Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 73 of 205
Found at i:21779241 original size:13 final size:13
Alignment explanation
Indices: 21779220--21779250 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
21779210 CACGGGCGTA
*
21779220 TGGCTTGGCCATG
1 TGGCATGGCCATG
21779233 TGGCATGGCCATG
1 TGGCATGGCCATG
21779246 TGGCA
1 TGGCA
21779251 CAAGTCAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.23, G:0.39, T:0.26
Consensus pattern (13 bp):
TGGCATGGCCATG
Found at i:21781469 original size:41 final size:41
Alignment explanation
Indices: 21781408--21781558 Score: 178
Period size: 41 Copynumber: 3.7 Consensus size: 41
21781398 CATAATTTAA
21781408 CATATTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CATA-TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* * *
21781450 CATATCACCGGCACGTAGCCTGCTAGGTTTATAACCTGATT
1 CATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
** ** * **
21781491 CCGATCACCGGCACTTAGCCTGCTAGATTTATAGTCTGAAA
1 CATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* *
21781532 AAT-TCACCGGCATTTAGCCTGCTAGGC
1 CATATCACCGGCACTTAGCCTGCTAGGC
21781559 GCTTAGCCTG
Statistics
Matches: 92, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 21 0.23
41 67 0.73
42 4 0.04
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (41 bp):
CATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
Found at i:21781570 original size:40 final size:40
Alignment explanation
Indices: 21781411--21781577 Score: 117
Period size: 41 Copynumber: 4.1 Consensus size: 40
21781401 AATTTAACAT
***
21781411 ATTCACCGGCACTTAGCCTGCTAG-GCTTATAGCCTGATTC
1 ATTCACCGGCACTTAGCCTGCTAGAGC-TATAGCCTGAAAA
* * * ***
21781451 ATATCACCGGCACGTAGCCTGCTAG-GTTTATAACCTGATTCCG
1 AT-TCACCGGCACTTAGCCTGCTAGAG-CTATAGCCTGA--AAA
** *
21781494 A-TCACCGGCACTTAGCCTGCTAGATTTATAGTCTGAAAA
1 ATTCACCGGCACTTAGCCTGCTAGAGCTATAGCCTGAAAA
* *
21781533 ATTCACCGGCATTTAGCCTGCTAGGCGCT-TAGCCTGAAAA
1 ATTCACCGGCACTTAGCCTGCTA-GAGCTATAGCCTGAAAA
*
21781573 TTTCA
1 ATTCA
21781578 ATTTCACAGA
Statistics
Matches: 101, Mismatches: 19, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
39 1 0.01
40 36 0.36
41 63 0.62
43 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (40 bp):
ATTCACCGGCACTTAGCCTGCTAGAGCTATAGCCTGAAAA
Found at i:21782750 original size:64 final size:63
Alignment explanation
Indices: 21782672--21782798 Score: 245
Period size: 64 Copynumber: 2.0 Consensus size: 63
21782662 CGATCTAAAT
21782672 ATTTTCAAAATAAGATAATTTATTTATTAACACATTCAATTTAATCCAAAAACACATAATTTG
1 ATTTTCAAAATAAGATAATTTATTTATTAACACATTCAATTTAATCCAAAAACACATAATTTG
21782735 NATTTTCAAAATAAGATAATTTATTTATTAACACATTCAATTTAATCCAAAAACACATAATTTG
1 -ATTTTCAAAATAAGATAATTTATTTATTAACACATTCAATTTAATCCAAAAACACATAATTTG
21782799 GCAAATTACT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.46, C:0.13, G:0.03, T:0.38
Consensus pattern (63 bp):
ATTTTCAAAATAAGATAATTTATTTATTAACACATTCAATTTAATCCAAAAACACATAATTTG
Found at i:21782844 original size:16 final size:17
Alignment explanation
Indices: 21782823--21782855 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
21782813 TGCCCCTAAT
21782823 ATTTACACTTT-TTGCA
1 ATTTACACTTTATTGCA
*
21782839 ATTTACTCTTTATTGCA
1 ATTTACACTTTATTGCA
21782856 TAAAACATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.24, C:0.18, G:0.06, T:0.52
Consensus pattern (17 bp):
ATTTACACTTTATTGCA
Found at i:21787254 original size:12 final size:13
Alignment explanation
Indices: 21787237--21787265 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
21787227 AGGTTAGACT
21787237 TTTATTTATT-TA
1 TTTATTTATTATA
21787249 TTTATTTATTATA
1 TTTATTTATTATA
21787262 TTTA
1 TTTA
21787266 ATATTTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTATTTATTATA
Found at i:21787843 original size:49 final size:49
Alignment explanation
Indices: 21787771--21787864 Score: 152
Period size: 49 Copynumber: 1.9 Consensus size: 49
21787761 TGCTATGCAA
* * *
21787771 TGCTAAACTTGGTCTTCCACTGTCTACACTCTTATCAGTATTTATACAT
1 TGCTAAAATTAGTCTTCCACTGTCTACACTCTTATCACTATTTATACAT
*
21787820 TGCTAAAATTAGTCTTCTACTGTCTACACTCTTATCACTATTTAT
1 TGCTAAAATTAGTCTTCCACTGTCTACACTCTTATCACTATTTAT
21787865 CCCTTCTTGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.43
Consensus pattern (49 bp):
TGCTAAAATTAGTCTTCCACTGTCTACACTCTTATCACTATTTATACAT
Found at i:21789284 original size:44 final size:44
Alignment explanation
Indices: 21789233--21789319 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 44
21789223 TCATATTTCA
*
21789233 TTTCTCATCTCATAATCATTTCTTATATTTGCCATTTCAATATT
1 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATATT
* * * *
21789277 TTTCTCATCTCATATTTATTTCTCATCTTTTCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
21789320 CAATTATATC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.23, C:0.22, G:0.01, T:0.54
Consensus pattern (44 bp):
TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATATT
Found at i:21802173 original size:25 final size:25
Alignment explanation
Indices: 21802087--21802170 Score: 86
Period size: 25 Copynumber: 3.5 Consensus size: 25
21802077 TGAGCCCTTT
21802087 TCCAATTGGTTTTCGTCATTTCTAG
1 TCCAATTGGTTTTCGTCATTTCTAG
** *
21802112 TCCAATTAATTTTCGTCA--TCGAG
1 TCCAATTGGTTTTCGTCATTTCTAG
* **
21802135 T-TAA-TGGTTTTTTTCATTTCTAG
1 TCCAATTGGTTTTCGTCATTTCTAG
21802158 TCCAATTGGTTTT
1 TCCAATTGGTTTT
21802171 TTTTTTTTTG
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
21 8 0.18
22 2 0.04
23 10 0.22
24 2 0.04
25 23 0.51
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (25 bp):
TCCAATTGGTTTTCGTCATTTCTAG
Found at i:21803065 original size:202 final size:201
Alignment explanation
Indices: 21802663--21803068 Score: 548
Period size: 202 Copynumber: 2.0 Consensus size: 201
21802653 TTTTCACCCA
* * **
21802663 TCAAACATCATGGTCACCTCTCTTTCTTCCCATATCGGTTTAAAACTATCCACCCATTCTTTTAT
1 TCAAACATAATGGTCACCTCTCTTTCTTCCCATACCAATTTAAAACTATCCACCCATTCTTTTAT
* *
21802728 TTCCTTATACTACTCTTCCAAATACACTTCTGCGACCTTAGAAGCTAAAGGTCCCAAAATTGATT
66 TTCCTTATACTACTCTTCCAAATACACTTCTACGACCTTAGAAGATAAAGGTCCCAAAATTGATT
* ** * **
21802793 TTCCCAATTTTGCTGCAGCTTGAAGTACAAGTGGTTAAAATGGTGACTTTGTAATTCTTGAAGGC
131 TTCCCAATTTTCCTGCAGCTTGAAGTACAAGTGGTTAAAATGGCAACTCTACAATTCTTGAAGGC
21802858 AAAGCT
196 AAAGCT
*
21802864 TCAAACATAATGGTCACC-CTTCTTTCTTCCCATACCAATTTAAATCTAT-CAGCCCATTCTTTT
1 TCAAACATAATGGTCACCTC-TCTTTCTTCCCATACCAATTTAAAACTATCCA-CCCATTCTTTT
* * * * * *
21802927 ATTTCCTTATACTCCTCTTCCAAATATACTTCTTATGACCTTATAAGATGAAGGTCTCAAAATTG
64 ATTTCCTTATACTACTCTTCCAAATACACTTC-TACGACCTTAGAAGATAAAGGTCCCAAAATTG
* * * *
21802992 GTTTTCCC-ATTTCTCCTGTAGCTTGAAGTACAAGTGGTTAAAATGGCAACTCTACCATTCTTGC
128 ATTTTCCCAATTT-TCCTGCAGCTTGAAGTACAAGTGGTTAAAATGGCAACTCTACAATTCTTGA
21803056 AGGCAAAGCT
192 AGGCAAAGCT
21803066 TCA
1 TCA
21803069 TGCAGTATCA
Statistics
Matches: 178, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
200 3 0.02
201 87 0.49
202 88 0.49
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.35
Consensus pattern (201 bp):
TCAAACATAATGGTCACCTCTCTTTCTTCCCATACCAATTTAAAACTATCCACCCATTCTTTTAT
TTCCTTATACTACTCTTCCAAATACACTTCTACGACCTTAGAAGATAAAGGTCCCAAAATTGATT
TTCCCAATTTTCCTGCAGCTTGAAGTACAAGTGGTTAAAATGGCAACTCTACAATTCTTGAAGGC
AAAGCT
Found at i:21804430 original size:22 final size:22
Alignment explanation
Indices: 21804404--21804457 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
21804394 AATAAAATTT
21804404 AACTTACCTCTGTAAGTTATCA
1 AACTTACCTCTGTAAGTTATCA
21804426 AACTTACCTCTGTAAGTTATCA
1 AACTTACCTCTGTAAGTTATCA
21804448 AACTTACCTC
1 AACTTACCTC
21804458 AACACATTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.35
Consensus pattern (22 bp):
AACTTACCTCTGTAAGTTATCA
Found at i:21804598 original size:22 final size:22
Alignment explanation
Indices: 21804572--21804638 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 22
21804562 TGCTCTATTG
*
21804572 AACAAAGAGCACTAAAGTGCTA
1 AACAAAGAGCACTAATGTGCTA
*
21804594 TACAAAGAGCA-TGAATGTGCTA
1 AACAAAGAGCACT-AATGTGCTA
**
21804616 AACGGAGAGCACTAATGTGCTA
1 AACAAAGAGCACTAATGTGCTA
21804638 A
1 A
21804639 TAATCAGATT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 36 0.95
23 1 0.03
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.18
Consensus pattern (22 bp):
AACAAAGAGCACTAATGTGCTA
Found at i:21805064 original size:71 final size:71
Alignment explanation
Indices: 21804948--21805186 Score: 478
Period size: 71 Copynumber: 3.4 Consensus size: 71
21804938 AATTTAATCT
21804948 CCTTTATTATCTATTTACAAATATAAATATATATTTAACATTTCTATTCTAAGCAATTCCATAAT
1 CCTTTATTATCTATTTACAAATATAAATATATATTTAACATTTCTATTCTAAGCAATTCCATAAT
21805013 AGGTCC
66 AGGTCC
21805019 CCTTTATTATCTATTTACAAATATAAATATATATTTAACATTTCTATTCTAAGCAATTCCATAAT
1 CCTTTATTATCTATTTACAAATATAAATATATATTTAACATTTCTATTCTAAGCAATTCCATAAT
21805084 AGGTCC
66 AGGTCC
21805090 CCTTTATTATCTATTTACAAATATAAATATATATTTAACATTTCTATTCTAAGCAATTCCATAAT
1 CCTTTATTATCTATTTACAAATATAAATATATATTTAACATTTCTATTCTAAGCAATTCCATAAT
21805155 AGGTCC
66 AGGTCC
21805161 CCTTTATTATCTATTTACAAATATAA
1 CCTTTATTATCTATTTACAAATATAA
21805187 CCCCTCATTT
Statistics
Matches: 168, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 168 1.00
ACGTcount: A:0.37, C:0.17, G:0.04, T:0.43
Consensus pattern (71 bp):
CCTTTATTATCTATTTACAAATATAAATATATATTTAACATTTCTATTCTAAGCAATTCCATAAT
AGGTCC
Found at i:21806594 original size:16 final size:16
Alignment explanation
Indices: 21806573--21806606 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
21806563 TAAGTATAAC
21806573 TTAAAAAT-TTTTTGAT
1 TTAAAAATATTTTT-AT
21806589 TTAAAAATATTTTTAT
1 TTAAAAATATTTTTAT
21806605 TT
1 TT
21806607 GATATTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TTAAAAATATTTTTAT
Found at i:21807368 original size:8 final size:8
Alignment explanation
Indices: 21807355--21807382 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
21807345 ATGAAAAACC
21807355 AAACCCGA
1 AAACCCGA
21807363 AAACCCGA
1 AAACCCGA
21807371 AAACCCGA
1 AAACCCGA
21807379 AAAC
1 AAAC
21807383 AAAGAACCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.54, C:0.36, G:0.11, T:0.00
Consensus pattern (8 bp):
AAACCCGA
Found at i:21823852 original size:29 final size:30
Alignment explanation
Indices: 21823809--21823867 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
21823799 GAATTGGATC
* * *
21823809 AAATCAAAATTTTATGTATAAAATTGCACA
1 AAATCAAAAGTTTATATATAAAATTACACA
*
21823839 AAATC-AAAGTTTATATATACAATTACACA
1 AAATCAAAAGTTTATATATAAAATTACACA
21823868 TTAAAACATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 20 0.80
30 5 0.20
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.32
Consensus pattern (30 bp):
AAATCAAAAGTTTATATATAAAATTACACA
Found at i:21825170 original size:23 final size:23
Alignment explanation
Indices: 21825126--21825170 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
21825116 TTAATTAAAA
* * *
21825126 TAATATAGTATAACTAAAAAATG
1 TAATATAATAAAAATAAAAAATG
*
21825149 TAATATAATAAAAATAATAAAT
1 TAATATAATAAAAATAAAAAAT
21825171 TTCTCAACTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (23 bp):
TAATATAATAAAAATAAAAAATG
Found at i:21826856 original size:242 final size:242
Alignment explanation
Indices: 21826430--21826887 Score: 643
Period size: 242 Copynumber: 1.9 Consensus size: 242
21826420 ATGTTGGTAG
* * * *
21826430 AAAGAAAATCAAGGTGAAAATCGAGGGATGATAGGAGATTTGGTATCGAAATTCAAGGGGTTGGA
1 AAAGAAAATAAAGGCGAAAATCGAGGGATGATAAGAGATTTGGTATCGAAATTCAAGGGGTTGAA
* * ** * * * *
21826495 TCTTCTGGATCCCGTTTCAATATCTTGGCTGATGGAAATAAGGGAAGGAATGATACTGTGGGGAT
66 TCTTCTAGATCCCATTTCAATATCTTGGCTGATAAAAATAAAGAAAGGAATGATAATGAGGGGAT
* * *
21826560 TGGGGAAATCGATAAAGGGCAGTCGAAGGGAGTTCTAAATGGTAATAAAAGTGAAGCTATTAATT
131 TGGGGAAATCGAGAAAGGGCAATCGAAGGGACTTCTAAATGGTAATAAAAGTGAAGCTATTAATT
*
21826625 TTAGTAAAAATTCAGGATTGGGTGAGAGGGCAATAGTTGTTTCCAAC
196 TGAGTAAAAATTCAGGATTGGGTGAGAGGGCAATAGTTGTTTCCAAC
*
21826672 AAAGAAAATAAAGGCGAAAATCGAGGGATGATAA-AGGATTTGG-AGTTGAAATTCAAGGGGTTG
1 AAAGAAAATAAAGGCGAAAATCGAGGGATGATAAGA-GATTTGGTA-TCGAAATTCAAGGGGTTG
* *
21826735 AATCTTTTAGATCTCATTTCAATATCTTGGCTGATAAAAATAAAGAAAGGAATGATAATGAGGGG
64 AATCTTCTAGATCCCATTTCAATATCTTGGCTGATAAAAATAAAGAAAGGAATGATAATGAGGGG
* * * * *
21826800 ATTGGGGAAAT-TAGGAAGGAGCAATTGAAGGGACTTTTAAATGGTAATAGAAGTGAAGCTATTA
129 ATTGGGGAAATCGAGAAAGG-GCAATCGAAGGGACTTCTAAATGGTAATAAAAGTGAAGCTATTA
*
21826864 ATTTGAGTAAAAATTCAGGGTTGG
193 ATTTGAGTAAAAATTCAGGATTGG
21826888 ATAAGATGGT
Statistics
Matches: 188, Mismatches: 25, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
241 7 0.04
242 181 0.96
ACGTcount: A:0.37, C:0.08, G:0.29, T:0.27
Consensus pattern (242 bp):
AAAGAAAATAAAGGCGAAAATCGAGGGATGATAAGAGATTTGGTATCGAAATTCAAGGGGTTGAA
TCTTCTAGATCCCATTTCAATATCTTGGCTGATAAAAATAAAGAAAGGAATGATAATGAGGGGAT
TGGGGAAATCGAGAAAGGGCAATCGAAGGGACTTCTAAATGGTAATAAAAGTGAAGCTATTAATT
TGAGTAAAAATTCAGGATTGGGTGAGAGGGCAATAGTTGTTTCCAAC
Found at i:21830514 original size:5 final size:5
Alignment explanation
Indices: 21830504--21830560 Score: 55
Period size: 5 Copynumber: 11.2 Consensus size: 5
21830494 CATTTTCCTA
* *
21830504 TTTAT TTTA- TTTAT TATTAT TTTAT TTCT-T TATTAA TTCAT TTTAT
1 TTTAT TTTAT TTTAT T-TTAT TTTAT TT-TAT T-TTAT TTTAT TTTAT
21830550 TTTAT TTTAT T
1 TTTAT TTTAT T
21830561 CCTTTACTTC
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
4 4 0.09
5 31 0.72
6 8 0.19
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.74
Consensus pattern (5 bp):
TTTAT
Found at i:21832241 original size:12 final size:12
Alignment explanation
Indices: 21832208--21832241 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
21832198 ATTTTATTTG
21832208 TTTTCTTTTTAA
1 TTTTCTTTTTAA
**
21832220 TTTTAATTTTAA
1 TTTTCTTTTTAA
21832232 TTTTCTTTTT
1 TTTTCTTTTT
21832242 TTATGTTTAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTCTTTTTAA
Found at i:21838236 original size:12 final size:12
Alignment explanation
Indices: 21838219--21838243 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
21838209 GGTGTTCATT
21838219 CGGTTAACTGAC
1 CGGTTAACTGAC
21838231 CGGTTAACTGAC
1 CGGTTAACTGAC
21838243 C
1 C
21838244 TGAAATAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (12 bp):
CGGTTAACTGAC
Found at i:21838431 original size:9 final size:9
Alignment explanation
Indices: 21838403--21838459 Score: 62
Period size: 9 Copynumber: 6.4 Consensus size: 9
21838393 TTTGGTTAAA
21838403 AATTAACCG
1 AATTAACCG
21838412 AA-TAACCG
1 AATTAACCG
*
21838420 AATTACCCG
1 AATTAACCG
* *
21838429 AATTACCCT
1 AATTAACCG
21838438 AATTAACCG
1 AATTAACCG
* *
21838447 AATCAACCA
1 AATTAACCG
21838456 AATT
1 AATT
21838460 GAATCACTAC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
8 8 0.20
9 32 0.80
ACGTcount: A:0.44, C:0.26, G:0.07, T:0.23
Consensus pattern (9 bp):
AATTAACCG
Found at i:21838585 original size:18 final size:18
Alignment explanation
Indices: 21838562--21838610 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
21838552 AATTTTTATG
*
21838562 ATTGGGTTGGGATGGATA
1 ATTGGGTTGGGATGAATA
*
21838580 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGATGAATA
* *
21838598 CTTGGGTTTGGAT
1 ATTGGGTTGGGAT
21838611 TGGGTTTAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.18, C:0.02, G:0.41, T:0.39
Consensus pattern (18 bp):
ATTGGGTTGGGATGAATA
Found at i:21839904 original size:14 final size:14
Alignment explanation
Indices: 21839885--21839918 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
21839875 TTGTTTCACT
*
21839885 GAAAATGGTTTCCG
1 GAAAATGATTTCCG
*
21839899 GAAAATGATTTCTG
1 GAAAATGATTTCCG
21839913 GAAAAT
1 GAAAAT
21839919 AACTTACTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (14 bp):
GAAAATGATTTCCG
Found at i:21840234 original size:18 final size:18
Alignment explanation
Indices: 21840196--21840231 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
21840186 TTATTATTTT
*
21840196 TAAAATTTACTATTAAAA
1 TAAAATTTAATATTAAAA
21840214 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
21840232 TAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:21847660 original size:14 final size:13
Alignment explanation
Indices: 21847636--21847673 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
21847626 CAAAATGTAC
21847636 AATATAATTAAAT
1 AATATAATTAAAT
21847649 AATATAAATTAAAT
1 AATAT-AATTAAAT
*
21847663 AATTTAATTAA
1 AATATAATTAA
21847674 CTATTTACCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
AATATAATTAAAT
Found at i:21850131 original size:3 final size:3
Alignment explanation
Indices: 21850123--21850152 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
21850113 AATTGTTTAA
21850123 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
21850153 CCACTATAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:21851069 original size:125 final size:126
Alignment explanation
Indices: 21850847--21851101 Score: 377
Period size: 125 Copynumber: 2.0 Consensus size: 126
21850837 GGAGTTGGAT
* * **
21850847 TTTTTTAATTTTACTGTAAGAGAACAATAACGGGAATAGCTGCCCATCATTGCCACAATTGGTCG
1 TTTTTTAATTTTACTGTAACAGAACAATAACAGGAATAGAGGCCCATCATTGCCACAATTGGTCG
*
21850912 TTACCTGTTAAATTGCAACCGCGATCCACCGCTATTGGTGTGGTTCCGCTTC-CATCGCTA
66 TTACCCGTTAAATTGCAACCGCGATCCACCGCTATTGGTGTGGTTCCGCTTCACATCGCTA
** * ***
21850972 TTTTTTAATTTTACTGTAACAGAACAATAACAGGAATAGAGGCCTGTTATTGCTGTAATTGGTCG
1 TTTTTTAATTTTACTGTAACAGAACAATAACAGGAATAGAGGCCCATCATTGCCACAATTGGTCG
* * *
21851037 TTACCCGTTAAATTGCGACCGTGATCCACCGCTATTGGTGTGGTTCTGCTTCACATCGCTA
66 TTACCCGTTAAATTGCAACCGCGATCCACCGCTATTGGTGTGGTTCCGCTTCACATCGCTA
21851098 TTTT
1 TTTT
21851102 CAGCAATAAC
Statistics
Matches: 115, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
125 103 0.90
126 12 0.10
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.35
Consensus pattern (126 bp):
TTTTTTAATTTTACTGTAACAGAACAATAACAGGAATAGAGGCCCATCATTGCCACAATTGGTCG
TTACCCGTTAAATTGCAACCGCGATCCACCGCTATTGGTGTGGTTCCGCTTCACATCGCTA
Found at i:21852331 original size:24 final size:24
Alignment explanation
Indices: 21852304--21852378 Score: 75
Period size: 22 Copynumber: 3.2 Consensus size: 24
21852294 AAATTGGGCT
21852304 GCATTTGTACATCAAAAATTGACA
1 GCATTTGTACATCAAAAATTGACA
* * *
21852328 GCA--TATACAT-ATATAATTGGACT
1 GCATTTGTACATCA-AAAATT-GACA
*
21852351 GCATTTGTACATCAAAATTTGACA
1 GCATTTGTACATCAAAAATTGACA
21852375 GCAT
1 GCAT
21852379 ATACATTCAT
Statistics
Matches: 39, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
21 1 0.03
22 11 0.28
23 6 0.15
24 10 0.26
25 10 0.26
26 1 0.03
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (24 bp):
GCATTTGTACATCAAAAATTGACA
Found at i:21852346 original size:47 final size:47
Alignment explanation
Indices: 21852270--21852384 Score: 171
Period size: 47 Copynumber: 2.5 Consensus size: 47
21852260 ATTTTCACAC
*
21852270 CAAAATTTGGACAGCATAT--ATACAAAATTGGGCTGCATTTGTACAT
1 CAAAATTT-GACAGCATATACATACAAAATTGGACTGCATTTGTACAT
* * *
21852316 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTGTACAT
1 CAAAATTTGACAGCATATACATACAAAATTGGACTGCATTTGTACAT
21852363 CAAAATTTGACAGCATATACAT
1 CAAAATTTGACAGCATATACAT
21852385 TCATTTACTC
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
45 10 0.16
46 7 0.11
47 45 0.73
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (47 bp):
CAAAATTTGACAGCATATACATACAAAATTGGACTGCATTTGTACAT
Found at i:21852362 original size:25 final size:25
Alignment explanation
Indices: 21852293--21852367 Score: 77
Period size: 25 Copynumber: 3.1 Consensus size: 25
21852283 GCATATATAC
*
21852293 AAAATTGGGCTGCATTTGTACATCA
1 AAAATTGGACTGCATTTGTACATCA
* *
21852318 AAAATT-GACAGCA--TATACAT-A
1 AAAATTGGACTGCATTTGTACATCA
*
21852339 TATAATTGGACTGCATTTGTACATCA
1 -AAAATTGGACTGCATTTGTACATCA
21852365 AAA
1 AAA
21852368 TTTGACAGCA
Statistics
Matches: 38, Mismatches: 7, Indels: 10
0.69 0.13 0.18
Matches are distributed among these distances:
21 1 0.03
22 11 0.29
23 6 0.16
24 5 0.13
25 14 0.37
26 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.31
Consensus pattern (25 bp):
AAAATTGGACTGCATTTGTACATCA
Found at i:21852384 original size:22 final size:22
Alignment explanation
Indices: 21852270--21852384 Score: 72
Period size: 24 Copynumber: 5.0 Consensus size: 22
21852260 ATTTTCACAC
*
21852270 CAAAATTTGGACAGCATATATA-
1 CAAAATTT-GACAGCATATACAT
* * * *
21852292 CAAAATTGGGCTGCATTTGTACAT
1 CAAAATTTGACAGCA--TATACAT
*
21852316 CAAAAATTGACAGCATATACAT
1 CAAAATTTGACAGCATATACAT
* * *
21852338 -ATATAATTGGACTGCATTTGTACAT
1 CA-A-AATTTGACAGCA--TATACAT
21852363 CAAAATTTGACAGCATATACAT
1 CAAAATTTGACAGCATATACAT
21852385 TCATTTACTC
Statistics
Matches: 68, Mismatches: 17, Indels: 16
0.67 0.17 0.16
Matches are distributed among these distances:
21 6 0.09
22 20 0.29
23 13 0.19
24 21 0.31
25 7 0.10
26 1 0.01
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (22 bp):
CAAAATTTGACAGCATATACAT
Found at i:21852662 original size:14 final size:15
Alignment explanation
Indices: 21852638--21852672 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
21852628 TATATACATT
21852638 ACCATATAAATACTA
1 ACCATATAAATACTA
21852653 ACCATA-AAATACTA
1 ACCATATAAATACTA
21852667 ATCCAT
1 A-CCAT
21852673 GATTAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
ACCATATAAATACTA
Found at i:21855269 original size:91 final size:91
Alignment explanation
Indices: 21855114--21855295 Score: 364
Period size: 91 Copynumber: 2.0 Consensus size: 91
21855104 TATACACAAG
21855114 CTATAATAAGTGTTGGAATCTCTATAATTAAGGATAGAAATCTTACCTTATTACTATTAGTACTC
1 CTATAATAAGTGTTGGAATCTCTATAATTAAGGATAGAAATCTTACCTTATTACTATTAGTACTC
21855179 TTGTAAATAGAAACTAATATCAGTTA
66 TTGTAAATAGAAACTAATATCAGTTA
21855205 CTATAATAAGTGTTGGAATCTCTATAATTAAGGATAGAAATCTTACCTTATTACTATTAGTACTC
1 CTATAATAAGTGTTGGAATCTCTATAATTAAGGATAGAAATCTTACCTTATTACTATTAGTACTC
21855270 TTGTAAATAGAAACTAATATCAGTTA
66 TTGTAAATAGAAACTAATATCAGTTA
21855296 ACTGATTCTT
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.37
Consensus pattern (91 bp):
CTATAATAAGTGTTGGAATCTCTATAATTAAGGATAGAAATCTTACCTTATTACTATTAGTACTC
TTGTAAATAGAAACTAATATCAGTTA
Found at i:21859989 original size:30 final size:30
Alignment explanation
Indices: 21859939--21860030 Score: 134
Period size: 29 Copynumber: 3.1 Consensus size: 30
21859929 ATAGAAACTA
* *
21859939 ATATCAGTTAACTGTTTCTTAGGAAATTAGG
1 ATATCAATT-ACTGATTCTTAGGAAATTAGG
21859970 ATATCAATTACTGATTCTTAGGAAA--ACGG
1 ATATCAATTACTGATTCTTAGGAAATTA-GG
21859999 ATATCAATTACTGATTCTTAGGAAATTAGG
1 ATATCAATTACTGATTCTTAGGAAATTAGG
21860029 AT
1 AT
21860031 TTATTTCCTT
Statistics
Matches: 56, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
28 1 0.02
29 27 0.48
30 19 0.34
31 9 0.16
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (30 bp):
ATATCAATTACTGATTCTTAGGAAATTAGG
Found at i:21861170 original size:24 final size:24
Alignment explanation
Indices: 21861096--21861207 Score: 131
Period size: 24 Copynumber: 4.6 Consensus size: 24
21861086 GTACATGTAT
*
21861096 GCTCATACGAGCT-ATGAATCGGTAT
1 GCTCATACGAGCTGA--AATCGGTAA
21861121 GCTC-TCACGAGCTGTAAATCGGTAA
1 GCTCAT-ACGAGCTG-AAATCGGTAA
* *
21861146 GCTCATACGAGCTGAAATTGATAA
1 GCTCATACGAGCTGAAATCGGTAA
21861170 GCTC-TCACGAGCTGAAATCGGTAA
1 GCTCAT-ACGAGCTGAAATCGGTAA
21861194 GCTCATACGAGCTG
1 GCTCATACGAGCTG
21861208 TGGTGTGTCC
Statistics
Matches: 76, Mismatches: 5, Indels: 13
0.81 0.05 0.14
Matches are distributed among these distances:
23 1 0.01
24 41 0.54
25 32 0.42
26 1 0.01
27 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (24 bp):
GCTCATACGAGCTGAAATCGGTAA
Found at i:21867147 original size:86 final size:86
Alignment explanation
Indices: 21867002--21867292 Score: 582
Period size: 86 Copynumber: 3.4 Consensus size: 86
21866992 TAGTGTGGTA
21867002 AATTTTTCATCCCTGTGAAACACTATGGCAGATTTATGGCACCCAATTGGGGGCATCGCCATTTC
1 AATTTTTCATCCCTGTGAAACACTATGGCAGATTTATGGCACCCAATTGGGGGCATCGCCATTTC
21867067 TAATTTGGGTGAGATGTTGTC
66 TAATTTGGGTGAGATGTTGTC
21867088 AATTTTTCATCCCTGTGAAACACTATGGCAGATTTATGGCACCCAATTGGGGGCATCGCCATTTC
1 AATTTTTCATCCCTGTGAAACACTATGGCAGATTTATGGCACCCAATTGGGGGCATCGCCATTTC
21867153 TAATTTGGGTGAGATGTTGTC
66 TAATTTGGGTGAGATGTTGTC
21867174 AATTTTTCATCCCTGTGAAACACTATGGCAGATTTATGGCACCCAATTGGGGGCATCGCCATTTC
1 AATTTTTCATCCCTGTGAAACACTATGGCAGATTTATGGCACCCAATTGGGGGCATCGCCATTTC
21867239 TAATTTGGGTGAGATGTTGTC
66 TAATTTGGGTGAGATGTTGTC
21867260 AATTTTTCATCCCTGTGAAACACTATGGCAGAT
1 AATTTTTCATCCCTGTGAAACACTATGGCAGAT
21867293 GTTGTTGATT
Statistics
Matches: 205, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 205 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (86 bp):
AATTTTTCATCCCTGTGAAACACTATGGCAGATTTATGGCACCCAATTGGGGGCATCGCCATTTC
TAATTTGGGTGAGATGTTGTC
Found at i:21868653 original size:38 final size:40
Alignment explanation
Indices: 21868587--21868675 Score: 119
Period size: 38 Copynumber: 2.3 Consensus size: 40
21868577 TAAAATATAT
* * *
21868587 ATATATATAAGAATTTACTAATGTTTTTAATGATTTATCA
1 ATATATCTAAGAATTTACTAATGATTTTAAAGATTTATCA
21868627 ATATATCTAA-AATTTACTAAT-ATTTTAAAGATTTATCA
1 ATATATCTAAGAATTTACTAATGATTTTAAAGATTTATCA
* *
21868665 GTATTTCTAAG
1 ATATATCTAAG
21868676 CTTTTATCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
38 23 0.53
39 11 0.26
40 9 0.21
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.46
Consensus pattern (40 bp):
ATATATCTAAGAATTTACTAATGATTTTAAAGATTTATCA
Found at i:21868660 original size:19 final size:19
Alignment explanation
Indices: 21868599--21868661 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
21868589 ATATATAAGA
* *
21868599 ATTTACTAATGTTTTTAATG
1 ATTTACTAAT-ATTTTAAAG
*
21868619 ATTTA-TCAATATATCTAAA-
1 ATTTACT-AATAT-TTTAAAG
21868638 ATTTACTAATATTTTAAAG
1 ATTTACTAATATTTTAAAG
21868657 ATTTA
1 ATTTA
21868662 TCAGTATTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
18 5 0.14
19 17 0.49
20 13 0.37
ACGTcount: A:0.40, C:0.06, G:0.05, T:0.49
Consensus pattern (19 bp):
ATTTACTAATATTTTAAAG
Found at i:21868727 original size:20 final size:20
Alignment explanation
Indices: 21868612--21868745 Score: 88
Period size: 20 Copynumber: 7.0 Consensus size: 20
21868602 TACTAATGTT
*
21868612 TTTAATGATTTATCAATATA
1 TTTAAAGATTTATCAATATA
*
21868632 TCTAAA-ATTTA-CTAATAT-
1 TTTAAAGATTTATC-AATATA
*
21868650 TTTAAAGATTTATCAGTAT-
1 TTTAAAGATTTATCAATATA
*
21868669 TTCT-AAGCTTTTATCAA-A-A
1 TT-TAAAG-ATTTATCAATATA
** *
21868688 -TTAATCATTTA-CAAAAATA
1 TTTAAAGATTTATC-AATATA
21868707 TTTAAAGATTTATCAATATA
1 TTTAAAGATTTATCAATATA
* *
21868727 TATAAATATTTATCAATAT
1 TTTAAAGATTTATCAATAT
21868746 TTCTAAGACT
Statistics
Matches: 88, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
16 1 0.01
17 7 0.08
18 9 0.10
19 26 0.30
20 44 0.50
21 1 0.01
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.45
Consensus pattern (20 bp):
TTTAAAGATTTATCAATATA
Found at i:21868744 original size:10 final size:10
Alignment explanation
Indices: 21868714--21868747 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
21868704 ATATTTAAAG
21868714 ATTTATCAAT
1 ATTTATCAAT
* *
21868724 ATATATAAAT
1 ATTTATCAAT
21868734 ATTTATCAAT
1 ATTTATCAAT
21868744 ATTT
1 ATTT
21868748 CTAAGACTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (10 bp):
ATTTATCAAT
Found at i:21887007 original size:27 final size:27
Alignment explanation
Indices: 21886977--21887031 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
21886967 CAGCTCGATT
*
21886977 GTCAAAATTTTGGTTTTCCATATGCAA
1 GTCAAAATTTTAGTTTTCCATATGCAA
21887004 GTCAAAATTTTAGTTTTCCATATGCAA
1 GTCAAAATTTTAGTTTTCCATATGCAA
21887031 G
1 G
21887032 AAAACTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.40
Consensus pattern (27 bp):
GTCAAAATTTTAGTTTTCCATATGCAA
Found at i:21887042 original size:22 final size:25
Alignment explanation
Indices: 21886989--21887043 Score: 60
Period size: 27 Copynumber: 2.2 Consensus size: 25
21886979 CAAAATTTTG
*
21886989 GTTTTCCATATGCAAGTCAAAATTTTA
1 GTTTTCCATATGCAAG-CAAAA-TCTA
21887016 GTTTTCCATATGCAAG-AAAA-CTA
1 GTTTTCCATATGCAAGCAAAATCTA
*
21887039 TTTTT
1 GTTTT
21887044 GAATCGGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 6 0.23
25 4 0.15
27 16 0.62
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.42
Consensus pattern (25 bp):
GTTTTCCATATGCAAGCAAAATCTA
Found at i:21890371 original size:19 final size:19
Alignment explanation
Indices: 21890349--21890386 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
21890339 ACTTTTTTTA
21890349 TTTGGAATT-ATTTTTAATT
1 TTTGG-ATTAATTTTTAATT
*
21890368 TTTGGTTTAATTTTTAATT
1 TTTGGATTAATTTTTAATT
21890387 AGTTAGGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.24, C:0.00, G:0.11, T:0.66
Consensus pattern (19 bp):
TTTGGATTAATTTTTAATT
Found at i:21893272 original size:580 final size:574
Alignment explanation
Indices: 21891941--21893085 Score: 1529
Period size: 580 Copynumber: 2.0 Consensus size: 574
21891931 TTTAACAACC
* * * * * *** *
21891941 CATTTTCAGTGGTGTCGAAAATAGTGGTGTTGGGACCACAATTCTAACCACTAAGT-CAGTAAAT
1 CATTTTCAGTGGTCTCGAAAGTAGTAGTTTTGGGACCACAAATAGGACCACTAAGTAAAG-AAAT
* * * * ** * * * * *
21892005 ATTATTTATTTAATATTTAAAAGGTTATTAGAGTGTTCTATTAAATTTTGGTCTGGTAATGTTGA
65 ATTATTTATTTAATACTTAAAAGG-TACTAAAATGTAATATTAAAATTTAGTAT-GAAATTTTGA
** * * * * *
21892070 CGTTTGGCTAGTTAATTAAGGAAAAAAGACTAAATCGTAAAAAATTGCTAAAGCTAATCGCTATT
128 AATTT-GCTAGTTAACTAAGGAAAAAAAACGACA-CGTAAAAAATTGCAAAAGCTAATCGCTATT
* * *
21892135 AGTTTATATGGATTAAATGGGTCTAAATAAATAAGTGAATGGTTTTAAATGGAAAATATGTCATT
191 AGTTTATATGGATGAAATGGGTCTAAATAAATAAGTGAATGCTTTTAAATGGAAAATATGTCATA
* *
21892200 GTTATTTTCAATAGACGAAAATGGTGATTATTAAATTAAAATAATGTTTGAATTATAATAATTAA
256 GTTATTTCCAATAGACGAAAATGGTGATTATTAAATTAAAATAATGTTTAAATTATAATAATTAA
21892265 ACTTAAGTAAAAATAAAATAATATTCGTTAAAAACAAAACAAAAGCATCATCTTCTCTTTTCTTG
321 ACTTAAGTAAAAATAAAATAATATTCGTTAAAAACAAAACAAAAGCATCATCTTCTCTTTTCTTG
* * *
21892330 TTTTCTCCCACTGAAACATCATTGTTGAAATATCTTATAGTTTAGTCAATTGTCCTCCTTGCATG
386 TTCTCTCCCACCGAAACATCATTGTTGAAATATCTTATAGTTTACTCAATTGTCCTCCTTGCATG
* *
21892395 TAAGTTGAATTTAAGTCTGTTTTTAGTAAATTTTATGTTTTGAGATCATTGTAGCTTAATTTAGC
451 TAAGTTGAATTTAAGTCTGTTTTTAGTAAATTTTATGTTTTGAGATCATTGTAGCTTAATCTAGA
* * *
21892460 TAACCTAAGGACTATTTTGTAAAATAGTTAAAGGTTCTGAAACTTTAGTTTTAATATCT
516 TAACCCAAGGACTATTTTGTAAAATAGTTAAAGGTTCTAAAACTTTAGTATTAATATCT
* * ** * *
21892519 CATTTTCAGTGGTGTCGAAAGTAGTAGTTTTGGGACCACAATTCTGACCACTAAGTCAATAAATA
1 CATTTTCAGTGGTCTCGAAAGTAGTAGTTTTGGGACCACAAATAGGACCACTAAGTAAAGAAATA
* * * ** * * * * *
21892584 TTATTTATTTAATACTTAAAAGGTTATTAGAGTGTTCTATTAAATTTTGGTCTGGTAATTTTGAC
66 TTATTTATTTAATACTTAAAAGG-TACTAAAATGTAATATTAAAATTTAGTAT-GAAATTTTGAA
* * * *
21892649 GTTTGGCTAGTTAACTAAGGAAAAAAAAACTACATCGTAAAAAATTGGAAAAGCTAATTGCTATT
129 ATTT-GCTAGTTAACTAAGG-AAAAAAAACGACA-CGTAAAAAATTGCAAAAGCTAATCGCTATT
*
21892714 AGTTTATATGGATGAAATGGGTCTAAATGAATAAGTGAATGCTTTTAAATGGAAAATATGTCATA
191 AGTTTATATGGATGAAATGGGTCTAAATAAATAAGTGAATGCTTTTAAATGGAAAATATGTCATA
* *
21892779 GTTATTTCCAATGGACGGAAAATGGTGATTATTAAATTACAATAATGTTTAAATTATAATAATTA
256 GTTATTTCCAATAGAC-GAAAATGGTGATTATTAAATTAAAATAATGTTTAAATTATAATAATTA
* *
21892844 AACTTAAGTAAAAATAAAATAATATTTGTTAAAAACAAAACAGAAGCATCATCTTCTCTTTTCTT
320 AACTTAAGTAAAAATAAAATAATATTCGTTAAAAACAAAACAAAAGCATCATCTTCTCTTTTCTT
* *
21892909 GTTCTCTCCCACCGAAACATCCTTGTTGAAATATCTTATAGTTTACTCGATTGTCCTCCTTGCAT
385 GTTCTCTCCCACCGAAACATCATTGTTGAAATATCTTATAGTTTACTCAATTGTCCTCCTTGCAT
* *
21892974 GTAAGTTGAATTTAAGTCTGTTTTTAGTAAATTTTATATTTTTGAGATCGTTGTAGCTTAATCTA
450 GTAAGTTGAATTTAAGTCTGTTTTTAGTAAATTTTAT-GTTTTGAGATCATTGTAGCTTAATCTA
*
21893039 GATAACCCATGGACTATTTTGTAAAACT-GTTAAAGGTTCTAAAACTT
514 GATAACCCAAGGACTATTTTGTAAAA-TAGTTAAAGGTTCTAAAACTT
21893086 GTCATTAATT
Statistics
Matches: 526, Mismatches: 36, Indels: 7
0.92 0.06 0.01
Matches are distributed among these distances:
578 139 0.26
579 115 0.22
580 206 0.39
581 65 0.12
582 1 0.00
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (574 bp):
CATTTTCAGTGGTCTCGAAAGTAGTAGTTTTGGGACCACAAATAGGACCACTAAGTAAAGAAATA
TTATTTATTTAATACTTAAAAGGTACTAAAATGTAATATTAAAATTTAGTATGAAATTTTGAAAT
TTGCTAGTTAACTAAGGAAAAAAAACGACACGTAAAAAATTGCAAAAGCTAATCGCTATTAGTTT
ATATGGATGAAATGGGTCTAAATAAATAAGTGAATGCTTTTAAATGGAAAATATGTCATAGTTAT
TTCCAATAGACGAAAATGGTGATTATTAAATTAAAATAATGTTTAAATTATAATAATTAAACTTA
AGTAAAAATAAAATAATATTCGTTAAAAACAAAACAAAAGCATCATCTTCTCTTTTCTTGTTCTC
TCCCACCGAAACATCATTGTTGAAATATCTTATAGTTTACTCAATTGTCCTCCTTGCATGTAAGT
TGAATTTAAGTCTGTTTTTAGTAAATTTTATGTTTTGAGATCATTGTAGCTTAATCTAGATAACC
CAAGGACTATTTTGTAAAATAGTTAAAGGTTCTAAAACTTTAGTATTAATATCT
Found at i:21893932 original size:29 final size:29
Alignment explanation
Indices: 21893839--21893945 Score: 117
Period size: 29 Copynumber: 3.7 Consensus size: 29
21893829 GTCATTAGGG
* * *
21893839 TTTATGAGGCACTAAGTACCCATGGTTATA
1 TTTATCAGGCACTATGTACCGAT-GTTATA
* * * *
21893869 TTTATTAGGTACTTTGTACTG-TGTTATA
1 TTTATCAGGCACTATGTACCGATGTTATA
*
21893897 TTTATCAGGCACTATGTGCCGATGTTATA
1 TTTATCAGGCACTATGTACCGATGTTATA
*
21893926 TTTATCAGGTACTATGTACC
1 TTTATCAGGCACTATGTACC
21893946 TATGGTGGAT
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
28 22 0.35
29 26 0.41
30 15 0.24
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.41
Consensus pattern (29 bp):
TTTATCAGGCACTATGTACCGATGTTATA
Found at i:21905188 original size:23 final size:22
Alignment explanation
Indices: 21905164--21905236 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 22
21905154 ATTTTTAAAT
21905164 TTTAAATTATTTAGTGATAATA
1 TTTAAATTATTTAGTGATAATA
*
21905186 TTTAGAATTATTTAATGATAATA
1 TTTA-AATTATTTAGTGATAATA
21905209 TTTAAGATTATTTAGTGATAATA
1 TTTAA-ATTATTTAGTGATAATA
21905232 TTTAA
1 TTTAA
21905237 GAAAACCTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
22 5 0.11
23 42 0.89
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (22 bp):
TTTAAATTATTTAGTGATAATA
Found at i:21905189 original size:13 final size:12
Alignment explanation
Indices: 21905171--21905235 Score: 57
Period size: 13 Copynumber: 5.5 Consensus size: 12
21905161 AATTTTAAAT
21905171 TATTTAGTGATAA
1 TATTTA-TGATAA
*
21905184 TATTTA-GA-AT
1 TATTTATGATAA
21905194 TATTTAATGATAA
1 TATTT-ATGATAA
*
21905207 TATTTAAGAT--
1 TATTTATGATAA
21905217 TATTTAGTGATAA
1 TATTTA-TGATAA
21905230 TATTTA
1 TATTTA
21905236 AGAAAACCTA
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
10 12 0.29
11 6 0.14
12 6 0.14
13 18 0.43
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (12 bp):
TATTTATGATAA
Found at i:21907236 original size:24 final size:24
Alignment explanation
Indices: 21907209--21907255 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
21907199 ATTATCATGG
* *
21907209 TTTGTTCACAGTTTCATGGTTTTA
1 TTTGTCCACAATTTCATGGTTTTA
21907233 TTTGTCCACAATTTCATGGTTTT
1 TTTGTCCACAATTTCATGGTTTT
21907256 TTATTTTGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.53
Consensus pattern (24 bp):
TTTGTCCACAATTTCATGGTTTTA
Found at i:21912009 original size:106 final size:106
Alignment explanation
Indices: 21911745--21912016 Score: 264
Period size: 107 Copynumber: 2.6 Consensus size: 106
21911735 ATACCTTTGT
* * * **
21911745 TCAAAGATGAATTCTACAAGCTTTAC-CTGGATATTTAGTTCAAT-GGATAATTGTGGAGCTCGT
1 TCAAAGATGAATTCTACAAGCTTTACTC-GGAAATTTAGTTCAATAGCA-AATTATGGAGCAAGT
* * * *
21911808 TTCACCTGAACATTTAGCTCAATAGTATATTCATGTATATCTA
64 TTAACCTGAACATTTAGCTCAATAGTATATTCATATATACCAA
* * * * * *
21911851 TCCAAAGATGAATTTTACAAACTTTACAT-GGACATTAAGTTCAGTACCAAATTATGGAGCAAGT
1 T-CAAAGATGAATTCTACAAGCTTTAC-TCGGAAATTTAGTTCAATAGCAAATTATGGAGCAAGT
* * * *
21911915 TTAACCTGAACATTTAGCTCAAT-TTATGTTCATATGTCCCAAA
64 TTAACCTGAACATTTAGCTCAATAGTATATTCATATATACC-AA
* * * *
21911958 TCAAAAATGAATTCTACAAGCTATACTCAGAAATTTAGTTCAATAGTAAATTATGGAGC
1 TCAAAGATGAATTCTACAAGCTTTACTCGGAAATTTAGTTCAATAGCAAATTATGGAGC
21912017 GAGCATTTAG
Statistics
Matches: 132, Mismatches: 28, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
105 1 0.01
106 58 0.44
107 72 0.55
108 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (106 bp):
TCAAAGATGAATTCTACAAGCTTTACTCGGAAATTTAGTTCAATAGCAAATTATGGAGCAAGTTT
AACCTGAACATTTAGCTCAATAGTATATTCATATATACCAA
Found at i:21913882 original size:24 final size:24
Alignment explanation
Indices: 21913853--21913912 Score: 104
Period size: 24 Copynumber: 2.5 Consensus size: 24
21913843 AATAATTTAA
21913853 AATTGGGTTAGAAGGTTTATCTTT
1 AATTGGGTTAGAAGGTTTATCTTT
21913877 AATTGGGTTAGAAGGTTTATCTTT
1 AATTGGGTTAGAAGGTTTATCTTT
*
21913901 AATT-TGTTAGAA
1 AATTGGGTTAGAA
21913913 TAGAGAGAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
23 7 0.20
24 28 0.80
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.45
Consensus pattern (24 bp):
AATTGGGTTAGAAGGTTTATCTTT
Found at i:21923238 original size:15 final size:17
Alignment explanation
Indices: 21923218--21923252 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
21923208 GACAGAAATC
21923218 ATATATTT-TAA-AAAA
1 ATATATTTATAAGAAAA
21923233 ATATATTTATAAGAAAA
1 ATATATTTATAAGAAAA
21923250 ATA
1 ATA
21923253 GGGTACCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.44
16 3 0.17
17 7 0.39
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (17 bp):
ATATATTTATAAGAAAA
Found at i:21924122 original size:12 final size:12
Alignment explanation
Indices: 21924091--21924123 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
21924081 GTAAAATAAT
21924091 ATAAA-TTAAAA
1 ATAAATTTAAAA
21924102 ATTAAATTTAAAA
1 A-TAAATTTAAAA
21924115 ATAAATTTA
1 ATAAATTTA
21924124 TTCATAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 1 0.05
12 12 0.60
13 7 0.35
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
ATAAATTTAAAA
Found at i:21924163 original size:17 final size:16
Alignment explanation
Indices: 21924139--21924172 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
21924129 AATTAGTAAT
*
21924139 AAGTATTAATTAACAA
1 AAGTATTAAGTAACAA
21924155 AAGTAATTAAGTAACAA
1 AAGT-ATTAAGTAACAA
21924172 A
1 A
21924173 TTAAAAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (16 bp):
AAGTATTAAGTAACAA
Found at i:21926651 original size:25 final size:25
Alignment explanation
Indices: 21926620--21926707 Score: 88
Period size: 25 Copynumber: 3.5 Consensus size: 25
21926610 TATAACAAAA
* *
21926620 AAGCTCATGTGAGCTGTATAACGGG
1 AAGCTCATGAGAGCTATATAACGGG
* * * *
21926645 AAGCTCATGCGAGCCAAATATCGGG
1 AAGCTCATGAGAGCTATATAACGGG
*
21926670 AAGCTCAAGAGAGCTAT-TAATCGGG
1 AAGCTCATGAGAGCTATATAA-CGGG
*
21926695 AAACTCATGAGAG
1 AAGCTCATGAGAG
21926708 TTGTGGTGTA
Statistics
Matches: 50, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
24 2 0.04
25 48 0.96
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (25 bp):
AAGCTCATGAGAGCTATATAACGGG
Found at i:21935250 original size:14 final size:14
Alignment explanation
Indices: 21935231--21935259 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
21935221 AAAATTACCA
21935231 TATTTAATACTTGT
1 TATTTAATACTTGT
21935245 TATTTAATACTTGT
1 TATTTAATACTTGT
21935259 T
1 T
21935260 GTCATAAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.59
Consensus pattern (14 bp):
TATTTAATACTTGT
Found at i:21935951 original size:21 final size:21
Alignment explanation
Indices: 21935917--21935969 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
21935907 CGCTATTTCT
* *
21935917 AATCTCACCGCTACAGTATCC
1 AATCTCACCACTACAGTAACC
* *
21935938 AATTTCACCACTACAGTAACT
1 AATCTCACCACTACAGTAACC
21935959 AATCTCACCAC
1 AATCTCACCAC
21935970 CATCACTGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.34, C:0.36, G:0.06, T:0.25
Consensus pattern (21 bp):
AATCTCACCACTACAGTAACC
Found at i:21940559 original size:29 final size:30
Alignment explanation
Indices: 21940525--21940689 Score: 142
Period size: 29 Copynumber: 5.6 Consensus size: 30
21940515 TTAAAAAAAT
* *
21940525 AAATTGCATTTTGACCCCT-AACTTTTTTG
1 AAATTACATTTTAACCCCTAAACTTTTTTG
* * * *
21940554 GAATTGCATTTTAACCCTTAAACTTTCTTG
1 AAATTACATTTTAACCCCTAAACTTTTTTG
* * * * *
21940584 TAATTACA-TTCAACCCTTAAAATTTCTTG
1 AAATTACATTTTAACCCCTAAACTTTTTTG
21940613 AAATTACATTTTAACCCCTAAACTTTATTT-
1 AAATTACATTTTAACCCCTAAACTTT-TTTG
* * *
21940643 AAATTACATTTTGA-CCCTAAA-TTTTCATA
1 AAATTACATTTTAACCCCTAAACTTTT-TTG
*
21940672 AAATTACATTTTGACCCC
1 AAATTACATTTTAACCCC
21940690 AGAAGTTTTG
Statistics
Matches: 115, Mismatches: 15, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
27 1 0.01
28 4 0.03
29 63 0.55
30 45 0.39
31 2 0.02
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.42
Consensus pattern (30 bp):
AAATTACATTTTAACCCCTAAACTTTTTTG
Found at i:21940652 original size:59 final size:59
Alignment explanation
Indices: 21940555--21940689 Score: 157
Period size: 59 Copynumber: 2.3 Consensus size: 59
21940545 ACTTTTTTGG
* * * * *
21940555 AATTGCATTTTAACCCTTAAACTTTCTTGTAATTACA-TTCAACCCTTAAAATTTCTTGA
1 AATTACATTTTAACCCCTAAACTTTATTGTAATTACATTTCAACCC-TAAAATTTCATAA
** *
21940614 AATTACATTTTAACCCCTAAACTTTATT-TAAATTACATTTTGACCCTAAATTTTCATAA
1 AATTACATTTTAACCCCTAAACTTTATTGT-AATTACATTTCAACCCTAAAATTTCATAA
*
21940673 AATTACATTTTGACCCC
1 AATTACATTTTAACCCC
21940690 AGAAGTTTTG
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
58 1 0.02
59 58 0.89
60 6 0.09
ACGTcount: A:0.34, C:0.21, G:0.04, T:0.41
Consensus pattern (59 bp):
AATTACATTTTAACCCCTAAACTTTATTGTAATTACATTTCAACCCTAAAATTTCATAA
Found at i:21941074 original size:13 final size:12
Alignment explanation
Indices: 21941058--21941110 Score: 61
Period size: 13 Copynumber: 4.2 Consensus size: 12
21941048 AAGAAGGCAG
21941058 AAGAAGAAAAAAA
1 AAGAA-AAAAAAA
21941071 AAGAAAAAAGAAA
1 AAGAAAAAA-AAA
*
21941084 AAGAAAAATAAA
1 AAGAAAAAAAAA
*
21941096 AATAAAAAAATAA
1 AAGAAAAAAA-AA
21941109 AA
1 AA
21941111 AAATTTTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
12 15 0.43
13 20 0.57
ACGTcount: A:0.85, C:0.00, G:0.09, T:0.06
Consensus pattern (12 bp):
AAGAAAAAAAAA
Found at i:21941280 original size:9 final size:9
Alignment explanation
Indices: 21941270--21941326 Score: 51
Period size: 10 Copynumber: 5.8 Consensus size: 9
21941260 CCCAGTCCAG
*
21941270 GAAAAAAAG
1 GAAAAAAAA
21941279 GAAGGAAAAAAA
1 GAA--AAAA-AA
*
21941291 GAAAAAAAG
1 GAAAAAAAA
21941300 GAAAAAAAAA
1 G-AAAAAAAA
21941310 GAAGAAAAAA
1 GAA-AAAAAA
21941320 GAAAAAA
1 GAAAAAA
21941327 TCAAGCTCGT
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
9 11 0.28
10 21 0.52
11 4 0.10
12 4 0.10
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (9 bp):
GAAAAAAAA
Found at i:21941296 original size:21 final size:19
Alignment explanation
Indices: 21941270--21941326 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 19
21941260 CCCAGTCCAG
21941270 GAAAAAAAGGAAGGAAAAAAA
1 GAAAAAAAGGAA--AAAAAAA
21941291 GAAAAAAAGGAAAAAAAAA
1 GAAAAAAAGGAAAAAAAAA
*
21941310 GAAGAAAAAAGAAAAAA
1 GAA-AAAAAGGAAAAAA
21941327 TCAAGCTCGT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
19 10 0.29
20 12 0.35
21 12 0.35
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (19 bp):
GAAAAAAAGGAAAAAAAAA
Found at i:21941297 original size:10 final size:10
Alignment explanation
Indices: 21941284--21941326 Score: 61
Period size: 10 Copynumber: 4.4 Consensus size: 10
21941274 AAAAGGAAGG
21941284 AAAAAAAG-A
1 AAAAAAAGAA
*
21941293 AAAAAAGGAA
1 AAAAAAAGAA
21941303 AAAAAAAGAA
1 AAAAAAAGAA
*
21941313 GAAAAAAGAA
1 AAAAAAAGAA
21941323 AAAA
1 AAAA
21941327 TCAAGCTCGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
9 7 0.24
10 22 0.76
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:21941302 original size:17 final size:18
Alignment explanation
Indices: 21941280--21941326 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
21941270 GAAAAAAAGG
21941280 AAGGAAAAAAAGAA-AAA
1 AAGGAAAAAAAGAAGAAA
21941297 AAGGAAAAAAAAAGAAGAAA
1 AAGG--AAAAAAAGAAGAAA
*
21941317 AAAGAAAAAA
1 AAGGAAAAAA
21941327 TCAAGCTCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 4 0.15
18 6 0.23
19 10 0.38
20 6 0.23
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (18 bp):
AAGGAAAAAAAGAAGAAA
Found at i:21941712 original size:18 final size:18
Alignment explanation
Indices: 21941676--21941926 Score: 246
Period size: 18 Copynumber: 14.0 Consensus size: 18
21941666 ATGTAATTTA
21941676 TCAAAAATTTTCGTG-TT
1 TCAAAAATTTTCGTGTTT
21941693 TCAAAAATTTTCGTGTTT
1 TCAAAAATTTTCGTGTTT
*
21941711 TCAAAAAAATTTCCCGTG-TT
1 TC--AAAAATTT-TCGTGTTT
21941731 TCAAAAATTTTCGTGTTT
1 TCAAAAATTTTCGTGTTT
*
21941749 TAAAAAATTTTCGTGTTT
1 TCAAAAATTTTCGTGTTT
*
21941767 TCAAAAAATTTCGTG-TT
1 TCAAAAATTTTCGTGTTT
** *
21941784 TCAAAAAAATTCTTGTTT
1 TCAAAAATTTTCGTGTTT
* *
21941802 TCTAAAATTTTCCTG-TT
1 TCAAAAATTTTCGTGTTT
* *
21941819 TCAAACATTTTCATGTTT
1 TCAAAAATTTTCGTGTTT
*
21941837 TGCACAAAATTCTCGTG-TT
1 T-CA-AAAATTTTCGTGTTT
21941856 TCAAAAATTTTCGTGTTT
1 TCAAAAATTTTCGTGTTT
* ** *
21941874 TAAAAAAAATTAGTG-TT
1 TCAAAAATTTTCGTGTTT
21941891 TC-AAAATTTTCGTGTTT
1 TCAAAAATTTTCGTGTTT
* *
21941908 TAAAAAAATTCTCGTGTTT
1 T-CAAAAATTTTCGTGTTT
21941927 CAATCGGATC
Statistics
Matches: 193, Mismatches: 28, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
16 9 0.05
17 65 0.34
18 75 0.39
19 19 0.10
20 21 0.11
21 4 0.02
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.45
Consensus pattern (18 bp):
TCAAAAATTTTCGTGTTT
Found at i:21941717 original size:35 final size:35
Alignment explanation
Indices: 21941676--21941929 Score: 262
Period size: 35 Copynumber: 7.1 Consensus size: 35
21941666 ATGTAATTTA
21941676 TCAAAAATTTTCGTG-TTTCAAAAATTTTCGTGTTT
1 TCAAAAATTTTCGTGTTTTCAAAAATTTTCGTG-TT
*
21941711 TCAAAAAAATTTCCCGTG-TTTCAAAAATTTTCGTGTTT
1 TC--AAAAATTT-TCGTGTTTTCAAAAATTTTCGTG-TT
* *
21941749 TAAAAAATTTTCGTGTTTTCAAAAAATTTCGTGTT
1 TCAAAAATTTTCGTGTTTTCAAAAATTTTCGTGTT
** * * *
21941784 TCAAAAAAATTCTTGTTTTCTAAAATTTTCCTGTT
1 TCAAAAATTTTCGTGTTTTCAAAAATTTTCGTGTT
* * *
21941819 TCAAACATTTTCATGTTTTGCACAAAATTCTCGTGTT
1 TCAAAAATTTTCGTGTTTT-CA-AAAATTTTCGTGTT
* ** *
21941856 TCAAAAATTTTCGTGTTTTAAAAAAAATTAGTGTT
1 TCAAAAATTTTCGTGTTTTCAAAAATTTTCGTGTT
* *
21941891 TC-AAAATTTTCGTGTTTTAAAAAAATTCTCGTGTT
1 TCAAAAATTTTCGTGTTTT-CAAAAATTTTCGTGTT
21941926 TCAA
1 TCAA
21941930 TCGGATCATG
Statistics
Matches: 182, Mismatches: 29, Indels: 15
0.81 0.13 0.07
Matches are distributed among these distances:
34 16 0.09
35 77 0.42
36 27 0.15
37 37 0.20
38 25 0.14
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.45
Consensus pattern (35 bp):
TCAAAAATTTTCGTGTTTTCAAAAATTTTCGTGTT
Found at i:21943728 original size:10 final size:10
Alignment explanation
Indices: 21943710--21943742 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
21943700 ATATGTATCT
21943710 AAAAA-AATA
1 AAAAATAATA
21943719 AAAAATAATA
1 AAAAATAATA
*
21943729 AAAAATAAGA
1 AAAAATAATA
21943739 AAAA
1 AAAA
21943743 TATACTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 5 0.23
10 17 0.77
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (10 bp):
AAAAATAATA
Found at i:21944318 original size:11 final size:11
Alignment explanation
Indices: 21944302--21944326 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
21944292 GAAACAAGGA
21944302 AAAAAGAAAAG
1 AAAAAGAAAAG
21944313 AAAAAGAAAAG
1 AAAAAGAAAAG
21944324 AAA
1 AAA
21944327 CAGTAAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:21950089 original size:35 final size:35
Alignment explanation
Indices: 21950042--21950117 Score: 109
Period size: 35 Copynumber: 2.2 Consensus size: 35
21950032 GCAAGACGAC
* *
21950042 TTGAA-CGGGGAGTCGATTGGCGAGATTACAATAT
1 TTGAAGCGGGGAGTCGAATGGCAAGATTACAATAT
* *
21950076 TTGAAGCGTGGAGTCGAATGGCAAGATTGCAATAT
1 TTGAAGCGGGGAGTCGAATGGCAAGATTACAATAT
21950111 TTGAAGC
1 TTGAAGC
21950118 ATTCTCAGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
34 5 0.14
35 32 0.86
ACGTcount: A:0.30, C:0.12, G:0.32, T:0.26
Consensus pattern (35 bp):
TTGAAGCGGGGAGTCGAATGGCAAGATTACAATAT
Found at i:21951242 original size:79 final size:79
Alignment explanation
Indices: 21950867--21953131 Score: 2995
Period size: 79 Copynumber: 28.9 Consensus size: 79
21950857 AGCCTCGGGT
* * ** * *
21950867 TATTACGAGAGGTGAGTTGAGTCTCAAGTCACATACCGAGGTA-TT-TTTT--ATTTCTGTTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTC--TATTT
*
21950928 TTCAAAAAAAATAAACTC-
64 TTC---AAAAATCAACTCA
* *
21950946 -ATTGCGAGAGGTGAGTTGAGCCTC-GGACACATGCCGATGTATTTCTTTTAAATTT-T-TTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
* *
21951007 CAAAAATCAATTTA
66 CAAAAATCAACTCA
*
21951021 TATTGCGAGAGGTGAGTTGAGCCTC-GGACACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTA---TT
*
21951085 TTTAAAAAAAT-AACTCA
63 TTT-CAAAAATCAACTCA
* * *
21951102 TATTGCGAGAGGTGAATTGAGCCTCGGGTCACACGCTGAGGTATTT-TTTTAAATTTCTATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
*
21951166 CAAAAATCAACTTA
66 CAAAAATCAACTCA
* * * * * *
21951180 TATTGCGAGAGGTGAGTTCAGCCTCGGCTCACATACCGATGTATTTTTTTTTAATTTCTATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
*
21951245 AAAAAAAAAATCAACTCA
66 ----CAAAAATCAACTCA
* * *
21951263 TATTGCGAGAGGTGAGTTGAGCCTC-GGACACATGCCGAGATATTTCTTTTAAATTTCTGTTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
*
21951327 CAAAAAAAATCAACTTA
66 C---AAAAATCAACTCA
* * * *
21951344 TATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCTGAAGTATTT-TTTTAAATTTCTATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21951408 CAAAAATCAACTCA
66 CAAAAATCAACTCA
** * *
21951422 TATTGCGAGAGGTGAGTTGAGCCTCGACTCACATACCGATGTATTT-TTTT-AATTTCTATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTA----T
21951485 TTTTCAAAAAATCAACTCA
62 TTTTC-AAAAATCAACTCA
* * * ** *
21951504 CATTGCGATAGGTGAGTTGAGCC-CCGAACACATGCCGAGGTATTTCTTTTAAATTTTTATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21951568 CAAAAATCAACTCA
66 CAAAAATCAACTCA
** * *
21951582 TATTGCGAGAGGTGAGTTGAGCCTCGAAT-ACATGCCGAGGTATTTCTTTTAAATTTTTGTTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21951646 CAAAAATCAACTCA
66 CAAAAATCAACTCA
** * * *
21951660 TATTGTAAGAGGTGAGTTGAGCCTCGGGTCACACGCCAAGGTATTT-TTTTTAATTTCTATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21951724 CAAAATATCAACTCA
66 CAAAA-ATCAACTCA
* * * * * *
21951739 TATTGCGAGAGGTGAGTTAAGCCTCGGGTCGCACGCCGAGG-A-AT-TTTTCAA-TT-TGTTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21951799 CAAAAATCAACTCA
66 CAAAAATCAACTCA
*
21951813 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTCTTTTAAATTTCTATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21951878 CAAAAATCAACTCA
66 CAAAAATCAACTCA
*
21951892 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTCTTTTAAATTTCTATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21951957 CAAAAATCAACTCA
66 CAAAAATCAACTCA
*
21951971 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTCTTTTAAATTTCTATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21952036 CAAAAATCAACTCA
66 CAAAAATCAACTCA
*
21952050 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTCTTTTAAATTTCTATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21952115 CAAAAATCAACTCA
66 CAAAAATCAACTCA
*
21952129 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTCTTTTAAATTTCTATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21952194 CAAAAATCAACTCA
66 CAAAAATCAACTCA
*
21952208 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTCTTTTAAATTTCTATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21952273 CAAAAATCAACTCA
66 CAAAAATCAACTCA
*
21952287 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTCTTTTAAATTTCTATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21952352 CAAAAATCAACTCA
66 CAAAAATCAACTCA
*
21952366 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTCTTTTAAATTTCTATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21952431 CAAAAATCAACTCA
66 CAAAAATCAACTCA
*
21952445 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTCTTTTAAATTTCTATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21952510 CAAAAATCAACTCA
66 CAAAAATCAACTCA
* *
21952524 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGATATTT-TTTT-AATTTCTATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21952587 CAAAAAAATCAACTCA
66 C--AAAAATCAACTCA
* * * ** * * **
21952603 TATTGCAAGAGGTGAGTTAAGCCTCGAGTCACCCGCCGAGGTA--T-TTTTCAATTTATGGTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21952665 CAAAAATCAACTCA
66 CAAAAATCAACTCA
* *
21952679 TATTGTGAGAGGTGAATTGAGCCTCGGAG--ACATGCCGAGGTATTTCTTTTAAATTTCTATTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGG-GTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTT
21952742 TCAAAAATCAACTCA
65 TCAAAAATCAACTCA
* * * * *
21952757 TA--GCAAGATGTGAGTTGAGCCTCGGGTCACATGCCAAGGTATTT-TTTT-AATTTTTGTTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21952818 CAAAAAATCAACTCA
66 C-AAAAATCAACTCA
* * * *
21952833 TATTGCGAGAGGTGAATTGAGCCTCGGGTCACACGCAGAGGTA--T-TTTTCAA-TT-TATTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
*
21952893 TAAAAATCAACTCA
66 CAAAAATCAACTCA
* *
21952907 TATTGCGAGAGGCGAGTTGAGCCTCGGGTCACATGCCGAGGTATTT-TTTTAAAATTTCTGTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTT-AAATTTCTATTTT
21952971 TCAAAAATCAACTC-
65 TCAAAAATCAACTCA
* ** * * **
21952985 TATTGCGAGAGGTGAGTTAAGGTTCGGG-CTATATGCCGAGGTATTT-TTTAAAAAAAT-TATTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTC-ACATGCCGAGGTATTTCTTT-TAAATTTCTATTT
21953047 TTCAAAAATCAACTCA
64 TTCAAAAATCAACTCA
* * * * * * *
21953063 TATTGCGAGAGGTGAGTTAAGCTTCAGGTCGCACGCCGAGGTA-TT-TTTTCAATTTCTGTTTTT
1 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
21953126 CAAAAA
66 CAAAAA
21953132 AGAAAAAGGA
Statistics
Matches: 1969, Mismatches: 156, Indels: 124
0.88 0.07 0.06
Matches are distributed among these distances:
74 107 0.05
75 42 0.02
76 145 0.07
77 124 0.06
78 421 0.21
79 853 0.43
81 127 0.06
82 107 0.05
83 43 0.02
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.36
Consensus pattern (79 bp):
TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAATTTCTATTTTT
CAAAAATCAACTCA
Found at i:21953384 original size:30 final size:30
Alignment explanation
Indices: 21953314--21953478 Score: 183
Period size: 30 Copynumber: 5.6 Consensus size: 30
21953304 GTTTTTAAAA
* *
21953314 AAATTACATTTTGA-CCCTTAACTTTTTTG
1 AAATTACATTTTGACCCCTAAACTTTCTTG
* * * *
21953343 GAATTGCATTTTAACCCCTAAAATTTCTTG
1 AAATTACATTTTGACCCCTAAACTTTCTTG
* * * *
21953373 AAATTATATTTTAACCCTTAAACTTTTTTG
1 AAATTACATTTTGACCCCTAAACTTTCTTG
* *
21953403 AAATTATATTTTGACCCCTAAACTTT-TTT
1 AAATTACATTTTGACCCCTAAACTTTCTTG
* *
21953432 AAATTACATTTTGA-CCCTAAATTTTCTTA
1 AAATTACATTTTGACCCCTAAACTTTCTTG
21953461 AAATTACATTTTGACCCC
1 AAATTACATTTTGACCCC
21953479 ATAAGTTTTG
Statistics
Matches: 115, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
28 10 0.09
29 42 0.37
30 63 0.55
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.45
Consensus pattern (30 bp):
AAATTACATTTTGACCCCTAAACTTTCTTG
Found at i:21953390 original size:59 final size:59
Alignment explanation
Indices: 21953314--21953478 Score: 201
Period size: 59 Copynumber: 2.8 Consensus size: 59
21953304 GTTTTTAAAA
* *
21953314 AAATTACATTTTGACCCTT-AACTTTTTTGGAATTGCATTTTAACCCCTAAAATTTCTTG
1 AAATTACATTTTGACCCTTAAACTTTTTTGAAATTACATTTTAACCCCTAAAATTT-TTG
* * * * * *
21953373 AAATTATATTTTAACCCTTAAACTTTTTTGAAATTATATTTTGACCCCTAAACTTTTTT
1 AAATTACATTTTGACCCTTAAACTTTTTTGAAATTACATTTTAACCCCTAAAATTTTTG
* *
21953432 AAATTACATTTTGACCC-TAAA-TTTTCTTAAAATTACATTTTGACCCC
1 AAATTACATTTTGACCCTTAAACTTTT-TTGAAATTACATTTTAACCCC
21953479 ATAAGTTTTG
Statistics
Matches: 92, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
57 4 0.04
58 23 0.25
59 34 0.37
60 31 0.34
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.45
Consensus pattern (59 bp):
AAATTACATTTTGACCCTTAAACTTTTTTGAAATTACATTTTAACCCCTAAAATTTTTG
Found at i:21953749 original size:20 final size:20
Alignment explanation
Indices: 21953710--21953762 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
21953700 CAACAGCAAA
*
21953710 AAGAA-AGAGGAAAAAAGAG
1 AAGAAGAGAGGAGAAAAGAG
*
21953729 -AGAAAGAGAGGAGAAAGGAG
1 AAG-AAGAGAGGAGAAAAGAG
21953749 AAGAAGAGAAGGAG
1 AAGAAGAG-AGGAG
21953763 GAGAAGACGG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 2 0.07
19 2 0.07
20 17 0.61
21 7 0.25
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (20 bp):
AAGAAGAGAGGAGAAAAGAG
Found at i:21953993 original size:12 final size:12
Alignment explanation
Indices: 21953976--21954020 Score: 65
Period size: 12 Copynumber: 3.8 Consensus size: 12
21953966 CAGGCCCAAC
*
21953976 AGAAAAAAGAAG
1 AGAAAAAAAAAG
21953988 AGAAAAAAAAAG
1 AGAAAAAAAAAG
21954000 -GAAAAAAAAAAG
1 AG-AAAAAAAAAG
21954012 AGAAAAAAA
1 AGAAAAAAA
21954021 GCCCAAAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
11 1 0.03
12 28 0.93
13 1 0.03
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (12 bp):
AGAAAAAAAAAG
Found at i:21954003 original size:11 final size:11
Alignment explanation
Indices: 21953977--21954021 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
21953967 AGGCCCAACA
*
21953977 GAAAAAAGAAG
1 GAAAAAAAAAG
21953988 AGAAAAAAAAAG
1 -GAAAAAAAAAG
*
21954000 GAAAAAAAAAA
1 GAAAAAAAAAG
*
21954011 GAGAAAAAAAG
1 GAAAAAAAAAG
21954022 CCCAAAAGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
11 19 0.66
12 10 0.34
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (11 bp):
GAAAAAAAAAG
Found at i:21954596 original size:18 final size:17
Alignment explanation
Indices: 21954558--21954744 Score: 167
Period size: 17 Copynumber: 10.4 Consensus size: 17
21954548 ATGTAATTTA
21954558 TCAAAAATTTTCGTGTT
1 TCAAAAATTTTCGTGTT
* *
21954575 TCAAAATTTTTCGTTTTT
1 TCAAAAATTTTCG-TGTT
*
21954593 TCAAAAAAATTTCCCGTGTT
1 TC--AAAAATTT-TCGTGTT
*
21954613 TCAAAAGTTTTCGTGTTT
1 TCAAAAATTTTCGTG-TT
*
21954631 TCAAAAAAATTTCGTGTT
1 TC-AAAAATTTTCGTGTT
** *
21954649 TCAAAAAAATTCTTGTT
1 TCAAAAATTTTCGTGTT
21954666 CTCAAAAATTTTCGTGTT
1 -TCAAAAATTTTCGTGTT
*
21954684 TCAAACATTTTCGTGTTT
1 TCAAAAATTTTCGTG-TT
* *
21954702 TGCAAAAAATTCTCATGTT
1 T-C-AAAAATTTTCGTGTT
*
21954721 TCAAAAATTTCCGTGTT
1 TCAAAAATTTTCGTGTT
*
21954738 TTAAAAA
1 TCAAAAA
21954745 AAAATAGTGT
Statistics
Matches: 138, Mismatches: 22, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
17 61 0.44
18 38 0.28
19 15 0.11
20 22 0.16
21 2 0.01
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.44
Consensus pattern (17 bp):
TCAAAAATTTTCGTGTT
Found at i:21954605 original size:19 final size:18
Alignment explanation
Indices: 21954560--21954794 Score: 141
Period size: 19 Copynumber: 13.1 Consensus size: 18
21954550 GTAATTTATC
*
21954560 AAAAATTTTCGTGTTTC-
1 AAAAAATTTCGTGTTTCA
** *
21954577 AAAATTTTTCGTTTTTTCA
1 AAAAAATTTCG-TGTTTCA
21954596 AAAAAATTTCCCGTGTTTC-
1 AAAAAATTT--CGTGTTTCA
**
21954615 AAAAGTTTTCGTGTTTTCA
1 AAAAAATTTCGTG-TTTCA
21954634 AAAAAATTTCGTGTTTCA
1 AAAAAATTTCGTGTTTCA
*
21954652 AAAAAA-TTCTTGTTCTC-
1 AAAAAATTTCGTGTT-TCA
*
21954669 AAAAATTTTCGTGTTTC-
1 AAAAAATTTCGTGTTTCA
* *
21954686 AAACATTTTCGTGTTTTGC-
1 AAAAAATTTCGTG-TTT-CA
*
21954705 AAAAAATTCTCATGTTTC-
1 AAAAAATT-TCGTGTTTCA
*
21954723 -AAAAATTTCCGTGTTTTA
1 AAAAAATTT-CGTGTTTCA
** *
21954741 AAAAAAAATAGTGTTTC-
1 AAAAAATTTCGTGTTTCA
* *
21954758 --AAATTTTCTGTGTTTAA
1 AAAAAATTTC-GTGTTTCA
21954775 AAAAAATTCTCGTGTTTCA
1 AAAAAATT-TCGTGTTTCA
21954794 A
1 A
21954795 TCGGATCACG
Statistics
Matches: 170, Mismatches: 29, Indels: 36
0.72 0.12 0.15
Matches are distributed among these distances:
15 4 0.02
16 7 0.04
17 53 0.31
18 39 0.23
19 54 0.32
20 11 0.06
21 2 0.01
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (18 bp):
AAAAAATTTCGTGTTTCA
Found at i:21955972 original size:22 final size:22
Alignment explanation
Indices: 21955881--21955965 Score: 93
Period size: 21 Copynumber: 4.0 Consensus size: 22
21955871 GAAAACAGTA
* *
21955881 GTTTCTCCCCTCGTTCTTGTTG
1 GTTTCTCCCCTCGTTTTTGCTG
* * *
21955903 GTTTCT-CCCTTGTTCTTACTG
1 GTTTCTCCCCTCGTTTTTGCTG
*
21955924 GTTTGT-CCCTCGTTTTTGCTG
1 GTTTCTCCCCTCGTTTTTGCTG
*
21955945 GTTTCTCCCCTCTTTTTTGCT
1 GTTTCTCCCCTCGTTTTTGCT
21955966 TTATTCTTGG
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
21 34 0.64
22 19 0.36
ACGTcount: A:0.01, C:0.29, G:0.16, T:0.53
Consensus pattern (22 bp):
GTTTCTCCCCTCGTTTTTGCTG
Found at i:21959291 original size:60 final size:59
Alignment explanation
Indices: 21959114--21959963 Score: 1427
Period size: 60 Copynumber: 14.1 Consensus size: 59
21959104 CATTGTATTT
*
21959114 GTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAATATATATATGTA
1 GTGTATTTTAAAAAT-AAAAAATATATATAGTGTATTTTAAAAATAAAAA-A-ATATATGTA
* *
21959176 GTGCATTTTAAAAATAAATATATATATATGTAGTGTATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAATAAA-A-A-ATATATATAGTGTATTTTAAAAATAAAAAAATATATGTA
* * *
21959237 GTGTACTTTAAAAATAAAAAAAATATATGTAGTGTATTTTAAAAAT-AAAAAATATATATA
1 GTGTATTTTAAAAAT--AAAAAATATATATAGTGTATTTTAAAAATAAAAAAATATATGTA
*
21959297 GTGTATTTTAAAAATAAAAAAAATATATGTAGTGTATTTTAAAAAT-AAAAAATATATGTA
1 GTGTATTTTAAAAAT--AAAAAATATATATAGTGTATTTTAAAAATAAAAAAATATATGTA
21959357 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAATAAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAAT-AAAAAAATATATGTA
21959417 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAATAAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAAT-AAAAAAATATATGTA
21959477 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAATAAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAAT-AAAAAAATATATGTA
21959537 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAATAAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAAT-AAAAAAATATATGTA
21959597 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAATAAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAAT-AAAAAAATATATGTA
21959657 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAATAAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAAT-AAAAAAATATATGTA
21959717 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAATAAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAAT-AAAAAAATATATGTA
21959777 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAATAAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAAT-AAAAAAATATATGTA
21959837 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAATAAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAAT-AAAAAAATATATGTA
*
21959897 GTGTATTTTAAAAATAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAAT-AAAAAAATATATGTA
21959957 GTGTATT
1 GTGTATT
21959964 CGGTTTATTC
Statistics
Matches: 773, Mismatches: 8, Indels: 16
0.97 0.01 0.02
Matches are distributed among these distances:
58 28 0.04
60 670 0.87
61 26 0.03
62 17 0.02
63 8 0.01
64 24 0.03
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (59 bp):
GTGTATTTTAAAAATAAAAAATATATATAGTGTATTTTAAAAATAAAAAAATATATGTA
Found at i:21960319 original size:39 final size:39
Alignment explanation
Indices: 21960276--21960356 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
21960266 ACTACAGTGA
21960276 AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
1 AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
21960315 AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
1 AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
21960354 AAA
1 AAA
21960357 TCGATTGCAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (39 bp):
AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
Found at i:21966061 original size:97 final size:99
Alignment explanation
Indices: 21965951--21966131 Score: 260
Period size: 100 Copynumber: 1.8 Consensus size: 99
21965941 TGAACAATCA
*
21965951 AAATGTATGTTTTA-AATTTTTTTAATATAATTAGTTATATTAGTAGT-AGTTCAGTATTAAAGC
1 AAATGTATATTTTATAATTTTTTTAATATAATTAGTTATATTAGTA-TCAGTTCAGTATTAAAGC
21966014 ATGTTATTT-TGTTAAAATCCCCCAAAATCAAAAG
65 ATGTTATTTGTGTTAAAATCCCCCAAAATCAAAAG
* * * *
21966048 AAATGTATATTTTATTTTATTTTTTTAGTATAATTAGTTATATTAGTATCAGTTTAGTATTAAGG
1 AAATGTATATTTTA--TAATTTTTTTAATATAATTAGTTATATTAGTATCAGTTCAGTATTAAAG
*
21966113 TATGTTATTTGTGTTAAAA
64 CATGTTATTTGTGTTAAAA
21966132 GGTTAGTACT
Statistics
Matches: 73, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
97 13 0.18
99 1 0.01
100 51 0.70
101 8 0.11
ACGTcount: A:0.35, C:0.05, G:0.12, T:0.48
Consensus pattern (99 bp):
AAATGTATATTTTATAATTTTTTTAATATAATTAGTTATATTAGTATCAGTTCAGTATTAAAGCA
TGTTATTTGTGTTAAAATCCCCCAAAATCAAAAG
Found at i:21969951 original size:12 final size:12
Alignment explanation
Indices: 21969934--21970012 Score: 56
Period size: 12 Copynumber: 6.6 Consensus size: 12
21969924 TTGTGTTTGT
*
21969934 GGTGGAGGTGGA
1 GGTGGAGGAGGA
21969946 GGTGGAGGAGGA
1 GGTGGAGGAGGA
**
21969958 GG-GG-GGTTTGA
1 GGTGGAGG-AGGA
* *
21969969 GGAAGAAGGAGGA
1 GG-TGGAGGAGGA
21969982 GGGTGGAGGAGGA
1 -GGTGGAGGAGGA
*
21969995 GGAGGAGGAGG-
1 GGTGGAGGAGGA
21970006 GGTGGAG
1 GGTGGAG
21970013 AGGCGTTTGA
Statistics
Matches: 52, Mismatches: 10, Indels: 11
0.71 0.14 0.15
Matches are distributed among these distances:
10 2 0.04
11 12 0.23
12 23 0.44
13 11 0.21
14 4 0.08
ACGTcount: A:0.24, C:0.00, G:0.66, T:0.10
Consensus pattern (12 bp):
GGTGGAGGAGGA
Found at i:21975904 original size:38 final size:38
Alignment explanation
Indices: 21975853--21975930 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
21975843 TTTAACAAAC
21975853 TAAAACCCATGGCTTTGGTTTGACGACGATGATGATGA
1 TAAAACCCATGGCTTTGGTTTGACGACGATGATGATGA
*
21975891 TAAAACCCATGGCTTTGGTTTGACGATGATGATGATGA
1 TAAAACCCATGGCTTTGGTTTGACGACGATGATGATGA
21975929 TA
1 TA
21975931 TTACCTAGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (38 bp):
TAAAACCCATGGCTTTGGTTTGACGACGATGATGATGA
Found at i:21983144 original size:6 final size:6
Alignment explanation
Indices: 21983133--21983158 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
21983123 AGTTTTTCCA
21983133 ATATTC ATATTC ATATTC ATATTC AT
1 ATATTC ATATTC ATATTC ATATTC AT
21983159 TTGCTTCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (6 bp):
ATATTC
Found at i:22000467 original size:24 final size:22
Alignment explanation
Indices: 22000440--22000483 Score: 52
Period size: 23 Copynumber: 1.9 Consensus size: 22
22000430 TTCCAACTTA
*
22000440 ATTCATTTTAAAAACTCCATATCT
1 ATTC-TTTCAAAAACT-CATATCT
*
22000464 ATTCTTTCAATAACTCATAT
1 ATTCTTTCAAAAACTCATAT
22000484 AACTGCTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 5 0.28
23 9 0.50
24 4 0.22
ACGTcount: A:0.36, C:0.20, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTCTTTCAAAAACTCATATCT
Found at i:22001288 original size:18 final size:18
Alignment explanation
Indices: 22001267--22001301 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22001257 TAATATTATA
22001267 AAATAAAATAATTATTTC
1 AAATAAAATAATTATTTC
* *
22001285 AAATATAATTATTATTT
1 AAATAAAATAATTATTT
22001302 TTATATGTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
AAATAAAATAATTATTTC
Found at i:22006232 original size:15 final size:16
Alignment explanation
Indices: 22006212--22006241 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
22006202 GTAATATCTT
22006212 AATTTTACAT-CAATA
1 AATTTTACATACAATA
22006227 AATTTTACATACAAT
1 AATTTTACATACAAT
22006242 TGATTATTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (16 bp):
AATTTTACATACAATA
Found at i:22006310 original size:38 final size:40
Alignment explanation
Indices: 22006267--22006352 Score: 108
Period size: 38 Copynumber: 2.2 Consensus size: 40
22006257 AAATTATAAT
22006267 TATAATTATCACAA-TT-T-TTTTACTAAT-AATTTTTTAAA
1 TATAATTATCACAACTTCTATTTTAC--ATCAATTTTTTAAA
*
22006305 TATAATTATCACAACTTCTATTTTACATCAATTTTTTAAC
1 TATAATTATCACAACTTCTATTTTACATCAATTTTTTAAA
22006345 TAATAATT
1 T-ATAATT
22006353 TTAAATTAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
38 14 0.33
39 4 0.10
40 12 0.29
41 12 0.29
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (40 bp):
TATAATTATCACAACTTCTATTTTACATCAATTTTTTAAA
Found at i:22024021 original size:2 final size:2
Alignment explanation
Indices: 22024014--22024042 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
22024004 TTGTGGACAT
22024014 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
22024043 GTAACATNNN
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:22049289 original size:19 final size:19
Alignment explanation
Indices: 22049218--22049290 Score: 60
Period size: 19 Copynumber: 3.7 Consensus size: 19
22049208 ATATATATAA
*
22049218 ATTTTTAAGAATTTACTAAT
1 ATTTTAAAG-ATTTACTAAT
* *
22049238 GTTTTTAATGATTTA-TCAAT
1 -ATTTTAAAGATTTACT-AAT
*
22049258 ATATCTAAA-ATTTACTAAT
1 AT-TTTAAAGATTTACTAAT
22049277 ATTTTAAAGATTTA
1 ATTTTAAAGATTTA
22049291 TCAGTATTTC
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
18 5 0.12
19 17 0.41
20 13 0.32
21 6 0.15
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.49
Consensus pattern (19 bp):
ATTTTAAAGATTTACTAAT
Found at i:22049289 original size:38 final size:39
Alignment explanation
Indices: 22049227--22049303 Score: 111
Period size: 38 Copynumber: 2.0 Consensus size: 39
22049217 AATTTTTAAG
* *
22049227 AATTTACTAATGTTTTTAATGATTTATCAATATATCTAA
1 AATTTACTAATGATTTTAAAGATTTATCAATATATCTAA
* *
22049266 AATTTACTAAT-ATTTTAAAGATTTATCAGTATTTCTAA
1 AATTTACTAATGATTTTAAAGATTTATCAATATATCTAA
22049304 GCTTTTATCA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
38 23 0.68
39 11 0.32
ACGTcount: A:0.39, C:0.08, G:0.05, T:0.48
Consensus pattern (39 bp):
AATTTACTAATGATTTTAAAGATTTATCAATATATCTAA
Found at i:22049356 original size:20 final size:20
Alignment explanation
Indices: 22049241--22049374 Score: 88
Period size: 20 Copynumber: 7.0 Consensus size: 20
22049231 TACTAATGTT
*
22049241 TTTAATGATTTATCAATATA
1 TTTAAAGATTTATCAATATA
*
22049261 TCTAAA-ATTTA-CTAATAT-
1 TTTAAAGATTTATC-AATATA
*
22049279 TTTAAAGATTTATCAGTAT-
1 TTTAAAGATTTATCAATATA
*
22049298 TTCT-AAGCTTTTATCAA-A-A
1 TT-TAAAG-ATTTATCAATATA
** *
22049317 -TTAATCATTTA-CAAAAATA
1 TTTAAAGATTTATC-AATATA
22049336 TTTAAAGATTTATCAATATA
1 TTTAAAGATTTATCAATATA
* *
22049356 TATAAATATTTATCAATAT
1 TTTAAAGATTTATCAATAT
22049375 TTCTAAGACT
Statistics
Matches: 88, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
16 1 0.01
17 7 0.08
18 9 0.10
19 26 0.30
20 44 0.50
21 1 0.01
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.45
Consensus pattern (20 bp):
TTTAAAGATTTATCAATATA
Found at i:22049373 original size:10 final size:10
Alignment explanation
Indices: 22049343--22049376 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
22049333 ATATTTAAAG
22049343 ATTTATCAAT
1 ATTTATCAAT
* *
22049353 ATATATAAAT
1 ATTTATCAAT
22049363 ATTTATCAAT
1 ATTTATCAAT
22049373 ATTT
1 ATTT
22049377 CTAAGACTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (10 bp):
ATTTATCAAT
Found at i:22063767 original size:29 final size:29
Alignment explanation
Indices: 22063734--22063791 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
22063724 CGGTAGTTGA
*
22063734 GTCCGTCATTAAGCTTGGTCTAGGGAAAG
1 GTCCGTCATCAAGCTTGGTCTAGGGAAAG
**
22063763 GTCCGTGGTCAAGCTTGGTCTAGGGAAAG
1 GTCCGTCATCAAGCTTGGTCTAGGGAAAG
22063792 ATAAGCTTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.26
Consensus pattern (29 bp):
GTCCGTCATCAAGCTTGGTCTAGGGAAAG
Found at i:22065530 original size:23 final size:24
Alignment explanation
Indices: 22065501--22065546 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
22065491 AAAAAAGGTT
22065501 AAAATTTCA-AAAAAATAAAAATA
1 AAAATTTCACAAAAAATAAAAATA
*
22065524 AAAATTTCACAAAATATAAAAAT
1 AAAATTTCACAAAAAATAAAAAT
22065547 TCACAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.24
Consensus pattern (24 bp):
AAAATTTCACAAAAAATAAAAATA
Found at i:22065544 original size:18 final size:17
Alignment explanation
Indices: 22065517--22065557 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
22065507 TCAAAAAAAT
22065517 AAAA-ATAAAAATTTCAC
1 AAAATATAAAAA-TTCAC
22065534 AAAATATAAAAATTCAC
1 AAAATATAAAAATTCAC
22065551 AAAATAT
1 AAAATAT
22065558 TTAGAAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.70
18 7 0.30
ACGTcount: A:0.66, C:0.10, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAATATAAAAATTCAC
Found at i:22065938 original size:26 final size:27
Alignment explanation
Indices: 22065904--22065961 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
22065894 AAACTAAGTT
* *
22065904 TTTTTTAATTTTTAAAAT-TTTTTCAA
1 TTTTTTAATTTATAAAATCTTTTTAAA
*
22065930 TTTTTTAATTTATATAATCTTTTTAAA
1 TTTTTTAATTTATAAAATCTTTTTAAA
22065957 TTTTT
1 TTTTT
22065962 AAGGTTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 16 0.57
27 12 0.43
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.67
Consensus pattern (27 bp):
TTTTTTAATTTATAAAATCTTTTTAAA
Found at i:22068573 original size:9 final size:9
Alignment explanation
Indices: 22068559--22068587 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
22068549 TTTCAAATCA
22068559 CAACCAATT
1 CAACCAATT
22068568 CAACCAATT
1 CAACCAATT
22068577 CAACCAATT
1 CAACCAATT
22068586 CA
1 CA
22068588 TTTCACATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (9 bp):
CAACCAATT
Found at i:22069247 original size:45 final size:44
Alignment explanation
Indices: 22069188--22069347 Score: 194
Period size: 45 Copynumber: 3.4 Consensus size: 44
22069178 ACACCAGTAT
*
22069188 ACAGTAATCAGTAACAGTAACAGTATTCAACACACAAAGTGCTGA
1 ACAGTAA-CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGA
* *
22069233 ACCTGTAACAGTAACAGTAACAGTATTCGACACATAAAGTGCCGAGTCGGTA
1 A-CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTG-C---T--G-A
*
22069285 ACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGA
1 ACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGA
22069329 ATCAGTAACAGTAACAGTA
1 A-CAGTAACAGTAACAGTA
22069348 GTCGGCACAT
Statistics
Matches: 100, Mismatches: 6, Indels: 18
0.81 0.05 0.15
Matches are distributed among these distances:
44 2 0.02
45 50 0.50
46 6 0.06
49 1 0.01
50 1 0.01
51 38 0.38
52 2 0.02
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (44 bp):
ACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGA
Found at i:22069292 original size:51 final size:49
Alignment explanation
Indices: 22069188--22069347 Score: 204
Period size: 51 Copynumber: 3.2 Consensus size: 49
22069178 ACACCAGTAT
*
22069188 ACAGTAATCAGTAACAGTAACAGTATTCAACACACAAAGTG-C--T-G-A
1 ACAGTAA-CAGTAACAGTAACAGTATTCGACACACAAAGTGCCGATCGTA
* *
22069233 ACCTGTAACAGTAACAGTAACAGTATTCGACACATAAAGTGCCGAGTCGGTA
1 A-CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGA-TC-GTA
22069285 ACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCAGTA
1 ACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCG-ATC-GTA
22069336 ACAGTAACAGTA
1 ACAGTAACAGTA
22069348 GTCGGCACAT
Statistics
Matches: 100, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
45 32 0.32
46 6 0.06
49 1 0.01
51 58 0.58
52 3 0.03
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (49 bp):
ACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGATCGTA
Found at i:22069293 original size:6 final size:6
Alignment explanation
Indices: 22069282--22069308 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
22069272 TGCCGAGTCG
22069282 GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTA
22069309 TTCGACACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:22069635 original size:39 final size:40
Alignment explanation
Indices: 22069551--22069636 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 40
22069541 TTCTTTACTT
* * * *
22069551 CAGTAATTTCACAATTCAATGCATTATGCATAACAATATT
1 CAGTATTTTCACAATTCAATGCATAATGCAAAACAATATC
*
22069591 CAGTATTTTCACAATTCACT-CAGTAAT-CAAAACAATATC
1 CAGTATTTTCACAATTCAATGCA-TAATGCAAAACAATATC
22069630 CAGTATT
1 CAGTATT
22069637 CCATAATTCG
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
39 19 0.47
40 21 0.52
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.34
Consensus pattern (40 bp):
CAGTATTTTCACAATTCAATGCATAATGCAAAACAATATC
Found at i:22072607 original size:9 final size:9
Alignment explanation
Indices: 22072593--22072618 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
22072583 TTTCAAGCCA
22072593 AAGCCAGAT
1 AAGCCAGAT
22072602 AAGCCAGAT
1 AAGCCAGAT
22072611 AAGCCAGA
1 AAGCCAGA
22072619 AGAGCTAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.23, G:0.23, T:0.08
Consensus pattern (9 bp):
AAGCCAGAT
Found at i:22074933 original size:20 final size:20
Alignment explanation
Indices: 22074908--22074950 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
22074898 AAATGCTAGT
22074908 GAACCAACACTGTATGTCAA
1 GAACCAACACTGTATGTCAA
22074928 GAACCAACACTGTATGTCAA
1 GAACCAACACTGTATGTCAA
22074948 GAA
1 GAA
22074951 GAATCAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.23, G:0.16, T:0.19
Consensus pattern (20 bp):
GAACCAACACTGTATGTCAA
Found at i:22096582 original size:24 final size:24
Alignment explanation
Indices: 22096549--22096599 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
22096539 TCCTTTCTGT
*
22096549 TTTTGCTTTGGTTCTTCTGTC-TTG
1 TTTTGCTTTGGTTCCTC-GTCTTTG
* *
22096573 TTTTGTTTTGTTTCCTCGTCTTTG
1 TTTTGCTTTGGTTCCTCGTCTTTG
22096597 TTT
1 TTT
22096600 GCTGCCAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.00, C:0.16, G:0.18, T:0.67
Consensus pattern (24 bp):
TTTTGCTTTGGTTCCTCGTCTTTG
Found at i:22098090 original size:16 final size:15
Alignment explanation
Indices: 22098071--22098104 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
22098061 TATAAATATT
22098071 ATATTTAATTTTTTAA
1 ATATTTAA-TTTTTAA
*
22098087 ATATTTTATTTTTAA
1 ATATTTAATTTTTAA
22098102 ATA
1 ATA
22098105 CATTAATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
ATATTTAATTTTTAA
Found at i:22098101 original size:23 final size:22
Alignment explanation
Indices: 22098044--22098097 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
22098034 TTACATGTTT
* *
22098044 AATATT-TAATTAGTTTTTATA
1 AATATTATATTTAATTTTTATA
22098065 AATATTATATTTAATTTTT-TA
1 AATATTATATTTAATTTTTATA
*
22098086 AATATTTTATTT
1 AATATTATATTT
22098098 TTAAATACAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 19 0.66
22 10 0.34
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
AATATTATATTTAATTTTTATA
Found at i:22098809 original size:19 final size:20
Alignment explanation
Indices: 22098759--22098810 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
22098749 TGATGTTTGT
22098759 GATATTTTTAATTATTTAATTA
1 GATA-TTTT-ATTATTTAATTA
**
22098781 GATA-AATATTATTTAATTA
1 GATATTTTATTATTTAATTA
22098800 -ATATTTTATTA
1 GATATTTTATTA
22098811 AGATTTTTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
18 3 0.12
19 17 0.68
20 1 0.04
22 4 0.16
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (20 bp):
GATATTTTATTATTTAATTA
Found at i:22107563 original size:21 final size:22
Alignment explanation
Indices: 22107511--22107564 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
22107501 TTACATGTTT
* *
22107511 AATA-TTTAATTAGTTTTTTTA
1 AATATTTTATTTAGTTTTTATA
*
22107532 AATATTATATTTAG-TTTTATA
1 AATATTTTATTTAGTTTTTATA
22107553 AATATTTTATTT
1 AATATTTTATTT
22107565 TTAAATACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 21 0.75
22 7 0.25
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (22 bp):
AATATTTTATTTAGTTTTTATA
Found at i:22116390 original size:21 final size:22
Alignment explanation
Indices: 22116338--22116391 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
22116328 TTACATGTTT
* *
22116338 AATA-TTTAATTAGTTTTTTTA
1 AATATTTTATTTAGTTTTTATA
*
22116359 AATATTATATTTAG-TTTTATA
1 AATATTTTATTTAGTTTTTATA
22116380 AATATTTTATTT
1 AATATTTTATTT
22116392 TTAAATACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 21 0.75
22 7 0.25
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (22 bp):
AATATTTTATTTAGTTTTTATA
Found at i:22125139 original size:25 final size:25
Alignment explanation
Indices: 22125089--22125139 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
22125079 TATAAATACT
* *
22125089 AAATCCCTAAATAAAAGATTTCAAA
1 AAATCCCTAAATAAAAAATATCAAA
22125114 AAATCCCTAAATAAAATAATAT-AAA
1 AAATCCCTAAATAAAA-AATATCAAA
22125139 A
1 A
22125140 TATCTTAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 20 0.87
26 3 0.13
ACGTcount: A:0.61, C:0.14, G:0.02, T:0.24
Consensus pattern (25 bp):
AAATCCCTAAATAAAAAATATCAAA
Found at i:22125832 original size:16 final size:15
Alignment explanation
Indices: 22125802--22125833 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
22125792 AAACGAAAAC
22125802 AAAAAGGAAAGAAAG
1 AAAAAGGAAAGAAAG
22125817 AAAAAGAGAAAGAAAG
1 AAAAAG-GAAAGAAAG
22125833 A
1 A
22125834 CGCAAAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (15 bp):
AAAAAGGAAAGAAAG
Found at i:22126624 original size:7 final size:7
Alignment explanation
Indices: 22126612--22126651 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
22126602 TATCGAGTTG
22126612 ATTGAAT
1 ATTGAAT
22126619 ATTGAAT
1 ATTGAAT
22126626 ATTGAAT
1 ATTGAAT
22126633 ATTGAAT
1 ATTGAAT
22126640 ATTGAAT
1 ATTGAAT
22126647 ATTGA
1 ATTGA
22126652 GTCGGATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (7 bp):
ATTGAAT
Found at i:22127237 original size:17 final size:17
Alignment explanation
Indices: 22127187--22127225 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
22127177 GTGGATTTTA
* *
22127187 AATATTCAATTGTGTTT
1 AATATTTAATTGTGTCT
22127204 AATATTTAATTGTGTCT
1 AATATTTAATTGTGTCT
22127221 AATAT
1 AATAT
22127226 ATTATTTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.51
Consensus pattern (17 bp):
AATATTTAATTGTGTCT
Found at i:22127643 original size:13 final size:13
Alignment explanation
Indices: 22127625--22127650 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22127615 TGAATGATGT
22127625 TTTGATAATATAA
1 TTTGATAATATAA
22127638 TTTGATAATATAA
1 TTTGATAATATAA
22127651 AGTACCAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
TTTGATAATATAA
Found at i:22132833 original size:17 final size:18
Alignment explanation
Indices: 22132811--22132844 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22132801 ACAGTTGTAA
22132811 TTTAAAT-TCTAATTATT
1 TTTAAATGTCTAATTATT
*
22132828 TTTAAATGTGTAATTAT
1 TTTAAATGTCTAATTAT
22132845 CACAACTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTAAATGTCTAATTATT
Found at i:22132885 original size:18 final size:17
Alignment explanation
Indices: 22132856--22132889 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
22132846 ACAACTTCTA
22132856 TTAAATTATAATTATTT
1 TTAAATTATAATTATTT
22132873 TTAAATCTATAATTATT
1 TTAAAT-TATAATTATT
22132890 GTAACTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
TTAAATTATAATTATTT
Found at i:22135433 original size:32 final size:32
Alignment explanation
Indices: 22135373--22135433 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
22135363 TAAATTTATA
* *
22135373 ATTTTGAAAAATAATTAAGAGAATAAAATAAT
1 ATTTTAAAAAATAATAAAGAGAATAAAATAAT
*
22135405 ATTTTAAAAAATAATGAAAGTGAA-AAAAT
1 ATTTTAAAAAATAAT-AAAGAGAATAAAAT
22135434 GGTAAATCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
32 19 0.76
33 6 0.24
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.30
Consensus pattern (32 bp):
ATTTTAAAAAATAATAAAGAGAATAAAATAAT
Found at i:22143211 original size:41 final size:41
Alignment explanation
Indices: 22143154--22143597 Score: 567
Period size: 41 Copynumber: 10.8 Consensus size: 41
22143144 TTTTTTAAAC
* *
22143154 CTTTAGCGGCGTTTTTGTGTAAGCGCCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTCTAGGCGCCGCTAATGCTCGGAT
*
22143195 CTTTAGCGGCGTTTTTGTCTAGGTGCCGCTAATGCTC-GAGT
1 CTTTAGCGGCGTTTTTGTCTAGGCGCCGCTAATGCTCGGA-T
* *
22143236 CTTTAGCGGCGTTTTCGTGTAGGCGCCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTCTAGGCGCCGCTAATGCTCGGAT
*
22143277 CTTTAGCGGCGTTTTTGTCTAGGTGCCGCTAATGCTC-GAGT
1 CTTTAGCGGCGTTTTTGTCTAGGCGCCGCTAATGCTCGGA-T
* *
22143318 CTTTAGCGGCGTTTTCGTGTAGGCGCCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTCTAGGCGCCGCTAATGCTCGGAT
*
22143359 CTTTAGCGGCGTTTTTGTCTAGGTGCCGCTAATGCTC-GAGT
1 CTTTAGCGGCGTTTTTGTCTAGGCGCCGCTAATGCTCGGA-T
* *
22143400 CTTTAGCGGCGTTTTCGTGTAGGCGCCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTCTAGGCGCCGCTAATGCTCGGAT
* *
22143441 CTTTAGCGGCGTTTTTGTCTATGCGCCTCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTCTAGGCGCCGCTAATGCTCGGAT
* * *
22143482 CTTTAGCGGCGTTTTTATAC-AAGCGCCGCTAATACTCGGAT
1 CTTTAGCGGCGTTTTTGT-CTAGGCGCCGCTAATGCTCGGAT
* ** * * *
22143523 CTTTAACGGCGTTTTTAACT-GAGCGCCACTAATTCTCTTG-T
1 CTTTAGCGGCGTTTTTGTCTAG-GCGCCGCTAATGCTC-GGAT
* * *
22143564 CTTCAGCGGCGTTTGTGTCTAAGCGCCGCTAATG
1 CTTTAGCGGCGTTTTTGTCTAGGCGCCGCTAATG
22143598 TATTGACCTT
Statistics
Matches: 352, Mismatches: 40, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
40 7 0.02
41 337 0.96
42 8 0.02
ACGTcount: A:0.14, C:0.24, G:0.28, T:0.34
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGTCTAGGCGCCGCTAATGCTCGGAT
Found at i:22143291 original size:82 final size:82
Alignment explanation
Indices: 22143154--22143538 Score: 646
Period size: 82 Copynumber: 4.7 Consensus size: 82
22143144 TTTTTTAAAC
* *
22143154 CTTTAGCGGCGTTTTTGTGTAAGCGCCGCTAATGCTCGGATCTTTAGCGGCGTTTTTGTCTAGGT
1 CTTTAGCGGCGTTTTCGTGTAGGCGCCGCTAATGCTCGGATCTTTAGCGGCGTTTTTGTCTAGGT
22143219 GCCGCTAATGCTCGAGT
66 GCCGCTAATGCTCGAGT
22143236 CTTTAGCGGCGTTTTCGTGTAGGCGCCGCTAATGCTCGGATCTTTAGCGGCGTTTTTGTCTAGGT
1 CTTTAGCGGCGTTTTCGTGTAGGCGCCGCTAATGCTCGGATCTTTAGCGGCGTTTTTGTCTAGGT
22143301 GCCGCTAATGCTCGAGT
66 GCCGCTAATGCTCGAGT
22143318 CTTTAGCGGCGTTTTCGTGTAGGCGCCGCTAATGCTCGGATCTTTAGCGGCGTTTTTGTCTAGGT
1 CTTTAGCGGCGTTTTCGTGTAGGCGCCGCTAATGCTCGGATCTTTAGCGGCGTTTTTGTCTAGGT
22143383 GCCGCTAATGCTCGAGT
66 GCCGCTAATGCTCGAGT
* *
22143400 CTTTAGCGGCGTTTTCGTGTAGGCGCCGCTAATGCTCGGATCTTTAGCGGCGTTTTTGTCTATGC
1 CTTTAGCGGCGTTTTCGTGTAGGCGCCGCTAATGCTCGGATCTTTAGCGGCGTTTTTGTCTAGGT
*
22143465 GCCTCTAATGCTCG-GAT
66 GCCGCTAATGCTCGAG-T
** ** * * *
22143482 CTTTAGCGGCGTTTTTATACAAGCGCCGCTAATACTCGGATCTTTAACGGCGTTTTT
1 CTTTAGCGGCGTTTTCGTGTAGGCGCCGCTAATGCTCGGATCTTTAGCGGCGTTTTT
22143539 AACTGAGCGC
Statistics
Matches: 290, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
81 1 0.00
82 289 1.00
ACGTcount: A:0.14, C:0.23, G:0.28, T:0.35
Consensus pattern (82 bp):
CTTTAGCGGCGTTTTCGTGTAGGCGCCGCTAATGCTCGGATCTTTAGCGGCGTTTTTGTCTAGGT
GCCGCTAATGCTCGAGT
Done.