Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 52 of 205
Found at i:15563254 original size:18 final size:18
Alignment explanation
Indices: 15563194--15563254 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
15563184 AAAAGATATA
*
15563194 AAAATGTATGTATATTAT
1 AAAATGTATATATATTAT
*
15563212 AGAAAATGTATAAATATTAT
1 --AAAATGTATATATATTAT
* *
15563232 GAAATGTATATATACTAT
1 AAAATGTATATATATTAT
15563250 AAAAT
1 AAAAT
15563255 ACATATGAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
18 19 0.54
20 16 0.46
ACGTcount: A:0.51, C:0.02, G:0.10, T:0.38
Consensus pattern (18 bp):
AAAATGTATATATATTAT
Found at i:15566885 original size:16 final size:16
Alignment explanation
Indices: 15566850--15566895 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
15566840 TTAAACATAT
15566850 TTAAATTTA-TTA-TA
1 TTAAATTTATTTATTA
15566864 TT--ATTTATTTATTA
1 TTAAATTTATTTATTA
15566878 TTAAATTTATTT-TTA
1 TTAAATTTATTTATTA
15566893 TTA
1 TTA
15566896 TTAATTAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
12 5 0.18
13 3 0.11
14 6 0.21
15 6 0.21
16 8 0.29
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTAAATTTATTTATTA
Found at i:15566909 original size:21 final size:22
Alignment explanation
Indices: 15566860--15566915 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
15566850 TTAAATTTAT
15566860 TATATTATTTATTTATTATTAAA
1 TATATT-TTTATTTATTATTAAA
*
15566883 TTTATTTTTA-TTATTAATTAAA
1 TATATTTTTATTTATT-ATTAAA
15566905 -ATA-TTTTATTT
1 TATATTTTTATTT
15566916 TAGAAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 5 0.17
21 9 0.31
22 10 0.34
23 5 0.17
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
TATATTTTTATTTATTATTAAA
Found at i:15567044 original size:29 final size:29
Alignment explanation
Indices: 15566975--15567085 Score: 87
Period size: 31 Copynumber: 3.7 Consensus size: 29
15566965 ATCTCAAAAT
* *
15566975 TATACATAAACTTTGATTTAGTGTGCAATTG
1 TATACATGAACTTTAATTT-G-GTGCAATTG
* *
15567006 TATAAATGAACTTTAATTTGGTGCAATTA
1 TATACATGAACTTTAATTTGGTGCAATTG
* * * *
15567035 TATACCTGAAACTCTAATTGTGGTTCAAATG
1 TATACATG-AACTTTAATT-TGGTGCAATTG
* *
15567066 TATACTTTAAACTTTAATTT
1 TATAC-ATGAACTTTAATTT
15567086 TGATTTAATC
Statistics
Matches: 64, Mismatches: 13, Indels: 7
0.76 0.15 0.08
Matches are distributed among these distances:
29 14 0.22
30 11 0.17
31 38 0.59
32 1 0.02
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (29 bp):
TATACATGAACTTTAATTTGGTGCAATTG
Found at i:15572001 original size:912 final size:912
Alignment explanation
Indices: 15570866--15572690 Score: 3650
Period size: 912 Copynumber: 2.0 Consensus size: 912
15570856 TAACTATTCT
15570866 AATTTAAAGATCTTTGGGTGTCTTGCCTATGCTCCTATTAATAATGGAAAATTGGAATCGAGATC
1 AATTTAAAGATCTTTGGGTGTCTTGCCTATGCTCCTATTAATAATGGAAAATTGGAATCGAGATC
15570931 CATTAAATGTGTTTTTCTTGGTTATAAAATTGGTATAAAAGGGTATAAGTTATGGTGTCTTGAAA
66 CATTAAATGTGTTTTTCTTGGTTATAAAATTGGTATAAAAGGGTATAAGTTATGGTGTCTTGAAA
15570996 ATAGAAAAGTTGTGATTAGCAGAGATGTTGTTTTTGATGAAACTGCTATGCTACCTAACTTATCT
131 ATAGAAAAGTTGTGATTAGCAGAGATGTTGTTTTTGATGAAACTGCTATGCTACCTAACTTATCT
15571061 CTTAAAGACTCTTCCAATAAAGAAAATCAAAAGCAGGTGGAGCATCAGATTAATCCAGAATCTAC
196 CTTAAAGACTCTTCCAATAAAGAAAATCAAAAGCAGGTGGAGCATCAGATTAATCCAGAATCTAC
15571126 AACAGAGTCGACTCCTCAAGCCAGTATAAAAATTCAGAATAGAGTTGCTTCTTTACCACAATACT
261 AACAGAGTCGACTCCTCAAGCCAGTATAAAAATTCAGAATAGAGTTGCTTCTTTACCACAATACT
15571191 TTATCGCCAAAAACATAACTACAAGAGAAATTAAACCTCCAAAGAAGTATGTTGAGTCTGATCTA
326 TTATCGCCAAAAACATAACTACAAGAGAAATTAAACCTCCAAAGAAGTATGTTGAGTCTGATCTA
15571256 GTTGCTTATGCTTTAAATGTGACTGAAGATATAGATGCAAACCAAGAGTCATCTAATTGTTCTGA
391 GTTGCTTATGCTTTAAATGTGACTGAAGATATAGATGCAAACCAAGAGTCATCTAATTGTTCTGA
15571321 GGCGGTTAGCTGTGAAGATTCAGAAAAGTGGATGTTTGCTATGCAAGAGGAGATGGAATCACTTC
456 GGCGGTTAGCTGTGAAGATTCAGAAAAGTGGATGTTTGCTATGCAAGAGGAGATGGAATCACTTC
15571386 ACAAAAATGAAACATGGGATCTTGTAAAACTTCCTAAAGGTAAAAAAGTTATTCGTTGTAAATGG
521 ACAAAAATGAAACATGGGATCTTGTAAAACTTCCTAAAGGTAAAAAAGTTATTCGTTGTAAATGG
15571451 ATGTTTAAAAAGAAAGAAGAAAACTCCAGGAGTTGAAGACCCAGATATAAAAAAAGGCTTGTTGC
586 ATGTTTAAAAAGAAAGAAGAAAACTCCAGGAGTTGAAGACCCAGATATAAAAAAAGGCTTGTTGC
15571516 AAAGGGTTACAGTCAAATTCTAGGAGTGAACTTCACAGATGTGTTCTCCCCAATTGTAAAGCATA
651 AAAGGGTTACAGTCAAATTCTAGGAGTGAACTTCACAGATGTGTTCTCCCCAATTGTAAAGCATA
15571581 GTTCGATTTGAGCTTTGCTTGGTATTGTGGCCATACATGATTTGGAGCTTGAGTAGTTAGATATA
716 GTTCGATTTGAGCTTTGCTTGGTATTGTGGCCATACATGATTTGGAGCTTGAGTAGTTAGATATA
15571646 AAAACTGTATTTTTGCATGGAGAACTTGAGGAGGATATTTACATGCAACAACTAGAGGGTTTTAT
781 AAAACTGTATTTTTGCATGGAGAACTTGAGGAGGATATTTACATGCAACAACTAGAGGGTTTTAT
15571711 AGTATCAAAGAAAGAGGACTATGTTTGCTTGTTGAAAAAGTCCTTTTACGGTTTGAAACAGTTAC
846 AGTATCAAAGAAAGAGGACTATGTTTGCTTGTTGAAAAAGTCCTTTTACGGTTTGAAACAGTTAC
15571776 CA
911 CA
15571778 AATTTAAAGATCTTTGGGTGTCTTGCCTATGCTCCTATTAATAATGGAAAATTGGAATCGAGATC
1 AATTTAAAGATCTTTGGGTGTCTTGCCTATGCTCCTATTAATAATGGAAAATTGGAATCGAGATC
15571843 CATTAAATGTGTTTTTCTTGGTTATAAAATTGGTATAAAAGGGTATAAGTTATGGTGTCTTGAAA
66 CATTAAATGTGTTTTTCTTGGTTATAAAATTGGTATAAAAGGGTATAAGTTATGGTGTCTTGAAA
15571908 ATAGAAAAGTTGTGATTAGCAGAGATGTTGTTTTTGATGAAACTGCTATGCTACCTAACTTATCT
131 ATAGAAAAGTTGTGATTAGCAGAGATGTTGTTTTTGATGAAACTGCTATGCTACCTAACTTATCT
15571973 CTTAAAGACTCTTCCAATAAAGAAAATCAAAAGCAGGTGGAGCATCAGATTAATCCAGAATCTAC
196 CTTAAAGACTCTTCCAATAAAGAAAATCAAAAGCAGGTGGAGCATCAGATTAATCCAGAATCTAC
15572038 AACAGAGTCGACTCCTCAAGCCAGTATAAAAATTCAGAATAGAGTTGCTTCTTTACCACAATACT
261 AACAGAGTCGACTCCTCAAGCCAGTATAAAAATTCAGAATAGAGTTGCTTCTTTACCACAATACT
15572103 TTATCGCCAAAAACATAACTACAAGAGAAATTAAACCTCCAAAGAAGTATGTTGAGTCTGATCTA
326 TTATCGCCAAAAACATAACTACAAGAGAAATTAAACCTCCAAAGAAGTATGTTGAGTCTGATCTA
15572168 GTTGCTTATGCTTTAAATGTGACTGAAGATATAGATGCAAACCAAGAGTCATCTAATTGTTCTGA
391 GTTGCTTATGCTTTAAATGTGACTGAAGATATAGATGCAAACCAAGAGTCATCTAATTGTTCTGA
15572233 GGCGGTTAGCTGTGAAGATTCAGAAAAGTGGATGTTTGCTATGCAAGAGGAGATGGAATCACTTC
456 GGCGGTTAGCTGTGAAGATTCAGAAAAGTGGATGTTTGCTATGCAAGAGGAGATGGAATCACTTC
15572298 ACAAAAATGAAACATGGGATCTTGTAAAACTTCCTAAAGGTAAAAAAGTTATTCGTTGTAAATGG
521 ACAAAAATGAAACATGGGATCTTGTAAAACTTCCTAAAGGTAAAAAAGTTATTCGTTGTAAATGG
15572363 ATGTTTAAAAAGAAAGAAGAAAACTCCAGGAGTTGAAGACCCAGATATAAAAAAAGGCTTGTTGC
586 ATGTTTAAAAAGAAAGAAGAAAACTCCAGGAGTTGAAGACCCAGATATAAAAAAAGGCTTGTTGC
15572428 AAAGGGTTACAGTCAAATTCTAGGAGTGAACTTCACAGATGTGTTCTCCCCAATTGTAAAGCATA
651 AAAGGGTTACAGTCAAATTCTAGGAGTGAACTTCACAGATGTGTTCTCCCCAATTGTAAAGCATA
15572493 GTTCGATTTGAGCTTTGCTTGGTATTGTGGCCATACATGATTTGGAGCTTGAGTAGTTAGATATA
716 GTTCGATTTGAGCTTTGCTTGGTATTGTGGCCATACATGATTTGGAGCTTGAGTAGTTAGATATA
15572558 AAAACTGTATTTTTGCATGGAGAACTTGAGGAGGATATTTACATGCAACAACTAGAGGGTTTTAT
781 AAAACTGTATTTTTGCATGGAGAACTTGAGGAGGATATTTACATGCAACAACTAGAGGGTTTTAT
15572623 AGTATCAAAGAAAGAGGACTATGTTTGCTTGTTGAAAAAGTCCTTTTACGGTTTGAAACAGTTAC
846 AGTATCAAAGAAAGAGGACTATGTTTGCTTGTTGAAAAAGTCCTTTTACGGTTTGAAACAGTTAC
15572688 CA
911 CA
15572690 A
1 A
15572691 GACAGTGGTA
Statistics
Matches: 913, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
912 913 1.00
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (912 bp):
AATTTAAAGATCTTTGGGTGTCTTGCCTATGCTCCTATTAATAATGGAAAATTGGAATCGAGATC
CATTAAATGTGTTTTTCTTGGTTATAAAATTGGTATAAAAGGGTATAAGTTATGGTGTCTTGAAA
ATAGAAAAGTTGTGATTAGCAGAGATGTTGTTTTTGATGAAACTGCTATGCTACCTAACTTATCT
CTTAAAGACTCTTCCAATAAAGAAAATCAAAAGCAGGTGGAGCATCAGATTAATCCAGAATCTAC
AACAGAGTCGACTCCTCAAGCCAGTATAAAAATTCAGAATAGAGTTGCTTCTTTACCACAATACT
TTATCGCCAAAAACATAACTACAAGAGAAATTAAACCTCCAAAGAAGTATGTTGAGTCTGATCTA
GTTGCTTATGCTTTAAATGTGACTGAAGATATAGATGCAAACCAAGAGTCATCTAATTGTTCTGA
GGCGGTTAGCTGTGAAGATTCAGAAAAGTGGATGTTTGCTATGCAAGAGGAGATGGAATCACTTC
ACAAAAATGAAACATGGGATCTTGTAAAACTTCCTAAAGGTAAAAAAGTTATTCGTTGTAAATGG
ATGTTTAAAAAGAAAGAAGAAAACTCCAGGAGTTGAAGACCCAGATATAAAAAAAGGCTTGTTGC
AAAGGGTTACAGTCAAATTCTAGGAGTGAACTTCACAGATGTGTTCTCCCCAATTGTAAAGCATA
GTTCGATTTGAGCTTTGCTTGGTATTGTGGCCATACATGATTTGGAGCTTGAGTAGTTAGATATA
AAAACTGTATTTTTGCATGGAGAACTTGAGGAGGATATTTACATGCAACAACTAGAGGGTTTTAT
AGTATCAAAGAAAGAGGACTATGTTTGCTTGTTGAAAAAGTCCTTTTACGGTTTGAAACAGTTAC
CA
Found at i:15573957 original size:24 final size:24
Alignment explanation
Indices: 15573923--15573974 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
15573913 TTTCTAGAAG
* *
15573923 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAGCATAATAT
*
15573947 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATGAGCATAATAT
15573971 ATTT
1 ATTT
15573975 GAATTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCATAATAT
Found at i:15573985 original size:24 final size:24
Alignment explanation
Indices: 15573923--15573986 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
15573913 TTTCTAGAAG
* * *
15573923 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGAATTTATTAGCATAATAT
*
15573947 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGAATTTATTAGCATAATAT
15573971 ATTT-GAATTTGATTAG
1 ATTTAGAATTT-ATTAG
15573987 AATTAGGTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 5 0.14
24 30 0.86
ACGTcount: A:0.36, C:0.03, G:0.12, T:0.48
Consensus pattern (24 bp):
ATTTAGAATTTATTAGCATAATAT
Found at i:15581646 original size:23 final size:23
Alignment explanation
Indices: 15581601--15581647 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
15581591 CGATAATAGG
* *
15581601 AGTTTTAATTAATTTAGTTAATT
1 AGTTTTAATTAATTCACTTAATT
15581624 AGTTTTAATTAA-TCACTTGAATT
1 AGTTTTAATTAATTCACTT-AATT
15581647 A
1 A
15581648 TTCGGTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.36, C:0.04, G:0.09, T:0.51
Consensus pattern (23 bp):
AGTTTTAATTAATTCACTTAATT
Found at i:15583242 original size:2 final size:2
Alignment explanation
Indices: 15583235--15583277 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
15583225 CATCCTAGGT
15583235 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
15583277 T
1 T
15583278 TTCTTCTTGC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:15590092 original size:24 final size:24
Alignment explanation
Indices: 15590064--15590115 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
15590054 TTCGTAGGTC
15590064 AAATAAATTATACTAATAAATACA
1 AAATAAATTATACTAATAAATACA
* * * *
15590088 AAATATATTATATTAATAGATACT
1 AAATAAATTATACTAATAAATACA
15590112 AAAT
1 AAAT
15590116 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACA
Found at i:15590383 original size:24 final size:24
Alignment explanation
Indices: 15590332--15590382 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
15590322 TTCATAGGTC
* *
15590332 AAATAAATTATGCTAATAAATGTA
1 AAATAAATTATACTAATAAATCTA
*
15590356 AAATATATTATACTAATAAATACTA
1 AAATAAATTATACTAATAAAT-CTA
15590381 AA
1 AA
15590383 TCTTCTAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATCTA
Found at i:15590550 original size:268 final size:266
Alignment explanation
Indices: 15590039--15590579 Score: 843
Period size: 268 Copynumber: 2.0 Consensus size: 266
15590029 TAAAAGTGTC
* *
15590039 TATTTATAGACTAAATTCGTAGGTCAAATAAATTATACTAATAAATACAAAATATATTATATTAA
1 TATTTATAGACTAAATTCATAGGTCAAATAAATTATACTAATAAATACAAAATATATTATACTAA
* * * **
15590104 TAGATACTAAATCTTCTAGAAAGAAAATATATTTTGTTTAACTTGACTTGCAAGTAATCTCTTAT
66 TAAATACTAAATCTTCTAGAAAGAAAATATATTATGTTTAACTTGAATTGCAAACAATCTCTTAT
*
15590169 TTTATTTAATAAGAATTTGGGTAACACATATTTATTAATTTATAATTAAAATTAATTTAAAAAAA
131 TTTATTTAACAAGAATTTGGGTAACACATATTTATTAATTTATAATTAAAATTAATTTAAAAAAA
* *
15590234 TATTTTTAATCTAATAAGTACATTAACTAGACAAATATTACATATATATATTCTTATTATAATGG
196 TATTTTTAATCTAATAAATACATTAACTAGACAAATATT--ATATATATATTCTTATTATAATGA
**
15590299 GTCTCACA
259 GTCAAACA
* * **
15590307 TATTTATAGATTAAATTCATAGGTCAAATAAATTATGCTAATAAATGTAAAATATATTATACTAA
1 TATTTATAGACTAAATTCATAGGTCAAATAAATTATACTAATAAATACAAAATATATTATACTAA
*
15590372 TAAATACTAAATCTTCTAGAAAGAAAATATATTATGTTTAACTTGAATTGCAAACAATGTCTTAT
66 TAAATACTAAATCTTCTAGAAAGAAAATATATTATGTTTAACTTGAATTGCAAACAATCTCTTAT
* *
15590437 TTTATTTGACAAGAATTTGGGTCACACATATGTTTATTAATTTATAATTAAAATTAATTTTTAAA
131 TTTATTTAACAAGAATTTGGGTAACACATA--TTTATTAATTTATAATTAAAATTAA--TTTAAA
15590502 AAAATATTTTTAATCTAATAAATACATTAACTAGACAAATA-T-TATATATATTCTTATTATAAT
192 AAAATATTTTTAATCTAATAAATACATTAACTAGACAAATATTATATATATATTCTTATTATAAT
15590565 GAGTCAAACA
257 GAGTCAAACA
15590575 TATTT
1 TATTT
15590580 TTATTATACT
Statistics
Matches: 250, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
268 178 0.71
270 25 0.10
271 1 0.00
272 46 0.18
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (266 bp):
TATTTATAGACTAAATTCATAGGTCAAATAAATTATACTAATAAATACAAAATATATTATACTAA
TAAATACTAAATCTTCTAGAAAGAAAATATATTATGTTTAACTTGAATTGCAAACAATCTCTTAT
TTTATTTAACAAGAATTTGGGTAACACATATTTATTAATTTATAATTAAAATTAATTTAAAAAAA
TATTTTTAATCTAATAAATACATTAACTAGACAAATATTATATATATATTCTTATTATAATGAGT
CAAACA
Found at i:15590736 original size:24 final size:23
Alignment explanation
Indices: 15590688--15590743 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
15590678 TACGTAGACA
15590688 CTCATATT-CCCCTTCTTTTTTTC
1 CTCAT-TTACCCCTTCTTTTTTTC
15590711 CTCATTTACCCCTT-TTTTTTCCTC
1 CTCATTTACCCCTTCTTTTTT--TC
15590735 CTCATTTAC
1 CTCATTTAC
15590744 TGCCTTTACC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
22 8 0.27
23 11 0.37
24 11 0.37
ACGTcount: A:0.11, C:0.36, G:0.00, T:0.54
Consensus pattern (23 bp):
CTCATTTACCCCTTCTTTTTTTC
Found at i:15594718 original size:38 final size:38
Alignment explanation
Indices: 15594665--15594741 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
15594655 CATGTCCCAT
15594665 TCTTCTATGCCATAACTTGGTTTCATCTAGTGAGTTGG
1 TCTTCTATGCCATAACTTGGTTTCATCTAGTGAGTTGG
*
15594703 TCTTCTATGCTATAACTTGGTTTCATCTAGTGAGTTGG
1 TCTTCTATGCCATAACTTGGTTTCATCTAGTGAGTTGG
15594741 T
1 T
15594742 ATATGCTACT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.18, C:0.17, G:0.21, T:0.44
Consensus pattern (38 bp):
TCTTCTATGCCATAACTTGGTTTCATCTAGTGAGTTGG
Found at i:15596564 original size:17 final size:17
Alignment explanation
Indices: 15596511--15596564 Score: 72
Period size: 17 Copynumber: 3.2 Consensus size: 17
15596501 CATCACAAGT
* *
15596511 TTGGTGAGCTCGCACTA
1 TTGGTGAGCTCGCAGTC
*
15596528 TTGGTGAGCTCACAGTC
1 TTGGTGAGCTCGCAGTC
*
15596545 TTGGTGAGCTCGCAGGC
1 TTGGTGAGCTCGCAGTC
15596562 TTG
1 TTG
15596565 TGTTCACGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.15, C:0.22, G:0.33, T:0.30
Consensus pattern (17 bp):
TTGGTGAGCTCGCAGTC
Found at i:15599520 original size:9 final size:9
Alignment explanation
Indices: 15599508--15599533 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
15599498 TTTTTAAAAT
15599508 TTTTTCAAG
1 TTTTTCAAG
15599517 TTTTTCAAG
1 TTTTTCAAG
15599526 TTTTTCAA
1 TTTTTCAA
15599534 ATATTTCTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.12, G:0.08, T:0.58
Consensus pattern (9 bp):
TTTTTCAAG
Found at i:15609026 original size:72 final size:72
Alignment explanation
Indices: 15608901--15609071 Score: 258
Period size: 72 Copynumber: 2.4 Consensus size: 72
15608891 AAAATCATAT
* * *
15608901 ATAAACAACTATTGATAAAACTA-ATTTAATAAAAATAAGTAGAACATAAATTCAATATCTAAAG
1 ATAAACAACTATTGATAAAACTAGATTTAACAAAAATAAGTAGAACATAAATTCAATATCCAAAA
15608965 ACCAAAC
66 ACCAAAC
* *
15608972 ATAAACAACTATTAATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
1 ATAAACAACTATTGATAAAACTAGATTTA-ACAAAAATAAGTAGAACATAAATTCAATATCCAAA
15609036 AACCAAAC
65 AACCAAAC
*
15609044 ATAAATAACTATTGATAAAACTAG-TTTA
1 ATAAACAACTATTGATAAAACTAGATTTA
15609072 GCATTGCCAG
Statistics
Matches: 90, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
71 25 0.28
72 65 0.72
ACGTcount: A:0.56, C:0.13, G:0.05, T:0.26
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTTAACAAAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:15609515 original size:18 final size:18
Alignment explanation
Indices: 15609494--15609541 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
15609484 TCCATCAATT
*
15609494 TGAACATCATTTGAAATG
1 TGAACATCATTTAAAATG
15609512 TGAACATCATTTAAAATG
1 TGAACATCATTTAAAATG
15609530 TGAACATCATTT
1 TGAACATCATTT
15609542 CTCATATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (18 bp):
TGAACATCATTTAAAATG
Found at i:15611856 original size:11 final size:11
Alignment explanation
Indices: 15611837--15611871 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
15611827 GAACACCAAC
15611837 ACCAGCAGAGA
1 ACCAGCAGAGA
*
15611848 ACCAACAGAGA
1 ACCAGCAGAGA
*
15611859 ACTAGCAGAGA
1 ACCAGCAGAGA
15611870 AC
1 AC
15611872 AAAATTTAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.49, C:0.26, G:0.23, T:0.03
Consensus pattern (11 bp):
ACCAGCAGAGA
Found at i:15611933 original size:14 final size:14
Alignment explanation
Indices: 15611914--15611941 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15611904 ACACCAGCAG
15611914 CAGCAGAGAAGAAC
1 CAGCAGAGAAGAAC
15611928 CAGCAGAGAAGAAC
1 CAGCAGAGAAGAAC
15611942 AAATGTGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.21, G:0.29, T:0.00
Consensus pattern (14 bp):
CAGCAGAGAAGAAC
Found at i:15624938 original size:125 final size:125
Alignment explanation
Indices: 15624716--15624968 Score: 506
Period size: 125 Copynumber: 2.0 Consensus size: 125
15624706 CAATGAAATT
15624716 TGTAAACTATGTAAATTGAACGATATTGATAGATATCATCTTAATGGTAATTTGAAAATTGGAAC
1 TGTAAACTATGTAAATTGAACGATATTGATAGATATCATCTTAATGGTAATTTGAAAATTGGAAC
15624781 ACCGTTTCCTTTTTCTGAAAGTATGTGATTATTGAGGACATGTTGAACATGTCGAATAAA
66 ACCGTTTCCTTTTTCTGAAAGTATGTGATTATTGAGGACATGTTGAACATGTCGAATAAA
15624841 TGTAAACTATGTAAATTGAACGATATTGATAGATATCATCTTAATGGTAATTTGAAAATTGGAAC
1 TGTAAACTATGTAAATTGAACGATATTGATAGATATCATCTTAATGGTAATTTGAAAATTGGAAC
15624906 ACCGTTTCCTTTTTCTGAAAGTATGTGATTATTGAGGACATGTTGAACATGTCGAATAAA
66 ACCGTTTCCTTTTTCTGAAAGTATGTGATTATTGAGGACATGTTGAACATGTCGAATAAA
15624966 TGT
1 TGT
15624969 GAAAAGTATT
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
125 128 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.36
Consensus pattern (125 bp):
TGTAAACTATGTAAATTGAACGATATTGATAGATATCATCTTAATGGTAATTTGAAAATTGGAAC
ACCGTTTCCTTTTTCTGAAAGTATGTGATTATTGAGGACATGTTGAACATGTCGAATAAA
Found at i:15634979 original size:14 final size:15
Alignment explanation
Indices: 15634945--15634987 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
15634935 AGAAATTGAC
**
15634945 TATTTTTATTTTTTA
1 TATTTTTAAATTTTA
*
15634960 TATTTTTGAATTTTA
1 TATTTTTAAATTTTA
15634975 T-TTTTTAAATTTT
1 TATTTTTAAATTTT
15634988 TTTAGATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (15 bp):
TATTTTTAAATTTTA
Found at i:15634989 original size:23 final size:23
Alignment explanation
Indices: 15634948--15635026 Score: 81
Period size: 24 Copynumber: 3.4 Consensus size: 23
15634938 AATTGACTAT
* *
15634948 TTTTATTTTTTATA-TTTTTGAA
1 TTTTATTTTTTAAATTTTTTTAA
15634970 TTTTATTTTTTAAATTTTTTTAGA
1 TTTTATTTTTTAAATTTTTTTA-A
* *
15634994 TTTT-TTTATTAAAATTATTTTTAT
1 TTTTATTT-TTTAAATT-TTTTTAA
15635018 TTTTATTTT
1 TTTTATTTT
15635027 ACTTTTTAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
22 13 0.27
23 9 0.19
24 17 0.35
25 9 0.19
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (23 bp):
TTTTATTTTTTAAATTTTTTTAA
Found at i:15639937 original size:34 final size:33
Alignment explanation
Indices: 15639868--15639956 Score: 81
Period size: 34 Copynumber: 2.6 Consensus size: 33
15639858 ACCGAACACA
* * *
15639868 TAAAAGCATGATTTTTGCCACTGAGTTGATATGT
1 TAAAAGCAT-ATTTTTGCTACTGAATCGATATGT
15639902 TAAAAGCATATTATTTGCTACTGAATCGA-ATTGT
1 TAAAAGCATATT-TTTGCTACTGAATCGATA-TGT
* * *
15639936 TATAAGTATATGGTTTGCTAC
1 TAAAAGCATAT-TTTTGCTAC
15639957 CGTATTCTTC
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
33 4 0.09
34 42 0.91
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.39
Consensus pattern (33 bp):
TAAAAGCATATTTTTGCTACTGAATCGATATGT
Found at i:15652505 original size:18 final size:18
Alignment explanation
Indices: 15652478--15652518 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
15652468 GCGAAGTGTG
* *
15652478 TTAATTTGGTCATCTGTA
1 TTAATATGGTCAACTGTA
*
15652496 TTAATATGGTGAACTGTA
1 TTAATATGGTCAACTGTA
15652514 TTAAT
1 TTAAT
15652519 TTTCCAAACT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.07, G:0.17, T:0.46
Consensus pattern (18 bp):
TTAATATGGTCAACTGTA
Found at i:15655519 original size:23 final size:26
Alignment explanation
Indices: 15655457--15655525 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 26
15655447 AGACTCACCA
* *
15655457 CAGCTCGTACGAGCTTACCGATATAT
1 CAGCTCATATGAGCTTACCGATATAT
*
15655483 CAGCTCTTATGAGCTTACC-AT-T-T
1 CAGCTCATATGAGCTTACCGATATAT
15655506 CAGCTCA-ATAGAGCTTACCG
1 CAGCTCATAT-GAGCTTACCG
15655526 TTCTTTAGCT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
22 2 0.05
23 16 0.42
24 1 0.03
25 2 0.05
26 17 0.45
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (26 bp):
CAGCTCATATGAGCTTACCGATATAT
Found at i:15662692 original size:18 final size:18
Alignment explanation
Indices: 15662652--15662692 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
15662642 TTAATCTTTG
15662652 ATTTA-TTATTTTATTTT
1 ATTTATTTATTTTATTTT
*
15662669 AGTTATTTATTTTAATTTT
1 ATTTATTTATTTT-ATTTT
15662688 -TTTAT
1 ATTTAT
15662693 CTGACTTGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 4 0.20
18 11 0.55
19 5 0.25
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (18 bp):
ATTTATTTATTTTATTTT
Found at i:15662993 original size:14 final size:14
Alignment explanation
Indices: 15662959--15663015 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 14
15662949 TAAAATGAAT
* *
15662959 AAATTAAGTGTAGA
1 AAATTAAGTATTGA
*
15662973 AAA-TAAGTTTTGA
1 AAATTAAGTATTGA
*
15662986 AAATTAAGTATTAA
1 AAATTAAGTATTGA
*
15663000 AAATTTAAGAATTGA
1 AAA-TTAAGTATTGA
15663015 A
1 A
15663016 TTTAAGTTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
13 11 0.31
14 14 0.40
15 10 0.29
ACGTcount: A:0.53, C:0.00, G:0.14, T:0.33
Consensus pattern (14 bp):
AAATTAAGTATTGA
Found at i:15666207 original size:26 final size:27
Alignment explanation
Indices: 15666159--15666210 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
15666149 TTCTTCATTA
*
15666159 TTTAAATGATTTTTATTATGTTTAAAT
1 TTTAAATGATTTTTATTAGGTTTAAAT
15666186 TTTAAA-GTATTTTTATT-GGTTTAAA
1 TTTAAATG-ATTTTTATTAGGTTTAAA
15666211 AACCTATTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.58
Consensus pattern (27 bp):
TTTAAATGATTTTTATTAGGTTTAAAT
Found at i:15666721 original size:16 final size:17
Alignment explanation
Indices: 15666700--15666734 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
15666690 TTTTGATTTG
15666700 TTTTTAAA-TATTTTAA
1 TTTTTAAAGTATTTTAA
15666716 TTTTTAAATGTATTTTAA
1 TTTTTAAA-GTATTTTAA
15666734 T
1 T
15666735 AACGTGTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (17 bp):
TTTTTAAAGTATTTTAA
Found at i:15666860 original size:36 final size:36
Alignment explanation
Indices: 15666805--15666880 Score: 136
Period size: 36 Copynumber: 2.1 Consensus size: 36
15666795 GACACATGAC
15666805 ACTTGTCAACTCTTAACCCTATTTGAGAATTTAAAA
1 ACTTGTCAACTCTTAACCCTATTTGAGAATTTAAAA
15666841 ACTT-TCATACTCTTAACCCTATTTGAGAATTTAAAA
1 ACTTGTCA-ACTCTTAACCCTATTTGAGAATTTAAAA
15666877 ACTT
1 ACTT
15666881 CATTGGTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 3 0.08
36 36 0.92
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.38
Consensus pattern (36 bp):
ACTTGTCAACTCTTAACCCTATTTGAGAATTTAAAA
Found at i:15669839 original size:85 final size:86
Alignment explanation
Indices: 15669696--15669864 Score: 241
Period size: 85 Copynumber: 2.0 Consensus size: 86
15669686 AGATAAAAAA
* * * * *
15669696 ATTTGCAGTTACTATCACTTGTTGTGAGTGCATAACATGGTTGCAAATTAAACAAATTGCCACTG
1 ATTTGCAGTAACTACCACTTGTTGTGAGTGCACAACATAGTTACAAATTAAACAAATTGCCACTG
15669761 GG-TTTGTGGACGAGCCACAT
66 GGTTTTGTGGACGAGCCACAT
* * * *
15669781 ATTTGCAGTAACTGCCACTTGTTGTGAGTGCACAACATATTTACAGATTAAACAAATTGTCACTG
1 ATTTGCAGTAACTACCACTTGTTGTGAGTGCACAACATAGTTACAAATTAAACAAATTGCCACTG
*
15669846 GGTTTTGTGGACGATCCAC
66 GGTTTTGTGGACGAGCCAC
15669865 CACTTTTTTG
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
85 58 0.79
86 15 0.21
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32
Consensus pattern (86 bp):
ATTTGCAGTAACTACCACTTGTTGTGAGTGCACAACATAGTTACAAATTAAACAAATTGCCACTG
GGTTTTGTGGACGAGCCACAT
Found at i:15676008 original size:14 final size:14
Alignment explanation
Indices: 15675985--15676072 Score: 68
Period size: 14 Copynumber: 6.3 Consensus size: 14
15675975 AAATAAACTT
* *
15675985 ATGCGGATTCATAA
1 ATGCGAATTCATAC
15675999 ATGCGAATTCATAC
1 ATGCGAATTCATAC
* * *
15676013 ATTCGTATTCATAT
1 ATGCGAATTCATAC
* * * *
15676027 GTGTGGATTCATAG
1 ATGCGAATTCATAC
* *
15676041 ATACGAATTCATAG
1 ATGCGAATTCATAC
*
15676055 ATGCAAATTCATAC
1 ATGCGAATTCATAC
15676069 ATGC
1 ATGC
15676073 TGATTATCCC
Statistics
Matches: 57, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
14 57 1.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (14 bp):
ATGCGAATTCATAC
Found at i:15676023 original size:28 final size:28
Alignment explanation
Indices: 15675991--15676070 Score: 79
Period size: 28 Copynumber: 2.9 Consensus size: 28
15675981 ACTTATGCGG
* *
15675991 ATTCATAAATGCGAATTCATACATTCGT
1 ATTCATAAATGCGAATTCATACATACGA
** * * *
15676019 ATTCATATGTGTGGATTCATAGATACGA
1 ATTCATAAATGCGAATTCATACATACGA
* *
15676047 ATTCATAGATGCAAATTCATACAT
1 ATTCATAAATGCGAATTCATACAT
15676071 GCTGATTATC
Statistics
Matches: 39, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (28 bp):
ATTCATAAATGCGAATTCATACATACGA
Found at i:15685893 original size:13 final size:14
Alignment explanation
Indices: 15685856--15685902 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
15685846 ATATACAAAG
* *
15685856 ATAAATATAACATAT
1 ATAATTATAA-ATAA
15685871 ATAGATTATAAA-AA
1 ATA-ATTATAAATAA
15685885 ATAATTATAAATAA
1 ATAATTATAAATAA
15685899 ATAA
1 ATAA
15685903 AATAAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 8 0.29
14 10 0.36
15 4 0.14
16 6 0.21
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (14 bp):
ATAATTATAAATAA
Found at i:15689148 original size:192 final size:192
Alignment explanation
Indices: 15688821--15689203 Score: 721
Period size: 192 Copynumber: 2.0 Consensus size: 192
15688811 AATAGGTCCG
*
15688821 GGGAAACTGTTCGCAGATTATCTCATAATGTTTTAAATGTTATCATACGCTTACAAGATGTACTA
1 GGGAAACTGTTAGCAGATTATCTCATAATGTTTTAAATGTTATCATACGCTTACAAGATGTACTA
* *
15688886 TTTAAAAATGCAAAGTCAATTAGAGCTAATTCTACAAATCAAATCTGGAAATTAATCAAGGTATT
66 TTTAAAAATGCAAAGTCAATTACAGCTAATTCTACAAATCAAAGCTGGAAATTAATCAAGGTATT
15688951 GGAGTGAGTTCCATATATAGCTCATACATAATTTAGTTCATTTAGATTTAAGTATAGTAACA
131 GGAGTGAGTTCCATATATAGCTCATACATAATTTAGTTCATTTAGATTTAAGTATAGTAACA
15689013 GGGAAACTGTTAGCAGATTATCTCATAATGTTTTAAATGTTATCATACGCTTACAAGATGTACTA
1 GGGAAACTGTTAGCAGATTATCTCATAATGTTTTAAATGTTATCATACGCTTACAAGATGTACTA
* *
15689078 TTTAAAAATGCAAAGTTAATTACAGCTAATTCTACAAATCAAAGGTGGAAATTAATCAAGGTATT
66 TTTAAAAATGCAAAGTCAATTACAGCTAATTCTACAAATCAAAGCTGGAAATTAATCAAGGTATT
15689143 GGAGTGAGTTCCATATATAGCTCATACATAATTTAGTTCATTTAGATTTAAGTATAGTAAC
131 GGAGTGAGTTCCATATATAGCTCATACATAATTTAGTTCATTTAGATTTAAGTATAGTAAC
15689204 CTAACCCGAG
Statistics
Matches: 186, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
192 186 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (192 bp):
GGGAAACTGTTAGCAGATTATCTCATAATGTTTTAAATGTTATCATACGCTTACAAGATGTACTA
TTTAAAAATGCAAAGTCAATTACAGCTAATTCTACAAATCAAAGCTGGAAATTAATCAAGGTATT
GGAGTGAGTTCCATATATAGCTCATACATAATTTAGTTCATTTAGATTTAAGTATAGTAACA
Found at i:15691858 original size:16 final size:16
Alignment explanation
Indices: 15691846--15691903 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
15691836 GATTATAGTT
15691846 TTATTCTATTATAATC
1 TTATTCTATTATAATC
*
15691862 TTATTCTATTA-CATC
1 TTATTCTATTATAATC
*
15691877 TCTATT-TCATTATAACC
1 T-TATTCT-ATTATAATC
*
15691894 CTATTCTATT
1 TTATTCTATT
15691904 CACCCCAACC
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 5 0.15
16 26 0.76
17 3 0.09
ACGTcount: A:0.28, C:0.19, G:0.00, T:0.53
Consensus pattern (16 bp):
TTATTCTATTATAATC
Found at i:15692350 original size:15 final size:15
Alignment explanation
Indices: 15692330--15692368 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
15692320 GTTTAGTCCC
* *
15692330 TAGGGTTTTTTGGTT
1 TAGGGTTTTTAGGGT
15692345 TAGGGTTTTTAGGGT
1 TAGGGTTTTTAGGGT
15692360 TA-GGTTTTT
1 TAGGGTTTTT
15692369 GTTAAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.10, C:0.00, G:0.33, T:0.56
Consensus pattern (15 bp):
TAGGGTTTTTAGGGT
Found at i:15692411 original size:42 final size:41
Alignment explanation
Indices: 15692348--15692429 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 41
15692338 TTTGGTTTAG
* *
15692348 GGTTTTTAGGGTTAGGTTTTTGTTAAAATAATTTAAGGTTA
1 GGTTTGTAGGGTTAGGGTTTTGTTAAAATAATTTAAGGTTA
*
15692389 GGTTTGTAGGGTTTAGGGTTTTGTTAAAATAATTTAGGGTT
1 GGTTTGTAGGG-TTAGGGTTTTGTTAAAATAATTTAAGGTT
15692430 CTGGGTTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
41 10 0.27
42 27 0.73
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (41 bp):
GGTTTGTAGGGTTAGGGTTTTGTTAAAATAATTTAAGGTTA
Found at i:15692547 original size:35 final size:34
Alignment explanation
Indices: 15692454--15692552 Score: 103
Period size: 34 Copynumber: 2.8 Consensus size: 34
15692444 TTTTTAAAAA
*
15692454 TAAATTAGGATTTAGTGTTCTTTTTTAA-AAATTAAT
1 TAAATTAGG-TTTAGT-TT-TTTTTAAATAAATTAAT
***
15692490 TAAATTAGGGTTTA-TGGGTTTTAAATAAATTAAT
1 TAAATTA-GGTTTAGTTTTTTTTAAATAAATTAAT
15692524 TAAATTTAGGTTTAGTTTTTTTTAAATAA
1 TAAA-TTAGGTTTAGTTTTTTTTAAATAA
15692553 TATTGTGTTT
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
33 6 0.12
34 18 0.35
35 15 0.29
36 11 0.21
37 2 0.04
ACGTcount: A:0.36, C:0.01, G:0.13, T:0.49
Consensus pattern (34 bp):
TAAATTAGGTTTAGTTTTTTTTAAATAAATTAAT
Found at i:15692989 original size:125 final size:126
Alignment explanation
Indices: 15692608--15693125 Score: 676
Period size: 124 Copynumber: 4.2 Consensus size: 126
15692598 AGGATATTGG
* *
15692608 TTTTTCTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACAG-TTCTGAACAAATAGTGTCA
1 TTTTTTTCTACAGTAGTTCCTGAAAAAATAAATTTGAGAAGAC-GTTTCTGAACAAATAGTGTCA
* * * *
15692672 AAAATGCTTCAAGCAAGATGCACTGTCAGCAAAACTACTAAAAAAAGCTCTCACGTGGACGC
65 AAAACGCTTCAAGCAAGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGC
* * * * * * *
15692734 -TCTTTTCTATAGTAATTTCTGAAAAAAT-AATTTGAGAAGACGGTTCTAAACAAATAGTATCAA
1 TTTTTTTCTACAGTAGTTCCTGAAAAAATAAATTTGAGAAGACGTTTCTGAACAAATAGTGTCAA
* * * * *
15692797 AAACGCTTCAAGCAGGATGCACTGTCAGCTAAATTGA-TGAAAAAAGCTCTCATGTGGATGC
66 AAACGCTTCAAGCAAGATGCACTGTCAGCAAAATT-ACTGAAAAAAGCTCCCACGTGGACGC
* *
15692858 TCTTTTTCTACAATAGTTCCT-AAAAAATAAATTTGAGAAGACGTTTCTGAAC-AATAGTGTCAA
1 TTTTTTTCTACAGTAGTTCCTGAAAAAATAAATTTGAGAAGACGTTTCTGAACAAATAGTGTCAA
* *
15692921 AAACGCTTCAAGCAAGATGCACTATTAGCAAAATTGA-TGAAAAAAAGCTCCCACGTGGACGC
66 AAACGCTTCAAGCAAGATGCACTGTCAGCAAAATT-ACTG-AAAAAAGCTCCCACGTGGACGC
* * *
15692983 TTTTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAA
1 TTTTTTTCTACAGTAGTTCCTGAAAAAATAAATTTGAGAAGACGTTTCTGAACAAATAGTGTCAA
** *
15693048 AAACGCTTCAAGCGGGACGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCA--TGGACGC
66 AAACGCTTCAAGCAAGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGC
*
15693107 TCTTTTTCTACAGTAGTTC
1 TTTTTTTCTACAGTAGTTC
15693126 ATGTTTGGCC
Statistics
Matches: 342, Mismatches: 42, Indels: 18
0.85 0.10 0.04
Matches are distributed among these distances:
123 1 0.00
124 159 0.46
125 96 0.28
126 43 0.13
127 43 0.13
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (126 bp):
TTTTTTTCTACAGTAGTTCCTGAAAAAATAAATTTGAGAAGACGTTTCTGAACAAATAGTGTCAA
AAACGCTTCAAGCAAGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGC
Found at i:15696751 original size:3 final size:3
Alignment explanation
Indices: 15696743--15696775 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
15696733 TTCTTGACGT
15696743 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15696776 AGTAAACTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:15697810 original size:17 final size:18
Alignment explanation
Indices: 15697776--15697821 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
15697766 CCGTTATGTC
15697776 CGCGACCGCGA-C--AAA
1 CGCGACCGCGACCGAAAA
15697791 CGCGA-CGCGACCGAAAA
1 CGCGACCGCGACCGAAAA
15697808 CGCGACCGCGACCG
1 CGCGACCGCGACCG
15697822 CAATTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
17 8 0.30
18 8 0.30
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.00
Consensus pattern (18 bp):
CGCGACCGCGACCGAAAA
Found at i:15698035 original size:32 final size:30
Alignment explanation
Indices: 15697960--15698041 Score: 76
Period size: 32 Copynumber: 2.6 Consensus size: 30
15697950 AAAATTTAAA
* *
15697960 TTTATTATTA-ATTTTTTGAAAAATATTTT
1 TTTATTTTTATATTTTTTCAAAAATATTTT
* *
15697989 TGTATTGTTATATATTTTTTCAACAATTATTTTT
1 TTTATT-TT-TATATTTTTTCAA-AAATA-TTTT
15698023 TTTATTTTTATATATTTTT
1 TTTATTTTTATAT-TTTTT
15698042 TAGATGTATT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
29 5 0.12
30 1 0.02
31 2 0.05
32 14 0.33
33 11 0.26
34 9 0.21
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (30 bp):
TTTATTTTTATATTTTTTCAAAAATATTTT
Found at i:15698391 original size:18 final size:17
Alignment explanation
Indices: 15698368--15698406 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 17
15698358 TAATAATACT
15698368 AATAA-TAATAAACTTTTA
1 AATAATTAAT-AAC-TTTA
15698386 AATAATTAATAACTTTA
1 AATAATTAATAACTTTA
15698403 AATA
1 AATA
15698407 TCATGCATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 8 0.40
18 8 0.40
19 4 0.20
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (17 bp):
AATAATTAATAACTTTA
Found at i:15699481 original size:19 final size:19
Alignment explanation
Indices: 15699459--15699496 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
15699449 ATTTATTCAT
15699459 TAAAATAATATTT-TTTAAA
1 TAAAATAAT-TTTCTTTAAA
15699478 TAAAATAATTTTCTTTAAA
1 TAAAATAATTTTCTTTAAA
15699497 AAATCCGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
TAAAATAATTTTCTTTAAA
Found at i:15718916 original size:43 final size:43
Alignment explanation
Indices: 15718855--15718942 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
15718845 TGAAGTAAAG
15718855 TATGGACATAAGCATCTGGTGTATAACATGGCATCTCTAAATA
1 TATGGACATAAGCATCTGGTGTATAACATGGCATCTCTAAATA
15718898 TATGGACATAAGCATCTGGTGTATAACATGGCATCTCTAAATA
1 TATGGACATAAGCATCTGGTGTATAACATGGCATCTCTAAATA
15718941 TA
1 TA
15718943 CAAGATAAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (43 bp):
TATGGACATAAGCATCTGGTGTATAACATGGCATCTCTAAATA
Found at i:15720287 original size:736 final size:736
Alignment explanation
Indices: 15718877--15720347 Score: 2915
Period size: 736 Copynumber: 2.0 Consensus size: 736
15718867 CATCTGGTGT
15718877 ATAACATGGCATCTCTAAATATATGGACATAAGCATCTGGTGTATAACATGGCATCTCTAAATAT
1 ATAACATGGCATCTCTAAATATATGGACATAAGCATCTGGTGTATAACATGGCATCTCTAAATAT
15718942 ACAAGATAAAAATATGTTTATGTGGACATTAATTTTTGTTTGTAATAGCAAAATGAACAAATCCT
66 ACAAGATAAAAATATGTTTATGTGGACATTAATTTTTGTTTGTAATAGCAAAATGAACAAATCCT
15719007 TATGTTTTGATTTCAGGGAACTCCTAATTCTTACATCCAACTAGCATCTTGTTTTGTGATTAATT
131 TATGTTTTGATTTCAGGGAACTCCTAATTCTTACATCCAACTAGCATCTTGTTTTGTGATTAATT
15719072 TATACTGTGATTTGAATATATCTAATACTTTAATATCTTGCAGTAATGGCTCATTAGCCTTTAAT
196 TATACTGTGATTTGAATATATCTAATACTTTAATATCTTGCAGTAATGGCTCATTAGCCTTTAAT
15719137 AGTTTGAATAGAATAGTTTGAACAACATTCTATTGTAAATTAAAATAAAGTGTGGACATAAGCAT
261 AGTTTGAATAGAATAGTTTGAACAACATTCTATTGTAAATTAAAATAAAGTGTGGACATAAGCAT
15719202 CTGGTGTCTGACATAGCATCTCTAAAGATACAAGATAAAAATCATGTTTATGTGGACATTAATTT
326 CTGGTGTCTGACATAGCATCTCTAAAGATACAAGATAAAAATCATGTTTATGTGGACATTAATTT
15719267 TTGTTTACAGTAGCAAAATAAACAAATCCTTATGTTTTGATTTCAAGGAACTCCTGATTCCTACA
391 TTGTTTACAGTAGCAAAATAAACAAATCCTTATGTTTTGATTTCAAGGAACTCCTGATTCCTACA
15719332 TCCAACTAGCATCCTATTTTGAGATTAATTTATATTGTGATTTGAAGATATCTAACACTTTAATA
456 TCCAACTAGCATCCTATTTTGAGATTAATTTATATTGTGATTTGAAGATATCTAACACTTTAATA
15719397 TCTTGCAGTAATGGCTTGTTTATCTTTAATAGTACAAAGTGAGAGGCGAAAAAGAATTGGTCTTA
521 TCTTGCAGTAATGGCTTGTTTATCTTTAATAGTACAAAGTGAGAGGCGAAAAAGAATTGGTCTTA
15719462 CATTGATAGTATGGTTGCAAATATGTACAGTTGCGAGTTGGTTTAGAGTTGTCCATGGGCCGAGT
586 CATTGATAGTATGGTTGCAAATATGTACAGTTGCGAGTTGGTTTAGAGTTGTCCATGGGCCGAGT
15719527 GGCCCGACCCGGCCCGACGGCCTGCCCGAAATATGGGAGGGGTCGGGTAAAAATATAGGCCCGAA
651 GGCCCGACCCGGCCCGACGGCCTGCCCGAAATATGGGAGGGGTCGGGTAAAAATATAGGCCCGAA
*
15719592 ATATGGGTTTGGGCAAAAAAA
716 ATATGGGCTTGGGCAAAAAAA
15719613 ATAACATGGCATCTCTAAATATATGGACATAAGCATCTGGTGTATAACATGGCATCTCTAAATAT
1 ATAACATGGCATCTCTAAATATATGGACATAAGCATCTGGTGTATAACATGGCATCTCTAAATAT
15719678 ACAAGATAAAAATATGTTTATGTGGACATTAATTTTTGTTTGTAATAGCAAAATGAACAAATCCT
66 ACAAGATAAAAATATGTTTATGTGGACATTAATTTTTGTTTGTAATAGCAAAATGAACAAATCCT
15719743 TATGTTTTGATTTCAGGGAACTCCTAATTCTTACATCCAACTAGCATCTTGTTTTGTGATTAATT
131 TATGTTTTGATTTCAGGGAACTCCTAATTCTTACATCCAACTAGCATCTTGTTTTGTGATTAATT
15719808 TATACTGTGATTTGAATATATCTAATACTTTAATATCTTGCAGTAATGGCTCATTAGCCTTTAAT
196 TATACTGTGATTTGAATATATCTAATACTTTAATATCTTGCAGTAATGGCTCATTAGCCTTTAAT
15719873 AGTTTGAATAGAATAGTTTGAACAACATTCTATTGTAAATTAAAATAAAGTGTGGACATAAGCAT
261 AGTTTGAATAGAATAGTTTGAACAACATTCTATTGTAAATTAAAATAAAGTGTGGACATAAGCAT
15719938 CTGGTGTCTGACATAGCATCTCTAAAGATACAAGATAAAAATCATGTTTATGTGGACATTAATTT
326 CTGGTGTCTGACATAGCATCTCTAAAGATACAAGATAAAAATCATGTTTATGTGGACATTAATTT
15720003 TTGTTTACAGTAGCAAAATAAACAAATCCTTATGTTTTGATTTCAAGGAACTCCTGATTCCTACA
391 TTGTTTACAGTAGCAAAATAAACAAATCCTTATGTTTTGATTTCAAGGAACTCCTGATTCCTACA
15720068 TCCAACTAGCATCCTATTTTGAGATTAATTTATATTGTGATTTGAAGATATCTAACACTTTAATA
456 TCCAACTAGCATCCTATTTTGAGATTAATTTATATTGTGATTTGAAGATATCTAACACTTTAATA
15720133 TCTTGCAGTAATGGCTTGTTTATCTTTAATAGTACAAAGTGAGAGGCGAAAAAGAATTGGTCTTA
521 TCTTGCAGTAATGGCTTGTTTATCTTTAATAGTACAAAGTGAGAGGCGAAAAAGAATTGGTCTTA
15720198 CATTGATAGTATGGTTGCAAATATGTACAGTTGCGAGTTGGTTTAGAGTTGTCCATGGGCCGAGT
586 CATTGATAGTATGGTTGCAAATATGTACAGTTGCGAGTTGGTTTAGAGTTGTCCATGGGCCGAGT
* *
15720263 GGCCCGACCCGGCCCGACGGCCTGCCCGAAATATGGGAGGGTTCGGGTAAAAATATAGGCCTGAA
651 GGCCCGACCCGGCCCGACGGCCTGCCCGAAATATGGGAGGGGTCGGGTAAAAATATAGGCCCGAA
15720328 ATATGGGCTTGGGCAAAAAA
716 ATATGGGCTTGGGCAAAAAA
15720348 TGAGGCCCGT
Statistics
Matches: 732, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
736 732 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.34
Consensus pattern (736 bp):
ATAACATGGCATCTCTAAATATATGGACATAAGCATCTGGTGTATAACATGGCATCTCTAAATAT
ACAAGATAAAAATATGTTTATGTGGACATTAATTTTTGTTTGTAATAGCAAAATGAACAAATCCT
TATGTTTTGATTTCAGGGAACTCCTAATTCTTACATCCAACTAGCATCTTGTTTTGTGATTAATT
TATACTGTGATTTGAATATATCTAATACTTTAATATCTTGCAGTAATGGCTCATTAGCCTTTAAT
AGTTTGAATAGAATAGTTTGAACAACATTCTATTGTAAATTAAAATAAAGTGTGGACATAAGCAT
CTGGTGTCTGACATAGCATCTCTAAAGATACAAGATAAAAATCATGTTTATGTGGACATTAATTT
TTGTTTACAGTAGCAAAATAAACAAATCCTTATGTTTTGATTTCAAGGAACTCCTGATTCCTACA
TCCAACTAGCATCCTATTTTGAGATTAATTTATATTGTGATTTGAAGATATCTAACACTTTAATA
TCTTGCAGTAATGGCTTGTTTATCTTTAATAGTACAAAGTGAGAGGCGAAAAAGAATTGGTCTTA
CATTGATAGTATGGTTGCAAATATGTACAGTTGCGAGTTGGTTTAGAGTTGTCCATGGGCCGAGT
GGCCCGACCCGGCCCGACGGCCTGCCCGAAATATGGGAGGGGTCGGGTAAAAATATAGGCCCGAA
ATATGGGCTTGGGCAAAAAAA
Found at i:15721219 original size:10 final size:10
Alignment explanation
Indices: 15721201--15721232 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
15721191 TGTCATCCCC
15721201 ATCATTATAT
1 ATCATTATAT
*
15721211 ATTATTATAT
1 ATCATTATAT
15721221 ATCATTATAT
1 ATCATTATAT
15721231 AT
1 AT
15721233 AATTTTAGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (10 bp):
ATCATTATAT
Found at i:15721225 original size:29 final size:29
Alignment explanation
Indices: 15721170--15721225 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
15721160 TGAGCATGAG
* *
15721170 CCATCATTATATATCATTATGTGTCATCC
1 CCATCATTATATATCATTATATATCATCC
*
15721199 CCATCATTATATATTATTATATATCAT
1 CCATCATTATATATCATTATATATCAT
15721226 TATATATAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.32, C:0.20, G:0.04, T:0.45
Consensus pattern (29 bp):
CCATCATTATATATCATTATATATCATCC
Found at i:15722722 original size:45 final size:45
Alignment explanation
Indices: 15722671--15722766 Score: 158
Period size: 45 Copynumber: 2.1 Consensus size: 45
15722661 TATAAATGGA
15722671 ACATTAGCCGATTGTTTATATAATGGAAAATTAGCTCA-AAATTTC
1 ACATTAGCCGATTGTTTATATAATGGAAAATTAGCT-AGAAATTTC
* *
15722716 ACATTAGCCTATTGTTTATATAATGGAACATTAGCTAGAAATTTC
1 ACATTAGCCGATTGTTTATATAATGGAAAATTAGCTAGAAATTTC
15722761 ACATTA
1 ACATTA
15722767 TTGCCTTGCT
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 1 0.02
45 47 0.98
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (45 bp):
ACATTAGCCGATTGTTTATATAATGGAAAATTAGCTAGAAATTTC
Found at i:15725004 original size:9 final size:9
Alignment explanation
Indices: 15724990--15725015 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
15724980 TTGCAAAAGG
15724990 GACGATGAC
1 GACGATGAC
15724999 GACGATGAC
1 GACGATGAC
15725008 GACGATGA
1 GACGATGA
15725016 GGATGATGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.19, G:0.35, T:0.12
Consensus pattern (9 bp):
GACGATGAC
Found at i:15725233 original size:16 final size:16
Alignment explanation
Indices: 15725212--15725242 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
15725202 GACAGGATAG
15725212 AATTAAGTATGTTTAA
1 AATTAAGTATGTTTAA
15725228 AATTAAGTATGTTTA
1 AATTAAGTATGTTTA
15725243 TTGCTATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (16 bp):
AATTAAGTATGTTTAA
Found at i:15725484 original size:52 final size:52
Alignment explanation
Indices: 15725422--15725525 Score: 181
Period size: 52 Copynumber: 2.0 Consensus size: 52
15725412 TCCTTTTAAT
* *
15725422 TGTTTAATAGAAAGAGACCCAAATGATTCAATGTCTAGTGAATAGGATGGTG
1 TGTTTAATAGAAAGAGACCCAAATGATTCAATGTCCAGTGAACAGGATGGTG
*
15725474 TGTTTAATAGAAAGAGACCCAAGTGATTCAATGTCCAGTGAACAGGATGGTG
1 TGTTTAATAGAAAGAGACCCAAATGATTCAATGTCCAGTGAACAGGATGGTG
15725526 AACATGCAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.27
Consensus pattern (52 bp):
TGTTTAATAGAAAGAGACCCAAATGATTCAATGTCCAGTGAACAGGATGGTG
Found at i:15725705 original size:16 final size:16
Alignment explanation
Indices: 15725686--15725726 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
15725676 AATTTGATAC
15725686 AATTTTAATAACAATT
1 AATTTTAATAACAATT
*
15725702 AATTTTGATAACAATT
1 AATTTTAATAACAATT
*
15725718 AGTTTTAAT
1 AATTTTAAT
15725727 TTTATTACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (16 bp):
AATTTTAATAACAATT
Found at i:15728925 original size:20 final size:21
Alignment explanation
Indices: 15728900--15728957 Score: 73
Period size: 20 Copynumber: 2.8 Consensus size: 21
15728890 TTATTAAGAA
15728900 TGTTATTAAATTATATATTAT
1 TGTTATTAAATTATATATTAT
* *
15728921 T-TTATTAAATTTTATTTTTAT
1 TGTTATTAAATTATA-TATTAT
*
15728942 TGTTATTAAAATATAT
1 TGTTATTAAATTATAT
15728958 CTAATAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 12 0.39
21 8 0.26
22 11 0.35
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.60
Consensus pattern (21 bp):
TGTTATTAAATTATATATTAT
Found at i:15730282 original size:19 final size:20
Alignment explanation
Indices: 15730258--15730297 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
15730248 AGATACATAC
*
15730258 ATACATAAT-GATAATGTGA
1 ATACATAATGGATAATATGA
*
15730277 ATACATTATGGATAATATGA
1 ATACATAATGGATAATATGA
15730297 A
1 A
15730298 ATTTTGTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.47, C:0.05, G:0.15, T:0.33
Consensus pattern (20 bp):
ATACATAATGGATAATATGA
Found at i:15735986 original size:18 final size:16
Alignment explanation
Indices: 15735948--15735989 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
15735938 TTTTTAAAAC
*
15735948 ATTATTATTATATTAT
1 ATTATTATCATATTAT
15735964 A-TATTATCATCATTACT
1 ATTATTATCAT-ATTA-T
15735981 ATTATTATC
1 ATTATTATC
15735990 TCCATATTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 8 0.36
16 5 0.23
17 2 0.09
18 7 0.32
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTATTATCATATTAT
Found at i:15742829 original size:32 final size:32
Alignment explanation
Indices: 15742793--15742857 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
15742783 GACTAGTAAC
15742793 TAAGACTAGTGTTCCACATCAAAACCAACTCT
1 TAAGACTAGTGTTCCACATCAAAACCAACTCT
*
15742825 TAAGACTAGTGTTCCACATCAAAACCAATTCT
1 TAAGACTAGTGTTCCACATCAAAACCAACTCT
15742857 T
1 T
15742858 TCAGTACATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.37, C:0.26, G:0.09, T:0.28
Consensus pattern (32 bp):
TAAGACTAGTGTTCCACATCAAAACCAACTCT
Found at i:15745107 original size:2 final size:2
Alignment explanation
Indices: 15745100--15745135 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
15745090 TGGTAGAACA
*
15745100 AT AT AT AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15745136 CTTTGATGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:15747934 original size:16 final size:17
Alignment explanation
Indices: 15747913--15747945 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
15747903 GAGTGATTTT
*
15747913 GAATCAGTA-AAATCGA
1 GAATCAATACAAATCGA
15747929 GAATCAATACAAATCGA
1 GAATCAATACAAATCGA
15747946 TTGAATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.52, C:0.15, G:0.15, T:0.18
Consensus pattern (17 bp):
GAATCAATACAAATCGA
Found at i:15749577 original size:16 final size:16
Alignment explanation
Indices: 15749558--15749588 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15749548 TTGAATTCTT
15749558 TTTCAAATATATGTGG
1 TTTCAAATATATGTGG
*
15749574 TTTCAAATTTATGTG
1 TTTCAAATATATGTG
15749589 CTCTAACATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.06, G:0.16, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATGTGG
Found at i:15750770 original size:12 final size:12
Alignment explanation
Indices: 15750753--15750785 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
15750743 CAGCCCACCC
15750753 ATATTAATTTTT
1 ATATTAATTTTT
15750765 ATATT-ATTTTT
1 ATATTAATTTTT
15750776 ATA-TAATTTT
1 ATATTAATTTT
15750786 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:15750944 original size:30 final size:30
Alignment explanation
Indices: 15750908--15750970 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
15750898 ACTTAACAAG
15750908 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
15750938 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
15750968 CAA
1 CAA
15750971 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:15752846 original size:19 final size:19
Alignment explanation
Indices: 15752815--15752851 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
15752805 TATATTGGTT
15752815 TTAATCTATATTAATTATC
1 TTAATCTATATTAATTATC
15752834 TTAAT-TATGATTAATTAT
1 TTAATCTAT-ATTAATTAT
15752852 TGAATTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (19 bp):
TTAATCTATATTAATTATC
Found at i:15753489 original size:18 final size:18
Alignment explanation
Indices: 15753457--15753502 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
15753447 AATTCCTCCC
15753457 TCTTTTCTCTTTCTCTTCA
1 TCTTTTCT-TTTCTCTTCA
15753476 TCTTTTCTTTTCTCTTCA
1 TCTTTTCTTTTCTCTTCA
15753494 --TTTTCTTTT
1 TCTTTTCTTTT
15753503 TCATCATATT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.33
18 10 0.37
19 8 0.30
ACGTcount: A:0.04, C:0.26, G:0.00, T:0.70
Consensus pattern (18 bp):
TCTTTTCTTTTCTCTTCA
Found at i:15753514 original size:16 final size:16
Alignment explanation
Indices: 15753473--15753514 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
15753463 CTCTTTCTCT
15753473 TCATC-TTTTCTTTTC
1 TCATCATTTTCTTTTC
*
15753488 TCTTCATTTTCTTTT-
1 TCATCATTTTCTTTTC
15753503 TCATCATATTTC
1 TCATCAT-TTTC
15753515 ACATTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.64
Consensus pattern (16 bp):
TCATCATTTTCTTTTC
Found at i:15755751 original size:423 final size:423
Alignment explanation
Indices: 15754953--15756194 Score: 1982
Period size: 423 Copynumber: 2.9 Consensus size: 423
15754943 CAACGGCTTA
*
15754953 AACCAGTTTTGGTTTATGTGAACTCTTCAAAGATGTGATAACTTTCTTCTCCATGCTAAAAGCCA
1 AACCAATTTTGGTTTATGTGAACTCTTCAAAGATGTGATAACTTTCTTCTCCATGCTAAAAGCCA
*
15755018 ACTTGAAAGCTACAGTCGATATTGGAATTGCCAAACGATCATGAGCCAATAATGAAAGCTCATGC
66 ACTTGAAAGCTACAGTCGATATTGGAATTGCCAAAAGATCATGAGCCAATAATGAAAGCTCATGC
*
15755083 TATAAAATTGAAGTTTTGCTCCAATAATCCAATACTTCTATTTGGTTATTCAACTTAAGCTTTGG
131 TATAAAATTGAAGTTTTGCTCCAATAATCCAATACTTCTATTTGGCTATTCAACTTAAGCTTTGG
* * *
15755148 TTCCTCCAAATAAATGCTCAACTATGACTTTTTACTCTTAGTATTGCATTCACTTAAGTATCGAT
196 TTCTTCCAAATAAATGTTCAACTATGACTTTTCACTCTTAGTATTGCATTCACTTAAGTATCGAT
15755213 TATAACCATCACCCTTATCATATTCTCCTCCCAAATCAGCCCTATTAACATTGAGTTGATGCAAA
261 TATAACCATCACCCTTATCATATTCTCCTCCCAAATCAGCCCTATTAACATTGAGTTGATGCAAA
* *
15755278 CAAGAATTAACAGGATCATTATTTGAAACATTGGAACTTCTGACCAAATAGGAAGACGTGGATTT
326 CAAGAATTAACAGGATCATTATTCGAAACATTGGAACTCCTGACCAAATAGGAAGACGTGGATTT
*
15755343 GGAGTTCCAGTCATCAAAGCAAGCAACAAATTG
391 GGAGTTCCAGTCATCAAAGCAAACAACAAATTG
* * *
15755376 AACTAATTTTGATTTATGTGAACTCTTCAAAGGTGTGATAACTTTCTTCTCCATGCTAAAAGCCA
1 AACCAATTTTGGTTTATGTGAACTCTTCAAAGATGTGATAACTTTCTTCTCCATGCTAAAAGCCA
15755441 ACTTGAAAGCTACAGTCGATATTGGAATTGCCAAAAGATCATGAGCCAATAATGAAAGCTCATGC
66 ACTTGAAAGCTACAGTCGATATTGGAATTGCCAAAAGATCATGAGCCAATAATGAAAGCTCATGC
*
15755506 TATCAAATTGAAGTTTTGCTCCAATAATCCAATACTTCTATTTGGCTATTCAACTTAAGCTTTGG
131 TATAAAATTGAAGTTTTGCTCCAATAATCCAATACTTCTATTTGGCTATTCAACTTAAGCTTTGG
* *
15755571 TTCTTCCAAATAAATGTTCAACTATGACTTTTCACTTTTAGTATTGCATTCACTTAAGTATTGAT
196 TTCTTCCAAATAAATGTTCAACTATGACTTTTCACTCTTAGTATTGCATTCACTTAAGTATCGAT
15755636 TATAACCATCACCCTTATCATATTCTCCTCCCAAATCAGCCCTATTAACATTGAGTTGATGCAAA
261 TATAACCATCACCCTTATCATATTCTCCTCCCAAATCAGCCCTATTAACATTGAGTTGATGCAAA
* * *
15755701 CTAGAATTAACATGATCATTATTCGAAACATTGGAACTCCTGACCAAATAGGAAGACATGGATTT
326 CAAGAATTAACAGGATCATTATTCGAAACATTGGAACTCCTGACCAAATAGGAAGACGTGGATTT
*
15755766 GGAGTTCCAGTCATCAAAGCAAACAACAACTTG
391 GGAGTTCCAGTCATCAAAGCAAACAACAAATTG
* * * *
15755799 AACCAGTTTTGGTTTATGTGAACTCTTCGAAGTTGTGATAGCTTTCTTC-CTCATGCTAAAAGCC
1 AACCAATTTTGGTTTATGTGAACTCTTCAAAGATGTGATAACTTTCTTCTC-CATGCTAAAAGCC
* * * * *
15755863 AACTCGAAAGCTACAGTCGATATTGGAATTACTAAAAGATAACGAGCCAATAATGAAAGCTCATG
65 AACTTGAAAGCTACAGTCGATATTGGAATTGCCAAAAGATCATGAGCCAATAATGAAAGCTCATG
* ** * * * * * *
15755928 ATATTGAATTGAAGTTTTGCTCCAGTAATCCAATACATCTATTTGGCTATTTAACTCAAGCTCTA
130 CTATAAAATTGAAGTTTTGCTCCAATAATCCAATACTTCTATTTGGCTATTCAACTTAAGCTTTG
* * * *
15755993 ATTCTTCCAAATAAATGTTTAACTTTGACTTTTCACTCTTAGTATTGGATTCACTTAAGTATCGA
195 GTTCTTCCAAATAAATGTTCAACTATGACTTTTCACTCTTAGTATTGCATTCACTTAAGTATCGA
* * * * * * *
15756058 TTATAATCACCACTCTCATCATATGCTCTTCCCAAATCAGCCCTATTAACATTGAGTTGATACAA
260 TTATAACCATCACCCTTATCATATTCTCCTCCCAAATCAGCCCTATTAACATTGAGTTGATGCAA
* * * * *
15756123 ACCAGAATTAACAGGATCATTATCCGAAACATTGGAACTCCCGACCAAAGAGGAAGACGTGCATT
325 ACAAGAATTAACAGGATCATTATTCGAAACATTGGAACTCCTGACCAAATAGGAAGACGTGGATT
*
15756188 TGAAGTT
390 TGGAGTT
15756195 TTTAACATAT
Statistics
Matches: 758, Mismatches: 60, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
422 1 0.00
423 757 1.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.32
Consensus pattern (423 bp):
AACCAATTTTGGTTTATGTGAACTCTTCAAAGATGTGATAACTTTCTTCTCCATGCTAAAAGCCA
ACTTGAAAGCTACAGTCGATATTGGAATTGCCAAAAGATCATGAGCCAATAATGAAAGCTCATGC
TATAAAATTGAAGTTTTGCTCCAATAATCCAATACTTCTATTTGGCTATTCAACTTAAGCTTTGG
TTCTTCCAAATAAATGTTCAACTATGACTTTTCACTCTTAGTATTGCATTCACTTAAGTATCGAT
TATAACCATCACCCTTATCATATTCTCCTCCCAAATCAGCCCTATTAACATTGAGTTGATGCAAA
CAAGAATTAACAGGATCATTATTCGAAACATTGGAACTCCTGACCAAATAGGAAGACGTGGATTT
GGAGTTCCAGTCATCAAAGCAAACAACAAATTG
Found at i:15757615 original size:18 final size:18
Alignment explanation
Indices: 15757592--15757626 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
15757582 TGCAATATAT
15757592 ATAAAAAAAATAAATAAC
1 ATAAAAAAAATAAATAAC
*
15757610 ATAAAAATAATAAATAA
1 ATAAAAAAAATAAATAA
15757627 TTTATGAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (18 bp):
ATAAAAAAAATAAATAAC
Found at i:15758026 original size:12 final size:11
Alignment explanation
Indices: 15758004--15758056 Score: 54
Period size: 12 Copynumber: 4.7 Consensus size: 11
15757994 ATTTTAAAAT
*
15758004 TATACATAATA
1 TATAAATAATA
15758015 TAATAAATAATA
1 T-ATAAATAATA
* *
15758027 TA-CAATAAAA
1 TATAAATAATA
15758037 TATAAATAATA
1 TATAAATAATA
15758048 TAATAAATA
1 T-ATAAATA
15758057 GTAGAAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
10 8 0.24
11 9 0.26
12 17 0.50
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (11 bp):
TATAAATAATA
Found at i:15758028 original size:21 final size:20
Alignment explanation
Indices: 15758004--15758054 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
15757994 ATTTTAAAAT
*
15758004 TATACATAATATAATAAATAA
1 TATACATAAAAT-ATAAATAA
15758025 TATACAATAAAATATAAATAA
1 TATAC-ATAAAATATAAATAA
15758046 TATA-ATAAA
1 TATACATAAA
15758055 TAGTAGAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 5 0.18
21 17 0.61
22 6 0.21
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (20 bp):
TATACATAAAATATAAATAA
Found at i:15758075 original size:33 final size:34
Alignment explanation
Indices: 15757998--15758075 Score: 99
Period size: 33 Copynumber: 2.4 Consensus size: 34
15757988 TTACAAATTT
* *
15757998 TAAAATTATACATAATATAATAAATAATATACAA
1 TAAAATTATAAATAATATAATAAATAATAGACAA
*
15758032 TAAAA-TATAAATAATATAATAAATAGTAGA-AA
1 TAAAATTATAAATAATATAATAAATAATAGACAA
15758064 -AAAATTAATAAA
1 TAAAATT-ATAAA
15758076 ATAACTATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
31 4 0.10
32 3 0.08
33 27 0.69
34 5 0.13
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (34 bp):
TAAAATTATAAATAATATAATAAATAATAGACAA
Found at i:15758139 original size:25 final size:25
Alignment explanation
Indices: 15758111--15758159 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
15758101 AGGTTTAAAG
*
15758111 TAAAATAAATAATATACAAAATATT
1 TAAAATAAATAATATAAAAAATATT
*
15758136 TAAAATAAATTATATAAAAAATAT
1 TAAAATAAATAATATAAAAAATAT
15758160 ATATATATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (25 bp):
TAAAATAAATAATATAAAAAATATT
Found at i:15759782 original size:45 final size:45
Alignment explanation
Indices: 15759725--15760134 Score: 138
Period size: 45 Copynumber: 9.1 Consensus size: 45
15759715 CCATGCTGAA
* * *
15759725 ATCTTTGATCTGCTCCCCGCCTAATACAGAGACGCCAAATCTGTC
1 ATCTTCGATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTGTC
* * * * * * *
15759770 ATCCTCGATCTGCT--TCGATGTAA-ACACACGAATGTCAGATCTGGT-
1 ATCTTCGATCTGCTCCCCG-TCTAATACA-AAG-ACGCCAAATCT-GTC
*
15759815 ATCTTCGATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTATC
1 ATCTTCGATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTGTC
* * * * * *
15759860 ATCTTCGATCTGCT--TCGATGTAA-ACACATGAATGTCAGATCTG-C
1 ATCTTCGATCTGCTCCCCG-TCTAATACA-AAG-ACGCCAAATCTGTC
* * * * * * *
15759904 TACCTTCGATCTACTGCCTGTCTGATACAGAA-ACCCCAAATCTATC
1 -ATCTTCGATCTGCTCCCCGTCTAATACA-AAGACGCCAAATCTGTC
* * * * * *
15759950 ATCTTCGATCTACT--TCGATGTAA-ACACACGAATGTCAAATCTG-C
1 ATCTTCGATCTGCTCCCCG-TCTAATACA-AAG-ACGCCAAATCTGTC
* * *
15759994 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAACCTGTC
1 -ATCTTCGATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTGTC
* * * * * * *
15760040 ATCTGT-GATCTACT--TCGATGTAA-ACACATGAATGTCAGATCTG-C
1 ATCT-TCGATCTGCTCCCCG-TCTAATACA-AAG-ACGCCAAATCTGTC
* * *
15760084 TATCTTCGATCTGCTTCCCGTCTAATACAGAGATGCCAAA-CTGTC
1 -ATCTTCGATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTGTC
15760129 ATCTTC
1 ATCTTC
15760135 AATTTGCTTC
Statistics
Matches: 257, Mismatches: 74, Indels: 69
0.64 0.19 0.17
Matches are distributed among these distances:
43 20 0.08
44 32 0.12
45 161 0.63
46 24 0.09
47 20 0.08
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (45 bp):
ATCTTCGATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTGTC
Found at i:15759839 original size:90 final size:90
Alignment explanation
Indices: 15759725--15760269 Score: 772
Period size: 90 Copynumber: 6.1 Consensus size: 90
15759715 CCATGCTGAA
* * * *
15759725 ATCTTTGATCTGCTCCCCGCCTAATACAGAGACGCCAAATCTGTCATCCTCGATCTGCTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATG
*
15759790 TAAACACACGAATGTCAGATCTGGT
66 TAAACACACGAATGTCAGATCTGCT
*
15759815 ATCTTCGATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTATCATCTTCGATCTGCTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATG
*
15759880 TAAACACATGAATGTCAGATCTGCT
66 TAAACACACGAATGTCAGATCTGCT
* * * * * * * *
15759905 ACCTTCGATCTACTGCCTGTCTGATACAGAAACCCCAAATCTATCATCTTCGATCTACTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATG
*
15759970 TAAACACACGAATGTCAAATCTGCT
66 TAAACACACGAATGTCAGATCTGCT
* * * *
15759995 ATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAACCTGTCATCTGT-GATCTACTTCGAT
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCT-TCGATCTGCTTCGAT
*
15760059 GTAAACACATGAATGTCAGATCTGCT
65 GTAAACACACGAATGTCAGATCTGCT
* * * * *
15760085 ATCTTCGATCTGCTTCCCGTCTAATACAGAGATGCCAAA-CTGTCATCTTCAATTTGCTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATG
* *
15760149 TAAACACATGAATGTCAGATATGCT
66 TAAACACACGAATGTCAGATCTGCT
** *
15760174 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACTTCAAATCTATCA-CTTTCGATATGCTTCGAT
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATC-TTCGATCTGCTTCGAT
15760238 GTAAACACACGAATGTCAGATCTGCT
65 GTAAACACACGAATGTCAGATCTGCT
15760264 ATCTTC
1 ATCTTC
15760270 TCCCTGTTTA
Statistics
Matches: 405, Mismatches: 46, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
88 1 0.00
89 80 0.20
90 323 0.80
91 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (90 bp):
ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATG
TAAACACACGAATGTCAGATCTGCT
Found at i:15771913 original size:67 final size:64
Alignment explanation
Indices: 15771761--15771913 Score: 164
Period size: 67 Copynumber: 2.3 Consensus size: 64
15771751 AATACTAAAT
* * * * * *
15771761 AATATAAACTACATGATACATACTTTAACATTTCATGCAAATATAATATAAAAAATGATAAATGA
1 AATATAAATTACAT-A-ATATACATTAACATTTCATGCAAATAAAATAGAAAAAATGATAAATAA
15771826 C
64 C
* * *
15771827 GACATAAATTACATAATATACATTAACATTTCATGCAAAATACAAAATAGAAAACAATGA-ATAT
1 AATATAAATTACATAATATACATTAACATTTCATGC-AAAT--AAAATAGAAAA-AATGATAAAT
15771891 AAC
62 AAC
15771894 AATATAAATTACATAATATA
1 AATATAAATTACATAATATA
15771914 TGTACAATAA
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
64 19 0.26
65 5 0.07
66 11 0.15
67 32 0.44
68 5 0.07
ACGTcount: A:0.54, C:0.12, G:0.05, T:0.29
Consensus pattern (64 bp):
AATATAAATTACATAATATACATTAACATTTCATGCAAATAAAATAGAAAAAATGATAAATAAC
Found at i:15772007 original size:18 final size:18
Alignment explanation
Indices: 15771984--15772018 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
15771974 TGCAATATAT
15771984 ATAAAAACAATAAATAAC
1 ATAAAAACAATAAATAAC
*
15772002 ATAAAAATAATAAATAA
1 ATAAAAACAATAAATAA
15772019 TTTATGAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (18 bp):
ATAAAAACAATAAATAAC
Found at i:15772420 original size:12 final size:12
Alignment explanation
Indices: 15772403--15772472 Score: 65
Period size: 12 Copynumber: 6.0 Consensus size: 12
15772393 AAAATTATAC
15772403 ATAATATAATAA
1 ATAATATAATAA
*
15772415 ATAATAT-A-CA
1 ATAATATAATAA
*
15772425 ATAAAAT-ATAA
1 ATAATATAATAA
15772436 ATAATATAATAA
1 ATAATATAATAA
* *
15772448 ATAATACAAAAAA
1 ATAATA-TAATAA
*
15772461 ATAATAAAATAA
1 ATAATATAATAA
15772473 CTATTTTTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
10 8 0.17
11 8 0.17
12 22 0.46
13 10 0.21
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (12 bp):
ATAATATAATAA
Found at i:15772422 original size:21 final size:20
Alignment explanation
Indices: 15772398--15772453 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
15772388 ATTTTAAAAT
15772398 TATACATAATATAATAAATAA
1 TATACATAA-ATAATAAATAA
15772419 TATACAATAAA-ATATAAATAA
1 TATAC-ATAAATA-ATAAATAA
15772440 TATA-ATAAATAATA
1 TATACATAAATAATA
15772454 CAAAAAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
19 8 0.25
20 2 0.06
21 18 0.56
22 4 0.12
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (20 bp):
TATACATAAATAATAAATAA
Found at i:15772472 original size:33 final size:33
Alignment explanation
Indices: 15772393--15772468 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 33
15772383 CACAAATTTT
* *
15772393 AAAATTATACATAATATAATAAATAATATACAA
1 AAAAATATAAATAATATAATAAATAATATACAA
*
15772426 TAAAATATAAATAATATAATAAAT-A-ATACAA
1 AAAAATATAAATAATATAATAAATAATATACAA
15772457 AAAAATAATAAA
1 AAAAAT-ATAAA
15772469 ATAACTATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
31 11 0.29
32 6 0.16
33 21 0.55
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (33 bp):
AAAAATATAAATAATATAATAAATAATATACAA
Found at i:15772532 original size:25 final size:24
Alignment explanation
Indices: 15772504--15772551 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
15772494 AGGTTTAAAG
15772504 TAAAATAAATAATATACAAAATATT
1 TAAAATAAATAATATA-AAAATATT
*
15772529 TAAAATAAATTATATAAAAATAT
1 TAAAATAAATAATATAAAAATAT
15772552 ATATATACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (24 bp):
TAAAATAAATAATATAAAAATATT
Found at i:15772556 original size:12 final size:12
Alignment explanation
Indices: 15772510--15772570 Score: 54
Period size: 12 Copynumber: 5.1 Consensus size: 12
15772500 AAAGTAAAAT
15772510 AAATA-ATATACA
1 AAATATATATA-A
* *
15772522 AAATATTTAAAA
1 AAATATATATAA
15772534 TAAAT-TATATAA
1 -AAATATATATAA
*
15772546 AAATATATATAT
1 AAATATATATAA
*
15772558 ACATATATATAA
1 AAATATATATAA
15772570 A
1 A
15772571 GGATTAAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
11 4 0.10
12 28 0.72
13 7 0.18
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (12 bp):
AAATATATATAA
Found at i:15777272 original size:102 final size:102
Alignment explanation
Indices: 15777150--15777364 Score: 421
Period size: 102 Copynumber: 2.1 Consensus size: 102
15777140 CGTAGATTCA
15777150 ATTAAACTTTGGAGAAGCATTTATCAAAGAAAATATTGGAATAGTCGAAGTTATACTACATGAAT
1 ATTAAACTTTGGAGAAGCATTTATCAAAGAAAATATTGGAATAGTCGAAGTTATACTACATGAAT
*
15777215 TTTAATTCATTATCTTTGATTTGATGTAATTATATAT
66 TTTAATTCATTATCTTTGATTTGATGCAATTATATAT
15777252 ATTAAACTTTGGAGAAGCATTTATCAAAGAAAATATTGGAATAGTCGAAGTTATACTACATGAAT
1 ATTAAACTTTGGAGAAGCATTTATCAAAGAAAATATTGGAATAGTCGAAGTTATACTACATGAAT
15777317 TTTAATTCATTATCTTTGATTTGATGCAATTATATAT
66 TTTAATTCATTATCTTTGATTTGATGCAATTATATAT
15777354 ATTAAACTTTG
1 ATTAAACTTTG
15777365 ATTGTGATTC
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 112 1.00
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.40
Consensus pattern (102 bp):
ATTAAACTTTGGAGAAGCATTTATCAAAGAAAATATTGGAATAGTCGAAGTTATACTACATGAAT
TTTAATTCATTATCTTTGATTTGATGCAATTATATAT
Found at i:15779552 original size:20 final size:20
Alignment explanation
Indices: 15779529--15779579 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
15779519 AAATGAAAAT
15779529 AAATATATAAAAATTTAGAA
1 AAATATATAAAAATTTAGAA
* * * *
15779549 AAATACATATAATTTTATAA
1 AAATATATAAAAATTTAGAA
15779569 AAAT-TATAAAA
1 AAATATATAAAA
15779580 TTGAAAGAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
AAATATATAAAAATTTAGAA
Found at i:15782638 original size:4 final size:4
Alignment explanation
Indices: 15782629--15782660 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
15782619 AGTGCATGCG
15782629 TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA
15782661 CGAATGCATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
TACA
Found at i:15791154 original size:16 final size:16
Alignment explanation
Indices: 15791133--15791167 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
15791123 AATAATTAAA
15791133 ATATAAATTTTATAAC
1 ATATAAATTTTATAAC
*
15791149 ATATAAATTTTATACC
1 ATATAAATTTTATAAC
15791165 ATA
1 ATA
15791168 ATTTACTACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATAAATTTTATAAC
Found at i:15793356 original size:14 final size:14
Alignment explanation
Indices: 15793337--15793373 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
15793327 GAAAACGTGT
*
15793337 AATAATATTATTTG
1 AATAATATTATTTA
15793351 AATAATATTATTTA
1 AATAATATTATTTA
15793365 AGATAATAT
1 A-ATAATAT
15793374 AAGTATATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (14 bp):
AATAATATTATTTA
Found at i:15794973 original size:18 final size:18
Alignment explanation
Indices: 15794936--15794973 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
15794926 ATTATTTTTC
*
15794936 AAAAATATTTTTGGGCAA
1 AAAAATATTTTTGAGCAA
*
15794954 AAAAATATTTTTGAGTAA
1 AAAAATATTTTTGAGCAA
15794972 AA
1 AA
15794974 GTTAAAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.13, T:0.34
Consensus pattern (18 bp):
AAAAATATTTTTGAGCAA
Found at i:15795025 original size:20 final size:20
Alignment explanation
Indices: 15794992--15795042 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
15794982 TTTCTACTTC
15794992 TACTTTTG--AAAAAAAAAG
1 TACTTTTGCAAAAAAAAAAG
**
15795010 TGGTTTTGCAAAAAAAAAAG
1 TACTTTTGCAAAAAAAAAAG
15795030 TACTTTTGCAAAA
1 TACTTTTGCAAAA
15795043 TATTTTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 6 0.22
20 21 0.78
ACGTcount: A:0.49, C:0.08, G:0.14, T:0.29
Consensus pattern (20 bp):
TACTTTTGCAAAAAAAAAAG
Found at i:15797778 original size:39 final size:39
Alignment explanation
Indices: 15797724--15797888 Score: 276
Period size: 39 Copynumber: 4.2 Consensus size: 39
15797714 NNNNNNNNNN
15797724 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
15797763 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
15797802 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * * *
15797841 TATATCCGGACTTAAGGTCTGTAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
15797880 TATGTCCGG
1 TATATCCGG
15797889 GCTAAAGTCC
Statistics
Matches: 120, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 120 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:15806059 original size:40 final size:39
Alignment explanation
Indices: 15806004--15806193 Score: 132
Period size: 40 Copynumber: 4.4 Consensus size: 39
15805994 AATGATATTT
15806004 GGCACTAAGTGTGCGATTTAAACTAGCTTCGGCTATATGA
1 GGCACTAAGTGTGCGATTTAAA-TAGCTTCGGCTATATGA
** * *
15806044 GGCACTAAGTGTGCGATACCAAGATAGCTTCAGTTA-ATTGA
1 GGCACTAAGTGTGCGAT-TTAA-ATAGCTTCGGCTATA-TGA
* *
15806085 GAAAGCACTAAGTGTGCGAAATTATTATAGCTTCGGCTAATCTTTAAT-A
1 G---GCACTAAGTGTGCG-ATTTA-AATAGCTTCGGCT-A----T-ATGA
*
15806134 TTTGGCACTAAATGTGCGATTTAAACTAGCTTCGGCTATATGA
1 ---GGCACTAAGTGTGCGATTTAAA-TAGCTTCGGCTATATGA
15806177 GGCACTAAGTGTGCGAT
1 GGCACTAAGTGTGCGAT
15806194 ACCAAGATAG
Statistics
Matches: 116, Mismatches: 14, Indels: 40
0.68 0.08 0.24
Matches are distributed among these distances:
40 34 0.29
41 16 0.14
42 3 0.03
43 2 0.02
44 25 0.22
45 2 0.02
47 2 0.02
48 15 0.13
49 14 0.12
50 1 0.01
51 1 0.01
52 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (39 bp):
GGCACTAAGTGTGCGATTTAAATAGCTTCGGCTATATGA
Found at i:15806100 original size:44 final size:44
Alignment explanation
Indices: 15806045--15806236 Score: 137
Period size: 44 Copynumber: 4.3 Consensus size: 44
15806035 GCTATATGAG
*
15806045 GCACTAAGTGTGCGATACCAAGATAGCTTCAGTTAATTGAGAAA
1 GCACTAAGTGTGCGATACCAAGATAGCTTCAGCTAATTGAGAAA
* ** ** * * *
15806089 GCACTAAGTGTGCGAAATTATTATAGCTTCGGCTAATCTTTA-ATATTTG
1 GCACTAAGTGTGCGATACCAAGATAGCTTCAGCTAA--TTGAGA-A---A
* ** *
15806138 GCACTAAATGTGCGAT-TTAA-ACTAGCTTCGGCT-ATATGAG---
1 GCACTAAGTGTGCGATACCAAGA-TAGCTTCAGCTAAT-TGAGAAA
*
15806178 GCACTAAGTGTGCGATACCAAGATAGCTTCAGTTAATTGAGAAA
1 GCACTAAGTGTGCGATACCAAGATAGCTTCAGCTAATTGAGAAA
15806222 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
15806237 AATTATTATA
Statistics
Matches: 115, Mismatches: 18, Indels: 30
0.71 0.11 0.18
Matches are distributed among these distances:
40 15 0.13
41 15 0.13
42 3 0.03
44 44 0.38
45 2 0.02
46 6 0.05
47 2 0.02
48 14 0.12
49 14 0.12
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.29
Consensus pattern (44 bp):
GCACTAAGTGTGCGATACCAAGATAGCTTCAGCTAATTGAGAAA
Found at i:15806236 original size:133 final size:133
Alignment explanation
Indices: 15805998--15806264 Score: 525
Period size: 133 Copynumber: 2.0 Consensus size: 133
15805988 TAAATCAATG
*
15805998 ATATTTGGCACTAAGTGTGCGATTTAAACTAGCTTCGGCTATATGAGGCACTAAGTGTGCGATAC
1 ATATTTGGCACTAAATGTGCGATTTAAACTAGCTTCGGCTATATGAGGCACTAAGTGTGCGATAC
15806063 CAAGATAGCTTCAGTTAATTGAGAAAGCACTAAGTGTGCGAAATTATTATAGCTTCGGCTAATCT
66 CAAGATAGCTTCAGTTAATTGAGAAAGCACTAAGTGTGCGAAATTATTATAGCTTCGGCTAATCT
15806128 TTA
131 TTA
15806131 ATATTTGGCACTAAATGTGCGATTTAAACTAGCTTCGGCTATATGAGGCACTAAGTGTGCGATAC
1 ATATTTGGCACTAAATGTGCGATTTAAACTAGCTTCGGCTATATGAGGCACTAAGTGTGCGATAC
15806196 CAAGATAGCTTCAGTTAATTGAGAAAGCACTAAGTGTGCGAAATTATTATAGCTTCGGCTAATCT
66 CAAGATAGCTTCAGTTAATTGAGAAAGCACTAAGTGTGCGAAATTATTATAGCTTCGGCTAATCT
15806261 TTA
131 TTA
15806264 A
1 A
15806265 AGCACTAAGT
Statistics
Matches: 133, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 133 1.00
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.31
Consensus pattern (133 bp):
ATATTTGGCACTAAATGTGCGATTTAAACTAGCTTCGGCTATATGAGGCACTAAGTGTGCGATAC
CAAGATAGCTTCAGTTAATTGAGAAAGCACTAAGTGTGCGAAATTATTATAGCTTCGGCTAATCT
TTA
Found at i:15806248 original size:44 final size:44
Alignment explanation
Indices: 15806067--15806276 Score: 130
Period size: 44 Copynumber: 4.8 Consensus size: 44
15806057 CGATACCAAG
*
15806067 ATAGCTTCAGTTAATTGAGAAAGCACTAAGTGTGCGAAATTATT
1 ATAGCTTCAGCTAATTGAGAAAGCACTAAGTGTGCGAAATTATT
* * * * * *
15806111 ATAGCTTCGGCTAATCTTTA-ATATTTGGCACTAAATGTGCG-ATTTA-A
1 ATAGCTTCAGCTAA--TTGAGA-A---AGCACTAAGTGTGCGAAATTATT
* * ** **
15806158 ACTAGCTTCGGCT-ATATGAG---GCACTAAGTGTGCGATACCAAG
1 A-TAGCTTCAGCTAAT-TGAGAAAGCACTAAGTGTGCGAAATTATT
*
15806200 ATAGCTTCAGTTAATTGAGAAAGCACTAAGTGTGCGAAATTATT
1 ATAGCTTCAGCTAATTGAGAAAGCACTAAGTGTGCGAAATTATT
* **
15806244 ATAGCTTCGGCTAATCT-TTAAAGCACTAAGTGT
1 ATAGCTTCAGCTAAT-TGAGAAAGCACTAAGTGT
15806277 ATGGATGTTT
Statistics
Matches: 125, Mismatches: 25, Indels: 32
0.69 0.14 0.18
Matches are distributed among these distances:
40 13 0.10
41 14 0.11
42 3 0.02
44 56 0.45
45 3 0.02
46 6 0.05
47 2 0.02
48 15 0.12
49 13 0.10
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32
Consensus pattern (44 bp):
ATAGCTTCAGCTAATTGAGAAAGCACTAAGTGTGCGAAATTATT
Found at i:15807162 original size:42 final size:42
Alignment explanation
Indices: 15807103--15807233 Score: 253
Period size: 42 Copynumber: 3.1 Consensus size: 42
15807093 ATTTTTTGTC
15807103 CACACGGGCAGAGACACGGGAGTGTGTCTCAGCCGTGTGTGA
1 CACACGGGCAGAGACACGGGAGTGTGTCTCAGCCGTGTGTGA
15807145 CACACGGGCAGAGACACGGGAGTGTGTCTCAGCCGTGTGTGA
1 CACACGGGCAGAGACACGGGAGTGTGTCTCAGCCGTGTGTGA
*
15807187 CACACGGGCAGAGACACGGGAGTGTGTCTTAGCCGTGTGTGA
1 CACACGGGCAGAGACACGGGAGTGTGTCTCAGCCGTGTGTGA
15807229 CACAC
1 CACAC
15807234 TGTCACGTTA
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 88 1.00
ACGTcount: A:0.22, C:0.24, G:0.37, T:0.17
Consensus pattern (42 bp):
CACACGGGCAGAGACACGGGAGTGTGTCTCAGCCGTGTGTGA
Found at i:15823099 original size:19 final size:20
Alignment explanation
Indices: 15823075--15823115 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
15823065 AACTCTTCAA
15823075 TTGGTCTA-GTATCGATACT
1 TTGGTCTATGTATCGATACT
*
15823094 TTGGTCTATTTTATCGATACT
1 TTGGTCTA-TGTATCGATACT
15823115 T
1 T
15823116 ACATAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
21 11 0.58
ACGTcount: A:0.20, C:0.15, G:0.17, T:0.49
Consensus pattern (20 bp):
TTGGTCTATGTATCGATACT
Found at i:15828260 original size:29 final size:29
Alignment explanation
Indices: 15828191--15828260 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
15828181 CTATCGAATT
* *
15828191 ATAAAAAGGGATGGTGACGACTATCAACA
1 ATAAAAAGGGATGGTGACGACCATCAAAA
*
15828220 ATAAAAATGGATGGTGACGACCATCGAAAA
1 ATAAAAAGGGATGGTGACGACCATC-AAAA
*
15828250 AT-GAAAGGGAT
1 ATAAAAAGGGAT
15828261 AGCTTCATCT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 30 0.86
30 5 0.14
ACGTcount: A:0.46, C:0.11, G:0.26, T:0.17
Consensus pattern (29 bp):
ATAAAAAGGGATGGTGACGACCATCAAAA
Found at i:15828326 original size:118 final size:119
Alignment explanation
Indices: 15828182--15828406 Score: 319
Period size: 118 Copynumber: 1.9 Consensus size: 119
15828172 TAGCCTCAGC
* * * *
15828182 TATCGAATTATAAAAAGGGATGGTGACGACTATCAACAATAAAAATGGATGGTGACGACCATCGA
1 TATCAAATTATAAAAAGGGATAGTGACGACCATCAACAATAAAAAGGGATGGTGACGACCATC-A
* * *
15828247 AA-AATGA-AAGGGATAGCTTCATCTATCGAATTATGAAAAGGTATAGTTTTGGT
65 AATAATGATAAGAGATAGCTTCAGCTATCGAACTATGAAAAGGTATAGTTTTGGT
* * *
15828300 TATCAAATTATGAAAAGGGATAGTGACGACCATGAACAATAAAAAGGGATGGTGATGACCATCAA
1 TATCAAATTATAAAAAGGGATAGTGACGACCATCAACAATAAAAAGGGATGGTGACGACCATCAA
* *
15828365 ATAATGATAAGAGATAGCTTCGGCTATCGAGCTATGAAAAGG
66 ATAATGATAAGAGATAGCTTCAGCTATCGAACTATGAAAAGG
15828407 GTTGGGACAA
Statistics
Matches: 93, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
117 3 0.03
118 61 0.66
119 29 0.31
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.24
Consensus pattern (119 bp):
TATCAAATTATAAAAAGGGATAGTGACGACCATCAACAATAAAAAGGGATGGTGACGACCATCAA
ATAATGATAAGAGATAGCTTCAGCTATCGAACTATGAAAAGGTATAGTTTTGGT
Found at i:15830773 original size:50 final size:49
Alignment explanation
Indices: 15830719--15830849 Score: 199
Period size: 49 Copynumber: 2.7 Consensus size: 49
15830709 GAACTACTTT
* * * *
15830719 TATTTTACATAGATTAAAATAAGGTTTTTCAATCTTTACTACACTTCATC
1 TATTTGACATTGATTAGAATAAGGTTTTTCAA-CCTTACTACACTTCATC
* *
15830769 TATTTGACATTGATGAGAATAAGGTTTTTCAACCTTAGTACACTTCATC
1 TATTTGACATTGATTAGAATAAGGTTTTTCAACCTTACTACACTTCATC
15830818 TATTTGACATTGATTAGAATAAGGTTTTTCAA
1 TATTTGACATTGATTAGAATAAGGTTTTTCAA
15830850 ACTATAAACA
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
49 46 0.62
50 28 0.38
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (49 bp):
TATTTGACATTGATTAGAATAAGGTTTTTCAACCTTACTACACTTCATC
Found at i:15838906 original size:18 final size:16
Alignment explanation
Indices: 15838880--15838919 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
15838870 GAATCCTTAT
15838880 TAAAATAAAATACAATAG
1 TAAAATAAAATA-AA-AG
*
15838898 TAAAGTAAAATAAAAG
1 TAAAATAAAATAAAAG
15838914 TAAAAT
1 TAAAAT
15838920 CCATATAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 7 0.35
17 2 0.10
18 11 0.55
ACGTcount: A:0.68, C:0.03, G:0.07, T:0.23
Consensus pattern (16 bp):
TAAAATAAAATAAAAG
Found at i:15851134 original size:31 final size:30
Alignment explanation
Indices: 15851099--15851158 Score: 102
Period size: 31 Copynumber: 2.0 Consensus size: 30
15851089 GACTCCTGTG
15851099 CAAGCTGGACGACACTATAAGACAAAAGANT
1 CAAGCTGGACGACACTATAAGACAAAAGA-T
*
15851130 CAAGCTGGACGACACTATAAGATAAAAGA
1 CAAGCTGGACGACACTATAAGACAAAAGA
15851159 GAGAAAAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.47, C:0.18, G:0.20, T:0.13
Consensus pattern (30 bp):
CAAGCTGGACGACACTATAAGACAAAAGAT
Found at i:15852236 original size:69 final size:71
Alignment explanation
Indices: 15852102--15852236 Score: 186
Period size: 72 Copynumber: 1.9 Consensus size: 71
15852092 AGCCAATTTA
* * *
15852102 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATT
15852167 TATCCTC
65 TATCCTC
* *
15852174 TCTCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTACATT
15852236 T
65 T
15852237 CATCTATATT
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
69 26 0.46
71 2 0.04
72 29 0.51
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.34
Consensus pattern (71 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATTT
ATCCTC
Found at i:15863605 original size:20 final size:21
Alignment explanation
Indices: 15863566--15863605 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
15863556 GTTATAACGA
15863566 CCACACGGGCGTATTGCCTTT
1 CCACACGGGCGTATTGCCTTT
15863587 CCACACGGGCGTA-TGCCTT
1 CCACACGGGCGTATTGCCTT
15863606 ATTTCAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.15, C:0.35, G:0.25, T:0.25
Consensus pattern (21 bp):
CCACACGGGCGTATTGCCTTT
Found at i:15866523 original size:33 final size:33
Alignment explanation
Indices: 15866470--15866536 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
15866460 AATGTTCTCT
15866470 TGTAGTTCCGTTCGAAACTTAGTCAAATTGGCC
1 TGTAGTTCCGTTCGAAACTTAGTCAAATTGGCC
* * *
15866503 TGTAGTTTCGTTTGACACTTAGTCAAATTGGCC
1 TGTAGTTCCGTTCGAAACTTAGTCAAATTGGCC
15866536 T
1 T
15866537 CAAATGTATC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.37
Consensus pattern (33 bp):
TGTAGTTCCGTTCGAAACTTAGTCAAATTGGCC
Found at i:15867406 original size:26 final size:27
Alignment explanation
Indices: 15867377--15867431 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
15867367 AAGATTGTTA
** *
15867377 AAATTCTTCTAAAGGAAACTC-AAGAG
1 AAATTCTTAAAAAGAAAACTCAAAGAG
15867403 AAATTCTTAAAAAGAAAACTCAAAGAG
1 AAATTCTTAAAAAGAAAACTCAAAGAG
15867430 AA
1 AA
15867432 TTTATTAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.55, C:0.13, G:0.13, T:0.20
Consensus pattern (27 bp):
AAATTCTTAAAAAGAAAACTCAAAGAG
Found at i:15867439 original size:27 final size:26
Alignment explanation
Indices: 15867387--15867439 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
15867377 AAATTCTTCT
* *
15867387 AAAGGAAACTCAAGAGAAATTCTTAA
1 AAAGAAAACTCAAGAGAAATTATTAA
*
15867413 AAAGAAAACTCAAAGAGAATTTATTAA
1 AAAGAAAACTC-AAGAGAAATTATTAA
15867440 CTAAAAAGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.57, C:0.09, G:0.13, T:0.21
Consensus pattern (26 bp):
AAAGAAAACTCAAGAGAAATTATTAA
Found at i:15873348 original size:25 final size:25
Alignment explanation
Indices: 15873300--15873367 Score: 84
Period size: 25 Copynumber: 2.7 Consensus size: 25
15873290 CTCCGAGTTG
*
15873300 AATAATGGTAAGCTCATCTAAGCTA
1 AATAATGGTAAGCTCATATAAGCTA
* *
15873325 AATAATGGTAAGCTCATATGAGCTG
1 AATAATGGTAAGCTCATATAAGCTA
*
15873350 AGT-ATCGGTAAGCTCATA
1 AATAAT-GGTAAGCTCATA
15873368 ATAGCTTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 2 0.05
25 36 0.95
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.28
Consensus pattern (25 bp):
AATAATGGTAAGCTCATATAAGCTA
Found at i:15878537 original size:35 final size:35
Alignment explanation
Indices: 15878489--15878647 Score: 192
Period size: 35 Copynumber: 4.5 Consensus size: 35
15878479 GTATGTACAT
15878489 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
15878524 ATGTGATGTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
15878559 ATGTGATGTTATATTGAGCTTGTATATTCGGTCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* *
15878594 ATGTGATGATATATTGTACTTGTATATTTGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* *
15878629 ATGTGAAGATATAATGAAC
1 ATGTGATGATATATTGAAC
15878648 CTTGAGTATT
Statistics
Matches: 103, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 103 1.00
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGGCCAC
Found at i:15882225 original size:22 final size:22
Alignment explanation
Indices: 15882200--15882244 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
15882190 GGACATTATA
15882200 AGTTTCTAGTTATGCCATTCAG
1 AGTTTCTAGTTATGCCATTCAG
15882222 AGTTTCTAGTTATGCCATTCAG
1 AGTTTCTAGTTATGCCATTCAG
15882244 A
1 A
15882245 CTTACTAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (22 bp):
AGTTTCTAGTTATGCCATTCAG
Found at i:15886136 original size:35 final size:35
Alignment explanation
Indices: 15886096--15886253 Score: 183
Period size: 35 Copynumber: 4.5 Consensus size: 35
15886086 GTATGTACAT
15886096 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
15886131 ATGTGATGTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * ** * *
15886166 ATGTGATGTTATATTGAGCTTGTATATTCAGTCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* *
15886201 ATGTGATGATATATTG-TCTTGTATATTTGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
*
15886235 ATGTGATGATATAATGAAC
1 ATGTGATGATATATTGAAC
15886254 CTTGAGTATT
Statistics
Matches: 101, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
34 29 0.29
35 72 0.71
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGGCCAC
Found at i:15888673 original size:15 final size:15
Alignment explanation
Indices: 15888653--15888683 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15888643 TCAGTTATCG
*
15888653 TGTTTTTGATCTACA
1 TGTTTTTGAGCTACA
15888668 TGTTTTTGAGCTACA
1 TGTTTTTGAGCTACA
15888683 T
1 T
15888684 ATTTGTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.13, G:0.16, T:0.52
Consensus pattern (15 bp):
TGTTTTTGAGCTACA
Found at i:15892568 original size:27 final size:27
Alignment explanation
Indices: 15892538--15892715 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
15892528 ATATTGAGTC
* * * *
15892538 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
15892565 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
15892592 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
15892620 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
15892647 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
15892674 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
15892701 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
15892716 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:15892677 original size:82 final size:81
Alignment explanation
Indices: 15892559--15892714 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
15892549 TGCTATATAA
* *
15892559 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
15892624 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
15892641 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
15892705 CACTTAGTGC
65 CACTTAGTGC
15892715 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:15895515 original size:57 final size:57
Alignment explanation
Indices: 15895427--15895539 Score: 199
Period size: 57 Copynumber: 2.0 Consensus size: 57
15895417 GGGAAAATCG
15895427 TTAGTAGTGGAAAGCTATGGTAGTGGAGTAGGCAACTGGGGCCGAACCACTTTAAAA
1 TTAGTAGTGGAAAGCTATGGTAGTGGAGTAGGCAACTGGGGCCGAACCACTTTAAAA
* * *
15895484 TTAGTAGTGGAAAGCTATGGTAGTGTAGTAGGCAATTTGGGCCGAACCACTTTAAA
1 TTAGTAGTGGAAAGCTATGGTAGTGGAGTAGGCAACTGGGGCCGAACCACTTTAAA
15895540 TTTCTGTGTC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (57 bp):
TTAGTAGTGGAAAGCTATGGTAGTGGAGTAGGCAACTGGGGCCGAACCACTTTAAAA
Found at i:15895560 original size:30 final size:30
Alignment explanation
Indices: 15895524--15895583 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
15895514 GGCAATTTGG
15895524 GCCGAACCACTTTAAATTTCTGTGTCAAAT
1 GCCGAACCACTTTAAATTTCTGTGTCAAAT
15895554 GCCGAACCACTTTAAATTTCTGTGTCAAAT
1 GCCGAACCACTTTAAATTTCTGTGTCAAAT
15895584 TTTTCTATCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.33
Consensus pattern (30 bp):
GCCGAACCACTTTAAATTTCTGTGTCAAAT
Found at i:15896645 original size:31 final size:31
Alignment explanation
Indices: 15896610--15896672 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
15896600 AAGAGAATAG
*
15896610 TCTACTAAGAGAGAAGAAATTGCATAAACTA
1 TCTACTAAGAGAGAAGAAATTGCACAAACTA
*
15896641 TCTACTAAGAGAGAGGAAATTGCACAAACTA
1 TCTACTAAGAGAGAAGAAATTGCACAAACTA
15896672 T
1 T
15896673 GTGGACTGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.22
Consensus pattern (31 bp):
TCTACTAAGAGAGAAGAAATTGCACAAACTA
Found at i:15899991 original size:27 final size:26
Alignment explanation
Indices: 15899947--15899998 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
15899937 CTCGCTGCAA
*
15899947 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
15899974 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
15899999 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:15902091 original size:123 final size:123
Alignment explanation
Indices: 15901864--15902109 Score: 465
Period size: 123 Copynumber: 2.0 Consensus size: 123
15901854 GTAAGTCAGT
15901864 GGCTGAGTATGAGTCTAAGTTTCTGAGACTGAGCCGGTATGCTTCTGGGATTGTCTCTACAGAGT
1 GGCTGAGTATGAGTCTAAGTTTCTGAGACTGAGCCGGTATGCTTCTGGGATTGTCTCTACAGAGT
* *
15901929 ATGAGCGTAGCGTACGCTTCGAGGATGGTCTGAGAGATGAACTTAGGGTGCTGATTGC
66 ATGAGCGTAGCGTACGCTTCGAGGATGGTATGACAGATGAACTTAGGGTGCTGATTGC
15901987 GGCTGAGTATGAGTCTAAGTTTCTGAGACTGAGCCGGTATGCTTCTGGGATTGTCTCTACAGAGT
1 GGCTGAGTATGAGTCTAAGTTTCTGAGACTGAGCCGGTATGCTTCTGGGATTGTCTCTACAGAGT
*
15902052 ATGAGCGTAGCGTACGCTTCGAGGATGGTATGACTGATGAACTTAGGGTGCTGATTGC
66 ATGAGCGTAGCGTACGCTTCGAGGATGGTATGACAGATGAACTTAGGGTGCTGATTGC
15902110 TCCGCAGAAG
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 120 1.00
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (123 bp):
GGCTGAGTATGAGTCTAAGTTTCTGAGACTGAGCCGGTATGCTTCTGGGATTGTCTCTACAGAGT
ATGAGCGTAGCGTACGCTTCGAGGATGGTATGACAGATGAACTTAGGGTGCTGATTGC
Found at i:15905294 original size:19 final size:19
Alignment explanation
Indices: 15905258--15905295 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
15905248 GTAATTGAAC
*
15905258 TTGAAAATTGGACCTGAGA
1 TTGAAAATTGGACATGAGA
*
15905277 TTGAAAATTGGGCATGAGA
1 TTGAAAATTGGACATGAGA
15905296 ATGTAAAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.08, G:0.29, T:0.26
Consensus pattern (19 bp):
TTGAAAATTGGACATGAGA
Found at i:15905705 original size:67 final size:64
Alignment explanation
Indices: 15905630--15905823 Score: 222
Period size: 67 Copynumber: 3.0 Consensus size: 64
15905620 TATTTTAATA
15905630 GATTTAATATTAAATTTAATTTAATATTTATCTTGATAGTATTTTATTAATTTAATATTAAAGTG
1 GATTTAATATTAAATTTAATTTAATATTTATCTTGATAGTATTTTATTAATTT-ATATTAAAGTG
*
15905695 GTTATTTAATATTTAATTTAATTTAATATTTATCTTG-TAGATAAATATTCTATTAATTTA-A-T
1 G--ATTTAATATTAAATTTAATTTAATATTTATCTTGATAG-T--AT-TT-TATTAATTTATATT
15905757 -AA---
59 AAAGTG
* * *
15905759 GATTTAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATAATAATTTATATTAAAGTG
1 GATTTAATATTAAATTTAATTTAATATTTATCTTGAT-AGTATTTTATTAATTTATATTAAAGTG
15905824 AATAAGTTTA
Statistics
Matches: 109, Mismatches: 5, Indels: 30
0.76 0.03 0.21
Matches are distributed among these distances:
59 9 0.08
60 2 0.02
61 3 0.03
62 34 0.31
63 2 0.02
64 3 0.03
65 1 0.01
66 3 0.03
67 36 0.33
68 1 0.01
69 3 0.03
70 3 0.03
71 9 0.08
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.51
Consensus pattern (64 bp):
GATTTAATATTAAATTTAATTTAATATTTATCTTGATAGTATTTTATTAATTTATATTAAAGTG
Done.