Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 77 of 205
Found at i:22984314 original size:58 final size:58
Alignment explanation
Indices: 22984237--22984404 Score: 237
Period size: 58 Copynumber: 3.0 Consensus size: 58
22984227 CATGTGAACA
22984237 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
22984296 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATA--
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
* * *
22984352 TGTG--A--T--TT-CGTGTAAGACCATAGTTGGGCTATGGCATCGGTATGTGATTTG
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
22984403 TG
1 TG
22984405 ATTACGTGTA
Statistics
Matches: 104, Mismatches: 3, Indels: 12
0.87 0.03 0.10
Matches are distributed among these distances:
49 38 0.37
50 2 0.02
51 2 0.02
52 1 0.01
54 1 0.01
56 4 0.04
58 51 0.49
59 5 0.05
ACGTcount: A:0.23, C:0.13, G:0.31, T:0.33
Consensus pattern (58 bp):
TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
Found at i:22984346 original size:28 final size:28
Alignment explanation
Indices: 22984256--22984346 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
22984246 GTGATTCCGT
22984256 GTAAGACCATAGCTGGGCTATGGCATCG
1 GTAAGACCATAGCTGGGCTATGGCATCG
** * *
22984284 GTAAG-TGATATG-TGTGATATGTG-ATTCCG
1 GTAAGACCATA-GCTGGGCTATG-GCA-T-CG
22984313 TGTAAGACCATAGCTGGGCTATGGCATCG
1 -GTAAGACCATAGCTGGGCTATGGCATCG
22984342 GTAAG
1 GTAAG
22984347 TGATATGTGA
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 11 0.23
28 13 0.28
29 4 0.09
30 8 0.17
31 11 0.23
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
GTAAGACCATAGCTGGGCTATGGCATCG
Found at i:22984369 original size:49 final size:49
Alignment explanation
Indices: 22984297--22984439 Score: 232
Period size: 49 Copynumber: 2.9 Consensus size: 49
22984287 AGTGATATGT
* *
22984297 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
22984346 GTGATATGTGATTTCGTGTAAGACCATAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
22984395 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCG
22984440 AGAAAACGAA
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 88 1.00
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
Found at i:22987650 original size:52 final size:48
Alignment explanation
Indices: 22987631--22987833 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
22987621 TGACAAGTGG
* *
22987631 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
22987677 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
22987729 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
22987775 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
22987821 AAAGTGATAAGTG
1 AAAGTGATAAGTG
22987834 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:22987685 original size:98 final size:98
Alignment explanation
Indices: 22987565--22987833 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
22987555 TTTGAGTACT
*
22987565 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
22987630 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
22987663 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
22987728 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
22987761 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
22987826 GATAAGTG
65 GAAAAGTG
22987834 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:22987841 original size:37 final size:37
Alignment explanation
Indices: 22987797--22987942 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
22987787 GATAGCTTTA
*
22987797 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
22987834 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
22987871 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
22987908 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
22987943 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:22992951 original size:20 final size:20
Alignment explanation
Indices: 22992928--22992967 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
22992918 ATACATACTA
22992928 TTACTATTAATGACATGACC
1 TTACTATTAATGACATGACC
* * *
22992948 TTACTGTTCATGACTTGACC
1 TTACTATTAATGACATGACC
22992968 CCATTTTTCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.38
Consensus pattern (20 bp):
TTACTATTAATGACATGACC
Found at i:22996121 original size:18 final size:18
Alignment explanation
Indices: 22996098--22996135 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
22996088 GAAAGAACGA
22996098 GTGAGTTCCATCAGTGAT
1 GTGAGTTCCATCAGTGAT
22996116 GTGAGTTCCATCAGTGAT
1 GTGAGTTCCATCAGTGAT
22996134 GT
1 GT
22996136 TTCCGTTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (18 bp):
GTGAGTTCCATCAGTGAT
Found at i:22998473 original size:63 final size:63
Alignment explanation
Indices: 22998351--22998473 Score: 156
Period size: 63 Copynumber: 2.0 Consensus size: 63
22998341 CTACAATCCA
* *
22998351 GACAATCAAACAAAACTTAGTTTAATCAATTGAAACATAAAAATATTTGTCATTAGATGACCG
1 GACAATCAAACAAAACTTAGTTTAATCAATAGAAACATAAAAATATTTGTCATCAGATGACCG
* * * * * * * *
22998414 GACATTCAAACAAAACTTGGTTTCATCTATAGAAATATACAAATCTTTGTCATCGGATGA
1 GACAATCAAACAAAACTTAGTTTAATCAATAGAAACATAAAAATATTTGTCATCAGATGA
22998474 ACCAGACTAA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
63 50 1.00
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.30
Consensus pattern (63 bp):
GACAATCAAACAAAACTTAGTTTAATCAATAGAAACATAAAAATATTTGTCATCAGATGACCG
Found at i:23000135 original size:13 final size:13
Alignment explanation
Indices: 23000117--23000141 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23000107 CAATATATTT
23000117 ATTAATTAAAAAC
1 ATTAATTAAAAAC
23000130 ATTAATTAAAAA
1 ATTAATTAAAAA
23000142 TAAAAAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAC
Found at i:23006186 original size:42 final size:42
Alignment explanation
Indices: 23006061--23006190 Score: 149
Period size: 41 Copynumber: 3.1 Consensus size: 42
23006051 ACTAACACTT
* * * * * *
23006061 AGCCTGCTAGACTTAAAGCCTGAT-TCAG-TACACTGGCATTT
1 AGCCTGCTAGACATAAAGTCTGATAT-TGTTTCACCGGCATTA
* *
23006102 AGCCTGCTAGACATATAGTCTGA-AATGTTTCACCGGCATTA
1 AGCCTGCTAGACATAAAGTCTGATATTGTTTCACCGGCATTA
*
23006143 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCACCGGCATTA
1 AGCCTGCTAGACATAAAGTCTGATATTGTTTCACCGGCATTA
23006185 AGCCTG
1 AGCCTG
23006191 AATATAAAAC
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
40 1 0.01
41 51 0.68
42 23 0.31
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (42 bp):
AGCCTGCTAGACATAAAGTCTGATATTGTTTCACCGGCATTA
Found at i:23023820 original size:30 final size:30
Alignment explanation
Indices: 23023786--23023843 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
23023776 AAACCTTTTA
*
23023786 TTTTCCCCCAAAATTTTTACTCCCTTCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCAC
* *
23023816 TTTTCCCCTAAAACTTTTATTCCCTTCC
1 TTTTCCCCCAAAACTTTTACTCCCTTCC
23023844 CATCCCACCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.19, C:0.38, G:0.00, T:0.43
Consensus pattern (30 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCAC
Found at i:23023968 original size:17 final size:18
Alignment explanation
Indices: 23023929--23023984 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 18
23023919 ACTCCCCCTA
23023929 TTTACTTTCCCTC-AAAC-T
1 TTTA-TTTCCC-CAAAACTT
23023947 TTTA-TTCCCCAAAACTT
1 TTTATTTCCCCAAAACTT
*
23023964 TTTATTTTCCCCTAAACTT
1 TTTA-TTTCCCCAAAACTT
23023983 TT
1 TT
23023985 ACTTCTCACC
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
15 1 0.03
16 9 0.27
17 5 0.15
18 4 0.12
19 14 0.42
ACGTcount: A:0.23, C:0.29, G:0.00, T:0.48
Consensus pattern (18 bp):
TTTATTTCCCCAAAACTT
Found at i:23029033 original size:44 final size:42
Alignment explanation
Indices: 23028883--23029052 Score: 130
Period size: 43 Copynumber: 4.0 Consensus size: 42
23028873 TGTACAATGT
* * * * * *
23028883 CAACGCCCCAGACGTCGTCTTATATGTAATCAAATATCGATGT
1 CAACGTCCCAGACGTGGTCTTACACGAAATCAAATA-CGATGC
*
23028926 C-ACTGTCCCAGACAG-GGTCTTACACGAAATCATATACGATGC
1 CAAC-GTCCCAGAC-GTGGTCTTACACGAAATCAAATACGATGC
* * * *
23028968 CAATGTCTCAGTCATGGTCTTACACGTAAATCTCAAATA-GATGC
1 CAACGTCCCAGACGTGGTCTTACACG-AAA--TCAAATACGATGC
* * *
23029012 CAACGTCCCAGACGTGATCTTACACGAGATCACATATCGAT
1 CAACGTCCCAGACGTGGTCTTACACGAAATCAAATA-CGAT
23029053 ATCCTATGTC
Statistics
Matches: 99, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
41 6 0.06
42 26 0.26
43 34 0.34
44 27 0.27
45 6 0.06
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (42 bp):
CAACGTCCCAGACGTGGTCTTACACGAAATCAAATACGATGC
Found at i:23036711 original size:42 final size:43
Alignment explanation
Indices: 23036640--23036751 Score: 111
Period size: 42 Copynumber: 2.6 Consensus size: 43
23036630 TCTTATATGT
* *
23036640 AATCAAATATCGATGTCACTGTCCCAGACAAAGTCTTACACGA
1 AATCAAATATCGATGCCAATGTCCCAGACAAAGTCTTACACGA
* * ** *
23036683 AATCATATA-CGATGCCAATGTCTCAGACATGGTCTTACATGTA
1 AATCAAATATCGATGCCAATGTCCCAGACAAAGTCTTACACG-A
* *
23036726 AATCTCAA-ATCGATGCCAACGTCCCA
1 AATC-AAATATCGATGCCAATGTCCCA
23036752 TACGTGATCT
Statistics
Matches: 55, Mismatches: 11, Indels: 5
0.77 0.15 0.07
Matches are distributed among these distances:
42 26 0.47
43 14 0.25
44 15 0.27
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (43 bp):
AATCAAATATCGATGCCAATGTCCCAGACAAAGTCTTACACGA
Found at i:23042957 original size:29 final size:29
Alignment explanation
Indices: 23042877--23042956 Score: 99
Period size: 31 Copynumber: 2.7 Consensus size: 29
23042867 ATTTCAAAAT
* *
23042877 TATACATGAACTATGATTTAATGTACAATTG
1 TATACATGAACTTTGATTT--TGTGCAATTG
23042908 TATACATGAACTTTGATTTTGTGCAATTG
1 TATACATGAACTTTGATTTTGTGCAATTG
23042937 TATACAT-AACATTTTGATTT
1 TATACATGAAC--TTTGATTT
23042957 GATCCAATTC
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
28 3 0.07
29 16 0.36
30 8 0.18
31 18 0.40
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44
Consensus pattern (29 bp):
TATACATGAACTTTGATTTTGTGCAATTG
Found at i:23042965 original size:30 final size:29
Alignment explanation
Indices: 23042877--23042965 Score: 92
Period size: 29 Copynumber: 3.0 Consensus size: 29
23042867 ATTTCAAAAT
* *
23042877 TATACATGAACTATGATTTAATGTACAATTG
1 TATACATGAACTTTGATTT--TGTCCAATTG
*
23042908 TATACATGAACTTTGATTTTGTGCAATTG
1 TATACATGAACTTTGATTTTGTCCAATTG
23042937 TATACAT-AACATTTTGA-TTTGATCCAATT
1 TATACATGAAC--TTTGATTTTG-TCCAATT
23042966 CTTGTAAATT
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
28 3 0.06
29 20 0.38
30 11 0.21
31 18 0.35
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43
Consensus pattern (29 bp):
TATACATGAACTTTGATTTTGTCCAATTG
Found at i:23044422 original size:20 final size:20
Alignment explanation
Indices: 23044397--23044440 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
23044387 TAAGTTTGTT
*
23044397 TTTTAAATTTTGTCATTAGA
1 TTTTAAAATTTGTCATTAGA
23044417 TTTTAAAATTTGTCATTAGA
1 TTTTAAAATTTGTCATTAGA
23044437 TTTT
1 TTTT
23044441 CTGTCTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.05, G:0.09, T:0.57
Consensus pattern (20 bp):
TTTTAAAATTTGTCATTAGA
Found at i:23047199 original size:37 final size:38
Alignment explanation
Indices: 23047142--23047214 Score: 139
Period size: 37 Copynumber: 1.9 Consensus size: 38
23047132 GACAGTTTTC
23047142 AATTACAATTTTTTTTCTCAACATGGAAGTTTTGTTTA
1 AATTACAATTTTTTTTCTCAACATGGAAGTTTTGTTTA
23047180 AATTAC-ATTTTTTTTCTCAACATGGAAGTTTTGTT
1 AATTACAATTTTTTTTCTCAACATGGAAGTTTTGTT
23047215 ATATTAGAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 29 0.83
38 6 0.17
ACGTcount: A:0.27, C:0.11, G:0.11, T:0.51
Consensus pattern (38 bp):
AATTACAATTTTTTTTCTCAACATGGAAGTTTTGTTTA
Found at i:23047211 original size:20 final size:20
Alignment explanation
Indices: 23047151--23047211 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
23047141 CAATTACAAT
23047151 TTTTTTTCTCAACATGGAAG
1 TTTTTTTCTCAACATGGAAG
* * *
23047171 TTTTGTT-T-AA-AT-TACAT
1 TTTTTTTCTCAACATGGA-AG
23047188 TTTTTTTCTCAACATGGAAG
1 TTTTTTTCTCAACATGGAAG
23047208 TTTT
1 TTTT
23047212 GTTATATTAG
Statistics
Matches: 30, Mismatches: 6, Indels: 10
0.65 0.13 0.22
Matches are distributed among these distances:
16 1 0.03
17 9 0.30
18 3 0.10
19 3 0.10
20 13 0.43
21 1 0.03
ACGTcount: A:0.25, C:0.11, G:0.11, T:0.52
Consensus pattern (20 bp):
TTTTTTTCTCAACATGGAAG
Found at i:23048055 original size:85 final size:84
Alignment explanation
Indices: 23047963--23048170 Score: 229
Period size: 85 Copynumber: 2.5 Consensus size: 84
23047953 CGTTTATAGA
* * * *
23047963 AAAAAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTAAGGAAATAAACGCCGCTAAAGATTAT
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCT-AGGAAAAAAACGCCACTAAAGATCAT
* * **
23048028 GTTCTTTAGTGGCGCTTAGG
65 ATACTTTAACGGCGCTTAGG
* * ** *
23048048 AAAAAACGCCGCCAAAGATCGTGTTCTTTAGCGGCGCTTTGAAAAAAACGCCACTAAAGATCGTA
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTAGGAAAAAAACGCCACTAAAGATCATA
*
23048113 TACTTTAACGGCGCTTTGG
66 TACTTTAACGGCGCTTAGG
* * *
23048132 AGGAAAACGCCGCTAAA-AGTAATGTTCTATAGCGGCGCT
1 A-AAAAACGCCGCTAAAGA-TCATGTTCTTTAGCGGCGCT
23048171 TGTTCAAAAA
Statistics
Matches: 102, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
84 37 0.36
85 65 0.64
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.24
Consensus pattern (84 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTAGGAAAAAAACGCCACTAAAGATCATA
TACTTTAACGGCGCTTAGG
Found at i:23048073 original size:42 final size:42
Alignment explanation
Indices: 23047963--23048214 Score: 251
Period size: 42 Copynumber: 6.0 Consensus size: 42
23047953 CGTTTATAGA
* *
23047963 AAAAAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTAAGG
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
* *
23048005 AAATAAACGCCGCTAAAGATTATGTTCTTTAGTGGCGCTTAGG
1 AAA-AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
* * * *
23048048 AAAAAACGCCGCCAAAGATCGTGTTCTTTAGCGGCGCTTTGA
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
* * * * * *
23048090 AAAAAACGCCACTAAAGATCGTATACTTTAACGGCGCTTTGG
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
* * * *
23048132 AGGAAAACGCCGCTAAA-AGTAATGTTCTATAGCGGCGCTT-GTT
1 A-AAAAACGCCGCTAAAGA-TCATGTTCTTTAGCGGCGCTTAG-G
*
23048175 CAAAAACGCCGCTAATAG-T-AGTGTTCTTTAGCGGCGCTTA
1 AAAAAACGCCGCTAA-AGATCA-TGTTCTTTAGCGGCGCTTA
23048215 TTTCACATAC
Statistics
Matches: 174, Mismatches: 28, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
41 1 0.01
42 106 0.61
43 67 0.39
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (42 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
Found at i:23048100 original size:127 final size:127
Alignment explanation
Indices: 23047961--23048213 Score: 316
Period size: 127 Copynumber: 2.0 Consensus size: 127
23047951 GGCGTTTATA
* * *
23047961 GAAAAAAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTAAGGA-AATAAACGCCGCT-AAAGA
1 GAAAAAAACGCCACTAAAGATCATATACTTTAACGGCGCTAAGGAGAA-AAACGCCGCTAAAAG-
* * * *
23048024 TTATGTTCTTTAGTGGCGCTTAG-GAAAAAACGCCGCCAA-AGATCGTGTTCTTTAGCGGCGCTT
64 TAATGTTCTATAGCGGCGCTT-GTGAAAAAACGCCGCCAATAG-TAGTGTTCTTTAGCGGCGCTT
23048087 T
127 T
* ** *
23048088 GAAAAAAACGCCACTAAAGATCGTATACTTTAACGGCGCTTTGGAGGAAAACGCCGCTAAAAGTA
1 GAAAAAAACGCCACTAAAGATCATATACTTTAACGGCGCTAAGGAGAAAAACGCCGCTAAAAGTA
** *
23048153 ATGTTCTATAGCGGCGCTTGTTCAAAAACGCCGCTAATAGTAGTGTTCTTTAGCGGCGCTT
66 ATGTTCTATAGCGGCGCTTGTGAAAAAACGCCGCCAATAGTAGTGTTCTTTAGCGGCGCTT
23048214 ATTTCACATA
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
126 1 0.01
127 100 0.93
128 7 0.06
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (127 bp):
GAAAAAAACGCCACTAAAGATCATATACTTTAACGGCGCTAAGGAGAAAAACGCCGCTAAAAGTA
ATGTTCTATAGCGGCGCTTGTGAAAAAACGCCGCCAATAGTAGTGTTCTTTAGCGGCGCTTT
Found at i:23048686 original size:21 final size:21
Alignment explanation
Indices: 23048662--23048730 Score: 102
Period size: 21 Copynumber: 3.3 Consensus size: 21
23048652 GCTTCTATCG
*
23048662 CTGCTTCTCTCGCTGCGGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
23048683 CTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
* *
23048704 CTGCTTCCCTCGCTGCCGCCT
1 CTGCTTCTCTCGCTGCAGCCT
23048725 CTGCTT
1 CTGCTT
23048731 TAAGTTGTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.01, C:0.43, G:0.20, T:0.35
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:23054256 original size:9 final size:9
Alignment explanation
Indices: 23054239--23054496 Score: 204
Period size: 9 Copynumber: 29.8 Consensus size: 9
23054229 TATGTATTAA
*
23054239 GTAAATTAT
1 GTAAGTTAT
23054248 GTAAGTTAT
1 GTAAGTTAT
*
23054257 GTACGTGTA-
1 GTAAGT-TAT
23054266 -TAAGTTAT
1 GTAAGTTAT
23054274 GTAAGTTAT
1 GTAAGTTAT
*
23054283 GT-A-TTAA
1 GTAAGTTAT
*
23054290 GTAAGCTAT
1 GTAAGTTAT
*
23054299 GTAAGTTGT
1 GTAAGTTAT
23054308 GT-A-TTAT
1 GTAAGTTAT
23054315 GTAAGTTAT
1 GTAAGTTAT
23054324 GTAAGTTAT
1 GTAAGTTAT
** *
23054333 CAAAGTAAT
1 GTAAGTTAT
*
23054342 GTATGTTAT
1 GTAAGTTAT
*
23054351 TTAAG-T-T
1 GTAAGTTAT
23054358 GTAAGTTAT
1 GTAAGTTAT
*
23054367 -TATGTATTAT
1 GTAAG--TTAT
23054377 GTAAGTTAT
1 GTAAGTTAT
23054386 GTAAGTTAT
1 GTAAGTTAT
23054395 GTAAGTTAAAT
1 GTAAGTT--AT
23054406 GT-A-TTAT
1 GTAAGTTAT
*
23054413 GTAGGTTAT
1 GTAAGTTAT
*
23054422 GTAGGTTAT
1 GTAAGTTAT
23054431 GTAAGTTAT
1 GTAAGTTAT
* *
23054440 GGAAGTTTT
1 GTAAGTTAT
23054449 GT-A-TTAT
1 GTAAGTTAT
23054456 GTAAGTTAT
1 GTAAGTTAT
*
23054465 GTAAGTTAC
1 GTAAGTTAT
* *
23054474 GTATGCTAT
1 GTAAGTTAT
23054483 GT-A-TTAT
1 GTAAGTTAT
23054490 GTAAGTT
1 GTAAGTT
23054497 GTTATGTTAT
Statistics
Matches: 196, Mismatches: 33, Indels: 40
0.73 0.12 0.15
Matches are distributed among these distances:
7 31 0.16
8 16 0.08
9 135 0.69
10 7 0.04
11 7 0.04
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:23054259 original size:25 final size:25
Alignment explanation
Indices: 23054228--23054496 Score: 148
Period size: 25 Copynumber: 10.7 Consensus size: 25
23054218 TGATATATAT
*
23054228 TTATGTATTAAGTAAATTATGTAAG
1 TTATGTATTAAGTAAGTTATGTAAG
23054253 TTATGTACGTGT-A-TAAGTTATGTAAG
1 TTATGTA--T-TAAGTAAGTTATGTAAG
*
23054279 TTATGTATTAAGTAAGCTATGTAAG
1 TTATGTATTAAGTAAGTTATGTAAG
* *
23054304 TTGTGTATTATGTAAGTTATGTAAG
1 TTATGTATTAAGTAAGTTATGTAAG
* * *
23054329 TTAT-CA--AAGTAA-TGTATGTTAT
1 TTATGTATTAAGTAAGT-TATGTAAG
* *
23054351 TTAAGT-TGTAAGTTA-TTATGT-A-
1 TTATGTAT-TAAGTAAGTTATGTAAG
*
23054373 TTATGTAAGTTATGTAAGTTATGTAAG
1 TTATGT-A-TTAAGTAAGTTATGTAAG
* * *
23054400 TTAAATGTATTATGTAGGTTATGTAGG
1 TT--ATGTATTAAGTAAGTTATGTAAG
* * *
23054427 TTATGTAAGTTATGGAAGTTTTGT-A-
1 TTATGT-A-TTAAGTAAGTTATGTAAG
* * *
23054452 TTATGTAAGTTATGTAAGTTACGTATG
1 TTATGT-A-TTAAGTAAGTTATGTAAG
* *
23054479 CTATGTATTATGTAAGTT
1 TTATGTATTAAGTAAGTT
23054497 GTTATGTTAT
Statistics
Matches: 195, Mismatches: 27, Indels: 44
0.73 0.10 0.17
Matches are distributed among these distances:
21 1 0.01
22 19 0.10
23 2 0.01
24 13 0.07
25 93 0.48
26 22 0.11
27 39 0.20
28 2 0.01
29 4 0.02
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (25 bp):
TTATGTATTAAGTAAGTTATGTAAG
Found at i:23054328 original size:34 final size:34
Alignment explanation
Indices: 23054243--23054496 Score: 193
Period size: 34 Copynumber: 7.4 Consensus size: 34
23054233 TATTAAGTAA
*
23054243 ATTATGTAAGTTATGTACGTGTA--TAAGTTATGT
1 ATTATGTAAGTTATGTAAGT-TATGTAAGTTATGT
* * *
23054276 AAGTTATGT-A-TTAAGTAAGCTATGTAAGTTGTGT
1 -A-TTATGTAAGTTATGTAAGTTATGTAAGTTATGT
** *
23054310 ATTATGTAAGTTATGTAAGTTATCAAAGTAATGT
1 ATTATGTAAGTTATGTAAGTTATGTAAGTTATGT
* *
23054344 ATGTTATTTAAG-T-TGTAAGTTAT-TATGTATTATGT
1 A--TTATGTAAGTTATGTAAGTTATGTAAG--TTATGT
23054379 AAGTTATGTAAGTTATGTAAGTTAAATGT-A-TTATGT
1 -A-TTATGTAAGTTATGTAAGTT--ATGTAAGTTATGT
* * *
23054415 AGGTTATGTAGGTTATGTAAGTTATGGAAGTTTTGT
1 A--TTATGTAAGTTATGTAAGTTATGTAAGTTATGT
* * *
23054451 ATTATGTAAGTTATGTAAGTTACGTATGCTATGT
1 ATTATGTAAGTTATGTAAGTTATGTAAGTTATGT
23054485 ATTATGTAAGTT
1 ATTATGTAAGTT
23054497 GTTATGTTAT
Statistics
Matches: 177, Mismatches: 25, Indels: 36
0.74 0.11 0.15
Matches are distributed among these distances:
32 8 0.05
33 11 0.06
34 82 0.46
35 23 0.13
36 42 0.24
37 8 0.05
39 2 0.01
40 1 0.01
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.45
Consensus pattern (34 bp):
ATTATGTAAGTTATGTAAGTTATGTAAGTTATGT
Found at i:23054514 original size:79 final size:77
Alignment explanation
Indices: 23054369--23054526 Score: 203
Period size: 79 Copynumber: 2.0 Consensus size: 77
23054359 TAAGTTATTA
* * *
23054369 TGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAGGTTATGTA
1 TGTATTATGTAAGTTATGTAAGTTACGTAAGCT-AATGTATTATGTAGGTTATGTA-GTTACGTA
*
23054434 AGTTATGGAAGTTT
64 AGTTATGCAAGTTT
*
23054448 TGTATTATGTAAGTTATGTAAGTTACGTATGCT-ATGTATTATGTAAGTTGTTATGTTA-TTACG
1 TGTATTATGTAAGTTATGTAAGTTACGTAAGCTAATGTATTATGT-AG--GTTATG-TAGTTACG
23054511 TAAGTTATGCAAGTTT
62 TAAGTTATGCAAGTTT
23054527 ATATATAAGC
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
77 11 0.16
78 2 0.03
79 49 0.70
80 6 0.09
81 2 0.03
ACGTcount: A:0.29, C:0.03, G:0.22, T:0.46
Consensus pattern (77 bp):
TGTATTATGTAAGTTATGTAAGTTACGTAAGCTAATGTATTATGTAGGTTATGTAGTTACGTAAG
TTATGCAAGTTT
Found at i:23054686 original size:129 final size:129
Alignment explanation
Indices: 23054543--23054913 Score: 662
Period size: 129 Copynumber: 2.9 Consensus size: 129
23054533 AAGCTTGTAG
* **
23054543 ATAACTTATGTAAGTTAATATGTAAGTAATGTGTTATGTAAGTTTATATAAAAAAAATTTATAAG
1 ATAAGTTATGTAAGTTAATATGTAAGTAATGCATTATGTAAGTTTATATAAAAAAAATTTATAAG
23054608 TTATGTATTATGTAAGTTTACATATAAGTTTATGTGATAGTTATGTAAGTTTATATAAATATTA
66 TTATGTATTATGTAAGTTTACATATAAGTTTATGTGATAGTTATGTAAGTTTATATAAATATTA
23054672 ATAAGTTATGTAAGTTAATATGTAAGTAATGCATTATGTAAGTTTATATAAAAAAAATTTATAAG
1 ATAAGTTATGTAAGTTAATATGTAAGTAATGCATTATGTAAGTTTATATAAAAAAAATTTATAAG
23054737 TTATGTATTATGTAAGTTTACATATAAGTTTATGTGATAGTTATGTAAGTTTATATAAATATTA
66 TTATGTATTATGTAAGTTTACATATAAGTTTATGTGATAGTTATGTAAGTTTATATAAATATTA
23054801 ATAAGTTATGTAAGTTAATATGTAAGTAATGCATTATGTAAGTTTATATAAAAAAAATTTATAAG
1 ATAAGTTATGTAAGTTAATATGTAAGTAATGCATTATGTAAGTTTATATAAAAAAAATTTATAAG
* *
23054866 TTATGTATTATGTATGTTTATATATAAG-TTA--TG-TA-TTATGTAAGTTTA
66 TTATGTATTATGTAAGTTTACATATAAGTTTATGTGATAGTTATGTAAGTTTA
23054914 CATATAAGTT
Statistics
Matches: 237, Mismatches: 5, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
124 13 0.05
125 2 0.01
126 2 0.01
128 3 0.01
129 217 0.92
ACGTcount: A:0.40, C:0.01, G:0.14, T:0.44
Consensus pattern (129 bp):
ATAAGTTATGTAAGTTAATATGTAAGTAATGCATTATGTAAGTTTATATAAAAAAAATTTATAAG
TTATGTATTATGTAAGTTTACATATAAGTTTATGTGATAGTTATGTAAGTTTATATAAATATTA
Found at i:23054838 original size:157 final size:157
Alignment explanation
Indices: 23054677--23054973 Score: 418
Period size: 157 Copynumber: 1.9 Consensus size: 157
23054667 TATTAATAAG
** ** * *
23054677 TTATGTAAGTTAATATGTAAGTAATGCATTA-TGTAAGT-TTATATAAAAAAAATTTATAAGTTA
1 TTATGTAAGTTAATATAAAAAAAATGCATAAGT-TAAGTATTATAT-AAAAAAATATATAAGTTA
23054740 TGTATTATGTAAGTTTACATATAAGTTTATGTGATAGTTATGTAAGTTTATATAAATATTAATAA
64 TGTATTATGTAAGTTTACATATAAGTTTATGTGATAGTTATGTAAGTTTATATAAATATTAATAA
23054805 GTTATGTAAGTTAATATGTAAGTAATGCA
129 GTTATGTAAGTTAATATGTAAGTAATGCA
* ** * * *****
23054834 TTATGTAAGTTTATATAAAAAAAATTTATAAGTTATGTATTATGTATGTTTATATATAAGTTATG
1 TTATGTAAGTTAATATAAAAAAAATGCATAAGTTAAGTATTATATAAAAAAATATATAAGTTATG
23054899 TATTATGTAAGTTTACATATAAGTTTATGTGATAGTTATGTAAGTTTATATAAATATTAATAAGT
66 TATTATGTAAGTTTACATATAAGTTTATGTGATAGTTATGTAAGTTTATATAAATATTAATAAGT
23054964 TATGTAAGTT
131 TATGTAAGTT
23054974 CTTGTACATA
Statistics
Matches: 122, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
157 116 0.95
158 6 0.05
ACGTcount: A:0.40, C:0.01, G:0.14, T:0.45
Consensus pattern (157 bp):
TTATGTAAGTTAATATAAAAAAAATGCATAAGTTAAGTATTATATAAAAAAATATATAAGTTATG
TATTATGTAAGTTTACATATAAGTTTATGTGATAGTTATGTAAGTTTATATAAATATTAATAAGT
TATGTAAGTTAATATGTAAGTAATGCA
Found at i:23054898 original size:28 final size:28
Alignment explanation
Indices: 23054860--23054946 Score: 111
Period size: 28 Copynumber: 2.9 Consensus size: 28
23054850 AAAAAAAATT
* *
23054860 TATAAGTTATGTATTATGTATGTTTATA
1 TATAAGTTATGTATTATGTAAGTTTACA
23054888 TATAAGTTATGTATTATGTAAGTTTACA
1 TATAAGTTATGTATTATGTAAGTTTACA
23054916 TATAAGTTTATGTGATAGTTATGTAAGTTTA
1 TATAAG-TTA--TG-TA-TTATGTAAGTTTA
23054947 TATAAATATT
Statistics
Matches: 52, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
28 32 0.62
29 3 0.06
31 2 0.04
32 2 0.04
33 13 0.25
ACGTcount: A:0.33, C:0.01, G:0.16, T:0.49
Consensus pattern (28 bp):
TATAAGTTATGTATTATGTAAGTTTACA
Found at i:23054911 original size:16 final size:16
Alignment explanation
Indices: 23054862--23054911 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
23054852 AAAAAATTTA
23054862 TAAGTTATGTATTATG
1 TAAGTTATGTATTATG
* *
23054878 TATG-T-T-TA-TATA
1 TAAGTTATGTATTATG
23054890 TAAGTTATGTATTATG
1 TAAGTTATGTATTATG
23054906 TAAGTT
1 TAAGTT
23054912 TACATATAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
12 6 0.23
13 3 0.12
14 2 0.08
15 3 0.12
16 12 0.46
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (16 bp):
TAAGTTATGTATTATG
Found at i:23055133 original size:13 final size:13
Alignment explanation
Indices: 23055115--23055226 Score: 109
Period size: 13 Copynumber: 8.5 Consensus size: 13
23055105 TAAATTTTAG
*
23055115 TAAGTAATGTATT
1 TAAGTAATATATT
*
23055128 TAAGTAACATATT
1 TAAGTAATATATT
*
23055141 TAAGTAATAAATT
1 TAAGTAATATATT
** *
23055154 TAACCAA-ATTTT
1 TAAGTAATATATT
*
23055166 AGTAAGTAATGTATT
1 --TAAGTAATATATT
*
23055181 TAAGTAATTTATT
1 TAAGTAATATATT
23055194 TAAGTAATATATT
1 TAAGTAATATATT
*
23055207 CAAGTAATATATT
1 TAAGTAATATATT
*
23055220 AAAGTAA
1 TAAGTAA
23055227 ATTTTAGTAA
Statistics
Matches: 80, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
12 3 0.04
13 69 0.86
14 5 0.06
15 3 0.04
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.41
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:23055253 original size:66 final size:66
Alignment explanation
Indices: 23055115--23055253 Score: 170
Period size: 66 Copynumber: 2.1 Consensus size: 66
23055105 TAAATTTTAG
* * ** *
23055115 TAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAACCAAATTTTAGTAAGTAATGTAT
1 TAAGTAATGTATTTAAGTAACATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATAT
23055180 T
66 T
* * * ** *
23055181 TAAGTAATTTATTTAAGTAATATATTCAAGTAATATATTAAAGTAAATTTTAGTAAAAAATATGT
1 TAAGTAATGTATTTAAGTAACATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATAT
23055246 T
66 T
*
23055247 TTAGTAA
1 TAAGTAA
23055254 GTAATGTAAG
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.42
Consensus pattern (66 bp):
TAAGTAATGTATTTAAGTAACATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATAT
T
Found at i:23055409 original size:20 final size:19
Alignment explanation
Indices: 23055377--23055428 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
23055367 TTGTAAAAAT
23055377 ATATTAAAA-ATATAATAA
1 ATATTAAAATATATAATAA
*
23055395 ATATTGAAAATATATATTAA
1 ATATT-AAAATATATAATAA
*
23055415 CT-TTAAAATATATA
1 ATATTAAAATATATA
23055429 TTAATAAGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 15 0.50
19 6 0.20
20 9 0.30
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (19 bp):
ATATTAAAATATATAATAA
Found at i:23056208 original size:15 final size:15
Alignment explanation
Indices: 23056188--23056219 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
23056178 GCAATAACAG
23056188 TAAATTAGTACCAAA
1 TAAATTAGTACCAAA
23056203 TAAATTAGTACCAAA
1 TAAATTAGTACCAAA
23056218 TA
1 TA
23056220 CTTCAACCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.06, T:0.28
Consensus pattern (15 bp):
TAAATTAGTACCAAA
Found at i:23058002 original size:147 final size:146
Alignment explanation
Indices: 23057747--23058082 Score: 336
Period size: 147 Copynumber: 2.3 Consensus size: 146
23057737 CCTCGTATCG
* * * * *
23057747 ATAAATGTTAAAACATTTTTGCGGCATTTTAATTAAAGCGCCACTAACTATAAATCAAAACGCAG
1 ATAAATGTTAAAACAATGTTGCGGCATTTTAAGTAAAGCGCCACTAAATATAAATCAAAACGAAG
* * *
23057812 TCGCTTCATCAACACTTACCTCAAACCCTTGGCGTTTTAAAAAAATCACCACTAATAACATTTAA
66 TCGCTTCACCAACACTTAACTCAAACCCTTGGCGTTTCAAAAAAA-CACCACTAATAACATTTAA
23057877 AAAACGGCAGCGTTTCT
130 AAAACGGCAGCGTTTCT
* * *
23057894 ATAAATGTTAGAACAATGTTGTGGCATTTTAAGTAAAGCGCCACTAAATATACGATC-AAACGAA
1 ATAAATGTTAAAACAATGTTGCGGCATTTTAAGTAAAGCGCCACTAAATATA-AATCAAAACGAA
* * * * * * * * * *
23057958 GTCGTTTCCCCAACATTTAACTC-AAGCTTGTGGCGTTTCCAAAAAACGCCACTAGTACCATTGA
65 GTCGCTTCACCAACACTTAACTCAAACCCT-TGGCGTTTCAAAAAAACACCACTAATAACATTTA
* * * * *
23058022 CAAAACGACAACATTTCG
129 AAAAACGGCAGCGTTTCT
** * * *
23058040 ATAAA-CATAAATACAATTTTGCGGCGTTTTATGTAAAGCGCCA
1 ATAAATGTTAAA-ACAATGTTGCGGCATTTTAAGTAAAGCGCCA
23058083 GTAATAGCAA
Statistics
Matches: 153, Mismatches: 33, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
145 3 0.02
146 63 0.41
147 84 0.55
148 3 0.02
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (146 bp):
ATAAATGTTAAAACAATGTTGCGGCATTTTAAGTAAAGCGCCACTAAATATAAATCAAAACGAAG
TCGCTTCACCAACACTTAACTCAAACCCTTGGCGTTTCAAAAAAACACCACTAATAACATTTAAA
AAACGGCAGCGTTTCT
Found at i:23059682 original size:40 final size:41
Alignment explanation
Indices: 23059638--23059714 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
23059628 GTCTTAGGTT
* *
23059638 TCTTT-GCGGCGATTTATCAAAAACGCCGCTAAATCCTTGA
1 TCTTTAGCGGCGATTAATAAAAAACGCCGCTAAATCCTTGA
*
23059678 TCTTTAGCGGCGCTTAATAAAAAACGCCGCTAAATCC
1 TCTTTAGCGGCGATTAATAAAAAACGCCGCTAAATCC
23059715 CCGCATGCCC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
40 5 0.15
41 28 0.85
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (41 bp):
TCTTTAGCGGCGATTAATAAAAAACGCCGCTAAATCCTTGA
Found at i:23060941 original size:21 final size:21
Alignment explanation
Indices: 23060916--23060970 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
23060906 ACAGCTGTGG
* *
23060916 CGGTGAGATTAGTTACTGTAG
1 CGGTGAGATTAGATACTGTAA
* *
23060937 TGGTGAGATTGGATACTGTAA
1 CGGTGAGATTAGATACTGTAA
23060958 CGGTGAGATTAGA
1 CGGTGAGATTAGA
23060971 AATAGCGGTG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.27, C:0.07, G:0.35, T:0.31
Consensus pattern (21 bp):
CGGTGAGATTAGATACTGTAA
Found at i:23061193 original size:11 final size:10
Alignment explanation
Indices: 23061152--23061195 Score: 52
Period size: 11 Copynumber: 4.2 Consensus size: 10
23061142 TTTTAATAAT
23061152 AAATAATTAA
1 AAATAATTAA
*
23061162 AAATGAATTAT
1 AAAT-AATTAA
*
23061173 AGATAATTAA
1 AAATAATTAA
23061183 AAATGAATTAA
1 AAAT-AATTAA
23061194 AA
1 AA
23061196 CTAGAGAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
10 12 0.43
11 16 0.57
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.30
Consensus pattern (10 bp):
AAATAATTAA
Found at i:23063296 original size:26 final size:26
Alignment explanation
Indices: 23063262--23063313 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
23063252 TAAGATATTG
23063262 AACATTACCATTGTTGAAATATCATT
1 AACATTACCATTGTTGAAATATCATT
*
23063288 AACATTACCGTTGTTGAAATATCATT
1 AACATTACCATTGTTGAAATATCATT
23063314 TCACAAAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (26 bp):
AACATTACCATTGTTGAAATATCATT
Found at i:23065514 original size:21 final size:22
Alignment explanation
Indices: 23065475--23065515 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
23065465 TGCCAAGCCA
*
23065475 TTTTAGGGTTTTTAATTAGTAG
1 TTTTAGGGTATTTAATTAGTAG
*
23065497 TTTTA-GGTATTTATTTAGT
1 TTTTAGGGTATTTAATTAGT
23065516 TTTAGATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.22, C:0.00, G:0.20, T:0.59
Consensus pattern (22 bp):
TTTTAGGGTATTTAATTAGTAG
Found at i:23069642 original size:21 final size:22
Alignment explanation
Indices: 23069601--23069642 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
23069591 ATCTTTATTA
23069601 TTCATATATACATAAGTACATT
1 TTCATATATACATAAGTACATT
* *
23069623 TTCATA-ATATATATGTACAT
1 TTCATATATACATAAGTACAT
23069643 ATATATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.43
Consensus pattern (22 bp):
TTCATATATACATAAGTACATT
Found at i:23070403 original size:108 final size:109
Alignment explanation
Indices: 23070148--23070470 Score: 393
Period size: 108 Copynumber: 2.9 Consensus size: 109
23070138 ACATTTTTCT
* * * * * *
23070148 AAATGAGGCAATATTTAGCATTTGGAAACTCGAAAAAAACGTGCCCTAATGTGCTGGGTTTCGAT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCG-AGAAAACGTGCCCTAATGTGCTGGGTTTCGA-
* *
23070213 TTTTCTTGTTCAACCAAATAGCTAAGA-ATCCTTTTTTTAAAAAAAAATTCA
64 TTTTCTCGTTCAACCAAATAGCCAA-ATATCC----TTT-AAAAAAAATTCA
23070264 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATT
* * *
23070329 TTCTCGTTCAACCAAATAGCCAAATATCCTTT-CAAAAATTTTA
66 TTCTCGTTCAACCAAATAGCCAAATATCCTTTAAAAAAAATTCA
* * *
23070372 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACATGCCCTAATGTGCTGTGTTTCGA-T
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATT
**
23070435 TTCTCGTTGGACCAAATAGCCAAATATCCTCTTAAA
66 TTCTCGTTCAACCAAATAGCCAAATATCCT-TTAAA
23070471 TTTTAATTCA
Statistics
Matches: 187, Mismatches: 17, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
106 29 0.16
107 27 0.14
108 43 0.23
110 3 0.02
113 1 0.01
114 27 0.14
115 30 0.16
116 27 0.14
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Consensus pattern (109 bp):
AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATT
TTCTCGTTCAACCAAATAGCCAAATATCCTTTAAAAAAAATTCA
Found at i:23074426 original size:11 final size:11
Alignment explanation
Indices: 23074406--23074435 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
23074396 CAATGGAGGC
23074406 AAAA-AAAATA
1 AAAACAAAATA
23074416 AAAACAAAATA
1 AAAACAAAATA
23074427 AAAACAAAA
1 AAAACAAAA
23074436 AATAATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.21
11 15 0.79
ACGTcount: A:0.87, C:0.07, G:0.00, T:0.07
Consensus pattern (11 bp):
AAAACAAAATA
Found at i:23074434 original size:26 final size:26
Alignment explanation
Indices: 23074405--23074458 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
23074395 GCAATGGAGG
*
23074405 CAAAAAA-AATAAAAACAAAATAAAAA
1 CAAAAAATAATAAAAA-AAAACAAAAA
*
23074431 CAAAAAATAATTAAAAAAAACAAAAA
1 CAAAAAATAATAAAAAAAAACAAAAA
23074457 CA
1 CA
23074459 CCTCTGCCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.81, C:0.09, G:0.00, T:0.09
Consensus pattern (26 bp):
CAAAAAATAATAAAAAAAAACAAAAA
Found at i:23074839 original size:18 final size:18
Alignment explanation
Indices: 23074805--23074889 Score: 93
Period size: 18 Copynumber: 4.6 Consensus size: 18
23074795 ATAAAATTTA
23074805 AAAAAAGAGAGAAAAAAGAAG
1 AAAAAAGA-AG-AAAAA-AAG
23074826 AAAAAAGAA-AAAAAGAAG
1 AAAAAAGAAGAAAAA-AAG
*
23074844 GAAAAAGAAGAAAAAAAG
1 AAAAAAGAAGAAAAAAAG
* *
23074862 AAAGAAGAAGAAGAAAAG
1 AAAAAAGAAGAAAAAAAG
23074880 AAAAAA-AAGA
1 AAAAAAGAAGA
23074890 GAGGCCAAGG
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
17 4 0.07
18 40 0.69
19 5 0.09
20 1 0.02
21 8 0.14
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (18 bp):
AAAAAAGAAGAAAAAAAG
Found at i:23074848 original size:28 final size:28
Alignment explanation
Indices: 23074804--23074889 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 28
23074794 AATAAAATTT
*
23074804 AAAAAAAGAGAGAAAAAAGAAGAAAAAAG
1 AAAAAAAGA-AGGAAAAAGAAGAAAAAAG
23074833 AAAAAAAGAAGGAAAAAGAAGAAAAAAAG
1 AAAAAAAGAAGGAAAAAGAAG-AAAAAAG
23074862 AAAGAAGAAGAA-G-AAAAGAA-AAAAAAG
1 AAA-AA-AAGAAGGAAAAAGAAGAAAAAAG
23074889 A
1 A
23074890 GAGGCCAAGG
Statistics
Matches: 53, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
27 8 0.15
28 11 0.21
29 26 0.49
30 3 0.06
31 5 0.09
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (28 bp):
AAAAAAAGAAGGAAAAAGAAGAAAAAAG
Found at i:23075012 original size:31 final size:31
Alignment explanation
Indices: 23074977--23075045 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
23074967 AAATTTTGGA
23074977 TCAAATTGGGGCATGAGGTGATCAGAGCAGC
1 TCAAATTGGGGCATGAGGTGATCAGAGCAGC
*
23075008 TCAAATTGGGGTATGAGGTGATCAGAGCAGC
1 TCAAATTGGGGCATGAGGTGATCAGAGCAGC
23075039 TCAAATT
1 TCAAATT
23075046 TTGATCAGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.30, C:0.14, G:0.32, T:0.23
Consensus pattern (31 bp):
TCAAATTGGGGCATGAGGTGATCAGAGCAGC
Found at i:23076375 original size:44 final size:44
Alignment explanation
Indices: 23076283--23076640 Score: 214
Period size: 44 Copynumber: 8.1 Consensus size: 44
23076273 GGAGCAGACT
* * * * *
23076283 GAAGATTGCAGATCCTATCACTCTAAGTAGTAGTGGAGTAGGTT
1 GAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGTAGATC
* * *
23076327 GAAGATTGCAGATTCTGTCACCCTGAGCAGTAGTGGAGCAGATC
1 GAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGTAGATC
** * * * * * *
23076371 GAAGA-TGGTGAATCTTATCTTCCC-AATACAGTAGAGAAGTAGATT
1 GAAGATTGCAGATTC-TATC-ACCCTAA-GCAGTAGTGGAGTAGATC
* * * * *
23076416 TAAGTCATT--TG-TCCTATCACCCTAAGTAGTAGTGGAGTAGGTC
1 GAAG--ATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGTAGATC
* *
23076459 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATC
1 GAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGTAGATC
** * * * * * *
23076503 GAAGA-TGGTGAATCTTATCTTCCC-AATACAGTAGAGAAGTAGATT
1 GAAGATTGCAGATTC-TATC-ACCCTAA-GCAGTAGTGGAGTAGATC
* * * * *
23076548 TAAGTCATT--TG-TCCTATCACCCTAAGTAGTAGTGGAGTAGGTC
1 GAAG--ATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGTAGATC
* *
23076591 GAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATC
1 GAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGTAGATC
23076635 GAAGAT
1 GAAGAT
23076641 GGTGAATCTT
Statistics
Matches: 231, Mismatches: 63, Indels: 40
0.69 0.19 0.12
Matches are distributed among these distances:
41 6 0.03
43 50 0.22
44 127 0.55
45 40 0.17
46 4 0.02
47 2 0.01
48 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (44 bp):
GAAGATTGCAGATTCTATCACCCTAAGCAGTAGTGGAGTAGATC
Found at i:23076445 original size:132 final size:132
Alignment explanation
Indices: 23076295--23076730 Score: 746
Period size: 132 Copynumber: 3.3 Consensus size: 132
23076285 AGATTGCAGA
* * *
23076295 TCCTATCACTCTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTGAGCAGTAG
1 TCCTATCACCCTAAGTAGTAGTGGAGTAGGTCGAAGATTGCAGATTCTGTCACCCTAAGCAGTAG
23076360 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAAGTAGATTTAAGTCATT
66 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAAGTAGATTTAAGTCATT
23076425 TG
131 TG
23076427 TCCTATCACCCTAAGTAGTAGTGGAGTAGGTCGAAGATTGCAGATTCTGTCACCCTAAGCAGTAG
1 TCCTATCACCCTAAGTAGTAGTGGAGTAGGTCGAAGATTGCAGATTCTGTCACCCTAAGCAGTAG
23076492 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAAGTAGATTTAAGTCATT
66 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAAGTAGATTTAAGTCATT
23076557 TG
131 TG
23076559 TCCTATCACCCTAAGTAGTAGTGGAGTAGGTCGAAGATTGCAGATTCTGTCACCCTAAGCAGTAG
1 TCCTATCACCCTAAGTAGTAGTGGAGTAGGTCGAAGATTGCAGATTCTGTCACCCTAAGCAGTAG
* * * * * **
23076624 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGGTTTAAACCATT
66 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAAGTAGATTTAAGTCATT
*
23076689 AG
131 TG
* * *
23076691 TCCTATCACCCTAAGCAGTAGTGGAATAGGTCAAAGATTG
1 TCCTATCACCCTAAGTAGTAGTGGAGTAGGTCGAAGATTG
23076731 TAGAGCAGAT
Statistics
Matches: 290, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 290 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (132 bp):
TCCTATCACCCTAAGTAGTAGTGGAGTAGGTCGAAGATTGCAGATTCTGTCACCCTAAGCAGTAG
TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAAGTAGATTTAAGTCATT
TG
Found at i:23078202 original size:21 final size:22
Alignment explanation
Indices: 23078161--23078202 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
23078151 ATCTTTATTA
23078161 TTCATATATACATAAGTACATT
1 TTCATATATACATAAGTACATT
* *
23078183 TTCATA-ATATATATGTACAT
1 TTCATATATACATAAGTACAT
23078203 ATATATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.43
Consensus pattern (22 bp):
TTCATATATACATAAGTACATT
Found at i:23078626 original size:44 final size:43
Alignment explanation
Indices: 23078539--23078632 Score: 104
Period size: 44 Copynumber: 2.1 Consensus size: 43
23078529 TGCTTGATGA
23078539 TCATTTATTTATTTGTATATCAATAATTTTAATTTTTTAGTTAT
1 TCATTTATTTATTTGTATATCAATAATTTT-ATTTTTTAGTTAT
* *
23078583 TTATTTATTTATTATTGTATAT-ACATGATTTT-TTTTATT-GTTAT
1 TCATTTATTTA-T-TTGTATATCA-ATAATTTTATTTT-TTAGTTAT
23078627 TCATTT
1 TCATTT
23078633 TTTTTGCTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
44 24 0.56
45 4 0.09
46 15 0.35
ACGTcount: A:0.27, C:0.04, G:0.05, T:0.64
Consensus pattern (43 bp):
TCATTTATTTATTTGTATATCAATAATTTTATTTTTTAGTTAT
Found at i:23085351 original size:29 final size:29
Alignment explanation
Indices: 23085293--23085351 Score: 68
Period size: 29 Copynumber: 2.0 Consensus size: 29
23085283 TTGTTCATTG
*
23085293 ATATTGATAAAAAATATTTAAATATTTAA
1 ATATTGATAAAAAATATTTAAATATGTAA
*
23085322 ATATT-ATAAAAAAATGCTTTAAAT-TGTAA
1 ATATTGAT-AAAAAAT-ATTTAAATATGTAA
23085351 A
1 A
23085352 AACTAGTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 2 0.08
29 17 0.65
30 7 0.27
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (29 bp):
ATATTGATAAAAAATATTTAAATATGTAA
Found at i:23085371 original size:29 final size:29
Alignment explanation
Indices: 23085299--23085371 Score: 71
Period size: 29 Copynumber: 2.5 Consensus size: 29
23085289 ATTGATATTG
* * *
23085299 ATAAAAAAT-ATTTAAATATTTAAATATT
1 ATAAAAAATCATTTAAATATGTAAAAACT
23085327 ATAAAAAAATGC-TTTAAAT-TGTAAAAACT
1 AT-AAAAAAT-CATTTAAATATGTAAAAACT
23085356 AGTAAAAAATCATTTA
1 A-TAAAAAATCATTTA
23085372 TTTTTTTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
28 3 0.08
29 26 0.70
30 8 0.22
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (29 bp):
ATAAAAAATCATTTAAATATGTAAAAACT
Found at i:23093293 original size:105 final size:105
Alignment explanation
Indices: 23093182--23093408 Score: 280
Period size: 105 Copynumber: 2.2 Consensus size: 105
23093172 ATTAATGCAT
* * * *
23093182 TATATGTGACAACATCAGGCTCAATGCCTTTCTTTCTCATTGTATCAACAATATCTTCAGCTT-T
1 TATATGTGACAACATCAGGCTCAATGCCTTGCTTTCGCATTGCATCAACAATATCTACAGCTTCT
23093246 AGAAACCATTCCCTC-T-TTGCAATGTGCATCAACCAATATAC
66 -GAAACCA--CCCTCTTCTTGCAATGTGCATCAACCAATATAC
* * * *
23093287 TGTATGTGACAACATTAGGTTCAATGCCTTGCTTTCGCATTGCATCAACAGTATCTACAGCTTCT
1 TATATGTGACAACATCAGGCTCAATGCCTTGCTTTCGCATTGCATCAACAATATCTACAGCTTCT
* * * *
23093352 GAAATCACCCTCTTCTTGCAATGTGCATCTATCAATATAT
66 GAAACCACCCTCTTCTTGCAATGTGCATCAACCAATATAC
* *
23093392 TATACGTGACAATATCA
1 TATATGTGACAACATCA
23093409 AGAGAAATAT
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
103 5 0.05
104 1 0.01
105 96 0.93
106 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.34
Consensus pattern (105 bp):
TATATGTGACAACATCAGGCTCAATGCCTTGCTTTCGCATTGCATCAACAATATCTACAGCTTCT
GAAACCACCCTCTTCTTGCAATGTGCATCAACCAATATAC
Found at i:23095695 original size:10 final size:10
Alignment explanation
Indices: 23095680--23095704 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
23095670 GTTCTTAATG
23095680 TTTTTCATAA
1 TTTTTCATAA
23095690 TTTTTCATAA
1 TTTTTCATAA
23095700 TTTTT
1 TTTTT
23095705 GAAAATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTTTCATAA
Found at i:23108543 original size:23 final size:23
Alignment explanation
Indices: 23108514--23108557 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
23108504 CAGCACAAAG
*
23108514 AAACAACAAAAAGAAAGAAATGA
1 AAACAACAAAAAGAAAAAAATGA
*
23108537 AAACAACAGAAAGAAAAAAAT
1 AAACAACAAAAAGAAAAAAAT
23108558 AACAGAATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.75, C:0.09, G:0.11, T:0.05
Consensus pattern (23 bp):
AAACAACAAAAAGAAAAAAATGA
Found at i:23108561 original size:17 final size:18
Alignment explanation
Indices: 23108525--23108564 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
23108515 AACAACAAAA
23108525 AGAAAGAAATGAAAACAAC
1 AGAAAGAAA-GAAAACAAC
*
23108544 AGAAAGAAA-AAAATAAC
1 AGAAAGAAAGAAAACAAC
23108561 AGAA
1 AGAA
23108565 TAGGGGAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 11 0.55
19 9 0.45
ACGTcount: A:0.72, C:0.07, G:0.15, T:0.05
Consensus pattern (18 bp):
AGAAAGAAAGAAAACAAC
Found at i:23109886 original size:37 final size:37
Alignment explanation
Indices: 23109836--23109913 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
23109826 TTTCAATCCC
23109836 TATGCATTACTTATTTAAATTAATATATGTATATCAT
1 TATGCATTACTTATTTAAATTAATATATGTATATCAT
23109873 TATGCATTACTTATTTAAATTAATATATGTATATCAT
1 TATGCATTACTTATTTAAATTAATATATGTATATCAT
23109910 TATG
1 TATG
23109914 TACCTTAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.49
Consensus pattern (37 bp):
TATGCATTACTTATTTAAATTAATATATGTATATCAT
Found at i:23111827 original size:131 final size:131
Alignment explanation
Indices: 23111621--23111914 Score: 365
Period size: 131 Copynumber: 2.2 Consensus size: 131
23111611 TATTGTTTAC
* * **
23111621 TTTATATATCATGAACAATCTTATTTGAGTTAGCTGATTTAATATCACTACTTCAAACAGCTTGT
1 TTTAT-TATCATGAACAATCTTATTTGAGTTAGCTGATTTAAGATCACTACTCCAAACAGCTCAT
** * * *
23111686 TGATTTAATATCGCAGTTGATATAGTTAAGGTTTGCTGATATGAAT-TCGCAACCTAAGTTCATT
65 TGATTTAATATCGCAACTGATATAGTTAAAGTTCGCTAAT-TGAATATCGCAACCTAAGTTCATT
23111750 CAA
129 CAA
* *
23111753 TTTATTATCATGAACAATCTTATTTGGGTTAGCTGATTTAAGATCGCTACTCCAAACAGCTCATT
1 TTTATTATCATGAACAATCTTATTTGAGTTAGCTGATTTAAGATCACTACTCCAAACAGCTCATT
* * * * *
23111818 GGTTTAATATCGCAACTGATATTGTTAAAGTTCGCTAATTTAATATTGCAACCTAAGTTCATTCG
66 GATTTAATATCGCAACTGATATAGTTAAAGTTCGCTAATTGAATATCGCAACCTAAGTTCATTCA
23111883 A
131 A
* * * * * *
23111884 CTCAATAACATGAACAATCTCATTTGTGTTA
1 TTTATTATCATGAACAATCTTATTTGAGTTA
23111915 CCTAATTTTC
Statistics
Matches: 139, Mismatches: 22, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
130 4 0.03
131 130 0.94
132 5 0.04
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (131 bp):
TTTATTATCATGAACAATCTTATTTGAGTTAGCTGATTTAAGATCACTACTCCAAACAGCTCATT
GATTTAATATCGCAACTGATATAGTTAAAGTTCGCTAATTGAATATCGCAACCTAAGTTCATTCA
A
Found at i:23118239 original size:19 final size:18
Alignment explanation
Indices: 23118195--23118236 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
23118185 AATAAACACC
*
23118195 AAAAATTATTTTAAAAAT
1 AAAAAATATTTTAAAAAT
23118213 AAAAAATATTTTAAAAAT
1 AAAAAATATTTTAAAAAT
23118231 AAAAAA
1 AAAAAA
23118237 ATAAAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAAAATATTTTAAAAAT
Found at i:23120399 original size:104 final size:104
Alignment explanation
Indices: 23120142--23120458 Score: 436
Period size: 104 Copynumber: 3.0 Consensus size: 104
23120132 TTATGACTTA
* * * * ** *
23120142 AGCTGGATTTTAGTAATTGATAATGGGTTAATGAAATGGGGTTATTGTTGATGGTTAAATTATGT
1 AGCTGGATTTTAGTAATTGCTAGTGGATTAATGAAATGGGGTTATTGTTGATTGTTAAACAATGG
* * *
23120207 AGGAATTTTGTGGGTTTACAGCTTAAAAAATTGGTGGTTTC
66 AGGAAATTTATGGGTTTACAGCTT--AAAATTGGTGGTTTT
* *
23120248 AGCTAGATTTTAGTAATTGCTAGTGGATTTATGAAATGGGGTTATTGTTGATTGTTAAACAATGG
1 AGCTGGATTTTAGTAATTGCTAGTGGATTAATGAAATGGGGTTATTGTTGATTGTTAAACAATGG
*
23120313 AGGAAATTTATGGGTTTATAGCTTAAAATTGGTGGTTTT
66 AGGAAATTTATGGGTTTACAGCTTAAAATTGGTGGTTTT
* * *
23120352 AGCTGGATTTTAGTATTTGCTAGTGGATTAATGAAATGGGGTGATTGTTGATTATTAAACAATGG
1 AGCTGGATTTTAGTAATTGCTAGTGGATTAATGAAATGGGGTTATTGTTGATTGTTAAACAATGG
* * *
23120417 AAGAAATTTATGGGTTTACAGCATAAAATTGGCGGCTTTT
66 AGGAAATTTATGGGTTTACAGCTTAAAATTGGTGG-TTTT
23120457 AG
1 AG
23120459 TTATTGCTAC
Statistics
Matches: 188, Mismatches: 22, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
104 105 0.56
105 6 0.03
106 77 0.41
ACGTcount: A:0.29, C:0.05, G:0.26, T:0.39
Consensus pattern (104 bp):
AGCTGGATTTTAGTAATTGCTAGTGGATTAATGAAATGGGGTTATTGTTGATTGTTAAACAATGG
AGGAAATTTATGGGTTTACAGCTTAAAATTGGTGGTTTT
Found at i:23122692 original size:33 final size:33
Alignment explanation
Indices: 23122650--23122714 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
23122640 TTTCGAGTGA
23122650 TTGGATCTAGATATTATAGATCAACTGAGACAG
1 TTGGATCTAGATATTATAGATCAACTGAGACAG
*
23122683 TTGGATCTAGATATTATAGATCAATTGAGACA
1 TTGGATCTAGATATTATAGATCAACTGAGACA
23122715 ATTCACCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.32
Consensus pattern (33 bp):
TTGGATCTAGATATTATAGATCAACTGAGACAG
Found at i:23123769 original size:27 final size:27
Alignment explanation
Indices: 23123736--23123808 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 27
23123726 TATGTCGAAT
*
23123736 TTGTTAGATATTGATTATGTTTTGAGC
1 TTGTTAGATATTGATTATGTTTTAAGC
23123763 TTGTTAGATATTGAATTTATTATGTTTTAAGC
1 TTGTTAGATATTG-----ATTATGTTTTAAGC
*
23123795 TTGTTGGATATTGA
1 TTGTTAGATATTGA
23123809 AATGATTGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
27 14 0.36
32 25 0.64
ACGTcount: A:0.25, C:0.03, G:0.21, T:0.52
Consensus pattern (27 bp):
TTGTTAGATATTGATTATGTTTTAAGC
Found at i:23123788 original size:32 final size:32
Alignment explanation
Indices: 23123749--23123809 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
23123739 TTAGATATTG
*
23123749 ATTATGTTTTGAGCTTGTTAGATATTGAATTT
1 ATTATGTTTTAAGCTTGTTAGATATTGAATTT
*
23123781 ATTATGTTTTAAGCTTGTTGGATATTGAA
1 ATTATGTTTTAAGCTTGTTAGATATTGAA
23123810 ATGATTGACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.26, C:0.03, G:0.20, T:0.51
Consensus pattern (32 bp):
ATTATGTTTTAAGCTTGTTAGATATTGAATTT
Found at i:23127839 original size:19 final size:20
Alignment explanation
Indices: 23127814--23127877 Score: 87
Period size: 19 Copynumber: 3.3 Consensus size: 20
23127804 ATCCAAACAC
23127814 CAGAAAAGTAAATCATTTTT
1 CAGAAAAGTAAATCATTTTT
23127834 -AGAAAAGTAAATCATTTTT
1 CAGAAAAGTAAATCATTTTT
* * *
23127853 CAGAAAA-AAAATTATTTTC
1 CAGAAAAGTAAATCATTTTT
23127872 CAGAAA
1 CAGAAA
23127878 TCATTTTCCG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
19 34 0.85
20 6 0.15
ACGTcount: A:0.50, C:0.09, G:0.09, T:0.31
Consensus pattern (20 bp):
CAGAAAAGTAAATCATTTTT
Found at i:23129155 original size:105 final size:105
Alignment explanation
Indices: 23128930--23129351 Score: 555
Period size: 105 Copynumber: 4.0 Consensus size: 105
23128920 TCCCTACTTG
* * ***
23128930 TATGTGACAACATTAGGCTCAATGCCTTGCTTTCTCATTGTGTCAACAATATCTGGTGCTTCA-A
1 TATGTGACAACATCAGGCTCAATGCCTTGCTTTCTCATCGTGTCAACAATATCTTCAGCTTCAGA
* * *
23128994 AACCATCCCCTTCTTGCAATGTGCATCAACCAATATACTA
66 AATCATTCCCTTCTTGCAATATGCATCAACCAATATACTA
* * * * *
23129034 TGA-GTGTCAACGTCAGGTTCAATACCTTGCTTTCTCATCGTGTCAACAATATCTTCAGCTTTAG
1 T-ATGTGACAACATCAGGCTCAATGCCTTGCTTTCTCATCGTGTCAACAATATCTTCAGCTTCAG
23129098 AAATCATTCCCTTCTTGCAATATGCATCAACCAATATACTA
65 AAATCATTCCCTTCTTGCAATATGCATCAACCAATATACTA
* * *
23129139 TATGTGACAACATCAGGCTCAATGCCTAGCTTTCTCATAC-CGTCAACAATATCTTCAGCTTTAG
1 TATGTGACAACATCAGGCTCAATGCCTTGCTTTCTCAT-CGTGTCAACAATATCTTCAGCTTCAG
23129203 AAATCATTCCCTTCTTGCAATATGCATCAACCAATATACTA
65 AAATCATTCCCTTCTTGCAATATGCATCAACCAATATACTA
* * ** * *
23129244 TATGTGACAACATCAGGCTCAATGCCTTGCTTTCTCATTGTGTTAACAATATCTAGAACTTCAAA
1 TATGTGACAACATCAGGCTCAATGCCTTGCTTTCTCATCGTGTCAACAATATCTTCAGCTTCAGA
* * * *
23129309 AATCATTCCCTCCTTG-AAGTGTGCATCAATCAATATATTA
66 AATCATTCCCTTCTTGCAA-TATGCATCAACCAATATACTA
23129349 TAT
1 TAT
23129352 ATAAAATTAT
Statistics
Matches: 280, Mismatches: 32, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
104 54 0.19
105 225 0.80
106 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (105 bp):
TATGTGACAACATCAGGCTCAATGCCTTGCTTTCTCATCGTGTCAACAATATCTTCAGCTTCAGA
AATCATTCCCTTCTTGCAATATGCATCAACCAATATACTA
Found at i:23142142 original size:19 final size:19
Alignment explanation
Indices: 23142105--23142144 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
23142095 ATAGTAGCAA
*
23142105 TAAAATAGTGAAATGACAG
1 TAAAATAGTGAAATAACAG
23142124 TAAAATAGTGACAA-AACAG
1 TAAAATAGTGA-AATAACAG
23142143 TA
1 TA
23142145 GTATTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 17 0.89
20 2 0.11
ACGTcount: A:0.55, C:0.07, G:0.17, T:0.20
Consensus pattern (19 bp):
TAAAATAGTGAAATAACAG
Found at i:23149985 original size:12 final size:12
Alignment explanation
Indices: 23149968--23149997 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
23149958 CCTCACATGC
23149968 TCGTGTGCTAGG
1 TCGTGTGCTAGG
23149980 TCGTGTGCTAGG
1 TCGTGTGCTAGG
*
23149992 CCGTGT
1 TCGTGT
23149998 AACTGCTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.20, G:0.40, T:0.33
Consensus pattern (12 bp):
TCGTGTGCTAGG
Found at i:23155994 original size:28 final size:28
Alignment explanation
Indices: 23155963--23156109 Score: 142
Period size: 28 Copynumber: 5.2 Consensus size: 28
23155953 AGGCTTATTC
23155963 TTTCATATTACGCCACAAAGACATTTCT
1 TTTCATATTACGCCACAAAGACATTTCT
* * * *
23155991 TTTCATA-AATCGTCACAAAGGCTTATTC-
1 TTTCATATTA-CGCCACAAAGACAT-TTCT
*
23156019 TTTCATATTACGCCACAAAGGCATTTCT
1 TTTCATATTACGCCACAAAGACATTTCT
* *
23156047 TTTCATGAAT-CGCCACAAAG-GATTAT-T
1 TTTCAT-ATTACGCCACAAAGACATT-TCT
*
23156074 CTTTCATATTATGCCACAAAGACATTTCT
1 -TTTCATATTACGCCACAAAGACATTTCT
23156103 TTTCATA
1 TTTCATA
23156110 GATTGCCACA
Statistics
Matches: 97, Mismatches: 12, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
27 10 0.10
28 77 0.79
29 10 0.10
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.37
Consensus pattern (28 bp):
TTTCATATTACGCCACAAAGACATTTCT
Found at i:23155994 original size:56 final size:56
Alignment explanation
Indices: 23155933--23156126 Score: 284
Period size: 56 Copynumber: 3.5 Consensus size: 56
23155923 CAAGGTTATC
*
23155933 CTTTTCATGAATCGCTACAGAGGCTTATTCTTTCATATTACGCCACAAAGACATTT
1 CTTTTCATGAATCGCTACAAAGGCTTATTCTTTCATATTACGCCACAAAGACATTT
* *
23155989 CTTTTCATAAATCG-TCACAAAGGCTTATTCTTTCATATTACGCCACAAAGGCATTT
1 CTTTTCATGAATCGCT-ACAAAGGCTTATTCTTTCATATTACGCCACAAAGACATTT
* * *
23156045 CTTTTCATGAATCGCCACAAAGGATTATTCTTTCATATTATGCCACAAAGACATTT
1 CTTTTCATGAATCGCTACAAAGGCTTATTCTTTCATATTACGCCACAAAGACATTT
* *
23156101 CTTTTCAT-AGATTGCCACAAAGGCTT
1 CTTTTCATGA-ATCGCTACAAAGGCTT
23156127 CCATTTCTGA
Statistics
Matches: 125, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
55 2 0.02
56 123 0.98
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.36
Consensus pattern (56 bp):
CTTTTCATGAATCGCTACAAAGGCTTATTCTTTCATATTACGCCACAAAGACATTT
Found at i:23166970 original size:39 final size:39
Alignment explanation
Indices: 23166927--23167098 Score: 220
Period size: 39 Copynumber: 4.4 Consensus size: 39
23166917 ATAGAAATAT
*
23166927 GGTGATTATTC-GAGCTATATGCCTAACAGGCTTTGTGCC
1 GGTGATTATTCAG-GCTATGTGCCTAACAGGCTTTGTGCC
* * *
23166966 GGTGATTATTCAGGCCATGTGCCTAGCAGGCTTTATGCC
1 GGTGATTATTCAGGCTATGTGCCTAACAGGCTTTGTGCC
* * * *
23167005 GGTGGTTATTCGGGCTATGTGCCTAGCAAGCTTTGTGCC
1 GGTGATTATTCAGGCTATGTGCCTAACAGGCTTTGTGCC
**
23167044 GGTGATTATTCAGGCTATGTGCCTAACAGGCTTTGTGTT
1 GGTGATTATTCAGGCTATGTGCCTAACAGGCTTTGTGCC
* *
23167083 GTTGATTATTCCGGCT
1 GGTGATTATTCAGGCT
23167099 TTGTACCGGT
Statistics
Matches: 115, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
39 114 0.99
40 1 0.01
ACGTcount: A:0.17, C:0.20, G:0.28, T:0.35
Consensus pattern (39 bp):
GGTGATTATTCAGGCTATGTGCCTAACAGGCTTTGTGCC
Found at i:23167136 original size:78 final size:78
Alignment explanation
Indices: 23167054--23167221 Score: 214
Period size: 78 Copynumber: 2.2 Consensus size: 78
23167044 GGTGATTATT
* * * * *
23167054 CAGGCTATGTGCCTAACAGGCTTTGTGTTGTTGATTATTCCGGCTTTGTACCGG-TGATTATTCA
1 CAGGCTATGTGCCTAACAAGCTTTATGCTGGTGATTATTCAGGCTTTGT-CCGGATGATTATTC-
*
23167118 GGCT-ATGTGCCTAG
64 GGCTCATATGCCTAG
* *
23167132 CAGGCTATGTGCCTAGCAAGCTTTATGCTGGTGATTATTCAGGCTTTGTGCGGATGATTATTCGG
1 CAGGCTATGTGCCTAACAAGCTTTATGCTGGTGATTATTCAGGCTTTGTCCGGATGATTATTCGG
*
23167197 GTCATATGCCTAG
66 CTCATATGCCTAG
*
23167210 CAGGCTTTGTGC
1 CAGGCTATGTGC
23167222 TGGTGATTAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
77 6 0.08
78 72 0.92
ACGTcount: A:0.17, C:0.19, G:0.28, T:0.36
Consensus pattern (78 bp):
CAGGCTATGTGCCTAACAAGCTTTATGCTGGTGATTATTCAGGCTTTGTCCGGATGATTATTCGG
CTCATATGCCTAG
Found at i:23167137 original size:16 final size:16
Alignment explanation
Indices: 23167116--23167149 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
23167106 GGTGATTATT
23167116 CAGGCTATGTGCCTAG
1 CAGGCTATGTGCCTAG
23167132 CAGGCTATGTGCCTAG
1 CAGGCTATGTGCCTAG
23167148 CA
1 CA
23167150 AGCTTTATGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (16 bp):
CAGGCTATGTGCCTAG
Found at i:23167214 original size:39 final size:39
Alignment explanation
Indices: 23167171--23167254 Score: 127
Period size: 39 Copynumber: 2.2 Consensus size: 39
23167161 GGTGATTATT
23167171 CAGGCTTTGTGC-GGATGATTATTCGGG-TCATATGCCTAG
1 CAGGCTTTGTGCTGG-TGATTATTCGGGCT-ATATGCCTAG
*
23167210 CAGGCTTTGTGCTGGTGATTATTCGGGCTATGTGCCTAG
1 CAGGCTTTGTGCTGGTGATTATTCGGGCTATATGCCTAG
23167249 CAGGCT
1 CAGGCT
23167255 ATATGCCGAT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
39 39 0.93
40 3 0.07
ACGTcount: A:0.15, C:0.19, G:0.32, T:0.33
Consensus pattern (39 bp):
CAGGCTTTGTGCTGGTGATTATTCGGGCTATATGCCTAG
Found at i:23175583 original size:25 final size:24
Alignment explanation
Indices: 23175563--23175623 Score: 95
Period size: 25 Copynumber: 2.5 Consensus size: 24
23175553 AATAAACACC
23175563 AAAAAATATTTTAAAAATAAAAAT
1 AAAAAATATTTTAAAAATAAAAAT
*
23175587 AAAATAATATTTTAAAATTAAAGAAT
1 AAAA-AATATTTTAAAAATAAA-AAT
23175613 AAAAAATATTT
1 AAAAAATATTT
23175624 ATTTATTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
24 4 0.12
25 23 0.68
26 7 0.21
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (24 bp):
AAAAAATATTTTAAAAATAAAAAT
Found at i:23177251 original size:7 final size:7
Alignment explanation
Indices: 23177239--23177271 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
23177229 TTATATATAT
23177239 AATACTA
1 AATACTA
23177246 AATACTA
1 AATACTA
23177253 AATACTA
1 AATACTA
23177260 AATACTA
1 AATACTA
23177267 AATAC
1 AATAC
23177272 CAATCGACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:23178440 original size:11 final size:11
Alignment explanation
Indices: 23178424--23178536 Score: 85
Period size: 11 Copynumber: 10.5 Consensus size: 11
23178414 AAATAGGGAT
23178424 TTGAGAGGAAA
1 TTGAGAGGAAA
*
23178435 TTGAGAGCAAA
1 TTGAGAGGAAA
**
23178446 TTGAGATTAAA
1 TTGAGAGGAAA
* *
23178457 -T-A-TGG-AT
1 TTGAGAGGAAA
23178464 TTGAGA-GAAA
1 TTGAGAGGAAA
23178474 TTTG-GAAGGAAA
1 -TTGAG-AGGAAA
*
23178486 TTGAGAGCAAA
1 TTGAGAGGAAA
*
23178497 TTGAGAGGAAC
1 TTGAGAGGAAA
23178508 TTGAGAGGAAA
1 TTGAGAGGAAA
*
23178519 TTGAGAGAATAA
1 TTGAGAGGA-AA
23178531 TTGAGA
1 TTGAGA
23178537 AAGGATTAAT
Statistics
Matches: 79, Mismatches: 14, Indels: 17
0.72 0.13 0.15
Matches are distributed among these distances:
7 1 0.01
8 1 0.01
9 3 0.04
10 3 0.04
11 58 0.73
12 13 0.16
ACGTcount: A:0.43, C:0.03, G:0.30, T:0.24
Consensus pattern (11 bp):
TTGAGAGGAAA
Found at i:23178487 original size:40 final size:40
Alignment explanation
Indices: 23178414--23178536 Score: 115
Period size: 40 Copynumber: 3.0 Consensus size: 40
23178404 AAATAATTAA
23178414 AAATAGGGATTTGAGAGGAAATTGAGAGCAAATTGAGATT
1 AAATAGGGATTTGAGAGGAAATTGAGAGCAAATTGAGATT
* * **
23178454 AAATATGGATTTGAGA-GAAATTTG-GAAGGAAATTGAGAGC
1 AAATAGGGATTTGAGAGGAAA-TTGAG-AGCAAATTGAGATT
* *
23178494 AAATTGAGAGGAACTTGAGAGGAAATTGAGAGAATAATTGAGA
1 AAA-T-AG-GG-ATTTGAGAGGAAATTGAGAGCA-AATTGAGA
23178537 AAGGATTAAT
Statistics
Matches: 67, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
39 5 0.07
40 32 0.48
41 1 0.01
42 1 0.01
43 2 0.03
44 13 0.19
45 13 0.19
ACGTcount: A:0.44, C:0.02, G:0.30, T:0.24
Consensus pattern (40 bp):
AAATAGGGATTTGAGAGGAAATTGAGAGCAAATTGAGATT
Found at i:23178501 original size:33 final size:34
Alignment explanation
Indices: 23178464--23178536 Score: 96
Period size: 33 Copynumber: 2.2 Consensus size: 34
23178454 AAATATGGAT
* *
23178464 TTGAGAGAAATTTG-GAAGGAAATTGAGAGCA-AA
1 TTGAGAGAAACTTGAG-AGGAAATTGAGAGAATAA
*
23178497 TTGAGAGGAACTTGAGAGGAAATTGAGAGAATAA
1 TTGAGAGAAACTTGAGAGGAAATTGAGAGAATAA
23178531 TTGAGA
1 TTGAGA
23178537 AAGGATTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
33 26 0.74
34 9 0.26
ACGTcount: A:0.44, C:0.03, G:0.32, T:0.22
Consensus pattern (34 bp):
TTGAGAGAAACTTGAGAGGAAATTGAGAGAATAA
Found at i:23179505 original size:153 final size:155
Alignment explanation
Indices: 23179296--23179608 Score: 495
Period size: 153 Copynumber: 2.0 Consensus size: 155
23179286 TAGAATACCC
* *
23179296 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGT-AA-GATTATTGCTATTGTTATTTAAATTTTAATAAGATTATTA
* * * * *
23179361 TTATCAATAATAAATATTTTAATCATATTTAAACATAAATATTATTGAACCCATTCTAATTAAAA
64 ATATCAATAATAAATAATTTAATCATATTTAAACATAAATATTATTAAACACATTATAATTAAAA
*
23179426 TATATAATTTCATAAAATTCTTAATAA
129 TATATAATTTAATAAAATTCTTAATAA
23179453 TTAGCAGAAATTTGTTTTGGT-A-ATTATTGCTATTGTTATTTAAATTTTAATAAGATTATTAAT
1 TTAGCAGAAATTTGTTTTGGTAAGATTATTGCTATTGTTATTTAAATTTTAATAAGATTATTAAT
* * *
23179516 ATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATA
66 ATCAATAATAAATAATTTAATCATATTTAAACATAAATATTATTAAACACATTATAATTAAAATA
23179581 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
23179606 TTA
1 TTA
23179609 ATATTCTTAT
Statistics
Matches: 145, Mismatches: 11, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
153 124 0.86
155 1 0.01
157 20 0.14
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (155 bp):
TTAGCAGAAATTTGTTTTGGTAAGATTATTGCTATTGTTATTTAAATTTTAATAAGATTATTAAT
ATCAATAATAAATAATTTAATCATATTTAAACATAAATATTATTAAACACATTATAATTAAAATA
TATAATTTAATAAAATTCTTAATAA
Found at i:23179579 original size:16 final size:16
Alignment explanation
Indices: 23179542--23179583 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
23179532 TTAATCATAT
*
23179542 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
23179558 TT-AAATATATTATAA
1 TTAAAATATATTATAA
23179573 TTAAAATATAT
1 TTAAAATATAT
23179584 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:23179590 original size:14 final size:15
Alignment explanation
Indices: 23179551--23179592 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
23179541 TTTAAACATA
*
23179551 ATTATTATTAAATAT
1 ATTATAATTAAATAT
23179566 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
23179580 A-TATAATTTAATA
1 ATTATAATTAAATA
23179593 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:23179681 original size:120 final size:121
Alignment explanation
Indices: 23179540--23179837 Score: 505
Period size: 120 Copynumber: 2.5 Consensus size: 121
23179530 ATTTAATCAT
*
23179540 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
*
23179605 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAAT-ATAA
66 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTAT-AAATGA-AA
23179662 A-TT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
23179725 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
66 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
* * *
23179781 ATTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
23179838 TAAAATAATT
Statistics
Matches: 169, Mismatches: 4, Indels: 8
0.93 0.02 0.04
Matches are distributed among these distances:
119 7 0.04
120 157 0.93
121 4 0.02
122 1 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.43
Consensus pattern (121 bp):
ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAATGAAA
Found at i:23179710 original size:14 final size:15
Alignment explanation
Indices: 23179661--23179712 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
23179651 GTAAAATATA
23179661 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
23179676 TATTAAATATATTAT
1 AATTAAATATATTAT
23179691 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
23179704 AATTTAATA
1 AATTAAATA
23179713 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:23179924 original size:24 final size:25
Alignment explanation
Indices: 23179878--23179925 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
23179868 TATGAATTTG
23179878 TATAATTTAAAATAATAATTATTACA
1 TATAATTTAAAAT-ATAATTATTACA
23179904 TATAATTTAATAAT-TAA-TATTA
1 TATAATTTAA-AATATAATTATTA
23179926 AATTTCATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 5 0.24
25 3 0.14
26 10 0.48
27 3 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
TATAATTTAAAATATAATTATTACA
Found at i:23179929 original size:92 final size:92
Alignment explanation
Indices: 23179833--23180061 Score: 220
Period size: 92 Copynumber: 2.5 Consensus size: 92
23179823 TGATTTAATA
* * *
23179833 AAATTT-AAAATAATT-ATAACTAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TA
1 AAATTTCAAAA-AATTCATAA-TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTA
*
23179895 ATTATTACATATAATTTAATAATTAATATT
64 A-TATTAAATATAATTTAATAATTAATATT
* * * * *
23179925 AAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAAT
1 AAATTTCAAAAAATTCATAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAAT
* *
23179990 ATTAAATATAA-TT-ATATAGTGATA-T
66 ATTAAATATAATTTAATA-ATTAATATT
* * *
23180015 ATAATTTCATAAAATTCTTAATAATAAAATGT-TCTTATATGAATTTA
1 A-AATTTCAAAAAATTCATAATAAT-AAAT-TATATTATATGAATTTA
23180062 CTAAAATCAA
Statistics
Matches: 118, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
90 5 0.04
91 29 0.25
92 75 0.64
93 9 0.08
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (92 bp):
AAATTTCAAAAAATTCATAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAAT
ATTAAATATAATTTAATAATTAATATT
Found at i:23181492 original size:12 final size:12
Alignment explanation
Indices: 23181475--23181508 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
23181465 CTAGATACAT
23181475 AAAATGAAACCC
1 AAAATGAAACCC
23181487 AAAATGAAACCC
1 AAAATGAAACCC
23181499 AAAATGAAAC
1 AAAATGAAAC
23181509 AACAAGGTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.62, C:0.21, G:0.09, T:0.09
Consensus pattern (12 bp):
AAAATGAAACCC
Found at i:23189255 original size:10 final size:9
Alignment explanation
Indices: 23189197--23189256 Score: 52
Period size: 10 Copynumber: 6.4 Consensus size: 9
23189187 GACTAAAGTG
23189197 ATTTTTATA
1 ATTTTTATA
*
23189206 ATCTTTA-A
1 ATTTTTATA
*
23189214 ATATATTTATT
1 AT-T-TTTATA
23189225 ATTTTT-TA
1 ATTTTTATA
23189233 ATTTTTATGA
1 ATTTTTAT-A
23189243 ATTTTTAATA
1 ATTTTT-ATA
23189253 ATTT
1 ATTT
23189257 ATTTACTTGA
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
8 10 0.24
9 10 0.24
10 17 0.41
11 4 0.10
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (9 bp):
ATTTTTATA
Found at i:23189984 original size:24 final size:24
Alignment explanation
Indices: 23189939--23189985 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
23189929 AAGTGATTTT
23189939 TTTTAATTTTTAAATATATTTATA
1 TTTTAATTTTTAAATATATTTATA
23189963 TTTTAAGTTTTCTAAA-AT-TTTAT
1 TTTTAA-TTTT-TAAATATATTTAT
23189986 TAATTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 11 0.52
25 6 0.29
26 4 0.19
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (24 bp):
TTTTAATTTTTAAATATATTTATA
Found at i:23189992 original size:25 final size:24
Alignment explanation
Indices: 23189940--23189992 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
23189930 AGTGATTTTT
*
23189940 TTTAATTTTTAAATATATTTATAT
1 TTTAATTTTTAAATATATTTATAA
23189964 TTTAAGTTTTCTAAA-AT-TTTATTAA
1 TTTAA-TTTT-TAAATATATTTA-TAA
23189989 TTTA
1 TTTA
23189993 TTTACTTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
24 9 0.36
25 12 0.48
26 4 0.16
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (24 bp):
TTTAATTTTTAAATATATTTATAA
Found at i:23191566 original size:12 final size:12
Alignment explanation
Indices: 23191549--23191573 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23191539 AATAAATCAT
23191549 ATATGTATATTA
1 ATATGTATATTA
23191561 ATATGTATATTA
1 ATATGTATATTA
23191573 A
1 A
23191574 CAGAAAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATATGTATATTA
Found at i:23191777 original size:24 final size:24
Alignment explanation
Indices: 23191750--23191798 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
23191740 ATTCACATAT
23191750 TTTAATAATTTTAAAAAAGTAAAA
1 TTTAATAATTTTAAAAAAGTAAAA
23191774 TTTAATAATTTTAAAAAAGTAAAA
1 TTTAATAATTTTAAAAAAGTAAAA
23191798 T
1 T
23191799 AATTTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (24 bp):
TTTAATAATTTTAAAAAAGTAAAA
Found at i:23191964 original size:21 final size:21
Alignment explanation
Indices: 23191916--23191971 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
23191906 CACCATTGTT
*
23191916 TCTAATCTCATCGCTACAGTA
1 TCTAATCTCACCGCTACAGTA
*
23191937 TCCAATCTCACCGCTACAGTAA
1 TCTAATCTCACCGCTACAGT-A
23191959 T-TAATCTCACCGC
1 TCTAATCTCACCGC
23191972 CACCGCTGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 29 0.94
22 2 0.06
ACGTcount: A:0.29, C:0.34, G:0.09, T:0.29
Consensus pattern (21 bp):
TCTAATCTCACCGCTACAGTA
Found at i:23194268 original size:15 final size:15
Alignment explanation
Indices: 23194227--23194268 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
23194217 AAATATTCAG
*
23194227 ATTCAATATTTAGAA
1 ATTCAATATTTAAAA
*
23194242 ATTTAATA-TTAAAA
1 ATTCAATATTTAAAA
*
23194256 ATTCAACATTTAA
1 ATTCAATATTTAA
23194269 TTTTTCATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.40
Consensus pattern (15 bp):
ATTCAATATTTAAAA
Found at i:23195060 original size:17 final size:18
Alignment explanation
Indices: 23195038--23195078 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
23195028 ATATGTTTTT
*
23195038 AAAATTTTATTAAA-TTA
1 AAAATTTTAATAAACTTA
23195055 AAAATTTTAATAAACTTTA
1 AAAATTTTAATAAAC-TTA
23195074 AAAAT
1 AAAAT
23195079 ACAATTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 13 0.62
19 8 0.38
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
AAAATTTTAATAAACTTA
Found at i:23195130 original size:15 final size:15
Alignment explanation
Indices: 23195112--23195152 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
23195102 TTTATATTAT
23195112 TTATTTTTAATATAA
1 TTATTTTTAATATAA
*
23195127 TTATTCTTT-TTATAA
1 TTATT-TTTAATATAA
23195142 TTATTTTTAAT
1 TTATTTTTAAT
23195153 TAGTAAAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 3 0.14
15 16 0.73
16 3 0.14
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATTTTTAATATAA
Found at i:23195365 original size:17 final size:19
Alignment explanation
Indices: 23195343--23195384 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
23195333 TCTATTAAAT
23195343 ATAATAAATATTTAA-TAA
1 ATAATAAATATTTAACTAA
*
23195361 A-AATAAGTATTTAACTAA
1 ATAATAAATATTTAACTAA
23195379 ATAATA
1 ATAATA
23195385 TTATTTGTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 12 0.57
18 5 0.24
19 4 0.19
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (19 bp):
ATAATAAATATTTAACTAA
Found at i:23198363 original size:40 final size:42
Alignment explanation
Indices: 23198288--23198407 Score: 119
Period size: 40 Copynumber: 2.9 Consensus size: 42
23198278 ACACTGTTCA
23198288 TGCCACGTCAGCAAATCGCGTCCTAGA-G-GGA-GCGATTTCCT-
1 TGCCACGTCAGCAAATCGCG--CT-GACGTGGACGCGATTTCCTG
23198329 T-CCACGTCAGCAAATCGCGCTGACGTGGACGCGATTTCCTG
1 TGCCACGTCAGCAAATCGCGCTGACGTGGACGCGATTTCCTG
* * * *
23198370 TGCGAAC-CCTG-ACATCGCGCTGACGTGGACGCGATTTC
1 TGC-CACGTCAGCAAATCGCGCTGACGTGGACGCGATTTC
23198408 GCGAAAAATG
Statistics
Matches: 69, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
37 2 0.03
38 3 0.04
39 3 0.04
40 28 0.41
41 28 0.41
42 3 0.04
43 2 0.03
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.22
Consensus pattern (42 bp):
TGCCACGTCAGCAAATCGCGCTGACGTGGACGCGATTTCCTG
Found at i:23198479 original size:30 final size:29
Alignment explanation
Indices: 23198411--23198479 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
23198401 CGATTTCGCG
23198411 AAAAAT-GGCCCATTTCGGTAAATAATTA
1 AAAAATCGGCCCATTTCGGTAAATAATTA
* *
23198439 AAAAACCGGCCCATTTCGGTAAAT-TTTGAA
1 AAAAATCGGCCCATTTCGGTAAATAATT--A
23198469 AAAAATCGGCC
1 AAAAATCGGCC
23198480 TTTTTTGGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.20
29 17 0.49
30 11 0.31
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.25
Consensus pattern (29 bp):
AAAAATCGGCCCATTTCGGTAAATAATTA
Found at i:23206446 original size:56 final size:58
Alignment explanation
Indices: 23206360--23206526 Score: 189
Period size: 56 Copynumber: 2.8 Consensus size: 58
23206350 TTGTTATTAA
* * * * *
23206360 ATTTTAATAGAATTATTACTAAATATAATTTAATAAAAAATAA-ATAT-TTTAATCAT
1 ATTTTAATATAATTATTATTAAATAAAATTTAATAAAAAATAATATATATTTAATAAC
*
23206416 ATTTTAACATAATTATTATTAAATAAAATTTAAT-AAAAATAATATATAATTTAATAAC
1 ATTTTAATATAATTATTATTAAATAAAATTTAATAAAAAATAATATAT-ATTTAATAAC
*
23206474 ATTCTTAATATAATTATTATTAAAATATGAA-TTAATAAAAATCATAATATATA
1 ATT-TTAATATAATTATTATT-AAATA-AAATTTAATAAAAA--ATAATATATA
23206527 ATATTAGAAA
Statistics
Matches: 94, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
55 8 0.09
56 34 0.36
58 10 0.11
59 16 0.17
60 10 0.11
61 6 0.06
62 1 0.01
63 9 0.10
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (58 bp):
ATTTTAATATAATTATTATTAAATAAAATTTAATAAAAAATAATATATATTTAATAAC
Found at i:23207649 original size:29 final size:27
Alignment explanation
Indices: 23207596--23207848 Score: 115
Period size: 28 Copynumber: 9.1 Consensus size: 27
23207586 GATTGTGTGT
* * *
23207596 CCCTTATTTT-AGATTTTATAGTTTTG
1 CCCTTATTTTCAGATTTTACAATTTTA
*
23207622 CCCTTATTTAATCAGATTTTACAATTTTT
1 CCCTTATTT--TCAGATTTTACAATTTTA
*
23207651 CCCTTATTTTTAGATTTTAC-ATTTTA
1 CCCTTATTTTCAGATTTTACAATTTTA
* * **
23207677 CCCCTATTTTTCAAATTTTACAAAGTT-
1 CCCTTA-TTTTCAGATTTTACAATTTTA
* * *
23207704 CCCTTTGTTTCTCAGATTTTATAGTTTT-
1 CCC-TTATTT-TCAGATTTTACAATTTTA
* * *
23207732 CCCTCTATTTTTTAGATTTTATAATTTTG
1 CCCT-TA-TTTTCAGATTTTACAATTTTA
* * *
23207761 CCTCGGTT-TCTT-AAATTTTACAATTTTC
1 CC-C--TTATTTTCAGATTTTACAATTTTA
* * * * *
23207789 CCCTAATTTTTAGATTCTATAGTTTT-
1 CCCTTATTTTCAGATTTTACAATTTTA
* *
23207815 CCCTTATTTTTTCAAAGTTTACAATTTTGA
1 CCCTTA--TTTTCAGATTTTACAATTTT-A
23207845 CCCT
1 CCCT
23207849 AAAGTTTATT
Statistics
Matches: 171, Mismatches: 37, Indels: 34
0.71 0.15 0.14
Matches are distributed among these distances:
25 1 0.01
26 27 0.16
27 41 0.24
28 65 0.38
29 30 0.18
30 5 0.03
31 1 0.01
32 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.07, T:0.53
Consensus pattern (27 bp):
CCCTTATTTTCAGATTTTACAATTTTA
Found at i:23207685 original size:55 final size:54
Alignment explanation
Indices: 23207595--23207699 Score: 140
Period size: 55 Copynumber: 1.9 Consensus size: 54
23207585 CGATTGTGTG
* * * *
23207595 TCCCTTATTTTAGATTTTATAGTTTTGCCCTTATTTAATCAGATTTTACAATTTT
1 TCCCTTATTTTAGATTTTACAGTTTTACCCCTATTT-ATCAAATTTTACAATTTT
*
23207650 TCCCTTATTTTTAGATTTTACA-TTTTACCCCTATTTTTCAAATTTTACAA
1 TCCCTTA-TTTTAGATTTTACAGTTTTACCCCTATTTATCAAATTTTACAA
23207700 AGTTCCCTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
54 12 0.27
55 19 0.43
56 13 0.30
ACGTcount: A:0.25, C:0.17, G:0.05, T:0.53
Consensus pattern (54 bp):
TCCCTTATTTTAGATTTTACAGTTTTACCCCTATTTATCAAATTTTACAATTTT
Found at i:23207751 original size:56 final size:56
Alignment explanation
Indices: 23207595--23207752 Score: 168
Period size: 56 Copynumber: 2.9 Consensus size: 56
23207585 CGATTGTGTG
* * **
23207595 TCCCTTA-TTTTAGATTTTATAGTTTTGCCCT-TATTTAATCAGATTTTACAATTTT
1 TCCCTTATTTTTAGATTTTATAGTTTTACCCTCTATTT-TTCAGATTTTACAATAGT
* *
23207650 TCCCTTATTTTTAGATTTTACA-TTTTACCC-CTATTTTTCAAATTTTACAA-AGT
1 TCCCTTATTTTTAGATTTTATAGTTTTACCCTCTATTTTTCAGATTTTACAATAGT
*
23207703 TCCCTT-TGTTTCTCAGATTTTATAGTTTT-CCCTCTATTTTTTAGATTTTA
1 TCCCTTAT-TTT-T-AGATTTTATAGTTTTACCCTCTATTTTTCAGATTTTA
23207753 TAATTTTGCC
Statistics
Matches: 87, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
52 1 0.01
53 10 0.11
54 13 0.15
55 31 0.36
56 32 0.37
ACGTcount: A:0.22, C:0.17, G:0.06, T:0.54
Consensus pattern (56 bp):
TCCCTTATTTTTAGATTTTATAGTTTTACCCTCTATTTTTCAGATTTTACAATAGT
Found at i:23207770 original size:56 final size:55
Alignment explanation
Indices: 23207710--23207842 Score: 140
Period size: 55 Copynumber: 2.4 Consensus size: 55
23207700 AGTTCCCTTT
* * * * *
23207710 GTTTCTCAGATTTTATAGTTTTCCCTCTATTTTTTAGATTTTATAATTTTGCCTCG
1 GTTTCTCAAATTTTACAATTTTCCC-CTAATTTTTAGATTCTATAATTTTGCCTCG
* * * **
23207766 GTTTCTTAAATTTTACAATTTTCCCCTAATTTTTAGATTCTATAGTTTTCCCTTA
1 GTTTCTCAAATTTTACAATTTTCCCCTAATTTTTAGATTCTATAATTTTGCCTCG
* * *
23207821 TTTTTTCAAAGTTTACAATTTT
1 GTTTCTCAAATTTTACAATTTT
23207843 GACCCTAAAG
Statistics
Matches: 63, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
55 42 0.67
56 21 0.33
ACGTcount: A:0.22, C:0.16, G:0.08, T:0.55
Consensus pattern (55 bp):
GTTTCTCAAATTTTACAATTTTCCCCTAATTTTTAGATTCTATAATTTTGCCTCG
Found at i:23208527 original size:133 final size:133
Alignment explanation
Indices: 23208285--23208533 Score: 338
Period size: 133 Copynumber: 1.9 Consensus size: 133
23208275 AAGCACTGTA
* * * * * * **
23208285 GCAGTGTTTATCCTTTAACTACAAATTTGGTGTACATCCACAACTTATCGATAGCTTTTACCTGC
1 GCAGTGTTTATCCTTTAACTAAAAAATTGCTATACATCCACAACTCATCGAAAAATTTTACCTGC
* * * *
23208350 AATAATGTTTTGCATTTACATCCTAGTGTCAAATTTTATCTGCGATATTTTGTTGTGTTCCCACA
66 AATAATGTTGTGCATCTACAGCCCAGTGTCAAATTTTATCTGCGATATTTTGTTGTGTTCCCACA
23208415 GTG
131 GTG
* *
23208418 GCAGTGTTTATCCTTTAACTAAAAAATTGCTATACATCCACAACTCATTGAAAAATTTTACTTGC
1 GCAGTGTTTATCCTTTAACTAAAAAATTGCTATACATCCACAACTCATCGAAAAATTTTACCTGC
* *
23208483 AATAATGTTGTGCATCTACAGCCCAGTGAT-AGATTTTATTTGCGATATTTT
66 AATAATGTTGTGCATCTACAGCCCAGTG-TCAAATTTTATCTGCGATATTTT
23208534 ACTGTGCACC
Statistics
Matches: 99, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
133 98 0.99
134 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.39
Consensus pattern (133 bp):
GCAGTGTTTATCCTTTAACTAAAAAATTGCTATACATCCACAACTCATCGAAAAATTTTACCTGC
AATAATGTTGTGCATCTACAGCCCAGTGTCAAATTTTATCTGCGATATTTTGTTGTGTTCCCACA
GTG
Found at i:23209199 original size:253 final size:253
Alignment explanation
Indices: 23208751--23209257 Score: 987
Period size: 253 Copynumber: 2.0 Consensus size: 253
23208741 GTGCATACAG
23208751 TCTGGATTTTCTGTGATGTCATATTTATACCTATATATAAATTGTTGAGTGAACTAAAATACCGA
1 TCTGGATTTTCTGTGATGTCATATTTATACCTATATATAAATTGTTGAGTGAACTAAAATACCGA
*
23208816 TATTCTGAAATTCCTATTATGATTTCTGAGATTCTATTGATGGTTAACCTGAAAAATCGATACTT
66 TATTCTGAAATTCCTATTATGATTTCTGAGATTCTATTGATGGTTAACCTAAAAAATCGATACTT
*
23208881 TGATTTGTCAGTTGATTATTATTATTCTATGTGTTATTATGACTTATCGAGTGTTTTGACTAGTT
131 TGATTTGTCAGTTGATTATTATTATTCTATGTGTTATTATGACTTATAGAGTGTTTTGACTAGTT
23208946 TTGCTTGTGATAGAACTCACCCTAAGCTTCACAGCTCACTCCCTTTTTAATTTCTATC
196 TTGCTTGTGATAGAACTCACCCTAAGCTTCACAGCTCACTCCCTTTTTAATTTCTATC
23209004 TCTGGATTTTCTGTGATGTCATATTTATACCTATATATAAATTGTTGAGTGAACTAAAATACCGA
1 TCTGGATTTTCTGTGATGTCATATTTATACCTATATATAAATTGTTGAGTGAACTAAAATACCGA
*
23209069 TATTCTGAAATTCCTATTATGATTTCTGAGATTCTATTGATGGTTAACCTAAAAAATTGATACTT
66 TATTCTGAAATTCCTATTATGATTTCTGAGATTCTATTGATGGTTAACCTAAAAAATCGATACTT
23209134 TGATTTGTCAGTTGATTATTATTATTCTATGTGTTATTATGACTTATAGAGTGTTTTGACTAGTT
131 TGATTTGTCAGTTGATTATTATTATTCTATGTGTTATTATGACTTATAGAGTGTTTTGACTAGTT
23209199 TTGCTTGTGATAGAACTCACCCTAAGCTTCACAGCTCACTCCCTTTTTAATTTCTATC
196 TTGCTTGTGATAGAACTCACCCTAAGCTTCACAGCTCACTCCCTTTTTAATTTCTATC
23209257 T
1 T
23209258 TTTTAGATAA
Statistics
Matches: 251, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
253 251 1.00
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.43
Consensus pattern (253 bp):
TCTGGATTTTCTGTGATGTCATATTTATACCTATATATAAATTGTTGAGTGAACTAAAATACCGA
TATTCTGAAATTCCTATTATGATTTCTGAGATTCTATTGATGGTTAACCTAAAAAATCGATACTT
TGATTTGTCAGTTGATTATTATTATTCTATGTGTTATTATGACTTATAGAGTGTTTTGACTAGTT
TTGCTTGTGATAGAACTCACCCTAAGCTTCACAGCTCACTCCCTTTTTAATTTCTATC
Found at i:23211128 original size:26 final size:26
Alignment explanation
Indices: 23211097--23211173 Score: 86
Period size: 27 Copynumber: 3.0 Consensus size: 26
23211087 CATGAATTTC
23211097 TCAAAATTTTACTAGGGGTAAAATTA
1 TCAAAATTTTACTAGGGGTAAAATTA
* *
23211123 TCAAAATTTTA-TTGGGAGATAAAATCA
1 TCAAAATTTTACTAGGG-G-TAAAATTA
* *
23211150 TCAAACTTTTACTA-GAGTAAAATT
1 TCAAAATTTTACTAGGGGTAAAATT
23211174 GGGATGAGAA
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
25 10 0.24
26 13 0.31
27 18 0.43
28 1 0.02
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (26 bp):
TCAAAATTTTACTAGGGGTAAAATTA
Found at i:23213299 original size:19 final size:19
Alignment explanation
Indices: 23213277--23213329 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
23213267 TTTTAAGGGT
23213277 ATACCAAAAAAATAAAGAA
1 ATACCAAAAAAATAAAGAA
* * *
23213296 ATACCAAAAATTATGATGAA
1 ATACCAAAAA-AATAAAGAA
*
23213316 TTACCAAAAAAATA
1 ATACCAAAAAAATA
23213330 TGAGTGGATA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.64, C:0.11, G:0.06, T:0.19
Consensus pattern (19 bp):
ATACCAAAAAAATAAAGAA
Found at i:23213346 original size:22 final size:22
Alignment explanation
Indices: 23213321--23213393 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
23213311 ATGAATTACC
23213321 AAAAAAATATGAGTGGATACGA
1 AAAAAAATATGAGTGGATACGA
* *
23213343 AAAAAAATAAGAGT--ATACCAA
1 AAAAAAATATGAGTGGATA-CGA
*
23213364 AAACAAAACATGAG-GGATTACGA
1 AAA-AAAATATGAGTGGA-TACGA
23213387 AAAAAAA
1 AAAAAAA
23213394 AGATGAGCAT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
20 3 0.07
21 5 0.12
22 25 0.61
23 6 0.15
24 2 0.05
ACGTcount: A:0.62, C:0.08, G:0.16, T:0.14
Consensus pattern (22 bp):
AAAAAAATATGAGTGGATACGA
Found at i:23216846 original size:13 final size:15
Alignment explanation
Indices: 23216815--23216846 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
23216805 TCATATATAA
23216815 TTTATTAATCAATAT
1 TTTATTAATCAATAT
23216830 TTTATTAAT-AA-AT
1 TTTATTAATCAATAT
23216843 TTTA
1 TTTA
23216847 CACTAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 2 0.12
15 9 0.53
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (15 bp):
TTTATTAATCAATAT
Found at i:23218196 original size:11 final size:11
Alignment explanation
Indices: 23218158--23218197 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
23218148 CATTTTCCAG
23218158 ATTTTGAAGTC
1 ATTTTGAAGTC
23218169 ATTTT-AA-T-
1 ATTTTGAAGTC
23218177 ATATTTGAAGTC
1 AT-TTTGAAGTC
23218189 ATTTTGAAG
1 ATTTTGAAG
23218198 GTAATTCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
8 2 0.08
9 4 0.16
10 4 0.16
11 13 0.52
12 2 0.08
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.47
Consensus pattern (11 bp):
ATTTTGAAGTC
Found at i:23218259 original size:22 final size:22
Alignment explanation
Indices: 23218203--23218262 Score: 111
Period size: 22 Copynumber: 2.7 Consensus size: 22
23218193 TGAAGGTAAT
*
23218203 TCATTTTCCAGACTTTGGCATG
1 TCATTTTCCAGATTTTGGCATG
23218225 TCATTTTCCAGATTTTGGCATG
1 TCATTTTCCAGATTTTGGCATG
23218247 TCATTTTCCAGATTTT
1 TCATTTTCCAGATTTT
23218263 ATTTTATTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.47
Consensus pattern (22 bp):
TCATTTTCCAGATTTTGGCATG
Found at i:23220787 original size:9 final size:9
Alignment explanation
Indices: 23220770--23220824 Score: 83
Period size: 9 Copynumber: 6.1 Consensus size: 9
23220760 TAAGTTTTCG
23220770 AATTCGAAT
1 AATTCGAAT
*
23220779 AACTCGAAT
1 AATTCGAAT
* *
23220788 AACTCAAAT
1 AATTCGAAT
23220797 AATTCGAAT
1 AATTCGAAT
23220806 AATTCGAAT
1 AATTCGAAT
23220815 AATTCGAAT
1 AATTCGAAT
23220824 A
1 A
23220825 TCAAATTATA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.29
Consensus pattern (9 bp):
AATTCGAAT
Found at i:23236424 original size:20 final size:22
Alignment explanation
Indices: 23236387--23236433 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
23236377 GCCATACAGC
*
23236387 TGTGTGCCTCCTTTCACATGAG
1 TGTGTGCCTCCTTCCACATGAG
*
23236409 TGTGTGCCT-C-TCCACATGGG
1 TGTGTGCCTCCTTCCACATGAG
23236429 TGTGT
1 TGTGT
23236434 TGACCCCCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 13 0.57
21 1 0.04
22 9 0.39
ACGTcount: A:0.11, C:0.26, G:0.28, T:0.36
Consensus pattern (22 bp):
TGTGTGCCTCCTTCCACATGAG
Found at i:23243755 original size:24 final size:24
Alignment explanation
Indices: 23243723--23243772 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
23243713 TTTTAAACAA
23243723 TTAATGAATATTACTATAAGATAT
1 TTAATGAATATTACTATAAGATAT
23243747 TTAATGAATATTACTATAAGATAT
1 TTAATGAATATTACTATAAGATAT
23243771 TT
1 TT
23243773 TTTGTACTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (24 bp):
TTAATGAATATTACTATAAGATAT
Found at i:23248212 original size:21 final size:21
Alignment explanation
Indices: 23248187--23248230 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
23248177 CAAGGTTTCT
*
23248187 TCCAGCTGCCAAGTGGCTTCC
1 TCCAGCTCCCAAGTGGCTTCC
23248208 TCCAGCTCCCAAGTGGCTTCC
1 TCCAGCTCCCAAGTGGCTTCC
23248229 TC
1 TC
23248231 AATACCATGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.41, G:0.20, T:0.25
Consensus pattern (21 bp):
TCCAGCTCCCAAGTGGCTTCC
Found at i:23250148 original size:207 final size:207
Alignment explanation
Indices: 23249793--23250207 Score: 683
Period size: 207 Copynumber: 2.0 Consensus size: 207
23249783 CAAGCTCTTA
*
23249793 TGATCAGTGCGTATATGGAACTTTTCTGAATAAAAGTACTGGTTTAGGATTTTTAGAGCAAAGGT
1 TGATCAGTGCATATATGGAACTTTTCTGAATAAAAGTACTGGTTTAGGATTTTTAGAGCAAAGGT
* * * *
23249858 AACAGCTACCAATTCTAGATTGGGCATCAGATAGTTCTTCTCGTGTGAATTTAATTGTCGAGAAG
66 AACAGCCACCAATTCTAGATCGGGCATCAGATAGTTCTTCTCATGTGAATTTAACTGTCGAGAAG
23249923 CATAAGCAATCACCTTACCTTCTTGCACCGAAATGCAACCTAATCCACTGAGCGAAGCATTACTA
131 CATAAGCAATCACCTTACCTTCTTGCACCGAAATGCAACCTAATCCACTGAGCGAAGCATTACTA
23249988 TAAACAACGAAT
196 TAAACAACGAAT
* *
23250000 TGATCAGTGCATATATGGAATTTTTCTGAATAAAAGTA-TTGTTTCCA-GATTTTTAGAGCAAAG
1 TGATCAGTGCATATATGGAACTTTTCTGAATAAAAGTACTGGTTT--AGGATTTTTAGAGCAAAG
* *
23250063 GTAACA-CCAGCCAATTCTAGATCGGGCGTTAGATAGTTCTTCTCATGTGAATTTAACTGTCGAG
64 GTAACAGCCA-CCAATTCTAGATCGGGCATCAGATAGTTCTTCTCATGTGAATTTAACTGTCGAG
* *
23250127 AAGCATAAGCAATCACCTTACCTTTTTGCACCGAAATGCAACCTAATCCACTGAGCGAATCATTA
128 AAGCATAAGCAATCACCTTACCTTCTTGCACCGAAATGCAACCTAATCCACTGAGCGAAGCATTA
23250192 CTATAAACAACGAAT
193 CTATAAACAACGAAT
23250207 T
1 T
23250208 CCTTTCCAGA
Statistics
Matches: 194, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
206 7 0.04
207 186 0.96
208 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (207 bp):
TGATCAGTGCATATATGGAACTTTTCTGAATAAAAGTACTGGTTTAGGATTTTTAGAGCAAAGGT
AACAGCCACCAATTCTAGATCGGGCATCAGATAGTTCTTCTCATGTGAATTTAACTGTCGAGAAG
CATAAGCAATCACCTTACCTTCTTGCACCGAAATGCAACCTAATCCACTGAGCGAAGCATTACTA
TAAACAACGAAT
Found at i:23254570 original size:22 final size:23
Alignment explanation
Indices: 23254534--23254578 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
23254524 CGAAAGAAGT
*
23254534 CTAAGAAAATGAAAAGAA-AATAA
1 CTAAAAAAATGAAAA-AATAATAA
23254557 CTAAAAAAAT-AAAAAATAATAA
1 CTAAAAAAATGAAAAAATAATAA
23254579 AAATAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 2 0.10
22 9 0.45
23 9 0.45
ACGTcount: A:0.73, C:0.04, G:0.07, T:0.16
Consensus pattern (23 bp):
CTAAAAAAATGAAAAAATAATAA
Done.