Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 76 of 205
Found at i:22744514 original size:9 final size:9
Alignment explanation
Indices: 22744502--22744563 Score: 65
Period size: 9 Copynumber: 6.9 Consensus size: 9
22744492 CTGCTGTTCT
*
22744502 TTTTGTTTC
1 TTTTATTTC
*
22744511 TTTTACTTC
1 TTTTATTTC
*
22744520 TTTTCTTTC
1 TTTTATTTC
22744529 TTTTATTTC
1 TTTTATTTC
22744538 -TTTAGTTTC
1 TTTTA-TTTC
22744547 TTTTATTTAC
1 TTTTATTT-C
22744557 -TTTATTT
1 TTTTATTT
22744564 TATTTACTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
8 4 0.09
9 36 0.80
10 5 0.11
ACGTcount: A:0.10, C:0.13, G:0.03, T:0.74
Consensus pattern (9 bp):
TTTTATTTC
Found at i:22744552 original size:18 final size:18
Alignment explanation
Indices: 22744506--22744560 Score: 74
Period size: 18 Copynumber: 3.0 Consensus size: 18
22744496 TGTTCTTTTT
* *
22744506 GTTTCTTTTACTTCTTTT
1 GTTTCTTTTATTTCTTTA
*
22744524 CTTTCTTTTATTTCTTTA
1 GTTTCTTTTATTTCTTTA
22744542 GTTTCTTTTATTTACTTTA
1 GTTTCTTTTATTT-CTTTA
22744561 TTTTATTTAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
18 27 0.84
19 5 0.16
ACGTcount: A:0.11, C:0.15, G:0.04, T:0.71
Consensus pattern (18 bp):
GTTTCTTTTATTTCTTTA
Found at i:22744814 original size:24 final size:24
Alignment explanation
Indices: 22744782--22744843 Score: 115
Period size: 24 Copynumber: 2.6 Consensus size: 24
22744772 ATATCATATA
*
22744782 TACCATACACTTGTATTAAATCAT
1 TACCATACATTTGTATTAAATCAT
22744806 TACCATACATTTGTATTAAATCAT
1 TACCATACATTTGTATTAAATCAT
22744830 TACCATACATTTGT
1 TACCATACATTTGT
22744844 CTTTATTTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.35, C:0.19, G:0.05, T:0.40
Consensus pattern (24 bp):
TACCATACATTTGTATTAAATCAT
Found at i:22746792 original size:2 final size:2
Alignment explanation
Indices: 22746787--22746816 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
22746777 TATATATATA
22746787 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
22746817 ATAATAATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:22750476 original size:13 final size:13
Alignment explanation
Indices: 22750432--22750477 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
22750422 AAGATTTAAT
22750432 ATTTATTAGTATA
1 ATTTATTAGTATA
*
22750445 ATATATATT--TATC
1 AT-T-TATTAGTATA
22750458 ATTTATTAGTATA
1 ATTTATTAGTATA
22750471 ATTTATT
1 ATTTATT
22750478 TGACCTACGA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
11 4 0.15
12 1 0.04
13 17 0.63
14 1 0.04
15 4 0.15
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (13 bp):
ATTTATTAGTATA
Found at i:22751862 original size:60 final size:61
Alignment explanation
Indices: 22751740--22751865 Score: 141
Period size: 61 Copynumber: 2.1 Consensus size: 61
22751730 CCTAAATATA
* * * *
22751740 AAAAAATTCAACAAATTTATCCCTCAATGTTAACAAAAATTTTCATTTTAGTTCCAATTCT
1 AAAAAATTCAACAAATTTAGCCCTCAATATTAACAAAAATTTTCAATTTAGTTCCAACTCT
* * * *
22751801 AAAAAATTCAATAAATTTGGCCGTCAATATTTAC-AAAATTATT-AATTTAG-TCCTAACTCT
1 AAAAAATTCAACAAATTTAGCCCTCAATATTAACAAAAATT-TTCAATTTAGTTCC-AACTCT
22751861 AAAAA
1 AAAAA
22751866 TTTAAAAATT
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
59 3 0.05
60 22 0.40
61 30 0.55
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.36
Consensus pattern (61 bp):
AAAAAATTCAACAAATTTAGCCCTCAATATTAACAAAAATTTTCAATTTAGTTCCAACTCT
Found at i:22753206 original size:2 final size:2
Alignment explanation
Indices: 22753199--22753240 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
22753189 CCCACCCCTC
22753199 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
22753241 TTTTCATTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:22759446 original size:33 final size:33
Alignment explanation
Indices: 22759406--22760081 Score: 349
Period size: 33 Copynumber: 20.8 Consensus size: 33
22759396 GTACCAACCC
* *
22759406 GCGCAGCCAAGTGCGAATCCATATGGCCAGCTT
1 GCGCAGCCAAGTGCTAATCCATATGGCCAGCAT
* * **
22759439 GCTCAGCCCAGTGCTAATCCATATGGCCAAAAT
1 GCGCAGCCAAGTGCTAATCCATATGGCCAGCAT
* * * *
22759472 GGGCAACCAAGTGCTAATCCCTATGGCCAGCCT
1 GCGCAGCCAAGTGCTAATCCATATGGCCAGCAT
* **
22759505 GCGCAGCCCAGTGCTAATCCATATGGCCAAAAT
1 GCGCAGCCAAGTGCTAATCCATATGGCCAGCAT
* * * *
22759538 GGGCAACCAAGTGCTAATCCCTATGGCCAGCCT
1 GCGCAGCCAAGTGCTAATCCATATGGCCAGCAT
* **
22759571 GCGCAGCCCAGTGCTAATCCATATGGCCAAAAT
1 GCGCAGCCAAGTGCTAATCCATATGGCCAGCAT
* * * *
22759604 GGGCAACCAAGTGCTAATCCCTATGGCCAGCCT
1 GCGCAGCCAAGTGCTAATCCATATGGCCAGCAT
* * **
22759637 GCGCAGCCCAGTGCTAACCCATATGGCCAAAAT
1 GCGCAGCCAAGTGCTAATCCATATGGCCAGCAT
* * *
22759670 GGGCA-CTCAAGTGCTAATCCCTATGGCCAGCCT
1 GCGCAGC-CAAGTGCTAATCCATATGGCCAGCAT
* * * ** ** *
22759703 GTGCAGCCCAGTGCTAACCCATACAGCCAAAAC
1 GCGCAGCCAAGTGCTAATCCATATGGCCAGCAT
* * * *
22759736 GGGCAGCCAAGTGCTAATCCCTATGGCCTGCCT
1 GCGCAGCCAAGTGCTAATCCATATGGCCAGCAT
* * * *
22759769 GCGCAACCCAGTGCAAACCCATATGGCCAG--T
1 GCGCAGCCAAGTGCTAATCCATATGGCCAGCAT
*
22759800 -------CAAGTGCTAATCCCTATGGCCAGCCA-
1 GCGCAGCCAAGTGCTAATCCATATGGCCAG-CAT
* * * * * * * *
22759826 ACACAACCAAATGCTATTCCTTATGGTCAATC-T
1 GCGCAGCCAAGTGCTAATCCATATGG-CCAGCAT
* * * * * * *
22759859 GCACAACCAAATGCTAATCCGTATGGTCAACCT
1 GCGCAGCCAAGTGCTAATCCATATGGCCAGCAT
* * * ** * *
22759892 GCACAACCAAATGCTAATCCATACAGCCAACCT
1 GCGCAGCCAAGTGCTAATCCATATGGCCAGCAT
** ** * *
22759925 GTACAGGTACA-TGCTAATCCATATGGCCAACCT
1 GCGCAGCCA-AGTGCTAATCCATATGGCCAGCAT
* ** *
22759958 GCTCAGCCGAA-TGCTAATCCATACAGCCAGCCT
1 GCGCAGCC-AAGTGCTAATCCATATGGCCAGCAT
* * ** *
22759991 ACACAGCCGAA-TGCTAATCCATACAGCCAGCCT
1 GCGCAGCC-AAGTGCTAATCCATATGGCCAGCAT
* * * * *
22760024 ACACAGCCGAA-TGCTAATCCATACGGCCAACCT
1 GCGCAGCC-AAGTGCTAATCCATATGGCCAGCAT
**
22760057 GTACAGCCAAGTGCTAATCCATATG
1 GCGCAGCCAAGTGCTAATCCATATG
22760082 CCCAACCCAC
Statistics
Matches: 501, Mismatches: 124, Indels: 36
0.76 0.19 0.05
Matches are distributed among these distances:
24 19 0.04
31 1 0.00
32 5 0.01
33 471 0.94
34 5 0.01
ACGTcount: A:0.29, C:0.33, G:0.20, T:0.19
Consensus pattern (33 bp):
GCGCAGCCAAGTGCTAATCCATATGGCCAGCAT
Found at i:22759497 original size:66 final size:66
Alignment explanation
Indices: 22759412--22759797 Score: 621
Period size: 66 Copynumber: 5.8 Consensus size: 66
22759402 ACCCGCGCAG
* * * * *
22759412 CCAAGTGCGAATCCATATGGCCAGCTTGCTCAGCCCAGTGCTAATCCATATGGCCAAAATGGGCA
1 CCAAGTGCTAATCCCTATGGCCAGCCTGCGCAGCCCAGTGCTAACCCATATGGCCAAAATGGGCA
22759477 A
66 A
*
22759478 CCAAGTGCTAATCCCTATGGCCAGCCTGCGCAGCCCAGTGCTAATCCATATGGCCAAAATGGGCA
1 CCAAGTGCTAATCCCTATGGCCAGCCTGCGCAGCCCAGTGCTAACCCATATGGCCAAAATGGGCA
22759543 A
66 A
*
22759544 CCAAGTGCTAATCCCTATGGCCAGCCTGCGCAGCCCAGTGCTAATCCATATGGCCAAAATGGGCA
1 CCAAGTGCTAATCCCTATGGCCAGCCTGCGCAGCCCAGTGCTAACCCATATGGCCAAAATGGGCA
22759609 A
66 A
22759610 CCAAGTGCTAATCCCTATGGCCAGCCTGCGCAGCCCAGTGCTAACCCATATGGCCAAAATGGGC-
1 CCAAGTGCTAATCCCTATGGCCAGCCTGCGCAGCCCAGTGCTAACCCATATGGCCAAAATGGGCA
22759674 A
66 A
* ** *
22759675 CTCAAGTGCTAATCCCTATGGCCAGCCTGTGCAGCCCAGTGCTAACCCATACAGCCAAAACGGGC
1 C-CAAGTGCTAATCCCTATGGCCAGCCTGCGCAGCCCAGTGCTAACCCATATGGCCAAAATGGGC
*
22759740 AG
65 AA
* * *
22759742 CCAAGTGCTAATCCCTATGGCCTGCCTGCGCAACCCAGTGCAAACCCATATGGCCA
1 CCAAGTGCTAATCCCTATGGCCAGCCTGCGCAGCCCAGTGCTAACCCATATGGCCA
22759798 GTCAAGTGCT
Statistics
Matches: 302, Mismatches: 16, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
65 2 0.01
66 299 0.99
67 1 0.00
ACGTcount: A:0.27, C:0.33, G:0.22, T:0.18
Consensus pattern (66 bp):
CCAAGTGCTAATCCCTATGGCCAGCCTGCGCAGCCCAGTGCTAACCCATATGGCCAAAATGGGCA
A
Found at i:22760912 original size:18 final size:17
Alignment explanation
Indices: 22760891--22761116 Score: 104
Period size: 18 Copynumber: 13.8 Consensus size: 17
22760881 TGGGGATGAA
*
22760891 CATGGGTATGAACCCAGG
1 CATGGGGATGAA-CCAGG
*
22760909 CATGGGGATGAA-CA-A
1 CATGGGGATGAACCAGG
*
22760924 CATGGGCATGAATCCAGG
1 CATGGGGATGAA-CCAGG
* *
22760942 CATGGGGATG-AGCA-A
1 CATGGGGATGAACCAGG
* *
22760957 TATGGGCATGAATCCAGG
1 CATGGGGATGAA-CCAGG
* *
22760975 CATGGGGATG-AGCA-A
1 CATGGGGATGAACCAGG
* *
22760990 TATGGGCATGAATCCAGG
1 CATGGGGATGAA-CCAGG
*
22761008 CATGGGGATG-AGCA-G
1 CATGGGGATGAACCAGG
* * *
22761023 TATGGGCATGAATCAAGG
1 CATGGGGATGAA-CCAGG
22761041 CATGGGGATG-A--A--
1 CATGGGGATGAACCAGG
*
22761053 CATGGGCATGAATCCAGG
1 CATGGGGATGAA-CCAGG
*
22761071 CATGGGGATGAA-CA-A
1 CATGGGGATGAACCAGG
* *
22761086 CATGGGCATGAATCGAGG
1 CATGGGGATGAA-CCAGG
*
22761104 CATGGAGATGAAC
1 CATGGGGATGAAC
22761117 AATATAGGCA
Statistics
Matches: 151, Mismatches: 36, Indels: 43
0.66 0.16 0.19
Matches are distributed among these distances:
12 9 0.06
13 1 0.01
14 1 0.01
15 47 0.31
16 14 0.09
17 13 0.09
18 66 0.44
ACGTcount: A:0.31, C:0.16, G:0.36, T:0.17
Consensus pattern (17 bp):
CATGGGGATGAACCAGG
Found at i:22760935 original size:33 final size:33
Alignment explanation
Indices: 22760889--22761150 Score: 352
Period size: 33 Copynumber: 8.0 Consensus size: 33
22760879 AATGGGGATG
* *
22760889 AACATGGGTATGAACCCAGGCATGGGGATGAAC
1 AACATGGGCATGAATCCAGGCATGGGGATGAAC
*
22760922 AACATGGGCATGAATCCAGGCATGGGGATGAGC
1 AACATGGGCATGAATCCAGGCATGGGGATGAAC
* *
22760955 AATATGGGCATGAATCCAGGCATGGGGATGAGC
1 AACATGGGCATGAATCCAGGCATGGGGATGAAC
* *
22760988 AATATGGGCATGAATCCAGGCATGGGGATGAGC
1 AACATGGGCATGAATCCAGGCATGGGGATGAAC
** *
22761021 AGTATGGGCATGAATCAAGGCATGGGGATG---
1 AACATGGGCATGAATCCAGGCATGGGGATGAAC
22761051 AACATGGGCATGAATCCAGGCATGGGGATGAAC
1 AACATGGGCATGAATCCAGGCATGGGGATGAAC
* *
22761084 AACATGGGCATGAATCGAGGCATGGAGATGAAC
1 AACATGGGCATGAATCCAGGCATGGGGATGAAC
* * *
22761117 AATATAGGCATG-AGCGCAGGCATGGGGATGAAC
1 AACATGGGCATGAATC-CAGGCATGGGGATGAAC
22761150 A
1 A
22761151 TGGGAATGGG
Statistics
Matches: 209, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
30 27 0.13
32 2 0.01
33 180 0.86
ACGTcount: A:0.32, C:0.16, G:0.35, T:0.16
Consensus pattern (33 bp):
AACATGGGCATGAATCCAGGCATGGGGATGAAC
Found at i:22761062 original size:129 final size:130
Alignment explanation
Indices: 22760892--22761147 Score: 381
Period size: 129 Copynumber: 2.0 Consensus size: 130
22760882 GGGGATGAAC
* * *
22760892 ATGGGTATGAACCCAGGCATGGGGATGAACAACATGGGCATGAATCCAGGCATGGGGATGAGCAA
1 ATGGGCATGAACCAAGGCATGGGGATG-A-AACATGGGCATGAATCCAGGCATGGGGATGAACAA
* * * * *
22760957 TATGGGCATGAATCCAGGCATGGGGATGAGCAATATGGGCATGAATC-CAGGCATGGGGATGAGC
64 CATGGGCATGAATCCAGGCATGGAGATGAACAATATAGGCATG-AGCGCAGGCATGGGGATGAGC
22761021 AGT
128 AGT
*
22761024 ATGGGCATGAATCAAGGCATGGGGATG-AACATGGGCATGAATCCAGGCATGGGGATGAACAACA
1 ATGGGCATGAACCAAGGCATGGGGATGAAACATGGGCATGAATCCAGGCATGGGGATGAACAACA
*
22761088 TGGGCATGAATCGAGGCATGGAGATGAACAATATAGGCATGAGCGCAGGCATGGGGATGA
66 TGGGCATGAATCCAGGCATGGAGATGAACAATATAGGCATGAGCGCAGGCATGGGGATGA
22761148 ACATGGGAAT
Statistics
Matches: 113, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
128 2 0.02
129 87 0.77
132 24 0.21
ACGTcount: A:0.32, C:0.15, G:0.36, T:0.17
Consensus pattern (130 bp):
ATGGGCATGAACCAAGGCATGGGGATGAAACATGGGCATGAATCCAGGCATGGGGATGAACAACA
TGGGCATGAATCCAGGCATGGAGATGAACAATATAGGCATGAGCGCAGGCATGGGGATGAGCAGT
Found at i:22768066 original size:18 final size:18
Alignment explanation
Indices: 22768043--22768078 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
22768033 ATGTTTAGAG
22768043 AGGGTTACTAATCAAGAT
1 AGGGTTACTAATCAAGAT
22768061 AGGGTTACTAATCAAGAT
1 AGGGTTACTAATCAAGAT
22768079 CAAATAACGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.28
Consensus pattern (18 bp):
AGGGTTACTAATCAAGAT
Found at i:22768537 original size:11 final size:11
Alignment explanation
Indices: 22768521--22768578 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
22768511 TATGCAACTT
22768521 TTTTTTTGCGG
1 TTTTTTTGCGG
22768532 TTTTTTTTGC-G
1 -TTTTTTTGCGG
* *
22768543 -CTTTTTGC-T
1 TTTTTTTGCGG
22768552 TTTTTTTGCGG
1 TTTTTTTGCGG
*
22768563 TTTTTTTGCGC
1 TTTTTTTGCGG
22768574 TTTTT
1 TTTTT
22768579 GCTTTTTTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
9 7 0.18
10 7 0.18
11 16 0.41
12 9 0.23
ACGTcount: A:0.00, C:0.12, G:0.19, T:0.69
Consensus pattern (11 bp):
TTTTTTTGCGG
Found at i:22768557 original size:31 final size:30
Alignment explanation
Indices: 22768520--22768588 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
22768510 GTATGCAACT
22768520 TTTTTTTTGCGGTTTTTTTTGCGCTTTTTGC
1 TTTTTTTTGCGG-TTTTTTTGCGCTTTTTGC
22768551 TTTTTTTTGCGGTTTTTTTGCGCTTTTTGC
1 TTTTTTTTGCGGTTTTTTTGCGCTTTTTGC
22768581 TTTTTTTT
1 TTTTTTTT
22768589 AAAGAATAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 26 0.68
31 12 0.32
ACGTcount: A:0.00, C:0.12, G:0.17, T:0.71
Consensus pattern (30 bp):
TTTTTTTTGCGGTTTTTTTGCGCTTTTTGC
Found at i:22775234 original size:46 final size:46
Alignment explanation
Indices: 22775184--22775291 Score: 126
Period size: 46 Copynumber: 2.3 Consensus size: 46
22775174 GTGTTTCTAT
* * * * *
22775184 TATTGATTTGGCGAGTATTATACTTGAGGGGTAGTAGTGTTTTTGC
1 TATTGACTTGGCGAGTAGTATACTCGAAGGGTACTAGTGTTTTTGC
* * * *
22775230 TATTGACTTGGTGAGTAGTATCCTCGAAGGGTACTAGTTTTTTTTC
1 TATTGACTTGGCGAGTAGTATACTCGAAGGGTACTAGTGTTTTTGC
*
22775276 TATTGACTTAGCGAGT
1 TATTGACTTGGCGAGT
22775292 TTGAAAGGCA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 51 1.00
ACGTcount: A:0.20, C:0.10, G:0.27, T:0.43
Consensus pattern (46 bp):
TATTGACTTGGCGAGTAGTATACTCGAAGGGTACTAGTGTTTTTGC
Found at i:22775337 original size:20 final size:20
Alignment explanation
Indices: 22775295--22775337 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
22775285 AGCGAGTTTG
*
22775295 AAAGGCAATGTCGAACTTGA
1 AAAGGCAATGTCGAACTTAA
* *
22775315 AAAGGCAGTGTCGAGCTTAA
1 AAAGGCAATGTCGAACTTAA
22775335 AAA
1 AAA
22775338 ATCTAGAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.42, C:0.14, G:0.26, T:0.19
Consensus pattern (20 bp):
AAAGGCAATGTCGAACTTAA
Found at i:22775701 original size:132 final size:131
Alignment explanation
Indices: 22775493--22775792 Score: 332
Period size: 132 Copynumber: 2.3 Consensus size: 131
22775483 ACACATGAAT
* *** * * *
22775493 AATAATTTTTTTACAATAATA-ATTTTTACCTCTCATTGGAGTATTCCTAAAAAGGCTAGAAGGT
1 AATAA-TTTTTTACAATAATATATTTTTACCTTTCATCAAAGTATGCCTAAAAAGACTAGAAGAT
* * * * * *
22775557 GCTCGCTGATTTATCAACGAGGTATATATGGCACGACATTTATCCCTGCGCAACACAGAGAAATA
65 GCTCGCTCATTTATCAACGAGGTATACATGGCACCACATTTATCCATGCACAACACAGAAAAATA
22775622 TC
130 TC
* * * *
22775624 AATAATTTTCTACAATAATATATTTTTTACCTTTCATCAAAGTGTGCCTGAAAAGACTAGTAGAT
1 AATAATTTTTTACAATAATATA-TTTTTACCTTTCATCAAAGTATGCCTAAAAAGACTAGAAGAT
* * * * ** * ** *
22775689 GCTTGCTCATTTATCGATGAGTTATACATGGTGCCACATTTATCTATGCATGACTCAGAAAAATA
65 GCTCGCTCATTTATCAACGAGGTATACATGGCACCACATTTATCCATGCACAACACAGAAAAATA
22775754 TC
130 TC
22775756 AATAATTTTTTACAATAATATATTTTTACCTTTCATC
1 AATAATTTTTTACAATAATATATTTTTACCTTTCATC
22775793 GGAGCGTGCC
Statistics
Matches: 139, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
130 14 0.10
131 21 0.15
132 104 0.75
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (131 bp):
AATAATTTTTTACAATAATATATTTTTACCTTTCATCAAAGTATGCCTAAAAAGACTAGAAGATG
CTCGCTCATTTATCAACGAGGTATACATGGCACCACATTTATCCATGCACAACACAGAAAAATAT
C
Found at i:22775875 original size:131 final size:132
Alignment explanation
Indices: 22775612--22775862 Score: 326
Period size: 131 Copynumber: 1.9 Consensus size: 132
22775602 CTGCGCAACA
* * *
22775612 CAGAGAAATATCAATAATTTTCTACAATAATATATTTTTTACCTTTCATCAAAGTGTGCCTGAAA
1 CAGAAAAATATCAATAATTTTCTACAATAATATATTTTTTACCTTTCATCAAAGCGTGCCTAAAA
* ** * * *
22775677 AGACTAGTAGATGCTTGCTCATTTATCGATGAGTTATACATGGTGCCACATTTATCTATGCATGA
66 AGACTAGAAGATGCTCACTCATTAATCGATGAGTTACACATGGTGCAACATTTATCTATGCATGA
22775742 CT
131 CT
* **
22775744 CAGAAAAATATCAATAATTTTTTACAATAATATA-TTTTTACCTTTCATCGGAGCGTGCCTAAAA
1 CAGAAAAATATCAATAATTTTCTACAATAATATATTTTTTACCTTTCATCAAAGCGTGCCTAAAA
** * * *
22775808 AGGTTAGAAGGTTCTCACTCATTAATCGGTGAAG-TACACATGGTGCAACATTTAT
66 AGACTAGAAGATGCTCACTCATTAATCGATG-AGTTACACATGGTGCAACATTTAT
22775863 ACTTGTGTGA
Statistics
Matches: 101, Mismatches: 17, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
131 67 0.66
132 34 0.34
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (132 bp):
CAGAAAAATATCAATAATTTTCTACAATAATATATTTTTTACCTTTCATCAAAGCGTGCCTAAAA
AGACTAGAAGATGCTCACTCATTAATCGATGAGTTACACATGGTGCAACATTTATCTATGCATGA
CT
Found at i:22780265 original size:50 final size:50
Alignment explanation
Indices: 22780157--22780403 Score: 246
Period size: 50 Copynumber: 4.8 Consensus size: 50
22780147 ATTTGGGTAA
*
22780157 AGAGATCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--TGAG---ATG
* *
22780213 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
** * * *
22780263 AGAGATCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
* * * * * * *
22780313 TGA-ACTCCCATGTAAGATCATATCTGGGATATGGCATTGGCAGT-ACAAG
1 AGAGA-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
* * * *
22780362 AAACATCCCATGTAAGACCATGTCTAGGACATGGCTTTGGCA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
22780404 TGTTATTATC
Statistics
Matches: 161, Mismatches: 28, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
49 37 0.23
50 80 0.50
53 4 0.02
55 1 0.01
56 39 0.24
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (50 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
Found at i:22781717 original size:242 final size:240
Alignment explanation
Indices: 22781294--22781779 Score: 857
Period size: 242 Copynumber: 2.0 Consensus size: 240
22781284 GTATAGAAAG
*
22781294 AATTAGAAGTTATAATTTATATTTTTTTGATTCCTTATTGAGTCTATTTTCAGTGGAAATAAGTA
1 AATTAGAAGTCATAATTTATATTTTTTTGATTCCTTATTGAGTCTATTTTCAGTGGAAATAAGTA
22781359 GGAAGTCTATAAAATGAGATAATTAATTTTTAGTGATGAGAGGTCAAGACTATCGAACAGTGAAA
66 GGAAGTCTATAAAATGAGATAATTAATTTTTAGTGATGAGAGGTCAAGACTATCGAACAGTGAAA
*
22781424 CGGGGGAGACTTTAACTAATAAACTGTACTAATCGGCCATCCCAAAAATTTTGACAATTTTATGG
131 CGGGGGAGACTTTAACTAATAAACTGTACTAATCGGCCATCCCAAAAATTTTGAAAATTTTATGG
22781489 TAAGAAGGTATATGAGTCTAGTTTTAGAGAAAATGTACGGATCTA
196 TAAGAAGGTATATGAGTCTAGTTTTAGAGAAAATGTACGGATCTA
* *
22781534 AATTAGAAGTCATAATTTAAATTTTTTTTTGATTCCTTATTGAGTCTATTTTTAGTGGAAATAAG
1 AATTAGAAGTCATAATTT--ATATTTTTTTGATTCCTTATTGAGTCTATTTTCAGTGGAAATAAG
* * *
22781599 TATGAAGTCTATAAAATGAGATAATTAATTTTTAGTGATGAGAGGTCAGGACTGTCGAACAGTGA
64 TAGGAAGTCTATAAAATGAGATAATTAATTTTTAGTGATGAGAGGTCAAGACTATCGAACAGTGA
22781664 AACGGGGGAGACTTTAACTAATAAACTGTACTAATCGGCCAAT-CCAAAAATTTTGAAAATTTTA
129 AACGGGGGAGACTTTAACTAATAAACTGTACTAATCGGCC-ATCCCAAAAATTTTGAAAATTTTA
* *
22781728 TGGTAAGAAGGTATATGAGTCTAGTTTTGGAGAAAATTTACGGATCTA
193 TGGTAAGAAGGTATATGAGTCTAGTTTTAGAGAAAATGTACGGATCTA
22781776 AATT
1 AATT
22781780 TCGAGTTTTG
Statistics
Matches: 234, Mismatches: 9, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
240 17 0.07
242 215 0.92
243 2 0.01
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (240 bp):
AATTAGAAGTCATAATTTATATTTTTTTGATTCCTTATTGAGTCTATTTTCAGTGGAAATAAGTA
GGAAGTCTATAAAATGAGATAATTAATTTTTAGTGATGAGAGGTCAAGACTATCGAACAGTGAAA
CGGGGGAGACTTTAACTAATAAACTGTACTAATCGGCCATCCCAAAAATTTTGAAAATTTTATGG
TAAGAAGGTATATGAGTCTAGTTTTAGAGAAAATGTACGGATCTA
Found at i:22790184 original size:26 final size:25
Alignment explanation
Indices: 22790147--22790206 Score: 77
Period size: 26 Copynumber: 2.4 Consensus size: 25
22790137 TTTTCTCGAG
* *
22790147 GTAAAATCGTCAAAATTTTACTAGG-
1 GTAAAATTGTCAAAACTTTACT-GGA
22790172 GATAAAATTGTCAAAACTTTACTGGA
1 G-TAAAATTGTCAAAACTTTACTGGA
22790198 GTAAAATTG
1 GTAAAATTG
22790207 GGATGAGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 11 0.35
26 20 0.65
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.32
Consensus pattern (25 bp):
GTAAAATTGTCAAAACTTTACTGGA
Found at i:22794227 original size:49 final size:50
Alignment explanation
Indices: 22794096--22794228 Score: 162
Period size: 49 Copynumber: 2.7 Consensus size: 50
22794086 ATAACACACC
* **
22794096 AATAATGTGGACAAGCCACCACATAATGCAG-TCGAGCTACCAGAAACAA
1 AATAATGTGGACAAGCCACCAGATAATGCAGATTTAGCTACCAGAAACAA
* * * * *
22794145 AATAATGTGGTCAAACCACCAGATATTGCAGATTTA-CTGCCAGATACAA
1 AATAATGTGGACAAGCCACCAGATAATGCAGATTTAGCTACCAGAAACAA
* *
22794194 AATATTGTGGACAAGCCGCCAGATAATGCAGATTT
1 AATAATGTGGACAAGCCACCAGATAATGCAGATTT
22794229 GTTGTCAAAT
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
49 68 0.97
50 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (50 bp):
AATAATGTGGACAAGCCACCAGATAATGCAGATTTAGCTACCAGAAACAA
Found at i:22794575 original size:26 final size:26
Alignment explanation
Indices: 22794522--22794575 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
22794512 GTCATGAGTA
* *
22794522 ATAGAAATCACAAAATTACATATTTT
1 ATAGAAATCACAAAATCACATATATT
*
22794548 ATAGAAATCACCAAATCACA-ATCATT
1 ATAGAAATCACAAAATCACATAT-ATT
22794574 AT
1 AT
22794576 CACAGATCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.50, C:0.17, G:0.04, T:0.30
Consensus pattern (26 bp):
ATAGAAATCACAAAATCACATATATT
Found at i:22798207 original size:342 final size:342
Alignment explanation
Indices: 22797582--22798270 Score: 1166
Period size: 342 Copynumber: 2.0 Consensus size: 342
22797572 TACAGGCCAT
* * * *
22797582 TGTTAGAATGAAACATTATGCGCTTGTTGTTTTTCTGGGTAGCCAGATGGAATTACGGGGAGTTT
1 TGTTAGAATGAAACATTATGCGCTTGCTGTTTCTCTGGGCAGCCAGATGGAACTACGGGGAGTTT
*
22797647 CACATAATGCTTATTCTTTCACTATCTTGATTAATTGCTTTTGTCATTTAGGTAAAGTTGATTTT
66 CACATAATGCTTATTCTTTCACTATCTTGATTAATTGCTTTTGTCAGTTAGGTAAAGTTGATTTT
*
22797712 GGGTTTTCTGTTTTGGGGAAAATGCTCAAGTTAGGTTTTGAACCTAATGTTGTAACTTTGTCCAC
131 GGGTTTTCTGTTTTAGGGAAAATGCTCAAGTTAGGTTTTGAACCTAATGTTGTAACTTTGTCCAC
* * *
22797777 CTTGATTAATGGACTTTGTAATCAAAGCAGGGTTTCTCAGGCTGTGAATTTGTTTTATGAAATGA
196 CTTGATTAATGGACTTTGTAATCAAAGCAAGGTTTCTCAGGCTGTCAATTTGTTTGATGAAATGA
* * * *
22797842 TCGAAAAAGGGTATCGACCTGATTCATTTGCTTGCAATACAGTACTTAATGGGTTGTGCAAGTCT
261 TCAAAAAAGGGTATCGACCTGATTCAGTTGCTTACAATACAGTACTTAATGGGTTGTGCAAGACT
*
22797907 GGTAACACTGGTCGAGC
326 GGGAACACTGGTCGAGC
*
22797924 TGTTAGAATGAAACATTATGCGCTTGCTGTTTCTCTGGGCAGCCAGATGGAACTATGGGGAGTTT
1 TGTTAGAATGAAACATTATGCGCTTGCTGTTTCTCTGGGCAGCCAGATGGAACTACGGGGAGTTT
*
22797989 CACATGATGCTTATTCTTTCAAC-ATCTTGATTAATTGCTTTTGTCAGTTAGGTAAAGTTGATTT
66 CACATAATGCTTATTCTTTC-ACTATCTTGATTAATTGCTTTTGTCAGTTAGGTAAAGTTGATTT
*
22798053 TGGGTTTTCTGTTTTAGGGAAAATGCTCAAGTTAGGTTTTGAACCTGATGTTGTAACTTTGTCCA
130 TGGGTTTTCTGTTTTAGGGAAAATGCTCAAGTTAGGTTTTGAACCTAATGTTGTAACTTTGTCCA
*
22798118 CTTTGATTAATGGACTTTGTAATCAAAGCAAGGTTTCTCAGGCTG-CAAGTTTGTTTGATGAAAT
195 CCTTGATTAATGGACTTTGTAATCAAAGCAAGGTTTCTCAGGCTGTCAA-TTTGTTTGATGAAAT
* *
22798182 GATCAAAAAAGGGTGTCGACCTGATTCAGTTGCTTACAATACAGTACTTAATGGGTTGTGTAAGA
259 GATCAAAAAAGGGTATCGACCTGATTCAGTTGCTTACAATACAGTACTTAATGGGTTGTGCAAGA
22798247 CTGGGAACACTGGTCGAGC
324 CTGGGAACACTGGTCGAGC
22798266 TGTTA
1 TGTTA
22798271 AGTTTCTAAG
Statistics
Matches: 325, Mismatches: 20, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
341 2 0.01
342 321 0.99
343 2 0.01
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.37
Consensus pattern (342 bp):
TGTTAGAATGAAACATTATGCGCTTGCTGTTTCTCTGGGCAGCCAGATGGAACTACGGGGAGTTT
CACATAATGCTTATTCTTTCACTATCTTGATTAATTGCTTTTGTCAGTTAGGTAAAGTTGATTTT
GGGTTTTCTGTTTTAGGGAAAATGCTCAAGTTAGGTTTTGAACCTAATGTTGTAACTTTGTCCAC
CTTGATTAATGGACTTTGTAATCAAAGCAAGGTTTCTCAGGCTGTCAATTTGTTTGATGAAATGA
TCAAAAAAGGGTATCGACCTGATTCAGTTGCTTACAATACAGTACTTAATGGGTTGTGCAAGACT
GGGAACACTGGTCGAGC
Found at i:22798709 original size:105 final size:104
Alignment explanation
Indices: 22798516--22799054 Score: 404
Period size: 105 Copynumber: 5.1 Consensus size: 104
22798506 CAATGTTTCT
* * * * * * * * *
22798516 CCTGATATTTTCACGTATAACATATTGATTGATGCACATTGCAAGGAGGGGACAATTTCGGAAGC
1 CCTGATGTTGTCACCTATAATATATTGGTTGATGCATATTGCAAGGAGAGGA-TATTTCTGAAGC
* * * ** * ** **
22798581 TGTAAATATCTTTAATGCGATGAGAAAGCAAGGTGTCAAG
65 TGTAGATATCGTTCACACAATGAGAAAGCAAGGCATTGAG
* ** * *
22798621 CCTGATGTTGTCACCTATAATATAGTGGTTGATGCATGGTGCAAGGAGAGGCTAATTTCTGAATC
1 CCTGATGTTGTCACCTATAATATATTGGTTGATGCATATTGCAAGGAGAGGAT-ATTTCTGAAGC
* * *
22798686 TTTGGATATGGTTCACACAATGAGAAAGCAAGGCATTGAG
65 TGTAGATATCGTTCACACAATGAGAAAGCAAGGCATTGAG
* * * * * * **
22798726 CCTGATGTTGTCACGTATAGTACATTAGTTGATGCACATTGCAAGGAGGGGAGGGTTTCTGAAGC
1 CCTGATGTTGTCACCTATAATATATTGGTTGATGCATATTGCAAGGAGAGGA-TATTTCTGAAGC
* * * * * *
22798791 CGAAGATATTGTTGACACGATGAGAAAGGAAGGCATTGAG
65 TGTAGATATCGTTCACACAATGAGAAAGCAAGGCATTGAG
* * * *
22798831 CCTGATGTTGTGACGTATAATATATTGGTTGATGCGTATTGCAAGGAGAGGAGTATTTCTAAAGC
1 CCTGATGTTGTCACCTATAATATATTGGTTGATGCATATTGCAAGGAGAGGA-TATTTCTGAAGC
* * ** *
22798896 TGTAGATACCATTGC-CACAATGAGAAAGCAAGGTGTGGAG
65 TGTAGATATCGTT-CACACAATGAGAAAGCAAGGCATTGAG
* ** * *
22798936 CCTGATGTTGTCACCTATAACATATTTATTGATGCACT-TTGCAAGAATG-GGATGGTTTCTGAA
1 CCTGATGTTGTCACCTATAATATATTGGTTGATGCA-TATTGCAAGGA-GAGGAT-ATTTCTGAA
* * * *
22798999 GCTGAATG-TATTG-TCGACACAATGAGAAAACAATGCATTGAG
63 GCTGTA-GATATCGTTC-ACACAATGAGAAAGCAAGGCATTGAG
* *
22799041 CCTAATTTTGTCAC
1 CCTGATGTTGTCAC
22799055 ATACAGAACT
Statistics
Matches: 336, Mismatches: 89, Indels: 18
0.76 0.20 0.04
Matches are distributed among these distances:
103 1 0.00
104 2 0.01
105 330 0.98
106 3 0.01
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (104 bp):
CCTGATGTTGTCACCTATAATATATTGGTTGATGCATATTGCAAGGAGAGGATATTTCTGAAGCT
GTAGATATCGTTCACACAATGAGAAAGCAAGGCATTGAG
Found at i:22798917 original size:210 final size:210
Alignment explanation
Indices: 22798516--22799054 Score: 541
Period size: 210 Copynumber: 2.6 Consensus size: 210
22798506 CAATGTTTCT
* * * * * ** *
22798516 CCTGATATTTTCACGTATAACATATTGATTGATGCACATTGCAAGGAGGGGACAATTTCGGAAGC
1 CCTGATGTTGTCACCTATAACACATTTATTGATGCACATTGCAAGGAGGGGACGGTTTCTGAAGC
* ** ** **
22798581 TGTAA-ATATCT-TTAATGCGATGAGAAAGCAAGGTGTCAAGCCTGATGTTGTCACCTATAATAT
66 TG-AAGATAT-TGTTGACACGATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCACCTATAATAT
* * * * * ***
22798644 AGTGGTTGATGCATGGTGCAAGGAGAGGCTAATTTCTGAATCTTTGGATATGGTTCACACAATGA
129 AGTGGTTGATGCATAGTGCAAGGAGAGGCTAATTTCTAAAGCTGTAGATACCATTCACACAATGA
*
22798709 GAAAGCAAGGCATTGAG
194 GAAAGCAAGGCATGGAG
* ** *
22798726 CCTGATGTTGTCACGTATAGTACA-TTAGTTGATGCACATTGCAAGGAGGGGAGGGTTTCTGAAG
1 CCTGATGTTGTCACCTATAACACATTTA-TTGATGCACATTGCAAGGAGGGGACGGTTTCTGAAG
* * * *
22798790 CCGAAGATATTGTTGACACGATGAGAAAGGAAGGCATTGAGCCTGATGTTGTGACGTATAATATA
65 CTGAAGATATTGTTGACACGATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCACCTATAATATA
* * * *
22798855 TTGGTTGATGCGTATTGCAAGGAGAGGAGT-ATTTCTAAAGCTGTAGATACCATTGC-CACAATG
130 GTGGTTGATGCATAGTGCAAGGAGAGG-CTAATTTCTAAAGCTGTAGATACCATT-CACACAATG
**
22798918 AGAAAGCAAGGTGTGGAG
193 AGAAAGCAAGGCATGGAG
* * * * *
22798936 CCTGATGTTGTCACCTATAACATATTTATTGATGCACTTTGCAAGAATGGGATGGTTTCTGAAGC
1 CCTGATGTTGTCACCTATAACACATTTATTGATGCACATTGCAAGGAGGGGACGGTTTCTGAAGC
* * * * * *
22799001 TGAATG-TATTGTCGACACAATGAGAAAACAATGCATTGAGCCTAATTTTGTCAC
66 TGAA-GATATTGTTGACACGATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCAC
22799055 ATACAGAACT
Statistics
Matches: 269, Mismatches: 53, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
209 5 0.02
210 258 0.96
211 6 0.02
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (210 bp):
CCTGATGTTGTCACCTATAACACATTTATTGATGCACATTGCAAGGAGGGGACGGTTTCTGAAGC
TGAAGATATTGTTGACACGATGAGAAAGCAAGGCATTGAGCCTGATGTTGTCACCTATAATATAG
TGGTTGATGCATAGTGCAAGGAGAGGCTAATTTCTAAAGCTGTAGATACCATTCACACAATGAGA
AAGCAAGGCATGGAG
Found at i:22799999 original size:22 final size:21
Alignment explanation
Indices: 22799957--22800000 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
22799947 ATCCTCAACA
22799957 CTTCATTGCAAAAGCTCGAAG
1 CTTCATTGCAAAAGCTCGAAG
22799978 CTTCACTTGCTAAAAGCT-GAAG
1 CTTCA-TTGC-AAAAGCTCGAAG
22800000 C
1 C
22800001 AATCGGCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.24
22 9 0.43
23 7 0.33
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (21 bp):
CTTCATTGCAAAAGCTCGAAG
Found at i:22802120 original size:33 final size:32
Alignment explanation
Indices: 22802068--22802236 Score: 142
Period size: 33 Copynumber: 5.2 Consensus size: 32
22802058 GTCCATACAG
* *
22802068 AACCTGCACGACCAAATGCTAATCCATAAGACC
1 AACCTGCAC-AGCAAATGCTAATCCATAAGGCC
22802101 AACCTGCACAGCAACATGCTAATCCAT-AGGCTC
1 AACCTGCACAGCAA-ATGCTAATCCATAAGGC-C
* ** * *
22802134 AAACTGCATGGCCAAATGCTAATCCACACGGCC
1 AACCTGCACAG-CAAATGCTAATCCATAAGGCC
* * * * *
22802167 AAACTGCTCAGCCAATGCTAATGCATATGGCC
1 AACCTGCACAGCAAATGCTAATCCATAAGGCC
* * * *
22802199 AACCTGTACAGCTAAGTGCTAATCCATATGCCC
1 AACCTGCACAGC-AAATGCTAATCCATAAGGCC
22802232 AACCT
1 AACCT
22802237 ACATAGTCAA
Statistics
Matches: 110, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
32 33 0.30
33 71 0.65
34 6 0.05
ACGTcount: A:0.34, C:0.32, G:0.15, T:0.19
Consensus pattern (32 bp):
AACCTGCACAGCAAATGCTAATCCATAAGGCC
Found at i:22806001 original size:17 final size:18
Alignment explanation
Indices: 22805965--22806002 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
22805955 TTATTGCTCG
*
22805965 TGTATTTTATTGCTTATT
1 TGTATTTTATTGATTATT
*
22805983 TGTA-TTTATTGATTCTT
1 TGTATTTTATTGATTATT
22806000 TGT
1 TGT
22806003 CGCTCATTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.16, C:0.05, G:0.13, T:0.66
Consensus pattern (18 bp):
TGTATTTTATTGATTATT
Found at i:22811620 original size:105 final size:105
Alignment explanation
Indices: 22811467--22811786 Score: 442
Period size: 105 Copynumber: 3.0 Consensus size: 105
22811457 ATATTTTCAT
* * * * ** * **
22811467 GTATAATATGTTGATTGATGCACATTGCAAGGAGGGGACAATTTCTGAAGCTGTAGATACCATTG
1 GTATAGTATATTGGTTGATGCACATTGTAAGGAGGGGATGATTTCTGAAGCTGAAGATATTATTG
22811532 ACACAATGAGAAAGCAAGGCATTGAGCCTAATGTTGTTAC
66 ACACAATGAGAAAGCAAGGCATTGAGCCTAATGTTGTTAC
* * * *
22811572 GTATAGTATATTGGTTGATGCACATTGTAAGGAAGGGATGATTCCTGAAGCTAAAGATATTTTTG
1 GTATAGTATATTGGTTGATGCACATTGTAAGGAGGGGATGATTTCTGAAGCTGAAGATATTATTG
* * *
22811637 AGACAATGATAAAGCAAGGCATTGAGCCTAATGTTGTCAC
66 ACACAATGAGAAAGCAAGGCATTGAGCCTAATGTTGTTAC
* * *
22811677 GTATAGTATATTGGTTGATGCACTTTGTAAGGAGGGGATGGTTTCTGAAGCTGAAGATATTGTTG
1 GTATAGTATATTGGTTGATGCACATTGTAAGGAGGGGATGATTTCTGAAGCTGAAGATATTATTG
* *
22811742 ACACAATGAGAAATCAAGGCATTGAGCCTGATGTTGTTAC
66 ACACAATGAGAAAGCAAGGCATTGAGCCTAATGTTGTTAC
*
22811782 CTATA
1 GTATA
22811787 ATGCATTGAT
Statistics
Matches: 187, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
105 187 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (105 bp):
GTATAGTATATTGGTTGATGCACATTGTAAGGAGGGGATGATTTCTGAAGCTGAAGATATTATTG
ACACAATGAGAAAGCAAGGCATTGAGCCTAATGTTGTTAC
Found at i:22820547 original size:19 final size:19
Alignment explanation
Indices: 22820525--22820566 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
22820515 ATCAAAACTC
22820525 GTTTCTCCAAAGTTTTAAA
1 GTTTCTCCAAAGTTTTAAA
* *
22820544 GTTTCTCCAAATTTTTTAA
1 GTTTCTCCAAAGTTTTAAA
22820563 GTTT
1 GTTT
22820567 TAAAATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.26, C:0.14, G:0.10, T:0.50
Consensus pattern (19 bp):
GTTTCTCCAAAGTTTTAAA
Found at i:22821281 original size:13 final size:13
Alignment explanation
Indices: 22821249--22821284 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
22821239 CATTGCTTTT
*
22821249 GAAAAGCGCTGTG
1 GAAAAGTGCTGTG
22821262 GAAAAGTGCTGTG
1 GAAAAGTGCTGTG
22821275 GAAAAGTGCT
1 GAAAAGTGCT
22821285 TTTGAGAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.33, C:0.11, G:0.36, T:0.19
Consensus pattern (13 bp):
GAAAAGTGCTGTG
Found at i:22831314 original size:21 final size:21
Alignment explanation
Indices: 22831281--22831320 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
22831271 GATTCCTAAG
22831281 ATAAACATAAAAGT-AGAGCA
1 ATAAACATAAAAGTGAGAGCA
*
22831301 ATAAATATCAAAAGTGAGAG
1 ATAAACAT-AAAAGTGAGAG
22831321 ATCACTCACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 6 0.35
22 4 0.24
ACGTcount: A:0.57, C:0.07, G:0.17, T:0.17
Consensus pattern (21 bp):
ATAAACATAAAAGTGAGAGCA
Found at i:22833165 original size:49 final size:49
Alignment explanation
Indices: 22833094--22833217 Score: 142
Period size: 49 Copynumber: 2.5 Consensus size: 49
22833084 CCAGTTCATG
* * ** * *
22833094 GTGGTTATACAATCACAAGTTGAAGTATAACT-AGGGCTCCAAGTTGACG
1 GTGGTTATGCGATCACGGGTTGAAGTATAACTCA-GGCCCCAAGTTGACA
* * *
22833143 GTGGTTATGCGGTCACGGGTTGAAGTATAACTCAGGCCCCCAGTTGATA
1 GTGGTTATGCGATCACGGGTTGAAGTATAACTCAGGCCCCAAGTTGACA
*
22833192 GTGGTTATGCGATCACGGGTTCAAGT
1 GTGGTTATGCGATCACGGGTTGAAGT
22833218 TTCATGATAC
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
49 62 0.98
50 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (49 bp):
GTGGTTATGCGATCACGGGTTGAAGTATAACTCAGGCCCCAAGTTGACA
Found at i:22836966 original size:17 final size:17
Alignment explanation
Indices: 22836944--22837038 Score: 65
Period size: 17 Copynumber: 5.6 Consensus size: 17
22836934 TTAGAAGAAA
22836944 AATATTAAATTAAATTT
1 AATATTAAATTAAATTT
22836961 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAA--A-TTT
**
22836981 AATATTAAATT-AATAC
1 AATATTAAATTAAATTT
* *
22836997 AATA--CAATT-AAGTT
1 AATATTAAATTAAATTT
*
22837011 AAGCATTAAATTAAATTT
1 AA-TATTAAATTAAATTT
22837029 AATATTAAAT
1 AATATTAAAT
22837039 ATATTAAAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
14 8 0.14
15 1 0.02
16 5 0.08
17 23 0.39
18 7 0.12
19 3 0.05
20 12 0.20
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (17 bp):
AATATTAAATTAAATTT
Found at i:22836994 original size:20 final size:18
Alignment explanation
Indices: 22836944--22836995 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 18
22836934 TTAGAAGAAA
22836944 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
22836961 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TTT
22836981 AATATTAAATTAATA
1 AATATTAAATTAATA
22836996 CAATACAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 11 0.37
18 1 0.03
19 3 0.10
20 15 0.50
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:22848237 original size:27 final size:27
Alignment explanation
Indices: 22848183--22848251 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
22848173 AAACCTTTAC
* * *
22848183 CCTTAAATCCAAACCCCTAACACTTAAA
1 CCTTAAATCCCAA-CACTAACACCTAAA
*
22848211 CCTTAAATCCCAACACTAACCCCTAAA
1 CCTTAAATCCCAACACTAACACCTAAA
*
22848238 CCTTAAATCTCAAC
1 CCTTAAATCCCAAC
22848252 CCTTAAATCA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 24 0.67
28 12 0.33
ACGTcount: A:0.41, C:0.38, G:0.00, T:0.22
Consensus pattern (27 bp):
CCTTAAATCCCAACACTAACACCTAAA
Found at i:22848272 original size:14 final size:15
Alignment explanation
Indices: 22848255--22848287 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
22848245 TCTCAACCCT
22848255 TAAAT-CATAATCCC
1 TAAATCCATAATCCC
*
22848269 TAAATCCATACTCCC
1 TAAATCCATAATCCC
22848284 TAAA
1 TAAA
22848288 CCTTACACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.27
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:22848735 original size:41 final size:41
Alignment explanation
Indices: 22848672--22848784 Score: 156
Period size: 41 Copynumber: 2.8 Consensus size: 41
22848662 AAATATTTTT
* *
22848672 GCGGCACTTTTCCAAAAACGCCGCTAAAGCC-CAGAGAATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCTC-GAGAATTA
* * *
22848713 GCGGTGCTTTTTCAAAAACGCCGCTAAAACCTCGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCTCGAGAATTA
*
22848754 GCGGCGCTTTTTCAAAAATGCCGCTAAAGCC
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCC
22848785 AAGAAAGGTC
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 62 0.98
42 1 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (41 bp):
GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCTCGAGAATTA
Found at i:22848923 original size:40 final size:40
Alignment explanation
Indices: 22848820--22848955 Score: 159
Period size: 40 Copynumber: 3.4 Consensus size: 40
22848810 TGGGCTTAGG
* * * **
22848820 TTTTTTGCGGCATTTTAAAAAAAAAGCCGCTAATGCTC-A
1 TTTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGA
* **
22848859 TTTTTAGCGGC-TGTTTACTTAAAGCGCCGCTAATGCTCGA
1 TTTTTAGCGGCGTTTTTA-AAAAAGCGCCGCTAATGCTCGA
*
22848899 TCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGA
1 TTTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGA
*
22848939 TTTTTAGCAGCGTTTTT
1 TTTTTAGCGGCGTTTTT
22848956 TGTCCAAACG
Statistics
Matches: 81, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
38 4 0.05
39 26 0.32
40 46 0.57
41 5 0.06
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCGA
Found at i:22850223 original size:29 final size:29
Alignment explanation
Indices: 22850189--22850265 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 29
22850179 TCTTTAAAAT
*
22850189 CAAGAGTCTGGCATTGACTATCCACCAAA
1 CAAGAGTCTGGCAGTGACTATCCACCAAA
* * ***
22850218 CAAGAGTTTGGCAGTAACTATTTGCCAAA
1 CAAGAGTCTGGCAGTGACTATCCACCAAA
*
22850247 CAAGAGTCTAGCAGTGACT
1 CAAGAGTCTGGCAGTGACT
22850266 CTCGTTTAAG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.23
Consensus pattern (29 bp):
CAAGAGTCTGGCAGTGACTATCCACCAAA
Found at i:22860365 original size:29 final size:30
Alignment explanation
Indices: 22860311--22860371 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
22860301 ATAATTTGCA
* *
22860311 AAAATTGAATTAAATTAATATTTCATGTAT
1 AAAATTGAATAAAATTAATAGTTCATGTAT
*
22860341 AAAATTGCATAAAATTAA-AGTTCATGTAT
1 AAAATTGAATAAAATTAATAGTTCATGTAT
22860370 AA
1 AA
22860372 GATCGTACTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 12 0.43
30 16 0.57
ACGTcount: A:0.49, C:0.05, G:0.08, T:0.38
Consensus pattern (30 bp):
AAAATTGAATAAAATTAATAGTTCATGTAT
Found at i:22862331 original size:11 final size:10
Alignment explanation
Indices: 22862306--22862355 Score: 64
Period size: 11 Copynumber: 4.7 Consensus size: 10
22862296 TGCTTTACTG
*
22862306 TTGTTTTCCA
1 TTGTTTTCTA
22862316 TTGTTTTGCTA
1 TTGTTTT-CTA
22862327 TTGTTTTTCTA
1 TTG-TTTTCTA
22862338 TTGTTTTCTCA
1 TTGTTTTCT-A
22862349 TTGTTTT
1 TTGTTTT
22862356 ACTACTATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
10 13 0.36
11 19 0.53
12 4 0.11
ACGTcount: A:0.08, C:0.12, G:0.12, T:0.68
Consensus pattern (10 bp):
TTGTTTTCTA
Found at i:22862372 original size:33 final size:32
Alignment explanation
Indices: 22862306--22862372 Score: 80
Period size: 33 Copynumber: 2.1 Consensus size: 32
22862296 TGCTTTACTG
* * * **
22862306 TTGTTTTCCATTGTTTTGCTATTGTTTTTCTA
1 TTGTTTTCCATTGTTTTACTACTATTTCACTA
22862338 TTGTTTTCTCATTGTTTTACTACTATTTCACTA
1 TTGTTTTC-CATTGTTTTACTACTATTTCACTA
22862371 TT
1 TT
22862373 ATGTTGCTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
32 8 0.28
33 21 0.72
ACGTcount: A:0.13, C:0.15, G:0.09, T:0.63
Consensus pattern (32 bp):
TTGTTTTCCATTGTTTTACTACTATTTCACTA
Found at i:22863845 original size:10 final size:10
Alignment explanation
Indices: 22863807--22863872 Score: 61
Period size: 10 Copynumber: 6.9 Consensus size: 10
22863797 ATAAATTTAT
22863807 TTATATATTA
1 TTATATATTA
*
22863817 GTA-ATATTA
1 TTATATATTA
22863826 TTTATATATTA
1 -TTATATATTA
*
22863837 TTCTATATTA
1 TTATATATTA
22863847 TTAATATATT-
1 TT-ATATATTA
22863857 TTA-AT-TTA
1 TTATATATTA
22863865 -TATATATT
1 TTATATATT
22863873 TAAATTATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
7 4 0.09
8 4 0.09
9 9 0.20
10 17 0.37
11 12 0.26
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (10 bp):
TTATATATTA
Found at i:22863846 original size:30 final size:32
Alignment explanation
Indices: 22863791--22863871 Score: 91
Period size: 30 Copynumber: 2.7 Consensus size: 32
22863781 AACGCATATT
22863791 TTATTTATAAATTTATTTATATATTAGTAATA
1 TTATTTATAAATTTATTTATATATTAGTAATA
* * *
22863823 TTATTTATATA-TTA-TTCTATATTATTAATA
1 TTATTTATAAATTTATTTATATATTAGTAATA
*
22863853 -TATTT-T-AATTTATATATAT
1 TTATTTATAAATTTATTTATAT
22863872 TTAAATTATA
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
27 1 0.02
28 4 0.10
29 9 0.22
30 14 0.34
31 3 0.07
32 10 0.24
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (32 bp):
TTATTTATAAATTTATTTATATATTAGTAATA
Found at i:22863880 original size:15 final size:14
Alignment explanation
Indices: 22863850--22863886 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
22863840 TATATTATTA
*
22863850 ATATATTTTAATTT
1 ATATATTTTAAATT
22863864 ATATATATTTAAATT
1 ATATAT-TTTAAATT
22863879 ATATATTT
1 ATATATTT
22863887 ATATGATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATATATTTTAAATT
Found at i:22864069 original size:21 final size:21
Alignment explanation
Indices: 22864029--22864067 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
22864019 AAATCATAGA
*
22864029 TAAATCCAAGCGACTCTTTCT
1 TAAATCCAAGCAACTCTTTCT
22864050 TAAATCCAAGCAA-TCTTT
1 TAAATCCAAGCAACTCTTT
22864068 TCGTAGGTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.33, C:0.26, G:0.08, T:0.33
Consensus pattern (21 bp):
TAAATCCAAGCAACTCTTTCT
Found at i:22864806 original size:93 final size:93
Alignment explanation
Indices: 22864672--22864848 Score: 318
Period size: 93 Copynumber: 1.9 Consensus size: 93
22864662 TGAGATAGCT
* * *
22864672 ATTTGTGCAAGTATTTTGCGATTCAGAAGCAACTGTTTCTTGTACAGATTGTGTATTAATCTACT
1 ATTTGTGCAAGTATTTTGCGATTCAAAAGCAACTGTGTCTTGTACAGACTGTGTATTAATCTACT
22864737 ATAACTATAGGATACCCCCACTCCGCGA
66 ATAACTATAGGATACCCCCACTCCGCGA
*
22864765 ATTTGTGCAAGTATTTTGTGATTCAAAAGCAACTGTGTCTTGTACAGACTGTGTATTAATCTACT
1 ATTTGTGCAAGTATTTTGCGATTCAAAAGCAACTGTGTCTTGTACAGACTGTGTATTAATCTACT
22864830 ATAACTATAGGATACCCCC
66 ATAACTATAGGATACCCCC
22864849 CACACTGCGA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 80 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (93 bp):
ATTTGTGCAAGTATTTTGCGATTCAAAAGCAACTGTGTCTTGTACAGACTGTGTATTAATCTACT
ATAACTATAGGATACCCCCACTCCGCGA
Found at i:22867275 original size:8 final size:8
Alignment explanation
Indices: 22867262--22867302 Score: 73
Period size: 8 Copynumber: 5.1 Consensus size: 8
22867252 ATGGTAACAA
22867262 TAAATTTT
1 TAAATTTT
22867270 TAAATTTT
1 TAAATTTT
22867278 TAAATTTT
1 TAAATTTT
22867286 TAAATTTT
1 TAAATTTT
*
22867294 AAAATTTT
1 TAAATTTT
22867302 T
1 T
22867303 TTATTTCATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TAAATTTT
Found at i:22872276 original size:22 final size:22
Alignment explanation
Indices: 22872237--22872278 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
22872227 AGGAAAAGTT
*
22872237 GAGAGAAAGTGAGAGTGGAGAA
1 GAGAGAAAGAGAGAGTGGAGAA
* *
22872259 GAGAGAATGAGAGTGTGGAG
1 GAGAGAAAGAGAGAGTGGAG
22872279 GATGAGTTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.48, T:0.12
Consensus pattern (22 bp):
GAGAGAAAGAGAGAGTGGAGAA
Found at i:22874581 original size:16 final size:17
Alignment explanation
Indices: 22874544--22874581 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
22874534 TTCAACCCCT
22874544 ACTTCTATTCTTCTGAA
1 ACTTCTATTCTTCTGAA
22874561 A-TTCTATTCTTCT-AA
1 ACTTCTATTCTTCTGAA
22874576 ACTTCT
1 ACTTCT
22874582 TCAATTTCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 3 0.15
16 16 0.80
17 1 0.05
ACGTcount: A:0.24, C:0.24, G:0.03, T:0.50
Consensus pattern (17 bp):
ACTTCTATTCTTCTGAA
Found at i:22877974 original size:46 final size:45
Alignment explanation
Indices: 22877924--22878193 Score: 297
Period size: 46 Copynumber: 5.9 Consensus size: 45
22877914 ATACCACTTG
* * * *
22877924 GTCACCCGTTAGGTTTGAACCTATGCGAATCAGATAATAGCGTCCA
1 GTCACCCATTAGGGTTGAACCTACGTGAATCAGATAATAGCG-CCA
* * * * *
22877970 GTCACCCGTTAGGGTTGAACCTATGTGAATTAGATAATAGTGTCTA
1 GTCACCCATTAGGGTTGAACCTACGTGAATCAGATAATAGCG-CCA
* * *
22878016 GTCACCCATTAGGGTTTAACCTACGTGAATCAAATAATAGTGCCTA
1 GTCACCCATTAGGGTTGAACCTACGTGAATCAGATAATAGCGCC-A
* **
22878062 GTCACCCATTAGGGTTGAACCTACGTGAATTAGATAATAGCGACTG
1 GTCACCCATTAGGGTTGAACCTACGTGAATCAGATAATAGCG-CCA
* * * * * *
22878108 GCCATCCATTATGGTTTAACATACGGGAATCAGATAATAGCGCCTA
1 GTCACCCATTAGGGTTGAACCTACGTGAATCAGATAATAGCGCC-A
*
22878154 GTCACCCATTAGGGTTGAACCTACGTGAATCACATAATAG
1 GTCACCCATTAGGGTTGAACCTACGTGAATCAGATAATAG
22878194 TGGTTGTTAA
Statistics
Matches: 188, Mismatches: 33, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
45 2 0.01
46 185 0.98
47 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (45 bp):
GTCACCCATTAGGGTTGAACCTACGTGAATCAGATAATAGCGCCA
Found at i:22878066 original size:92 final size:91
Alignment explanation
Indices: 22877924--22878195 Score: 357
Period size: 92 Copynumber: 3.0 Consensus size: 91
22877914 ATACCACTTG
* * *
22877924 GTCACCCGTTAGGTTTGAACCTATGCGAATCAGATAATAGCGTCC-AGTCACCCGTTAGGGTTGA
1 GTCACCCATTAGGTTT-AACCTACGCGAATCAGATAATAGCG-CCTAGTCACCCATTAGGGTTGA
* *
22877988 ACCTATGTGAATTAGATAATAGTGTCTA
64 ACCTACGTGAATTAGATAATAGTGACTA
* * *
22878016 GTCACCCATTAGGGTTTAACCTACGTGAATCAAATAATAGTGCCTAGTCACCCATTAGGGTTGAA
1 GTCACCCATTA-GGTTTAACCTACGCGAATCAGATAATAGCGCCTAGTCACCCATTAGGGTTGAA
* *
22878081 CCTACGTGAATTAGATAATAGCGACTG
65 CCTACGTGAATTAGATAATAGTGACTA
* * * *
22878108 GCCATCCATTATGGTTTAACATACGGGAATCAGATAATAGCGCCTAGTCACCCATTAGGGTTGAA
1 GTCACCCATTA-GGTTTAACCTACGCGAATCAGATAATAGCGCCTAGTCACCCATTAGGGTTGAA
* *
22878173 CCTACGTGAATCACATAATAGTG
65 CCTACGTGAATTAGATAATAGTG
22878196 GTTGTTAACC
Statistics
Matches: 158, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
91 2 0.01
92 151 0.96
93 5 0.03
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (91 bp):
GTCACCCATTAGGTTTAACCTACGCGAATCAGATAATAGCGCCTAGTCACCCATTAGGGTTGAAC
CTACGTGAATTAGATAATAGTGACTA
Found at i:22878155 original size:138 final size:138
Alignment explanation
Indices: 22877924--22878195 Score: 355
Period size: 138 Copynumber: 2.0 Consensus size: 138
22877914 ATACCACTTG
* * * * * *
22877924 GTCACCCGTTAGGTTTGAACCTATGCGAATCAGATAATAGCGTCCAGTCACCCGTTAGGGTTGAA
1 GTCACCCATTAGGGTTGAACCTACGCGAATCAGATAATAGCGACCAGCCACCCATTAGGGTTGAA
* * * * * * *
22877989 CCTATGTGAATTAGATAATAGTGTCTAGTCACCCATTAGGGTTTAACCTACGTGAATCAAATAAT
66 CATACGGGAATCAGATAATAGCGCCTAGTCACCCATTAGGGTTGAACCTACGTGAATCAAATAAT
22878054 AGTGCCTA
131 AGTGCCTA
* * ** * * *
22878062 GTCACCCATTAGGGTTGAACCTACGTGAATTAGATAATAGCGACTGGCCATCCATTATGGTTTAA
1 GTCACCCATTAGGGTTGAACCTACGCGAATCAGATAATAGCGACCAGCCACCCATTAGGGTTGAA
*
22878127 CATACGGGAATCAGATAATAGCGCCTAGTCACCCATTAGGGTTGAACCTACGTGAATCACATAAT
66 CATACGGGAATCAGATAATAGCGCCTAGTCACCCATTAGGGTTGAACCTACGTGAATCAAATAAT
22878192 AGTG
131 AGTG
22878196 GTTGTTAACC
Statistics
Matches: 113, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
138 113 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (138 bp):
GTCACCCATTAGGGTTGAACCTACGCGAATCAGATAATAGCGACCAGCCACCCATTAGGGTTGAA
CATACGGGAATCAGATAATAGCGCCTAGTCACCCATTAGGGTTGAACCTACGTGAATCAAATAAT
AGTGCCTA
Found at i:22885144 original size:12 final size:12
Alignment explanation
Indices: 22885127--22885152 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22885117 AAGGGGTACA
22885127 AGAGGCCGTGGT
1 AGAGGCCGTGGT
22885139 AGAGGCCGTGGT
1 AGAGGCCGTGGT
22885151 AG
1 AG
22885153 TACTAGGGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.15, G:0.50, T:0.15
Consensus pattern (12 bp):
AGAGGCCGTGGT
Found at i:22891163 original size:9 final size:9
Alignment explanation
Indices: 22891149--22891179 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
22891139 GTTAAACGAA
22891149 TCGAGTTAT
1 TCGAGTTAT
*
22891158 TCGAGTTAA
1 TCGAGTTAT
22891167 TCGAGTTAT
1 TCGAGTTAT
22891176 TCGA
1 TCGA
22891180 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:22891249 original size:9 final size:9
Alignment explanation
Indices: 22891232--22891268 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
22891222 TGAGTTTTCG
22891232 AATTCGAAT
1 AATTCGAAT
*
22891241 AACTCGAAT
1 AATTCGAAT
22891250 AATTCGAAT
1 AATTCGAAT
22891259 AATTCGAAT
1 AATTCGAAT
22891268 A
1 A
22891269 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:22891508 original size:30 final size:30
Alignment explanation
Indices: 22891474--22891531 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
22891464 AAACCTTTTA
*
22891474 TTTTCCCCCAAAATTTTTACTCCCTTCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCAC
* * *
22891504 TTTTCCCCTAAAACTTTTATTTCCTTCC
1 TTTTCCCCCAAAACTTTTACTCCCTTCC
22891532 CATCCCACCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.19, C:0.36, G:0.00, T:0.45
Consensus pattern (30 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCAC
Found at i:22898428 original size:2 final size:2
Alignment explanation
Indices: 22898421--22898450 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
22898411 CTTTTAGCTT
22898421 TA TA TA TA TA TA TA TA TA TA TA TA TCA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T
22898451 CTTTCCATCC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22898917 original size:50 final size:50
Alignment explanation
Indices: 22898858--22898958 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
22898848 GATAAACTTA
22898858 TAGTAAACAGTGTTGAGAAGGAATAATTATGGGAAATTAGGAATATTATT
1 TAGTAAACAGTGTTGAGAAGGAATAATTATGGGAAATTAGGAATATTATT
22898908 TAGTAAACAGTGTTGAGAAGGAATAATTATGGGAAATTAGGAATATTATT
1 TAGTAAACAGTGTTGAGAAGGAATAATTATGGGAAATTAGGAATATTATT
22898958 T
1 T
22898959 GGTACAGTGT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.42, C:0.02, G:0.24, T:0.33
Consensus pattern (50 bp):
TAGTAAACAGTGTTGAGAAGGAATAATTATGGGAAATTAGGAATATTATT
Found at i:22900659 original size:9 final size:9
Alignment explanation
Indices: 22900625--22900675 Score: 50
Period size: 9 Copynumber: 5.3 Consensus size: 9
22900615 CCACATTAGG
22900625 TTTT-GGGT
1 TTTTAGGGT
22900633 TTTTAGGGTT
1 TTTTAGGG-T
22900643 ATGGTTTAGGGT
1 -T--TTTAGGGT
*
22900655 TTTTAGGAT
1 TTTTAGGGT
22900664 TTTTAGGGT
1 TTTTAGGGT
22900673 TTT
1 TTT
22900676 GGAGAAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
8 4 0.11
9 21 0.58
10 1 0.03
11 2 0.06
12 1 0.03
13 7 0.19
ACGTcount: A:0.12, C:0.00, G:0.31, T:0.57
Consensus pattern (9 bp):
TTTTAGGGT
Found at i:22901096 original size:125 final size:125
Alignment explanation
Indices: 22900793--22901235 Score: 769
Period size: 125 Copynumber: 3.5 Consensus size: 125
22900783 GATAAAATCA
* * * *
22900793 AAGCAGGATGCTTTATCAGAAGAATTTCTAAAATCGCGCCCACGTGGACGCGATTGTGCTACAGT
1 AAGCAGGATGCTTTATCAAAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * *
22900858 AGGTCCTGAAAAATTAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAGAACGCTTC
66 AGGTCTTGAAAAAATAATTTCGAGTTGACGTTTTTGAGCAAATAGTATAAAA-AACGCTTC
* *
22900919 AGGCAGGATGCTTTATCAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAAAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
22900984 AGGTCTTGAAAAAATAATTTCGAGTTGACGTTTTTGAGCAAATAGTATAAAAAACGCTTC
66 AGGTCTTGAAAAAATAATTTCGAGTTGACGTTTTTGAGCAAATAGTATAAAAAACGCTTC
*
22901044 AAGCATGATGCTTTATCAAAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAAAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
22901109 AGGTCTTGAAAAAATAATTTCGAGTTGACGTTTTTGAGCAAATAGTATAAAAAACGCTTC
66 AGGTCTTGAAAAAATAATTTCGAGTTGACGTTTTTGAGCAAATAGTATAAAAAACGCTTC
*
22901169 AAGCATGATGCTTTATCAAAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAAAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
22901234 AG
66 AG
22901236 CATGTTTGGG
Statistics
Matches: 306, Mismatches: 11, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
125 197 0.64
126 109 0.36
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (125 bp):
AAGCAGGATGCTTTATCAAAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCTTGAAAAAATAATTTCGAGTTGACGTTTTTGAGCAAATAGTATAAAAAACGCTTC
Found at i:22902087 original size:19 final size:19
Alignment explanation
Indices: 22902063--22902113 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 19
22902053 ATCTAACATT
22902063 TTGTTAGTAAAATTATTAA
1 TTGTTAGTAAAATTATTAA
**
22902082 TTG-T--TAATTTTATTAA
1 TTGTTAGTAAAATTATTAA
22902098 TTGTTAGTAAAATTAT
1 TTGTTAGTAAAATTAT
22902114 CAAATTATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
16 13 0.52
17 1 0.04
18 1 0.04
19 10 0.40
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (19 bp):
TTGTTAGTAAAATTATTAA
Found at i:22902284 original size:23 final size:24
Alignment explanation
Indices: 22902224--22902289 Score: 64
Period size: 23 Copynumber: 2.8 Consensus size: 24
22902214 AGAGTTAGGT
* *
22902224 TTAGGTTTAGGGTTTTTGTTAAGA
1 TTAGGGTTAGGGTGTTTGTTAAGA
**
22902248 TTAGGGTTTTGGTGTTT-TTAAG-
1 TTAGGGTTAGGGTGTTTGTTAAGA
*
22902270 TTAAGGGTTAGGGTGATTGT
1 TT-AGGGTTAGGGTGTTTGT
22902290 GTCGGTGCTC
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
22 2 0.06
23 17 0.52
24 14 0.42
ACGTcount: A:0.18, C:0.00, G:0.33, T:0.48
Consensus pattern (24 bp):
TTAGGGTTAGGGTGTTTGTTAAGA
Found at i:22902878 original size:7 final size:7
Alignment explanation
Indices: 22902868--22902900 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
22902858 TTATATACAT
22902868 AATACTA
1 AATACTA
22902875 AATACTA
1 AATACTA
22902882 AATACTA
1 AATACTA
22902889 AATACTA
1 AATACTA
22902896 AATAC
1 AATAC
22902901 CAATCGACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:22903275 original size:68 final size:66
Alignment explanation
Indices: 22903197--22903338 Score: 239
Period size: 68 Copynumber: 2.1 Consensus size: 66
22903187 TCAAGTTTGT
*
22903197 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATAAAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATAAAATT-A-ACAATTAATAATTTGAT
22903262 AAA
64 AAA
*
22903265 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAA
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATAAAATTAACAATTAATAATTTGATAA
*
22903330 T
66 A
22903331 TTTACTAA
1 TTTACTAA
22903339 CAATTAATTT
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
66 27 0.38
67 1 0.01
68 43 0.61
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (66 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATAAAATTAACAATTAATAATTTGATAA
A
Found at i:22903348 original size:16 final size:16
Alignment explanation
Indices: 22903327--22903368 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
22903317 AATAATTTGA
*
22903327 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
22903343 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
22903359 TAGTTTTAAT
1 TAATTTTAAT
22903369 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:22903352 original size:22 final size:23
Alignment explanation
Indices: 22903342--22903397 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
22903332 TTACTAACAA
* * *
22903342 TTAATTTTAAT-AACAATTAGTT
1 TTAATTTTAATAAAAAAATAATT
*
22903364 TTAATTTTATTAAAAAAATAATT
1 TTAATTTTAATAAAAAAATAATT
22903387 TTAATTTTAAT
1 TTAATTTTAAT
22903398 TTTAATTTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
TTAATTTTAATAAAAAAATAATT
Found at i:22903357 original size:59 final size:66
Alignment explanation
Indices: 22903197--22903360 Score: 207
Period size: 68 Copynumber: 2.5 Consensus size: 66
22903187 TCAAGTTTGT
*
22903197 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATAAAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAA-GTTAGATTTT-ATACAACAATTAATAAAATTAATACAATTAATAATTTGAT
22903262 AAA
64 AAA
*
22903265 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
1 TTTACTAATCAAA-GTTAGATTTTA-TACAACAATTAATAAAATTAATACAATTAATAATTTGAT
*
22903328 AAT
64 AAA
*
22903331 TTTACTAA-C-AA-TTA-ATTTTA-ATAACAATTA
1 TTTACTAATCAAAGTTAGATTTTATACAACAATTA
22903361 GTTTTAATTT
Statistics
Matches: 91, Mismatches: 4, Indels: 11
0.86 0.04 0.10
Matches are distributed among these distances:
59 9 0.10
61 6 0.07
62 3 0.03
64 2 0.02
65 1 0.01
66 27 0.30
67 1 0.01
68 42 0.46
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (66 bp):
TTTACTAATCAAAGTTAGATTTTATACAACAATTAATAAAATTAATACAATTAATAATTTGATAA
A
Found at i:22903391 original size:6 final size:6
Alignment explanation
Indices: 22903382--22903410 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
22903372 ATTAAAAAAA
22903382 TAATTT TAATTT TAATTT TAATTT TAATT
1 TAATTT TAATTT TAATTT TAATTT TAATT
22903411 AAAAGTGGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
TAATTT
Found at i:22904963 original size:40 final size:40
Alignment explanation
Indices: 22904914--22904992 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
22904904 TAGGGGCGCG
* * *
22904914 CTACGTGGCAGCAAAACGCGTCC-CTTAAGGCGCGCTTTGC
1 CTACATGGCAACAAAACGCGTCCACATAA-GCGCGCTTTGC
*
22904954 CTACATGGCAACAAAGCGCGTCCACATAAGCGCGCTTTG
1 CTACATGGCAACAAAACGCGTCCACATAAGCGCGCTTTG
22904993 TTGCCACGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 30 0.88
41 4 0.12
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.19
Consensus pattern (40 bp):
CTACATGGCAACAAAACGCGTCCACATAAGCGCGCTTTGC
Found at i:22907320 original size:21 final size:21
Alignment explanation
Indices: 22907282--22907321 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
22907272 TTGTCTAGCT
* * *
22907282 TTCAGCGGGGGTTGTGGTTGC
1 TTCAGCAGGGATTCTGGTTGC
22907303 TTCAGCAGGGATTCTGGTT
1 TTCAGCAGGGATTCTGGTT
22907322 CCTCTAGTAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.10, C:0.15, G:0.40, T:0.35
Consensus pattern (21 bp):
TTCAGCAGGGATTCTGGTTGC
Found at i:22907626 original size:18 final size:18
Alignment explanation
Indices: 22907584--22907626 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
22907574 GACTTGAAAA
* * *
22907584 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
*
22907602 AGAATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
22907620 AGGATAC
1 AGGATAC
22907627 GCACCTGGCA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.09, G:0.26, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:22909158 original size:23 final size:23
Alignment explanation
Indices: 22909132--22909230 Score: 171
Period size: 23 Copynumber: 4.3 Consensus size: 23
22909122 AGTGTTATTG
22909132 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
22909155 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
22909178 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
22909201 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
22909224 ATTAGTG
1 ATCAGTG
22909231 TGCCACTTAT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 73 1.00
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.33
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:22912380 original size:11 final size:11
Alignment explanation
Indices: 22912364--22912416 Score: 72
Period size: 11 Copynumber: 4.9 Consensus size: 11
22912354 AAATACGGAT
22912364 TTGAGAGAAAA
1 TTGAGAGAAAA
*
22912375 TTGAGAGCAAA
1 TTGAGAGAAAA
*
22912386 TTGAGAGGAAA
1 TTGAGAGAAAA
*
22912397 TTGAGAGGAAA
1 TTGAGAGAAAA
22912408 TT-AGAGAAA
1 TTGAGAGAAA
22912417 TGATTTATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
10 6 0.15
11 33 0.85
ACGTcount: A:0.49, C:0.02, G:0.30, T:0.19
Consensus pattern (11 bp):
TTGAGAGAAAA
Found at i:22912392 original size:22 final size:22
Alignment explanation
Indices: 22912364--22912416 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
22912354 AAATACGGAT
22912364 TTGAGAGAAAATTGAGAGCAAA
1 TTGAGAGAAAATTGAGAGCAAA
* *
22912386 TTGAGAGGAAATTGAGAGGAAA
1 TTGAGAGAAAATTGAGAGCAAA
22912408 TT-AGAGAAA
1 TTGAGAGAAA
22912417 TGATTTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 6 0.21
22 22 0.79
ACGTcount: A:0.49, C:0.02, G:0.30, T:0.19
Consensus pattern (22 bp):
TTGAGAGAAAATTGAGAGCAAA
Found at i:22913064 original size:13 final size:14
Alignment explanation
Indices: 22913041--22913069 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
22913031 TGATTAGCGA
22913041 AATTAAATTTAATT
1 AATTAAATTTAATT
22913055 AATT-AATTTAATT
1 AATTAAATTTAATT
22913068 AA
1 AA
22913070 ATTATTCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AATTAAATTTAATT
Found at i:22919879 original size:28 final size:26
Alignment explanation
Indices: 22919848--22919925 Score: 68
Period size: 28 Copynumber: 2.8 Consensus size: 26
22919838 TAAAAGCTAT
* *
22919848 AAATATTATTAAATTTTAATAAAAATTC
1 AAATATTA-AAAATTATAA-AAAAATTC
22919876 AAATATTAAAAATTATAAAAAAATAT-
1 AAATATTAAAAATTATAAAAAAAT-TC
* *
22919902 AAAAATTGTAAAAAATATAAAAAA
1 AAATA-T-TAAAAATTATAAAAAA
22919926 TTGTAAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
26 10 0.23
27 10 0.23
28 23 0.53
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (26 bp):
AAATATTAAAAATTATAAAAAAATTC
Found at i:22919902 original size:10 final size:9
Alignment explanation
Indices: 22919876--22919926 Score: 57
Period size: 9 Copynumber: 5.4 Consensus size: 9
22919866 ATAAAAATTC
22919876 AAATATTAAA
1 AAATA-TAAA
*
22919886 AATTATAAAA
1 AAATAT-AAA
22919896 AAATATAAA
1 AAATATAAA
* *
22919905 AATTGTAAA
1 AAATATAAA
22919914 AAATATAAA
1 AAATATAAA
22919923 AAAT
1 AAAT
22919927 TGTAAAATTT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
9 22 0.65
10 12 0.35
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (9 bp):
AAATATAAA
Found at i:22919925 original size:19 final size:19
Alignment explanation
Indices: 22919876--22919973 Score: 85
Period size: 19 Copynumber: 5.2 Consensus size: 19
22919866 ATAAAAATTC
* *
22919876 AAATATTAAAAATTATAAA
1 AAATATAAAAAATTGTAAA
22919895 AAA-ATATAAAAATTGTAAA
1 AAATATA-AAAAATTGTAAA
22919914 AAATATAAAAAATTGT-AA
1 AAATATAAAAAATTGTAAA
* * * *
22919932 AATTTTATAAAGTTGTGAGAA
1 AAATATAAAAAATTGT-A-AA
*
22919953 AAATATACAAAA-TGTAAA
1 AAATATAAAAAATTGTAAA
22919971 AAA
1 AAA
22919974 AATATAATTT
Statistics
Matches: 64, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
18 21 0.33
19 27 0.42
20 6 0.09
21 10 0.16
ACGTcount: A:0.63, C:0.01, G:0.07, T:0.29
Consensus pattern (19 bp):
AAATATAAAAAATTGTAAA
Found at i:22919932 original size:10 final size:10
Alignment explanation
Indices: 22919883--22919933 Score: 61
Period size: 10 Copynumber: 5.3 Consensus size: 10
22919873 TTCAAATATT
22919883 AAAAATTATA
1 AAAAATTATA
*
22919893 AAAAAATAT-
1 AAAAATTATA
*
22919902 AAAAATTGTA
1 AAAAATTATA
22919912 AAAAA-TATA
1 AAAAATTATA
*
22919921 AAAAATTGTA
1 AAAAATTATA
22919931 AAA
1 AAA
22919934 TTTTATAAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
9 15 0.44
10 19 0.56
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (10 bp):
AAAAATTATA
Found at i:22920054 original size:11 final size:11
Alignment explanation
Indices: 22920038--22920081 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
22920028 AAAGAAACAA
22920038 TTTATAATTTT
1 TTTATAATTTT
*
22920049 TTTATAACTTT
1 TTTATAATTTT
*
22920060 TAT-TAATTTT
1 TTTATAATTTT
*
22920070 TTTATCATTTT
1 TTTATAATTTT
22920081 T
1 T
22920082 CACCATATGT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
10 8 0.30
11 19 0.70
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTATAATTTT
Found at i:22920398 original size:87 final size:87
Alignment explanation
Indices: 22920301--22920496 Score: 225
Period size: 87 Copynumber: 2.2 Consensus size: 87
22920291 TTTAATAAGT
* * ** *
22920301 AGGGGCTTAATTATTTTTTTTGAAA-CATTTTAAGGGTTTTTTTAATGCATTTTGAAAGTTCAAG
1 AGGGGCTTAATTATTTTTTTT-AAAGAAGTTTAAGGGCCTTGTTAATGCATTTTGAAAGTTCAAG
* *
22920365 TACTCGATTGAGT-GAAAAAAGG
65 TACTCAATTGAGTAAAAAAAAGG
* ** * *
22920387 CATGGGCTTAATTGCTTTTTTTAAAGAAGTTTGAGGGCCTTGTTAATGTATTTTGAAAGTTCAAG
1 -AGGGGCTTAATTATTTTTTTTAAAGAAGTTTAAGGGCCTTGTTAATGCATTTTGAAAGTTCAAG
*
22920452 TGCTCAATTGAGTAAAAAAAAGG
65 TACTCAATTGAGTAAAAAAAAGG
22920475 AGGGGCTTAATTGCATTTTTTT
1 AGGGGCTTAATT--ATTTTTTT
22920497 CAAAAAATTT
Statistics
Matches: 89, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
86 3 0.03
87 72 0.81
88 8 0.09
89 6 0.07
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (87 bp):
AGGGGCTTAATTATTTTTTTTAAAGAAGTTTAAGGGCCTTGTTAATGCATTTTGAAAGTTCAAGT
ACTCAATTGAGTAAAAAAAAGG
Found at i:22932183 original size:14 final size:13
Alignment explanation
Indices: 22932161--22932194 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
22932151 AAAGTATTTT
*
22932161 AAAATTAAAAATTA
1 AAAAATAAAAA-TA
22932175 AAAAATAAAAATA
1 AAAAATAAAAATA
22932188 AAAAATA
1 AAAAATA
22932195 TATATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
AAAAATAAAAATA
Found at i:22937912 original size:24 final size:24
Alignment explanation
Indices: 22937867--22937913 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
22937857 TATATATACC
22937867 AATTCAATCAATATAAATTCAATA
1 AATTCAATCAATATAAATTCAATA
22937891 AATTC-ATCACATACTAAA-TCAAT
1 AATTCAATCA-ATA-TAAATTCAAT
22937914 CCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (24 bp):
AATTCAATCAATATAAATTCAATA
Found at i:22938156 original size:26 final size:26
Alignment explanation
Indices: 22938124--22938175 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
22938114 TCCCTGTTTG
22938124 GTTTCTATCTTTCCTTCTTTTTATTT
1 GTTTCTATCTTTCCTTCTTTTTATTT
22938150 GTTTCTATCTTTCCTTCTTTTTATTT
1 GTTTCTATCTTTCCTTCTTTTTATTT
22938176 ATTCTTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.08, C:0.19, G:0.04, T:0.69
Consensus pattern (26 bp):
GTTTCTATCTTTCCTTCTTTTTATTT
Found at i:22938204 original size:5 final size:5
Alignment explanation
Indices: 22938196--22938270 Score: 150
Period size: 5 Copynumber: 15.0 Consensus size: 5
22938186 TATTTTGTTT
22938196 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
22938246 TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA
22938271 ATTAAGTAAA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 70 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:22941502 original size:4 final size:4
Alignment explanation
Indices: 22941493--22941523 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
22941483 GAGTACTCTT
22941493 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
22941524 CTTTGTCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.52
Consensus pattern (4 bp):
TGTA
Found at i:22944589 original size:3 final size:3
Alignment explanation
Indices: 22944581--22944613 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
22944571 ATGTTAACAA
22944581 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
22944614 GCAGTCCGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:22945930 original size:3 final size:3
Alignment explanation
Indices: 22945922--22945954 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
22945912 AAACTAGACA
22945922 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
22945955 TTTAGGTATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:22947214 original size:17 final size:18
Alignment explanation
Indices: 22947194--22947233 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
22947184 GTGGCAAAAG
*
22947194 GAAAATCT-TTGGAATCT
1 GAAAATCTCTTGGAAGCT
*
22947211 GAAAATGTCTTGGAAGCT
1 GAAAATCTCTTGGAAGCT
22947229 GAAAA
1 GAAAA
22947234 GAAACGACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (18 bp):
GAAAATCTCTTGGAAGCT
Found at i:22949342 original size:32 final size:33
Alignment explanation
Indices: 22949306--22949371 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
22949296 ATTAGCCATT
*
22949306 TGCTGTTACATGCAT-TTTGCAATGTTTTCCTG
1 TGCTGTTACATGCATGTTTACAATGTTTTCCTG
* * *
22949338 TGCTGTTACTTGCATGTTTATAATGTTTTGCTG
1 TGCTGTTACATGCATGTTTACAATGTTTTCCTG
22949371 T
1 T
22949372 TGGCTTTTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.15, C:0.15, G:0.20, T:0.50
Consensus pattern (33 bp):
TGCTGTTACATGCATGTTTACAATGTTTTCCTG
Found at i:22949385 original size:35 final size:34
Alignment explanation
Indices: 22949305--22949407 Score: 113
Period size: 35 Copynumber: 3.1 Consensus size: 34
22949295 TATTAGCCAT
* * *
22949305 TTGCTGTTACATGCAT-TTTGCAATGTTTTCCTG
1 TTGCTGTTACTTGCATATTTGAAATGTTTTGCTG
*
22949338 -TGCTGTTACTTGCATGTTT-ATAATGTTTTGCTG
1 TTGCTGTTACTTGCATATTTGA-AATGTTTTGCTG
* *
22949371 TTGGCTTTTACTTGCATATTTGAAATGCTTTGCTG
1 TT-GCTGTTACTTGCATATTTGAAATGTTTTGCTG
22949406 TT
1 TT
22949408 TATTTGGATT
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
32 14 0.24
33 14 0.24
34 1 0.02
35 29 0.49
36 1 0.02
ACGTcount: A:0.16, C:0.15, G:0.19, T:0.50
Consensus pattern (34 bp):
TTGCTGTTACTTGCATATTTGAAATGTTTTGCTG
Found at i:22953572 original size:108 final size:106
Alignment explanation
Indices: 22953385--22953584 Score: 283
Period size: 108 Copynumber: 1.9 Consensus size: 106
22953375 TGGATTAAGA
* * * * *
22953385 TTTAAGAGGATATTTGACTATTTGGTCAAATGAGAAATCGAAACCCATCACATTAGGGAACATTT
1 TTTAAAAGGATATTTGACTATTTGATCAAAAGAAAAATCGAAACCCAGCACATTAGGGAACATTT
* *
22953450 CCTCGAATTTCCAAACGCAAAATATTGTCTTACTTCGAAAT
66 CCTCGAATCTCCAAACGCAAAACATTGTCTTACTTCGAAAT
* * *
22953491 TTTAAAAGGATATTTGACTATTTGATCGAACAAGAAAAATCGAAACCTAGCACATTAGGGCACGT
1 TTTAAAAGGATATTTGACTATTTGATC-AA-AAGAAAAATCGAAACCCAGCACATTAGGGAACAT
*
22953556 TTTCTCGAATCTCCAAACGCAAAACATTG
64 TTCCTCGAATCTCCAAACGCAAAACATTG
22953585 CCTGATAGAG
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
106 25 0.31
107 2 0.02
108 54 0.67
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.29
Consensus pattern (106 bp):
TTTAAAAGGATATTTGACTATTTGATCAAAAGAAAAATCGAAACCCAGCACATTAGGGAACATTT
CCTCGAATCTCCAAACGCAAAACATTGTCTTACTTCGAAAT
Found at i:22954272 original size:31 final size:31
Alignment explanation
Indices: 22954234--22954296 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
22954224 CCTTTTGGAC
*
22954234 TGAATTTTTACATAGAAAGTTATTCATAAAG
1 TGAATTTTTACATAGAAAATTATTCATAAAG
22954265 TGAATTTTTACATAGAAAATTATTCATAAAG
1 TGAATTTTTACATAGAAAATTATTCATAAAG
22954296 T
1 T
22954297 CAAAAAATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (31 bp):
TGAATTTTTACATAGAAAATTATTCATAAAG
Found at i:22955578 original size:108 final size:106
Alignment explanation
Indices: 22955391--22955590 Score: 310
Period size: 108 Copynumber: 1.9 Consensus size: 106
22955381 TGGATTAAGA
* * *
22955391 TTTAAGAGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACATTAGGGCACATTT
1 TTTAAAAGGATATTTGGCTATTTGATCAAACGAAAAATCGAAACCCAGCACATTAGGGCACATTT
* *
22955456 CCTCGAATTTCCAAACGCAAAATATTGTCTTACTTCAAAAT
66 CCTCGAATCTCCAAACGCAAAACATTGTCTTACTTCAAAAT
* *
22955497 TTTAAAAGGATATTTGGCTATTTGATCGAACCAGAAAAATCGAAACCCAGCACATTAGGGCACGT
1 TTTAAAAGGATATTTGGCTATTTGATC-AAAC-GAAAAATCGAAACCCAGCACATTAGGGCACAT
*
22955562 TTTCTCGAATCTCCAAACGCAAAACATTG
64 TTCCTCGAATCTCCAAACGCAAAACATTG
22955591 CCTTTATTAT
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
106 25 0.30
107 3 0.04
108 56 0.67
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (106 bp):
TTTAAAAGGATATTTGGCTATTTGATCAAACGAAAAATCGAAACCCAGCACATTAGGGCACATTT
CCTCGAATCTCCAAACGCAAAACATTGTCTTACTTCAAAAT
Found at i:22958636 original size:87 final size:87
Alignment explanation
Indices: 22958522--22958740 Score: 303
Period size: 87 Copynumber: 2.5 Consensus size: 87
22958512 ATATGTTATC
* * *
22958522 TTTAACCAGCTCCACTGCAACCGATGGAGGCAAGATTTTATTTTCGAGCTGCTTCGCTGTTAACG
1 TTTAACCAGCTCCACTGCAACCGATGGAGGCAAGACTTTATTTTCAAGCTGCTTCGCTATTAACG
22958587 CAGGAAGGCAAGATCTGCTATA
66 CAGGAAGGCAAGATCTGCTATA
* * * * * * *
22958609 TTTAACCAGCCCCACTACAACTGATGGAGGCAAGGCTTTGTTTTCAATCTGCTTTGCTATTAACG
1 TTTAACCAGCTCCACTGCAACCGATGGAGGCAAGACTTTATTTTCAAGCTGCTTCGCTATTAACG
* *
22958674 TAGGAAGGCAAGATCTGCTATC
66 CAGGAAGGCAAGATCTGCTATA
* * *
22958696 TTTAACCAACTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTC
1 TTTAACCAGCTCCACTGCAACCGATGGAGGCAAGACTTTATTTTC
22958741 GATCTTCACT
Statistics
Matches: 116, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
87 116 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (87 bp):
TTTAACCAGCTCCACTGCAACCGATGGAGGCAAGACTTTATTTTCAAGCTGCTTCGCTATTAACG
CAGGAAGGCAAGATCTGCTATA
Found at i:22958647 original size:153 final size:153
Alignment explanation
Indices: 22958365--22958648 Score: 451
Period size: 153 Copynumber: 1.9 Consensus size: 153
22958355 CAAGATCTGC
*
22958365 TATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGACTTTATTTTCGATCTGCTTCGCTGTT
1 TATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGACTTTATTTTCGAGCTGCTTCGCTGTT
* * * * * * **
22958430 AACGCAGGAAGGCAAGATCTGTTATCTTTAACCCGCTCCACTGCAACCAATGGATGCCTCGCTTT
66 AACGCAGGAAGGCAAGATCTGCTATATTTAACCAGCCCCACTACAACCAATGGAGGCAACGCTTT
22958495 GAGCTCAGGAATGCAAAATATGT
131 GAGCTCAGGAATGCAAAATATGT
*
22958518 TATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGATTTTATTTTCGAGCTGCTTCGCTGTT
1 TATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGACTTTATTTTCGAGCTGCTTCGCTGTT
** *
22958583 AACGCAGGAAGGCAAGATCTGCTATATTTAACCAGCCCCACTACAACTGATGGAGGCAAGGCTTT
66 AACGCAGGAAGGCAAGATCTGCTATATTTAACCAGCCCCACTACAACCAATGGAGGCAACGCTTT
22958648 G
131 G
22958649 TTTTCAATCT
Statistics
Matches: 118, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
153 118 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (153 bp):
TATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGACTTTATTTTCGAGCTGCTTCGCTGTT
AACGCAGGAAGGCAAGATCTGCTATATTTAACCAGCCCCACTACAACCAATGGAGGCAACGCTTT
GAGCTCAGGAATGCAAAATATGT
Found at i:22959990 original size:21 final size:21
Alignment explanation
Indices: 22959966--22960011 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
22959956 TAGCCTCTCT
22959966 ATTTTTAC-TCTTTCATTTTTC
1 ATTTTTACAT-TTTCATTTTTC
* *
22959987 ATTTTTTCATTTTCGTTTTTC
1 ATTTTTACATTTTCATTTTTC
22960008 ATTT
1 ATTT
22960012 CCTTTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.13, C:0.15, G:0.02, T:0.70
Consensus pattern (21 bp):
ATTTTTACATTTTCATTTTTC
Found at i:22964224 original size:21 final size:22
Alignment explanation
Indices: 22964198--22964241 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
22964188 CCTTGAAAAG
* *
22964198 TGATTTTTTTAATA-AACGATT
1 TGATTTTATTAAAACAACGATT
22964219 TGATTTTATTAAAACAACGATT
1 TGATTTTATTAAAACAACGATT
22964241 T
1 T
22964242 TGGTCCACGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.48
Consensus pattern (22 bp):
TGATTTTATTAAAACAACGATT
Found at i:22964711 original size:22 final size:22
Alignment explanation
Indices: 22964686--22964777 Score: 112
Period size: 22 Copynumber: 4.2 Consensus size: 22
22964676 AAATTCAATA
* *
22964686 TCAATTTCTTTCAAAAATTCTC
1 TCAATTCCCTTCAAAAATTCTC
* *
22964708 TCAATTCCTTTCAAAATTTCTC
1 TCAATTCCCTTCAAAAATTCTC
* *
22964730 TCAATTCCCTTCAAAATTTCTA
1 TCAATTCCCTTCAAAAATTCTC
* *
22964752 TCAATTTCCTTCCAAAATTCTC
1 TCAATTCCCTTCAAAAATTCTC
22964774 TCAA
1 TCAA
22964778 ACTCTCAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 62 1.00
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.42
Consensus pattern (22 bp):
TCAATTCCCTTCAAAAATTCTC
Found at i:22964793 original size:52 final size:51
Alignment explanation
Indices: 22964727--22964829 Score: 129
Period size: 52 Copynumber: 2.0 Consensus size: 51
22964717 TTCAAAATTT
* * *
22964727 CTCTCAATTCCCTT-CAAAATTTCTATCAATTTCCTTCCAAAATTCTCTCAAA
1 CTCTCAATTCCCTTCCAAAA-TCCTATCAATTTCCTTCAAAAAATCTC-CAAA
*
22964779 CTCTCAAATT-CCTTCCAAAATCCTCTCAATTTCCTTCAAAAAATCTCCAAA
1 CTCTC-AATTCCCTTCCAAAATCCTATCAATTTCCTTCAAAAAATCTCCAAA
22964830 TCCATATTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
51 4 0.09
52 32 0.71
53 9 0.20
ACGTcount: A:0.33, C:0.32, G:0.00, T:0.35
Consensus pattern (51 bp):
CTCTCAATTCCCTTCCAAAATCCTATCAATTTCCTTCAAAAAATCTCCAAA
Found at i:22964818 original size:21 final size:22
Alignment explanation
Indices: 22964779--22964820 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
22964769 TTCTCTCAAA
22964779 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCCAAAATC
* *
22964801 CTCTCAATTTCCTTCAAAAA
1 CTCTCAAATTCCTTCCAAAA
22964821 ATCTCCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (22 bp):
CTCTCAAATTCCTTCCAAAATC
Found at i:22964925 original size:31 final size:30
Alignment explanation
Indices: 22964863--22964926 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
22964853 TTAAATTTCA
*
22964863 TTTTTTAAAAAAATTTTAAAATTTTTTTAT
1 TTTTTTAAAAAAATTTTAAAATTTTTATAT
* *
22964893 TTTTTTTAAATAATTTTAAAATTTTTAATAT
1 TTTTTTAAAAAAATTTTAAAATTTTT-ATAT
22964924 TTT
1 TTT
22964927 CAACAATGGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 24 0.80
31 6 0.20
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (30 bp):
TTTTTTAAAAAAATTTTAAAATTTTTATAT
Found at i:22967219 original size:17 final size:18
Alignment explanation
Indices: 22967197--22967231 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
22967187 TAAAATCCCT
22967197 AACCCT-ACTTAATTAAA
1 AACCCTAACTTAATTAAA
*
22967214 AACCCTAATTTAATTAAA
1 AACCCTAACTTAATTAAA
22967232 TTAAAACCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.31
Consensus pattern (18 bp):
AACCCTAACTTAATTAAA
Found at i:22967219 original size:23 final size:23
Alignment explanation
Indices: 22967185--22967273 Score: 83
Period size: 23 Copynumber: 3.8 Consensus size: 23
22967175 ACATTATTTG
*
22967185 ATTAAAATCCCTAACCCTACTTA
1 ATTAAAAACCCTAACCCTACTTA
** *
22967208 ATTAAAAACCCTAA-TTTAATTAA
1 ATTAAAAACCCTAACCCTACTT-A
22967231 ATT-AAAACCCTAAACCCTACTTA
1 ATTAAAAACCCT-AACCCTACTTA
* *
22967254 ATTTTATAACCCTAACCCTA
1 A-TTAAAAACCCTAACCCTA
22967274 ACCTAATTTA
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
22 12 0.23
23 21 0.40
24 13 0.25
25 7 0.13
ACGTcount: A:0.43, C:0.26, G:0.00, T:0.31
Consensus pattern (23 bp):
ATTAAAAACCCTAACCCTACTTA
Found at i:22967353 original size:57 final size:56
Alignment explanation
Indices: 22967267--22967822 Score: 647
Period size: 57 Copynumber: 9.7 Consensus size: 56
22967257 TTATAACCCT
** *
22967267 AACCCTAACCTAATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTAATTAAAA
1 AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCTAACCTAATTAAATT-AAA
*
22967324 AACCCTAACCTAACCTACTTAAATTAAAAACCCTAACCTAACCTAATTAAATTAAA
1 AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCTAACCTAATTAAATTAAA
*** * **
22967380 AACCCTAACCTTATTTTAATTGAATTAAAAACCCTAACCTAATTTTAATTAAATTAAAAA
1 AACCCTAACC-TAACCTAATTAAATTAAAAACCCTAACCTAA-CCTAATTAAATT--AAA
* **
22967440 CGCTAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCTAATTTTAATTAAATTAAAAA
1 ----AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCTAA-CCTAATTAAATT--AAA
* ***
22967503 CCCTAACCCTAACCTAACCTAATTTAATTAAAAA-CCTAACCTTATTTTAATTAAATTAAA
1 ----AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACC-TAACCTAATTAAATTAAA
* * *
22967563 AACCCTAACCTAACCTAATTTAATAAAAAAACCCTAACCTAACCTACTTAAATTAAA
1 AACCCTAACCTAACCTAATTAAAT-TAAAAACCCTAACCTAACCTAATTAAATTAAA
* *
22967620 AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCTAACCTAATTTAATAAAAA
1 AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCTAACCTAATTAAAT-TAAA
*
22967677 AACCCTAACCTAACCTACTTAAATTAAAAACCCTAACCTAACCTAATTAAATTAAA
1 AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCTAACCTAATTAAATTAAA
* ***
22967733 AACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCTTATTTTAATTAAATTAAA
1 AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACC-TAACCTAATTAAATTAAA
22967790 AACCCTAACCTAA--T--TT-AATTAAAAACCCTAACC
1 AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACC
22967823 CTATTTAATT
Statistics
Matches: 451, Mismatches: 35, Indels: 31
0.87 0.07 0.06
Matches are distributed among these distances:
52 17 0.04
53 2 0.00
55 1 0.00
56 101 0.22
57 198 0.44
58 17 0.04
60 6 0.01
62 19 0.04
63 80 0.18
64 10 0.02
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (56 bp):
AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCTAACCTAATTAAATTAAA
Found at i:22967387 original size:85 final size:85
Alignment explanation
Indices: 22967267--22967843 Score: 696
Period size: 85 Copynumber: 6.8 Consensus size: 85
22967257 TTATAACCCT
**
22967267 AACCCTAACCTAATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAAACCCTAA
1 AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAAACCCTAA
*
22967332 CCTAACCTACTTAAATTAAA
66 CCTAACCTAATTAAATTAAA
*** *
22967352 AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCTTATTTTAATTGAATT-AAAAACCCTA
1 AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACC-TAACCTAATTTAATTAAAAAACCCTA
**
22967416 ACCTAATTTTAATTAAATTAAAAA
65 ACCTAA-CCTAATTAAATT--AAA
* ** *
22967440 CGCTAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCTAATTTTAATTAAATTAAAAACC
1 ----AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCTAA-CCTAATTTAATT-AAAA--
*
22967505 CTAACCCTAACCTAACCTAATTTAATTAAA
58 --AACCCTAACCTAACCTAATTAAATTAAA
*** *
22967535 AA-CCTAACCTTATTTTAATTAAATTAAAAACCCTAACCTAACCTAATTTAATAAAAAAACCCTA
1 AACCCTAACC-TAACCTAATTAAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAAACCCTA
*
22967599 ACCTAACCTACTTAAATTAAA
65 ACCTAACCTAATTAAATTAAA
*
22967620 AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCTAACCTAATTTAATAAAAAAACCCTAA
1 AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAAACCCTAA
*
22967685 CCTAACCTACTTAAATTAAA
66 CCTAACCTAATTAAATTAAA
22967705 AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCTAACCTAATTTAATT-AAAAACCCTAA
1 AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAAACCCTAA
***
22967769 CCTTATTTTAATTAAATTAAA
66 CC-TAACCTAATTAAATTAAA
22967790 AACCCTAACCTAA--T--TT-AATTAAAAACCCTAA-C---CCT-ATTTAATT-AAAAACCCTAA
1 AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAAACCCTAA
22967844 TTAAATTGTA
Statistics
Matches: 441, Mismatches: 33, Indels: 46
0.85 0.06 0.09
Matches are distributed among these distances:
75 19 0.04
76 3 0.01
79 1 0.00
80 15 0.03
81 2 0.00
83 1 0.00
84 13 0.03
85 231 0.52
86 27 0.06
88 3 0.01
89 4 0.01
90 15 0.03
91 31 0.07
92 48 0.11
94 3 0.01
95 3 0.01
97 9 0.02
98 13 0.03
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.29
Consensus pattern (85 bp):
AACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAAACCCTAA
CCTAACCTAATTAAATTAAA
Found at i:22967541 original size:22 final size:23
Alignment explanation
Indices: 22967513--22967557 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
22967503 CCCTAACCCT
22967513 AACCTAACC-TAATTTAATTAAA
1 AACCTAACCTTAATTTAATTAAA
*
22967535 AACCTAACCTTATTTTAATTAAA
1 AACCTAACCTTAATTTAATTAAA
22967558 TTAAAAACCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.36
Consensus pattern (23 bp):
AACCTAACCTTAATTTAATTAAA
Found at i:22967819 original size:18 final size:18
Alignment explanation
Indices: 22967798--22967850 Score: 52
Period size: 23 Copynumber: 2.7 Consensus size: 18
22967788 AAAACCCTAA
22967798 CCTAATTTAATTAAAAAC
1 CCTAATTTAATTAAAAAC
22967816 CCTAACCCTATTTAATTAAAAAC
1 CCT-A----ATTTAATTAAAAAC
*
22967839 CCTAATTAAATT
1 CCTAATTTAATT
22967851 GTAGTTTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 10
0.73 0.03 0.25
Matches are distributed among these distances:
18 10 0.34
19 1 0.03
22 1 0.03
23 17 0.59
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.34
Consensus pattern (18 bp):
CCTAATTTAATTAAAAAC
Found at i:22967832 original size:28 final size:28
Alignment explanation
Indices: 22967267--22967822 Score: 647
Period size: 28 Copynumber: 19.4 Consensus size: 28
22967257 TTATAACCCT
**
22967267 AACCCTAACCTAATTTAATTAAATTAAA
1 AACCCTAACCTAACCTAATTAAATTAAA
*
22967295 AACCCTAACCTAACCTAATTTAATTAAAA
1 AACCCTAACCTAACCTAATTAAATT-AAA
*
22967324 AACCCTAACCTAACCTACTTAAATTAAA
1 AACCCTAACCTAACCTAATTAAATTAAA
22967352 AACCCTAACCTAACCTAATTAAATTAAA
1 AACCCTAACCTAACCTAATTAAATTAAA
*** *
22967380 AACCCTAACCTTATTTTAATTGAATTAAA
1 AACCCTAACC-TAACCTAATTAAATTAAA
**
22967409 AACCCTAACCTAATTTTAATTAAATTAAAAA
1 AACCCTAACCTAA-CCTAATTAAATT--AAA
*
22967440 CGCTAACCCTAACCTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAACCTAATTAAATTAAA
**
22967472 AACCCTAACCTAATTTTAATTAAATTAAAAA
1 AACCCTAACCTAA-CCTAATTAAATT--AAA
*
22967503 CCCTAACCCTAACCTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAACCTAATTAAATTAAA
***
22967535 AA-CCTAACCTTATTTTAATTAAATTAAA
1 AACCCTAACC-TAACCTAATTAAATTAAA
* *
22967563 AACCCTAACCTAACCTAATTTAATAAAAA
1 AACCCTAACCTAACCTAATTAAAT-TAAA
*
22967592 AACCCTAACCTAACCTACTTAAATTAAA
1 AACCCTAACCTAACCTAATTAAATTAAA
22967620 AACCCTAACCTAACCTAATTAAATTAAA
1 AACCCTAACCTAACCTAATTAAATTAAA
* *
22967648 AACCCTAACCTAACCTAATTTAATAAAAA
1 AACCCTAACCTAACCTAATTAAAT-TAAA
*
22967677 AACCCTAACCTAACCTACTTAAATTAAA
1 AACCCTAACCTAACCTAATTAAATTAAA
22967705 AACCCTAACCTAACCTAATTAAATTAAA
1 AACCCTAACCTAACCTAATTAAATTAAA
*
22967733 AACCCTAACCTAACCTAATTTAATTAAA
1 AACCCTAACCTAACCTAATTAAATTAAA
***
22967761 AACCCTAACCTTATTTTAATTAAATTAAA
1 AACCCTAACC-TAACCTAATTAAATTAAA
22967790 AACCCTAACCTAA--T--TT-AATTAAA
1 AACCCTAACCTAACCTAATTAAATTAAA
22967813 AACCCTAACC
1 AACCCTAACC
22967823 CTATTTAATT
Statistics
Matches: 461, Mismatches: 46, Indels: 47
0.83 0.08 0.08
Matches are distributed among these distances:
23 17 0.04
24 2 0.00
26 1 0.00
27 7 0.02
28 227 0.49
29 151 0.33
31 6 0.01
32 6 0.01
34 18 0.04
35 26 0.06
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (28 bp):
AACCCTAACCTAACCTAATTAAATTAAA
Found at i:22971126 original size:85 final size:85
Alignment explanation
Indices: 22970983--22971187 Score: 392
Period size: 85 Copynumber: 2.4 Consensus size: 85
22970973 CAAACTTGCT
*
22970983 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTGACACTATTTGCTCAGAAACGTCAAAAAAA
1 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTGACACTATTTACTCAGAAACGTCAAAAAAA
*
22971048 AATTATTTTCTACATGACCA
66 AATTATTTCCTACATGACCA
22971068 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTGACACTATTTACTCAGAAACGTCAAAAAAA
1 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTGACACTATTTACTCAGAAACGTCAAAAAAA
22971133 AATTATTTCCTACATGACCA
66 AATTATTTCCTACATGACCA
22971153 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTT
1 ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTT
22971188 CACAATTTCT
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 118 1.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.23
Consensus pattern (85 bp):
ACTGTAGCGAAATCGCGTCCACGAGGGCGCGATTTGACACTATTTACTCAGAAACGTCAAAAAAA
AATTATTTCCTACATGACCA
Found at i:22971320 original size:124 final size:125
Alignment explanation
Indices: 22971096--22971376 Score: 381
Period size: 124 Copynumber: 2.3 Consensus size: 125
22971086 CCACGAGGGC
22971096 GCGATTTGACACTATTTACTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
1 GCGATTTGACACTATTTACTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
* * *
22971161 GAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCCTGGTATCA
66 GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTATCA
* * *
22971221 GCGATTTTATACTATTTCCTCAGAAAACGTC-AAAAAAAATTATTT-CTCACATGACC-ACTGTA
1 GCGATTTGACACTATTTACTCAG-AAACGTCAAAAAAAAATTATTTCCT-ACATGACCAACTGTA
* * * **
22971283 GCGAAATCGCGTCCACGAGGCCACTATTTCACAATTTCTTCTTAAATAGCATCCTAGTAGAA
64 GCGAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTATCA
* **
22971345 GTGATTTCCCACTATTTAAC-CAGAAACGTCAA
1 GCGATTTGACACTATTT-ACTCAGAAACGTCAA
22971377 CTCGAAAAAA
Statistics
Matches: 136, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
123 7 0.05
124 79 0.58
125 43 0.32
126 7 0.05
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (125 bp):
GCGATTTGACACTATTTACTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTATCA
Found at i:22975815 original size:20 final size:20
Alignment explanation
Indices: 22975780--22975832 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
22975770 ATTACTATTT
* *
22975780 ATGACATGACCTCGCTGTTC
1 ATGACTTGACCCCGCTGTTC
*
22975800 ATGACTTTACCCCGCTGTTC
1 ATGACTTGACCCCGCTGTTC
22975820 ATGACTTGACCCC
1 ATGACTTGACCCC
22975833 ACTATTTCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.19, C:0.34, G:0.17, T:0.30
Consensus pattern (20 bp):
ATGACTTGACCCCGCTGTTC
Found at i:22979376 original size:70 final size:70
Alignment explanation
Indices: 22978941--22979378 Score: 513
Period size: 70 Copynumber: 6.3 Consensus size: 70
22978931 AATGGACTCA
* * * * * * *
22978941 GCGAGCCTGAAGATTATAGCTAGGAGCTTTTAACTCTCGCTAATTATTTGAAGGTTGCGGTATTA
1 GCGAGCCTTAAAATGATAGCTGGGAGCTTTTAACTCTCGCTAACTATTTGGAGGCTGCGGTATTA
*
22979006 AACTT
66 AACCT
* * * *
22979011 GCGAGCCTTAAAATG-TCAGCTGGGAGCTTTTAGCTATCGCTAACTATTTGGAGGCTGTGGAATT
1 GCGAGCCTTAAAATGAT-AGCTGGGAGCTTTTAACTCTCGCTAACTATTTGGAGGCTGCGGTATT
22979075 AAACCT
65 AAACCT
* * * * * * * *
22979081 GCAAGCCTCAAAATGGTAGTTGGGAGCTTTTAACTCTCTCTAACCATTTGGAGGTTGTGGTATTA
1 GCGAGCCTTAAAATGATAGCTGGGAGCTTTTAACTCTCGCTAACTATTTGGAGGCTGCGGTATTA
22979146 AACCT
66 AACCT
* *
22979151 GCGAGCCTTAAAATTATAGCTGGGAGCTTTTAACTCTCGCTAACTATTTAGAGGCTG-GGATATT
1 GCGAGCCTTAAAATGATAGCTGGGAGCTTTTAACTCTCGCTAACTATTTGGAGGCTGCGG-TATT
*
22979215 AAATCT
65 AAACCT
* * * *
22979221 GCAAGCCTTAAAATGATAGTTGGGAGCTTTTAACTCTTGCTAACTATTTGGAGGCTGCGATATT-
1 GCGAGCCTTAAAATGATAGCTGGGAGCTTTTAACTCTCGCTAACTATTTGGAGGCTGCGGTATTA
*
22979285 AACTTT
66 AAC-CT
*** * * * *
22979291 GCGAGCCTTAAAATGATAGCTCAAAGCTTTTAACTCTCACTAACTGTTTGGAGGCCGCAGTATTA
1 GCGAGCCTTAAAATGATAGCTGGGAGCTTTTAACTCTCGCTAACTATTTGGAGGCTGCGGTATTA
22979356 AACCT
66 AACCT
22979361 GCGAGCCTTAAAATGATA
1 GCGAGCCTTAAAATGATA
22979379 AGTACAAATA
Statistics
Matches: 311, Mismatches: 51, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
69 5 0.02
70 301 0.97
71 5 0.02
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (70 bp):
GCGAGCCTTAAAATGATAGCTGGGAGCTTTTAACTCTCGCTAACTATTTGGAGGCTGCGGTATTA
AACCT
Found at i:22982691 original size:52 final size:48
Alignment explanation
Indices: 22982672--22982874 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
22982662 TGACAAGTGG
* *
22982672 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
22982718 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
22982770 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
22982816 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
22982862 AAAGTGATAAGTG
1 AAAGTGATAAGTG
22982875 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:22982726 original size:98 final size:98
Alignment explanation
Indices: 22982606--22982874 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
22982596 TTTGAGTACT
*
22982606 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
22982671 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
22982704 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
22982769 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
22982802 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
22982867 GATAAGTG
65 GAAAAGTG
22982875 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:22982882 original size:37 final size:37
Alignment explanation
Indices: 22982838--22982983 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
22982828 GATAGCTTTA
*
22982838 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
22982875 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
22982912 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
22982949 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
22982984 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Done.