Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 75 of 205
Found at i:22421290 original size:28 final size:28
Alignment explanation
Indices: 22421258--22421323 Score: 125
Period size: 28 Copynumber: 2.4 Consensus size: 28
22421248 ATAATAATGT
22421258 TAAAAA-ATATCATAAAATTTTTAAAAA
1 TAAAAATATATCATAAAATTTTTAAAAA
22421285 TAAAAATATATCATAAAATTTTTAAAAA
1 TAAAAATATATCATAAAATTTTTAAAAA
22421313 TAAAAATATAT
1 TAAAAATATAT
22421324 ATATAATAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 6 0.16
28 32 0.84
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (28 bp):
TAAAAATATATCATAAAATTTTTAAAAA
Found at i:22421430 original size:33 final size:32
Alignment explanation
Indices: 22421350--22421430 Score: 74
Period size: 33 Copynumber: 2.4 Consensus size: 32
22421340 AAAAAATTAT
* * *
22421350 AAAATATAGAAAATTATAAATATTATTATAGATG
1 AAAA-ATA-AAAATTATAAATAATATTAAAAATG
22421384 AAAAATAATAAATTATAAA-AATATTAAAAATTG
1 AAAAATAA-AAATTATAAATAATATTAAAAA-TG
*
22421417 AAAAAGTTAAAATT
1 AAAAA-TAAAAATT
22421431 CTTAAGATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
32 9 0.22
33 25 0.62
34 6 0.15
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (32 bp):
AAAAATAAAAATTATAAATAATATTAAAAATG
Found at i:22421577 original size:18 final size:19
Alignment explanation
Indices: 22421526--22421580 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 19
22421516 TGAAAAAAAT
*
22421526 AAAAATTATTAAAA-TAATG
1 AAAAA-TATAAAAATTAATG
* *
22421545 AAAATTATATAAATTAA-G
1 AAAAATATAAAAATTAATG
22421563 AAAAATATAAAAATTAAT
1 AAAAATATAAAAATTAAT
22421581 ATTGATTTCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
18 22 0.76
19 7 0.24
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (19 bp):
AAAAATATAAAAATTAATG
Found at i:22423812 original size:14 final size:14
Alignment explanation
Indices: 22423789--22423836 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
22423779 AAAAATGTGA
*
22423789 TTGTTAGAATATGG
1 TTGTTGGAATATGG
* *
22423803 TTGTTGGAATCTGA
1 TTGTTGGAATATGG
* *
22423817 TTGTTGCAATAGGG
1 TTGTTGGAATATGG
22423831 TTGTTG
1 TTGTTG
22423837 AATTTTTTGG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.21, C:0.04, G:0.31, T:0.44
Consensus pattern (14 bp):
TTGTTGGAATATGG
Found at i:22428949 original size:18 final size:18
Alignment explanation
Indices: 22428926--22428960 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
22428916 AAATACAAAG
22428926 GACTTGATAAGTGATTTA
1 GACTTGATAAGTGATTTA
22428944 GACTTGATAAGTGATTT
1 GACTTGATAAGTGATTT
22428961 TGTTGCTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.40
Consensus pattern (18 bp):
GACTTGATAAGTGATTTA
Found at i:22438798 original size:116 final size:116
Alignment explanation
Indices: 22438594--22438813 Score: 316
Period size: 116 Copynumber: 1.9 Consensus size: 116
22438584 TTATTTCTTC
** *
22438594 TTTCTTTGATTTATGTTTGCTATACTGTTGTTCAATCACTGTGTTCTAGGTTCCGTAACCCCTAC
1 TTTCTTTGATTTATGTTCACTATACTGTTGTTCAATCACTGTGTTCTAGGTTCCATAACCCCTAC
22438659 TCGGACTGTGGTGGGTAAGTATTCTAGAAGTTTTATGCAGTTGGGAATCAT
66 TCGGACTGTGGTGGGTAAGTATTCTAGAAGTTTTATGCAGTTGGGAATCAT
* * * * * **
22438710 TTTCTTTGATTTATGTTCATTATACTGTTGTTCAATCACTGTGTTTTGGGTTTCATAATCCCTGT
1 TTTCTTTGATTTATGTTCACTATACTGTTGTTCAATCACTGTGTTCTAGGTTCCATAACCCCTAC
* *
22438775 TCAGG-CTGTGGTGGGTAAGTATTCTTGAAGTTTTGTGCA
66 TC-GGACTGTGGTGGGTAAGTATTCTAGAAGTTTTATGCA
22438814 ACTAGTAATT
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
116 89 0.98
117 2 0.02
ACGTcount: A:0.19, C:0.15, G:0.22, T:0.44
Consensus pattern (116 bp):
TTTCTTTGATTTATGTTCACTATACTGTTGTTCAATCACTGTGTTCTAGGTTCCATAACCCCTAC
TCGGACTGTGGTGGGTAAGTATTCTAGAAGTTTTATGCAGTTGGGAATCAT
Found at i:22438994 original size:16 final size:16
Alignment explanation
Indices: 22438973--22439004 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22438963 TAAGTATGTG
22438973 GATTGGGGTTTTGATA
1 GATTGGGGTTTTGATA
*
22438989 GATTGGTGTTTTGATA
1 GATTGGGGTTTTGATA
22439005 CTTGGAATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.34, T:0.47
Consensus pattern (16 bp):
GATTGGGGTTTTGATA
Found at i:22445607 original size:45 final size:45
Alignment explanation
Indices: 22445487--22445610 Score: 158
Period size: 45 Copynumber: 2.8 Consensus size: 45
22445477 ATTCAAACGT
* * * *
22445487 GTAAGACCATAGCTGAAAGATATTGTGGCACCATGTCAGAAATGA
1 GTAAGACCATAGCTGAAAGATACTATGGCATCATATCAGAAATGA
* * * *
22445532 ATAAGACCATCGTTGAAAGACACTATGGCATCATATCAGAAATGA
1 GTAAGACCATAGCTGAAAGATACTATGGCATCATATCAGAAATGA
* *
22445577 GTAAGACCATGGCTGAAAGATGCTATGGCATCAT
1 GTAAGACCATAGCTGAAAGATACTATGGCATCAT
22445611 GGTAAATGGG
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 66 1.00
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.23
Consensus pattern (45 bp):
GTAAGACCATAGCTGAAAGATACTATGGCATCATATCAGAAATGA
Found at i:22450824 original size:28 final size:28
Alignment explanation
Indices: 22450793--22450846 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
22450783 TGGTCATTAA
22450793 AATCTAACCATTACAATATGACCGTTGG
1 AATCTAACCATTACAATATGACCGTTGG
* * * *
22450821 AATCTGACCGTTGCAATATGGCCGTT
1 AATCTAACCATTACAATATGACCGTT
22450847 TAATTTTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (28 bp):
AATCTAACCATTACAATATGACCGTTGG
Found at i:22450845 original size:14 final size:14
Alignment explanation
Indices: 22450806--22450846 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
22450796 CTAACCATTA
22450806 CAATATGACCGTTG
1 CAATATGACCGTTG
* *
22450820 GAATCTGACCGTTG
1 CAATATGACCGTTG
*
22450834 CAATATGGCCGTT
1 CAATATGACCGTT
22450847 TAATTTTTTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (14 bp):
CAATATGACCGTTG
Found at i:22464258 original size:11 final size:11
Alignment explanation
Indices: 22464242--22464271 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
22464232 TCTTTATAGC
*
22464242 TTTTTAGAATT
1 TTTTTAAAATT
22464253 TTTTTAAAATT
1 TTTTTAAAATT
22464264 TTTTTAAA
1 TTTTTAAA
22464272 TATATAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (11 bp):
TTTTTAAAATT
Found at i:22464335 original size:20 final size:20
Alignment explanation
Indices: 22464264--22464350 Score: 88
Period size: 20 Copynumber: 4.2 Consensus size: 20
22464254 TTTTAAAATT
22464264 TTTTTAAATATATAAATTTTAGAA
1 TTTTTAAA-A-AT-AATTTT-GAA
* *
22464288 TTTTCACAAAT-ATTTT-AA
1 TTTTTAAAAATAATTTTGAA
*
22464306 ATTTTAAAAATAATTTTGAA
1 TTTTTAAAAATAATTTTGAA
*
22464326 TTTTTTAAAATAATTTTGAA
1 TTTTTAAAAATAATTTTGAA
22464346 TTTTT
1 TTTTT
22464351 CTTTTTGTAA
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
18 10 0.19
19 5 0.09
20 30 0.56
22 2 0.04
23 1 0.02
24 6 0.11
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.53
Consensus pattern (20 bp):
TTTTTAAAAATAATTTTGAA
Found at i:22467116 original size:10 final size:10
Alignment explanation
Indices: 22467083--22467154 Score: 53
Period size: 10 Copynumber: 7.3 Consensus size: 10
22467073 AATTATATTT
*
22467083 TTTTCTATACA
1 TTTT-TATATA
22467094 TTTTTATGA-A
1 TTTTTAT-ATA
22467104 TTTTTATATA
1 TTTTTATATA
*
22467114 TTTATT-TCTA
1 TTT-TTATATA
22467124 TTTTTATATA
1 TTTTTATATA
22467134 -TTTTA-ATA
1 TTTTTATATA
* *
22467142 TGTGTATATA
1 TTTTTATATA
22467152 TTT
1 TTT
22467155 AACAAAAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
8 3 0.06
9 11 0.22
10 29 0.58
11 7 0.14
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.64
Consensus pattern (10 bp):
TTTTTATATA
Found at i:22468020 original size:16 final size:16
Alignment explanation
Indices: 22467996--22468028 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
22467986 AATAATAAAC
*
22467996 AACTTATTTAAATATT
1 AACTAATTTAAATATT
22468012 AACTAATTTAAATATT
1 AACTAATTTAAATATT
22468028 A
1 A
22468029 TTCAAATGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (16 bp):
AACTAATTTAAATATT
Found at i:22473761 original size:23 final size:24
Alignment explanation
Indices: 22473710--22473764 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
22473700 TTGAGATAAT
* *
22473710 TATATTATATTTAAATTTTTAAAA
1 TATATTAAATTCAAATTTTTAAAA
* *
22473734 AATATTAAATTCAAA-TTTTAGAA
1 TATATTAAATTCAAATTTTTAAAA
22473757 TATATTAA
1 TATATTAA
22473765 TAATATTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 14 0.54
24 12 0.46
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (24 bp):
TATATTAAATTCAAATTTTTAAAA
Found at i:22474540 original size:17 final size:17
Alignment explanation
Indices: 22474528--22474566 Score: 60
Period size: 19 Copynumber: 2.2 Consensus size: 17
22474518 ATAGAAATTT
22474528 AAAAATTAAAGAAAGTA
1 AAAAATTAAAGAAAGTA
22474545 AAAAATTAAATAGAAAGTA
1 AAAAATT-AA-AGAAAGTA
22474564 AAA
1 AAA
22474567 GTAATTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 7 0.35
18 2 0.10
19 11 0.55
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAAATTAAAGAAAGTA
Found at i:22474561 original size:19 final size:18
Alignment explanation
Indices: 22474516--22474566 Score: 68
Period size: 17 Copynumber: 2.8 Consensus size: 18
22474506 ATTTGACAAA
* *
22474516 TAATAGAAATTTAAAAAT
1 TAATAGAAAGTAAAAAAT
22474534 TAA-AGAAAGTAAAAAAT
1 TAATAGAAAGTAAAAAAT
22474551 TAAATAGAAAGTAAAA
1 T-AATAGAAAGTAAAA
22474567 GTAATTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 13 0.45
18 5 0.17
19 11 0.38
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.24
Consensus pattern (18 bp):
TAATAGAAAGTAAAAAAT
Found at i:22475243 original size:3 final size:3
Alignment explanation
Indices: 22475235--22475263 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
22475225 TATAATATCC
22475235 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
22475264 GCTGATAACG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:22476027 original size:78 final size:74
Alignment explanation
Indices: 22475891--22476034 Score: 177
Period size: 78 Copynumber: 1.9 Consensus size: 74
22475881 GGTTTATTAA
*
22475891 ATTAGGGTTTTGGTGTTTTATTTAATTTTAAGTGTTTATTAATTGGTGTTTTAAGGTTTTAGAAA
1 ATTAGGGTTTTGGTGTTTTATTTAATTTTAAGTGTTTATAAATTGGTGTTTTAAGGTTTT-GAAA
22475956 AATGGTTATT
65 AATGGTTATT
* *
22475966 ATTAGGGTTTTGG-GTTTTATTGTTAGGATTTTTAGTGTTTATAAATTAGG-G-TTTAGGGGTTT
1 ATTAGGGTTTTGGTGTTTTA-T-TTA--ATTTTAAGTGTTTATAAATT-GGTGTTTTA-AGGTTT
22476028 TGAAAAA
60 TGAAAAA
22476035 AAATTGATGA
Statistics
Matches: 60, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
74 6 0.10
75 14 0.23
76 3 0.05
77 10 0.17
78 25 0.42
79 2 0.03
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (74 bp):
ATTAGGGTTTTGGTGTTTTATTTAATTTTAAGTGTTTATAAATTGGTGTTTTAAGGTTTTGAAAA
ATGGTTATT
Found at i:22476052 original size:26 final size:27
Alignment explanation
Indices: 22476022--22476089 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 27
22476012 TAGGGTTTAG
**
22476022 GGGTTTTGAAAAAAA-ATTGATGAGAT
1 GGGTTTTGAAAAAAATATTGACAAGAT
* *
22476048 GGGTTCTGAAAAATAATTTTGACAAGAT
1 GGGTTTTGAAAAA-AATATTGACAAGAT
22476076 GGGTTTTGAAAAAA
1 GGGTTTTGAAAAAA
22476090 TATCCCTACA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 12 0.34
27 3 0.09
28 20 0.57
ACGTcount: A:0.41, C:0.03, G:0.25, T:0.31
Consensus pattern (27 bp):
GGGTTTTGAAAAAAATATTGACAAGAT
Found at i:22492340 original size:16 final size:16
Alignment explanation
Indices: 22492319--22492349 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
22492309 CCAAACCTTG
22492319 TCGGCATTAAGTTATA
1 TCGGCATTAAGTTATA
22492335 TCGGCATTAAGTTAT
1 TCGGCATTAAGTTAT
22492350 CTTAATAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (16 bp):
TCGGCATTAAGTTATA
Found at i:22495424 original size:43 final size:43
Alignment explanation
Indices: 22495275--22495439 Score: 133
Period size: 43 Copynumber: 3.9 Consensus size: 43
22495265 AACTTGTACA
* * * * * * *
22495275 ATGCCAACGTCCTAGACGTGTTCTTACATGTAATCATATATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACAAATCG
* *
22495318 ATGCC-ACTGTCTCAGACAG-GGTCTTACACG--AA-TCAAATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAACACAAAT-CG
* * ** *
22495359 ATGCCGATGTCCTTGACATGGTCTTACACGTAAACACAAATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACAAATCG
*
22495402 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACA
22495440 TATCAAAAAT
Statistics
Matches: 93, Mismatches: 21, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
40 3 0.03
41 24 0.26
42 3 0.03
43 57 0.61
44 6 0.06
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACAAATCG
Found at i:22508981 original size:3 final size:3
Alignment explanation
Indices: 22508973--22509018 Score: 60
Period size: 3 Copynumber: 15.7 Consensus size: 3
22508963 GATTGTATCC
*
22508973 TTA TTA TTA -TA TTA TTTA TTA TT- TTA TCA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
22509017 TT
1 TT
22509019 TTTTTTATAC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 4 0.11
3 31 0.82
4 3 0.08
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:22509079 original size:25 final size:23
Alignment explanation
Indices: 22509039--22509107 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
22509029 ATATACACAC
22509039 GCAT-TTTTTTAT-AATATATAT
1 GCATATTTTTTATAAATATATAT
* *
22509060 GCATACATTTTTTATAAATACATGT
1 GCAT--ATTTTTTATAAATATATAT
* *
22509085 GCATATTTTATATATATATATAT
1 GCATATTTTTTATAAATATATAT
22509108 TATTATTATT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
21 4 0.11
23 15 0.39
24 8 0.21
25 11 0.29
ACGTcount: A:0.36, C:0.07, G:0.06, T:0.51
Consensus pattern (23 bp):
GCATATTTTTTATAAATATATAT
Found at i:22509631 original size:35 final size:35
Alignment explanation
Indices: 22509590--22509659 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
22509580 AATAATCGAG
22509590 AATATTTTTTTTAAAACACATAAATAAAAAATCAT
1 AATATTTTTTTTAAAACACATAAATAAAAAATCAT
*
22509625 AATATTTTTTTTAAAACGCATAAATAAAAAATCAT
1 AATATTTTTTTTAAAACACATAAATAAAAAATCAT
22509660 TTTCGAGAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.53, C:0.09, G:0.01, T:0.37
Consensus pattern (35 bp):
AATATTTTTTTTAAAACACATAAATAAAAAATCAT
Found at i:22516627 original size:27 final size:26
Alignment explanation
Indices: 22516591--22516654 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 26
22516581 ACACTTTTCG
* *
22516591 TATTCATTTTTGAGCCAGTAGTCTTT
1 TATTCTTTTTTGAGCAAGTAGTCTTT
* * * *
22516617 TCATTCTTTTTCGAGTAATTATTCTTT
1 T-ATTCTTTTTTGAGCAAGTAGTCTTT
22516644 TATTCTTTTTT
1 TATTCTTTTTT
22516655 CCACATCATT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
26 10 0.33
27 20 0.67
ACGTcount: A:0.17, C:0.14, G:0.09, T:0.59
Consensus pattern (26 bp):
TATTCTTTTTTGAGCAAGTAGTCTTT
Found at i:22521584 original size:50 final size:50
Alignment explanation
Indices: 22521516--22521633 Score: 112
Period size: 50 Copynumber: 2.4 Consensus size: 50
22521506 AAGACACCAG
* * * * * * *
22521516 TCTTATCGCCTTGACGTTGTAATGGAATAGATTGAAGCTACAACGGCGAA
1 TCTTATCTCCCTGGCGTTGCAACGGAACAGATTGAAGCCACAACGGCGAA
* * ** *
22521566 TCTTA-CTTCCCTGGCGTTGCAGCGGAGCAGATTGAAGCCACAATTGTGAA
1 TCTTATC-TCCCTGGCGTTGCAACGGAACAGATTGAAGCCACAACGGCGAA
22521616 TCTTATCTCCCTGGCGTT
1 TCTTATCTCCCTGGCGTT
22521634 AAGGCTTGGA
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
49 1 0.02
50 52 0.96
51 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.30
Consensus pattern (50 bp):
TCTTATCTCCCTGGCGTTGCAACGGAACAGATTGAAGCCACAACGGCGAA
Found at i:22521759 original size:50 final size:50
Alignment explanation
Indices: 22521702--22521986 Score: 219
Period size: 50 Copynumber: 5.7 Consensus size: 50
22521692 TTTGGCATTA
* *
22521702 TAGTGGAATAGATTGAAGCCACAACGGCGAATTTTACCTCCCTGGCGGTG
1 TAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTG
* * * * * *** * ****
22521752 TAGTGGAACAGATTAAAGTCACGACGGTGAATTTTGTTTCCCCGATATTG
1 TAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTG
* ** * *
22521802 CAGTTAAATAGATTGAAGCCACAACGGCGAATCTTACCTCCCTAGCGGTG
1 TAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTG
* * * *** * * **
22521852 TAGTGGAACAGATTGAAGTCACGACGGTGAATCTTGTTTCCCCGACATTG
1 TAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTG
* ** * * *
22521902 CAGTTAAATAGATTGAAGCCACAACGGCGAATCTTACCTTCCTGGAGGTG
1 TAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTG
* * *
22521952 TAGTGGAACAGATTGAAGTCACGACGACGAATCTT
1 TAGTGGAACAGATTGAAGCCACAACGGCGAATCTT
22521987 GTTTCCCTAA
Statistics
Matches: 166, Mismatches: 69, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
50 166 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.26
Consensus pattern (50 bp):
TAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTG
Found at i:22521881 original size:100 final size:100
Alignment explanation
Indices: 22521708--22522019 Score: 507
Period size: 100 Copynumber: 3.1 Consensus size: 100
22521698 ATTATAGTGG
* *
22521708 AATAGATTGAAGCCACAACGGCGAATTTTACCTCCCTGGCGGTGTAGTGGAACAGATTAAAGTCA
1 AATAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTGTAGTGGAACAGATTGAAGTCA
* *
22521773 CGACGGTGAATTTTGTTTCCCCGATATTGCAGTTA
66 CGACGGTGAATCTTGTTTCCCCGACATTGCAGTTA
*
22521808 AATAGATTGAAGCCACAACGGCGAATCTTACCTCCCTAGCGGTGTAGTGGAACAGATTGAAGTCA
1 AATAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTGTAGTGGAACAGATTGAAGTCA
22521873 CGACGGTGAATCTTGTTTCCCCGACATTGCAGTTA
66 CGACGGTGAATCTTGTTTCCCCGACATTGCAGTTA
* *
22521908 AATAGATTGAAGCCACAACGGCGAATCTTACCTTCCTGGAGGTGTAGTGGAACAGATTGAAGTCA
1 AATAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTGTAGTGGAACAGATTGAAGTCA
** **
22521973 CGACGACGAATCTTGTTTCCCTAACATTGCAGTTA
66 CGACGGTGAATCTTGTTTCCCCGACATTGCAGTTA
* *
22522008 AACAAATTGAAG
1 AATAGATTGAAG
22522020 AAAATAATCT
Statistics
Matches: 198, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 198 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (100 bp):
AATAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTGTAGTGGAACAGATTGAAGTCA
CGACGGTGAATCTTGTTTCCCCGACATTGCAGTTA
Found at i:22522017 original size:50 final size:50
Alignment explanation
Indices: 22521758--22522019 Score: 197
Period size: 50 Copynumber: 5.2 Consensus size: 50
22521748 GGTGTAGTGG
* * * * *
22521758 AACAGATTAAAGTCACGACGGTGAATTTTGTTTCCCCGATATTGCAGTTA
1 AACAGATTGAAGTCACGACGGCGAATCTTGTTTCCCTGACATTGCAGTTA
* * * *** ** * **
22521808 AATAGATTGAAGCCACAACGGCGAATCTTACCTCCCT-AGCGGTGTAGTGG
1 AACAGATTGAAGTCACGACGGCGAATCTTGTTTCCCTGA-CATTGCAGTTA
* *
22521858 AACAGATTGAAGTCACGACGGTGAATCTTGTTTCCCCGACATTGCAGTTA
1 AACAGATTGAAGTCACGACGGCGAATCTTGTTTCCCTGACATTGCAGTTA
* * * ** ** * **
22521908 AATAGATTGAAGCCACAACGGCGAATCTTACCTT-CCTGGA-GGTGTAGTGG
1 AACAGATTGAAGTCACGACGGCGAATCTT-GTTTCCCT-GACATTGCAGTTA
* *
22521958 AACAGATTGAAGTCACGACGACGAATCTTGTTTCCCTAACATTGCAGTTA
1 AACAGATTGAAGTCACGACGGCGAATCTTGTTTCCCTGACATTGCAGTTA
*
22522008 AACAAATTGAAG
1 AACAGATTGAAG
22522020 AAAATAATCT
Statistics
Matches: 152, Mismatches: 54, Indels: 12
0.70 0.25 0.06
Matches are distributed among these distances:
49 4 0.03
50 143 0.94
51 5 0.03
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.26
Consensus pattern (50 bp):
AACAGATTGAAGTCACGACGGCGAATCTTGTTTCCCTGACATTGCAGTTA
Found at i:22522244 original size:41 final size:41
Alignment explanation
Indices: 22522144--22522250 Score: 126
Period size: 42 Copynumber: 2.6 Consensus size: 41
22522134 TAAAGAAAAT
* * ** *
22522144 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAACATC
1 AATCTTATCTCTCTGAAGTTGCAGAAGAGCAGATCAACATC
* *
22522185 AGATCTTATCTCTTTGAAGTTGCAGAAGAGCAGATCGA-ATCC
1 A-ATCTTATCTCTCTGAAGTTGCAGAAGAGCAGATCAACAT-C
22522227 AATCTTATCTCTCTGAAGTTGCAG
1 AATCTTATCTCTCTGAAGTTGCAG
22522251 TGGAGTAAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
41 25 0.45
42 31 0.55
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (41 bp):
AATCTTATCTCTCTGAAGTTGCAGAAGAGCAGATCAACATC
Found at i:22522282 original size:127 final size:121
Alignment explanation
Indices: 22522010--22522343 Score: 397
Period size: 127 Copynumber: 2.7 Consensus size: 121
22522000 TGCAGTTAAA
*
22522010 CAAATTGAAGAAAATAA-TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATCAGATCTTA
1 CAAATTGAAGAAAATAATTC-TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCAGATCTTA
* * * ** *
22522074 TTTCTCTAAAGTTGCAGATTGC--ATTCAGTCTTATCTCCCTGAAGTTGAAGTGAAG
65 TCTCTATGAAGTTGCAGAGAGCAGATTCAATCTTATCTCCCTGAAGTTGAAGTGAAG
* * * *
22522129 CAGATTAAAGAAAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAACATCAGATCTTAT
1 CAAATTGAAGAAAATAATTCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCAGATCTTAT
* * * *
22522194 CTCTTTGAAGTTGCAGAAGAGCAGATCGAATCCAATCTTATCTCTCTGAAGTTGCAGTGGAG
66 CTCTATGAAGTTGCAG-AGAGCAGAT----T-CAATCTTATCTCCCTGAAGTTGAAGTGAAG
* * * *
22522256 TAAATTGAAGAAAATAATTCTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAAACGGATCTTAT
1 CAAATTGAAGAAAATAATTCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCAGATCTTAT
22522321 CTCTATGAA-TTGCAGTAGAGCAG
66 CTCTATGAAGTTGCAG-AGAGCAG
22522344 GTCGCGTCAA
Statistics
Matches: 182, Mismatches: 24, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
119 71 0.39
120 4 0.02
122 2 0.01
126 14 0.08
127 91 0.50
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (121 bp):
CAAATTGAAGAAAATAATTCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCAGATCTTAT
CTCTATGAAGTTGCAGAGAGCAGATTCAATCTTATCTCCCTGAAGTTGAAGTGAAG
Found at i:22523652 original size:3 final size:3
Alignment explanation
Indices: 22523644--22523692 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
22523634 GATTGTATCC
* **
22523644 TTA TTA TTA -TA TTA TTTA TTA TTT TTA CCA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
22523689 TTA T
1 TTA T
22523693 ACATATATAC
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
2 2 0.05
3 33 0.87
4 3 0.08
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:22523729 original size:21 final size:21
Alignment explanation
Indices: 22523705--22523769 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 21
22523695 ATATATACAC
22523705 GCATTTTTTTATAATATATAT
1 GCATTTTTTTATAATATATAT
* *
22523726 GCATACATTTTTTATAAATACATGT
1 GCAT---TTTTTTAT-AATATATAT
*
22523751 GCA-TATTTTAT-ATATATAT
1 GCATTTTTTTATAATATATAT
22523770 TTTATTATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 10
0.70 0.10 0.20
Matches are distributed among these distances:
19 6 0.17
21 11 0.31
24 8 0.23
25 10 0.29
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (21 bp):
GCATTTTTTTATAATATATAT
Found at i:22523745 original size:25 final size:24
Alignment explanation
Indices: 22523709--22523755 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
22523699 ATACACGCAT
*
22523709 TTTTTTATAATATATATGCATACA
1 TTTTTTATAATACATATGCATACA
*
22523733 TTTTTTATAAATACATGTGCATA
1 TTTTTTAT-AATACATATGCATA
22523756 TTTTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.49
Consensus pattern (24 bp):
TTTTTTATAATACATATGCATACA
Found at i:22523781 original size:11 final size:12
Alignment explanation
Indices: 22523753--22523786 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
22523743 ATACATGTGC
22523753 ATATTTTATATAT
1 ATATTTTAT-TAT
22523766 ATATTTTATTAT
1 ATATTTTATTAT
22523778 -TATTTTATT
1 ATATTTTATT
22523787 TTCATAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 3 0.14
13 9 0.43
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTTTATTAT
Found at i:22524100 original size:21 final size:21
Alignment explanation
Indices: 22524076--22524115 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
22524066 CTGTTTTGTT
* *
22524076 CTGTTTTTTCTTTTCTTTTTA
1 CTGTTTTTTATTTTATTTTTA
22524097 CTGTTTTTTATTTTATTTT
1 CTGTTTTTTATTTTATTTT
22524116 CTTCCTTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.07, C:0.10, G:0.05, T:0.78
Consensus pattern (21 bp):
CTGTTTTTTATTTTATTTTTA
Found at i:22524682 original size:20 final size:20
Alignment explanation
Indices: 22524654--22524693 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
22524644 ATTTAAACTC
* *
22524654 CATTTATTTTTCAATTTAAT
1 CATTAATTTGTCAATTTAAT
*
22524674 CATTAATTTGTCATTTTAAT
1 CATTAATTTGTCAATTTAAT
22524694 TTTATAGTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.30, C:0.10, G:0.03, T:0.57
Consensus pattern (20 bp):
CATTAATTTGTCAATTTAAT
Found at i:22524747 original size:3 final size:3
Alignment explanation
Indices: 22524739--22524835 Score: 160
Period size: 3 Copynumber: 32.3 Consensus size: 3
22524729 GATTGTATCC
* *
22524739 TTA TTA TTA -TA TTA TTTA TTA TTT TTA TCA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
22524784 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
22524832 TTA T
1 TTA T
22524836 ACATATACAC
Statistics
Matches: 88, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
2 2 0.02
3 83 0.94
4 3 0.03
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:22528196 original size:24 final size:25
Alignment explanation
Indices: 22528139--22528197 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
22528129 ATGCATGCAT
* *
22528139 ATATATAAAAACAATGACAATAATA
1 ATATAGAAAAACAATGACAAAAATA
* *
22528164 ATA-AGAAAAATAATGATAAAAATA
1 ATATAGAAAAACAATGACAAAAATA
22528188 ATATA-AAAAA
1 ATATAGAAAAA
22528198 GACTAAATTG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 25 0.86
25 4 0.14
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.22
Consensus pattern (25 bp):
ATATAGAAAAACAATGACAAAAATA
Found at i:22536380 original size:3 final size:3
Alignment explanation
Indices: 22536374--22536468 Score: 77
Period size: 3 Copynumber: 30.7 Consensus size: 3
22536364 GTTAATTACT
* **
22536374 TTA TTA TTA TTT TCTA TTA TTA TTA TTA TTA TTA CCA TTA TTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
22536420 TTA TTAA TCA TTA TTA GTT- TTA TTT TTC TT- TTA TTTA TTCA TTA TTA
1 TTA TT-A TTA TTA TTA -TTA TTA TTA TTA TTA TTA -TTA TT-A TTA TTA
22536467 TT
1 TT
22536469 GTGATAATAT
Statistics
Matches: 75, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
2 4 0.05
3 59 0.79
4 12 0.16
ACGTcount: A:0.27, C:0.06, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:22536496 original size:15 final size:16
Alignment explanation
Indices: 22536476--22536509 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
22536466 ATTGTGATAA
22536476 TATATTA-ATTAGTTT
1 TATATTATATTAGTTT
*
22536491 TATATTATTTTAGTTT
1 TATATTATATTAGTTT
22536507 TAT
1 TAT
22536510 TTTTATTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (16 bp):
TATATTATATTAGTTT
Found at i:22539181 original size:20 final size:20
Alignment explanation
Indices: 22539152--22539195 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
22539142 GCCTAGGTCG
*
22539152 TGTGGAGGTCGACATGCCCA
1 TGTGGAGGTCGACACGCCCA
* *
22539172 TGTGGTGGTCTACACGCCCA
1 TGTGGAGGTCGACACGCCCA
22539192 TGTG
1 TGTG
22539196 CAAGCTGCAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.16, C:0.25, G:0.34, T:0.25
Consensus pattern (20 bp):
TGTGGAGGTCGACACGCCCA
Found at i:22552427 original size:27 final size:27
Alignment explanation
Indices: 22552397--22552465 Score: 95
Period size: 26 Copynumber: 2.6 Consensus size: 27
22552387 TTATTTTTTA
22552397 TTTTTTATTTTTTAATTTTAAAATACT
1 TTTTTTATTTTTTAATTTTAAAATACT
* *
22552424 TTTTTTA-TTTTTATTTTTAAAATATT
1 TTTTTTATTTTTTAATTTTAAAATACT
*
22552450 TTTTTGTATTTATTAA
1 TTTTT-TATTTTTTAA
22552466 AAAATAGGCC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 22 0.61
27 9 0.25
28 5 0.14
ACGTcount: A:0.28, C:0.01, G:0.01, T:0.70
Consensus pattern (27 bp):
TTTTTTATTTTTTAATTTTAAAATACT
Found at i:22552434 original size:7 final size:7
Alignment explanation
Indices: 22552383--22552415 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
22552373 TAATAAATAT
22552383 TTTTTTA
1 TTTTTTA
22552390 TTTTTTA
1 TTTTTTA
22552397 TTTTTTA
1 TTTTTTA
22552404 TTTTTTA
1 TTTTTTA
*
22552411 ATTTT
1 TTTTT
22552416 AAAATACTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTTA
Found at i:22553980 original size:19 final size:19
Alignment explanation
Indices: 22553952--22553998 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
22553942 CTTTTTTGAA
22553952 ATTTTAGAATTTTTATAAAT
1 ATTTT-GAATTTTTATAAAT
* *
22553972 ATTTTGAATTTTTTTAATT
1 ATTTTGAATTTTTATAAAT
*
22553991 TTTTTGAA
1 ATTTTGAA
22553999 GAGATTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (19 bp):
ATTTTGAATTTTTATAAAT
Found at i:22553985 original size:9 final size:9
Alignment explanation
Indices: 22553943--22553994 Score: 50
Period size: 9 Copynumber: 5.7 Consensus size: 9
22553933 TTTATAATTC
22553943 TTTTTTGAA
1 TTTTTTGAA
* *
22553952 ATTTTAGAA
1 TTTTTTGAA
*
22553961 TTTTTATAAA
1 TTTTT-TGAA
*
22553971 TATTTTGAA
1 TTTTTTGAA
*
22553980 TTTTTTTAA
1 TTTTTTGAA
22553989 TTTTTT
1 TTTTTT
22553995 TGAAGAGATT
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
9 27 0.82
10 6 0.18
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (9 bp):
TTTTTTGAA
Found at i:22557463 original size:4 final size:4
Alignment explanation
Indices: 22557454--22557508 Score: 110
Period size: 4 Copynumber: 13.8 Consensus size: 4
22557444 GAAGAGATAG
22557454 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
22557502 AGAT AGA
1 AGAT AGA
22557509 GAGAGAGAGA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.25, T:0.24
Consensus pattern (4 bp):
AGAT
Found at i:22557513 original size:2 final size:2
Alignment explanation
Indices: 22557506--22557558 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
22557496 ATAGATAGAT
22557506 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
22557548 AG AG AG A- AG AG
1 AG AG AG AG AG AG
22557559 TTTTATATTT
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 49 0.98
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:22560631 original size:21 final size:21
Alignment explanation
Indices: 22560607--22560670 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
22560597 TTTTAGTAGC
22560607 TGAATTATGAATAGTTAGATT
1 TGAATTATGAATAGTTAGATT
* **
22560628 TGAA-AAT-TTTAG-TAG--T
1 TGAATTATGAATAGTTAGATT
22560644 TGAATTATGAATAGTTAGATT
1 TGAATTATGAATAGTTAGATT
22560665 TGAATT
1 TGAATT
22560671 CCAGTTTAGT
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
16 5 0.16
17 2 0.06
18 6 0.19
19 6 0.19
20 2 0.06
21 11 0.34
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.44
Consensus pattern (21 bp):
TGAATTATGAATAGTTAGATT
Found at i:22560666 original size:37 final size:37
Alignment explanation
Indices: 22560586--22560668 Score: 148
Period size: 37 Copynumber: 2.2 Consensus size: 37
22560576 CTTCGATGGG
*
22560586 AGATTTAAAAATTTTAGTAGCTGAATTATGAATAGTT
1 AGATTTGAAAATTTTAGTAGCTGAATTATGAATAGTT
*
22560623 AGATTTGAAAATTTTAGTAGTTGAATTATGAATAGTT
1 AGATTTGAAAATTTTAGTAGCTGAATTATGAATAGTT
22560660 AGATTTGAA
1 AGATTTGAA
22560669 TTCCAGTTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.40, C:0.01, G:0.18, T:0.41
Consensus pattern (37 bp):
AGATTTGAAAATTTTAGTAGCTGAATTATGAATAGTT
Found at i:22563172 original size:24 final size:24
Alignment explanation
Indices: 22563145--22563192 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
22563135 TTATACTACA
22563145 CTTAATAACTTA-TGTAATAATTCT
1 CTTAATAACTTACT-TAATAATTCT
*
22563169 CTTAATAATTTACTTAATAATTCT
1 CTTAATAACTTACTTAATAATTCT
22563193 TTCTTCAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 21 0.95
25 1 0.05
ACGTcount: A:0.38, C:0.12, G:0.02, T:0.48
Consensus pattern (24 bp):
CTTAATAACTTACTTAATAATTCT
Found at i:22563174 original size:12 final size:13
Alignment explanation
Indices: 22563159--22563192 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
22563149 ATAACTTATG
22563159 TAATAATTCT-CT
1 TAATAATTCTACT
22563171 TAATAATT-TACT
1 TAATAATTCTACT
22563183 TAATAATTCT
1 TAATAATTCT
22563193 TTCTTCAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 1 0.05
12 18 0.90
13 1 0.05
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (13 bp):
TAATAATTCTACT
Found at i:22564702 original size:108 final size:108
Alignment explanation
Indices: 22564513--22564721 Score: 400
Period size: 108 Copynumber: 1.9 Consensus size: 108
22564503 ACTGATTGAC
*
22564513 ATATCTAAATCAAGGTTACTAAGGTCTTTTAAATAGGCTTAGATTAGAGTTCTAATCATACTAAA
1 ATATCTAAATCAAGGTTACTAAGGCCTTTTAAATAGGCTTAGATTAGAGTTCTAATCATACTAAA
22564578 ATATCCATGAAATAATTAGAGTCCAACTGGGAGAATATCTAAA
66 ATATCCATGAAATAATTAGAGTCCAACTGGGAGAATATCTAAA
22564621 ATATCTAAATCAAGGTTACTAAGGCCTTTTAAATAGGCTTAGATTAGAGTTCTAATCATACTAAA
1 ATATCTAAATCAAGGTTACTAAGGCCTTTTAAATAGGCTTAGATTAGAGTTCTAATCATACTAAA
*
22564686 ATATCCATGAAATAATTAGAGTCCAATTGGGAGAAT
66 ATATCCATGAAATAATTAGAGTCCAACTGGGAGAAT
22564722 CAGTCTTGCT
Statistics
Matches: 99, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
108 99 1.00
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (108 bp):
ATATCTAAATCAAGGTTACTAAGGCCTTTTAAATAGGCTTAGATTAGAGTTCTAATCATACTAAA
ATATCCATGAAATAATTAGAGTCCAACTGGGAGAATATCTAAA
Found at i:22569557 original size:3 final size:3
Alignment explanation
Indices: 22569549--22569580 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
22569539 TTTATCTTTT
22569549 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
22569581 GTGCTCGTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:22571151 original size:12 final size:13
Alignment explanation
Indices: 22571126--22571154 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
22571116 ACGACAATTG
22571126 TAAATAAGATAAA
1 TAAATAAGATAAA
22571139 TAAATAA-ATAAA
1 TAAATAAGATAAA
22571151 TAAA
1 TAAA
22571155 AATTAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.24
Consensus pattern (13 bp):
TAAATAAGATAAA
Found at i:22571241 original size:16 final size:16
Alignment explanation
Indices: 22571215--22571266 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
22571205 AAAAAATACG
* *
22571215 AAAACATAAATCAACA
1 AAAAAATAAATAAACA
*
22571231 AACAAATAAATAAACA
1 AAAAAATAAATAAACA
*
22571247 AAAAAAT--ATAAAGA
1 AAAAAATAAATAAACA
22571261 AAAAAA
1 AAAAAA
22571267 AGTGCATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 12 0.39
16 19 0.61
ACGTcount: A:0.77, C:0.10, G:0.02, T:0.12
Consensus pattern (16 bp):
AAAAAATAAATAAACA
Found at i:22571495 original size:20 final size:20
Alignment explanation
Indices: 22571467--22571513 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
22571457 GATTGCATAT
*
22571467 ATATATATAGAAATTATAAA
1 ATATATATAGAAAGTATAAA
* *
22571487 ATATGTATAGAAAGTATAAT
1 ATATATATAGAAAGTATAAA
22571507 ATATATA
1 ATATATA
22571514 CGTACATATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (20 bp):
ATATATATAGAAAGTATAAA
Found at i:22571497 original size:102 final size:106
Alignment explanation
Indices: 22571362--22571575 Score: 319
Period size: 102 Copynumber: 2.0 Consensus size: 106
22571352 ATAAAGAAAA
*
22571362 ATATACATATAGAAATTATAAAAATATGGATAGAAAGTATAATATATATACGTACATATATATGT
1 ATATACATATAGAAATTATAAAAATATGGATAGAAAGTATAATATATATACGTACATATATATAT
* * * *
22571427 AA-GT-T-AATATATATAGACCATAAAGATAATGATTGCAT
66 AAGGTATAAATATATATAAACCATAAAAATAATAATTACAT
* *
22571465 ATATATATATAGAAATTAT-AAAATATGTATAGAAAGTATAATATATATACGTACATATATATAT
1 ATATACATATAGAAATTATAAAAATATGGATAGAAAGTATAATATATATACGTACATATATATAT
*
22571529 AAGGTAATAAATATATATAAATCATAAAAATAATAATTACAT
66 AAGGT-ATAAATATATATAAACCATAAAAATAATAATTACAT
22571571 ATATA
1 ATATA
22571576 AACTTAAAAA
Statistics
Matches: 99, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
102 45 0.45
103 20 0.20
105 1 0.01
106 33 0.33
ACGTcount: A:0.52, C:0.05, G:0.09, T:0.34
Consensus pattern (106 bp):
ATATACATATAGAAATTATAAAAATATGGATAGAAAGTATAATATATATACGTACATATATATAT
AAGGTATAAATATATATAAACCATAAAAATAATAATTACAT
Found at i:22571542 original size:16 final size:18
Alignment explanation
Indices: 22571504--22571547 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 18
22571494 TAGAAAGTAT
22571504 AATATATATACGTACATA
1 AATATATATACGTACATA
* *
22571522 TATATATA-AGGTA-ATA
1 AATATATATACGTACATA
22571538 AATATATATA
1 AATATATATA
22571548 AATCATAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 10 0.45
17 5 0.23
18 7 0.32
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.36
Consensus pattern (18 bp):
AATATATATACGTACATA
Found at i:22573164 original size:44 final size:45
Alignment explanation
Indices: 22573047--22573168 Score: 137
Period size: 45 Copynumber: 2.7 Consensus size: 45
22573037 GGTGCTTTAA
*
22573047 TCCACTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAG
1 TCCACTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAG
* *
22573092 TCTGC-CT-CACTGCAACTTCA-GGAGGATAATACTTG-CTTACTT-AG
1 TC--CACTCCACTGCAACTTCAGGGA-GATAAGACTTGCCAT-CTTCAG
*
22573136 TCCACTCCACCGCAACTTCAGGGAGATAAGACT
1 TCCACTCCACTGCAACTTCAGGGAGATAAGACT
22573169 AGATGCGAAC
Statistics
Matches: 65, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
42 1 0.02
43 2 0.03
44 29 0.45
45 30 0.46
46 2 0.03
47 1 0.02
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (45 bp):
TCCACTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAG
Found at i:22573279 original size:44 final size:43
Alignment explanation
Indices: 22573040--22573727 Score: 237
Period size: 44 Copynumber: 15.9 Consensus size: 43
22573030 GGAATTTGGT
**
22573040 GCTTTAATCCACTCCACTGCAACTTCAGGGAGATAAGATT-TG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATG
* * * *
22573082 CCATCTTCAGTCTGC-CTCACTGCAACTTCA-GGAGGATAATACT-T-
1 GC-T-TT-AATCTGCTC-CACTGCAACTTCAGGGA-GATAAGATTATG
* ** * *
22573126 GCTTACTTAGTCCACTCCACCGCAACTTCAGGGAGATAAGACTA-G
1 GC-T--TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATG
* * * * * *
22573171 ATGC--GAA-CTGCT-CTCTGTAACTTTAGAGAGATAAGATCTAAG
1 --GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATG
* * * * * *
22573213 GTTTTAGTCCG-TCCACTACAACTTCAGCGAGATAGGATTATCG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAT-G
22573256 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-TG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATG
* * * * *
22573298 CCATCTTCAGTCTGC-CTCACTACAACTTCA-GGAGGATAGGACT-T-
1 GC-T-TT-AATCTGCTC-CACTGCAACTTCAGGGA-GATAAGATTATG
* * * *
22573342 GCTTACTTAGTCCGCTCCACCGCAACTTCAGGGAGATAAGACTA--
1 GC-T--TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATG
* *** * * * *
22573386 GATGCGATCTGCT-CTCTACAACTTCAGAGAGATAAGATCTAAG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATG
* * * *
22573429 GTTTTAATCCGCT-CACTGCAACTTCAGTGAGATAAGATTACCG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA-TG
**
22573472 GCTTTAATCTGCTCCACTGCAACTTCATAGAGATAAGATT-TG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATG
* * *
22573514 CCATCTTCAGTCTGC-CTCACTGCAACTTCA-GGAGGATAAGACT-T-
1 GC-T-TT-AATCTGCTC-CACTGCAACTTCAGGGA-GATAAGATTATG
* * * * * * * *
22573558 GCTTACTTAGTCCGCTCTACCGTAACTCCAAGGAGATAAGACTA--
1 GC-T--TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATG
* *** ** * *
22573602 GATGCGATCTGCT-CTTTGCAACTTCAGAGAGATAAGATCTAAG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATG
* * * * *
22573645 GTTTTAATCCGC-CCACTGCAACTTCAGCGAGATAGGATTACCG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA-TG
* *
22573688 ACTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
22573728 TGCCATCTTC
Statistics
Matches: 480, Mismatches: 117, Indels: 96
0.69 0.17 0.14
Matches are distributed among these distances:
40 56 0.12
41 19 0.04
42 15 0.03
43 116 0.24
44 172 0.36
45 100 0.21
47 2 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (43 bp):
GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATG
Found at i:22573336 original size:89 final size:87
Alignment explanation
Indices: 22573226--22573770 Score: 254
Period size: 89 Copynumber: 6.3 Consensus size: 87
22573216 TTAGTCCGTC
* *
22573226 CACTACAACTTCAGCGA-GATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGAT
1 CACTGCAACTTCAG-GAGGATAAGATTAT-GGCTTTAATCTGCTCCACTGCAACTTCAGGGAGAT
22573290 AAGATTTGCCATCTTCAGTCTGCCT
64 AAGATTTGCCATCTTCAGTCTG-CT
* * * * * *
22573315 CACTACAACTTCAGGAGGATAGGACT-T-GCTTACTTAGTCCGCTCCACCGCAACTTCAGGGAGA
1 CACTGCAACTTCAGGAGGATAAGATTATGGC-T--TTAATCTGCTCCACTGCAACTTCAGGGAGA
* * *
22573378 TAAGACTAG--A--TGC-GATCTGCT
63 TAAGATTTGCCATCTTCAG-TCTGCT
* * * * * *
22573399 CTCTACAACTTCA-GAGAGATAAGATCTAAGGTTTTAATCCGCT-CACTGCAACTTCAGTGAGAT
1 CACTGCAACTTCAGGAG-GATAAGAT-TATGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGAT
* ** * *
22573462 AAGA-TTACCGGCTTTAATCTGCT
64 AAGATTTGCCATCTTCAGTCTGCT
* * *
22573485 CCACTGCAACTTCA-TAGAGATAAGATT-TGCCATCTTCAGTCTGC-CTCACTGCAACTTCA-GG
1 -CACTGCAACTTCAGGAG-GATAAGATTATGGC-T-TT-AATCTGCTC-CACTGCAACTTCAGGG
* * *
22573546 AGGATAAGACTTG-CTTACTT-AGTCCGCT
60 A-GATAAGATTTGCCAT-CTTCAGTCTGCT
* * * * * *** ** *
22573574 CTACCGTAACTCCAAGGA-GATAAGACTA--GATGCGATCTGCT-CTTTGCAACTTCAGAGAGAT
1 C-ACTGCAACTTC-AGGAGGATAAGATTATGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGAT
* **** * * * *
22573635 AAGATCTAAGGT-TTTAATCCGCC
64 AAGATTTGCCATCTTCAGTCTGCT
* * * *
22573658 CACTGCAACTTCAGCGA-GATAGGATTACCGACTTTAATCTGCTCCACTACAACTTCAGGGAGAT
1 CACTGCAACTTCAG-GAGGATAAGATTA-TGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGAT
22573722 AAGATTTGCCATCTTCAGTCTGCCT
64 AAGATTTGCCATCTTCAGTCTG-CT
*
22573747 CACTGCAACTTTAGGAGGATAAGA
1 CACTGCAACTTCAGGAGGATAAGA
22573771 CTTGTCTGTT
Statistics
Matches: 336, Mismatches: 81, Indels: 78
0.68 0.16 0.16
Matches are distributed among these distances:
82 3 0.01
83 45 0.13
84 56 0.17
85 16 0.05
86 20 0.06
87 51 0.15
88 19 0.06
89 119 0.35
90 6 0.02
91 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (87 bp):
CACTGCAACTTCAGGAGGATAAGATTATGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
GATTTGCCATCTTCAGTCTGCT
Found at i:22573417 original size:216 final size:215
Alignment explanation
Indices: 22573040--22573774 Score: 1218
Period size: 216 Copynumber: 3.4 Consensus size: 215
22573030 GGAATTTGGT
**
22573040 GCTTTAATCCACTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGC
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGC
* *
22573105 AACTTCAGGAGGATAATACTTGCTTACTTAGTCCACTCCACCGCAACTTCAGGGAGATAAGACTA
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCCGCTCCACCGCAACTTCAGGGAGATAAGACTA
* * * * *
22573170 GATGCGAACTGCTCTCTGTAACTTTAGAGAGATAAGATCTAAGGTTTTAGTCCGTCCACTACAAC
131 GATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCG-CCACTGCAAC
*
22573235 TTCAGCGAGATAGGATTATCG
195 TTCAGCGAGATAGGATTACCG
*
22573256 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTAC
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGC
*
22573321 AACTTCAGGAGGATAGGACTTGCTTACTTAGTCCGCTCCACCGCAACTTCAGGGAGATAAGACTA
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCCGCTCCACCGCAACTTCAGGGAGATAAGACTA
*
22573386 GATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCACTGCAAC
131 GATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGC-CACTGCAAC
* *
22573451 TTCAGTGAGATAAGATTACCG
195 TTCAGCGAGATAGGATTACCG
**
22573472 GCTTTAATCTGCTCCACTGCAACTTCATAGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGC
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGC
* * * *
22573537 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCCGCTCTACCGTAACTCCAAGGAGATAAGACTA
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCCGCTCCACCGCAACTTCAGGGAGATAAGACTA
*
22573602 GATGCGATCTGCTCTTTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCCCACTGCAAC
131 GATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCG-CCACTGCAAC
22573667 TTCAGCGAGATAGGATTACCG
195 TTCAGCGAGATAGGATTACCG
* *
22573688 ACTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGC
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGC
*
22573753 AACTTTAGGAGGATAAGACTTG
66 AACTTCAGGAGGATAAGACTTG
22573775 TCTGTTATCT
Statistics
Matches: 485, Mismatches: 32, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
215 1 0.00
216 483 1.00
217 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (215 bp):
GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGC
AACTTCAGGAGGATAAGACTTGCTTACTTAGTCCGCTCCACCGCAACTTCAGGGAGATAAGACTA
GATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCCACTGCAACT
TCAGCGAGATAGGATTACCG
Found at i:22573669 original size:43 final size:44
Alignment explanation
Indices: 22573618--22573727 Score: 125
Period size: 43 Copynumber: 2.5 Consensus size: 44
22573608 ATCTGCTCTT
**
22573618 TGCAACTTCAGAGAGATAAGATCTA-AGGTTTTAATCCGC-CCAC
1 TGCAACTTCAGAGAGATAAGAT-TACAGACTTTAATCCGCTCCAC
* * * *
22573661 TGCAACTTCAGCGAGATAGGATTACCGACTTTAATCTGCTCCAC
1 TGCAACTTCAGAGAGATAAGATTACAGACTTTAATCCGCTCCAC
* *
22573705 TACAACTTCAGGGAGATAAGATT
1 TGCAACTTCAGAGAGATAAGATT
22573728 TGCCATCTTC
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
42 2 0.04
43 30 0.54
44 24 0.43
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (44 bp):
TGCAACTTCAGAGAGATAAGATTACAGACTTTAATCCGCTCCAC
Found at i:22579481 original size:485 final size:485
Alignment explanation
Indices: 22578572--22579542 Score: 1942
Period size: 485 Copynumber: 2.0 Consensus size: 485
22578562 GACTTTAGGT
22578572 ACTTCTTCCATAGTCCAATTATCTGGAACATTCCCGGGCTCATAAGGACGAATGTCCAGCCAGCT
1 ACTTCTTCCATAGTCCAATTATCTGGAACATTCCCGGGCTCATAAGGACGAATGTCCAGCCAGCT
22578637 CCTCTCTTCATTCACATGCTCATGAATGGCGTTGATGTGCATATTTCCCAACGTCTCATCGATGC
66 CCTCTCTTCATTCACATGCTCATGAATGGCGTTGATGTGCATATTTCCCAACGTCTCATCGATGC
22578702 TTTTCTCAACCGATTTCTTTCCCTCATGATGAATAACTCCTCCAGATACGAAAGTTTTGGATATG
131 TTTTCTCAACCGATTTCTTTCCCTCATGATGAATAACTCCTCCAGATACGAAAGTTTTGGATATG
22578767 TGGGGGATTATCATTGGCTCCCACTTAGCTTCCTCCCCATTTAAACGCGCCCTTCTCCTTTCCTG
196 TGGGGGATTATCATTGGCTCCCACTTAGCTTCCTCCCCATTTAAACGCGCCCTTCTCCTTTCCTG
22578832 CCTTTTTTCTACCTTCTTCCTTCTCTGTCCTCTATTTGGCTTGTATCCTAAGCCAAAGTGATCCT
261 CCTTTTTTCTACCTTCTTCCTTCTCTGTCCTCTATTTGGCTTGTATCCTAAGCCAAAGTGATCCT
22578897 ACTTTTCTTTCAGCATTGGAACCTCAGTCCTCCCTTGAAGGTATCTCCCTAGCCCTCTTTTGGGT
326 ACTTTTCTTTCAGCATTGGAACCTCAGTCCTCCCTTGAAGGTATCTCCCTAGCCCTCTTTTGGGT
22578962 AAAGCTCCTTTTCCCACCAACAATTGTAAACCTATCTCTGTAGTTTTGGATAATTTTGGCACTAA
391 AAAGCTCCTTTTCCCACCAACAATTGTAAACCTATCTCTGTAGTTTTGGATAATTTTGGCACTAA
22579027 AATTTTACTCCCTTCAGGAACAAATGCCGC
456 AATTTTACTCCCTTCAGGAACAAATGCCGC
22579057 ACTTCTTCCATAGTCCAATTATCTGGAACATTCCCGGGCTCATAAGGACGAATGTCCAGCCAGCT
1 ACTTCTTCCATAGTCCAATTATCTGGAACATTCCCGGGCTCATAAGGACGAATGTCCAGCCAGCT
22579122 CCTCTCTTCATTCACATGCTCATGAATGGCGTTGATGTGCATATTTCCCAACGTCTCATCGATGC
66 CCTCTCTTCATTCACATGCTCATGAATGGCGTTGATGTGCATATTTCCCAACGTCTCATCGATGC
22579187 TTTTCTCAACCGATTTCTTTCCCTCATGATGAATAACTCCTCCAGATACGAAAGTTTTGGATATG
131 TTTTCTCAACCGATTTCTTTCCCTCATGATGAATAACTCCTCCAGATACGAAAGTTTTGGATATG
22579252 TGGGGGATTATCATTGGCTCCCACTTAGCTTCCTCCCCATTTAAACGCGCCCTTCTCCTTTCCTG
196 TGGGGGATTATCATTGGCTCCCACTTAGCTTCCTCCCCATTTAAACGCGCCCTTCTCCTTTCCTG
22579317 CCTTTTTTCTACCTTCTTCCTTCTCTGTCCTCTATTTGGCTTGTATCCTAAGCCAAAGTGATCCT
261 CCTTTTTTCTACCTTCTTCCTTCTCTGTCCTCTATTTGGCTTGTATCCTAAGCCAAAGTGATCCT
22579382 ACTTTTCTTTCAGCATTGGAACCTCAGTCCTCCCTTGAAGGTATCTCCCTAGCCCTCTTTTGGGT
326 ACTTTTCTTTCAGCATTGGAACCTCAGTCCTCCCTTGAAGGTATCTCCCTAGCCCTCTTTTGGGT
22579447 AAAGCTCCTTTTCCCACCAACAATTGTAAACCTATCTCTGTAGTTTTGGATAATTTTGGCACTAA
391 AAAGCTCCTTTTCCCACCAACAATTGTAAACCTATCTCTGTAGTTTTGGATAATTTTGGCACTAA
22579512 AATTTTACTCCCTTCAGGAACAAATGCCGC
456 AATTTTACTCCCTTCAGGAACAAATGCCGC
22579542 A
1 A
22579543 TTTACAAACT
Statistics
Matches: 486, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
485 486 1.00
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (485 bp):
ACTTCTTCCATAGTCCAATTATCTGGAACATTCCCGGGCTCATAAGGACGAATGTCCAGCCAGCT
CCTCTCTTCATTCACATGCTCATGAATGGCGTTGATGTGCATATTTCCCAACGTCTCATCGATGC
TTTTCTCAACCGATTTCTTTCCCTCATGATGAATAACTCCTCCAGATACGAAAGTTTTGGATATG
TGGGGGATTATCATTGGCTCCCACTTAGCTTCCTCCCCATTTAAACGCGCCCTTCTCCTTTCCTG
CCTTTTTTCTACCTTCTTCCTTCTCTGTCCTCTATTTGGCTTGTATCCTAAGCCAAAGTGATCCT
ACTTTTCTTTCAGCATTGGAACCTCAGTCCTCCCTTGAAGGTATCTCCCTAGCCCTCTTTTGGGT
AAAGCTCCTTTTCCCACCAACAATTGTAAACCTATCTCTGTAGTTTTGGATAATTTTGGCACTAA
AATTTTACTCCCTTCAGGAACAAATGCCGC
Found at i:22586097 original size:16 final size:16
Alignment explanation
Indices: 22586042--22586110 Score: 61
Period size: 16 Copynumber: 4.3 Consensus size: 16
22586032 GCAAAGTATC
*
22586042 AAATAAATGAACAAAA
1 AAATAAATAAACAAAA
*
22586058 TAAA-AAA-AATACGAAA
1 -AAATAAATAA-ACAAAA
* * *
22586074 ACATAAATCAACAAAC
1 AAATAAATAAACAAAA
22586090 AAATAAATAAACAAAA
1 AAATAAATAAACAAAA
22586106 AAATA
1 AAATA
22586111 TAAAGAAAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 7
0.71 0.16 0.12
Matches are distributed among these distances:
15 3 0.08
16 33 0.82
17 4 0.10
ACGTcount: A:0.74, C:0.10, G:0.03, T:0.13
Consensus pattern (16 bp):
AAATAAATAAACAAAA
Found at i:22586238 original size:21 final size:21
Alignment explanation
Indices: 22586214--22586267 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
22586204 GAATAAAGAA
* *
22586214 AAATATACATATAGAAATTAT
1 AAATATATATATAGAAAGTAT
**
22586235 AAATATATGGATAGAAAGTAT
1 AAATATATATATAGAAAGTAT
22586256 -AATATATATATA
1 AAATATATATATA
22586268 CGTACATATA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 10 0.37
21 17 0.63
ACGTcount: A:0.56, C:0.02, G:0.09, T:0.33
Consensus pattern (21 bp):
AAATATATATATAGAAAGTAT
Found at i:22586406 original size:18 final size:19
Alignment explanation
Indices: 22586360--22586406 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
22586350 TAGAAAGTAT
22586360 AATATATAT-ACGTACATA
1 AATATATATAACGTACATA
* *
22586378 TATATATATAAGGTA-ATA
1 AATATATATAACGTACATA
22586396 AATATATATAA
1 AATATATATAA
22586407 ATCATAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.53, C:0.04, G:0.06, T:0.36
Consensus pattern (19 bp):
AATATATATAACGTACATA
Found at i:22586433 original size:104 final size:104
Alignment explanation
Indices: 22586216--22586433 Score: 246
Period size: 102 Copynumber: 2.1 Consensus size: 104
22586206 ATAAAGAAAA
* *
22586216 ATATACATATAGAAATTATAAATATATGGATAGAAAGTATAATATATATATACGTACATATATAT
1 ATATATATATAGAAATTATAAATATAAGGATAGAAAGTATAATATATATATACGTACATATATAT
* * * * *
22586281 GTATGTTAATAAATATAGACCATAAAGATAATGATTGCAT
66 ATATGTTAATAAATATAAACCATAAAAATAATAATT-CAC
*
22586321 ATATATATATAGAAATTATAAA-ATAAGTATAGAAAGTAT-A-ATATATATACGTACATATATAT
1 ATATATATATAGAAATTATAAATATAAGGATAGAAAGTATAATATATATATACGTACATATATAT
* *
22586383 ATATAAGGTAATAAATATATATAAATCATAAAAATAATAATT-AC
66 ATAT---GT--T-AATAAATATAAACCATAAAAATAATAATTCAC
*
22586427 AAATATA
1 ATATATA
22586434 AACTTAAAAA
Statistics
Matches: 96, Mismatches: 11, Indels: 11
0.81 0.09 0.09
Matches are distributed among these distances:
102 25 0.26
103 1 0.01
104 15 0.16
105 23 0.24
106 7 0.07
107 1 0.01
108 24 0.25
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.34
Consensus pattern (104 bp):
ATATATATATAGAAATTATAAATATAAGGATAGAAAGTATAATATATATATACGTACATATATAT
ATATGTTAATAAATATAAACCATAAAAATAATAATTCAC
Found at i:22587719 original size:15 final size:16
Alignment explanation
Indices: 22587693--22587725 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
22587683 ATTTGGACCC
22587693 TATTTTTCTATTTATT
1 TATTTTTCTATTTATT
*
22587709 TATTTTT-TATTTGTT
1 TATTTTTCTATTTATT
22587724 TA
1 TA
22587726 CTATGAGCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (16 bp):
TATTTTTCTATTTATT
Found at i:22590939 original size:15 final size:15
Alignment explanation
Indices: 22590916--22590949 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
22590906 TTACTTTTTG
* *
22590916 TGATGTAAATATAAA
1 TGATATAAATAAAAA
22590931 TGATATAAATAAAAA
1 TGATATAAATAAAAA
22590946 TGAT
1 TGAT
22590950 CATTTTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (15 bp):
TGATATAAATAAAAA
Found at i:22592749 original size:21 final size:21
Alignment explanation
Indices: 22592710--22592749 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
22592700 TTGCCACTAA
* *
22592710 TCGTTATACAACCTGTCCAAG
1 TCGTGATACAACCTATCCAAG
*
22592731 TCGTGATACAACTTATCCA
1 TCGTGATACAACCTATCCA
22592750 TAGCCTTTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (21 bp):
TCGTGATACAACCTATCCAAG
Found at i:22596591 original size:39 final size:39
Alignment explanation
Indices: 22596519--22596594 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
22596509 AGGTTTTGTG
* *
22596519 GGGGTATAGAATAATTATCCTATTGGTAATGATAAAACA
1 GGGGTACAGAATAATTATCCTATTCGTAATGATAAAACA
* * * *
22596558 GGGGTACATAATAATTATCTTATTCTTATTGATAAAA
1 GGGGTACAGAATAATTATCCTATTCGTAATGATAAAA
22596595 TAGAACGAGC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.39, C:0.08, G:0.17, T:0.36
Consensus pattern (39 bp):
GGGGTACAGAATAATTATCCTATTCGTAATGATAAAACA
Found at i:22609138 original size:19 final size:19
Alignment explanation
Indices: 22609129--22609166 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 19
22609119 TTTATCTTTG
22609129 TCTTTAATTTTAATTTTAA
1 TCTTTAATTTTAATTTTAA
22609148 TCTTTAATTTTAATGTTTA
1 TCTTTAATTTTAAT-TTTA
22609167 TTTTATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (19 bp):
TCTTTAATTTTAATTTTAA
Found at i:22609155 original size:13 final size:12
Alignment explanation
Indices: 22609065--22609171 Score: 60
Period size: 12 Copynumber: 8.8 Consensus size: 12
22609055 AAATTTCTAA
22609065 TTAATTTTAAAATT
1 TTAATTTT--AATT
* *
22609079 TTTATTTTTATT
1 TTAATTTTAATT
*
22609091 TT--TTTTAGTT
1 TTAATTTTAATT
* *
22609101 TTAGTTTTAGTT
1 TTAATTTTAATT
* *
22609113 TTCATTTTTATCT
1 TTAATTTTAAT-T
*
22609126 TT-GTCTTTAATT
1 TTAAT-TTTAATT
22609138 TTAATTTTAATCT
1 TTAATTTTAAT-T
22609151 TTAATTTTAATGT
1 TTAATTTTAAT-T
22609164 TT-ATTTTA
1 TTAATTTTA
22609172 TTTATGTTTA
Statistics
Matches: 75, Mismatches: 12, Indels: 14
0.74 0.12 0.14
Matches are distributed among these distances:
10 8 0.11
12 36 0.48
13 24 0.32
14 7 0.09
ACGTcount: A:0.23, C:0.04, G:0.05, T:0.68
Consensus pattern (12 bp):
TTAATTTTAATT
Found at i:22609159 original size:25 final size:24
Alignment explanation
Indices: 22609079--22609171 Score: 77
Period size: 25 Copynumber: 3.9 Consensus size: 24
22609069 TTTTAAAATT
* *
22609079 TTTA-TTTTTATTTT-TTTTAGT-
1 TTTAGTTTTAATTTTATTTTAATC
* *
22609100 TTTAGTTTTAGTTTTCATTTTTATC
1 TTTAGTTTTAATTTT-ATTTTAATC
22609125 TTT-GTCTTTAATTTTAATTTTAATC
1 TTTAGT-TTTAATTTT-ATTTTAATC
*
22609150 TTTAATTTTAATGTTTATTTTA
1 TTTAGTTTTAAT-TTTATTTTA
22609172 TTTATGTTTA
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
21 4 0.07
22 8 0.14
24 7 0.12
25 34 0.60
26 4 0.07
ACGTcount: A:0.20, C:0.04, G:0.05, T:0.70
Consensus pattern (24 bp):
TTTAGTTTTAATTTTATTTTAATC
Found at i:22620911 original size:17 final size:19
Alignment explanation
Indices: 22620876--22620912 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
22620866 AAGTTAAGTC
*
22620876 TGAGATTCATTAGATCGTA
1 TGAGATTCATTAGAGCGTA
22620895 TGAGATT-A-TAGAGCGTA
1 TGAGATTCATTAGAGCGTA
22620912 T
1 T
22620913 CGGGCCGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 9 0.53
18 1 0.06
19 7 0.41
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (19 bp):
TGAGATTCATTAGAGCGTA
Found at i:22622573 original size:43 final size:43
Alignment explanation
Indices: 22622508--22622601 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 43
22622498 GTGTTTTTGG
* * * *
22622508 GTAAGACCACGTCTGGGCCGATGGCATCGACTTTTATTTTCGT
1 GTAAGACCACGTCTGGGACGATGACATCGACTTGTATTTTCGA
* * *
22622551 GTAAGACCACTTTTGGGACGATGACATTGACTTGTATTTTCGA
1 GTAAGACCACGTCTGGGACGATGACATCGACTTGTATTTTCGA
22622594 GTAAGACC
1 GTAAGACC
22622602 CTGTCTAGGA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.32
Consensus pattern (43 bp):
GTAAGACCACGTCTGGGACGATGACATCGACTTGTATTTTCGA
Found at i:22634714 original size:35 final size:35
Alignment explanation
Indices: 22634660--22634774 Score: 104
Period size: 35 Copynumber: 3.2 Consensus size: 35
22634650 TAGTCGAATA
*
22634660 AGCCCAGCTCTACTTGGATATACCAACGGTATTTG
1 AGCCCAGCTCTAGTTGGATATACCAACGGTATTTG
* * * * * **
22634695 TGCCCAGCGCTAGTCGGATAAACCTACAAATAATTAGTG
1 AGCCCAGCTCTAGTTGGATATACCAAC-GGT-ATT--TG
*
22634734 AGTCCAGCTCTAGTTGGATATACCAACGGTATTTG
1 AGCCCAGCTCTAGTTGGATATACCAACGGTATTTG
*
22634769 CGCCCA
1 AGCCCA
22634775 TTGTTAGTTG
Statistics
Matches: 58, Mismatches: 18, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
35 27 0.47
36 1 0.02
37 6 0.10
38 1 0.02
39 23 0.40
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (35 bp):
AGCCCAGCTCTAGTTGGATATACCAACGGTATTTG
Found at i:22634788 original size:74 final size:74
Alignment explanation
Indices: 22634663--22634806 Score: 207
Period size: 74 Copynumber: 1.9 Consensus size: 74
22634653 TCGAATAAGC
* *
22634663 CCAGCTCTACTTGGATATACCAACGGTATTTGTGCCCAGCGCTAGTCGGATAAACCTACAAATAA
1 CCAGCTCTACTTGGATATACCAACGGTATTTGCGCCCAGCGCTAGTCGGATAAACCGACAAATAA
*
22634728 TTAGTGAGT
66 ATAGTGAGT
* ** * * *
22634737 CCAGCTCTAGTTGGATATACCAACGGTATTTGCGCCCATTGTTAGTTGGATAAACCGACGAATAA
1 CCAGCTCTACTTGGATATACCAACGGTATTTGCGCCCAGCGCTAGTCGGATAAACCGACAAATAA
22634802 ATAGT
66 ATAGT
22634807 TATTTATTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
74 61 1.00
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (74 bp):
CCAGCTCTACTTGGATATACCAACGGTATTTGCGCCCAGCGCTAGTCGGATAAACCGACAAATAA
ATAGTGAGT
Found at i:22637313 original size:98 final size:98
Alignment explanation
Indices: 22637139--22637335 Score: 358
Period size: 98 Copynumber: 2.0 Consensus size: 98
22637129 GTACAATAAA
*
22637139 ACTTTAAAAGAACATCCACTTATCCAAAATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAAATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
22637204 CCTCTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
*
22637237 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAAATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
22637302 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
22637335 A
1 A
22637336 TTATTTTAAA
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAAATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:22638660 original size:19 final size:19
Alignment explanation
Indices: 22638636--22638767 Score: 210
Period size: 19 Copynumber: 6.8 Consensus size: 19
22638626 AATCATATAT
22638636 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
22638655 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
22638674 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
22638693 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
22638714 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
22638733 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
22638752 TCTAAGATTTCATATC
1 TCTAAGATTGCATATC
22638768 CTCAAAAATT
Statistics
Matches: 104, Mismatches: 7, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
19 85 0.82
21 19 0.18
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:22638720 original size:59 final size:59
Alignment explanation
Indices: 22638629--22638766 Score: 212
Period size: 59 Copynumber: 2.4 Consensus size: 59
22638619 ATTACAAAAT
*
22638629 CATAT-AT-TCTAAGATTGC--ATATCATATCTAAGATTATATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
* *
22638684 CATATCATATCTAAGATTGCATATATCATATCTAAGATTGCATATCATATCTAGGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
*
22638743 CATATCATATCTAAGATTTCATAT
1 CATATCATATCTAAGATTGCATAT
22638767 CCTCAAAAAT
Statistics
Matches: 75, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 11 0.15
59 57 0.76
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.39
Consensus pattern (59 bp):
CATATCATATCTAAGATTGCATATATCATATCTAAGATTACATATCATATCTAAGATTG
Found at i:22647376 original size:16 final size:17
Alignment explanation
Indices: 22647344--22647381 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
22647334 CCTAAAATAT
22647344 TATTTAATAATTAAAAA
1 TATTTAATAATTAAAAA
*
22647361 TATTTAATTA-TAAAAA
1 TATTTAATAATTAAAAA
22647377 T-TTTA
1 TATTTA
22647382 CTACTTGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 7 0.35
17 9 0.45
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TATTTAATAATTAAAAA
Found at i:22647904 original size:158 final size:154
Alignment explanation
Indices: 22647630--22647912 Score: 460
Period size: 158 Copynumber: 1.8 Consensus size: 154
22647620 ATTTCAGCCT
* * *
22647630 TTTGTTCGTATTTATTTCCCGATTTTATTACTTTTAAAAAATATATTATTTTTTAGTTTTATTAT
1 TTTGTTCGTATTTATTTCCCGATTTTATTACTTTAAAAAAATATACTATTTTCTAGTTTTATTAT
22647695 TTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTATTGAAATTTA
66 TTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTG-TTTTTATTGAAATTTA
22647760 AAAAAAAAAACCCTTATTTCGTCCC
130 AAAAAAAAAACCCTTATTTCGTCCC
*
22647785 TTTGTTCGTATTTTTTTCCTCAGATTTTATTACTTTAAAAAAAATATACTATTTTCTAGTTTTAT
1 TTTGTTCGTATTTATTTCC-C-GATTTTATTACTTT-AAAAAAATATACTATTTTCTAGTTTTAT
* *
22647850 TATTTTGCATTATTTTAGTACATTATGTTTG-AATGTATTCTTTTAGTGTGGTTTTTATTGAAA
63 TATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGT-GTTTTTATTGAAA
22647913 GTAATAAAAT
Statistics
Matches: 118, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
155 18 0.15
156 1 0.01
157 43 0.36
158 56 0.47
ACGTcount: A:0.28, C:0.09, G:0.10, T:0.54
Consensus pattern (154 bp):
TTTGTTCGTATTTATTTCCCGATTTTATTACTTTAAAAAAATATACTATTTTCTAGTTTTATTAT
TTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTATTGAAATTTAA
AAAAAAAAACCCTTATTTCGTCCC
Found at i:22648317 original size:153 final size:152
Alignment explanation
Indices: 22647910--22648716 Score: 1191
Period size: 152 Copynumber: 5.3 Consensus size: 152
22647900 GTTTTTATTG
* * *
22647910 AAAGTAATAAAATCC-GGTAAAAAATACGAATAAAGGGCCGAAATAAGGGGTTTTTTT-AATTTA
1 AAAGTAATAAAATCCAGGGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTA
*
22647973 TTT-AAAAACACACTAAATGAATACATTTCAAACATAGTGTACTAAAATAATGTAAAATAATAAA
66 TTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
* *
22648037 ATTAGAAAATAGTATGTTTTTT
131 ACTAGAAAATAGTATATTTTTT
*
22648059 AAAGTAATAAAATCCAGGGAAAAAATATGAACAAAGGGCCGAAATAAGGGTTTTTTTTTAAATTT
1 AAAGTAATAAAATCCAGGGAAAAAATACGAACAAAGGGCCGAAATAAGGG-TTTTTTTTAAATTT
* * *
22648124 ATTT-AAAAACACAGTAAATTAATACATTTCAAACACAATGTACTAAAATAATGTAAAATAATAA
65 ATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
*
22648188 AATTAGAAAATAGTATATTTTTT
130 AACTAGAAAATAGTATATTTTTT
* *
22648211 AAAAGTAAT-AAATCCAAGGAAAAAAATATGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATT
1 -AAAGTAATAAAATCC-AGGGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATT
* *
22648275 TATTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
64 TATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
*
22648340 AAA-TACGAAAATAATATATTTTTATT
129 AAACTA-GAAAATAGTATA-TTTT-TT
* *
22648366 GAAAGTAATAAAATCC-GGGAAAAAATACGAACAAATGGCCGAAATAAGGGTTTTTTTTAATTTT
1 -AAAGTAATAAAATCCAGGGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTT
* *
22648430 AATAAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
65 ATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
22648495 AACTAGAAAATAGTATATTTTTT
130 AACTAGAAAATAGTATATTTTTT
* * * *
22648518 AAAGTAATAAAATCCGGGGAAATAAATACAAACAAATGGCCGAAATAAGAGTTTTTTTT-AATTT
1 AAAGTAATAAAATCCAGGGAAA-AAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTT
* * *
22648582 CA-ATAAAAAACATACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAAAAATA
65 -ATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
*
22648646 AAACTAGAAAATAGTATTTTTTTTT
129 AAACTAGAAAATAGTA-TATTTTTT
* *
22648671 AAAGTAATAAAATCCAGGGAAAAAATATGAACAAAGGGCTGAAATA
1 AAAGTAATAAAATCCAGGGAAAAAATACGAACAAAGGGCCGAAATA
22648717 CGAACATGTT
Statistics
Matches: 608, Mismatches: 35, Indels: 27
0.91 0.05 0.04
Matches are distributed among these distances:
149 15 0.02
150 31 0.05
151 22 0.04
152 219 0.36
153 181 0.30
154 122 0.20
155 12 0.02
156 6 0.01
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.29
Consensus pattern (152 bp):
AAAGTAATAAAATCCAGGGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTA
TTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAA
ACTAGAAAATAGTATATTTTTT
Found at i:22651224 original size:14 final size:13
Alignment explanation
Indices: 22651205--22651238 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
22651195 TTAAATTTAT
22651205 TTAAAATAAATAAA
1 TTAAAAT-AATAAA
*
22651219 TTAAAATCATAAA
1 TTAAAATAATAAA
22651232 TTAAAAT
1 TTAAAAT
22651239 TTACATTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (13 bp):
TTAAAATAATAAA
Found at i:22651292 original size:42 final size:43
Alignment explanation
Indices: 22651246--22651326 Score: 96
Period size: 42 Copynumber: 1.9 Consensus size: 43
22651236 AATTTACATT
* *
22651246 TATTAAATAATCAAA-TTATAATTTATATTT-AAT-TTTAAGTAA
1 TATTAAA-AATAAAATTTATAACTTA-ATTTCAATATTTAAGTAA
*
22651288 TATTATAAATAAAATTTATAACTTAATTTCAATATTTAA
1 TATTAAAAATAAAATTTATAACTTAATTTCAATATTTAA
22651327 TTTTTTTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
41 10 0.30
42 18 0.55
43 5 0.15
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (43 bp):
TATTAAAAATAAAATTTATAACTTAATTTCAATATTTAAGTAA
Found at i:22655816 original size:15 final size:15
Alignment explanation
Indices: 22655796--22655824 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
22655786 AAAAGATGTA
22655796 TTTTCTTTTTTCTTC
1 TTTTCTTTTTTCTTC
22655811 TTTTCTTTTTTCTT
1 TTTTCTTTTTTCTT
22655825 TTCTTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTCTTTTTTCTTC
Found at i:22655825 original size:12 final size:12
Alignment explanation
Indices: 22655796--22655833 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
22655786 AAAAGATGTA
22655796 TTTTC-TTT-TT
1 TTTTCTTTTCTT
*
22655806 TCTTCTTTTCTT
1 TTTTCTTTTCTT
22655818 TTTTCTTTTCTT
1 TTTTCTTTTCTT
22655830 TTTT
1 TTTT
22655834 TGCTGCCGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 4 0.17
11 3 0.12
12 17 0.71
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTCTTTTCTT
Found at i:22655833 original size:7 final size:7
Alignment explanation
Indices: 22655796--22655826 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
22655786 AAAAGATGTA
22655796 TTTTCTT
1 TTTTCTT
22655803 TTTTCTT
1 TTTTCTT
22655810 CTTTTCTT
1 -TTTTCTT
22655818 TTTTCTT
1 TTTTCTT
22655825 TT
1 TT
22655827 CTTTTTTTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTCTT
Found at i:22656808 original size:87 final size:87
Alignment explanation
Indices: 22656703--22657373 Score: 961
Period size: 87 Copynumber: 7.6 Consensus size: 87
22656693 ACTTGTAATC
* * * *
22656703 TTCGATCTGCTTCACTGTTGACGCAGGAGGGCAAGATCTGCTATCTTTAACCAGCTCCACTGTAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
* *
22656768 CTGATGGAGGCAAGGCCTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* * * *
22656790 TTCGATCTGCTTCGCTGTTAACACAGGAAGGCAACATCTGCTATCTTTAACCAACTCCACTGTAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
22656855 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* * *
22656877 TTTGATCTGTTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
22656942 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* *
22656964 TTCGATCTGCTTCGCTGTTAACGCATGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
* *
22657029 CTGATGGAGGCAAGGTTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
22657051 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
22657116 TCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
**
22657138 TTCGATCTGCTTCGCTGGGCTTCGCTGTTAACATAGGAAGGCAAGATCTGCTATCTTTAACCAGC
1 TTCGA------T--CT--GCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGC
22657203 TCCACTGCAACCGATGGA-GCTAAGGCTTTGTTT
56 TCCACTGCAACCGATGGAGGC-AAGGCTTTG-TT
* * *
22657236 TTGCG-TCTGCTTCGCTGTTAACGTAGGAAGGCAAGATCTGTTATCTTTAACTAGCTCCACTGCA
1 TT-CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCA
22657300 ACCGATGGAGGCAAGGCTTTGTT
65 ACCGATGGAGGCAAGGCTTTGTT
** * *
22657323 TTTTATCTGCTTCGTTGTTAACGCAGGAAGACAAGATCTGCT-TCTTTAACC
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACC
22657374 TAAAATGAAT
Statistics
Matches: 531, Mismatches: 38, Indels: 31
0.88 0.06 0.05
Matches are distributed among these distances:
86 8 0.02
87 365 0.69
88 71 0.13
89 2 0.00
90 2 0.00
92 1 0.00
93 1 0.00
95 2 0.00
96 2 0.00
97 71 0.13
98 4 0.01
99 2 0.00
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30
Consensus pattern (87 bp):
TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
CCGATGGAGGCAAGGCTTTGTT
Found at i:22656998 original size:43 final size:43
Alignment explanation
Indices: 22656949--22657085 Score: 100
Period size: 43 Copynumber: 3.2 Consensus size: 43
22656939 CAACCGATGG
*
22656949 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCATGA
1 AGGCAAGGATTTGTTTTCGATCTGCTTCGCTGTTAACGCATGA
* ** * * * * ** *
22656992 AGGCAA-GATCTGCTATCTTTAACCAGCTCCACT-ACAACTG-ATGG
1 AGGCAAGGATTTG-T-T-TTCGATCTGCTTCGCTGTTAAC-GCATGA
* *
22657036 AGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
1 AGGCAAGGATTTGTTTTCGATCTGCTTCGCTGTTAACGCATGA
22657079 AGGCAAG
1 AGGCAAG
22657086 ATCTGCTATC
Statistics
Matches: 64, Mismatches: 23, Indels: 14
0.63 0.23 0.14
Matches are distributed among these distances:
42 15 0.23
43 20 0.31
44 14 0.22
45 15 0.23
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (43 bp):
AGGCAAGGATTTGTTTTCGATCTGCTTCGCTGTTAACGCATGA
Found at i:22657308 original size:185 final size:184
Alignment explanation
Indices: 22656972--22657336 Score: 581
Period size: 185 Copynumber: 2.0 Consensus size: 184
22656962 TTTTCGATCT
* * *
22656972 GCTTCGCTGTTAACGCATGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACTGATGGA
1 GCTTCGCTGTTAACACAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGA
*
22657037 GGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAAC
66 GGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAAC
*
22657102 CAGCTCCACTGCAATCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGG
131 CAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGG
* *
22657156 GCTTCGCTGTTAACATAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGA
1 GCTTCGCTGTTAACACAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGA
* *
22657221 -GCTAAGGCTTTGTTTTTGCG-TCTGCTTCGCTGTTAACGTAGGAAGGCAAGATCTGTTATCTTT
66 GGC-AAGGCTTTG-TTTT-CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTT
* **
22657284 AACTAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTTTATCTGCTTCG
128 AACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCG
22657337 TTGTTAACGC
Statistics
Matches: 166, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
183 2 0.01
184 68 0.41
185 94 0.57
186 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (184 bp):
GCTTCGCTGTTAACACAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGA
GGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAAC
CAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGG
Found at i:22659008 original size:29 final size:29
Alignment explanation
Indices: 22658925--22659020 Score: 86
Period size: 29 Copynumber: 3.1 Consensus size: 29
22658915 TTTTCTTTTC
22658925 TTTTTCTCTTTTCATATTTTATTTTGACTTTGA
1 TTTTT-TCTTTTC-T-TTTT-TTTTGACTTTGA
* **
22658958 TTGATTTCTCTTT-TTTGCTTTTGACTTTGA
1 TT-TTTTCT-TTTCTTTTTTTTTGACTTTGA
**
22658988 TTTTTTCTTTTCTTTTTTTTTGTTTTTGA
1 TTTTTTCTTTTCTTTTTTTTTGACTTTGA
22659017 TTTT
1 TTTT
22659021 GATTTTTTTC
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
28 3 0.06
29 22 0.42
30 14 0.27
31 2 0.04
32 1 0.02
33 5 0.10
34 5 0.10
ACGTcount: A:0.09, C:0.10, G:0.08, T:0.72
Consensus pattern (29 bp):
TTTTTTCTTTTCTTTTTTTTTGACTTTGA
Found at i:22659015 original size:35 final size:35
Alignment explanation
Indices: 22658968--22659044 Score: 111
Period size: 35 Copynumber: 2.2 Consensus size: 35
22658958 TTGATTTCTC
*
22658968 TTTTTTGCTTTTGACTTTGA-TTTTTTCTTTTCTTT
1 TTTTTTGCTTTTGACTTTGATTTTTTTC-TCTCTTT
* *
22659003 TTTTTTGTTTTTGATTTTGATTTTTTTCTCTCTTT
1 TTTTTTGCTTTTGACTTTGATTTTTTTCTCTCTTT
22659038 TTTTTTG
1 TTTTTTG
22659045 AATCTGAACC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 31 0.82
36 7 0.18
ACGTcount: A:0.05, C:0.09, G:0.09, T:0.77
Consensus pattern (35 bp):
TTTTTTGCTTTTGACTTTGATTTTTTTCTCTCTTT
Found at i:22662294 original size:265 final size:265
Alignment explanation
Indices: 22661815--22662347 Score: 960
Period size: 265 Copynumber: 2.0 Consensus size: 265
22661805 GTTTGTCCTT
22661815 CTTGCAGGTGCGACATACAGAAGGTGGACGTGGCACGTACGGAGGCGCGTGAGAGGGCAAGGGCT
1 CTTGCAGGTGCGACATACAGAAGGTGGACGTGGCACGTACGGAGGCGCGTGAGAGGGCAAGGGCT
* *
22661880 CAGAGCATACGGAGGCCAGCTGGAGGAGACGCATGCACGCAGAGGCGCAGCACGCACGGACGAGG
66 CAGAGCATACGGAGGCCAGCTGGAGGAGACGCATGCACGCAGAGGCGCAGCACGCACGAAAGAGG
22661945 CCCTGGGTTCGACGGCGCTGGAAGCTGTTTGGTGCTAGGGTTTCTGGTTGTGTTGGGCTGCGTTG
131 CCCTGGGTTCGACGGCGCTGGAAGCTGTTTGGTGCTAGGGTTTCTGGTTGTGTTGGGCTGCGTTG
22662010 GGCCATGATAGTTAGGCTAGACTAGTGATTGGGCTAGAGGGTTAGGTCTTTGTAA-ATGGACTAT
196 GGCCATGATAGTTAGGCTAGACTAGTGATTGGGCTAGAGGGTTAGGTCTTTGTAAGA-GGACTAT
22662074 TTTAGA
260 TTTAGA
* *
22662080 CTTGCCGGTGCGACATACGGAAGGTGGACGTGGCACGTACGGAGGCGCGTGAGAGGGCAAGGGCT
1 CTTGCAGGTGCGACATACAGAAGGTGGACGTGGCACGTACGGAGGCGCGTGAGAGGGCAAGGGCT
* *
22662145 CAGAGCGTACGGAGGCCAGCTGGAGGAGACGCATGCATGCAGAGGCGCAGCACGCACGAAAGAGG
66 CAGAGCATACGGAGGCCAGCTGGAGGAGACGCATGCACGCAGAGGCGCAGCACGCACGAAAGAGG
* * *
22662210 CCCTGGGTTCGACGGTGTTGGAAGCTGTTTGGTGCTAGGGTTTCTGGTTGTGTTGGGTTGCGTTG
131 CCCTGGGTTCGACGGCGCTGGAAGCTGTTTGGTGCTAGGGTTTCTGGTTGTGTTGGGCTGCGTTG
*
22662275 GGCCATGATAGTTAGGCTAGACTAGTGATTGGGCTGGAGGGTTAGGTCTTTGTAAGAGGACTATT
196 GGCCATGATAGTTAGGCTAGACTAGTGATTGGGCTAGAGGGTTAGGTCTTTGTAAGAGGACTATT
22662340 TTAGA
261 TTAGA
22662345 CTT
1 CTT
22662348 TGGTTTTTAT
Statistics
Matches: 257, Mismatches: 10, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
265 256 1.00
266 1 0.00
ACGTcount: A:0.20, C:0.18, G:0.39, T:0.22
Consensus pattern (265 bp):
CTTGCAGGTGCGACATACAGAAGGTGGACGTGGCACGTACGGAGGCGCGTGAGAGGGCAAGGGCT
CAGAGCATACGGAGGCCAGCTGGAGGAGACGCATGCACGCAGAGGCGCAGCACGCACGAAAGAGG
CCCTGGGTTCGACGGCGCTGGAAGCTGTTTGGTGCTAGGGTTTCTGGTTGTGTTGGGCTGCGTTG
GGCCATGATAGTTAGGCTAGACTAGTGATTGGGCTAGAGGGTTAGGTCTTTGTAAGAGGACTATT
TTAGA
Found at i:22666553 original size:49 final size:50
Alignment explanation
Indices: 22666353--22666594 Score: 315
Period size: 50 Copynumber: 4.8 Consensus size: 50
22666343 GATAATAACA
* * * ** * *
22666353 TGCCAAAGCCATGTCCCAAACATAGTCTTACATGGGATATTCTCCTATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * * * **
22666404 TGCCCATGCAATGTCCCAGACATGGTTTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
22666454 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTTATTTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
22666504 TGCCAATGCCATGT-CCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
22666553 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
22666595 TTACCCAAAT
Statistics
Matches: 164, Mismatches: 26, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
49 45 0.27
50 90 0.55
51 29 0.18
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:22666559 original size:99 final size:100
Alignment explanation
Indices: 22666353--22666595 Score: 353
Period size: 99 Copynumber: 2.4 Consensus size: 100
22666343 GATAATAACA
* * ** ** *
22666353 TGCCAAAGCCATGTCCCAAACATAGTCTTACATGGGATATTCTCCTATCGGTGCCCATGCAATGT
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGA-CCTCTTATATCGGTGCCAATGCAATGT
* *
22666418 CCCAGACATGGTTTTACGGGGGACCTCTCATCTCGG
65 CCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
22666454 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTTATTTCGGTGCCAATGCCATGT-
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTTATATCGGTGCCAATGCAATGTC
*
22666518 CCAGACATGGTCTTACATGGGACCTCTCATCTCGG
66 CCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
*
22666553 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTT
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTT
22666596 TACCCAAATG
Statistics
Matches: 129, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
99 74 0.57
100 20 0.16
101 35 0.27
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (100 bp):
TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTTATATCGGTGCCAATGCAATGTC
CCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:22672421 original size:50 final size:50
Alignment explanation
Indices: 22672296--22672639 Score: 382
Period size: 50 Copynumber: 6.8 Consensus size: 50
22672286 GATAATAACA
* * ** * * *
22672296 TGCCAAAGCCATATCCCAGACATGGTCTTACATGGGATGTTCTAATATCGT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * ** *
22672347 TACCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
22672397 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * ** * * *
22672447 TGCCAATGTCATATCCCAGACATGGTCTTACATGGGATGTTCTAATATCGT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * ** *
22672498 TACCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
22672548 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
22672598 TGCCAATGTCATATCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
22672640 TTACCCAAAT
Statistics
Matches: 238, Mismatches: 54, Indels: 3
0.81 0.18 0.01
Matches are distributed among these distances:
50 169 0.71
51 69 0.29
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:22672509 original size:101 final size:100
Alignment explanation
Indices: 22672298--22672639 Score: 310
Period size: 101 Copynumber: 3.4 Consensus size: 100
22672288 TAATAACATG
* * ** * * * * * *
22672298 CCAAAGCCATATCCCAGACATGGTCTTACATGGGATGTTCTAATATC-GTTACCCATGCCATGTC
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCAG-TGCCAAAGCCATATC
** * * * ** *
22672362 CCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTG
64 CCAGACATGGTCTTACATGAGACCTCTAATATCAGTA
* * * *
22672399 CCAAAGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCAGTGCCAATGTCATATCCC
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAAAGCCATATCCC
* **
22672464 AGACATGGTCTTACATGGGATGTTCTAATATC-GTTA
66 AGACATGGTCTTACATGAGA-CCTCTAATATCAG-TA
* ** ** *
22672500 CCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAAAGCCATGTCCC
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAAAGCCATATCCC
* * *
22672565 AGACATGGTCTTACATGAGACCTCTCATCTCAGTG
66 AGACATGGTCTTACATGAGACCTCTAATATCAGTA
* *
22672600 CCAATGTCATATCCCAGACATGGTCTTACATGGGACCTCT
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
22672640 TTACCCAAAT
Statistics
Matches: 198, Mismatches: 39, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
100 82 0.41
101 116 0.59
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (100 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAAAGCCATATCCC
AGACATGGTCTTACATGAGACCTCTAATATCAGTA
Found at i:22672570 original size:151 final size:151
Alignment explanation
Indices: 22672296--22672634 Score: 660
Period size: 151 Copynumber: 2.2 Consensus size: 151
22672286 GATAATAACA
* *
22672296 TGCCAAAGCCATATCCCAGACATGGTCTTACATGGGATGTTCTAATATCGTTACCCATGCCATGT
1 TGCCAATGTCATATCCCAGACATGGTCTTACATGGGATGTTCTAATATCGTTACCCATGCCATGT
22672361 CCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAAAGCCATGTCCCAGACATGGTCTT
66 CCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAAAGCCATGTCCCAGACATGGTCTT
22672426 ACATGAGACCTCTCATCTCAG
131 ACATGAGACCTCTCATCTCAG
22672447 TGCCAATGTCATATCCCAGACATGGTCTTACATGGGATGTTCTAATATCGTTACCCATGCCATGT
1 TGCCAATGTCATATCCCAGACATGGTCTTACATGGGATGTTCTAATATCGTTACCCATGCCATGT
22672512 CCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAAAGCCATGTCCCAGACATGGTCTT
66 CCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAAAGCCATGTCCCAGACATGGTCTT
22672577 ACATGAGACCTCTCATCTCAG
131 ACATGAGACCTCTCATCTCAG
22672598 TGCCAATGTCATATCCCAGACATGGTCTTACATGGGA
1 TGCCAATGTCATATCCCAGACATGGTCTTACATGGGA
22672635 CCTCTTTACC
Statistics
Matches: 186, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
151 186 1.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (151 bp):
TGCCAATGTCATATCCCAGACATGGTCTTACATGGGATGTTCTAATATCGTTACCCATGCCATGT
CCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAAAGCCATGTCCCAGACATGGTCTT
ACATGAGACCTCTCATCTCAG
Found at i:22677317 original size:18 final size:18
Alignment explanation
Indices: 22677282--22677320 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
22677272 GTCAAGCCAT
* **
22677282 TTTAGGGTTTTAGTTTAG
1 TTTAGGATTTTAACTTAG
22677300 TTTAGGATTTTAACTTAG
1 TTTAGGATTTTAACTTAG
22677318 TTT
1 TTT
22677321 TATTTTATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.03, G:0.21, T:0.56
Consensus pattern (18 bp):
TTTAGGATTTTAACTTAG
Found at i:22677368 original size:28 final size:28
Alignment explanation
Indices: 22677314--22677369 Score: 96
Period size: 27 Copynumber: 2.0 Consensus size: 28
22677304 GGATTTTAAC
22677314 TTAGTTTTATTTTATTTTAAAATTTTTT
1 TTAGTTTTATTTTATTTTAAAATTTTTT
*
22677342 TTAGTTTTA-TTTATTTTAAAATATTTT
1 TTAGTTTTATTTTATTTTAAAATTTTTT
22677369 T
1 T
22677370 ATTTCTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 18 0.67
28 9 0.33
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.70
Consensus pattern (28 bp):
TTAGTTTTATTTTATTTTAAAATTTTTT
Found at i:22677378 original size:27 final size:27
Alignment explanation
Indices: 22677314--22677379 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
22677304 GGATTTTAAC
*
22677314 TTAGTTTTATTTTATTTTAAAATTTTTT
1 TTAGTTTTA-TTTATTTTAAAATTATTT
22677342 TTAGTTTTATTTATTTTAAAA-TATTT
1 TTAGTTTTATTTATTTTAAAATTATTT
*
22677368 TTATTTCTTATT
1 TTAGTT-TTATT
22677380 ATTCAACTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
26 9 0.26
27 17 0.49
28 9 0.26
ACGTcount: A:0.26, C:0.02, G:0.03, T:0.70
Consensus pattern (27 bp):
TTAGTTTTATTTATTTTAAAATTATTT
Found at i:22684112 original size:19 final size:19
Alignment explanation
Indices: 22684088--22684126 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
22684078 TGATCGTCAA
*
22684088 TGTAGATATATTTTAATCT
1 TGTAGATAGATTTTAATCT
*
22684107 TGTAGATAGGTTTTAATCT
1 TGTAGATAGATTTTAATCT
22684126 T
1 T
22684127 AACCGTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.28, C:0.05, G:0.15, T:0.51
Consensus pattern (19 bp):
TGTAGATAGATTTTAATCT
Found at i:22687885 original size:15 final size:15
Alignment explanation
Indices: 22687865--22687895 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
22687855 GTTTTAGTTA
22687865 ATTTTTAATTAATGT
1 ATTTTTAATTAATGT
*
22687880 ATTTTTAATTATTGT
1 ATTTTTAATTAATGT
22687895 A
1 A
22687896 ATTAATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.61
Consensus pattern (15 bp):
ATTTTTAATTAATGT
Found at i:22694533 original size:63 final size:63
Alignment explanation
Indices: 22694457--22694581 Score: 169
Period size: 63 Copynumber: 2.0 Consensus size: 63
22694447 AGATAGAGAT
* *
22694457 ATGGATGTAACTTACTAGACTGATATTAGATCAAACTAGACCCAAGAAGAATAGATCCTGAAC
1 ATGGATGTAACTTACTAGACTGATAGTAGATCAAACTAGACCCAAGAAAAATAGATCCTGAAC
* * *** * *
22694520 ATGGATGTGACTTACTGGACTGATAGTAGATTGGACTAGGCCCAAGAAAAATAGATGCTGAA
1 ATGGATGTAACTTACTAGACTGATAGTAGATCAAACTAGACCCAAGAAAAATAGATCCTGAA
22694582 AATCCGTTTA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 53 1.00
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.24
Consensus pattern (63 bp):
ATGGATGTAACTTACTAGACTGATAGTAGATCAAACTAGACCCAAGAAAAATAGATCCTGAAC
Found at i:22698641 original size:13 final size:13
Alignment explanation
Indices: 22698625--22698654 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
22698615 TTTTTACCTT
*
22698625 TTAATTTTCTTAG
1 TTAATTTACTTAG
22698638 TTAATTTACTTAG
1 TTAATTTACTTAG
22698651 TTAA
1 TTAA
22698655 AATCTAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (13 bp):
TTAATTTACTTAG
Found at i:22708960 original size:18 final size:20
Alignment explanation
Indices: 22708937--22708976 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
22708927 GAGGTGGCAA
22708937 TTTTTCT-AT-CACTTCAAT
1 TTTTTCTAATCCACTTCAAT
22708955 TTTTTCTCAATCCACTTCAAT
1 TTTTTCT-AATCCACTTCAAT
22708976 T
1 T
22708977 CCTCTTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.37
20 2 0.11
21 10 0.53
ACGTcount: A:0.23, C:0.25, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTTTCTAATCCACTTCAAT
Found at i:22714145 original size:54 final size:54
Alignment explanation
Indices: 22714087--22714232 Score: 157
Period size: 54 Copynumber: 2.7 Consensus size: 54
22714077 TGTGTCTTAA
* * * * *
22714087 ACCGTGTAACTCACTGAGTTGGGTCACATGACCGTGTCGCAGGTCGTGTGCCAG
1 ACCGTGTAACTCACTGACTTGGGACACACGACCGTGTCACAGGCCGTGTGCCAG
* * * *
22714141 ACCGTATAACTCTCTGACTTGTGACACACGACCGTGTCACAGGCCGTGTGCTAG
1 ACCGTGTAACTCACTGACTTGGGACACACGACCGTGTCACAGGCCGTGTGCCAG
** * ** *
22714195 GTCGTGTAACTCACTAACTTGATACACACGACTGTGTC
1 ACCGTGTAACTCACTGACTTGGGACACACGACCGTGTC
22714233 TTAAGCCGTG
Statistics
Matches: 75, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 75 1.00
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.25
Consensus pattern (54 bp):
ACCGTGTAACTCACTGACTTGGGACACACGACCGTGTCACAGGCCGTGTGCCAG
Found at i:22717237 original size:9 final size:8
Alignment explanation
Indices: 22717220--22717244 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
22717210 CCAAGTAGGA
22717220 TTATTTTT
1 TTATTTTT
22717228 TTATTTTT
1 TTATTTTT
22717236 TTATTTTT
1 TTATTTTT
22717244 T
1 T
22717245 GAATTCTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTATTTTT
Found at i:22727686 original size:15 final size:16
Alignment explanation
Indices: 22727666--22727695 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22727656 TTGTTTGGTT
22727666 CACCG-TTTGCTATTC
1 CACCGTTTTGCTATTC
22727681 CACCGTTTTGCTATT
1 CACCGTTTTGCTATT
22727696 ACTTGTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.13, C:0.30, G:0.13, T:0.43
Consensus pattern (16 bp):
CACCGTTTTGCTATTC
Found at i:22729619 original size:25 final size:25
Alignment explanation
Indices: 22729590--22729667 Score: 102
Period size: 25 Copynumber: 3.1 Consensus size: 25
22729580 TGAAGCAGCT
*
22729590 TTGAAGCAACTTGCTGCTATTGAAA
1 TTGAAGCAGCTTGCTGCTATTGAAA
* * * *
22729615 TTGAAGCAGTTTGCTGCTAATGCCAT
1 TTGAAGCAGCTTGCTGCTATTG-AAA
22729641 TTGAAGCAGCTTGCTGCTATTGAAA
1 TTGAAGCAGCTTGCTGCTATTGAAA
22729666 TT
1 TT
22729668 AAAGGACAAC
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
25 22 0.51
26 21 0.49
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.35
Consensus pattern (25 bp):
TTGAAGCAGCTTGCTGCTATTGAAA
Found at i:22729649 original size:26 final size:25
Alignment explanation
Indices: 22729589--22729664 Score: 89
Period size: 26 Copynumber: 3.0 Consensus size: 25
22729579 TTGAAGCAGC
* *
22729589 TTTGAAGCAACTTGCTGCTATTGAA
1 TTTGAAGCAGCTTGCTGCTAATGAA
* * *
22729614 ATTGAAGCAGTTTGCTGCTAATGCCA
1 TTTGAAGCAGCTTGCTGCTAATG-AA
*
22729640 TTTGAAGCAGCTTGCTGCTATTGAA
1 TTTGAAGCAGCTTGCTGCTAATGAA
22729665 ATTAAAGGAC
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
25 20 0.49
26 21 0.51
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.34
Consensus pattern (25 bp):
TTTGAAGCAGCTTGCTGCTAATGAA
Found at i:22730234 original size:55 final size:55
Alignment explanation
Indices: 22730167--22730283 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 55
22730157 TATATTATGA
* * * *
22730167 TTTTAGTAAATTA-ATATAAGAATAATTATATTCAAATTTTTATTAAATTATATAT
1 TTTTATTAAATTATATATAAGAATAATTATATT-AAAATATGATTAAATTATATAT
* * * *
22730222 TTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGATTAAATTATTTAT
1 TTTTATTAAATTATATATAAGAATAATTATATTAAAATATGATTAAATTATATAT
22730277 TATTTAT
1 T-TTTAT
22730284 ATTAATAATC
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
55 31 0.60
56 21 0.40
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (55 bp):
TTTTATTAAATTATATATAAGAATAATTATATTAAAATATGATTAAATTATATAT
Found at i:22730239 original size:16 final size:18
Alignment explanation
Indices: 22730202--22730237 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
22730192 TTATATTCAA
22730202 ATTTTTATTAAATTATAT
1 ATTTTTATTAAATTATAT
22730220 ATTTTTATTAAATTATAT
1 ATTTTTATTAAATTATAT
22730238 TTAATAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTTTTATTAAATTATAT
Found at i:22743544 original size:23 final size:23
Alignment explanation
Indices: 22743516--22743561 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
22743506 GAGGTGTCTG
*
22743516 ATACGACATATAAAATGCCTGAT
1 ATACGACACATAAAATGCCTGAT
*
22743539 ATACGACACATAAAGTGCCTGAT
1 ATACGACACATAAAATGCCTGAT
22743562 CAGCAAGGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (23 bp):
ATACGACACATAAAATGCCTGAT
Found at i:22743973 original size:3 final size:3
Alignment explanation
Indices: 22743961--22743990 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
22743951 TAGCTATGGA
22743961 AAT AAT -AT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
22743991 CTATTAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Done.