
ATTTTTAAAAAATTTTAAATAATATATTTGTTAAA
Found at i:15258919 original size:31 final size:32
Alignment explanation
Indices: 15258884--15258970 Score: 108
Period size: 30 Copynumber: 2.8 Consensus size: 32
15258874 TTAGGGCTCT
* *
15258884 AAAATTTTTAAAAAATCTCATTAAGCCTTT-C
1 AAAATTTTTAAAAATTCTCATTAAGCATTTCC
*
15258915 AAAATTTTTAAAAATTCTAATT-AG-ATTTCC
1 AAAATTTTTAAAAATTCTCATTAAGCATTTCC
* *
15258945 AAAATTTTTAGAAATTCCCATTAAGC
1 AAAATTTTTAAAAATTCTCATTAAGC
15258971 TCTTAAAAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
29 3 0.06
30 22 0.47
31 22 0.47
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.39
Consensus pattern (32 bp):
AAAATTTTTAAAAATTCTCATTAAGCATTTCC
Found at i:15258949 original size:61 final size:62
Alignment explanation
Indices: 15258839--15258970 Score: 149
Period size: 61 Copynumber: 2.1 Consensus size: 62
15258829 TGGAAATTTA
* ** * * * *
15258839 TCATTAAGCCTTTTAATTTTTTTTAATAATTTTAATTAGGGCTCTAAAATTTTTAAAAAATC
1 TCATTAAGCCTTTCAATAATTTTTAAAAATTCTAATTAGAGCTCCAAAATTTTTAAAAAATC
** * *
15258901 TCATTAAGCCTTTCAA-AATTTTTAAAAATTCTAATTAGATTTCCAAAATTTTTAGAAATTC
1 TCATTAAGCCTTTCAATAATTTTTAAAAATTCTAATTAGAGCTCCAAAATTTTTAAAAAATC
*
15258962 CCATTAAGC
1 TCATTAAGC
15258971 TCTTAAAAGT
Statistics
Matches: 58, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
61 43 0.74
62 15 0.26
ACGTcount: A:0.37, C:0.13, G:0.06, T:0.44
Consensus pattern (62 bp):
TCATTAAGCCTTTCAATAATTTTTAAAAATTCTAATTAGAGCTCCAAAATTTTTAAAAAATC
Found at i:15261856 original size:57 final size:59
Alignment explanation
Indices: 15261759--15261874 Score: 200
Period size: 58 Copynumber: 2.0 Consensus size: 59
15261749 CCTTTAAATT
15261759 CTTTCCTTTTTTGGTAGTCATCTAATTATTGAT-AATTTTTTCTGTTACTCAATTATAA
1 CTTTCCTTTTTTGGTAGTCATCTAATTATTGATAAATTTTTTCTGTTACTCAATTATAA
* *
15261817 CTTT-CTTTTTTGGTAGTCATCTAATTATTGGTAAATTTTTTCTGTTATTCAATTATAA
1 CTTTCCTTTTTTGGTAGTCATCTAATTATTGATAAATTTTTTCTGTTACTCAATTATAA
15261875 AGAAAGTTAC
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
57 27 0.49
58 28 0.51
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.54
Consensus pattern (59 bp):
CTTTCCTTTTTTGGTAGTCATCTAATTATTGATAAATTTTTTCTGTTACTCAATTATAA
Found at i:15265079 original size:21 final size:21
Alignment explanation
Indices: 15265037--15265080 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
15265027 AATTTACATT
* * **
15265037 ATTTTTTAAATTTATATCTAA
1 ATTTTTAAAATGTATAAATAA
15265058 ATTTTTAAAATGTATAAATAA
1 ATTTTTAAAATGTATAAATAA
15265079 AT
1 AT
15265081 AATAAAATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (21 bp):
ATTTTTAAAATGTATAAATAA
Found at i:15269000 original size:25 final size:25
Alignment explanation
Indices: 15268953--15269000 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
15268943 ATAAACAATT
* *
15268953 TAATATATTTTTATTATTTATATTA
1 TAATATATTTTAATTATTCATATTA
15268978 TAATATATATTTAATT-TTCATAT
1 TAATATAT-TTTAATTATTCATAT
15269001 AATATAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 14 0.70
26 6 0.30
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (25 bp):
TAATATATTTTAATTATTCATATTA
Found at i:15269028 original size:19 final size:19
Alignment explanation
Indices: 15269006--15269044 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
15268996 CATATAATAT
*
15269006 AAATTAAAAAATATATTAA
1 AAATTAAAAAATAAATTAA
15269025 AAATTAAAAAATAAATTAA
1 AAATTAAAAAATAAATTAA
15269044 A
1 A
15269045 TAGAGCTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (19 bp):
AAATTAAAAAATAAATTAA
Found at i:15272557 original size:41 final size:41
Alignment explanation
Indices: 15272512--15272589 Score: 129
Period size: 41 Copynumber: 1.9 Consensus size: 41
15272502 GTATTTATCA
*
15272512 TGTAAAACAGAAGTTGAATAATAAAATTCGTCAATTATGTG
1 TGTAAAACAGAAGTTAAATAATAAAATTCGTCAATTATGTG
* *
15272553 TGTAAAACAGAAGTTAAATAATAGAATTTGTCAATTA
1 TGTAAAACAGAAGTTAAATAATAAAATTCGTCAATTA
15272590 GGTTAGACAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.46, C:0.06, G:0.15, T:0.32
Consensus pattern (41 bp):
TGTAAAACAGAAGTTAAATAATAAAATTCGTCAATTATGTG
Done.