Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 79 of 205
Found at i:23480377 original size:12 final size:12
Alignment explanation
Indices: 23480356--23480402 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
23480346 TGAATTACAT
*
23480356 GGCCTGTCACAC
1 GGCCTATCACAC
23480368 GGCCTATCACAC
1 GGCCTATCACAC
*
23480380 GGCCTGTCACAC
1 GGCCTATCACAC
* *
23480392 AGCCTACCACA
1 GGCCTATCACA
23480403 TGACCTGGCA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.23, C:0.43, G:0.19, T:0.15
Consensus pattern (12 bp):
GGCCTATCACAC
Found at i:23480384 original size:24 final size:24
Alignment explanation
Indices: 23480356--23480416 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
23480346 TGAATTACAT
*
23480356 GGCCTGTCACACGGCCTATCACAC
1 GGCCTGTCACACGGCCTACCACAC
* *
23480380 GGCCTGTCACACAGCCTACCACAT
1 GGCCTGTCACACGGCCTACCACAC
* *
23480404 GACCTGGCACACG
1 GGCCTGTCACACG
23480417 ATCGTGTGGC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.23, C:0.41, G:0.21, T:0.15
Consensus pattern (24 bp):
GGCCTGTCACACGGCCTACCACAC
Found at i:23490345 original size:22 final size:22
Alignment explanation
Indices: 23490299--23490363 Score: 78
Period size: 22 Copynumber: 2.9 Consensus size: 22
23490289 TCTGTACTGG
23490299 ATTGCAAATAATTAAAATTTCA
1 ATTGCAAATAATTAAAATTTCA
*
23490321 ATTGCGAATAATTAAAATTAT-A
1 ATTGCAAATAATTAAAATT-TCA
* *
23490343 ATTGTAAATACATAAAAATTT
1 ATTGCAAATA-ATTAAAATTT
23490364 AACACAAAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
22 28 0.76
23 9 0.24
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37
Consensus pattern (22 bp):
ATTGCAAATAATTAAAATTTCA
Found at i:23490773 original size:20 final size:20
Alignment explanation
Indices: 23490735--23490774 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
23490725 TTTCTCAACC
* *
23490735 TCAAAATCTTCCATAAACAT
1 TCAAAAACTTCAATAAACAT
*
23490755 TCAAAAACTTCAATTAACAT
1 TCAAAAACTTCAATAAACAT
23490775 AAATGGTAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (20 bp):
TCAAAAACTTCAATAAACAT
Found at i:23502043 original size:22 final size:21
Alignment explanation
Indices: 23502005--23502054 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
23501995 TGAAGAATGT
*
23502005 AATTTTATGCTATTTTACATTA
1 AATTTTATGCTAATTTA-ATTA
23502027 AATTTT-TGCATAATTTAATT-
1 AATTTTATGC-TAATTTAATTA
23502047 -ATTTTATG
1 AATTTTATG
23502055 TGACATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
19 5 0.20
20 2 0.08
21 6 0.24
22 12 0.48
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (21 bp):
AATTTTATGCTAATTTAATTA
Found at i:23505805 original size:33 final size:33
Alignment explanation
Indices: 23505763--23505826 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
23505753 ATTCAAGTAA
23505763 ATCATCCCCATCAGTAGGAGATTCCAAAACCTC
1 ATCATCCCCATCAGTAGGAGATTCCAAAACCTC
23505796 ATCATCCCCATCAGTAGGAGATTCCAAAACC
1 ATCATCCCCATCAGTAGGAGATTCCAAAACC
23505827 CCTTCCACAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.34, C:0.33, G:0.12, T:0.20
Consensus pattern (33 bp):
ATCATCCCCATCAGTAGGAGATTCCAAAACCTC
Found at i:23506801 original size:8 final size:8
Alignment explanation
Indices: 23506788--23506828 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
23506778 ACAAAAAAAT
23506788 AAATATAA
1 AAATATAA
23506796 AAATATAA
1 AAATATAA
23506804 AAATA-AA
1 AAATATAA
23506811 TAAATATAGA
1 -AAATATA-A
23506821 AAAT-TAA
1 AAATATAA
23506828 A
1 A
23506829 GTGGAAGATG
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
7 4 0.13
8 20 0.67
9 5 0.17
10 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (8 bp):
AAATATAA
Found at i:23506812 original size:24 final size:23
Alignment explanation
Indices: 23506780--23506828 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 23
23506770 ATTCGAGAAC
23506780 AAAAAAATAAATATA-AAAATATA
1 AAAAAAATAAATATAGAAAAT-TA
23506803 AAAATAAATAAATATAGAAAATTA
1 AAAA-AAATAAATATAGAAAATTA
23506827 AA
1 AA
23506829 GTGGAAGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 4 0.17
24 15 0.62
25 5 0.21
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (23 bp):
AAAAAAATAAATATAGAAAATTA
Found at i:23513498 original size:18 final size:17
Alignment explanation
Indices: 23513475--23513531 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
23513465 GCCTAAAATG
* *
23513475 AATTTTAATCTTTTTTTT
1 AATTTTAAT-TTATTTTC
23513493 AATTTTGAATTTATTTTC
1 AATTTT-AATTTATTTTC
* *
23513511 AATTTTATTTTTATGTTC
1 AATTTTA-ATTTATTTTC
23513529 AAT
1 AAT
23513532 AAGAAGGTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
17 1 0.03
18 29 0.88
19 3 0.09
ACGTcount: A:0.26, C:0.05, G:0.04, T:0.65
Consensus pattern (17 bp):
AATTTTAATTTATTTTC
Found at i:23516300 original size:211 final size:211
Alignment explanation
Indices: 23515936--23516406 Score: 843
Period size: 211 Copynumber: 2.2 Consensus size: 211
23515926 GTGGGGCCAG
* * * **
23515936 GCCGTGTGCCTCACACAACTGAGACACACGTTTGTGTCTCAGGCCGTGTAACATTTGAACTAGGG
1 GCCGTGTGCCACACACGACTGAGTCACACGTCCGTGTCTCAGGCCGTGTAACATTTGAACTAGGG
* *
23516001 ACACACGACCATGTCCCTGCTCGTGTCCTTACCCGTGTAACTCTAGAAGTAGGGTCACATGCCCA
66 ACACACGACCATGTCCCTGCTCGTGTCCTCACCCGTGTAACTCTAAAAGTAGGGTCACATGCCCA
23516066 CGTGCTAAGCCATGTGTTAGGCCATGTAACTTACTAACTACCATAAAAAGGAACCCTTAAATGAC
131 CGTGCTAAGCCATGTGTTAGGCCATGTAACTTACTAACTACCATAAAAAGGAACCCTTAAATGAC
23516131 ACAACCGTGTCACCAA
196 ACAACCGTGTCACCAA
* *
23516147 GCCGTGTGCCACACACGGCTGAGTCACACGCCCGTGTCTCAGGCCGTGTAACATTTGAACTAGGG
1 GCCGTGTGCCACACACGACTGAGTCACACGTCCGTGTCTCAGGCCGTGTAACATTTGAACTAGGG
*
23516212 ACACACGACCATGTCCCTGCTCGTGTCCTCACCCGTGTAACTCTAAAAGTAGGGTCACATGCCCG
66 ACACACGACCATGTCCCTGCTCGTGTCCTCACCCGTGTAACTCTAAAAGTAGGGTCACATGCCCA
23516277 CGTGCTAAGCCATGTGTTAGGCCATGTAACTTACTAACTACCATAAAAAGGAACCCTTAAATGAC
131 CGTGCTAAGCCATGTGTTAGGCCATGTAACTTACTAACTACCATAAAAAGGAACCCTTAAATGAC
23516342 ACAACCGTGTCACCAA
196 ACAACCGTGTCACCAA
*
23516358 GTCGTGTGCCACACACGACTGAGTCACACGTCCGTGTCTCAGGCCGTGT
1 GCCGTGTGCCACACACGACTGAGTCACACGTCCGTGTCTCAGGCCGTGT
23516407 GGACCTAAAT
Statistics
Matches: 247, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
211 247 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (211 bp):
GCCGTGTGCCACACACGACTGAGTCACACGTCCGTGTCTCAGGCCGTGTAACATTTGAACTAGGG
ACACACGACCATGTCCCTGCTCGTGTCCTCACCCGTGTAACTCTAAAAGTAGGGTCACATGCCCA
CGTGCTAAGCCATGTGTTAGGCCATGTAACTTACTAACTACCATAAAAAGGAACCCTTAAATGAC
ACAACCGTGTCACCAA
Found at i:23516889 original size:92 final size:92
Alignment explanation
Indices: 23516727--23516925 Score: 335
Period size: 92 Copynumber: 2.2 Consensus size: 92
23516717 GCATCGCAAG
*
23516727 TTAACCAAAATGACACAATCTAGCAAGGTATCAAATGGTACCAAGCCAAGATAACATCCATAACT
1 TTAA-CAAAATGACACAATCTAGCAAGGTATCAAATGGTACCAAACCAAGATAACATCCATAACT
*
23516792 TATACAAGCCAATTCACCAACTAACTAT
65 TATACAAGCCAATTCACCAACTAACCAT
* * * *
23516820 TTAACAAAATGACACCATTTAGCAAGGTATCAAATGGTACTAAACCAAGATAACATCTATAACTT
1 TTAACAAAATGACACAATCTAGCAAGGTATCAAATGGTACCAAACCAAGATAACATCCATAACTT
23516885 ATACAAGCCAATTCACCAACTAACCAT
66 ATACAAGCCAATTCACCAACTAACCAT
23516912 TTAACAAAATGACA
1 TTAACAAAATGACA
23516926 TTACAATTCA
Statistics
Matches: 100, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
92 96 0.96
93 4 0.04
ACGTcount: A:0.45, C:0.23, G:0.09, T:0.23
Consensus pattern (92 bp):
TTAACAAAATGACACAATCTAGCAAGGTATCAAATGGTACCAAACCAAGATAACATCCATAACTT
ATACAAGCCAATTCACCAACTAACCAT
Found at i:23522003 original size:12 final size:12
Alignment explanation
Indices: 23521986--23522011 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23521976 TTCATTCAGA
23521986 TTTCACTATAAC
1 TTTCACTATAAC
23521998 TTTCACTATAAC
1 TTTCACTATAAC
23522010 TT
1 TT
23522012 ATGTTCCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (12 bp):
TTTCACTATAAC
Found at i:23525241 original size:16 final size:19
Alignment explanation
Indices: 23525198--23525236 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
23525188 CAAAAACCTT
*
23525198 TTCTTAAAATTTTTGTATA
1 TTCTTAAAATTTATGTATA
23525217 TTCTTAAAATTTAT-TATA
1 TTCTTAAAATTTATGTATA
23525235 TT
1 TT
23525237 TAAAAAAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (19 bp):
TTCTTAAAATTTATGTATA
Found at i:23533496 original size:12 final size:12
Alignment explanation
Indices: 23533479--23533507 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
23533469 ACATGCCTAC
23533479 ACATGTATATCT
1 ACATGTATATCT
23533491 ACATGTATATCT
1 ACATGTATATCT
23533503 ACATG
1 ACATG
23533508 GAGGAGAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.38
Consensus pattern (12 bp):
ACATGTATATCT
Found at i:23540024 original size:25 final size:25
Alignment explanation
Indices: 23539995--23540048 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
23539985 AATAGTTTTA
*
23539995 TAAACCATATTAAGAAGAATTATTT
1 TAAACCATATTAAGAAGAACTATTT
*
23540020 TAAACCATATTAAGAGGAACTATTT
1 TAAACCATATTAAGAAGAACTATTT
23540045 TAAA
1 TAAA
23540049 TTGTAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.33
Consensus pattern (25 bp):
TAAACCATATTAAGAAGAACTATTT
Found at i:23545219 original size:21 final size:22
Alignment explanation
Indices: 23545135--23545219 Score: 77
Period size: 21 Copynumber: 3.9 Consensus size: 22
23545125 ATTAAAGCTT
*
23545135 CTAATACGGTGTAGGTAAACCA
1 CTAATACGGTGTAGATAAACCA
*
23545157 CTAAT-CGGTGTAGATAAA-AA
1 CTAATACGGTGTAGATAAACCA
* * *
23545177 TTGCTAATACAGTATGGATAAACCA
1 ---CTAATACGGTGTAGATAAACCA
23545202 CTAA-ACGGTGTAGATAAA
1 CTAATACGGTGTAGATAAA
23545220 AGTTGTTAAT
Statistics
Matches: 49, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
20 1 0.02
21 23 0.47
22 9 0.18
23 5 0.10
24 10 0.20
25 1 0.02
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.25
Consensus pattern (22 bp):
CTAATACGGTGTAGATAAACCA
Found at i:23545343 original size:34 final size:34
Alignment explanation
Indices: 23545305--23545385 Score: 108
Period size: 34 Copynumber: 2.4 Consensus size: 34
23545295 AGTATTTAAT
* *
23545305 TATGCTTTTAACAAAACAATATAGTAGCAATCAA
1 TATGCTTATAACAAAACAATACAGTAGCAATCAA
*** *
23545339 TATGCTTATAACAGTTCAATACAGTAGCAATTAA
1 TATGCTTATAACAAAACAATACAGTAGCAATCAA
23545373 TATGCTTATAACA
1 TATGCTTATAACA
23545386 GTTCAACTCA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (34 bp):
TATGCTTATAACAAAACAATACAGTAGCAATCAA
Found at i:23545386 original size:34 final size:34
Alignment explanation
Indices: 23545321--23545391 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
23545311 TTTAACAAAA
*
23545321 CAATATAGTAGCAATCAATATGCTTATAACAGTT
1 CAATACAGTAGCAATCAATATGCTTATAACAGTT
*
23545355 CAATACAGTAGCAATTAATATGCTTATAACAGTT
1 CAATACAGTAGCAATCAATATGCTTATAACAGTT
23545389 CAA
1 CAA
23545392 CTCAATAGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.31
Consensus pattern (34 bp):
CAATACAGTAGCAATCAATATGCTTATAACAGTT
Found at i:23545401 original size:34 final size:34
Alignment explanation
Indices: 23545329--23545402 Score: 114
Period size: 34 Copynumber: 2.2 Consensus size: 34
23545319 AACAATATAG
*
23545329 TAGCAATCAATATGCTTATAACAGTTCAATACAG
1 TAGCAATCAATATGCTTATAACAGTTCAATACAA
*
23545363 TAGCAATTAATATGCTTATAACAGTTCAACT-CAA
1 TAGCAATCAATATGCTTATAACAGTTCAA-TACAA
23545397 TAGCAA
1 TAGCAA
23545403 AAGTCGTGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
34 36 0.97
35 1 0.03
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.30
Consensus pattern (34 bp):
TAGCAATCAATATGCTTATAACAGTTCAATACAA
Found at i:23550051 original size:15 final size:15
Alignment explanation
Indices: 23550033--23550090 Score: 80
Period size: 16 Copynumber: 3.7 Consensus size: 15
23550023 CATAATTATT
23550033 ATTAAATATATTTTA
1 ATTAAATATATTTTA
23550048 ATTAAAATATATTTTA
1 ATT-AAATATATTTTA
*
23550064 ATTAAATATAATTTA
1 ATTAAATATATTTTA
*
23550079 ATAATAATATAT
1 ATTA-AATATAT
23550091 AATTTCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
15 17 0.45
16 21 0.55
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTAAATATATTTTA
Found at i:23550092 original size:18 final size:18
Alignment explanation
Indices: 23550038--23550100 Score: 57
Period size: 18 Copynumber: 3.8 Consensus size: 18
23550028 TTATTATTAA
*
23550038 ATATATTTTAATTAA-AAT
1 ATATAATTTAA-TAATAAT
23550056 ATAT--TTTAAT--TAA-
1 ATATAATTTAATAATAAT
23550069 ATATAATTTAATAATAAT
1 ATATAATTTAATAATAAT
*
23550087 ATATAATTTCATAA
1 ATATAATTTAATAA
23550101 AATTCTTGAT
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 4 0.11
14 2 0.05
15 7 0.18
16 5 0.13
17 3 0.08
18 17 0.45
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
ATATAATTTAATAATAAT
Found at i:23550117 original size:47 final size:46
Alignment explanation
Indices: 23550066--23550210 Score: 156
Period size: 47 Copynumber: 3.2 Consensus size: 46
23550056 ATATTTTAAT
*
23550066 TAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAA
1 TAAATATAATTTAATAAT-ATATATAATTTCATAAAATTCTTAATAA
* * ** *
23550113 TAAAT-T-TTCTTATATGAATTTATATAA-TT--TAAAATAATTAATAT
1 TAAATATAAT-TTA-AT-AATATATATAATTTCATAAAATTCTTAATAA
23550157 TAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAA
1 TAAATATAATTTAATAAT-ATATATAATTTCATAAAATTCTTAATAA
23550204 TAAATAT
1 TAAATAT
23550211 TCTTATATAA
Statistics
Matches: 78, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
43 3 0.04
44 25 0.32
45 7 0.09
46 7 0.09
47 33 0.42
48 3 0.04
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (46 bp):
TAAATATAATTTAATAATATATATAATTTCATAAAATTCTTAATAA
Found at i:23550181 original size:44 final size:43
Alignment explanation
Indices: 23550064--23550186 Score: 106
Period size: 44 Copynumber: 2.7 Consensus size: 43
23550054 ATATATTTTA
** *
23550064 ATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTGAT
1 ATTAAATATAATTTAATAAT-ATATATAA-TT--TAAAATAATTAAT
* * *
23550111 AATAAAT-T-TTCTTATATGAATTTATATAATTTAAAATAATTAAT
1 ATTAAATATAAT-TTA-AT-AATATATATAATTTAAAATAATTAAT
23550155 ATTAAATATAATTTAATAATGATATATAATTT
1 ATTAAATATAATTTAATAAT-ATATATAATTT
23550187 CATAAAATTC
Statistics
Matches: 61, Mismatches: 9, Indels: 15
0.72 0.11 0.18
Matches are distributed among these distances:
43 3 0.05
44 28 0.46
45 5 0.08
46 7 0.11
47 15 0.25
48 3 0.05
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (43 bp):
ATTAAATATAATTTAATAATATATATAATTTAAAATAATTAAT
Found at i:23550214 original size:16 final size:16
Alignment explanation
Indices: 23550188--23550221 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
23550178 ATATAATTTC
23550188 ATAAAATTCTTA-ATA
1 ATAAAATTCTTATATA
23550203 ATAAATATTCTTATATA
1 ATAAA-ATTCTTATATA
23550220 AT
1 AT
23550222 TTACTAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 7 0.41
17 5 0.29
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (16 bp):
ATAAAATTCTTATATA
Found at i:23550568 original size:66 final size:66
Alignment explanation
Indices: 23550462--23550592 Score: 226
Period size: 66 Copynumber: 2.0 Consensus size: 66
23550452 CGCAAATGTG
* *
23550462 ATTTGAGTTCAAATTAGATTCATAGTAAGCTCAAATTTTTATTAATGCCAATGCCAACACTACCA
1 ATTTGAGTTCAAATTAGACTCATAGTAAGCTCAAACTTTTATTAATGCCAATGCCAACACTACCA
23550527 C
66 C
* *
23550528 ATTTGGGTTCAAATTATACTCATAGTAAGCTCAAACTTTTATTAATGCCAATGCCAACACTACCA
1 ATTTGAGTTCAAATTAGACTCATAGTAAGCTCAAACTTTTATTAATGCCAATGCCAACACTACCA
23550593 AAACCTTTTG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.33
Consensus pattern (66 bp):
ATTTGAGTTCAAATTAGACTCATAGTAAGCTCAAACTTTTATTAATGCCAATGCCAACACTACCA
C
Found at i:23556970 original size:14 final size:15
Alignment explanation
Indices: 23556951--23556987 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
23556941 AACGAAAGAT
23556951 AAAAGAAGGAAAAA-
1 AAAAGAAGGAAAAAC
*
23556965 AAAAG-AGAAAAAAC
1 AAAAGAAGGAAAAAC
23556979 AAAAGAAGG
1 AAAAGAAGG
23556988 GGAACGAGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
13 7 0.37
14 10 0.53
15 2 0.11
ACGTcount: A:0.76, C:0.03, G:0.22, T:0.00
Consensus pattern (15 bp):
AAAAGAAGGAAAAAC
Found at i:23560565 original size:47 final size:48
Alignment explanation
Indices: 23560514--23560625 Score: 127
Period size: 47 Copynumber: 2.4 Consensus size: 48
23560504 TTATCAGCTT
* * * *
23560514 GACCAATTGTTTATCCATAATGTATCCTAGTCGGTAGTT-ATCTACTC
1 GACCAATGGTTTATCCACAACGTATCCTAGTCGATAGTTCATCTACTC
* * *
23560561 GACCAGTGGTTTATCCACAACGTATTCTAGTCGATAGTTCATTTACTC
1 GACCAATGGTTTATCCACAACGTATCCTAGTCGATAGTTCATCTACTC
* * *
23560609 GACTAGTGGTTCATCCA
1 GACCAATGGTTTATCCA
23560626 TAACATGTTA
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
47 33 0.60
48 22 0.40
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (48 bp):
GACCAATGGTTTATCCACAACGTATCCTAGTCGATAGTTCATCTACTC
Found at i:23560625 original size:48 final size:47
Alignment explanation
Indices: 23560526--23560625 Score: 128
Period size: 47 Copynumber: 2.1 Consensus size: 47
23560516 CCAATTGTTT
* * * *
23560526 ATCCATAATGTATCCTAGTCGGTAGTTATCTACTCGACCAGTGGTTT
1 ATCCACAACGTATCCTAGTCGATAGTTATCTACTCGACCAGTGGTTC
* * *
23560573 ATCCACAACGTATTCTAGTCGATAGTTCATTTACTCGACTAGTGGTTC
1 ATCCACAACGTATCCTAGTCGATAGTT-ATCTACTCGACCAGTGGTTC
23560621 ATCCA
1 ATCCA
23560626 TAACATGTTA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
47 23 0.51
48 22 0.49
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (47 bp):
ATCCACAACGTATCCTAGTCGATAGTTATCTACTCGACCAGTGGTTC
Found at i:23564417 original size:3 final size:3
Alignment explanation
Indices: 23564409--23564439 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
23564399 ATCATCGTTG
23564409 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
23564440 GCTAAAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:23568198 original size:46 final size:44
Alignment explanation
Indices: 23568131--23568216 Score: 109
Period size: 46 Copynumber: 1.9 Consensus size: 44
23568121 GAATAGAGAC
* * * *
23568131 GTAATGGAATAGATGCGTAATAGGTAATACTTTTGTTTGGTTCGCT
1 GTAATAGAATAGAAGAGTAATA-GT-ATACTTGTGTTTGGTTCGCT
*
23568177 GTAATAGAATAGAAGAGTAATAGTATTCTTGTGTTTGGTT
1 GTAATAGAATAGAAGAGTAATAGTATACTTGTGTTTGGTT
23568217 GAATGGAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 14 0.40
45 2 0.06
46 19 0.54
ACGTcount: A:0.29, C:0.06, G:0.26, T:0.40
Consensus pattern (44 bp):
GTAATAGAATAGAAGAGTAATAGTATACTTGTGTTTGGTTCGCT
Found at i:23568513 original size:120 final size:120
Alignment explanation
Indices: 23568360--23568961 Score: 1037
Period size: 120 Copynumber: 5.0 Consensus size: 120
23568350 TAATTTAATA
* * * * *
23568360 ATAATTTAAAATAACTATTGTTAAATAT-TATTTAA-TAAAGATATATAATTTAATAAAATTCTT
1 ATAATTTGAAATAATTATTATTAAATATAT-TTTAATTAAA-ATATATAATCTAATAAAATTATT
*
23568423 AATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAAT
64 AATAATAAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAAT
* * * * *
23568480 ATAATTTGAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTTTTAG
1 ATAATTTGAAATAATTATTATTAAATATATTTTAATTAAAATATATAATCTAATAAAATTATTAA
* *
23568545 TATTAAATATTCATATATGAATTTACTAAAATCATAATATATGATACTATAAAAT
66 TAATAAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAAT
23568600 ATAATTTGAAATAATTATTATTAAATATATTTTAATTAAAATATATAATCTAATAAAATTATTAA
1 ATAATTTGAAATAATTATTATTAAATATATTTTAATTAAAATATATAATCTAATAAAATTATTAA
*
23568665 TAATAAATATTCTTATATGAATTTACTAAAATCACAATATATGATACTATAAAAT
66 TAATAAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAAT
23568720 ATAATTTGAAATAATTATTATTAAATATATTTTAATTAAAATATATAATCTAATAAAATTATTAA
1 ATAATTTGAAATAATTATTATTAAATATATTTTAATTAAAATATATAATCTAATAAAATTATTAA
*
23568785 TAATAAATATTCTTATATGAATTTACTAAAATCACAATATATGATACTATAAAAT
66 TAATAAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAAT
23568840 ATAATTTGAAATAATTATTATTAAATATATTTTAATTAAAATATATAATCTAATAAAATTATTAA
1 ATAATTTGAAATAATTATTATTAAATATATTTTAATTAAAATATATAATCTAATAAAATTATTAA
23568905 TAATAAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAAT
66 TAATAAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAAT
23568960 AT
1 AT
23568962 TTTTAATTAA
Statistics
Matches: 463, Mismatches: 17, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
120 460 0.99
121 3 0.01
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.42
Consensus pattern (120 bp):
ATAATTTGAAATAATTATTATTAAATATATTTTAATTAAAATATATAATCTAATAAAATTATTAA
TAATAAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAAT
Found at i:23571145 original size:6 final size:6
Alignment explanation
Indices: 23571132--23571175 Score: 61
Period size: 6 Copynumber: 7.2 Consensus size: 6
23571122 ACCCTTCTTC
* *
23571132 TCCCCTT TCCCTT TCCCCT TCCCCT TCCCTT TCCCCT TCCCCT T
1 TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT T
23571176 GGTTTGCAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
6 29 0.88
7 4 0.12
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (6 bp):
TCCCCT
Found at i:23571161 original size:18 final size:18
Alignment explanation
Indices: 23571132--23571175 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
23571122 ACCCTTCTTC
23571132 TCCCCTTTCCCTTTCCCCT
1 TCCCC-TTCCCTTTCCCCT
23571151 TCCCCTTCCCTTTCCCCT
1 TCCCCTTCCCTTTCCCCT
23571169 TCCCCTT
1 TCCCCTT
23571176 GGTTTGCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 20 0.80
19 5 0.20
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (18 bp):
TCCCCTTCCCTTTCCCCT
Found at i:23574313 original size:18 final size:17
Alignment explanation
Indices: 23574291--23574425 Score: 95
Period size: 18 Copynumber: 8.0 Consensus size: 17
23574281 AATACTAAGA
23574291 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
23574308 ATTTTTGTTAAA-T-TAT
1 A-TTTTATTAAATTATAT
* *
23574324 A-TTTAAT-AATAAT-T
1 ATTTTATTAAATTATAT
* *
23574338 ATTTTAAATTATATTTTAT
1 ATTTT--ATTAAATTATAT
* *
23574357 AATATTA-TATATTATA-
1 -ATTTTATTAAATTATAT
*
23574373 ATTTTAGTAAATTCATAT
1 ATTTTATTAAATT-ATAT
23574391 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
23574408 ATTTTTATTAAATTATAT
1 A-TTTTATTAAATTATAT
23574426 TTAATAATAA
Statistics
Matches: 92, Mismatches: 13, Indels: 25
0.71 0.10 0.19
Matches are distributed among these distances:
13 2 0.02
14 6 0.07
15 9 0.10
16 9 0.10
17 20 0.22
18 41 0.45
19 1 0.01
20 4 0.04
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:23574344 original size:26 final size:25
Alignment explanation
Indices: 23574306--23574364 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
23574296 ATTAAATTAT
*
23574306 ATATTTTTGTTAAATTATATTTAATA
1 ATATTATT-TTAAATTATATTTAATA
*
23574332 ATAATTATTTTAAATTATATTTTATA
1 AT-ATTATTTTAAATTATATTTAATA
23574358 ATATTAT
1 ATATTAT
23574365 ATATTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 20 0.67
27 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTATTTTAAATTATATTTAATA
Found at i:23574363 original size:15 final size:15
Alignment explanation
Indices: 23574319--23574374 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
23574309 TTTTTGTTAA
*
23574319 ATTATATTTAATAAT
1 ATTATATTTTATAAT
*
23574334 AAT-TA-TTT-TAA-
1 ATTATATTTTATAAT
23574345 ATTATATTTTATAAT
1 ATTATATTTTATAAT
*
23574360 ATTATATATTATAAT
1 ATTATATTTTATAAT
23574375 TTTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 2 0.06
12 5 0.15
13 5 0.15
14 5 0.15
15 16 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATATTTTATAAT
Found at i:23574363 original size:120 final size:120
Alignment explanation
Indices: 23574149--23574391 Score: 459
Period size: 120 Copynumber: 2.0 Consensus size: 120
23574139 TGATACAATC
*
23574149 ATAAGAATATTTAATACTAAGAATTTTATTAATTTATATATTTTTGTTAAATTATATTTAATAAT
1 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
* *
23574214 AATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCAT
66 AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
23574269 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
1 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
23574334 AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
66 AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
23574389 ATA
1 ATA
23574392 TTTTATTAAA
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (120 bp):
ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
Found at i:23574392 original size:41 final size:40
Alignment explanation
Indices: 23574227--23574410 Score: 118
Period size: 41 Copynumber: 4.6 Consensus size: 40
23574217 TATTTTAAAT
* *
23574227 TATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
1 TATATTTTATAATATTATATATTATAATTTTAGTAAATT-A
* * * *
23574268 TATA----AGAATATT-TAATACTAAGAATTTTATTAAATTA
1 TATATTTTATAATATTAT-ATA-TTATAATTTTAGTAAATTA
* **
23574305 TATATTTTTGTTAA-ATTATAT-TTAATAATAATTATTTTAAA-T-
1 TATA-TTTT-ATAATATTATATATT-ATAAT--TT-TAGTAAATTA
23574347 TATATTTTATAATATTATATATTATAATTTTAGTAAATTCA
1 TATATTTTATAATATTATATATTATAATTTTAGTAAATT-A
23574388 TATATTTTATTAA-ATTATATATT
1 TATATTTTA-TAATATTATATATT
23574411 TTTATTAAAT
Statistics
Matches: 110, Mismatches: 14, Indels: 38
0.68 0.09 0.23
Matches are distributed among these distances:
36 1 0.01
37 14 0.13
38 19 0.17
39 3 0.03
40 4 0.04
41 43 0.39
42 14 0.13
43 6 0.05
44 6 0.05
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (40 bp):
TATATTTTATAATATTATATATTATAATTTTAGTAAATTA
Found at i:23574615 original size:21 final size:21
Alignment explanation
Indices: 23574589--23574643 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
23574579 ACCGCTGTTT
*
23574589 CTAATCTCACTGCTACAGTAAC
1 CTAATCTCACCGCTACAGT-AC
23574611 C-AATCTCACCGCTACAGTAC
1 CTAATCTCACCGCTACAGTAC
23574631 CTAATCTCACCGC
1 CTAATCTCACCGC
23574644 CATCGCTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
20 3 0.10
21 27 0.87
22 1 0.03
ACGTcount: A:0.29, C:0.38, G:0.09, T:0.24
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAC
Found at i:23577837 original size:50 final size:51
Alignment explanation
Indices: 23577714--23577899 Score: 207
Period size: 50 Copynumber: 3.7 Consensus size: 51
23577704 AAAGTGATGG
* * * * * *
23577714 TCACGTGTGTAGTACTATGTGCAAGCTACTATGTGTGCCAGA-A-TGATAGG
1 TCACATGTATAGTACTATGTGCAGGCTACTATGTGTACCAGATAGT-ATTGA
* *
23577764 TCGCATGTATAGTACTATGTGCAGGCTACTATGTGTACCAGATAGTTTTGA
1 TCACATGTATAGTACTATGTGCAGGCTACTATGTGTACCAGATAGTATTGA
* * * * * * *
23577815 TCACGTGTGTAGTACTAT-TGCAGGCTACTACGTGTATCGGATGGTAATGA
1 TCACATGTATAGTACTATGTGCAGGCTACTATGTGTACCAGATAGTATTGA
23577865 TCACATGTATAGTACTATGTGCAGGCTACTATGTG
1 TCACATGTATAGTACTATGTGCAGGCTACTATGTG
23577900 AACTGAACAT
Statistics
Matches: 113, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
50 79 0.70
51 33 0.29
52 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (51 bp):
TCACATGTATAGTACTATGTGCAGGCTACTATGTGTACCAGATAGTATTGA
Found at i:23577872 original size:101 final size:101
Alignment explanation
Indices: 23577714--23577899 Score: 268
Period size: 101 Copynumber: 1.8 Consensus size: 101
23577704 AAAGTGATGG
* * * *
23577714 TCACGTGTGTAGTACTATGTGCAAGCTACTATGTGTGCCAGAATGATAGGTCGCATGTATAGTAC
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCAGAATGATAGATCACATGTATAGTAC
23577779 TATGTGCAGGCTACTATGTGTACCAGATAGTTTTGA
66 TATGTGCAGGCTACTATGTGTACCAGATAGTTTTGA
* * * *
23577815 TCACGTGTGTAGTACTAT-TGCAGGCTACTACGTGTATC-GGATGGTAATGATCACATGTATAGT
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCAGAATGAT-A-GATCACATGTATAGT
23577878 ACTATGTGCAGGCTACTATGTG
64 ACTATGTGCAGGCTACTATGTG
23577900 AACTGAACAT
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
99 5 0.07
100 17 0.23
101 53 0.71
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCAGAATGATAGATCACATGTATAGTAC
TATGTGCAGGCTACTATGTGTACCAGATAGTTTTGA
Found at i:23577992 original size:45 final size:45
Alignment explanation
Indices: 23577906--23577993 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
23577896 TGTGAACTGA
* * *
23577906 ACATCATTGATTAGTAAGGTGGTTGCTATGTACTGATTCCACCGG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTACTAAATCCACCGG
*
23577951 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCCACC
1 ACATCATTGATTAATAAGGTGGTTGCTATGTACTAAATCCACC
23577994 TAGTATCTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATGTACTAAATCCACCGG
Found at i:23583289 original size:51 final size:51
Alignment explanation
Indices: 23583230--23583354 Score: 162
Period size: 51 Copynumber: 2.5 Consensus size: 51
23583220 TGGTCACGTA
* * *
23583230 TGTAGTACTATGTGCAGACTACTATGCATATCAGATAGT-TTCGATCACATG
1 TGTAGTACTATGTGCAGGCTACTACGCATATCAGATAGTAAT-GATCACATG
** * * *
23583281 TGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGTAATGGTCACATG
1 TGTAGTACTATGTGCAGGCTACTACGCATATCAGATAGTAATGATCACATG
23583332 TGTAGTACTATGTGCAGGCTACT
1 TGTAGTACTATGTGCAGGCTACT
23583355 GTGTGAACTG
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
51 64 0.98
52 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.33
Consensus pattern (51 bp):
TGTAGTACTATGTGCAGGCTACTACGCATATCAGATAGTAATGATCACATG
Found at i:23589729 original size:43 final size:43
Alignment explanation
Indices: 23589458--23589709 Score: 369
Period size: 43 Copynumber: 5.9 Consensus size: 43
23589448 TTATGTGGAA
* *
23589458 AAACGCCGCTATAGAACATGACCTTTAGCGGCACTTTCCCCAC
1 AAACGCTGCTAAAGAACATGACCTTTAGCGGCACTTTCCCCAC
*** * * *
23589501 AAACGCTGCTAAAGAACATGACCTTTAGCGTTGCTTTTCCTAT
1 AAACGCTGCTAAAGAACATGACCTTTAGCGGCACTTTCCCCAC
* * *
23589544 AAACGCCGCTAAAGAACATGACCTTTAGTGGCGCTTTCCCCAC
1 AAACGCTGCTAAAGAACATGACCTTTAGCGGCACTTTCCCCAC
* * **
23589587 AGATGCCACTAAAGAACATGACCTTTAGCGGCACTTTCCCCAC
1 AAACGCTGCTAAAGAACATGACCTTTAGCGGCACTTTCCCCAC
23589630 AAACGCTGCTAAAGAACATGACCTTTAGCGGCACTTTCCCCAC
1 AAACGCTGCTAAAGAACATGACCTTTAGCGGCACTTTCCCCAC
23589673 AAACGCTGCTAAAGAACATGACCTTTAGCGGCACTTT
1 AAACGCTGCTAAAGAACATGACCTTTAGCGGCACTTT
23589710 TTCCAAAAAT
Statistics
Matches: 185, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 185 1.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.23
Consensus pattern (43 bp):
AAACGCTGCTAAAGAACATGACCTTTAGCGGCACTTTCCCCAC
Found at i:23590192 original size:66 final size:65
Alignment explanation
Indices: 23590086--23590215 Score: 174
Period size: 66 Copynumber: 2.0 Consensus size: 65
23590076 ATTCTGAAGC
* * *
23590086 TGTAGCTGGAGTTCATCATATTTTCTACTTGCCTTTGCTTCCCTC-ACTGCTGCCTCTGCTTTAA
1 TGTAGCTGGAGTTCATCATATTTTCTA-TTGCCTCTGCTTCCCTCGA-TGCTACCTCCGCTTTAA
23590150 CT
64 CT
*
23590152 TGTAGCTGGAGTTCATCATATTTTCT-TTAAGCCTCTGCTTCTCTCGATGCTACCTCCGCTTTAA
1 TGTAGCTGGAGTTCATCATATTTTCTATT--GCCTCTGCTTCCCTCGATGCTACCTCCGCTTTAA
23590216 GTTGAGCAGT
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
64 2 0.04
66 54 0.95
67 1 0.02
ACGTcount: A:0.15, C:0.28, G:0.15, T:0.42
Consensus pattern (65 bp):
TGTAGCTGGAGTTCATCATATTTTCTATTGCCTCTGCTTCCCTCGATGCTACCTCCGCTTTAACT
Found at i:23595885 original size:35 final size:35
Alignment explanation
Indices: 23595846--23595912 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
23595836 TTTTTTTATT
23595846 CTTTAAATATTTATGTAAGTTATGATAATCATAAA
1 CTTTAAATATTTATGTAAGTTATGATAATCATAAA
* *
23595881 CTTTAAATGTTTATGTAAGTTATGATTATCAT
1 CTTTAAATATTTATGTAAGTTATGATAATCAT
23595913 CTTTAAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.46
Consensus pattern (35 bp):
CTTTAAATATTTATGTAAGTTATGATAATCATAAA
Found at i:23597095 original size:99 final size:99
Alignment explanation
Indices: 23596913--23597098 Score: 284
Period size: 99 Copynumber: 1.9 Consensus size: 99
23596903 ATAATTGAAC
* * **
23596913 TAAACGGTTCTACTTAATATCAAAATTCAATAAATTGAACTAAATTAATTTTTTTAAAAACGCAT
1 TAAACGGTTCCACTTAATATCAAAACTCAATAAATTGAACTAAATTAACCTTTTTAAAAACGCAT
*
23596978 AATTGAACAAGCAGTTTTACTTTGTATAACAGAA
66 AATTGAACAAACAGTTTTACTTTGTATAACAGAA
* **
23597012 TAAATGGTTCCACTTAATATCAAAACTCAATAAATTGAACTAAATTAACCTTTTTAAAAATTCAT
1 TAAACGGTTCCACTTAATATCAAAACTCAATAAATTGAACTAAATTAACCTTTTTAAAAACGCAT
23597077 AATTGAACAAAC-GTTTTTACTT
66 AATTGAACAAACAG-TTTTACTT
23597099 AATATCAAAT
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
98 1 0.01
99 77 0.99
ACGTcount: A:0.43, C:0.13, G:0.08, T:0.36
Consensus pattern (99 bp):
TAAACGGTTCCACTTAATATCAAAACTCAATAAATTGAACTAAATTAACCTTTTTAAAAACGCAT
AATTGAACAAACAGTTTTACTTTGTATAACAGAA
Found at i:23597106 original size:72 final size:72
Alignment explanation
Indices: 23597023--23597245 Score: 225
Period size: 72 Copynumber: 3.1 Consensus size: 72
23597013 AAATGGTTCC
*
23597023 ACTTAATATCAAAACTCAATAAATTGAACTAAATTAACCTTTTTAAAAATTCATAATTGAACAAA
1 ACTTAATATCAAAACTCAATAAATTGAACTAAATTAACCTTTTTAAAAATTCATAATTAAACAAA
*
23597088 CGTTTTT
66 CGATTTT
** ** * ** * *
23597095 ACTTAATATCAAATTTCAATAAATCAAACTAAATTAAGC-TTTTGGAAATGT-ATAACTAAATAA
1 ACTTAATATCAAAACTCAATAAATTGAACTAAATTAACCTTTTTAAAAAT-TCATAATTAAACAA
* ** *
23597158 ATGGGTTC
65 ACGATTTT
* * * * **
23597166 GCGTAATATAAAAACTTAATAAATTGAACTAAATTAACCTTTTTAAAAACACATAATTAAACAAA
1 ACTTAATATCAAAACTCAATAAATTGAACTAAATTAACCTTTTTAAAAATTCATAATTAAACAAA
*
23597231 CAATTTT
66 CGATTTT
23597238 ACTTAATA
1 ACTTAATA
23597246 ATTAATCGAA
Statistics
Matches: 112, Mismatches: 36, Indels: 6
0.73 0.23 0.04
Matches are distributed among these distances:
71 51 0.46
72 61 0.54
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.34
Consensus pattern (72 bp):
ACTTAATATCAAAACTCAATAAATTGAACTAAATTAACCTTTTTAAAAATTCATAATTAAACAAA
CGATTTT
Found at i:23599328 original size:38 final size:38
Alignment explanation
Indices: 23599277--23599411 Score: 128
Period size: 41 Copynumber: 3.4 Consensus size: 38
23599267 AAAATGATAC
*
23599277 TTTGCGGCCTTTTTCTCAGT-GCTGCTAATGCTTGACCT
1 TTTGCGGCATTTTTCTCA-TAGCTGCTAATGCTTGACCT
**
23599315 TTTGCGGTGTTTTTCTCATAAACGCTGCTAATGCTTGACCT
1 TTTGCGGCATTTTTCTCAT--A-GCTGCTAATGCTTGACCT
* * *
23599356 TTTGAGGCATTTTTCTCATAAATGCTGCTACTGCTTTACCT
1 TTTGCGGCATTTTTCTCAT--A-GCTGCTAATGCTTGACCT
* *
23599397 ATTGCGACATTTTTC
1 TTTGCGGCATTTTTC
23599412 CGTCCAAACG
Statistics
Matches: 82, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.01
38 16 0.20
41 65 0.79
ACGTcount: A:0.16, C:0.23, G:0.18, T:0.43
Consensus pattern (38 bp):
TTTGCGGCATTTTTCTCATAGCTGCTAATGCTTGACCT
Found at i:23599353 original size:41 final size:41
Alignment explanation
Indices: 23599297--23599411 Score: 158
Period size: 41 Copynumber: 2.8 Consensus size: 41
23599287 TTTTCTCAGT
**
23599297 GCTGCTAATGCTTGACCTTTTGCGGTGTTTTTCTCATAAAC
1 GCTGCTAATGCTTGACCTTTTGCGGCATTTTTCTCATAAAC
* *
23599338 GCTGCTAATGCTTGACCTTTTGAGGCATTTTTCTCATAAAT
1 GCTGCTAATGCTTGACCTTTTGCGGCATTTTTCTCATAAAC
* * * *
23599379 GCTGCTACTGCTTTACCTATTGCGACATTTTTC
1 GCTGCTAATGCTTGACCTTTTGCGGCATTTTTC
23599412 CGTCCAAACG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 65 1.00
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.42
Consensus pattern (41 bp):
GCTGCTAATGCTTGACCTTTTGCGGCATTTTTCTCATAAAC
Found at i:23600827 original size:7 final size:7
Alignment explanation
Indices: 23600815--23600853 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
23600805 TTTCTTCAAT
23600815 TCAACTC
1 TCAACTC
23600822 TCAACTC
1 TCAACTC
*
23600829 TCAAAAT-
1 TC-AACTC
23600836 TCAACTC
1 TCAACTC
23600843 TCAACTC
1 TCAACTC
23600850 TCAA
1 TCAA
23600854 TTTATTGTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 3 0.11
7 22 0.79
8 3 0.11
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.28
Consensus pattern (7 bp):
TCAACTC
Found at i:23600836 original size:21 final size:21
Alignment explanation
Indices: 23600812--23600853 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
23600802 TATTTTCTTC
23600812 AATTCAACTCTCAACTCTCAA
1 AATTCAACTCTCAACTCTCAA
23600833 AATTCAACTCTCAACTCTCAA
1 AATTCAACTCTCAACTCTCAA
23600854 TTTATTGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.33, G:0.00, T:0.29
Consensus pattern (21 bp):
AATTCAACTCTCAACTCTCAA
Found at i:23609020 original size:19 final size:20
Alignment explanation
Indices: 23608986--23609023 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
23608976 ATATTATTTC
23608986 TATTCCATTGTAATATTTAT
1 TATTCCATTGTAATATTTAT
*
23609006 TATTGCATTGT-ATATTTA
1 TATTCCATTGTAATATTTA
23609024 ATGTAGCATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.29, C:0.08, G:0.08, T:0.55
Consensus pattern (20 bp):
TATTCCATTGTAATATTTAT
Found at i:23609032 original size:19 final size:20
Alignment explanation
Indices: 23608991--23609032 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
23608981 ATTTCTATTC
* *
23608991 CATTGTAATATTTATTATTG
1 CATTGTAATATTTAATATAG
*
23609011 CATTGT-ATATTTAATGTAG
1 CATTGTAATATTTAATATAG
23609030 CAT
1 CAT
23609033 CACATCATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (20 bp):
CATTGTAATATTTAATATAG
Found at i:23615389 original size:44 final size:44
Alignment explanation
Indices: 23615333--23615761 Score: 383
Period size: 44 Copynumber: 9.8 Consensus size: 44
23615323 ATATTAGTAG
* *
23615333 GAAGTGGATCGAAGATGTAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGC
* * * * *
23615377 GGAGTATATCGAAGAAAGCAGATCTTGTCTT--C--ATTGG-CGT
1 GAAGTAGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGC
* * * *
23615417 GAAATAGATCGAAGATAGCAGGTCTTGTCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGC
*
23615461 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGC
* *** * *
23615505 -AGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 GA-AGTAGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGC
* * * * *
23615549 GAAGTAGATCGAAGATAACAGATCCTCTCTTCCTATATTGGTAGC
1 GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGC
* *
23615594 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGC
1 GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGC
* *** * *
23615638 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGC
* * * * *
23615682 GAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTTGTAG-
1 GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGC
* *
23615726 GAAGTGGATCGAAGATACAGATCTTGTCTTCCCATA
1 GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATA
23615762 CTGNGGAGAT
Statistics
Matches: 308, Mismatches: 61, Indels: 33
0.77 0.15 0.08
Matches are distributed among these distances:
39 1 0.00
40 25 0.08
41 5 0.02
43 44 0.14
44 157 0.51
45 76 0.25
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (44 bp):
GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGC
Found at i:23615635 original size:133 final size:131
Alignment explanation
Indices: 23615299--23615764 Score: 742
Period size: 133 Copynumber: 3.6 Consensus size: 131
23615289 GCAGATCAGT
* * * *
23615299 GAAGATAGCAGGTCATGTCTTCATATATTAGTAGGAAGTGGATCGAAGATGTAGATCTTGTCTTC
1 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
* * *
23615364 CCATATTGGTGGCGGAGTATATCGAAGAAAGCAGATCTTGTCTTC----ATTGGCGTGAAATAGA
66 CCATACTGGTGGC-GAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
23615425 TC
130 TC
*
23615427 GAAGATAGCAGGTCTTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
1 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
*
23615492 CCATATTGGTGGCAGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
66 CCATACTGGTGGC-GAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
23615557 TC
130 TC
* * *
23615559 GAAGATAACAGATCCTCTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTT
1 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTT
23615624 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
65 CCCATACTGGTGGCG-AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
23615689 ATC
129 ATC
* *
23615692 GAAGATAGCAGGTCCTGTCTTCCTATATTTGTAGGAAGTGGATCGAAGATACAGATCTTGTCTTC
1 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
23615757 CCATACTG
66 CCATACTG
23615765 NGGAGATAGA
Statistics
Matches: 315, Mismatches: 17, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
128 104 0.33
132 86 0.27
133 125 0.40
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (131 bp):
GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
CCATACTGGTGGCGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAT
C
Found at i:23620237 original size:44 final size:44
Alignment explanation
Indices: 23620054--23620567 Score: 359
Period size: 44 Copynumber: 11.7 Consensus size: 44
23620044 ATATTAGTAG
* * *
23620054 GAAGTGGATCGAAGATGTAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGAC
* * * * * * * * *
23620098 GGAGTAGATCAAAAAAAGAAGATCTTATCTT----TATTAGCG-T
1 GAAGTAGATC-GAAGATGCAGATCTTGTCTTCCCATATTGGTGAC
* * * * *
23620138 GAAGTAGATTGAAGATAGTAGGTCCTGTC-TCCCTATATTGGT-AG
1 GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCC-ATATTGGTGAC
*
23620182 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGAC
1 GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGAC
* * *** * *
23620226 GGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCG-T
1 GAAGTAGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGAC
* *
23620270 GAAGTAGATCGAAGATAACAGATCTTGTCTTCCTATATTGGT-AGC
1 GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGA-C
* * *
23620315 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGC
1 GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGAC
* * *** * *
23620359 GAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCG-T
1 GAAGTAGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGAC
* * * * *
23620403 GAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTTGT-AG
1 GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGAC
* * * *
23620447 GAAGTGGATCGAAGATACAGATCTTGTCTTCCCATACTGGTGGC
1 GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGAC
* * * *** * *
23620491 GAAGTAGATCGAAGAAAGTAGATCTTGTTTTCATGTATTGG-CAT
1 GAAGTAGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGAC
*
23620535 GAAGTAGATCGAAGATAGCAGATCTTGCCTTCC
1 GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCC
23620568 TGTACCGACA
Statistics
Matches: 357, Mismatches: 92, Indels: 42
0.73 0.19 0.09
Matches are distributed among these distances:
39 4 0.01
40 16 0.04
41 6 0.02
43 39 0.11
44 200 0.56
45 92 0.26
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (44 bp):
GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGAC
Found at i:23620526 original size:265 final size:260
Alignment explanation
Indices: 23620020--23620568 Score: 828
Period size: 265 Copynumber: 2.1 Consensus size: 260
23620010 GCAGATCAGT
* * * *
23620020 GAAGATAGCAGGTCATGTCTTCATATATTAGTAGGAAGTGGATCGAAGATGTAGATCTTGTCTTC
1 GAAGATAGCAGATCTTGTCTTCCTATATTAGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
* * *
23620085 CCATATTGGTGGCGGAGTAGATCAAAAAAAGAAGATCTTATCTTTATTAGCGTGAAGTAGATTGA
66 CCATACTGGTGGCGAAGTAGATCAAAAAAAGAAGATCTTATCTTTATTAGCGTGAAGTAGATCGA
* *
23620150 AGATAGTAGGTCCTGTCTCCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCC
131 AGATAGCAGGTCCTGTCTCCCTATATTGGTAGGAAGTGGATCGAAGATACAGATCTTGTCTTCCC
* * *
23620215 ATATTGGTGACGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
196 ATACTGGTGACGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATC
* *
23620280 GAAGATAACAGATCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTT
1 GAAGATAGCAGATCTTGTCTTCCTATATTAGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTT
* * * * *
23620345 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
65 CCCATACTGGTGGCGAAGTAGATCAAAAAAAGAAGATCTTATC-T--T-TATTAGCGTGAAGTAG
* *
23620410 ATCGAAGATAGCAGGTCCTGTCTTCCTATATTTGTAGGAAGTGGATCGAAGATACAGATCTTGTC
126 ATCGAAGATAGCAGGTCCTGTCTCCCTATATTGGTAGGAAGTGGATCGAAGATACAGATCTTGTC
* * *
23620475 TTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTTTTCATGTATTGGCATGAAGT
191 TTCCCATACTGGTGACGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGT
23620540 AGATC
256 AGATC
*
23620545 GAAGATAGCAGATCTTGCCTTCCT
1 GAAGATAGCAGATCTTGTCTTCCT
23620569 GTACCGACAG
Statistics
Matches: 258, Mismatches: 26, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
260 29 0.11
261 66 0.26
262 1 0.00
264 1 0.00
265 161 0.62
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (260 bp):
GAAGATAGCAGATCTTGTCTTCCTATATTAGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
CCATACTGGTGGCGAAGTAGATCAAAAAAAGAAGATCTTATCTTTATTAGCGTGAAGTAGATCGA
AGATAGCAGGTCCTGTCTCCCTATATTGGTAGGAAGTGGATCGAAGATACAGATCTTGTCTTCCC
ATACTGGTGACGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATC
Found at i:23620568 original size:132 final size:132
Alignment explanation
Indices: 23620020--23620555 Score: 810
Period size: 132 Copynumber: 4.1 Consensus size: 132
23620010 GCAGATCAGT
* * * *
23620020 GAAGATAGCAGGTCATGTCTTCATATATTAGTAGGAAGTGGATCGAAGATGTAGATCTTGTCTTC
1 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
* * * * * * *
23620085 CCATATTGGTGGCGGAGTAGATCAAAAAAAGAAGATCTTATC-T--T-TATTAGCGTGAAGTAGA
66 CCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
*
23620146 TT
131 TC
* *
23620148 GAAGATAGTAGGTCCTGTCTCCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
1 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
* * * *
23620213 CCATATTGGTGACGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
66 CCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
23620278 TC
131 TC
* * *
23620280 GAAGATAACAGATCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTT
1 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTT
23620345 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
65 CCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAG
23620410 ATC
130 ATC
* *
23620413 GAAGATAGCAGGTCCTGTCTTCCTATATTTGTAGGAAGTGGATCGAAGATACAGATCTTGTCTTC
1 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
* *
23620478 CCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTTTTCATGTATTGGCATGAAGTAGA
66 CCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
23620543 TC
131 TC
23620545 GAAGATAGCAG
1 GAAGATAGCAG
23620556 ATCTTGCCTT
Statistics
Matches: 374, Mismatches: 29, Indels: 6
0.91 0.07 0.01
Matches are distributed among these distances:
128 96 0.26
129 1 0.00
131 1 0.00
132 152 0.41
133 124 0.33
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTC
CCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
TC
Found at i:23620679 original size:265 final size:264
Alignment explanation
Indices: 23620138--23620682 Score: 641
Period size: 265 Copynumber: 2.1 Consensus size: 264
23620128 TTATTAGCGT
* * *
23620138 GAAGTAGATTGAAGATAGTAGGTCCTGTCTCCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTGTCTCCCTATATTGGTAGGAAGTGGATCGAAGATACAGA
* *
23620203 TCTTGTCTTCCCATATTGGTGACGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATACTGGTGACGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
* * ** ** ** **
23620268 GTGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGC
131 ATGAAGTAGATCGAAGATAACAGATCTTGCCTTCCTATACCGACAGCGAAGCAGATCGAAGACAC
* * * * * * * * *
23620333 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATT
196 AGACCTTGTCCTCCCATA-TGGTGGCGAAGCAGAGCGAAAAAAGCAGATCTTGCCTTCATGCATC
* *
23620398 GGCGT
260 GGAGC
* *
23620403 GAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTTGTAGGAAGTGGATCGAAGATACAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTGTCTCCCTATATTGGTAGGAAGTGGATCGAAGATACAGA
* * *
23620468 TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTTTTCATGTATTGGC
66 TCTTGTCTTCCCATACTGGTGACGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
* *
23620533 ATGAAGTAGATCGAAGATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCGAAGACAC
131 ATGAAGTAGATCGAAGATAACAGATCTTGCCTTCCTATACCGACAGCGAAGCAGATCGAAGACAC
* * * *
23620598 TAG-CCTTG-CCT-CCGT-TGGTTGCAGCGGAGCAG-GCTAAAAATAGCAGATCTTGCCTTCCTG
196 -AGACCTTGTCCTCCCATATGG-TG--GCGAAGCAGAGCGAAAAA-AGCAGATCTTGCCTTCATG
*
23620658 CATCGATAGC
256 CATCG-GAGC
*
23620668 GAAGCAGATCGAAGA
1 GAAGTAGATCGAAGA
23620683 CACTAGCCTT
Statistics
Matches: 235, Mismatches: 39, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
261 3 0.01
262 2 0.01
263 8 0.03
264 28 0.12
265 192 0.82
266 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (264 bp):
GAAGTAGATCGAAGATAGCAGGTCCTGTCTCCCTATATTGGTAGGAAGTGGATCGAAGATACAGA
TCTTGTCTTCCCATACTGGTGACGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
ATGAAGTAGATCGAAGATAACAGATCTTGCCTTCCTATACCGACAGCGAAGCAGATCGAAGACAC
AGACCTTGTCCTCCCATATGGTGGCGAAGCAGAGCGAAAAAAGCAGATCTTGCCTTCATGCATCG
GAGC
Found at i:23620878 original size:88 final size:88
Alignment explanation
Indices: 23620549--23620855 Score: 524
Period size: 88 Copynumber: 3.5 Consensus size: 88
23620539 TAGATCGAAG
* ** * *
23620549 ATAGCAGATCTTGCCTTCCTGTACCGACAGCGAAGCAGATCGAAGACACTAGCCTTGCCTCCGTT
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTATCTCCCTA
*
23620614 GGTTGCAGCGGAGCAGGCTAAAA
66 GGTTGCAGCAGAGCAGGCTAAAA
* *
23620637 ATAGCAGATCTTGCCTTCCTGCATCGATAGCGAAGCAGATCGAAGACACTAGCCTTATCTCCCTA
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTATCTCCCTA
23620702 GGTTGCAGCAGAGCAGGCTAAAA
66 GGTTGCAGCAGAGCAGGCTAAAA
*
23620725 ATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCGAAGACACTAGCCTTATCTCCCTA
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTATCTCCCTA
23620790 GGTTGCAGCAGAGCAGGCTAAAA
66 GGTTGCAGCAGAGCAGGCTAAAA
*
23620813 ATAGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGA
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGA
23620856 TGACCCCAGC
Statistics
Matches: 206, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 206 1.00
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21
Consensus pattern (88 bp):
ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTATCTCCCTA
GGTTGCAGCAGAGCAGGCTAAAA
Found at i:23620915 original size:44 final size:43
Alignment explanation
Indices: 23620867--23621031 Score: 204
Period size: 44 Copynumber: 3.7 Consensus size: 43
23620857 GACCCCAGCT
* *
23620867 CTATCTTCCTAGCCAACAGTGGAATAGGTTAAAGATTGTGAATC
1 CTATCTCCCTAG-CAGCAGTGGAATAGGTTAAAGATTGTGAATC
* * * *
23620911 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGCTTGAGAATC
1 CTATCTCCCTAG-CAGCAGTGGAATAGGTTAAAGATTGTGAATC
* * *
23620955 CTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTGTGAATC
1 CTATCTCCCT-AGCAGCAGTGGAATAGGTTAAAGATTGTGAATC
*
23620999 CTATCTCCCTAAGCAGCAGTGGAGTAGGTTAAA
1 CTATCTCCCT-AGCAGCAGTGGAATAGGTTAAA
23621032 AATAGCAGAT
Statistics
Matches: 105, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
44 103 0.98
45 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (43 bp):
CTATCTCCCTAGCAGCAGTGGAATAGGTTAAAGATTGTGAATC
Found at i:23621139 original size:44 final size:44
Alignment explanation
Indices: 23621006--23621140 Score: 130
Period size: 44 Copynumber: 3.1 Consensus size: 44
23620996 ATCCTATCTC
* *
23621006 CCTAAGCAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGCCTT
1 CCTAAGCAGCAGTGGAGTAGGTTGAAAATAGCAGGTCTTGCCTT
* * * * * * * * * *
23621050 CCTATACCGGCAGCGAAGCAGATCGAAAACT-CCA-GCCTTGTCTT
1 CCTA-AGCAGCAGTGGAGTAGGTTGAAAA-TAGCAGGTCTTGCCTT
23621094 CCTAAGCAGCAGTGGAGTAGGTTGAAAATAGCAGGTCTTGCCTT
1 CCTAAGCAGCAGTGGAGTAGGTTGAAAATAGCAGGTCTTGCCTT
23621138 CCT
1 CCT
23621141 GTACTAGCAA
Statistics
Matches: 65, Mismatches: 22, Indels: 8
0.68 0.23 0.08
Matches are distributed among these distances:
42 1 0.02
43 19 0.29
44 26 0.40
45 18 0.28
46 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (44 bp):
CCTAAGCAGCAGTGGAGTAGGTTGAAAATAGCAGGTCTTGCCTT
Found at i:23621753 original size:44 final size:43
Alignment explanation
Indices: 23621684--23622025 Score: 206
Period size: 44 Copynumber: 8.0 Consensus size: 43
23621674 TGCAATGACG
*
23621684 AATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CAAT
* * * **
23621728 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACTTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT
* * * ** *
23621771 GGATCTTATCTCTCTGAAGTTGCAG-AGAGCA-A--ATCGCATTT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCA-AT
* * ** ** *
23621812 AGTCTTATCTCCTTGAAGTTGCA-AAGAGCA-A--ATCGCATTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCA-AT
* ** * *
23621852 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCT-AAGTAAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAA-T
*
23621895 AAGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGAATGAAGATGGC-A-
1 AA-TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAG-ATTAA-A--GCAAT
*
23621941 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CAAT
* * * *
23621985 AATCCTATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCA
23622026 CTAGTTCCTA
Statistics
Matches: 238, Mismatches: 39, Indels: 43
0.74 0.12 0.13
Matches are distributed among these distances:
40 59 0.25
41 8 0.03
42 2 0.01
43 15 0.06
44 120 0.50
45 25 0.11
46 6 0.03
47 1 0.00
48 1 0.00
49 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT
Found at i:23621829 original size:40 final size:40
Alignment explanation
Indices: 23621774--23621875 Score: 170
Period size: 40 Copynumber: 2.5 Consensus size: 40
23621764 AAACTTTGGA
23621774 TCTTATCT-CTCTGAAGTTGCAGAGAGCAAATCGCATTTAG
1 TCTTATCTCCT-TGAAGTTGCAGAGAGCAAATCGCATTTAG
*
23621814 TCTTATCTCCTTGAAGTTGCAAAGAGCAAATCGCATTTAG
1 TCTTATCTCCTTGAAGTTGCAGAGAGCAAATCGCATTTAG
*
23621854 TCTTATCTCCCTGAAGTTGCAG
1 TCTTATCTCCTTGAAGTTGCAG
23621876 TGGAGCAGGC
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
40 56 0.97
41 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (40 bp):
TCTTATCTCCTTGAAGTTGCAGAGAGCAAATCGCATTTAG
Found at i:23623864 original size:19 final size:20
Alignment explanation
Indices: 23623823--23623864 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
23623813 ATTTCTATGC
* *
23623823 CATTGTAATATTTATTATTG
1 CATTGTAATATTTAATATAG
*
23623843 CATTGT-ATATTTAATGTAG
1 CATTGTAATATTTAATATAG
23623862 CAT
1 CAT
23623865 CACATCATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (20 bp):
CATTGTAATATTTAATATAG
Found at i:23629883 original size:25 final size:25
Alignment explanation
Indices: 23629854--23629923 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 25
23629844 TTAAAAAACA
*
23629854 TTTAAAAATATTAAATATTAATTTT
1 TTTAAAAATATTAAAAATTAATTTT
**
23629879 TTTAATCATA-TAATAAATTAATTTT
1 TTTAAAAATATTAA-AAATTAATTTT
23629904 TTTAGTCAAAATATTAAAAA
1 TTTA---AAAATATTAAAAA
23629924 ATCATGTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
24 3 0.09
25 22 0.63
28 7 0.20
29 3 0.09
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (25 bp):
TTTAAAAATATTAAAAATTAATTTT
Found at i:23641684 original size:14 final size:15
Alignment explanation
Indices: 23641665--23641694 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
23641655 TTTCCATTAA
23641665 ATATATATATA-AGC
1 ATATATATATAGAGC
23641679 ATATATATATAGAGC
1 ATATATATATAGAGC
23641694 A
1 A
23641695 AAAATAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (15 bp):
ATATATATATAGAGC
Found at i:23647412 original size:6 final size:6
Alignment explanation
Indices: 23647403--23647430 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
23647393 GAGAAAAGAA
23647403 AAAATC AAAATC AAAATC AAAATC AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAA
23647431 AAGGAAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.71, C:0.14, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAATC
Found at i:23647444 original size:31 final size:32
Alignment explanation
Indices: 23647409--23647469 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
23647399 AGAAAAAATC
*
23647409 AAAATCAAAATCAAAATCAAAAAAG-GAAAGA
1 AAAATCAAAATCAAAAGCAAAAAAGAGAAAGA
* *
23647440 AAAATCAGAGTCAAAAGCAAAAAAGAGAAA
1 AAAATCAAAATCAAAAGCAAAAAAGAGAAA
23647470 TCCATCAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 22 0.85
32 4 0.15
ACGTcount: A:0.69, C:0.10, G:0.13, T:0.08
Consensus pattern (32 bp):
AAAATCAAAATCAAAAGCAAAAAAGAGAAAGA
Found at i:23647888 original size:21 final size:21
Alignment explanation
Indices: 23647864--23647909 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
23647854 ATGATGTTCA
*
23647864 AAAACGAAAA-GATGAAAAATG
1 AAAACGAAAATGA-AAAAAATG
*
23647885 AAAATGAAAATGAAAAAAATG
1 AAAACGAAAATGAAAAAAATG
23647906 AAAA
1 AAAA
23647910 GTAAAATAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.72, C:0.02, G:0.15, T:0.11
Consensus pattern (21 bp):
AAAACGAAAATGAAAAAAATG
Found at i:23649293 original size:45 final size:45
Alignment explanation
Indices: 23649237--23649322 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
23649227 GCCTCCATCA
23649237 GTTGCAGTGGAGCT-GATTAAAGATAGCAGATCTTGCATTCCACCG
1 GTTGCAGTGGAGCTAG-TTAAAGATAGCAGATCTTGCATTCCACCG
* *
23649282 GTTGTAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCTTCC
1 GTTGCAGTGGAGCTAGTTAAAGATAGCAGATCTTGCATTCC
23649323 TGCATTAACA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
45 37 0.97
46 1 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (45 bp):
GTTGCAGTGGAGCTAGTTAAAGATAGCAGATCTTGCATTCCACCG
Found at i:23649389 original size:132 final size:131
Alignment explanation
Indices: 23649144--23649409 Score: 426
Period size: 132 Copynumber: 2.0 Consensus size: 131
23649134 AAACCTTGCC
* * * *
23649144 TCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGTCTTCCTACGTTAACAGCGAAGCA
1 TCCACCGGTTGCAGTGGAGCTAGTTAAAGAAGCAGATCTTGCCTTCCTACATTAACAGCGAAGCA
* *
23649209 GATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGATTAAAGATAGCAGATCTTGCA
66 GATCGAAAACAAAACCTTACCTCCATCAGTTGCAGTGGAGCTGATTAAAGATAGCAGATCTTGCA
23649274 T
131 T
* *
23649275 TCCACCGGTTGTAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGC
1 TCCACCGGTTGCAGTGGAGCTAGTTAAAGA-AGCAGATCTTGCCTTCCTACATTAACAGCGAAGC
23649340 AGATCGAAAACAAAACCTTACCTCCATCAGTTGCAGTGGAGCT-AGTTAAAGATAGCAGATCTTG
65 AGATCGAAAACAAAACCTTACCTCCATCAGTTGCAGTGGAGCTGA-TTAAAGATAGCAGATCTTG
*
23649404 CCT
129 CAT
23649407 TCC
1 TCC
23649410 TGCGTTAACA
Statistics
Matches: 124, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
131 28 0.23
132 96 0.77
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (131 bp):
TCCACCGGTTGCAGTGGAGCTAGTTAAAGAAGCAGATCTTGCCTTCCTACATTAACAGCGAAGCA
GATCGAAAACAAAACCTTACCTCCATCAGTTGCAGTGGAGCTGATTAAAGATAGCAGATCTTGCA
T
Found at i:23649433 original size:87 final size:87
Alignment explanation
Indices: 23649282--23649671 Score: 555
Period size: 87 Copynumber: 4.5 Consensus size: 87
23649272 CATTCCACCG
* *
23649282 GTTGTAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGA
1 GTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGA
*
23649347 AAACAAAACCTTACCTCCATCA
66 AAACAAAACCTTGCCTCCATCA
* * *
23649369 GTTGCAGTGGAGCTAGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGTAGATCGA
1 GTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGA
** *
23649434 AAATGAAGCCTTGCCTCCATCA
66 AAACAAAACCTTGCCTCCATCA
* * * * * * *
23649456 GTTGTAGTGGAGCTGGTTAAAGATAACAAATCTTGCCTTTCTGCATTAATAGAGAAGTAGATCGA
1 GTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGA
*
23649521 AAACAAAACCTTGCCTCCATCG
66 AAACAAAACCTTGCCTCCATCA
* * *
23649543 GTTGCAGTGGAACTGGTTAAAGATAACAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGA
1 GTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGA
** *
23649608 AAACAAAGTCTTGCCTCCATCG
66 AAACAAAACCTTGCCTCCATCA
* *
23649630 GTTACAATGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
1 GTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
23649672 AAGCACTAGC
Statistics
Matches: 270, Mismatches: 33, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 270 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (87 bp):
GTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGA
AAACAAAACCTTGCCTCCATCA
Found at i:23649929 original size:44 final size:44
Alignment explanation
Indices: 23649832--23649953 Score: 120
Period size: 44 Copynumber: 2.8 Consensus size: 44
23649822 TGAAGAAGCA
* * *
23649832 AATCTTATCTCCCTGAGGTTGCAGCGGAGCAGATTAAAGTCGAT
1 AATCTTATCTCCCTAAAGTTGCAGCGGAGCAGATTAAAGTCAAT
* * * *
23649876 AATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGT-AAT
1 AATCTTATCTCCCTAAAGTTGCAGCGGAGCAGATTAAAGTCAAT
* * * **
23649919 AGATCTTATCTCTCTGAACTTGCAGTAGAGCAGAT
1 A-ATCTTATCTCCCTAAAGTTGCAGCGGAGCAGAT
23649954 CGCATCAAAT
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
43 3 0.05
44 60 0.95
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTGCAGCGGAGCAGATTAAAGTCAAT
Found at i:23654172 original size:15 final size:15
Alignment explanation
Indices: 23654148--23654184 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
23654138 GAAACACTCA
*
23654148 AAAATTCCAAGAATG
1 AAAATCCCAAGAATG
23654163 AAAATCCCAAGAATG
1 AAAATCCCAAGAATG
23654178 AAAATCC
1 AAAATCC
23654185 AAGTTCATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.54, C:0.19, G:0.11, T:0.16
Consensus pattern (15 bp):
AAAATCCCAAGAATG
Found at i:23655263 original size:15 final size:15
Alignment explanation
Indices: 23655230--23655267 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
23655220 TCCCAACCCT
23655230 TAAA-CCATAATCCC
1 TAAATCCATAATCCC
23655244 T-AATCCATAATCCC
1 TAAATCCATAATCCC
23655258 TAAATCCATA
1 TAAATCCATA
23655268 TATAACCCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.09
14 12 0.55
15 8 0.36
ACGTcount: A:0.42, C:0.32, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:23655468 original size:24 final size:24
Alignment explanation
Indices: 23655423--23655477 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
23655413 TATATGAAAT
* *
23655423 TATTTAATATATAAATAAAAAACA
1 TATTTAAAATATAAATAAAAAAAA
**
23655447 TATTTAAAATATAAATTTAAAAAA
1 TATTTAAAATATAAATAAAAAAAA
*
23655471 TAATTAA
1 TATTTAA
23655478 TCTAAACCCA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (24 bp):
TATTTAAAATATAAATAAAAAAAA
Found at i:23655590 original size:28 final size:28
Alignment explanation
Indices: 23655480--23655611 Score: 76
Period size: 28 Copynumber: 4.8 Consensus size: 28
23655470 ATAATTAATC
23655480 TAAACCCA-AAACCCT-AA-CCCAACCCAT
1 TAAA-CCATAAACCCTAAATCCCAACCC-T
* * * **
23655507 GAATCCATAAACCCTAAATCGCTAAATCT
1 TAAACCATAAACCCTAAATC-CCAACCCT
* * * *
23655536 TAAACCCTAACCCCT-CA-CCCTCACCCT
1 TAAACCATAAACCCTAAATCCC-AACCCT
* * *
23655563 TAACCCCTAAACCTTAAATCCCAACCCT
1 TAAACCATAAACCCTAAATCCCAACCCT
*
23655591 TAAACCATAATCCCTAAATCC
1 TAAACCATAAACCCTAAATCC
23655612 ATACTTCGTA
Statistics
Matches: 75, Mismatches: 23, Indels: 13
0.68 0.21 0.12
Matches are distributed among these distances:
26 4 0.05
27 25 0.33
28 26 0.35
29 16 0.21
30 4 0.05
ACGTcount: A:0.38, C:0.41, G:0.02, T:0.20
Consensus pattern (28 bp):
TAAACCATAAACCCTAAATCCCAACCCT
Found at i:23655594 original size:21 final size:20
Alignment explanation
Indices: 23655564--23655604 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
23655554 CCTCACCCTT
*
23655564 AACCCCTAAACCTTAAATCCC
1 AACCCCTAAACCAT-AATCCC
*
23655585 AACCCTTAAACCATAATCCC
1 AACCCCTAAACCATAATCCC
23655605 TAAATCCATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (20 bp):
AACCCCTAAACCATAATCCC
Found at i:23656028 original size:41 final size:41
Alignment explanation
Indices: 23655971--23656108 Score: 206
Period size: 41 Copynumber: 3.4 Consensus size: 41
23655961 TAAAATGTTT
* * *
23655971 TTAGCGGCACTTTTTCAAAAACGCCGCTAAAGC-CAGCAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACACCG-AGCA
*
23656012 TTAGCGGCGCTTTTTCAGAAACGCCGCTAAAACACCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACACCGAGCA
* *
23656053 TTAGCGACGCTTTTTGAAAAACGCCGCTAAAACACCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACACCGAGCA
23656094 TTAGCGGCGCTTTTT
1 TTAGCGGCGCTTTTT
23656109 TTAAAACACC
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
41 86 0.98
42 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (41 bp):
TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACACCGAGCA
Found at i:23656115 original size:41 final size:41
Alignment explanation
Indices: 23655971--23656124 Score: 193
Period size: 41 Copynumber: 3.8 Consensus size: 41
23655961 TAAAATGTTT
* * * *
23655971 TTAGCGGCACTTTTTCAAAAACGCCGCTAAAGC-CAGCAGCA
1 TTAGCGGCGCTTTTTTAAAAACGCCGCTAAAACACCG-AGCA
* *
23656012 TTAGCGGCGCTTTTTCAGAAACGCCGCTAAAACACCGAGCA
1 TTAGCGGCGCTTTTTTAAAAACGCCGCTAAAACACCGAGCA
* *
23656053 TTAGCGACGCTTTTTGAAAAACGCCGCTAAAACACCGAGCA
1 TTAGCGGCGCTTTTTTAAAAACGCCGCTAAAACACCGAGCA
* * *
23656094 TTAGCGGCGCTTTTTTTAAAACACCACTAAA
1 TTAGCGGCGCTTTTTTAAAAACGCCGCTAAA
23656125 GCCCCGAAAG
Statistics
Matches: 100, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
41 98 0.98
42 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (41 bp):
TTAGCGGCGCTTTTTTAAAAACGCCGCTAAAACACCGAGCA
Found at i:23656233 original size:38 final size:40
Alignment explanation
Indices: 23656185--23656261 Score: 104
Period size: 38 Copynumber: 2.0 Consensus size: 40
23656175 TTTTTTGGAA
* * *
23656185 AAAAATGCCGCTAATTCTC-A-TTTTAGCGGCATTTTTTC
1 AAAAACGCCGCTAATGCTCAATTTTTACCGGCATTTTTTC
*
23656223 AAAAACGCCGCTAATGCTCAATTTTTACCGGCGTTTTTT
1 AAAAACGCCGCTAATGCTCAATTTTTACCGGCATTTTTT
23656262 GTCCAAATGC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 17 0.52
39 1 0.03
40 15 0.45
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (40 bp):
AAAAACGCCGCTAATGCTCAATTTTTACCGGCATTTTTTC
Found at i:23657843 original size:33 final size:33
Alignment explanation
Indices: 23657773--23657843 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 33
23657763 CTATCATTTT
* ** * *
23657773 TTATTTCTGTTTCACTGTTATTTTGTTGTTATT
1 TTATTTCTGTTTCACTGTCATTTTACTATTATA
* *
23657806 TTATTTTTGTTTCATTGTCATTTTACTATTATA
1 TTATTTCTGTTTCACTGTCATTTTACTATTATA
23657839 TTATT
1 TTATT
23657844 ATTATTTAGA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.17, C:0.08, G:0.08, T:0.66
Consensus pattern (33 bp):
TTATTTCTGTTTCACTGTCATTTTACTATTATA
Found at i:23659166 original size:13 final size:13
Alignment explanation
Indices: 23659148--23659174 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
23659138 GTAAAAACGC
23659148 TCTTTTCTTTTTT
1 TCTTTTCTTTTTT
23659161 TCTTTTCTTTTTT
1 TCTTTTCTTTTTT
23659174 T
1 T
23659175 ACAAGAACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
TCTTTTCTTTTTT
Found at i:23660585 original size:41 final size:41
Alignment explanation
Indices: 23660522--23660852 Score: 414
Period size: 41 Copynumber: 8.0 Consensus size: 41
23660512 TGAGTTTTTG
* *
23660522 AGGGCATTAGCGGCGTTTTTGAAGAAGCGCCGCTAAAGCTC
1 AGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
* *
23660563 AGGTCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGCTC
1 AGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
*
23660604 AGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
1 AGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
* * * * * *
23660645 AGGGCTTTAGCGACATTTCTGAAAAAGTGCCACTAATGCTC
1 AGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
** *
23660686 AGTTCTTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTC
1 AGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
* * *
23660727 TA--TCTTTAGCGGCGTTTATGAAGAAGCGTCGCTAATGCTC
1 -AGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
* * *
23660767 AGGGCTTTAGCGGCGTTTTTTGGAGAAGCGCTGCTAATGCTT
1 AGGGCTTTAGCGGCG-TTTTTGAAGAAGCGCCGCTAATGCTC
* * *
23660809 AGGGATTTAGCGGCGTTTTTTGAAAAAGCACCGCTAATGCTC
1 AGGGCTTTAGCGGCG-TTTTTGAAGAAGCGCCGCTAATGCTC
23660851 AG
1 AG
23660853 ATTTATCATA
Statistics
Matches: 250, Mismatches: 36, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
39 1 0.00
40 35 0.14
41 154 0.62
42 60 0.24
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (41 bp):
AGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
Found at i:23661820 original size:14 final size:15
Alignment explanation
Indices: 23661801--23661845 Score: 67
Period size: 14 Copynumber: 3.1 Consensus size: 15
23661791 AGGACAGTTA
23661801 TAAGGGTT-GGGGTT
1 TAAGGGTTAGGGGTT
23661815 TAAGGGTTAGGGG-T
1 TAAGGGTTAGGGGTT
*
23661829 TAGGGGTTAGGGGTT
1 TAAGGGTTAGGGGTT
23661844 TA
1 TA
23661846 TGGTTTATGT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 21 0.75
15 7 0.25
ACGTcount: A:0.18, C:0.00, G:0.49, T:0.33
Consensus pattern (15 bp):
TAAGGGTTAGGGGTT
Found at i:23661830 original size:7 final size:7
Alignment explanation
Indices: 23661804--23661843 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
23661794 ACAGTTATAA
23661804 GGGTT-G
1 GGGTTAG
*
23661810 GGGTTTAA
1 GGG-TTAG
23661818 GGGTTAG
1 GGGTTAG
23661825 GGGTTAG
1 GGGTTAG
23661832 GGGTTAG
1 GGGTTAG
23661839 GGGTT
1 GGGTT
23661844 TATGGTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
6 3 0.10
7 24 0.80
8 3 0.10
ACGTcount: A:0.12, C:0.00, G:0.55, T:0.33
Consensus pattern (7 bp):
GGGTTAG
Found at i:23661850 original size:14 final size:14
Alignment explanation
Indices: 23661803--23661850 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
23661793 GACAGTTATA
23661803 AGGGTT-GGGGTTT
1 AGGGTTAGGGGTTT
23661816 AAGGGTTAGGGG-TT
1 -AGGGTTAGGGGTTT
23661830 AGGGGTTAGGGGTTT
1 A-GGGTTAGGGGTTT
*
23661845 ATGGTT
1 AGGGTT
23661851 TATGTTTTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 1 0.03
14 22 0.73
15 7 0.23
ACGTcount: A:0.15, C:0.00, G:0.50, T:0.35
Consensus pattern (14 bp):
AGGGTTAGGGGTTT
Found at i:23662582 original size:31 final size:31
Alignment explanation
Indices: 23662544--23662608 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
23662534 TAAAAAATAG
23662544 TAATAATGAATGTTTTAAAAAATCACTTAAT
1 TAATAATGAATGTTTTAAAAAATCACTTAAT
23662575 TAATAATGAATGTTTTAAAAAATCACTTAAT
1 TAATAATGAATGTTTTAAAAAATCACTTAAT
23662606 TAA
1 TAA
23662609 AATTTTTTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.38
Consensus pattern (31 bp):
TAATAATGAATGTTTTAAAAAATCACTTAAT
Found at i:23664764 original size:23 final size:23
Alignment explanation
Indices: 23664730--23664973 Score: 207
Period size: 23 Copynumber: 10.7 Consensus size: 23
23664720 AAATGTTGTT
23664730 AATTGATA-TGTTTAAGTGCTGCA
1 AATTGA-AGTGTTTAAGTGCTGCA
*
23664753 AATTTAAGTGTTTAAGTGCTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
* * *
23664776 AATTGAAGTGCTT-AGTTGTTGGA
1 AATTGAAGTGTTTAAG-TGCTGCA
* *
23664799 AATTG-AGATGTTTTA-TCGCTG-T
1 AATTGAAG-TGTTTAAGT-GCTGCA
* * * * **
23664821 AATTGAGGTGTATAAATGTTGTT
1 AATTGAAGTGTTTAAGTGCTGCA
23664844 AATTGATA-TGTTTAAGTGCTGCA
1 AATTGA-AGTGTTTAAGTGCTGCA
* * * *
23664867 AATTTAAGTGTTTAAATGTTGTA
1 AATTGAAGTGTTTAAGTGCTGCA
23664890 AATTGAAGTGTTTAAGTGCTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
*
23664913 AATTGAAGTGTTT-AGTTGCTGAA
1 AATTGAAGTGTTTAAG-TGCTGCA
*
23664936 AATTG-AGATGTTAAAGTGCTGCA
1 AATTGAAG-TGTTTAAGTGCTGCA
23664959 AATTGAAGTGTTTAA
1 AATTGAAGTGTTTAA
23664974 ATTTAACTTG
Statistics
Matches: 177, Mismatches: 30, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
22 24 0.14
23 148 0.84
24 5 0.03
ACGTcount: A:0.31, C:0.06, G:0.24, T:0.40
Consensus pattern (23 bp):
AATTGAAGTGTTTAAGTGCTGCA
Found at i:23664811 original size:46 final size:46
Alignment explanation
Indices: 23664761--23664975 Score: 247
Period size: 46 Copynumber: 4.7 Consensus size: 46
23664751 CAAATTTAAG
* ** *
23664761 TGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGTTGGAAATTGAGA
1 TGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAGA
* * * * * *
23664807 TGTTTTA-TCGCTG-TAATTGAGGTGTATAAATGTTGTTAATTGATA
1 TGTTTAAGT-GCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAGA
*
23664852 TGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGTTGTAAATTGA-A
1 TGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAGA
** * *
23664897 GTGTTTAAGTGCTGCAAATTGAAGTGTTTAGTTGCTGAAAATTGAGA
1 -TGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAGA
*
23664944 TGTTAAAGTGCTGCAAATTGAAGTGTTTAAAT
1 TGTTTAAGTGCTGCAAATTGAAGTGTTTAAAT
23664976 TTAACTTGTT
Statistics
Matches: 140, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
45 35 0.25
46 104 0.74
47 1 0.01
ACGTcount: A:0.30, C:0.06, G:0.24, T:0.40
Consensus pattern (46 bp):
TGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAGA
Found at i:23664925 original size:114 final size:114
Alignment explanation
Indices: 23664711--23664918 Score: 346
Period size: 114 Copynumber: 1.8 Consensus size: 114
23664701 GGATAGTCTG
*
23664711 GAGGTGTATAAATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAGTGCTGCA
1 GAGGTGTATAAATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCA
* *
23664776 AATTGAAGTGCTTAGTTGTTGGAAATTGAGATGTTTTATCGCTGTAATT
66 AATTGAAGTGCTTAGTTGCTGCAAATTGAGATGTTTTATCGCTGTAATT
* *
23664825 GAGGTGTATAAATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGTTGTA
1 GAGGTGTATAAATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCA
*
23664890 AATTGAAGTGTTTAAG-TGCTGCAAATTGA
66 AATTGAAGTGCTT-AGTTGCTGCAAATTGA
23664919 AGTGTTTAGT
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
114 85 0.98
115 2 0.02
ACGTcount: A:0.30, C:0.05, G:0.24, T:0.41
Consensus pattern (114 bp):
GAGGTGTATAAATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCA
AATTGAAGTGCTTAGTTGCTGCAAATTGAGATGTTTTATCGCTGTAATT
Found at i:23665643 original size:43 final size:43
Alignment explanation
Indices: 23665576--23665867 Score: 415
Period size: 43 Copynumber: 6.8 Consensus size: 43
23665566 TTTTCGTGAC
* * *
23665576 CTTTAGTGGCGTTTATGGGGAAAGCGCCGCTAAAGGTCCTGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
* * * **
23665619 CTTTAGCGGTGTTTGTGGGAAAAGCTCCGCTAAATGTCCTAAT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
* *
23665662 CTTTAGCGGCGTTTGTGGGAAAAGCGACGCTAAAGGTCCTTGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
* * * *
23665705 CTTTAGCGGCGTTTGTGTGTAAAGCGCCACTAAAGGTTCTGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
* *
23665748 CTTTAGCGGCGTTTGTGAGTAAAGCGCCGCTAAAGGTCCTGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
* *
23665791 CTTTAGC-GCGTTTGTGGGTAAAGCGCCGCTAAAGGTCTTGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
23665833 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
23665868 TTAGCGACGT
Statistics
Matches: 222, Mismatches: 26, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
42 40 0.18
43 182 0.82
ACGTcount: A:0.20, C:0.19, G:0.32, T:0.29
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
Found at i:23665967 original size:22 final size:22
Alignment explanation
Indices: 23665939--23665981 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
23665929 TAGCGACGCT
* *
23665939 AAAAAGCGCCGCTAAATGCCTA
1 AAAAAGCACCGCTAAAAGCCTA
23665961 AAAAAGCACCGCTAAAAGCCT
1 AAAAAGCACCGCTAAAAGCCT
23665982 GTTTTGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.28, G:0.16, T:0.12
Consensus pattern (22 bp):
AAAAAGCACCGCTAAAAGCCTA
Found at i:23666062 original size:41 final size:40
Alignment explanation
Indices: 23666004--23666098 Score: 102
Period size: 41 Copynumber: 2.3 Consensus size: 40
23665994 TGTACATCCT
* * *
23666004 TACACATACTTTTATA-TTTAATAATTTTAAAATATATATA
1 TACATATATTTTTATATTTTAATAATTTT-AAATATATACA
* **
23666044 TACATATATTTTTCATATTTTCATAATTTTATGTATATACA
1 TACATATATTTTT-ATATTTTAATAATTTTAAATATATACA
23666085 TACATATATATTTT
1 TACATATAT-TTTT
23666099 TCTATATGTA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
40 11 0.24
41 20 0.43
42 15 0.33
ACGTcount: A:0.39, C:0.08, G:0.01, T:0.52
Consensus pattern (40 bp):
TACATATATTTTTATATTTTAATAATTTTAAATATATACA
Found at i:23666104 original size:22 final size:22
Alignment explanation
Indices: 23666079--23666121 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
23666069 ATTTTATGTA
23666079 TATACATACATATATATTTTTC
1 TATACATACATATATATTTTTC
** *
23666101 TATATGTATATATATATTTTT
1 TATACATACATATATATTTTT
23666122 ATATTTTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.56
Consensus pattern (22 bp):
TATACATACATATATATTTTTC
Found at i:23666305 original size:16 final size:16
Alignment explanation
Indices: 23666281--23666314 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
23666271 TTGATTTTTC
*
23666281 TTATATATTTGTCTTT
1 TTATATATTTATCTTT
*
23666297 TTATTTATTTATCTTT
1 TTATATATTTATCTTT
23666313 TT
1 TT
23666315 GTTTTTACTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.06, G:0.03, T:0.74
Consensus pattern (16 bp):
TTATATATTTATCTTT
Found at i:23678049 original size:17 final size:17
Alignment explanation
Indices: 23678029--23678061 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
23678019 CCCATTGTTT
23678029 TTTCTTTATTATTATTA
1 TTTCTTTATTATTATTA
23678046 TTTCTTTATTATTATT
1 TTTCTTTATTATTATT
23678062 TTATTATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTCTTTATTATTATTA
Found at i:23678056 original size:11 final size:11
Alignment explanation
Indices: 23678034--23678090 Score: 55
Period size: 11 Copynumber: 4.9 Consensus size: 11
23678024 TGTTTTTTCT
23678034 TTATTATTATTA
1 TTATT-TTATTA
23678046 TT-TCTTTATTA
1 TTAT-TTTATTA
23678057 TTATTTTATTA
1 TTATTTTATTA
23678068 TTATTGGTT-TTA
1 TTATT--TTATTA
23678080 TTGATTTTATT
1 TT-ATTTTATT
23678091 TATTGCTTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
11 23 0.59
12 11 0.28
13 5 0.13
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.70
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:23678056 original size:14 final size:14
Alignment explanation
Indices: 23678033--23678091 Score: 68
Period size: 14 Copynumber: 4.1 Consensus size: 14
23678023 TTGTTTTTTC
23678033 TTTATTATTATTAT
1 TTTATTATTATTAT
23678047 TTCT-TTATTATTAT
1 TT-TATTATTATTAT
*
23678061 TTTATTATTATTGGT
1 TTTATTATTATT-AT
23678076 TTTATTGATT-TTAT
1 TTTATT-ATTATTAT
23678090 TT
1 TT
23678092 ATTGCTTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
13 1 0.03
14 25 0.64
15 10 0.26
16 3 0.08
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (14 bp):
TTTATTATTATTAT
Found at i:23678092 original size:28 final size:26
Alignment explanation
Indices: 23678033--23678094 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 26
23678023 TTGTTTTTTC
23678033 TTTA-TTATTATTATTTCTTTATTAT
1 TTTATTTATTATTATTTCTTTATTAT
*
23678058 TAT-TTTATTATTATTGGT-TTTATTGAT
1 TTTATTTATTATTATT--TCTTTATT-AT
23678085 TTTATTTATT
1 TTTATTTATT
23678095 GCTTTATTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
25 13 0.43
26 6 0.20
27 5 0.17
28 6 0.20
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.71
Consensus pattern (26 bp):
TTTATTTATTATTATTTCTTTATTAT
Found at i:23678094 original size:13 final size:12
Alignment explanation
Indices: 23678076--23678109 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
23678066 TATTATTGGT
23678076 TTTATTGATTTTA
1 TTTATTG-TTTTA
*
23678089 TTTATTGCTTTA
1 TTTATTGTTTTA
23678101 TTTATTGTT
1 TTTATTGTT
23678110 GTTTATTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.18, C:0.03, G:0.09, T:0.71
Consensus pattern (12 bp):
TTTATTGTTTTA
Found at i:23679783 original size:12 final size:13
Alignment explanation
Indices: 23679740--23679776 Score: 58
Period size: 12 Copynumber: 2.8 Consensus size: 13
23679730 CCTATGTTAT
23679740 TTTTATCTTTTGAA
1 TTTTAT-TTTTGAA
23679754 TTTTA-TTTTGAA
1 TTTTATTTTTGAA
23679766 TTTTATTTTTG
1 TTTTATTTTTG
23679777 TTTTTATGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.55
13 5 0.23
14 5 0.23
ACGTcount: A:0.19, C:0.03, G:0.08, T:0.70
Consensus pattern (13 bp):
TTTTATTTTTGAA
Found at i:23689586 original size:22 final size:21
Alignment explanation
Indices: 23689561--23689615 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
23689551 TGTAAAAAAC
*
23689561 ATAAATATAAATAGACATGAA-A
1 ATAAATAAAAATAGA-AT-AAGA
*
23689583 ATAAATAAAAATGGAATAAGA
1 ATAAATAAAAATAGAATAAGA
23689604 ATAAATAAAAAT
1 ATAAATAAAAAT
23689616 TATATAAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 15 0.50
22 13 0.43
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.22
Consensus pattern (21 bp):
ATAAATAAAAATAGAATAAGA
Found at i:23690187 original size:19 final size:20
Alignment explanation
Indices: 23690151--23690211 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
23690141 CGGTGGTCAA
* **
23690151 AATTTTTTTTTTGTAAAATC
1 AATTTTTTCTTTAAAAAATC
23690171 AATTTTTTCTTTAAAAAATC
1 AATTTTTTCTTTAAAAAATC
23690191 -ATTACTTTTC-TT-AAAAATC
1 AATT--TTTTCTTTAAAAAATC
23690210 AA
1 AA
23690212 AATTTTATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
19 10 0.29
20 20 0.57
21 5 0.14
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.51
Consensus pattern (20 bp):
AATTTTTTCTTTAAAAAATC
Found at i:23690820 original size:3 final size:3
Alignment explanation
Indices: 23690812--23690886 Score: 96
Period size: 3 Copynumber: 24.7 Consensus size: 3
23690802 GTAAAAAATG
*
23690812 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TTTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* * * *
23690858 ATA ATA GTA ATA GTG ATG ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
23690887 TTGGGCCTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
3 61 0.97
4 2 0.03
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:23692358 original size:20 final size:20
Alignment explanation
Indices: 23692333--23692379 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
23692323 AATAAGAAAG
23692333 ATATAAATAATA-TCAATAT-A
1 ATATAAAT-ATAGT-AATATCA
23692353 ATATAAATATAGTAATATCA
1 ATATAAATATAGTAATATCA
23692373 ATATAAA
1 ATATAAA
23692380 AACAAATATC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (20 bp):
ATATAAATATAGTAATATCA
Found at i:23693913 original size:27 final size:28
Alignment explanation
Indices: 23693852--23693924 Score: 112
Period size: 27 Copynumber: 2.6 Consensus size: 28
23693842 CTTCGAATAA
* *
23693852 CTTCGTTCCAGTCCACTGTGTCTTGTTG
1 CTTCGATCCACTCCACTGTGTCTTGTTG
*
23693880 CTTCGATCCACTCCTCTGTGTC-TGTTG
1 CTTCGATCCACTCCACTGTGTCTTGTTG
23693907 CTTCGATCCACTCCACTG
1 CTTCGATCCACTCCACTG
23693925 CACTTCAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.10, C:0.34, G:0.18, T:0.38
Consensus pattern (28 bp):
CTTCGATCCACTCCACTGTGTCTTGTTG
Found at i:23694147 original size:44 final size:44
Alignment explanation
Indices: 23694002--23694401 Score: 301
Period size: 44 Copynumber: 9.2 Consensus size: 44
23693992 GTTTTTTCTG
* ** *
23694002 TCTGCTCCGCTACTGCTTAGGGAGATAAGA--CTTGA--TGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCTCCATCTTCGA
* * * **
23694042 TTTGCTCCACTACTGCTTAGGGAGATAGGA--CT-CGTGGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCTCCAT--CTTCGA
* *
23694085 TCTGCTTCACTACTGCTTAGGAAGATAAGATTCTCCATCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCTCCATCTTCGA
* ** *
23694129 TCTGCTCCACTACTGCTTAGGGAGATAGGATT-TAATATCTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCT-CCATCTTCGA
* ** **
23694173 CCTGCTCCACTACTGCTTAGGGAGATAAGA--CT-GGTGGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCTCCAT--CTTCGA
* * * *
23694216 TCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCATCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCTCCATCTTCGA
* ** **
23694260 TCTGCTCCACTACTGCTTAGGGAGATAGGA--CT-GGTGGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCTCCAT--CTTCGA
* * * *
23694303 TCTGCTTCACTACTGCTTAGGAAGATGAGATT-TGCCATTTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCT-CCATCTTCGA
23694347 TCTGCTCCACTACTGCTTAGGGAGATAAGA-TCTACCATCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTCT-CCATCTTCGA
*
23694391 CCTGCTCCACT
1 TCTGCTCCACT
23694402 GTAACCTCAG
Statistics
Matches: 279, Mismatches: 60, Indels: 38
0.74 0.16 0.10
Matches are distributed among these distances:
40 29 0.10
41 2 0.01
42 1 0.00
43 91 0.33
44 149 0.53
45 3 0.01
46 4 0.01
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.31
Consensus pattern (44 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATTCTCCATCTTCGA
Found at i:23694219 original size:87 final size:86
Alignment explanation
Indices: 23694002--23694376 Score: 361
Period size: 87 Copynumber: 4.3 Consensus size: 86
23693992 GTTTTTTCTG
* * * *
23694002 TCTGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGC---GATTTGCTCCACTACTGCTTAGGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGAC-TGATGCTTAAATCTGCTCCACTACTGCTTAGGA
* * *** **
23694064 AGAT-AGGACTCG-TGGCTTAAA
65 AGATGA-GATTTGCCATCTTTGA
* * * **
23694085 TCTGCTTCACTACTGCTTAGGAAGATAAGATTCTCCAT-CTTCGATCTGCTCCACTACTGCTTAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA--CT-GATGCTTAAATCTGCTCCACTACTGCTTAG
* ***
23694149 GGAGAT-AGGATTTAATATCTTTGA
63 GAAGATGA-GATTTGCCATCTTTGA
* * *
23694173 CCTGCTCCACTACTGCTTAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGAT-GCTTAAATCTGCTCCACTACTGCTTAGGA
* *
23694238 AGATGAGATTCGCCATCTTCGA
65 AGATGAGATTTGCCATCTTTGA
* * *
23694260 TCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGAT-GCTTAAATCTGCTCCACTACTGCTTAGGA
23694325 AGATGAGATTTGCCAT-TTTCGA
65 AGATGAGATTTGCCATCTTT-GA
23694347 TCTGCTCCACTACTGCTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
23694377 TCTACCATCT
Statistics
Matches: 250, Mismatches: 31, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
83 27 0.11
84 2 0.01
85 4 0.02
86 4 0.02
87 180 0.72
88 33 0.13
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (86 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTGATGCTTAAATCTGCTCCACTACTGCTTAGGAA
GATGAGATTTGCCATCTTTGA
Found at i:23694232 original size:131 final size:131
Alignment explanation
Indices: 23694044--23694289 Score: 456
Period size: 131 Copynumber: 1.9 Consensus size: 131
23694034 TGATGCGATT
*
23694044 TGCTCCACTACTGCTTAGGGAGATAGGACTCGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAG
1 TGCTCCACTACTGCTTAGGGAGATAAGACTCGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAG
*
23694109 ATAAGATTCTCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATTTAATATCTTTGAC
66 ATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATTTAATATCTTTGAC
23694174 C
131 C
*
23694175 TGCTCCACTACTGCTTAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAG
1 TGCTCCACTACTGCTTAGGGAGATAAGACTCGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAG
*
23694240 ATGAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGA
66 ATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGA
23694290 CTGGTGGCTT
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
131 111 1.00
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.30
Consensus pattern (131 bp):
TGCTCCACTACTGCTTAGGGAGATAAGACTCGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAG
ATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATTTAATATCTTTGAC
C
Found at i:23694350 original size:131 final size:131
Alignment explanation
Indices: 23694044--23694401 Score: 427
Period size: 131 Copynumber: 2.7 Consensus size: 131
23694034 TGATGCGATT
* * * *
23694044 TGCTCCACTACTGCTTAGGGAGATAGGACTCGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAG
1 TGCTCCACTACTGCTTAGGAAGATAAGACTGGTGCCTTAAATCTGCTTCACTACTGCTTAGGAAG
* * * **
23694109 ATAAGATTCTCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATTTAATATCTTTGAC
66 ATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAATAGCTTAAAC
23694174 C
131 C
* *
23694175 TGCTCCACTACTGCTTAGGGAGATAAGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAG
1 TGCTCCACTACTGCTTAGGAAGATAAGACTGGTGCCTTAAATCTGCTTCACTACTGCTTAGGAAG
* * ** * *
23694240 ATGAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAAT
66 ATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAATAGCTTAAAC
23694304 C
131 C
* * * ** *
23694305 TGCTTCACTACTGCTTAGGAAGATGAGA-T-TTGCCATTTTCGATCTGCTCCACTACTGCTTAGG
1 TGCTCCACTACTGCTTAGGAAGATAAGACTGGTGCC---TTAAATCTGCTTCACTACTGCTTAGG
* *
23694368 GAGATAAGA-TCTACCATCTTCGACCTGCTCCACT
63 AAGATAAGATTC-ACCATCTTCGATCTGCTCCACT
23694402 GTAACCTCAG
Statistics
Matches: 199, Mismatches: 24, Indels: 8
0.86 0.10 0.03
Matches are distributed among these distances:
128 3 0.02
129 1 0.01
130 34 0.17
131 161 0.81
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31
Consensus pattern (131 bp):
TGCTCCACTACTGCTTAGGAAGATAAGACTGGTGCCTTAAATCTGCTTCACTACTGCTTAGGAAG
ATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAATAGCTTAAAC
C
Found at i:23694574 original size:44 final size:43
Alignment explanation
Indices: 23694365--23695176 Score: 282
Period size: 44 Copynumber: 18.3 Consensus size: 43
23694355 ACTACTGCTT
* * * *
23694365 AGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTGTAACCTC
1 AGGGAGATAAGAT-TACTA-GTTCAATCTGCTCCACTGTAACCTC
* ** ** * * *
23694410 AGGGAGATAAGATCTGAAATTCTTCGGTTTACTCCACTGTAACCTT
1 AGGGAGATAAGAT-T--ACTAGTTCAATCTGCTCCACTGTAACCTC
* * * *
23694456 AGGGAGATAAGATT--T-GTTGCGATCTACTCTACTGTAACTTC
1 AGGGAGATAAGATTACTAGTT-CAATCTGCTCCACTGTAACCTC
* * * * * ** *
23694497 AGAGAGATGAGATCCT-TTATTTTAATCCACTCCACTGTAACTTC
1 AGGGAGATAAGAT--TACTAGTTCAATCTGCTCCACTGTAACCTC
*
23694541 AGGGAGATAGGATTACTAGTTCCAATCTGCTCCACTGTAACCTC
1 AGGGAGATAAGATTACTAGTT-CAATCTGCTCCACTGTAACCTC
* ** **
23694585 AGGGAGATAAGATCTGAAATTA-TTCGGTCCACTCCACTGTAACCTC
1 AGGGAGATAAGAT-T---ACTAGTTCAATCTGCTCCACTGTAACCTC
* * * *
23694631 AGGGAGATAAGACTTGCATA-TTCAACCTGCCCCACTGTAACTTC
1 AGGGAGATAAGA-TTAC-TAGTTCAATCTGCTCCACTGTAACCTC
* ** * * * *
23694675 AGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTC
1 AGGGAGATAAGATTACTAG-TTCAATCTGCTCCACTGTAACCTC
23694719 AGGGAGATAAGATCT-CTAGCTTCAATCTGCTCCACTGTAACCTC
1 AGGGAGATAAGAT-TACTAG-TTCAATCTGCTCCACTGTAACCTC
* * ** ** * *
23694763 AAGGAGATAAGAATTGAAATTCTTCGGTCTACTCCACTGTAATCTC
1 AGGGAGATAAG-ATT--ACTAGTTCAATCTGCTCCACTGTAACCTC
* * ** ** *
23694809 AGGGAGATAAGACCTAAAATTCTTCGGTCTACTCCACTGTAACCTC
1 AGGGAGATAAGA--T-TACTAGTTCAATCTGCTCCACTGTAACCTC
* * * *
23694855 AGGGAGATAAGACTTGCATA-TTCAACCTGCCCCACTGTAACTTC
1 AGGGAGATAAGA-TTAC-TAGTTCAATCTGCTCCACTGTAACCTC
* * * * * *
23694899 AGGGAAATAAGGTT-CGTGGCTTCGATCTGCTCCTCTGTAATCTC
1 AGGGAGATAAGATTAC-TAG-TTCAATCTGCTCCACTGTAACCTC
* ** ** * *
23694943 AGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAATCTC
1 AGGGAGATAAGAT-T--ACTAGTTCAATCTGCTCCACTGTAACCTC
* * * ** *
23694989 AGGGAGATAAGACTTGCATA-TTCAACCTGCCCCACTGTAATTTG
1 AGGGAGATAAGA-TTAC-TAGTTCAATCTGCTCCACTGTAACCTC
* ** * * ** *
23695033 AGGGAGATAAGGTTTGTGGCTTCGATCTGCTCTTCTGTAACTTC
1 AGGGAGATAAGATTACTAG-TTCAATCTGCTCCACTGTAACCTC
* * * * * * * *
23695077 AGAGAGATAGGATCCT-TTATTTTAATCCGCTCCACTATAACTTC
1 AGGGAGATAAGAT--TACTAGTTCAATCTGCTCCACTGTAACCTC
* * ** * *
23695121 AGGGAGATAGGA-TAGT-GTCTTTGATCTGCTCCGCTGTAATCTC
1 AGGGAGATAAGATTACTAG--TTCAATCTGCTCCACTGTAACCTC
23695164 AGGGAGATAAGAT
1 AGGGAGATAAGAT
23695177 CTATCATATT
Statistics
Matches: 582, Mismatches: 143, Indels: 85
0.72 0.18 0.10
Matches are distributed among these distances:
40 2 0.00
41 30 0.05
42 6 0.01
43 40 0.07
44 295 0.51
45 29 0.05
46 169 0.29
47 8 0.01
48 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
AGGGAGATAAGATTACTAGTTCAATCTGCTCCACTGTAACCTC
Found at i:23694972 original size:134 final size:134
Alignment explanation
Indices: 23694784--23695090 Score: 481
Period size: 134 Copynumber: 2.3 Consensus size: 134
23694774 AATTGAAATT
* * * *
23694784 CTTCGGTCTACTCCACTGTAATCTCAGGGAGATAAGACCTAAAATTCTTCGGTCTACTCCACTGT
1 CTTCGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTACTCCACTGT
23694849 AACCTCAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTGTAACTTCAGGGAAATAAGGTTC
66 AACCTCAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTGTAACTTCAGGGAAATAAGGTTC
23694914 GTGG
131 GTGG
*
23694918 CTTCGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGT
1 CTTCGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTACTCCACTGT
* * * * *
23694983 AATCTCAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTGTAATTTGAGGGAGATAAGGTTT
66 AACCTCAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTGTAACTTCAGGGAAATAAGGTTC
23695048 GTGG
131 GTGG
* * *
23695052 CTTCGATCTGCTCTTCTGTAA-CTTCAGAGAGATAGGATC
1 CTTCGATCTGCTCCTCTGTAATC-TCAGGGAGATAAGATC
23695091 CTTTATTTTA
Statistics
Matches: 159, Mismatches: 13, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
133 1 0.01
134 158 0.99
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (134 bp):
CTTCGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTACTCCACTGT
AACCTCAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTGTAACTTCAGGGAAATAAGGTTC
GTGG
Found at i:23694994 original size:358 final size:350
Alignment explanation
Indices: 23694365--23695176 Score: 987
Period size: 358 Copynumber: 2.3 Consensus size: 350
23694355 ACTACTGCTT
* * *
23694365 AGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
1 AGGGAGATAAGATCT-CTA-CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-TGAAAT
* * * * * *
23694430 TCTTCGGTTTACTCCACTGTAACCTTAGGGAGATAAGATTTGTTGCGATCTACTCTACTGTAACT
63 TCTTCGGTCTACTCCACTGTAATCTCAGGGAGATAAGATTTCTTGCGATCTACTCCACTGTAACC
* * * * *
23694495 TCAGAGAGATGAGATCCTTTATTTTAATCCACTCCACTGTAACTTCAGGGAGATAGGATTACTAG
128 TCAGAGAGATAAGA-CCTTCATTTCAATCCACCCCACTGTAACTTCAGGGAAATAGGATTACTAG
23694560 TTCCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTATTCGGTCCACTCCACTGT
192 TTCCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTATTCGGTCCACTCCACTGT
23694625 AACCTCAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTGTAACTTCAGGGAGATAAGGTTT
257 AACCTCAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTGTAACTTCAGGGAGATAAGGTTT
23694690 GTGGCTTCGATCTGCTCCTCTGTAA-TCTC
322 GTGGCTTCGATCTGCTCCTCTGTAACT-TC
*
23694719 AGGGAGATAAGATCTCTAGCTTCAATCTGCTCCACTGTAACCTCAAGGAGATAAGAATTGAAATT
1 AGGGAGATAAGATCTCTA-CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAG-ATTGAAATT
*
23694784 CTTCGGTCTACTCCACTGTAATCTCAGGGAGATAAGACCTAAAATTCTT-CGGTCTACTCCACTG
64 CTTCGGTCTACTCCACTGTAATCTCAGGGAGATAAGA--T----TTCTTGCGATCTACTCCACTG
* *
23694848 TAACCTCAGGGAGATAAGA-CTTGCATATTCAA-CCTGCCCCACTGTAACTTCAGGGAAATAAGG
123 TAACCTCAGAGAGATAAGACCTT-CAT-TTCAATCC-ACCCCACTGTAACTTCAGGGAAAT-AGG
* * * * * *
23694911 -TT-CGTGGCTT-CGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCT
184 ATTAC-TAG-TTCCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTATTCGGTCC
* * *
23694973 ACTCCACTGTAATCTCAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTGTAATTTGAGGGA
247 ACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTGTAACTTCAGGGA
*
23695038 GATAAGGTTTGTGGCTTCGATCTGCTCTTCTGTAACTTC
312 GATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAACTTC
* * * * * * * * * *
23695077 AGAGAGATAGGATCCTTTATTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGA-T--AGTGT
1 AGGGAGATAAGAT-CTCTACTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATTGAAAT-T
* * * *
23695139 CTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
64 CTTCGGTCTACTCCACTGTAATCTCAGGGAGATAAGAT
23695177 CTATCATATT
Statistics
Matches: 398, Mismatches: 44, Indels: 33
0.84 0.09 0.07
Matches are distributed among these distances:
353 77 0.19
354 19 0.05
355 35 0.09
356 4 0.01
357 6 0.02
358 243 0.61
359 14 0.04
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (350 bp):
AGGGAGATAAGATCTCTACTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATTGAAATTCT
TCGGTCTACTCCACTGTAATCTCAGGGAGATAAGATTTCTTGCGATCTACTCCACTGTAACCTCA
GAGAGATAAGACCTTCATTTCAATCCACCCCACTGTAACTTCAGGGAAATAGGATTACTAGTTCC
AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTATTCGGTCCACTCCACTGTAACC
TCAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTGTAACTTCAGGGAGATAAGGTTTGTGG
CTTCGATCTGCTCCTCTGTAACTTC
Found at i:23695026 original size:224 final size:220
Alignment explanation
Indices: 23694520--23695043 Score: 701
Period size: 224 Copynumber: 2.3 Consensus size: 220
23694510 CCTTTATTTT
* * * * *
23694520 AATCCACTCCACTGTAACTTCAGGGAGATAGGATTAC-TAGTTCCAATCTGCTCCACTGTAACCT
1 AATCTACTCCACTGTAAC-TCAGGGAGATAAGATTGCATA-TT-CAACCTGCTCCACTGTAATCT
* *
23694584 CAGGGAGATAAGATCTGAAATTATTCGGTCCACTCCACTGTAACCTCAGGGAGATAAGACTTGCA
63 CAGGGAGATAAGACCTAAAATTATTCGGTCCACTCCACTGTAACCTCAGGGAGATAAGACTTGCA
* *
23694649 TATTCAACCTGCCCCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTA
128 TATTCAACCTGCCCCACTGTAACTTCAGGGAAATAAGGTTCGTGGCTTCGATCTGCTCCTCTGTA
**
23694714 ATCTCAGGGAGATAAGATCTCTAGCTTC
193 ATCTCAGGGAGATAAGATCTAAAGCTTC
* * * ** *
23694742 AATCTGCTCCACTGTAACCTCAAGGAGATAAGAATTG-AAATTCTTCGGTCTACTCCACTGTAAT
1 AATCTACTCCACTGTAA-CTCAGGGAGATAAG-ATTGCATATTCAAC---CTGCTCCACTGTAAT
* *
23694806 CTCAGGGAGATAAGACCTAAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTG
61 CTCAGGGAGATAAGACCTAAAATTATTCGGTCCACTCCACTGTAACCTCAGGGAGATAAGACTTG
23694871 CATATTCAACCTGCCCCACTGTAACTTCAGGGAAATAAGGTTCGTGGCTTCGATCTGCTCCTCTG
126 CATATTCAACCTGCCCCACTGTAACTTCAGGGAAATAAGGTTCGTGGCTTCGATCTGCTCCTCTG
*
23694936 TAATCTCAGGGAGATAAGATCTGAAATTCTTC
191 TAATCTCAGGGAGATAAGATCT-AAA-GCTTC
** * * *
23694968 GGTCTACTCCACTGTAATCTCAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTGTAATTTG
1 AATCTACTCCACTGTAA-CTCAGGGAGATAAGA-TTGCATATTCAACCTGCTCCACTGTAATCTC
23695033 AGGGAGATAAG
64 AGGGAGATAAG
23695044 GTTTGTGGCT
Statistics
Matches: 260, Mismatches: 32, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
221 1 0.00
222 28 0.11
223 5 0.02
224 184 0.71
225 2 0.01
226 34 0.13
227 6 0.02
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (220 bp):
AATCTACTCCACTGTAACTCAGGGAGATAAGATTGCATATTCAACCTGCTCCACTGTAATCTCAG
GGAGATAAGACCTAAAATTATTCGGTCCACTCCACTGTAACCTCAGGGAGATAAGACTTGCATAT
TCAACCTGCCCCACTGTAACTTCAGGGAAATAAGGTTCGTGGCTTCGATCTGCTCCTCTGTAATC
TCAGGGAGATAAGATCTAAAGCTTC
Found at i:23696417 original size:7 final size:7
Alignment explanation
Indices: 23696405--23696458 Score: 67
Period size: 7 Copynumber: 8.0 Consensus size: 7
23696395 TTAGCCTCTC
23696405 CATTTTT
1 CATTTTT
23696412 CATTTTT
1 CATTTTT
23696419 CA-TTTT
1 CATTTTT
*
23696425 CTTTTTT
1 CATTTTT
*
23696432 CAATTTT
1 CATTTTT
*
23696439 CA-TTCT
1 CATTTTT
23696445 CATTTTT
1 CATTTTT
23696452 CATTTTT
1 CATTTTT
23696459 TCAGAGTGCC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
6 10 0.25
7 30 0.75
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:23696432 original size:20 final size:20
Alignment explanation
Indices: 23696405--23696458 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
23696395 TTAGCCTCTC
*
23696405 CATTTTTCATTTTTCATTTT
1 CATTTTTCATTTTTCATTCT
* *
23696425 CTTTTTTCAATTTTCATTCT
1 CATTTTTCATTTTTCATTCT
23696445 CATTTTTCATTTTT
1 CATTTTTCATTTTT
23696459 TCAGAGTGCC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.69
Consensus pattern (20 bp):
CATTTTTCATTTTTCATTCT
Found at i:23701588 original size:20 final size:20
Alignment explanation
Indices: 23701563--23701609 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
23701553 AATAAGAAAG
23701563 ATATAAATAATA-TCAATAT-A
1 ATATAAAT-ATAGT-AATATCA
23701583 ATATAAATATAGTAATATCA
1 ATATAAATATAGTAATATCA
23701603 ATATAAA
1 ATATAAA
23701610 AACAAATATC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (20 bp):
ATATAAATATAGTAATATCA
Done.