Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 81 of 205
Found at i:24004891 original size:28 final size:28
Alignment explanation
Indices: 24004800--24004891 Score: 79
Period size: 28 Copynumber: 3.4 Consensus size: 28
24004790 AATTATTGAG
24004800 ATTACTAATATAATTATAAATTT-AAAA-A
1 ATTACTAATATAA-TAT-AATTTAAAAATA
*
24004828 ATTAAC-AATATAATA-AA-TTAAAGATA
1 ATT-ACTAATATAATATAATTTAAAAATA
*
24004854 AGTTA-AAATATAATATAATTTAAAAATA
1 A-TTACTAATATAATATAATTTAAAAATA
*
24004882 AATACTAATA
1 ATTACTAATA
24004892 ATATTACAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 16
0.72 0.06 0.22
Matches are distributed among these distances:
24 2 0.04
25 5 0.10
26 12 0.23
27 8 0.15
28 23 0.44
29 2 0.04
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (28 bp):
ATTACTAATATAATATAATTTAAAAATA
Found at i:24006851 original size:50 final size:50
Alignment explanation
Indices: 24006796--24006927 Score: 151
Period size: 50 Copynumber: 2.6 Consensus size: 50
24006786 TATTGAGATT
*
24006796 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTG-GCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGC-ATGCGCACCGAG
* ** *
24006846 ATGAGAGGT-CCACCGTAAGACCATGTCTAAGACATGGCATGCGCACCGAT
1 ATGAGAGGTCCCA-TGTAAGACCATGTCTGGGACATGGCATGCGCACCGAG
** * *
24006896 ATGAGAACTCCTATGTAAGACCATATCTGGGA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGA
24006928 TATGACATTG
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
49 5 0.07
50 60 0.90
51 2 0.03
ACGTcount: A:0.29, C:0.23, G:0.28, T:0.20
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGCGCACCGAG
Found at i:24007206 original size:12 final size:12
Alignment explanation
Indices: 24007189--24007227 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
24007179 ATGAGTTATT
24007189 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
24007201 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
24007213 TAAGTGAGTAAG
1 TAAGTAAGCAAG
24007225 TAA
1 TAA
24007228 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:24014079 original size:43 final size:43
Alignment explanation
Indices: 24014032--24014122 Score: 173
Period size: 43 Copynumber: 2.1 Consensus size: 43
24014022 TCCAGAGTTA
24014032 GATCAGGGAAAGAAAAAAGGTTGAAGACAAAAGTGCTAGATTT
1 GATCAGGGAAAGAAAAAAGGTTGAAGACAAAAGTGCTAGATTT
*
24014075 GATCAGGGAAAGAAAAAAGGTTGAAGACTAAAGTGCTAGATTT
1 GATCAGGGAAAGAAAAAAGGTTGAAGACAAAAGTGCTAGATTT
24014118 GATCA
1 GATCA
24014123 TATTTTGTAC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.45, C:0.08, G:0.27, T:0.20
Consensus pattern (43 bp):
GATCAGGGAAAGAAAAAAGGTTGAAGACAAAAGTGCTAGATTT
Found at i:24014457 original size:50 final size:50
Alignment explanation
Indices: 24014383--24014527 Score: 155
Period size: 50 Copynumber: 2.9 Consensus size: 50
24014373 TATTGAGATT
* * ** * *
24014383 ATGAGAGGTCCCATTTAAGTCCATGTCTGGGACATGGGGTTGGCGCCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
** * *
24014433 ATGAGAGGTCCCCCGTAAGACCATGTCTGAGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
** * * *
24014483 ATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA
24014528 ATACAGAAAA
Statistics
Matches: 77, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 77 1.00
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
Found at i:24014793 original size:12 final size:12
Alignment explanation
Indices: 24014776--24014814 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
24014766 ATGAGTTATT
24014776 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
24014788 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
24014800 TAAGTGAGTAAG
1 TAAGTAAGCAAG
24014812 TAA
1 TAA
24014815 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:24016912 original size:29 final size:30
Alignment explanation
Indices: 24016853--24016914 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
24016843 TTGTTTTTCA
**
24016853 AAAATAACCCAAAAGAATTCATTGATTACG
1 AAAATAACCCAAAAGAATAAATTGATTACG
*
24016883 AAAATAACCCAAAGGAA-AAATT-ATATACG
1 AAAATAACCCAAAAGAATAAATTGAT-TACG
24016912 AAA
1 AAA
24016915 TGACCTGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 2 0.07
29 10 0.36
30 16 0.57
ACGTcount: A:0.56, C:0.15, G:0.10, T:0.19
Consensus pattern (30 bp):
AAAATAACCCAAAAGAATAAATTGATTACG
Found at i:24018017 original size:124 final size:124
Alignment explanation
Indices: 24017795--24018145 Score: 542
Period size: 124 Copynumber: 2.8 Consensus size: 124
24017785 TTATTTCGAG
* *
24017795 TTGACGTTTCTGAGCAAATAGTATAAAATCGGTTCTACCAGGATGCTATTTGAGAAGAAATTGCG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
* ***
24017860 AAATC-TCGCCCTCGTGGACGCGGTTTCATTACAGTAGGTCATGTAAGAAATAATTTTTT
66 AAATCGT-GCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTT
*
24017919 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATACTATTTGAGAAGAAATTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
*
24017984 AAATCGTGCCCTCGTGGACGCGATTTTGCTACAGTTGGTCATGTAAGAAATAATTTTTT
66 AAATCGTGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTT
* * ** * *
24018043 TTGACGTTTCTAAGCAAATAGTATAATATCGCTTCTATTAGAATGCTATTTGAGAAAAAATTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
* *
24018108 AAATCGCGCCTTCGTGGACGCGATTTTGCTACAGTAGG
66 AAATCGTGCCCTCGTGGACGCGATTTTGCTACAGTAGG
24018146 AAGTTTGGGT
Statistics
Matches: 208, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
124 207 1.00
125 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (124 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
AAATCGTGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTT
Found at i:24020643 original size:10 final size:10
Alignment explanation
Indices: 24020628--24020652 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
24020618 CAAATCTAAC
24020628 ATTATGTAAA
1 ATTATGTAAA
24020638 ATTATGTAAA
1 ATTATGTAAA
24020648 ATTAT
1 ATTAT
24020653 TAAGTCCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:24020736 original size:30 final size:30
Alignment explanation
Indices: 24020701--24020856 Score: 280
Period size: 30 Copynumber: 5.3 Consensus size: 30
24020691 AAATTATGTA
24020701 AAATTAGGTTAGGGTTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTTAGGGTTTTTAATT
24020731 AAATTAGGTTAGGG-TTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTTAGGGTTTTTAATT
*
24020760 AAATTAGGTTAGGTTTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTTAGGGTTTTTAATT
*
24020790 AAATTAGATTAGGGTTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTTAGGGTTTTTAATT
24020820 AAATTAGGTTAGGG-TTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTTAGGGTTTTTAATT
24020849 AAATTAGG
1 AAATTAGG
24020857 GTTTTTATTA
Statistics
Matches: 121, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
29 51 0.42
30 70 0.58
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.46
Consensus pattern (30 bp):
AAATTAGGTTAGGGTTTAGGGTTTTTAATT
Found at i:24020769 original size:59 final size:60
Alignment explanation
Indices: 24020701--24020856 Score: 280
Period size: 59 Copynumber: 2.6 Consensus size: 60
24020691 AAATTATGTA
24020701 AAATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGG-TTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATT
* *
24020760 AAATTAGGTTAGGTTTTAGGGTTTTTAATTAAATTAGATTAGGGTTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATT
24020820 AAATTAGGTTAGGG-TTAGGGTTTTTAATTAAATTAGG
1 AAATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGG
24020857 GTTTTTATTA
Statistics
Matches: 92, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
59 64 0.70
60 28 0.30
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.46
Consensus pattern (60 bp):
AAATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATT
Found at i:24021404 original size:18 final size:18
Alignment explanation
Indices: 24021377--24021411 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24021367 CGGAAAAGGA
* *
24021377 TACATGTAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
24021395 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
24021412 AAACACACCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.34, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:24021470 original size:36 final size:35
Alignment explanation
Indices: 24021430--24021500 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 35
24021420 CTGGCATCAT
* *
24021430 AGGGAAAGGCGGTTGCGTGGGTATCATCTGTTGAA
1 AGGGAAAGACAGTTGCGTGGGTATCATCTGTTGAA
24021465 NAGGGAAAGACAGTTGCGTGGGTATCATCTGTTGAA
1 -AGGGAAAGACAGTTGCGTGGGTATCATCTGTTGAA
24021501 TTACTGCGTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.25, C:0.11, G:0.37, T:0.25
Consensus pattern (35 bp):
AGGGAAAGACAGTTGCGTGGGTATCATCTGTTGAA
Found at i:24022109 original size:7 final size:7
Alignment explanation
Indices: 24022099--24022123 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
24022089 TTATATACAT
24022099 AATACTA
1 AATACTA
24022106 AATACTA
1 AATACTA
24022113 AATACTA
1 AATACTA
24022120 AATA
1 AATA
24022124 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:24023253 original size:30 final size:31
Alignment explanation
Indices: 24023201--24023258 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
24023191 GCCATTGATG
24023201 AAAATATAAAAAAATTTAAAATTATTTTTTA
1 AAAATATAAAAAAATTTAAAATTATTTTTTA
24023232 AAAATATAAAAAAATTT-AAATTATTTT
1 AAAATATAAAAAAATTTAAAATTATTTT
24023259 AAAAAATGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
30 10 0.37
31 17 0.63
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (31 bp):
AAAATATAAAAAAATTTAAAATTATTTTTTA
Found at i:24023321 original size:29 final size:28
Alignment explanation
Indices: 24023289--24023377 Score: 64
Period size: 29 Copynumber: 3.3 Consensus size: 28
24023279 AATTGAAATT
24023289 AAATATGGATTTGAGAGAATTTTGGAAGG
1 AAATATGGATTTGAGAGAA-TTTGGAAGG
* * **
24023318 AAAT-T-GA---GAG-GAAATTGAAATT
1 AAATATGGATTTGAGAGAATTTGGAAGG
*
24023340 AAATATGGGTTTGAGAGAAATTTGGAAGG
1 AAATATGGATTTGAGAG-AATTTGGAAGG
*
24023369 AAATTTGGA
1 AAATATGGA
24023378 AGGAAATTGA
Statistics
Matches: 42, Mismatches: 11, Indels: 14
0.63 0.16 0.21
Matches are distributed among these distances:
22 9 0.21
23 4 0.10
24 4 0.10
27 5 0.12
28 2 0.05
29 18 0.43
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (28 bp):
AAATATGGATTTGAGAGAATTTGGAAGG
Found at i:24023322 original size:51 final size:51
Alignment explanation
Indices: 24023266--24023387 Score: 192
Period size: 51 Copynumber: 2.4 Consensus size: 51
24023256 TTTAAAAAAT
* *
24023266 GAAATTGAGGGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAAATTTGGAAG
*
24023317 GAAATTGAGAGGAAATTGAAATTAAATATGGGTTTGAGAGAAATTTGGAAG
1 GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAAATTTGGAAG
24023368 GAAATTTG-GAAGGAAATTGA
1 GAAA-TTGAG-AGGAAATTGA
24023388 GAGGATTAGA
Statistics
Matches: 66, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
51 53 0.80
52 13 0.20
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.28
Consensus pattern (51 bp):
GAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAAATTTGGAAG
Found at i:24023373 original size:12 final size:12
Alignment explanation
Indices: 24023356--24023385 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
24023346 GGGTTTGAGA
24023356 GAAATTTGGAAG
1 GAAATTTGGAAG
24023368 GAAATTTGGAAG
1 GAAATTTGGAAG
24023380 GAAATT
1 GAAATT
24023386 GAGAGGATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (12 bp):
GAAATTTGGAAG
Found at i:24023851 original size:17 final size:17
Alignment explanation
Indices: 24023829--24023865 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
24023819 TCACAATTTA
24023829 AAAAAAATATTTAAAGG
1 AAAAAAATATTTAAAGG
* *
24023846 AAAAAATTATTTAATGG
1 AAAAAAATATTTAAAGG
24023863 AAA
1 AAA
24023866 TTAAAGGTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.11, T:0.27
Consensus pattern (17 bp):
AAAAAAATATTTAAAGG
Found at i:24024590 original size:11 final size:11
Alignment explanation
Indices: 24024576--24024655 Score: 60
Period size: 11 Copynumber: 7.4 Consensus size: 11
24024566 ATTTTTTTAA
24024576 TTTTAAAATAT
1 TTTTAAAATAT
24024587 TTTTAAAATACTT
1 TTTTAAAATA--T
** *
24024600 TTTTTTATTAT
1 TTTTAAAATAT
*
24024611 TTTT----TAA
1 TTTTAAAATAT
24024618 TTTTAAAATAT
1 TTTTAAAATAT
*
24024629 TTTTAAAATGT
1 TTTTAAAATAT
24024640 TTTTAAAATACT
1 TTTTAAAATA-T
24024652 TTTT
1 TTTT
24024656 TTAATTTTTA
Statistics
Matches: 55, Mismatches: 7, Indels: 13
0.73 0.09 0.17
Matches are distributed among these distances:
7 6 0.11
11 36 0.65
12 5 0.09
13 8 0.15
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:24024616 original size:42 final size:41
Alignment explanation
Indices: 24024559--24024637 Score: 140
Period size: 42 Copynumber: 1.9 Consensus size: 41
24024549 AATATATTTA
24024559 TTTTTTAATTTTTTTAATTTTAAAATATTTTTAAAATACTT
1 TTTTTTAATTTTTTTAATTTTAAAATATTTTTAAAATACTT
*
24024600 TTTTTTATTATTTTTTAATTTTAAAATATTTTTAAAAT
1 TTTTTTAAT-TTTTTTAATTTTAAAATATTTTTAAAAT
24024638 GTTTTTAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
41 8 0.22
42 28 0.78
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (41 bp):
TTTTTTAATTTTTTTAATTTTAAAATATTTTTAAAATACTT
Found at i:24024656 original size:42 final size:41
Alignment explanation
Indices: 24024567--24024670 Score: 129
Period size: 42 Copynumber: 2.5 Consensus size: 41
24024557 TATTTTTTAA
** *
24024567 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTTAT
1 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTAATAC
*
24024608 TATTTTTTAATTTTAAAATATTTTTAAAAT-GTTTTTAAAATAC
1 T-TTTTTTAATTTTAAAATATTTTTAAAATACTTTTT--AATAC
24024651 TTTTTTTAATTTTTAAAATA
1 TTTTTTTAA-TTTTAAAATA
24024671 AATTTTTGGT
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
41 6 0.11
42 36 0.65
43 13 0.24
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.62
Consensus pattern (41 bp):
TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTAATAC
Found at i:24024676 original size:21 final size:20
Alignment explanation
Indices: 24024609--24024677 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 20
24024599 TTTTTTTATT
24024609 ATTTTTTAA-TTTTAAAAT-
1 ATTTTTTAATTTTTAAAATA
*
24024627 ATTTTTAAAATGTTTTTAAAATA
1 ATTTTT-TAA--TTTTTAAAATA
*
24024650 CTTTTTTTAATTTTTAAAATAA
1 -ATTTTTTAATTTTTAAAAT-A
24024672 ATTTTT
1 ATTTTT
24024678 GGTATTTATT
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
18 6 0.15
19 2 0.05
21 15 0.38
22 10 0.25
23 2 0.05
24 5 0.12
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (20 bp):
ATTTTTTAATTTTTAAAATA
Found at i:24025835 original size:36 final size:36
Alignment explanation
Indices: 24025795--24025870 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
24025785 TGAAACATAG
*
24025795 AAAATATATAAAAGTATGT-GTATATATATAT-TTATA
1 AAAAT-TA-AAAAATATGTAGTATATATATATATTATA
* *
24025831 AAAATTAAAAAATGTGTACGTATATGTATATATTATA
1 AAAATTAAAAAATATGTA-GTATATATATATATTATA
24025868 AAA
1 AAA
24025871 CGTATGTATG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 8 0.24
35 2 0.06
36 16 0.47
37 8 0.24
ACGTcount: A:0.51, C:0.01, G:0.09, T:0.38
Consensus pattern (36 bp):
AAAATTAAAAAATATGTAGTATATATATATATTATA
Found at i:24026444 original size:23 final size:22
Alignment explanation
Indices: 24026400--24026457 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
24026390 AAAGGGTATC
* * *
24026400 TACAAATTAAATC-TCTAGGAT
1 TACAAATCATATCTTCTAAGAT
24026421 TACAAAGTCATATCTTCTAAGAT
1 TACAAA-TCATATCTTCTAAGAT
* *
24026444 TGCATATCATATCT
1 TACAAATCATATCT
24026458 AAGATTGCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 6 0.20
22 13 0.43
23 11 0.37
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:24026759 original size:24 final size:24
Alignment explanation
Indices: 24026727--24026773 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
24026717 TGCTAATAAG
24026727 TAATAACCTCCCTTTGTTGAATGC
1 TAATAACCTCCCTTTGTTGAATGC
*
24026751 TAATTACCTCCCTTTGTTGAATG
1 TAATAACCTCCCTTTGTTGAATG
24026774 TTATTTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.40
Consensus pattern (24 bp):
TAATAACCTCCCTTTGTTGAATGC
Found at i:24031298 original size:21 final size:20
Alignment explanation
Indices: 24031255--24031294 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
24031245 ATTGAAGTAC
24031255 CATATCTAATTACCAAAGGG
1 CATATCTAATTACCAAAGGG
24031275 CATATCTAATTACCAAAGGG
1 CATATCTAATTACCAAAGGG
24031295 GCATTGATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (20 bp):
CATATCTAATTACCAAAGGG
Found at i:24033881 original size:26 final size:26
Alignment explanation
Indices: 24033845--24033924 Score: 124
Period size: 26 Copynumber: 3.1 Consensus size: 26
24033835 AAGACTCCAC
24033845 AAGGACTATTCCATGTATGAGTCCGT
1 AAGGACTATTCCATGTATGAGTCCGT
*
24033871 AAGGACTATTCCATGTATGAGTCTGT
1 AAGGACTATTCCATGTATGAGTCCGT
* * *
24033897 AAGGACTATTTCAAGTATTAGTCCGT
1 AAGGACTATTCCATGTATGAGTCCGT
24033923 AA
1 AA
24033925 AGACCACCAT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (26 bp):
AAGGACTATTCCATGTATGAGTCCGT
Found at i:24035882 original size:26 final size:26
Alignment explanation
Indices: 24035846--24035910 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
24035836 ACATATTTTT
**
24035846 TCAAAATTTTA-CTTGGGGCAAAATTG
1 TCAAAATTTTATC-TGGGGCAAAATCA
*
24035872 TCAAAATTTTATCTGGGGTAAAATCA
1 TCAAAATTTTATCTGGGGCAAAATCA
*
24035898 TCAAAATATTATC
1 TCAAAATTTTATC
24035911 GAGGGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 33 0.97
27 1 0.03
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (26 bp):
TCAAAATTTTATCTGGGGCAAAATCA
Found at i:24035916 original size:26 final size:26
Alignment explanation
Indices: 24035846--24035921 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 26
24035836 ACATATTTTT
* * **
24035846 TCAAAATTTTA-CTTGGGGCAAAATTG
1 TCAAAATATTATC-TGGGGTAAAATCA
*
24035872 TCAAAATTTTATCTGGGGTAAAATCA
1 TCAAAATATTATCTGGGGTAAAATCA
24035898 TCAAAATATTATC-GAGGGTAAAAT
1 TCAAAATATTATCTG-GGGTAAAAT
24035922 AGGGATGAGA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.02
26 42 0.95
27 1 0.02
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (26 bp):
TCAAAATATTATCTGGGGTAAAATCA
Found at i:24039475 original size:39 final size:38
Alignment explanation
Indices: 24039431--24039534 Score: 100
Period size: 38 Copynumber: 2.7 Consensus size: 38
24039421 ACTTAGCATA
* * * *
24039431 CAAGCATATATCACCATACTCATATAATCCCATGACATT
1 CAAGCATATATCACAATACTC-TAAAATCACATAACATT
* * * *
24039470 TAAGCATGTGTCATAATACTCTAAAATCACATAACATT
1 CAAGCATATATCACAATACTCTAAAATCACATAACATT
* * *
24039508 CAAGTATATATCACAATATTCAAAAAT
1 CAAGCATATATCACAATACTCTAAAAT
24039535 ATGTTTAGGG
Statistics
Matches: 50, Mismatches: 15, Indels: 1
0.76 0.23 0.02
Matches are distributed among these distances:
38 34 0.68
39 16 0.32
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30
Consensus pattern (38 bp):
CAAGCATATATCACAATACTCTAAAATCACATAACATT
Found at i:24041202 original size:122 final size:122
Alignment explanation
Indices: 24040985--24041230 Score: 492
Period size: 122 Copynumber: 2.0 Consensus size: 122
24040975 CAGGCTTTTA
24040985 GCGGCGTTTTTTTAGGCCAGCGCCGCTAGAAGCGTCGCAAAAAATGTTGCTATTAACAATGTCGC
1 GCGGCGTTTTTTTAGGCCAGCGCCGCTAGAAGCGTCGCAAAAAATGTTGCTATTAACAATGTCGC
24041050 TAACGTTTGCTGCATTTTTAAAAATAAACGCCGCTATAGATCATGACTTATAGCAGT
66 TAACGTTTGCTGCATTTTTAAAAATAAACGCCGCTATAGATCATGACTTATAGCAGT
24041107 GCGGCGTTTTTTTAGGCCAGCGCCGCTAGAAGCGTCGCAAAAAATGTTGCTATTAACAATGTCGC
1 GCGGCGTTTTTTTAGGCCAGCGCCGCTAGAAGCGTCGCAAAAAATGTTGCTATTAACAATGTCGC
24041172 TAACGTTTGCTGCATTTTTAAAAATAAACGCCGCTATAGATCATGACTTATAGCAGT
66 TAACGTTTGCTGCATTTTTAAAAATAAACGCCGCTATAGATCATGACTTATAGCAGT
24041229 GC
1 GC
24041231 TTTTCCCACA
Statistics
Matches: 124, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
122 124 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (122 bp):
GCGGCGTTTTTTTAGGCCAGCGCCGCTAGAAGCGTCGCAAAAAATGTTGCTATTAACAATGTCGC
TAACGTTTGCTGCATTTTTAAAAATAAACGCCGCTATAGATCATGACTTATAGCAGT
Found at i:24041258 original size:43 final size:43
Alignment explanation
Indices: 24041197--24041465 Score: 299
Period size: 43 Copynumber: 6.3 Consensus size: 43
24041187 TTTTAAAAAT
* * *
24041197 AAACGCCGCTATAGATCATGACTTATAGCAGTGCTTTTCCCAC
1 AAACGCCGCTATAGAACATGACTTTTAGCGGTGCTTTTCCCAC
* *
24041240 AAACGCCGCTATAGATCATGACTTTTAGCGATGCTTTTCCCAC
1 AAACGCCGCTATAGAACATGACTTTTAGCGGTGCTTTTCCCAC
* * *
24041283 AAACGCCGTTATAAAACATGACTTTTAGCGGTACTTTTCCCAC
1 AAACGCCGCTATAGAACATGACTTTTAGCGGTGCTTTTCCCAC
* * * *
24041326 AAACGCTGCTATAGATCATGACTTTTAGCGGCGCTTTACCCAC
1 AAACGCCGCTATAGAACATGACTTTTAGCGGTGCTTTTCCCAC
* * * * * *
24041369 AAATGCCGCTAAAGAACATGACCTTTAGCAGCGC-TTTACCACC
1 AAACGCCGCTATAGAACATGACTTTTAGCGGTGCTTTTCCCA-C
* * * * *
24041412 AAACACTGCTAAAGAACATGA-TCTTTAGCGGTGCTTTACCCAA
1 AAACGCCGCTATAGAACATGACT-TTTAGCGGTGCTTTTCCCAC
24041455 AAACGCCGCTA
1 AAACGCCGCTA
24041466 AAAGTACTGT
Statistics
Matches: 189, Mismatches: 34, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
42 5 0.03
43 179 0.95
44 5 0.03
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTATAGAACATGACTTTTAGCGGTGCTTTTCCCAC
Found at i:24044805 original size:40 final size:40
Alignment explanation
Indices: 24044750--24044826 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
24044740 ATATCAAAAC
* *
24044750 TTCAATATTTAATATGTAAGCAATTATCAAAAATCAACAT
1 TTCAATATTTAATATGCAAGAAATTATCAAAAATCAACAT
24044790 TTCAATAATTT-ATATGCAAGAAATTATCAAAAATCAA
1 TTCAAT-ATTTAATATGCAAGAAATTATCAAAAATCAA
24044827 TCTTACAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 30 0.88
41 4 0.12
ACGTcount: A:0.49, C:0.12, G:0.05, T:0.34
Consensus pattern (40 bp):
TTCAATATTTAATATGCAAGAAATTATCAAAAATCAACAT
Found at i:24044842 original size:40 final size:40
Alignment explanation
Indices: 24044756--24044842 Score: 104
Period size: 40 Copynumber: 2.1 Consensus size: 40
24044746 AAACTTCAAT
* * * *
24044756 ATTTAATATGTAAGCAATTATCAAAAATCAACATTTCAATA
1 ATTT-ATATGCAAGAAATTATCAAAAATCAACATTACAACA
24044797 ATTTATATGCAAGAAATTATCAAAAATCAATC-TTACAACA
1 ATTTATATGCAAGAAATTATCAAAAATCAA-CATTACAACA
*
24044837 GTTTAT
1 ATTTAT
24044843 GTGAAACAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
40 35 0.88
41 5 0.12
ACGTcount: A:0.47, C:0.13, G:0.06, T:0.34
Consensus pattern (40 bp):
ATTTATATGCAAGAAATTATCAAAAATCAACATTACAACA
Found at i:24044998 original size:86 final size:85
Alignment explanation
Indices: 24044901--24045179 Score: 380
Period size: 86 Copynumber: 3.2 Consensus size: 85
24044891 GGCAATAGGG
* * *
24044901 CTAAATCTTCAATTTCTATAA-AGATTTATATGCAACAAATTAGCAAAAATCAATGGTTCAAGTT
1 CTAAATTTTCAATTT-TATAACA-ACTTATATGCAACAAATTAGAAAAAATCAATGGTTCAAGTT
* * *
24044965 CATGTATTTACCAAAAATCAGA
64 CATGCATTTACCAACAACCAGA
* *
24044987 CTAATTTTTCAATATTTATAACAACTTATATGCAACAAATTAGAAAAAATAAATGGTTCAAGTTC
1 CTAAATTTTCAAT-TTTATAACAACTTATATGCAACAAATTAGAAAAAATCAATGGTTCAAGTTC
24045052 ATGCATTTACCAACAACCAGA
65 ATGCATTTACCAACAACCAGA
* * **
24045073 CTAAATTTTCAATTTTTATAACAACTCATGTGCAACAAATTAGAAAAAATCAACAGTTCAAGTTC
1 CTAAATTTTCAA-TTTTATAACAACTTATATGCAACAAATTAGAAAAAATCAATGGTTCAAGTTC
*
24045138 ATGCATTCACCAACAACCAGA
65 ATGCATTTACCAACAACCAGA
*
24045159 CCAAATTTTCAACTTTTATAA
1 CTAAATTTTCAA-TTTTATAA
24045180 AGTAGAAGGA
Statistics
Matches: 173, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
86 169 0.98
87 4 0.02
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.32
Consensus pattern (85 bp):
CTAAATTTTCAATTTTATAACAACTTATATGCAACAAATTAGAAAAAATCAATGGTTCAAGTTCA
TGCATTTACCAACAACCAGA
Found at i:24046524 original size:15 final size:15
Alignment explanation
Indices: 24046485--24046532 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
24046475 CTTAAACCAC
* *
24046485 AACCCTTAAACCATA
1 AACCCATAATCCATA
* *
24046500 AA-CTATAATCCCTA
1 AACCCATAATCCATA
24046514 AACCCATAATCCATA
1 AACCCATAATCCATA
24046529 AACC
1 AACC
24046533 TTAAGATAGT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 10 0.38
15 16 0.62
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (15 bp):
AACCCATAATCCATA
Found at i:24076968 original size:32 final size:31
Alignment explanation
Indices: 24076908--24076968 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
24076898 GTTTAGTTAA
* *
24076908 TTATTTTTATTATTGTTATTATTATTTTATT
1 TTATTTTAATTATTGTTAATATTATTTTATT
*
24076939 TTATTTTAATTAGTTGTTAATATTGTTTTA
1 TTATTTTAATTA-TTGTTAATATTATTTTA
24076969 GATTTTGCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 11 0.42
32 15 0.58
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.69
Consensus pattern (31 bp):
TTATTTTAATTATTGTTAATATTATTTTATT
Found at i:24082855 original size:41 final size:41
Alignment explanation
Indices: 24082742--24082863 Score: 103
Period size: 41 Copynumber: 3.1 Consensus size: 41
24082732 CCTCATTGGA
* * *
24082742 TAATTCAAAGTAATAAATTGACAACC-AGTGTCTCATCG-GT
1 TAATTCGAAGTAGTAAATTGAC-ACCTAGTGTCTCATCGAAT
** * * *
24082782 TAAACCG-A--AGTAAATTGGCA-CTCAATGCCTCATCGAAT
1 TAATTCGAAGTAGTAAATTGACACCT-AGTGTCTCATCGAAT
*
24082820 TAATTCGAAGTAGTAAATTGACACCTAGTGTCTCATCGACT
1 TAATTCGAAGTAGTAAATTGACACCTAGTGTCTCATCGAAT
24082861 TAA
1 TAA
24082864 AGTCGAAGAA
Statistics
Matches: 61, Mismatches: 14, Indels: 13
0.69 0.16 0.15
Matches are distributed among these distances:
35 1 0.02
36 1 0.02
37 19 0.31
38 6 0.10
39 2 0.03
40 4 0.07
41 26 0.43
42 2 0.03
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (41 bp):
TAATTCGAAGTAGTAAATTGACACCTAGTGTCTCATCGAAT
Found at i:24083398 original size:18 final size:19
Alignment explanation
Indices: 24083372--24083407 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
24083362 TAGGCTAGAT
*
24083372 TTAACTCCCT-AATTTCAC
1 TTAAATCCCTAAATTTCAC
24083390 TTAAATCCCTAAATTTCA
1 TTAAATCCCTAAATTTCA
24083408 AAAATTTCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.33, C:0.28, G:0.00, T:0.39
Consensus pattern (19 bp):
TTAAATCCCTAAATTTCAC
Found at i:24083439 original size:30 final size:28
Alignment explanation
Indices: 24083395--24083451 Score: 69
Period size: 30 Copynumber: 2.0 Consensus size: 28
24083385 TTCACTTAAA
*
24083395 TCCCTAAATTTCAAAAATTTCACAATTTAG
1 TCCCTAAATCTC-AAAATTT-ACAATTTAG
* *
24083425 TCCCTATATCTCAAAGTTTACAATTTA
1 TCCCTAAATCTCAAAATTTACAATTTA
24083452 TTCTACAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 8 0.33
29 6 0.25
30 10 0.42
ACGTcount: A:0.37, C:0.21, G:0.04, T:0.39
Consensus pattern (28 bp):
TCCCTAAATCTCAAAATTTACAATTTAG
Found at i:24088127 original size:33 final size:32
Alignment explanation
Indices: 24088079--24088163 Score: 107
Period size: 33 Copynumber: 2.6 Consensus size: 32
24088069 ACCCGAGCCT
*
24088079 GGCCTAATTATTTTGCCCAAGCCCATGTTTCG
1 GGCCTAATAATTTTGCCCAAGCCCATGTTTCG
* * * *
24088111 TGCTTAATAATTTTTGCTCAAGCCCATTTTTCG
1 GGCCTAATAA-TTTTGCCCAAGCCCATGTTTCG
*
24088144 GGCCTAATGATTTTGCCCAA
1 GGCCTAATAATTTTGCCCAA
24088164 ACCCTCCCAA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
32 16 0.37
33 27 0.63
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (32 bp):
GGCCTAATAATTTTGCCCAAGCCCATGTTTCG
Found at i:24106800 original size:41 final size:41
Alignment explanation
Indices: 24106727--24106806 Score: 99
Period size: 41 Copynumber: 2.0 Consensus size: 41
24106717 TTGTTGAGGA
* *
24106727 ACTTTAATGTGCTCTTGGAGCACATTTTTGGCTATTATGGG
1 ACTTTAATGTGCTCTTGAAGCACATTTATGGCTATTATGGG
* * *
24106768 ACTTTAATGTGTTGCTT-AAGCATATTTATGGCTTTTATG
1 ACTTTAATGTGCT-CTTGAAGCACATTTATGGCTATTATG
24106807 AAGCCTTGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
41 30 0.91
42 3 0.09
ACGTcount: A:0.21, C:0.12, G:0.21, T:0.45
Consensus pattern (41 bp):
ACTTTAATGTGCTCTTGAAGCACATTTATGGCTATTATGGG
Found at i:24110296 original size:37 final size:37
Alignment explanation
Indices: 24110219--24110289 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
24110209 TAACATTGAA
* *
24110219 ATTTACTCAATTGAGCTTCATTTAGTATAATGGTACG
1 ATTTACTCAATTGAGCTTCATTCAGTATAATAGTACG
**
24110256 ATTTACTCGGTTGAGCTTCATTCAGTATAATAGT
1 ATTTACTCAATTGAGCTTCATTCAGTATAATAGT
24110290 CAGATTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (37 bp):
ATTTACTCAATTGAGCTTCATTCAGTATAATAGTACG
Found at i:24115468 original size:34 final size:34
Alignment explanation
Indices: 24115422--24115609 Score: 205
Period size: 34 Copynumber: 5.5 Consensus size: 34
24115412 ACACAGTTAA
* * * *
24115422 CCATCCAACACACCAGATTCTTGTATGAGCTAAT
1 CCATCCAGCACACCAAATGCTCGTATGAGCTAAT
* * *
24115456 CCATCCAGCACACCAAATGTTCATATAAGCTAAT
1 CCATCCAGCACACCAAATGCTCGTATGAGCTAAT
* *
24115490 CAATCCAGCACAGCAAATGCTCGTATGAGCTAAT
1 CCATCCAGCACACCAAATGCTCGTATGAGCTAAT
* * * *
24115524 TCATCTAGCACAGCAAATGCTCATATGAGCTAAT
1 CCATCCAGCACACCAAATGCTCGTATGAGCTAAT
* * * *
24115558 CCATCCAACATACCAAATGCTCGTATTAACTAAT
1 CCATCCAGCACACCAAATGCTCGTATGAGCTAAT
* *
24115592 CTATCTAGCACACCAAAT
1 CCATCCAGCACACCAAAT
24115610 ACCACTGTAA
Statistics
Matches: 126, Mismatches: 28, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 126 1.00
ACGTcount: A:0.36, C:0.28, G:0.11, T:0.24
Consensus pattern (34 bp):
CCATCCAGCACACCAAATGCTCGTATGAGCTAAT
Found at i:24115535 original size:68 final size:68
Alignment explanation
Indices: 24115424--24115609 Score: 230
Period size: 68 Copynumber: 2.7 Consensus size: 68
24115414 ACAGTTAACC
* * * * * *
24115424 ATCCAACACACCAGATTCTTGTATGAGCTAATCCATCCAGCACACCAAATGTTCATATAAGCTAA
1 ATCCAACACACCAAATGCTCGTATGAGCTAATTCATCTAGCACACCAAATGCTCATATAAGCTAA
24115489 TCA
66 TCA
* * * *
24115492 ATCCAGCACAGCAAATGCTCGTATGAGCTAATTCATCTAGCACAGCAAATGCTCATATGAGCTAA
1 ATCCAACACACCAAATGCTCGTATGAGCTAATTCATCTAGCACACCAAATGCTCATATAAGCTAA
*
24115557 TCC
66 TCA
* * *
24115560 ATCCAACATACCAAATGCTCGTATTAACTAA-TCTATCTAGCACACCAAAT
1 ATCCAACACACCAAATGCTCGTATGAGCTAATTC-ATCTAGCACACCAAAT
24115610 ACCACTGTAA
Statistics
Matches: 100, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
67 2 0.02
68 98 0.98
ACGTcount: A:0.37, C:0.27, G:0.11, T:0.25
Consensus pattern (68 bp):
ATCCAACACACCAAATGCTCGTATGAGCTAATTCATCTAGCACACCAAATGCTCATATAAGCTAA
TCA
Found at i:24118301 original size:26 final size:25
Alignment explanation
Indices: 24118271--24118345 Score: 78
Period size: 26 Copynumber: 2.9 Consensus size: 25
24118261 TTTCTCATCC
* *
24118271 CAATTTTACCCTAGTAAAGTTTTTGG
1 CAATTTTACCCTAGTAAA-ATTTTGA
*
24118297 CAATTTTACCCTTGGTAAAATTTTGA
1 CAATTTTACCC-TAGTAAAATTTTGA
* *
24118323 CGATTTTACCCTCGATAAAATTT
1 CAATTTTACCCTAG-TAAAATTT
24118346 CGAGAAAGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.05
26 34 0.81
27 6 0.14
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.41
Consensus pattern (25 bp):
CAATTTTACCCTAGTAAAATTTTGA
Found at i:24132296 original size:42 final size:42
Alignment explanation
Indices: 24132250--24132336 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
24132240 ATTCAATTGT
24132250 AACAAGATGAACGAGTAATTCTACCATGTTTATTGCATGGTA
1 AACAAGATGAACGAGTAATTCTACCATGTTTATTGCATGGTA
24132292 AACAAGATGAACGAGTAATTCTACCATGTTTATTGCATGGTA
1 AACAAGATGAACGAGTAATTCTACCATGTTTATTGCATGGTA
24132334 AAC
1 AAC
24132337 TATGTGTTCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (42 bp):
AACAAGATGAACGAGTAATTCTACCATGTTTATTGCATGGTA
Found at i:24132993 original size:18 final size:18
Alignment explanation
Indices: 24132969--24133014 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
24132959 AGGAATATAT
24132969 ATTATAAAAATTCAAAAA
1 ATTATAAAAATTCAAAAA
* *
24132987 TTTATAATAATTCAAAAA
1 ATTATAAAAATTCAAAAA
24133005 ATTA-AAAAAT
1 ATTATAAAAAT
24133015 AAATAAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 5 0.21
18 19 0.79
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (18 bp):
ATTATAAAAATTCAAAAA
Found at i:24133264 original size:15 final size:14
Alignment explanation
Indices: 24133243--24133276 Score: 59
Period size: 15 Copynumber: 2.4 Consensus size: 14
24133233 TGCCAATATC
24133243 TTTTTTTGAATTTT
1 TTTTTTTGAATTTT
24133257 TATTTTTTGAATTTT
1 T-TTTTTTGAATTTT
24133272 TTTTT
1 TTTTT
24133277 GTAATTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (14 bp):
TTTTTTTGAATTTT
Found at i:24134246 original size:29 final size:30
Alignment explanation
Indices: 24134213--24134271 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 30
24134203 TTCAGTTTAA
*
24134213 TGTGTAATTTTATACATG-TATTTTGATTT
1 TGTGTAATTTTATACATGAAATTTTGATTT
24134242 TGTGTAATTTTATACATGAAATTTTGATTT
1 TGTGTAATTTTATACATGAAATTTTGATTT
24134272 GATCAAATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 18 0.64
30 10 0.36
ACGTcount: A:0.27, C:0.03, G:0.14, T:0.56
Consensus pattern (30 bp):
TGTGTAATTTTATACATGAAATTTTGATTT
Found at i:24136439 original size:21 final size:21
Alignment explanation
Indices: 24136396--24136440 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
24136386 AAAGAAAGTT
*
24136396 GGAAGAAAGAGAAAAGGGGAG
1 GGAAGAAAGAGAAAAGGCGAG
* *
24136417 GGAAGAAAGAGAGAAGGCTAG
1 GGAAGAAAGAGAAAAGGCGAG
24136438 GGA
1 GGA
24136441 GAAGCTGAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.49, C:0.02, G:0.47, T:0.02
Consensus pattern (21 bp):
GGAAGAAAGAGAAAAGGCGAG
Found at i:24137466 original size:9 final size:9
Alignment explanation
Indices: 24137448--24137511 Score: 85
Period size: 9 Copynumber: 7.2 Consensus size: 9
24137438 TTTGGTTAAA
*
24137448 AATTATCCG
1 AATTAACCG
*
24137457 AATTACCCG
1 AATTAACCG
*
24137466 AATTACCCG
1 AATTAACCG
24137475 AATTAACCG
1 AATTAACCG
*
24137484 AATTAATCG
1 AATTAACCG
24137493 AATTAACCG
1 AATTAACCG
24137502 AATT-ACCG
1 AATTAACCG
24137510 AA
1 AA
24137512 AAATACCCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
8 6 0.12
9 45 0.88
ACGTcount: A:0.41, C:0.23, G:0.11, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:24144980 original size:105 final size:105
Alignment explanation
Indices: 24144845--24145439 Score: 787
Period size: 105 Copynumber: 5.7 Consensus size: 105
24144835 TTTAAAAGTC
* * *
24144845 GCGATCTTAAATCAGCTAACTTAGAA-ATGGATAGGTTGCGATATTAAATCAACTAACCTTTGTA
1 GCGATCTTAAATCAGCTAACTCA-AAGATGAATAGGTTGCGATCTTAAATCAACTAACCTTTGTA
* * * *
24144909 AAATCAATCGTGAACGTAGGTTATCGAGTTGTTTAGGAGCT
65 AAATCAACCGTGAACGTAGGTCATCGAGCTGTTTAGGAGTT
* * * *
24144950 GTGATCTTAAATCAACTAACTCAAATATGGATAGGTTGCGATCTTAAATCAACTAACCTTTGTAA
1 GCGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGCGATCTTAAATCAACTAACCTTTGTAA
* * * * * * *
24145015 GATTAGCTGTGAACATGGGTCATCGAGCTGTTTAGGAGCT
66 AATCAACCGTGAACGTAGGTCATCGAGCTGTTTAGGAGTT
*
24145055 GCGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGCGATCTTAAATCAGCTAACCTTTGTAA
1 GCGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGCGATCTTAAATCAACTAACCTTTGTAA
* * * * *
24145120 AATCAACTGTGAACATAGGTCGTCGAGCTATTTAGGATTT
66 AATCAACCGTGAACGTAGGTCATCGAGCTGTTTAGGAGTT
* * ** *
24145160 GCGATCTTAAATCAGCTAACTCAAATATGAATATGTCACGATATTAAATCAACTAACCTTTGTAA
1 GCGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGCGATCTTAAATCAACTAACCTTTGTAA
* * *
24145225 AATCAACCGTAAACGTAGGTCATCGAGTTGTTTAGAAGTT
66 AATCAACCGTGAACGTAGGTCATCGAGCTGTTTAGGAGTT
* *
24145265 GCGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGCAATCTTAAATCATCTAACCTTTGTAA
1 GCGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGCGATCTTAAATCAACTAACCTTTGTAA
* * ** *
24145330 ATTCGACCGTGAACGTAGGTCATCGAGCAATTTAGAAGTT
66 AATCAACCGTGAACGTAGGTCATCGAGCTGTTTAGGAGTT
* * * *
24145370 GCGATATTAAATCAGCTAACTCAAAGATGAATAAGTTGTGATCTTAAATCAACTAACCTTTGAAA
1 GCGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGCGATCTTAAATCAACTAACCTTTGTAA
24145435 AATCA
66 AATCA
24145440 GCATTTATAA
Statistics
Matches: 428, Mismatches: 61, Indels: 2
0.87 0.12 0.00
Matches are distributed among these distances:
104 2 0.00
105 426 1.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.30
Consensus pattern (105 bp):
GCGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGCGATCTTAAATCAACTAACCTTTGTAA
AATCAACCGTGAACGTAGGTCATCGAGCTGTTTAGGAGTT
Found at i:24145417 original size:315 final size:315
Alignment explanation
Indices: 24144845--24145439 Score: 897
Period size: 315 Copynumber: 1.9 Consensus size: 315
24144835 TTTAAAAGTC
* * **
24144845 GCGATCTTAAATCAGCTAACTTAGAAATGGATAGGTTGCGATATTAAATCAACTAACCTTTGTAA
1 GCGATCTTAAATCAGCTAACTCAGAAATGAATAGGTCACGATATTAAATCAACTAACCTTTGTAA
* * * * *
24144910 AATCAATCGTGAACGTAGGTTATCGAGTTGTTTAGGAGCTGTGATCTTAAATCAACTAACTCAAA
66 AATCAACCGTAAACGTAGGTCATCGAGTTGTTTAGAAGCTGCGATCTTAAATCAACTAACTCAAA
* * * * *
24144975 TATGGATAGGTTGCGATCTTAAATCAACTAACCTTTGTAAGATTAGCTGTGAACATGGGTCATCG
131 GATGAATAGGTTGCAATCTTAAATCAACTAACCTTTGTAAGATTAGCCGTGAACATAGGTCATCG
** * * *
24145040 AGCTGTTTAGGAGCTGCGATCTTAAATCAGCTAACTCAAAGATGAATAGGTTGCGATCTTAAATC
196 AGCAATTTAGAAGCTGCGATATTAAATCAGCTAACTCAAAGATGAATAAGTTGCGATCTTAAATC
* *
24145105 AGCTAACCTTTGTAAAATCAACTGTGAACATAGGTCGTCGAGCTATTTAGGATTT
261 AACTAACCTTTGAAAAATCAACTGTGAACATAGGTCGTCGAGCTATTTAGGATTT
*
24145160 GCGATCTTAAATCAGCTAACTCA-AATATGAATATGTCACGATATTAAATCAACTAACCTTTGTA
1 GCGATCTTAAATCAGCTAACTCAGAA-ATGAATAGGTCACGATATTAAATCAACTAACCTTTGTA
* *
24145224 AAATCAACCGTAAACGTAGGTCATCGAGTTGTTTAGAAGTTGCGATCTTAAATCAGCTAACTCAA
65 AAATCAACCGTAAACGTAGGTCATCGAGTTGTTTAGAAGCTGCGATCTTAAATCAACTAACTCAA
* * *
24145289 AGATGAATAGGTTGCAATCTTAAATCATCTAACCTTTGTAA-ATTCGACCGTGAACGTAGGTCAT
130 AGATGAATAGGTTGCAATCTTAAATCAACTAACCTTTGTAAGATTAG-CCGTGAACATAGGTCAT
* *
24145353 CGAGCAATTTAGAAGTTGCGATATTAAATCAGCTAACTCAAAGATGAATAAGTTGTGATCTTAAA
194 CGAGCAATTTAGAAGCTGCGATATTAAATCAGCTAACTCAAAGATGAATAAGTTGCGATCTTAAA
24145418 TCAACTAACCTTTGAAAAATCA
259 TCAACTAACCTTTGAAAAATCA
24145440 GCATTTATAA
Statistics
Matches: 249, Mismatches: 29, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
314 6 0.02
315 243 0.98
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.30
Consensus pattern (315 bp):
GCGATCTTAAATCAGCTAACTCAGAAATGAATAGGTCACGATATTAAATCAACTAACCTTTGTAA
AATCAACCGTAAACGTAGGTCATCGAGTTGTTTAGAAGCTGCGATCTTAAATCAACTAACTCAAA
GATGAATAGGTTGCAATCTTAAATCAACTAACCTTTGTAAGATTAGCCGTGAACATAGGTCATCG
AGCAATTTAGAAGCTGCGATATTAAATCAGCTAACTCAAAGATGAATAAGTTGCGATCTTAAATC
AACTAACCTTTGAAAAATCAACTGTGAACATAGGTCGTCGAGCTATTTAGGATTT
Found at i:24156757 original size:21 final size:20
Alignment explanation
Indices: 24156717--24156764 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
24156707 TATACACTAA
*
24156717 AAATATATAAAAATAGAAAT
1 AAATATATAAAAATACAAAT
*
24156737 AAATATATATAAAATTCAAAT
1 AAATATATA-AAAATACAAAT
*
24156758 ATATATA
1 AAATATA
24156765 GAATCTAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (20 bp):
AAATATATAAAAATACAAAT
Found at i:24160701 original size:26 final size:26
Alignment explanation
Indices: 24160680--24160736 Score: 78
Period size: 29 Copynumber: 2.1 Consensus size: 26
24160670 ACTAAAAATT
24160680 TATTTTAAAAATAAAAAATAAAAAAA
1 TATTTTAAAAATAAAAAATAAAAAAA
*
24160706 TATTTTAAAAATATTTTAAAATAAAAAAA
1 TATTTTAAAAATA---AAAAATAAAAAAA
24160735 TA
1 TA
24160737 AAAAATATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 13 0.48
29 14 0.52
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (26 bp):
TATTTTAAAAATAAAAAATAAAAAAA
Found at i:24160728 original size:10 final size:11
Alignment explanation
Indices: 24160701--24160726 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
24160691 TAAAAAATAA
24160701 AAAAATATTTT
1 AAAAATATTTT
24160712 AAAAATATTTT
1 AAAAATATTTT
24160723 AAAA
1 AAAA
24160727 TAAAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:24162217 original size:14 final size:14
Alignment explanation
Indices: 24162182--24162217 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
24162172 TATATAATGA
*
24162182 TTAAAAAATATTAT
1 TTAAAAAACATTAT
24162196 TTATAAAAACATTAT
1 TTA-AAAAACATTAT
24162211 TTAAAAA
1 TTAAAAA
24162218 TACAAAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (14 bp):
TTAAAAAACATTAT
Found at i:24165288 original size:63 final size:63
Alignment explanation
Indices: 24165210--24165330 Score: 188
Period size: 63 Copynumber: 1.9 Consensus size: 63
24165200 TTCCAGGCCA
* **
24165210 TGTAACTCTCTGTTTACGCTTTAGAACCACACAGGCAGAGGACATGGGTGTGTGCCCAAGCTG
1 TGTAACTCTCTGTTTACGCTTTAGAACCACACAGACAGAGGACATGGAAGTGTGCCCAAGCTG
* * *
24165273 TGTAACTTTCTGTTTACGTTTTAGAACCACACTGACAGAGGACATGGAAGTGTGCCCA
1 TGTAACTCTCTGTTTACGCTTTAGAACCACACAGACAGAGGACATGGAAGTGTGCCCA
24165331 GGCCGTGTGA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 52 1.00
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (63 bp):
TGTAACTCTCTGTTTACGCTTTAGAACCACACAGACAGAGGACATGGAAGTGTGCCCAAGCTG
Found at i:24167365 original size:53 final size:53
Alignment explanation
Indices: 24167302--24167409 Score: 155
Period size: 53 Copynumber: 2.0 Consensus size: 53
24167292 TAAAATTAAT
* * *
24167302 TATTTAAATGGTAATTTCATATTTTTTTAATGTTCA-TTTTTGATAAGTAATAA
1 TATTTAAATGGTAATTTCAT-GTCTTTTAATATTCATTTTTTGATAAGTAATAA
* *
24167355 TATTTAAATGGTAATTTCATGTCTTTTACTATTTATTTTTTGATAAGTAATAA
1 TATTTAAATGGTAATTTCATGTCTTTTAATATTCATTTTTTGATAAGTAATAA
24167408 TA
1 TA
24167410 ATATTTTTTT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
52 10 0.20
53 39 0.80
ACGTcount: A:0.33, C:0.05, G:0.09, T:0.53
Consensus pattern (53 bp):
TATTTAAATGGTAATTTCATGTCTTTTAATATTCATTTTTTGATAAGTAATAA
Found at i:24169095 original size:19 final size:20
Alignment explanation
Indices: 24169073--24169119 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
24169063 ATAATTTCAA
*
24169073 AATTTTGATATA-TTCTTTT
1 AATTTTGATAAAGTTCTTTT
*
24169092 AATTTT-CTAAAGTTTCTTTT
1 AATTTTGATAAAG-TTCTTTT
24169112 AATTTTGA
1 AATTTTGA
24169120 CACGTTTACA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
18 3 0.14
19 6 0.27
20 13 0.59
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (20 bp):
AATTTTGATAAAGTTCTTTT
Found at i:24170287 original size:2 final size:2
Alignment explanation
Indices: 24170280--24170306 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24170270 ATGAAAGCTT
24170280 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
24170307 CAAATATGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24172673 original size:22 final size:22
Alignment explanation
Indices: 24172633--24172675 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
24172623 CACCATACCA
* *
24172633 GAGAGCACCGTAGTTCTAAACT
1 GAGAGCACCGAAGTGCTAAACT
*
24172655 GAGAGCACTGAAGTGCTAAAC
1 GAGAGCACCGAAGTGCTAAAC
24172676 CCATACAAGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.35, C:0.21, G:0.26, T:0.19
Consensus pattern (22 bp):
GAGAGCACCGAAGTGCTAAACT
Found at i:24179849 original size:3 final size:3
Alignment explanation
Indices: 24179835--24179939 Score: 55
Period size: 3 Copynumber: 35.0 Consensus size: 3
24179825 TTTATTTTTC
* *
24179835 TTA TTA TT- TTA TTA TATA TTTA TTA -TA TT- TAA TTGG TTCA TTA TT-
1 TTA TTA TTA TTA TTA T-TA -TTA TTA TTA TTA TTA TT-A TT-A TTA TTA
*
24179880 TTCA TTTA TTA TTA -TA TTA TTA -TA TTA TTA TTA -GA TTTA GTTA TTA
1 TT-A T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA -TTA TTA
24179926 TT- TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA
24179940 GCTTACAAGA
Statistics
Matches: 80, Mismatches: 8, Indels: 28
0.69 0.07 0.24
Matches are distributed among these distances:
2 14 0.17
3 49 0.61
4 15 0.19
5 2 0.03
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:24179849 original size:11 final size:11
Alignment explanation
Indices: 24179830--24179938 Score: 69
Period size: 11 Copynumber: 9.2 Consensus size: 11
24179820 TTCCATTTAT
*
24179830 TTTTCTTATTA
1 TTTTATTATTA
24179841 TTTTATTA-TA
1 TTTTATTATTA
24179851 TATTTATTA-TA
1 T-TTTATTATTA
*
24179862 TTTAATTGGTTCATTA
1 -TT--TT-ATT-ATTA
24179878 TTTTCATTTATTA
1 TTTT-A-TTATTA
*
24179891 TTATATTATTA
1 TTTTATTATTA
*
24179902 TATTATTATTA
1 TTTTATTATTA
*
24179913 GATTTAGTTATTA
1 -TTTTA-TTATTA
24179926 TTTTATTATTA
1 TTTTATTATTA
24179937 TT
1 TT
24179939 AGCTTACAAG
Statistics
Matches: 78, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
10 3 0.04
11 40 0.51
12 9 0.12
13 17 0.22
14 4 0.05
15 3 0.04
16 2 0.03
ACGTcount: A:0.28, C:0.03, G:0.04, T:0.65
Consensus pattern (11 bp):
TTTTATTATTA
Found at i:24183188 original size:20 final size:20
Alignment explanation
Indices: 24183152--24183189 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
24183142 GAACACTTAG
*
24183152 AAGCAAAAAGAGTGAAAAAC
1 AAGCAAAAAGAGCGAAAAAC
24183172 AAGCGAAAAA-AGCGAAAA
1 AAGC-AAAAAGAGCGAAAA
24183190 TCAGAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.66, C:0.11, G:0.21, T:0.03
Consensus pattern (20 bp):
AAGCAAAAAGAGCGAAAAAC
Found at i:24186988 original size:28 final size:25
Alignment explanation
Indices: 24186946--24187009 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 25
24186936 TAAGAGGCAC
*
24186946 ATAAATAAATAAATAATAATAATAACA
1 ATAAAAAAATAAATAA-AATAATAA-A
*
24186973 ATAAAGAAAATAAATAAAATTATAAA
1 ATAAA-AAAATAAATAAAATAATAAA
*
24186999 ATATAAAAATA
1 ATAAAAAAATA
24187010 TATATATGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 6 0.18
26 5 0.15
27 12 0.36
28 10 0.30
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (25 bp):
ATAAAAAAATAAATAAAATAATAAA
Found at i:24187234 original size:12 final size:12
Alignment explanation
Indices: 24187199--24187234 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
24187189 GAAATATATA
*
24187199 AATAATAGCAAT
1 AATAATAGTAAT
24187211 AATAATAGTAAT
1 AATAATAGTAAT
*
24187223 AATAATATTAAT
1 AATAATAGTAAT
24187235 TAATTAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (12 bp):
AATAATAGTAAT
Found at i:24189208 original size:16 final size:18
Alignment explanation
Indices: 24189187--24189219 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
24189177 AAATATCATT
24189187 ATTTTTA-GTA-AATATA
1 ATTTTTATGTATAATATA
24189203 ATTTTTATGTATAATAT
1 ATTTTTATGTATAATAT
24189220 TTAATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (18 bp):
ATTTTTATGTATAATATA
Found at i:24189389 original size:20 final size:21
Alignment explanation
Indices: 24189364--24189403 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
24189354 TATTTATTAT
*
24189364 TTTATT-TTATAAATAAAATA
1 TTTATTATTAAAAATAAAATA
24189384 TTTATTAATTAAAAATAAAA
1 TTTATT-ATTAAAAATAAAA
24189404 AATTAAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TTTATTATTAAAAATAAAATA
Found at i:24195506 original size:15 final size:15
Alignment explanation
Indices: 24195486--24195518 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
24195476 AAAGTAACTT
*
24195486 TAATAATAATGATAA
1 TAATAATAAAGATAA
24195501 TAATAATAAAGATAA
1 TAATAATAAAGATAA
24195516 TAA
1 TAA
24195519 AATGAAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (15 bp):
TAATAATAAAGATAA
Found at i:24196330 original size:25 final size:25
Alignment explanation
Indices: 24196282--24196330 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
24196272 CATAATTGAA
* * *
24196282 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
24196307 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
24196331 ATGTGTATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:24196898 original size:73 final size:73
Alignment explanation
Indices: 24196817--24196974 Score: 280
Period size: 73 Copynumber: 2.2 Consensus size: 73
24196807 AGAAATAAGA
24196817 TATGAGATGATGGATTGAGATGTGAAACTTGAATGAATTCAAGTATTGATCAAAGATATGAATCA
1 TATGAGATGATGGATTGAGATGTGAAACTTGAATGAATTCAAGTATTGATCAAAGATATGAATCA
*
24196882 TACCGTTG
66 TACCATTG
*
24196890 TATGAGATGATGGATTGAGATGTGAAACTTGAATGAATTCAAGTATTGATCGAAGATATGAATCA
1 TATGAGATGATGGATTGAGATGTGAAACTTGAATGAATTCAAGTATTGATCAAAGATATGAATCA
*
24196955 TGCCATTG
66 TACCATTG
*
24196963 CATGAGATGATG
1 TATGAGATGATG
24196975 TATTCAAATG
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 81 1.00
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (73 bp):
TATGAGATGATGGATTGAGATGTGAAACTTGAATGAATTCAAGTATTGATCAAAGATATGAATCA
TACCATTG
Found at i:24198260 original size:49 final size:49
Alignment explanation
Indices: 24198178--24198273 Score: 156
Period size: 49 Copynumber: 2.0 Consensus size: 49
24198168 GACATTCAAG
* *
24198178 AATGGATAAATAGTGATAAGAGTGTAGACAGTGGAAGACTAAGTTTAGC
1 AATGGATAAATAGTGATAAGAGTGTAGAAAGTGGAAGACCAAGTTTAGC
* *
24198227 AATGTATAAATAGTGATAATAGTGTAGAAAGTGGAAGACCAAGTTTA
1 AATGGATAAATAGTGATAAGAGTGTAGAAAGTGGAAGACCAAGTTTA
24198274 TCATTGCCTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.43, C:0.05, G:0.26, T:0.26
Consensus pattern (49 bp):
AATGGATAAATAGTGATAAGAGTGTAGAAAGTGGAAGACCAAGTTTAGC
Found at i:24199748 original size:19 final size:19
Alignment explanation
Indices: 24199724--24199791 Score: 66
Period size: 20 Copynumber: 3.5 Consensus size: 19
24199714 AATTGAACTT
24199724 GAAAATTGGACCTGAGATC
1 GAAAATTGGACCTGAGATC
* *
24199743 GAAAATTGGGCCCGAGAATC
1 GAAAATTGGACCTGAG-ATC
*
24199763 CAAAATTGAGA-CTGAGATCC
1 GAAAATTG-GACCTGAGAT-C
*
24199783 AAAAATTGG
1 GAAAATTGG
24199792 TTGAATTGAG
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
19 17 0.43
20 22 0.55
21 1 0.03
ACGTcount: A:0.40, C:0.16, G:0.25, T:0.19
Consensus pattern (19 bp):
GAAAATTGGACCTGAGATC
Found at i:24200213 original size:61 final size:58
Alignment explanation
Indices: 24200148--24200263 Score: 160
Period size: 61 Copynumber: 1.9 Consensus size: 58
24200138 AGTGATGATC
* * *
24200148 TTAATATTAAACTTAATTTAATATTTATATTGTAGATAAATATTCTATTAATTTAATAGAT
1 TTAATATTAAACTTAATCTAATATTTAT-CT-T-GATAAATATTATATTAATTTAATAGAT
* *
24200209 TTAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAATTTAATA
1 TTAATATTAAACTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
24200264 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
58 22 0.44
59 1 0.02
60 1 0.02
61 26 0.52
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.50
Consensus pattern (58 bp):
TTAATATTAAACTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATAGAT
Found at i:24200276 original size:58 final size:60
Alignment explanation
Indices: 24200150--24200284 Score: 152
Period size: 58 Copynumber: 2.3 Consensus size: 60
24200140 TGATGATCTT
* * * * *
24200150 AATATTAAACTTAATTTAATATTTATATTGTAGATAAATATTCTATTAATTTAATAGATTT
1 AATATTAAATTTAATCTAATATTTATACTGTAGATAAATATTATATTAATTTAATA-ATTA
*
24200211 AATATTAAATTTAATCTAATATTTAT-CT-T-GATAAGTATTATATTAATTTAAT-ATTA
1 AATATTAAATTTAATCTAATATTTATACTGTAGATAAATATTATATTAATTTAATAATTA
*
24200267 AAGTGATTAAGTTTAATC
1 AA-T-ATTAAATTTAATC
24200285 ATAGTTGAAC
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
56 5 0.08
57 1 0.02
58 33 0.51
59 1 0.02
60 1 0.02
61 24 0.37
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.48
Consensus pattern (60 bp):
AATATTAAATTTAATCTAATATTTATACTGTAGATAAATATTATATTAATTTAATAATTA
Found at i:24210762 original size:50 final size:51
Alignment explanation
Indices: 24210677--24210805 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
24210667 GTAAAGAGGT
* * **
24210677 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAG-ATGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACATC
*
24210727 CC-TCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACATC
1 CCAT-GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACATC
24210778 CCATGTAAGACCATGTCTGGGACATGGC
1 CCATGTAAGACCATGTCTGGGACATGGC
24210806 TTTGGCATGT
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
49 1 0.01
50 40 0.56
51 29 0.41
52 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (51 bp):
CCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACATC
Found at i:24216696 original size:43 final size:43
Alignment explanation
Indices: 24216592--24216745 Score: 179
Period size: 43 Copynumber: 3.6 Consensus size: 43
24216582 TAGGGTTACC
* *
24216592 GAGATTACATGTAAGACCATATCTGAGATA-TGGCATCGATAT
1 GAGATTACATGTAAGACCATATCTGGGACATTGGCATCGATAT
* * * *
24216634 GAGAAT-CGTGTAAGACCATGTCTGGGACATTGGCATCAATAT
1 GAGATTACATGTAAGACCATATCTGGGACATTGGCATCGATAT
* * ** *
24216676 GTGATTTCATGTAAGACCATGGCTAGG-CTATTGGCATCGATAT
1 GAGATTACATGTAAGACCATATCTGGGAC-ATTGGCATCGATAT
24216719 GAGATTACATGTAAGACCATATCTGGG
1 GAGATTACATGTAAGACCATATCTGGG
24216746 TATGGCATTG
Statistics
Matches: 92, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
41 19 0.21
42 21 0.23
43 52 0.57
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.29
Consensus pattern (43 bp):
GAGATTACATGTAAGACCATATCTGGGACATTGGCATCGATAT
Found at i:24220166 original size:34 final size:35
Alignment explanation
Indices: 24220094--24220166 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
24220084 CTCGGCATAC
* *
24220094 TTTTTTGGAGGTTTAATTTCTCTTCTACTTCTATT
1 TTTTTTGAAGGTTTAATTTCTCTTCTACATCTATT
*
24220129 TTTTTTGAAGGTTTAATTTCTCTTCTAGATCTATT
1 TTTTTTGAAGGTTTAATTTCTCTTCTACATCTATT
24220164 TTT
1 TTT
24220167 GGAGATAGAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.16, C:0.12, G:0.11, T:0.60
Consensus pattern (35 bp):
TTTTTTGAAGGTTTAATTTCTCTTCTACATCTATT
Found at i:24222752 original size:24 final size:24
Alignment explanation
Indices: 24222710--24222761 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
24222700 AACCAAAGTC
* *
24222710 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
* *
24222734 AAATATATTATATTCATAAATACT
1 AAATATATTATACTAATAAATACT
24222758 AAAT
1 AAAT
24222762 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:24226957 original size:347 final size:347
Alignment explanation
Indices: 24226322--24228413 Score: 4031
Period size: 347 Copynumber: 6.0 Consensus size: 347
24226312 TTTATTGTTT
*
24226322 ATTTTGGTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGTTCAA
1 ATTTTGGTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
* * *
24226387 GAATGAGCCTGCTAATTCAATGGTTAAGTTTCATATTACTTATGGTCCTGTGTTCGAGTTTTTAC
66 GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
24226452 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTCTTTTACTATTA
131 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTCTTTTACTATTA
24226517 ACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTTT
196 ACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTTT
24226582 CAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTTT
261 CAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTTT
24226647 CTTTAACTTTGATGTTGAATTA
326 CTTTAACTTTGATGTTGAATTA
24226669 ATTTTGGTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
1 ATTTTGGTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
24226734 GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
66 GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
24226799 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTCTTTTACTATTA
131 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTCTTTTACTATTA
24226864 ACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTTT
196 ACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTTT
24226929 CAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTTT
261 CAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTTT
24226994 CTTTAACTTTGATGTTGAATTA
326 CTTTAACTTTGATGTTGAATTA
24227016 ATTTTGGTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
1 ATTTTGGTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
24227081 GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
66 GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
24227146 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTCTTTTACTATTA
131 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTCTTTTACTATTA
24227211 ACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTTT
196 ACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTTT
24227276 CAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTTT
261 CAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTTT
* *
24227341 ATTTAACTTTGATGTTGTATTA
326 CTTTAACTTTGATGTTGAATTA
*
24227363 ATTTTGTTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
1 ATTTTGGTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
24227428 GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
66 GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
*
24227493 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTTTTTTTACTATT
131 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTC-TTCTTTTACTATT
24227558 AACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTT
195 AACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTT
24227623 TCAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTT
260 TCAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTT
* *
24227688 TATTTAACTTTGATGTTGTATTA
325 TCTTTAACTTTGATGTTGAATTA
*
24227711 ATTTTGTTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
1 ATTTTGGTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
24227776 GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
66 GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
24227841 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTCTTTTACTATTA
131 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTCTTTTACTATTA
24227906 ACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTTT
196 ACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTTT
24227971 CAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTTT
261 CAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTTT
24228036 CTTTAACTTTGATGTTGAATTA
326 CTTTAACTTTGATGTTGAATTA
*
24228058 ATTTTGTTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
1 ATTTTGGTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
24228123 GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
66 GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
*
24228188 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTTTTTTTACTATT
131 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTC-TTCTTTTACTATT
24228253 AACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTT
195 AACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTT
24228318 TCAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTT
260 TCAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTT
*
24228383 TCTTTAACTTTGATGTTGTATTA
325 TCTTTAACTTTGATGTTGAATTA
24228406 ATTGTTGG
1 ATT-TTGG
24228414 ATTGTAACAT
Statistics
Matches: 1728, Mismatches: 14, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
347 1212 0.70
348 513 0.30
349 3 0.00
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (347 bp):
ATTTTGGTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTCTTTTACTATTA
ACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTTT
CAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTTT
CTTTAACTTTGATGTTGAATTA
Found at i:24227963 original size:695 final size:695
Alignment explanation
Indices: 24226322--24228413 Score: 4069
Period size: 695 Copynumber: 3.0 Consensus size: 695
24226312 TTTATTGTTT
*
24226322 ATTTTGGTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGTTCAA
1 ATTTTGGTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
* * *
24226387 GAATGAGCCTGCTAATTCAATGGTTAAGTTTCATATTACTTATGGTCCTGTGTTCGAGTTTTTAC
66 GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
24226452 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTCTTTTACTATTA
131 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTCTTTTACTATTA
24226517 ACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTTT
196 ACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTTT
24226582 CAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTTT
261 CAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTTT
*
24226647 CTTTAACTTTGATGTTGAATTAATTTTGGTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTA
326 CTTTAACTTTGATGTTGAATTAATTTTGTTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTA
24226712 TTTCTGTGTTAATTTGGCTCAAGAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTAT
391 TTTCTGTGTTAATTTGGCTCAAGAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTAT
24226777 GGTCCCGTGTTCGAGTTTTTACACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTAT
456 GGTCCCGTGTTCGAGTTTTTACACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTAT
*
24226842 ATTTTTTC-TTCTTTTACTATTAACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTT
521 ATTTTTTCTTTTTTTTACTATTAACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTT
24226906 ATTATTGGTTTTCTTTTCCTTTTCAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTT
586 ATTATTGGTTTTCTTTTCCTTTTCAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTT
*
24226971 TTGCTATTGTGGCTTTGATCTTTCTTTAACTTTGATGTTGAATTA
651 TTGCTATTGTGGCTTTGATCTTTCTTTAACTTTGATGTTGTATTA
24227016 ATTTTGGTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
1 ATTTTGGTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
24227081 GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
66 GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
24227146 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTCTTTTACTATTA
131 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTCTTTTACTATTA
24227211 ACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTTT
196 ACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTTT
24227276 CAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTTT
261 CAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTTT
* *
24227341 ATTTAACTTTGATGTTGTATTAATTTTGTTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTA
326 CTTTAACTTTGATGTTGAATTAATTTTGTTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTA
24227406 TTTCTGTGTTAATTTGGCTCAAGAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTAT
391 TTTCTGTGTTAATTTGGCTCAAGAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTAT
24227471 GGTCCCGTGTTCGAGTTTTTACACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTAT
456 GGTCCCGTGTTCGAGTTTTTACACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTAT
24227536 ATTTTTTCTTTTTTTTACTATTAACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTT
521 ATTTTTTCTTTTTTTTACTATTAACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTT
24227601 ATTATTGGTTTTCTTTTCCTTTTCAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTT
586 ATTATTGGTTTTCTTTTCCTTTTCAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTT
*
24227666 TTGCTATTGTGGCTTTGATCTTTATTTAACTTTGATGTTGTATTA
651 TTGCTATTGTGGCTTTGATCTTTCTTTAACTTTGATGTTGTATTA
*
24227711 ATTTTGTTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
1 ATTTTGGTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
24227776 GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
66 GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
24227841 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTCTTTTACTATTA
131 ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTCTTTTACTATTA
24227906 ACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTTT
196 ACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTTT
24227971 CAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTTT
261 CAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTTT
24228036 CTTTAACTTTGATGTTGAATTAATTTTGTTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTA
326 CTTTAACTTTGATGTTGAATTAATTTTGTTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTA
24228101 TTTCTGTGTTAATTTGGCTCAAGAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTAT
391 TTTCTGTGTTAATTTGGCTCAAGAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTAT
24228166 GGTCCCGTGTTCGAGTTTTTACACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTAT
456 GGTCCCGTGTTCGAGTTTTTACACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTAT
24228231 ATTTTTTCTTTTTTTTACTATTAACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTT
521 ATTTTTTCTTTTTTTTACTATTAACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTT
24228296 ATTATTGGTTTTCTTTTCCTTTTCAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTT
586 ATTATTGGTTTTCTTTTCCTTTTCAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTT
24228361 TTGCTATTGTGGCTTTGATCTTTCTTTAACTTTGATGTTGTATTA
651 TTGCTATTGTGGCTTTGATCTTTCTTTAACTTTGATGTTGTATTA
24228406 ATTGTTGG
1 ATT-TTGG
24228414 ATTGTAACAT
Statistics
Matches: 1381, Mismatches: 15, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
694 521 0.38
695 857 0.62
696 3 0.00
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (695 bp):
ATTTTGGTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTATTTCTGTGTTAATTTGGCTCAA
GAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTATGGTCCCGTGTTCGAGTTTTTAC
ACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTATATTTTTTCTTCTTTTACTATTA
ACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTTATTATTGGTTTTCTTTTCCTTTT
CAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTTTTGCTATTGTGGCTTTGATCTTT
CTTTAACTTTGATGTTGAATTAATTTTGTTTGAACCCCTATCCTTGAGTCCTCGACTTAAGTTTA
TTTCTGTGTTAATTTGGCTCAAGAATGAGCCTGCTAATTCAATAGTTAAGTTTCATATTACCTAT
GGTCCCGTGTTCGAGTTTTTACACAAGCGATGAGGAATATTTTGCACCGAGTGGTAGTTAAGTAT
ATTTTTTCTTTTTTTTACTATTAACTAAATTTCCTTTTTCCCTCTCTTTACTAAAACGTTCTTTT
ATTATTGGTTTTCTTTTCCTTTTCAATTTTCTCCTTTTTGTTTTGCTTTTCGTTTTCTTTTCTTT
TTGCTATTGTGGCTTTGATCTTTCTTTAACTTTGATGTTGTATTA
Found at i:24231934 original size:31 final size:29
Alignment explanation
Indices: 24231867--24231941 Score: 80
Period size: 31 Copynumber: 2.5 Consensus size: 29
24231857 ATTGTTTATG
* *
24231867 TGCTTATTTTTATTTATAATATAAATATA
1 TGCTTATTTTTATTAAAAATATAAATATA
*
24231896 TGATTATTTTATATCTAAAAAT-TAAGATATA
1 TGCTTATTTT-TAT-TAAAAATATAA-ATATA
24231927 TGCTTATTTATTATT
1 TGCTTATTT-TTATT
24231942 TTTTTGCTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
29 9 0.24
30 7 0.18
31 21 0.55
32 1 0.03
ACGTcount: A:0.37, C:0.04, G:0.05, T:0.53
Consensus pattern (29 bp):
TGCTTATTTTTATTAAAAATATAAATATA
Found at i:24233117 original size:15 final size:16
Alignment explanation
Indices: 24233079--24233114 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
24233069 AAAATATAAG
24233079 AAAAATTATGATAATT
1 AAAAATTATGATAATT
24233095 AAAAATTATGATAATT
1 AAAAATTATGATAATT
24233111 AAAA
1 AAAA
24233115 TTAGAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (16 bp):
AAAAATTATGATAATT
Found at i:24234900 original size:20 final size:20
Alignment explanation
Indices: 24234875--24234949 Score: 71
Period size: 20 Copynumber: 3.7 Consensus size: 20
24234865 ATTAGCAAAT
24234875 AAATATTTAAATATAAATAA
1 AAATATTTAAATATAAATAA
* *
24234895 AAATATTTATATATAAATTA
1 AAATATTTAAATATAAATAA
* *
24234915 AATTAAATTAAAT-TAAATAA
1 AAAT-ATTTAAATATAAATAA
**
24234935 TTTATATTTAAATAT
1 -AAATATTTAAATAT
24234950 TAGATACGAA
Statistics
Matches: 42, Mismatches: 10, Indels: 5
0.74 0.18 0.09
Matches are distributed among these distances:
20 34 0.81
21 8 0.19
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
AAATATTTAAATATAAATAA
Found at i:24234918 original size:5 final size:5
Alignment explanation
Indices: 24234908--24234932 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
24234898 TATTTATATA
24234908 TAAAT TAAAT TAAAT TAAAT TAAAT
1 TAAAT TAAAT TAAAT TAAAT TAAAT
24234933 AATTTATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAAAT
Found at i:24235403 original size:21 final size:21
Alignment explanation
Indices: 24235366--24235413 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
24235356 ATGAGCAATT
* * *
24235366 AAATC-AATTTGATTAAAATC
1 AAATCAAATTGGAATAAAATA
24235386 AAATCAAATTGGAATAAAATA
1 AAATCAAATTGGAATAAAATA
24235407 AAATCAA
1 AAATCAA
24235414 GATATATGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.58, C:0.08, G:0.06, T:0.27
Consensus pattern (21 bp):
AAATCAAATTGGAATAAAATA
Found at i:24238479 original size:37 final size:37
Alignment explanation
Indices: 24238417--24238500 Score: 109
Period size: 37 Copynumber: 2.3 Consensus size: 37
24238407 ACTCCCTGTT
* *
24238417 TTGGCGTGTTTTCGGTTGGACTAGCTCTTATGAGC-A
1 TTGGCGTGTTATCGGTTGGACTAGCTCTTACGAGCGA
*
24238453 TCTGGCGTGTTATCAGG-TGGATTAGCTCTTACGAGCGA
1 T-TGGCGTGTTATC-GGTTGGACTAGCTCTTACGAGCGA
24238491 TTGGCGTGTT
1 TTGGCGTGTT
24238501 TTAGTTTGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
36 1 0.02
37 37 0.88
38 4 0.10
ACGTcount: A:0.14, C:0.17, G:0.32, T:0.37
Consensus pattern (37 bp):
TTGGCGTGTTATCGGTTGGACTAGCTCTTACGAGCGA
Found at i:24242583 original size:31 final size:31
Alignment explanation
Indices: 24242548--24242614 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
24242538 GAAAGGAAAA
*
24242548 GGCAAAGTAAAAAGATAGTTTGAAAGCCAAG
1 GGCAAAGTAAAAAGACAGTTTGAAAGCCAAG
* * * * *
24242579 GGCAAGGTGACATGCCAGTTTGAAAGCCAAG
1 GGCAAAGTAAAAAGACAGTTTGAAAGCCAAG
24242610 GGCAA
1 GGCAA
24242615 GGTGACATGC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.30, T:0.15
Consensus pattern (31 bp):
GGCAAAGTAAAAAGACAGTTTGAAAGCCAAG
Found at i:24242615 original size:31 final size:31
Alignment explanation
Indices: 24242564--24242625 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
24242554 GTAAAAAGAT
24242564 AGTTTGAAAGCCAAGGGCAAGGTGACATGCC
1 AGTTTGAAAGCCAAGGGCAAGGTGACATGCC
24242595 AGTTTGAAAGCCAAGGGCAAGGTGACATGCC
1 AGTTTGAAAGCCAAGGGCAAGGTGACATGCC
24242626 CGGTGCGGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.19, G:0.32, T:0.16
Consensus pattern (31 bp):
AGTTTGAAAGCCAAGGGCAAGGTGACATGCC
Found at i:24258425 original size:5 final size:5
Alignment explanation
Indices: 24258415--24258443 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
24258405 AAATTAGGTT
24258415 TTGTA TTGTA TTGTA TTGTA TTGTA TTGT
1 TTGTA TTGTA TTGTA TTGTA TTGTA TTGT
24258444 TGCAAGTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.21, T:0.62
Consensus pattern (5 bp):
TTGTA
Found at i:24258465 original size:3 final size:3
Alignment explanation
Indices: 24258457--24258491 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
24258447 AAGTTCTCTA
24258457 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
24258492 TCTGTTTCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:24264298 original size:20 final size:20
Alignment explanation
Indices: 24264260--24264298 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
24264250 AAACTTTATC
* *
24264260 TATTTTGGTTTTATTTAAAG
1 TATTTTGGTTCTATATAAAG
24264280 TATTTTGGTTCTATATAAA
1 TATTTTGGTTCTATATAAA
24264299 ATGAATTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.13, T:0.56
Consensus pattern (20 bp):
TATTTTGGTTCTATATAAAG
Found at i:24265177 original size:75 final size:75
Alignment explanation
Indices: 24265069--24265698 Score: 670
Period size: 75 Copynumber: 8.4 Consensus size: 75
24265059 TTGTGTCCCA
* * * * *
24265069 CTGATTTAAAATCGTGACCATCGGTGTTCTAACAGCTCGCTGACCTACGTTCGCAGTTGATATTT
1 CTGATTTAAGATCGCGACCCTCGGTTTTCTAACAGCTCGCTGACCTACGTTCACAGTTGATATTT
* *
24265134 TTGCGGTCTG
66 TTACGGTCCG
* * * * * * * * *
24265144 TTAATTTAAGATCACGACCATCGGTTTTTTAACAGCTCGCTGACCTACATTCCCAGCTGATACTT
1 CTGATTTAAGATCGCGACCCTCGGTTTTCTAACAGCTCGCTGACCTACGTTCACAGTTGATATTT
*
24265209 TTACGGTCCA
66 TTACGGTCCG
* * * **
24265219 CTGATTTAAGATCGCGACCCTCGGTTTTCTAATAGCTTGCTAACCTACGTTCACAACTGATA-TT
1 CTGATTTAAGATCGCGACCCTCGGTTTTCTAACAGCTCGCTGACCTACGTTCACAGTTGATATTT
* *
24265283 TTAGGGTTCG
66 TTACGGTCCG
* * * * * *
24265293 CTGATTTAAGATCGCAACCTTCGATTTTCTAACAGGTCGCTGACCTACATTCACAAG-TGATACT
1 CTGATTTAAGATCGCGACCCTCGGTTTTCTAACAGCTCGCTGACCTACGTTCAC-AGTTGATATT
* *
24265357 TTTATGGTCCA
65 TTTACGGTCCG
* * * ** * *
24265368 CTGATTTAAGATTGCGACCCTTGGTTTTCTAACAGTTCATTGACCTACATTCACTGTTGATATTT
1 CTGATTTAAGATCGCGACCCTCGGTTTTCTAACAGCTCGCTGACCTACGTTCACAGTTGATATTT
* *
24265433 TTATGGTTCG
66 TTACGGTCCG
* * * * * *
24265443 CTGATTTAATATCACGACCCTCAGTTTTCTAACAGCTCGTTGACCTATGTTCACAGTTGACATTT
1 CTGATTTAAGATCGCGACCCTCGGTTTTCTAACAGCTCGCTGACCTACGTTCACAGTTGATATTT
24265508 TTACGGTCCG
66 TTACGGTCCG
* * * * * *
24265518 CTGATTTAAGATCACGACCTTTGGTTTTCTAACAACTCGCTGATCTATGTTCACAGTTGATATTT
1 CTGATTTAAGATCGCGACCCTCGGTTTTCTAACAGCTCGCTGACCTACGTTCACAGTTGATATTT
* *
24265583 TTATGGTCCA
66 TTACGGTCCG
* * * *
24265593 TTGATTTAAGATCGCGACCCTTGGTTTTCTAACAGCTCGTTGACCTACGTTCACAGGTGATATTT
1 CTGATTTAAGATCGCGACCCTCGGTTTTCTAACAGCTCGCTGACCTACGTTCACAGTTGATATTT
24265658 TTACGGTCCG
66 TTACGGTCCG
* * * *
24265668 CTTATTTAATATCTCGACCCTCGATTTTCTA
1 CTGATTTAAGATCGCGACCCTCGGTTTTCTA
24265699 GCAATTTGTT
Statistics
Matches: 461, Mismatches: 91, Indels: 6
0.83 0.16 0.01
Matches are distributed among these distances:
74 61 0.13
75 400 0.87
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (75 bp):
CTGATTTAAGATCGCGACCCTCGGTTTTCTAACAGCTCGCTGACCTACGTTCACAGTTGATATTT
TTACGGTCCG
Found at i:24267210 original size:25 final size:26
Alignment explanation
Indices: 24267182--24267230 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
24267172 GGTAAAAAAG
24267182 TAAATAT-TATTATA-ATATTTTATAA
1 TAAATATAT-TTATAGATATTTTATAA
*
24267207 TAAATATATTTATAGTTATTTTAT
1 TAAATATATTTATAGATATTTTAT
24267231 TAAAAGTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (26 bp):
TAAATATATTTATAGATATTTTATAA
Found at i:24273529 original size:131 final size:131
Alignment explanation
Indices: 24273295--24273559 Score: 449
Period size: 131 Copynumber: 2.0 Consensus size: 131
24273285 AGATATTCTT
* * * * * *
24273295 TCCTTAGTTGATTCAATGTTGCATGTATATATTGTTGTACATATTTCTAAGAAATATATACTTTG
1 TCCTTAATTAATTCAATGCTGCATGTATATATAGTTGTACATATTTCTAAGAAATACATACTCTG
*
24273360 AGAGAGTTTTTTCCTCAATACATTAGAGTATTCATCTTTAATTTCATCATAGTATCAGATTTTTT
66 AGAGAGCTTTTTCCTCAATACATTAGAGTATTCATCTTTAATTTCATCATAGTATCAGATTTTTT
24273425 A
131 A
24273426 TCCTTAATTAATTCAATGCTGCATGTATATATAGTTGTACATATTTCTAAGAAATACATACTCTG
1 TCCTTAATTAATTCAATGCTGCATGTATATATAGTTGTACATATTTCTAAGAAATACATACTCTG
* *
24273491 GGAGAGCTTTTTCCTCAATACATTAGAGTATTCATCTTTAATTTCATCATTGTATCAGATTTTTT
66 AGAGAGCTTTTTCCTCAATACATTAGAGTATTCATCTTTAATTTCATCATAGTATCAGATTTTTT
24273556 A
131 A
24273557 TCC
1 TCC
24273560 AATTTTTGAG
Statistics
Matches: 125, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
131 125 1.00
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (131 bp):
TCCTTAATTAATTCAATGCTGCATGTATATATAGTTGTACATATTTCTAAGAAATACATACTCTG
AGAGAGCTTTTTCCTCAATACATTAGAGTATTCATCTTTAATTTCATCATAGTATCAGATTTTTT
A
Found at i:24277658 original size:85 final size:84
Alignment explanation
Indices: 24277533--24277783 Score: 265
Period size: 85 Copynumber: 3.0 Consensus size: 84
24277523 CTCTTTATAA
** * * * * *
24277533 ACATCCAAGGCACGGAGATGCCGGTCCTGCTCGAGACTCCCACACATCAAACGTCCTAGGTTGCT
1 ACATCCAA-GCACAAAGATGCCGATGCTGCTCGAG-CTCCCGCACATCCAACGTCCTAGGTTGCC
24277598 GATGGTGTCTGAAGCTCCCGC
64 GATGGTGTCTGAAGCTCCCGC
* *
24277619 ACATCCAAGCACAAAGATGCCGATGCTGCTCGATGCTCCCGCACCA-CCAACGTTCTAAGTTGCC
1 ACATCCAAGCACAAAGATGCCGATGCTGCTCGA-GCTCCCGCA-CATCCAACGTCCTAGGTTGCC
* *
24277683 GATGGTGT-TCGAGGCTCCGGC
64 GATGGTGTCT-GAAGCTCCCGC
* * * * *
24277704 ACATCGAAGCACAAAGGTGCTGATGCTGCTTGAGGCTCCCGTACATCCAACGTCCTAGGTTGCCG
1 ACATCCAAGCACAAAGATGCCGATGCTGCTCGA-GCTCCCGCACATCCAACGTCCTAGGTTGCCG
* *
24277769 GTGGTG-CCGAAGCTC
65 ATGGTGTCTGAAGCTC
24277784 ATATGCAGGC
Statistics
Matches: 138, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
84 9 0.07
85 118 0.86
86 11 0.08
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.20
Consensus pattern (84 bp):
ACATCCAAGCACAAAGATGCCGATGCTGCTCGAGCTCCCGCACATCCAACGTCCTAGGTTGCCGA
TGGTGTCTGAAGCTCCCGC
Found at i:24277659 original size:42 final size:42
Alignment explanation
Indices: 24277611--24277753 Score: 144
Period size: 42 Copynumber: 3.4 Consensus size: 42
24277601 GGTGTCTGAA
*
24277611 GCTCCCGCACATCCAAGCACAAAGATGCCGATGCTGCTCGAT
1 GCTCCCGCACATCCAAGCACAAAGATGCCGATGCTGCTCGAG
** * * * *
24277653 GCTCCCGCACCA-CCAACGTTCTAAGTTGCCGATGGTGTTCGAG
1 GCTCCCGCA-CATCCAA-GCACAAAGATGCCGATGCTGCTCGAG
* * * * *
24277696 GCTCCGGCACATCGAAGCACAAAGGTGCTGATGCTGCTTGAG
1 GCTCCCGCACATCCAAGCACAAAGATGCCGATGCTGCTCGAG
*
24277738 GCTCCCGTACATCCAA
1 GCTCCCGCACATCCAA
24277754 CGTCCTAGGT
Statistics
Matches: 78, Mismatches: 20, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
42 46 0.59
43 32 0.41
ACGTcount: A:0.23, C:0.33, G:0.24, T:0.20
Consensus pattern (42 bp):
GCTCCCGCACATCCAAGCACAAAGATGCCGATGCTGCTCGAG
Found at i:24279129 original size:101 final size:101
Alignment explanation
Indices: 24278952--24279135 Score: 264
Period size: 101 Copynumber: 1.8 Consensus size: 101
24278942 ATGAAGCCCA
* * *
24278952 AAAACTTGGGATAAGTGGGATTTAGATGCTCATTTAATTTGATACCAATAATTCTTTCAGTTCTC
1 AAAACTTGGGATAAGTGGGAATTAGATGCTCATTTAATTTGATACCAATAATTCTTTCAATGCTC
* *
24279017 TGATGCGATATATTCAACCAAGGCTTCTGACACCCT
66 TAATGCCATATATTCAACCAAGGCTTCTGACACCCT
* * *
24279053 AAAACTTGGGATAAGTGGGAATTAGGTGCTCATTT-ATTCTGATATGC-ATAATTCTTTCAATGG
1 AAAACTTGGGATAAGTGGGAATTAGATGCTCATTTAATT-TGATA-CCAATAATTCTTTCAATGC
24279116 TCTAATGCCATATATTCAAC
64 TCTAATGCCATATATTCAAC
24279136 TAAGACCAAA
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
100 3 0.04
101 69 0.95
102 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (101 bp):
AAAACTTGGGATAAGTGGGAATTAGATGCTCATTTAATTTGATACCAATAATTCTTTCAATGCTC
TAATGCCATATATTCAACCAAGGCTTCTGACACCCT
Found at i:24281223 original size:163 final size:162
Alignment explanation
Indices: 24280936--24281269 Score: 614
Period size: 163 Copynumber: 2.0 Consensus size: 162
24280926 ATATATCTTA
24280936 CTTAGTTCAACTGTGTAACTCTTTCAAAATTCTAAATATCTAAACCTTCTGCACATCATTTACCG
1 CTTA-TTCAACTGTGTAACTCTTTCAAAATTCTAAATATCTAAACCTTCTGCACATCATTTACCG
24281001 ATTTTCTATACTGAGTTGAACAACCATTTTGACCATAAACTCTTCTCACTATCTTACATTTTACC
65 ATTTTCTATACTGAGTTGAACAACCATTTTGACCATAAACTCTTCTCACTATCTTACATTTTACC
24281066 ATATTTTTAAGGTTGTCTTCATGTAATCTTTTGT
130 ATATTTTTAAGGTTGTCTTCATGTAATC-TTTGT
24281100 CTTATTCAACTGTGTAACTCTTTCAAAATTCTAAATATCTAAACCTTCTGCACATCATTTACCGA
1 CTTATTCAACTGTGTAACTCTTTCAAAATTCTAAATATCTAAACCTTCTGCACATCATTTACCGA
* * * *
24281165 TTTTCTGTACTTAGTTGAACAACCATTTTGACCATAAACTCTTCTCGCTATTTTACATTTTACCA
66 TTTTCTATACTGAGTTGAACAACCATTTTGACCATAAACTCTTCTCACTATCTTACATTTTACCA
24281230 TATTTTTAAGGTTGTCTTCATGTAATCTTTGT
131 TATTTTTAAGGTTGTCTTCATGTAATCTTTGT
24281262 CTTATTCA
1 CTTATTCA
24281270 TGTACTGTTC
Statistics
Matches: 166, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
162 13 0.08
163 149 0.90
164 4 0.02
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.43
Consensus pattern (162 bp):
CTTATTCAACTGTGTAACTCTTTCAAAATTCTAAATATCTAAACCTTCTGCACATCATTTACCGA
TTTTCTATACTGAGTTGAACAACCATTTTGACCATAAACTCTTCTCACTATCTTACATTTTACCA
TATTTTTAAGGTTGTCTTCATGTAATCTTTGT
Found at i:24284342 original size:20 final size:20
Alignment explanation
Indices: 24284314--24284354 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
24284304 TAATAAATTA
*
24284314 ATTGTCATCCTATAATTATT
1 ATTGCCATCCTATAATTATT
*
24284334 ATTGCCATCTTATAATTATT
1 ATTGCCATCCTATAATTATT
24284354 A
1 A
24284355 AATAATCTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.15, G:0.05, T:0.49
Consensus pattern (20 bp):
ATTGCCATCCTATAATTATT
Found at i:24285818 original size:21 final size:21
Alignment explanation
Indices: 24285792--24285832 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
24285782 ATGTTTTGAG
24285792 TAAATGGGGAAAAATATAATA
1 TAAATGGGGAAAAATATAATA
*
24285813 TAAATGGGGCAAAATATAAT
1 TAAATGGGGAAAAATATAAT
24285833 CTGAATCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.54, C:0.02, G:0.20, T:0.24
Consensus pattern (21 bp):
TAAATGGGGAAAAATATAATA
Found at i:24291605 original size:6 final size:6
Alignment explanation
Indices: 24291591--24291644 Score: 99
Period size: 6 Copynumber: 9.0 Consensus size: 6
24291581 GTGGGTTAAG
*
24291591 AAAAAC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
24291639 AAAATC
1 AAAATC
24291645 GAATTGTTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.69, C:0.17, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:24296026 original size:36 final size:36
Alignment explanation
Indices: 24295976--24296066 Score: 101
Period size: 36 Copynumber: 2.5 Consensus size: 36
24295966 ATGTGTGCCT
*
24295976 AGCACTAGTAGGATAAACCGACAATGAGTTACGCCC
1 AGCACTAGTAGGATAAACCGACAATGAGTTACACCC
* ** * *
24296012 AGCACTAGTCGGATAAATAGACAATGATTTGCACCC
1 AGCACTAGTAGGATAAACCGACAATGAGTTACACCC
** *
24296048 AGTTCTAGTTGGATAAACC
1 AGCACTAGTAGGATAAACC
24296067 AATGATATCA
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (36 bp):
AGCACTAGTAGGATAAACCGACAATGAGTTACACCC
Found at i:24296092 original size:76 final size:76
Alignment explanation
Indices: 24296012--24296152 Score: 176
Period size: 76 Copynumber: 1.9 Consensus size: 76
24296002 AGTTACGCCC
* * *** * *
24296012 AGCACTAGTCGGATA-AATAGACAATGATTTGCACCCAGTTCTAGTTGGATAAACCAATGATATC
1 AGCACTAGTCGGATATAACA-ACAAAGATTTGCACCCAACGCTAGTCGAATAAACCAATGATATC
24296076 AGATGTGTGCCT
65 AGATGTGTGCCT
* * *
24296088 AGCACTAGTTGGATATACCAACAAAGATTTGCGCCCAACGCTAGTCGAATAAACCAATGATATCA
1 AGCACTAGTCGGATATAACAACAAAGATTTGCACCCAACGCTAGTCGAATAAACCAATGATATCA
24296153 AGCACTCATT
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
76 52 0.96
77 2 0.04
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (76 bp):
AGCACTAGTCGGATATAACAACAAAGATTTGCACCCAACGCTAGTCGAATAAACCAATGATATCA
GATGTGTGCCT
Found at i:24302515 original size:23 final size:22
Alignment explanation
Indices: 24302489--24302534 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
24302479 TTTAATAATA
*
24302489 TGTTTTGGTATAACAAATTAAAG
1 TGTTTTGGAATAA-AAATTAAAG
* *
24302512 TGTTTTTGAATAAAAGTTAAAG
1 TGTTTTGGAATAAAAATTAAAG
24302534 T
1 T
24302535 TGAATAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.39, C:0.02, G:0.17, T:0.41
Consensus pattern (22 bp):
TGTTTTGGAATAAAAATTAAAG
Found at i:24306921 original size:40 final size:40
Alignment explanation
Indices: 24306821--24307085 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
24306811 GCTCCTCGTT
* * * *
24306821 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
24306861 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
24306900 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
24306940 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
24306980 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
24307020 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
24307061 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
24307086 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:24307045 original size:80 final size:80
Alignment explanation
Indices: 24306788--24307085 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
24306778 AAATCACGTA
* ** * * *
24306788 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
24306850 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
24306866 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
24306929 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
24306946 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
24307010 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
24307026 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
24307086 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:24307094 original size:41 final size:41
Alignment explanation
Indices: 24307017--24307094 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
24307007 TTTGTATCTC
* * *
24307017 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
24307058 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
24307095 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:24323317 original size:16 final size:16
Alignment explanation
Indices: 24323287--24323333 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
24323277 TCATAGGTCT
*
24323287 CCGA-CAAGATTCCAA
1 CCGATCAAGCTTCCAA
*
24323302 CCGATCGAGCTTCCAA
1 CCGATCAAGCTTCCAA
24323318 CCGATCAAGCTTCCAA
1 CCGATCAAGCTTCCAA
24323334 TAATCTATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
15 4 0.14
16 24 0.86
ACGTcount: A:0.32, C:0.36, G:0.15, T:0.17
Consensus pattern (16 bp):
CCGATCAAGCTTCCAA
Found at i:24332753 original size:26 final size:26
Alignment explanation
Indices: 24332717--24332766 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
24332707 ACTTATTTTC
24332717 TCAAAATTTTACCAAGGGCAAAATCA
1 TCAAAATTTTACCAAGGGCAAAATCA
* *
24332743 TCAAAATTTTATCAAGGGTAAAAT
1 TCAAAATTTTACCAAGGGCAAAAT
24332767 TGTAAAAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.46, C:0.14, G:0.12, T:0.28
Consensus pattern (26 bp):
TCAAAATTTTACCAAGGGCAAAATCA
Found at i:24336540 original size:27 final size:27
Alignment explanation
Indices: 24336501--24336572 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
24336491 CATAAACACG
*
24336501 CCAA-AGATGGAAGCCTTTATGGCGTT
1 CCAAGAGATGGAAGCCTTTATGGCGAT
*
24336527 CTAAGAGATGGAAGCCTTTATGGCGAT
1 CCAAGAGATGGAAGCCTTTATGGCGAT
* *
24336554 CCAAGATATGGAAACCTTT
1 CCAAGAGATGGAAGCCTTT
24336573 GTAGTGATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 3 0.08
27 37 0.93
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (27 bp):
CCAAGAGATGGAAGCCTTTATGGCGAT
Found at i:24343078 original size:30 final size:31
Alignment explanation
Indices: 24343030--24343096 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 31
24343020 TCTCGACATT
**
24343030 AAAT-TTTGGGAGCCTAA-TTAATTTTTAAA
1 AAATATTTGGGAGCCTAATTTAAACTTTAAA
**
24343059 AAATATTTGGGAGTTTAATTTAAACTTTAAA
1 AAATATTTGGGAGCCTAATTTAAACTTTAAA
24343090 AAA-ATTT
1 AAATATTT
24343097 AGGAAGCTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 4 0.12
30 15 0.47
31 13 0.41
ACGTcount: A:0.42, C:0.04, G:0.12, T:0.42
Consensus pattern (31 bp):
AAATATTTGGGAGCCTAATTTAAACTTTAAA
Found at i:24354410 original size:98 final size:98
Alignment explanation
Indices: 24354289--24354478 Score: 319
Period size: 98 Copynumber: 1.9 Consensus size: 98
24354279 ATATAAAAAT
*
24354289 TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACGCTAGGGCACGA-TCC
1 TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACGCTAGGGCACAATTCC
24354353 TTTTAGAATCCCAAACTCGGAATATTTCTTTTAA
66 -TTTAGAATCCCAAACTCGGAATATTTCTTTTAA
* * *
24354387 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACGCTAGGGCACAATTCC
*
24354452 TTTAGAATCTCAAACTCGGAATATTTC
66 TTTAGAATCCCAAACTCGGAATATTTC
24354479 CTTCATGATT
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
98 83 0.97
99 3 0.03
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.27
Consensus pattern (98 bp):
TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACGCTAGGGCACAATTCC
TTTAGAATCCCAAACTCGGAATATTTCTTTTAA
Found at i:24354760 original size:12 final size:12
Alignment explanation
Indices: 24354743--24354767 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24354733 AACGAGCAAC
24354743 ATAATATAAATG
1 ATAATATAAATG
24354755 ATAATATAAATG
1 ATAATATAAATG
24354767 A
1 A
24354768 AAGCACAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (12 bp):
ATAATATAAATG
Found at i:24356269 original size:14 final size:14
Alignment explanation
Indices: 24356250--24356282 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
24356240 GCCATGTTTG
24356250 TTTGGGCCACTGAA
1 TTTGGGCCACTGAA
24356264 TTTGGGCCACTGAA
1 TTTGGGCCACTGAA
24356278 TTTGG
1 TTTGG
24356283 TTTTGGGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.18, G:0.30, T:0.33
Consensus pattern (14 bp):
TTTGGGCCACTGAA
Found at i:24356684 original size:44 final size:44
Alignment explanation
Indices: 24356636--24357122 Score: 232
Period size: 44 Copynumber: 11.1 Consensus size: 44
24356626 TATCTTGGAA
* *
24356636 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTCGTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * *
24356680 AGATAAGA-TCTATAATCTTCAACCTCCTCCACTACTGCTTAGGG
1 AGATAAGATTC-GTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
24356724 AGACAAGGCTTGGT-GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTCGTCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * * *
24356768 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTTCTTAGAG
1 AGATAAGATTCGTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * *
24356812 AGATAAGA-TCTATAATCTTCAACCTTCTCCGCTACTGCTTAGGG
1 AGATAAGATTC-GTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * * *
24356856 AGACAAGGCTTGGT-GGCTTAAATCTACTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTCGTCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
*
24356900 AGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTCGTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * *
24356944 AGATAAGA-TCTATAATCTTCAACCTCCTCCACTATTGCTTAGGG
1 AGATAAGATTC-GTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * * *
24356988 AGACAAGGCTTAGT-GGCTTAAATCTACTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTCGTCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * * *
24357032 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTTCTTAGAG
1 AGATAAGATTCGTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * *
24357076 AGATAAGA-TCTATAATCTTCAACCTTCTCCGCTACTGCTTAGGG
1 AGATAAGATTC-GTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
24357120 AGA
1 AGA
24357123 CAAGGCTTGG
Statistics
Matches: 320, Mismatches: 92, Indels: 62
0.68 0.19 0.13
Matches are distributed among these distances:
42 18 0.06
43 33 0.10
44 233 0.73
45 16 0.05
46 20 0.06
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (44 bp):
AGATAAGATTCGTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:24356762 original size:132 final size:132
Alignment explanation
Indices: 24356612--24357196 Score: 1044
Period size: 132 Copynumber: 4.4 Consensus size: 132
24356602 TGTCAACTTT
*
24356612 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTACTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
*
24356677 GGGAGATAAGATCTATAATCTTCAACCTCCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCT
66 GAGAGATAAGATCTATAATCTTCAACCTCCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCT
24356742 TA
131 TA
* *
24356744 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTTCTTA
1 AATCTACTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
* *
24356809 GAGAGATAAGATCTATAATCTTCAACCTTCTCCGCTACTGCTTAGGGAGACAAGGCTTGGTGGCT
66 GAGAGATAAGATCTATAATCTTCAACCTCCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCT
24356874 TA
131 TA
*
24356876 AATCTACTTCCCACTATCTTGGAAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTACTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
* * *
24356941 GGGAGATAAGATCTATAATCTTCAACCTCCTCCACTATTGCTTAGGGAGACAAGGCTTAGTGGCT
66 GAGAGATAAGATCTATAATCTTCAACCTCCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCT
24357006 TA
131 TA
*
24357008 AATCTACTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTTCTTA
1 AATCTACTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
* *
24357073 GAGAGATAAGATCTATAATCTTCAACCTTCTCCGCTACTGCTTAGGGAGACAAGGCTTGGTGGCT
66 GAGAGATAAGATCTATAATCTTCAACCTCCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCT
24357138 TA
131 TA
*
24357140 AATCTACTTCCCACTATCTTGGAAAGATAAGATTCGCCGTTTTCGATCTGCTCCACT
1 AATCTACTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
24357197 GTCAATGCAG
Statistics
Matches: 433, Mismatches: 20, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 433 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (132 bp):
AATCTACTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
GAGAGATAAGATCTATAATCTTCAACCTCCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCT
TA
Done.