Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 83 of 205
Found at i:24639369 original size:19 final size:20
Alignment explanation
Indices: 24639323--24639371 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
24639313 GAAAAATGAC
24639323 TTATTTTCCGTTAACCTATAAG
1 TTATTTTCCGTTAACC--TAAG
* *
24639345 TCATTTTCCGTTGACC-AAG
1 TTATTTTCCGTTAACCTAAG
24639364 TTATTTTC
1 TTATTTTC
24639372 AAAAATGCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 10 0.42
22 14 0.58
ACGTcount: A:0.22, C:0.20, G:0.10, T:0.47
Consensus pattern (20 bp):
TTATTTTCCGTTAACCTAAG
Found at i:24640154 original size:14 final size:13
Alignment explanation
Indices: 24640135--24640181 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
24640125 AAAATTTTGC
24640135 TTTCTTTTTCCCT
1 TTTCTTTTTCCCT
*
24640148 ATTTCTTTCT-CCT
1 -TTTCTTTTTCCCT
*
24640161 TTTCTTTTTCATCT
1 TTTCTTTTTC-CCT
24640175 TTTCTTT
1 TTTCTTT
24640182 GCAAATAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
12 8 0.29
13 3 0.11
14 17 0.61
ACGTcount: A:0.04, C:0.26, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTCTTTTTCCCT
Found at i:24640154 original size:221 final size:221
Alignment explanation
Indices: 24639772--24640433 Score: 1195
Period size: 221 Copynumber: 3.0 Consensus size: 221
24639762 TCATGCTAAA
* *
24639772 ATCCTCCATTTTCCTTTTATTTTCAGCAAAAA-GGTAATGTTTCATCTAGACCCCTCAAATTTAG
1 ATCCTCCATTTTCCTTTTATTTTCAGCAAAAAGGGTAATTTTTCATCCAGACCCCTCAAATTTAG
24639836 AAAAGTCTAGGTATTTAATCTCTTTTCCTGATCACAAAAGAACTATAGCTTTCTTTTCCAATTAA
66 AAAAGTCTAGGTATTTAATCTCTTTTCCTGATCACAAAAGAACTATAGCTTTCTTTTCCAATTAA
*
24639901 ACTAAAATTTTGCTTTCTTTTTCCTTATTTCTTTCTCCTTTTCTTTTTCATCTTTTCTTTGCAAA
131 ACTAAAATTTTGCTTTCTTTTTCCCTATTTCTTTCTCCTTTTCTTTTTCATCTTTTCTTTGCAAA
24639966 TAATTTTCTCTCCAACTGCTAAAATT
196 TAATTTTCTCTCCAACTGCTAAAATT
*
24639992 ATCCTCCATTTTCCTTTTATTTTCAGCAAAAAGGGTAATTTTTCATCCAAACCCCTCAAATTTAG
1 ATCCTCCATTTTCCTTTTATTTTCAGCAAAAAGGGTAATTTTTCATCCAGACCCCTCAAATTTAG
*
24640057 AAAAGTCTAGGTATTTAATCTCTTTTCCTGATCACAAAAGAACTATAGCTTTCTTTTCTAATTAA
66 AAAAGTCTAGGTATTTAATCTCTTTTCCTGATCACAAAAGAACTATAGCTTTCTTTTCCAATTAA
24640122 ACTAAAATTTTGCTTTCTTTTTCCCTATTTCTTTCTCCTTTTCTTTTTCATCTTTTCTTTGCAAA
131 ACTAAAATTTTGCTTTCTTTTTCCCTATTTCTTTCTCCTTTTCTTTTTCATCTTTTCTTTGCAAA
24640187 TAATTTTCTCTCCAACTGCTAAAATT
196 TAATTTTCTCTCCAACTGCTAAAATT
* *
24640213 ATCCTCCATTTTCCTTTTATTTTTAGAAAAAAGGGTAATTTTTCATCCAGACCCCTCAAATTTAG
1 ATCCTCCATTTTCCTTTTATTTTCAGCAAAAAGGGTAATTTTTCATCCAGACCCCTCAAATTTAG
*
24640278 -AAAGTCTAGGTATTTAATCTATTTTCCTGATCACAAAAGAACTATAGCTTTC-TTTCCAATTAA
66 AAAAGTCTAGGTATTTAATCTCTTTTCCTGATCACAAAAGAACTATAGCTTTCTTTTCCAATTAA
* *
24640341 ACTAAAATTTTGCTTTCTTTTTCCCTATTTCTTTCTCCTTTACTTTTTCATCTCTTCTTTGCAAA
131 ACTAAAATTTTGCTTTCTTTTTCCCTATTTCTTTCTCCTTTTCTTTTTCATCTTTTCTTTGCAAA
* *
24640406 TAATTTTATCTCCAATTGCTAAAATT
196 TAATTTTCTCTCCAACTGCTAAAATT
24640432 AT
1 AT
24640434 TATTGCATCT
Statistics
Matches: 427, Mismatches: 14, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
219 99 0.23
220 83 0.19
221 245 0.57
ACGTcount: A:0.27, C:0.21, G:0.07, T:0.45
Consensus pattern (221 bp):
ATCCTCCATTTTCCTTTTATTTTCAGCAAAAAGGGTAATTTTTCATCCAGACCCCTCAAATTTAG
AAAAGTCTAGGTATTTAATCTCTTTTCCTGATCACAAAAGAACTATAGCTTTCTTTTCCAATTAA
ACTAAAATTTTGCTTTCTTTTTCCCTATTTCTTTCTCCTTTTCTTTTTCATCTTTTCTTTGCAAA
TAATTTTCTCTCCAACTGCTAAAATT
Found at i:24641533 original size:91 final size:88
Alignment explanation
Indices: 24641372--24641535 Score: 220
Period size: 91 Copynumber: 1.8 Consensus size: 88
24641362 ACTGGCAATT
*
24641372 TTAATTGCAAACACTAGTGGTTTATCCACAAACTACTGGCAACTATTATCTGCAAACCCGTTATG
1 TTAATTGCAAACACTAGTGGTTTATCCACAAACTACTGGCAACTATTATCTGCAAACCAGTTATG
24641437 CATTCACAGCCACTGGCAGTATA
66 CATTCACAGCCACTGGCAGTATA
* * *** *
24641460 TTAACTTGCAAACATTAGTGGTTTATCCATGATTTTTACTGGCAATTATTATCTGCAAACCAGTT
1 TTAA-TTGCAAACACTAGTGGTTTATCCA-CA-AACTACTGGCAACTATTATCTGCAAACCAGTT
* *
24641525 GTGTATTCACA
63 ATGCATTCACA
24641536 ACTACTGGAA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
88 4 0.06
89 23 0.36
90 1 0.02
91 36 0.56
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (88 bp):
TTAATTGCAAACACTAGTGGTTTATCCACAAACTACTGGCAACTATTATCTGCAAACCAGTTATG
CATTCACAGCCACTGGCAGTATA
Found at i:24641553 original size:91 final size:89
Alignment explanation
Indices: 24641372--24641555 Score: 208
Period size: 91 Copynumber: 2.1 Consensus size: 89
24641362 ACTGGCAATT
*
24641372 TTAA-TTGCAAACACTAGTGGTTTATCCACAAACTACTGGCAACTATTATCTGCAAACCCGTTAT
1 TTAACTTGCAAACACTAGTGGTTTATCCACAAACTACTGGCAACTATTATCTGCAAACCAGTTAT
* * **
24641436 GCATTCACAGCCACTGGCAGTATA
66 GCATTCACAACCACTGGAAACATA
* * *** *
24641460 TTAACTTGCAAACATTAGTGGTTTATCCATGATTTTTACTGGCAATTATTATCTGCAAACCAGTT
1 TTAACTTGCAAACACTAGTGGTTTATCCA-CA-AACTACTGGCAACTATTATCTGCAAACCAGTT
* * * *
24641525 GTGTATTCACAACTACTGGAAACGTA
64 ATGCATTCACAACCACTGGAAACATA
24641551 TTAAC
1 TTAAC
24641556 CAGCTACACT
Statistics
Matches: 78, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
88 4 0.05
89 23 0.29
90 1 0.01
91 50 0.64
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.33
Consensus pattern (89 bp):
TTAACTTGCAAACACTAGTGGTTTATCCACAAACTACTGGCAACTATTATCTGCAAACCAGTTAT
GCATTCACAACCACTGGAAACATA
Found at i:24653726 original size:102 final size:98
Alignment explanation
Indices: 24653594--24653835 Score: 315
Period size: 102 Copynumber: 2.4 Consensus size: 98
24653584 CACTATAGGC
* * * * *
24653594 AACAACATTAGGCTCAATG-TTATGCTTTATCATTGCGTCAACAATATCTTCAGTTTCAGAAACC
1 AACAACATCAGGCTCAATGCCT-TGCTTTATCATTGTGTCAACAACATCTTCAGCTTCAGAAACC
* *
24653658 ATTCCTTCCCTGCAATGCGCAACAACCAATATATT
65 ATTCCTTCCCTACAATACGCAACAACCAATATA-T
* * *
24653693 ATATGTAACATCAGGCTCAATGCCTTGCTTTATCATTGTGCCAACAACATCTTTAGCTTCAGAAA
1 A-A--CAACATCAGGCTCAATGCCTTGCTTTATCATTGTGTCAACAACATCTTCAGCTTCAGAAA
* *
24653758 CCATTCCTTCCTTACAATACGCATCAACCAATATAT
63 CCATTCCTTCCCTACAATACGCAACAACCAATATAT
*
24653794 AACAACATCAGGCTCAATGCCTTGCTTTTTCATTGTGTCAAC
1 AACAACATCAGGCTCAATGCCTTGCTTTATCATTGTGTCAAC
24653836 GGTATCTGTT
Statistics
Matches: 124, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
98 37 0.30
99 1 0.01
100 2 0.02
101 2 0.02
102 81 0.65
103 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (98 bp):
AACAACATCAGGCTCAATGCCTTGCTTTATCATTGTGTCAACAACATCTTCAGCTTCAGAAACCA
TTCCTTCCCTACAATACGCAACAACCAATATAT
Found at i:24660506 original size:105 final size:105
Alignment explanation
Indices: 24660381--24660586 Score: 245
Period size: 105 Copynumber: 2.0 Consensus size: 105
24660371 AGGTAACAAC
* * * * *
24660381 ATTAGGCTCAATGCTATGCTT-TATCATTGTGTCAACAATATCTTCAGCTTTAGAAACCTTCCCT
1 ATTAGGCTCAATGCTATGCTTCT-TCATTGTATCAACAATATCTGCAGCTTCAAAAACCTTCCCA
*
24660445 TCCTTGCAATGCGCATCAACCAATATATTATATGTGACTAA
65 TCCTTGCAATGCGCATCAACCAATATATTATACGTGACTAA
** ** * *
24660486 ATTAGGCTCAATGCCT-TGCTTCTTCATTGTATCAACGGTATCTGGTGCTTCAAAAATCTTTCCA
1 ATTAGGCTCAATG-CTATGCTTCTTCATTGTATCAACAATATCTGCAGCTTCAAAAACCTTCCCA
* * *
24660550 TCCTTGCAGTGTGCATCAATCAATATATTATACGTGA
65 TCCTTGCAATGCGCATCAACCAATATATTATACGTGA
24660587 AAATATTAAG
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
105 81 0.96
106 3 0.04
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (105 bp):
ATTAGGCTCAATGCTATGCTTCTTCATTGTATCAACAATATCTGCAGCTTCAAAAACCTTCCCAT
CCTTGCAATGCGCATCAACCAATATATTATACGTGACTAA
Found at i:24664194 original size:105 final size:105
Alignment explanation
Indices: 24664062--24664292 Score: 311
Period size: 105 Copynumber: 2.2 Consensus size: 105
24664052 TAATTAATGC
* *
24664062 ATTATACGTAACAACATTAGGCTCAATGACTTG-TTTTATCATTGTGTCAACGGTATCTATGGCT
1 ATTATACGTAACAACATCAAGCTCAATGACTTGCTTTT-TCATTGTGTCAACGGTATCTATGGCT
*
24664126 TCAAAAACCATCCCTTCCCTGCAATGCGCATCAACCAATAT
65 TCAAAAACCATCCCATCCCTGCAATGCGCATCAACCAATAT
* * *
24664167 ATTATACGTAACAACATCAAGCTCAATGCCTTGCTTTTTCATTGTGTCAATGGTATCTATTGCTT
1 ATTATACGTAACAACATCAAGCTCAATGACTTGCTTTTTCATTGTGTCAACGGTATCTATGGCTT
* * ** * *
24664232 TAGAATTCTTCCCATCCTTGCAATGCGCATCAACCAATAT
66 CAAAAACCATCCCATCCCTGCAATGCGCATCAACCAATAT
* * *
24664272 ATCATACGTGACAATATCAAG
1 ATTATACGTAACAACATCAAG
24664293 TGAAATATTG
Statistics
Matches: 110, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
105 106 0.96
106 4 0.04
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (105 bp):
ATTATACGTAACAACATCAAGCTCAATGACTTGCTTTTTCATTGTGTCAACGGTATCTATGGCTT
CAAAAACCATCCCATCCCTGCAATGCGCATCAACCAATAT
Found at i:24665860 original size:4 final size:4
Alignment explanation
Indices: 24665851--24665876 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
24665841 TTACCTTCTA
24665851 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
24665877 CTTTTCTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:24668727 original size:22 final size:21
Alignment explanation
Indices: 24668702--24668749 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
24668692 TACAAATTAA
*
24668702 ATCTCTAATATTACATAATCAT
1 ATCTCTAAGATTACAT-ATCAT
*
24668724 ATCTTCTAAGATTGCATATCAT
1 ATC-TCTAAGATTACATATCAT
24668746 ATCT
1 ATCT
24668750 AAGATTGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 1 0.04
22 11 0.48
23 11 0.48
ACGTcount: A:0.35, C:0.19, G:0.04, T:0.42
Consensus pattern (21 bp):
ATCTCTAAGATTACATATCAT
Found at i:24668731 original size:23 final size:22
Alignment explanation
Indices: 24668705--24668749 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
24668695 AAATTAAATC
*
24668705 TCTAATATTACATAATCATATCT
1 TCTAAGATTACAT-ATCATATCT
*
24668728 TCTAAGATTGCATATCATATCT
1 TCTAAGATTACATATCATATCT
24668750 AAGATTGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.36, C:0.18, G:0.04, T:0.42
Consensus pattern (22 bp):
TCTAAGATTACATATCATATCT
Found at i:24679919 original size:20 final size:20
Alignment explanation
Indices: 24679896--24679939 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
24679886 TAAAGAAAGT
24679896 AAAT-AAAATGGAAAGTAACA
1 AAATGAAAAT-GAAAGTAACA
* *
24679916 AAATGTAAATGAAAGTAAGA
1 AAATGAAAATGAAAGTAACA
24679936 AAAT
1 AAAT
24679940 TTGAAAGGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.64, C:0.02, G:0.16, T:0.18
Consensus pattern (20 bp):
AAATGAAAATGAAAGTAACA
Found at i:24683502 original size:27 final size:27
Alignment explanation
Indices: 24683472--24683649 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24683462 ATATTGAGTC
* * * *
24683472 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
24683499 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24683526 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
24683554 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
24683581 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
24683608 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24683635 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24683650 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:24683611 original size:82 final size:81
Alignment explanation
Indices: 24683493--24683648 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24683483 TGCTATATAA
* *
24683493 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
24683558 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
24683575 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
24683639 CACTTAGTGC
65 CACTTAGTGC
24683649 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24691692 original size:27 final size:27
Alignment explanation
Indices: 24691662--24691839 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24691652 ATATTGAGTC
* * * *
24691662 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
24691689 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24691716 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
24691744 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
24691771 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
24691798 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24691825 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24691840 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:24691801 original size:82 final size:81
Alignment explanation
Indices: 24691683--24691838 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24691673 TGCTATATAA
* *
24691683 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
24691748 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
24691765 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
24691829 CACTTAGTGC
65 CACTTAGTGC
24691839 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24700900 original size:10 final size:10
Alignment explanation
Indices: 24700885--24700909 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
24700875 AAGTTTTCGA
24700885 ATATACATAT
1 ATATACATAT
24700895 ATATACATAT
1 ATATACATAT
24700905 ATATA
1 ATATA
24700910 TACATGTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (10 bp):
ATATACATAT
Found at i:24705392 original size:105 final size:105
Alignment explanation
Indices: 24705270--24705471 Score: 291
Period size: 105 Copynumber: 1.9 Consensus size: 105
24705260 AACAACATTT
* * * * *
24705270 GGCTCAATGCCTTGCTTTCTCATTGTGTCAACAATATTTTCAGCTTCAGA-AACCATCCC-TTCT
1 GGCTCAATGCCTCGCTTTCTCATTGTGCCAACAATATTTACAGCATCA-ACAACCATCCCATCCT
24705333 CTGCAATGTGCATCAACCAATATATTATACGTGATAACATCA
65 -TGCAATGTGCATCAACCAATATATTATACGTGATAACATCA
*
24705375 GGCTCAATGCCTCGCTTTCTCATTGTGCCAACAATATTTACAGCATCAACAATCATCCCATCCTT
1 GGCTCAATGCCTCGCTTTCTCATTGTGCCAACAATATTTACAGCATCAACAACCATCCCATCCTT
** *
24705440 GCAATGTGCATTGATCAATATATTATACGTGA
66 GCAATGTGCATCAACCAATATATTATACGTGA
24705472 CAATATTAAG
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
104 1 0.01
105 82 0.95
106 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.33
Consensus pattern (105 bp):
GGCTCAATGCCTCGCTTTCTCATTGTGCCAACAATATTTACAGCATCAACAACCATCCCATCCTT
GCAATGTGCATCAACCAATATATTATACGTGATAACATCA
Found at i:24715858 original size:6 final size:6
Alignment explanation
Indices: 24715847--24715882 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
24715837 TTGAAAAAGT
24715847 TTTTAA TTTTAA GTTTTAA TTTTAA TTTTAA GTTTT
1 TTTTAA TTTTAA -TTTTAA TTTTAA TTTTAA -TTTT
24715883 GTTTTGTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 18 0.64
7 10 0.36
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (6 bp):
TTTTAA
Found at i:24715865 original size:13 final size:12
Alignment explanation
Indices: 24715847--24715882 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 12
24715837 TTGAAAAAGT
24715847 TTTTAATTTTAA
1 TTTTAATTTTAA
24715859 GTTTTAATTTTAA
1 -TTTTAATTTTAA
24715872 TTTTAAGTTTT
1 TTTTAA-TTTT
24715883 GTTTTGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 6 0.27
13 16 0.73
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (12 bp):
TTTTAATTTTAA
Found at i:24717567 original size:13 final size:13
Alignment explanation
Indices: 24717549--24717574 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24717539 CAATTCTACC
24717549 ATAATTTTTATAG
1 ATAATTTTTATAG
24717562 ATAATTTTTATAG
1 ATAATTTTTATAG
24717575 CTAACATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
ATAATTTTTATAG
Found at i:24719368 original size:16 final size:16
Alignment explanation
Indices: 24719347--24719377 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24719337 GAGTATTATC
24719347 TCTATTTTGAAAATTT
1 TCTATTTTGAAAATTT
*
24719363 TCTATTTTTAAAATT
1 TCTATTTTGAAAATT
24719378 GAGTAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.58
Consensus pattern (16 bp):
TCTATTTTGAAAATTT
Found at i:24719816 original size:29 final size:30
Alignment explanation
Indices: 24719758--24719816 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
24719748 AAAATATGTG
* * *
24719758 TTAAAAATATAAATAGGTATTTAGGCATTT
1 TTAAAAATATAAATAGATATATACGCATTT
*
24719788 TTAAAAATA-AAATAGATATATACGTATTT
1 TTAAAAATATAAATAGATATATACGCATTT
24719817 ATAGATATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.39
Consensus pattern (30 bp):
TTAAAAATATAAATAGATATATACGCATTT
Found at i:24719914 original size:19 final size:20
Alignment explanation
Indices: 24719870--24719915 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
24719860 CATAATATAT
**
24719870 ATAAATATTAAATAATAATT
1 ATAAATATTAAATAATAAAA
24719890 AT-AATATTAAA-AATAAAA
1 ATAAATATTAAATAATAAAA
24719908 ATAAATAT
1 ATAAATAT
24719916 ACGTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 7 0.30
19 14 0.61
20 2 0.09
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAAATATTAAATAATAAAA
Found at i:24721412 original size:44 final size:45
Alignment explanation
Indices: 24721298--24721414 Score: 114
Period size: 44 Copynumber: 2.6 Consensus size: 45
24721288 TTCTAATCCA
* * * *
24721298 CTCCACTACAACTTTTAGGGAGATAGGA-TTTGTTCATTCAATCTG
1 CTCCACTGCAAC-TTTAGGGAGATAAGACTTTCTTCACTCAATCTG
* * * * *
24721343 CCCCACTGTAA-TTTCAGGGGGATAAGACTTTCTT-ACTCAGTTTG
1 CTCCACTGCAACTTT-AGGGAGATAAGACTTTCTTCACTCAATCTG
24721387 CTCCACTGCAACTTTAGGGAGATAAGAC
1 CTCCACTGCAACTTTAGGGAGATAAGAC
24721415 CAGATGCGAT
Statistics
Matches: 57, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
43 3 0.05
44 38 0.67
45 16 0.28
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (45 bp):
CTCCACTGCAACTTTAGGGAGATAAGACTTTCTTCACTCAATCTG
Found at i:24721493 original size:44 final size:41
Alignment explanation
Indices: 24721385--24721494 Score: 105
Period size: 40 Copynumber: 2.6 Consensus size: 41
24721375 TTACTCAGTT
* *
24721385 TGCTCCACTGCAACTTTAGGGAGATAAGACCAGATGCGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACCAGATGCAATC
* * * * * **
24721426 TGCT-CTCTGTAACTTCAGAGAGATAAGATCTGTAGTTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-C--CAGATGCAATC
24721469 TGCTCCACTGCAACTTCAGGGAGATA
1 TGCTCCACTGCAACTTCAGGGAGATA
24721495 GAATTATTGG
Statistics
Matches: 53, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
40 20 0.38
41 5 0.09
43 10 0.19
44 18 0.34
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (41 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGACCAGATGCAATC
Found at i:24722133 original size:126 final size:122
Alignment explanation
Indices: 24721868--24727616 Score: 8128
Period size: 126 Copynumber: 45.5 Consensus size: 122
24721858 TTCAACCTAC
* ** * * * *
24721868 TCCACTGCTGCTCAGGGAGATAGGGTTCACGATCTTCAACCTATTCCACTGCTGACCAAGGAAAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
* * * * * * *
24721933 AAGACCTACAATCTTCAATCTATTCCACTGCT-ACCCAGAGAGATAGAGTTCTCAATCTTCAACC
66 AGGA--T--TATCTTTAACCTATTCCACTACTGA-CCAGGGAGATAGAG--CT--AT-TT-AATC
24721997 TAT
120 TAT
* * * * * * *
24722000 TTCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAGAGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
* * * * * * **
24722065 AGGA-T-TCTTTAATCTATTCTACTGCTGCCCAAGGAGATAGAATTCTCAATCTTCAGGCTAT
66 AGGATTATCTTTAACCTATTCCACTACTGACCAGGGAGATAG-A-GCT--AT-TT-AATCTAT
* * * * * *
24722126 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCAATGCTGTCCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24722191 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24722252 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24722317 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24722378 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24722443 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24722504 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24722569 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24722630 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24722695 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24722756 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24722821 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24722882 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24722947 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24723008 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24723073 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24723134 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24723199 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24723260 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24723325 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24723386 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24723451 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24723512 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24723577 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24723638 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24723703 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24723764 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24723829 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24723890 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24723955 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24724016 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24724081 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24724142 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24724207 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24724268 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24724333 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24724394 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24724459 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24724520 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24724585 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24724646 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24724711 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24724772 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24724837 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24724898 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24724963 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24725024 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24725089 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24725150 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24725215 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24725276 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24725341 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24725402 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24725467 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24725528 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24725593 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24725654 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24725719 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24725780 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24725845 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24725906 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24725971 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24726032 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24726097 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24726158 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24726223 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24726284 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24726349 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24726410 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24726475 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24726536 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
* * * * *
24726601 AGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAGAGAGATAG-GATTCTTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAG-CTATTTAATCTAT
* * **
24726662 TCTACTGCTGCCCAAGGAGATAGAATTCTCAATCTTCAGGCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
* * * * * *
24726727 AGGATTCACAATCTTTAACCTATTCCAATGCTGTCCAGGGAGATAGGATTCACAATCTTTAACCT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATA-GA---GC--TATTTAATCT
24726792 AT
121 AT
* * * * *
24726794 TCCACTACTGACCAGGGAGATAG-A-GCT--AT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
* * * * * * *
24726853 AGAATTCTCAATCTTCAACCTATTCCACTACTAACCAGGGAGGTAGGATTCACAATCTTTAACCT
66 AGGA-T-T--ATCTTTAACCTATTCCACTACTGACCAGGGAGATA-GA---GC--TATTTAATCT
24726918 AT
121 AT
* * ** * * *
24726920 TCTACTGTTGTTCAGGGAGATAGGAA---TC--T-TT-AATCTATTCCACTGCTGCCCAGGTAGA
1 TCCACTGCTGCCCAGGGAGATA-GAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGA
* * * * * *
24726978 TAGAATTCTCAATCTTCT-GCCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAA-
65 TAGGA-T-T--ATCTT-TAACCTATTCCACTACTGACCAGGGAGATA-GA---GC--TATTTAAT
24727041 CTTAT
119 C-TAT
* * ** * * *
24727046 TCCACCGCTGACCAGGGAGATAG--GGCTC--T-TT-AATCTATTCCACTGCTGCCCAGGTAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
* * * * * *
24727105 AGAATTCTCAATCTTCT-GCCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAA-C
66 AGGA-T-T--ATCTT-TAACCTATTCCACTACTGACCAGGGAGATA-GA---GC--TATTTAATC
24727168 TTAT
120 -TAT
* * ** * *
24727172 TCCACCGCTGACCAGGGAGATAG--GGCTC--T-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
* * * * *
24727231 AGGATTCACAATCTTTAACCTATTCTACTGCTGTCCAGGGAGATAG-GATTCTTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAG-CTATTTAATCTAT
* * ** *
24727292 TCCACTGCTGCTCAGGTAGATAGAATTCTCAATCTTCTGCCTATTCCACTGCTGACTAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
* ** * *
24727357 AGGATTCACAATCTTTAACTTATTCCACCGCTGACCAGGGAGATAGGGCTCTTTAATCTAT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
* *
24727418 TCCACTGCTGCCTAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
* * *
24727483 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGGATTCACAATCTTTAACCT
66 AGGATT----ATCTTTAACCTATTCCACTACTGACCAGGGAGATA-GA---GC--TATTTAATCT
24727548 AT
121 AT
* * * * * **
24727550 TCCACTGCTGTCCAAGGAGATAGGATTCTTTAATCTTTAGTCTATTCCACTGCTGACCAGGGAGA
1 TCCACTGCTGCCCAGGGAGATAGAATTC-TCAATCTTCAACCTATTCCACTGCTGACCAGGGAGA
24727615 TA
65 TA
24727617 AGGCTGGGGT
Statistics
Matches: 5442, Mismatches: 129, Indels: 91
0.96 0.02 0.02
Matches are distributed among these distances:
120 29 0.01
121 1 0.00
122 3 0.00
124 2 0.00
125 8 0.00
126 5189 0.95
127 11 0.00
128 6 0.00
130 5 0.00
131 2 0.00
132 153 0.03
133 33 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (122 bp):
TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
AGGATTATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
Found at i:24722395 original size:252 final size:252
Alignment explanation
Indices: 24721868--24727616 Score: 9641
Period size: 252 Copynumber: 22.8 Consensus size: 252
24721858 TTCAACCTAC
* ** * * * *
24721868 TCCACTGCTGCTCAGGGAGATAGGGTTCACGATCTTCAACCTATTCCACTGCTGACCAAGGAAAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
* * * * * * *
24721933 AAGA-CCTACAATCTTCAATCTATTCCACTGCT-ACCCAGAGAGATAGAGTTCTCAATCTTCAAC
66 AGGATTC-ACAATCTTTAACCTATTCCACTACTGA-CCAGGGAGATAGAG--CT--AT-TT-AAT
* * * * * * *
24721996 CTATTTCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAGAG
123 CTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGG
* * * * * *
24722061 AGATAGGA-T-----TCTTTAATCTATTCTACTGCTGCCCAAGGAGATAGAATTCTCAATCTTCA
188 AGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAG-A-GCT--AT-TT-A
**
24722120 GGCTAT
247 ATCTAT
* * * * * *
24722126 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCAATGCTGTCCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24722191 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24722256 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24722321 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24722378 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24722443 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24722508 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24722573 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24722630 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24722695 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24722760 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24722825 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24722882 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24722947 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24723012 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24723077 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24723134 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24723199 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24723264 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24723329 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24723386 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24723451 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24723516 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24723581 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24723638 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24723703 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24723768 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24723833 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24723890 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24723955 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24724020 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24724085 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24724142 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24724207 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24724272 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24724337 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24724394 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24724459 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24724524 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24724589 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24724646 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24724711 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24724776 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24724841 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24724898 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24724963 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24725028 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24725093 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24725150 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24725215 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24725280 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24725345 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24725402 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24725467 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24725532 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24725597 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24725654 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24725719 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24725784 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24725849 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24725906 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24725971 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24726036 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24726101 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24726158 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24726223 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24726288 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24726353 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24726410 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24726475 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24726540 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
* * * * *
24726605 TTCACAATCTTTAACCTATTCCACTGCTGTCCAGAGAGATAG-GATTCTTTAATCTAT
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAG-CTATTTAATCTAT
* * **
24726662 TCTACTGCTGCCCAAGGAGATAGAATTCTCAATCTTCAGGCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
* * * * * *
24726727 AGGATTCACAATCTTTAACCTATTCCAATGCTGTCCAGGGAGATAGGATTCACAATCTTTAACCT
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATA-GA---GC--TATTTAATCT
* * * * *
24726792 ATTCCACTACTGACCAGGGAGATAG-A-GCT--AT-TT-AATCTATTCCACTGCTGCCCAGGGAG
125 ATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAG
* * * * * * * *
24726851 ATAGAATTCTCAATCTTCAACCTATTCCACTACTAACCAGGGAGGTAGGATTCACAATCTTTAAC
190 ATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATA-GA---GC--TATTTAAT
24726916 CTAT
249 CTAT
* * ** * * *
24726920 TCTACTGTTGTTCAGGGAGATAGGAA---TC--T-TT-AATCTATTCCACTGCTGCCCAGGTAGA
1 TCCACTGCTGCCCAGGGAGATA-GAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGA
* * * * * * *
24726978 TAGAATTCTCAATCTTCT-GCCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAA-
65 TAGGATTCACAATCTT-TAACCTATTCCACTACTGACCAGGGAGATA-GA---GC--TATTTAAT
* * ** * *
24727041 CTTATTCCACCGCTGACCAGGGAGATAG--GGCTC--T-TT-AATCTATTCCACTGCTGCCCAGG
123 C-TATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGG
* * * * * * * *
24727100 TAGATAGAATTCTCAATCTTCT-GCCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTT
187 GAGATAGGATTCACAATCTT-TAACCTATTCCACTACTGACCAGGGAGATA-GA---GC--TATT
24727164 TAA-CTTAT
245 TAATC-TAT
* * ** * *
24727172 TCCACCGCTGACCAGGGAGATAG--GGCTC--T-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
* * * * *
24727231 AGGATTCACAATCTTTAACCTATTCTACTGCTGTCCAGGGAGATAG-GATTCTTTAATCTATTCC
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAG-CTATTTAATCTATTCC
* * ** *
24727295 ACTGCTGCTCAGGTAGATAGAATTCTCAATCTTCTGCCTATTCCACTGCTGACTAGGGAGATAGG
130 ACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGG
* ** * *
24727360 ATTCACAATCTTTAACTTATTCCACCGCTGACCAGGGAGATAGGGCTCTTTAATCTAT
195 ATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
* *
24727418 TCCACTGCTGCCTAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
* * *
24727483 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGGATTCACAATCTTTAACCT
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATA-GA---GC--TATTTAATCT
* * * * * **
24727548 ATTCCACTGCTGTCCAAGGAGATAGGATTCTTTAATCTTTAGTCTATTCCACTGCTGACCAGGGA
125 ATTCCACTGCTGCCCAGGGAGATAGAATTC-TCAATCTTCAACCTATTCCACTGCTGACCAGGGA
24727613 GATA
189 GATA
24727617 AGGCTGGGGT
Statistics
Matches: 5285, Mismatches: 149, Indels: 113
0.95 0.03 0.02
Matches are distributed among these distances:
246 59 0.01
247 2 0.00
248 7 0.00
250 2 0.00
251 12 0.00
252 4915 0.93
253 14 0.00
254 7 0.00
256 9 0.00
257 2 0.00
258 218 0.04
259 38 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (252 bp):
TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
Found at i:24722569 original size:378 final size:378
Alignment explanation
Indices: 24721868--24727616 Score: 9641
Period size: 378 Copynumber: 15.2 Consensus size: 378
24721858 TTCAACCTAC
* ** * * * *
24721868 TCCACTGCTGCTCAGGGAGATAGGGTTCACGATCTTCAACCTATTCCACTGCTGACCAAGGAAAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
* * * * * * *
24721933 AAGA-CCTACAATCTTCAATCTATTCCACTGCT-ACCCAGAGAGATAGAGTTCTCAATCTTCAAC
66 AGGATTC-ACAATCTTTAACCTATTCCACTACTGA-CCAGGGAGATAGAG--CT--AT-TT-AAT
* * * * * * *
24721996 CTATTTCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAGAG
123 CTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGG
* * * * * *
24722061 AGATAGGA-T-----TCTTTAATCTATTCTACTGCTGCCCAAGGAGATAGAATTCTCAATCTTCA
188 AGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAG-A-GCT--AT-TT-A
** * * * * * *
24722120 GGCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCAATGCTGTCCAG
247 ATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAG
24722185 GGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCT
312 GGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCT
24722250 AT
377 AT
24722252 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24722317 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24722382 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24722447 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
24722512 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
261 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
24722577 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
326 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24722630 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24722695 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24722760 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24722825 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
24722890 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
261 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
24722955 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
326 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24723008 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24723073 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24723138 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24723203 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
24723268 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
261 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
24723333 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
326 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24723386 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24723451 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24723516 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24723581 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
24723646 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
261 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
24723711 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
326 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24723764 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24723829 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24723894 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24723959 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
24724024 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
261 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
24724089 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
326 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24724142 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24724207 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24724272 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24724337 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
24724402 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
261 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
24724467 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
326 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24724520 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24724585 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24724650 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24724715 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
24724780 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
261 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
24724845 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
326 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24724898 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24724963 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24725028 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24725093 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
24725158 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
261 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
24725223 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
326 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24725276 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24725341 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24725406 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24725471 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
24725536 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
261 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
24725601 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
326 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24725654 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24725719 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24725784 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24725849 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
24725914 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
261 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
24725979 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
326 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24726032 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24726097 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24726162 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
24726227 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
24726292 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
261 TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
24726357 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
326 CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
24726410 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
24726475 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
24726540 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
131 CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
* * * * * *
24726605 TTCACAATCTTTAACCTATTCCACTGCTGTCCAGAGAGATAG-GATTCTTTAATCTATTCTACTG
196 TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAG-CTATTTAATCTATTCCACTG
* **
24726669 CTGCCCAAGGAGATAGAATTCTCAATCTTCAGGCTATTCCACTGCTGACCAGGGAGATAGGATTC
260 CTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC
* * * * * *
24726734 ACAATCTTTAACCTATTCCAATGCTGTCCAGGGAGATAGGATTCACAATCTTTAACCTAT
325 ACAATCTTTAACCTATTCCACTACTGACCAGGGAGATA-GA---GC--TATTTAATCTAT
* * * * *
24726794 TCCACTACTGACCAGGGAGATAG-A-GCT--AT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
* * * * * * * *
24726853 AGAATTCTCAATCTTCAACCTATTCCACTACTAACCAGGGAGGTAGGATTCACAATCTTTAACCT
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATA-GA---GC--TATTTAATCT
* * ** * * *
24726918 ATTCTACTGTTGTTCAGGGAGATAGGAA---TC--T-TT-AATCTATTCCACTGCTGCCCAGGTA
125 ATTCCACTGCTGCCCAGGGAGATA-GAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGA
* * * * * * *
24726976 GATAGAATTCTCAATCTTCT-GCCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTA
189 GATAGGATTCACAATCTT-TAACCTATTCCACTACTGACCAGGGAGATA-GA---GC--TATTTA
* * ** * *
24727040 A-CTTATTCCACCGCTGACCAGGGAGATAG--GGCTC--T-TT-AATCTATTCCACTGCTGCCCA
247 ATC-TATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCA
* * * * * * * *
24727098 GGTAGATAGAATTCTCAATCTTCT-GCCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATC
311 GGGAGATAGGATTCACAATCTT-TAACCTATTCCACTACTGACCAGGGAGATA-GA---GC--TA
24727162 TTTAA-CTTAT
369 TTTAATC-TAT
* * ** * *
24727172 TCCACCGCTGACCAGGGAGATAG--GGCTC--T-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
* * * * *
24727231 AGGATTCACAATCTTTAACCTATTCTACTGCTGTCCAGGGAGATAG-GATTCTTTAATCTATTCC
66 AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAG-CTATTTAATCTATTCC
* * ** *
24727295 ACTGCTGCTCAGGTAGATAGAATTCTCAATCTTCTGCCTATTCCACTGCTGACTAGGGAGATAGG
130 ACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGG
* ** * *
24727360 ATTCACAATCTTTAACTTATTCCACCGCTGACCAGGGAGATAGGGCTCTTTAATCTATTCCACTG
195 ATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTG
* *
24727425 CTGCCTAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGATTC
260 CTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC
* * *
24727490 ACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGGATTCACAATCTTTAACCTAT
325 ACAATCTTTAACCTATTCCACTACTGACCAGGGAGATA-GA---GC--TATTTAATCTAT
* * * * * **
24727550 TCCACTGCTGTCCAAGGAGATAGGATTCTTTAATCTTTAGTCTATTCCACTGCTGACCAGGGAGA
1 TCCACTGCTGCCCAGGGAGATAGAATTC-TCAATCTTCAACCTATTCCACTGCTGACCAGGGAGA
24727615 TA
65 TA
24727617 AGGCTGGGGT
Statistics
Matches: 5158, Mismatches: 147, Indels: 119
0.95 0.03 0.02
Matches are distributed among these distances:
371 3 0.00
372 59 0.01
373 1 0.00
374 6 0.00
376 2 0.00
377 10 0.00
378 4783 0.93
379 19 0.00
380 9 0.00
381 1 0.00
382 13 0.00
383 4 0.00
384 216 0.04
385 32 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (378 bp):
TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
AGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCA
CTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
TTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTATTCCACTGC
TGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
CAATCTTTAACCTATTCCACTACTGACCAGGGAGATAGAGCTATTTAATCTAT
Found at i:24727616 original size:89 final size:88
Alignment explanation
Indices: 24721868--24727616 Score: 5063
Period size: 82 Copynumber: 68.2 Consensus size: 88
24721858 TTCAACCTAC
** * * *
24721868 TCCACTGCTG-CTCAGGGAGATAGGGTTCACGATCTTCAACCTATTCCACTGCTGACCAAGGAAA
1 TCCACTGCTGAC-CAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGA
* * *
24721932 TAAGA-CCTACAATCTTCAATCTAT
65 TAGGATTC-ACAATCTTTAATCTAT
* * * * * *
24721956 TCCACTGCT-ACCCAGAGAGATAGAGTTCTCAATCTTCAACCTATTTCACTGCTGACCAGGGAGA
1 TCCACTGCTGA-CCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGA
*
24722020 TAGGATTCACAATCTTTAACCTAT
65 TAGGATTCACAATCTTTAATCTAT
* * * * * * *
24722044 TCCACTGCTGTCCAGAGAGATAGGATT--C--T-TT-AATCTATTCTACTGCTGCCCAAGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * **
24722103 AGAATTCTCAATCTTCAGGCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * *
24722126 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCAATGCTGTCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24722191 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24722214 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24722273 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * *
24722296 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24722361 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24722378 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24722443 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24722466 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24722525 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * *
24722548 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24722613 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24722630 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24722695 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24722718 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24722777 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * *
24722800 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24722865 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24722882 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24722947 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24722970 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24723029 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * *
24723052 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24723117 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24723134 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24723199 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24723222 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24723281 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * *
24723304 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24723369 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24723386 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24723451 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24723474 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24723533 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * *
24723556 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24723621 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24723638 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24723703 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24723726 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24723785 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * *
24723808 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24723873 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24723890 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24723955 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24723978 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24724037 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * *
24724060 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24724125 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24724142 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24724207 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24724230 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24724289 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * *
24724312 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24724377 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24724394 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24724459 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24724482 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24724541 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * *
24724564 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24724629 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24724646 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24724711 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24724734 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24724793 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * *
24724816 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24724881 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24724898 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24724963 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24724986 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24725045 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * *
24725068 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24725133 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24725150 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24725215 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24725238 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24725297 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * *
24725320 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24725385 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24725402 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24725467 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24725490 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24725549 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * *
24725572 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24725637 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24725654 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24725719 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24725742 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24725801 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * *
24725824 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24725889 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24725906 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24725971 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24725994 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24726053 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * *
24726076 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24726141 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24726158 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24726223 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24726246 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24726305 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * *
24726328 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24726393 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24726410 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24726475 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * * * *
24726498 TCCACTACTGACCAGGGAGATAG-A---GCTAT-TT-AATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* * * *
24726557 AGAATTCTCAATCTTCAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * *
24726580 TCCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCC-AGAGAGA
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAG-GAGA
24726644 TAGGA-T-----TCTTTAATCTAT
65 TAGGATTCACAATCTTTAATCTAT
* * * * ** * *
24726662 TCTACTGCTGCCCAAGGAGATAGAATTCTCAATCTTCAGGCTATTCCACTGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24726727 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * *
24726750 TCCAATGCTGTCCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
* *
24726815 A-GA---GC--TATTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * *
24726832 TCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTACTAACCAGGGAGGT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24726897 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * ** * * *
24726920 TCTACTGTTGTTCAGGGAGATAGGAA-T--C--T-TT-AATCTATTCCACTGCTG-CCCAGGTAG
1 TCCACTGCTGACCAGGGAGATA-GAATTCACAATCTTCAACCTATTCCACTACTGACCAAGG-AG
* * **
24726977 ATAGAATTCTCAATCTTCT-GCCTAT
64 ATAGGATTCACAATCTT-TAATCTAT
* * * * ** *
24727002 TCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAACTTATTCCACCGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24727067 AGG----GC--TCTTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * ** * * *
24727084 TCCACTGCTGCCCAGGTAGATAGAATTCTCAATCTTCTGCCTATTCCACTGCTGACTAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
24727149 AGGATTCACAATCTTTAA-CTTAT
66 AGGATTCACAATCTTTAATC-TAT
* ** * * * * *
24727172 TCCACCGCTGACCAGGGAGATAG----GGC--TCTTTAATCTATTCCACTGCTGCCCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24727231 AGGATTCACAATCTTTAACCTAT
66 AGGATTCACAATCTTTAATCTAT
* * * * *
24727254 TCTACTGCTGTCCAGGGAGATAGGATT--C--T-TT-AATCTATTCCACTGCTG-CTC-AGGTAG
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGAC-CAAGG-AG
* * **
24727311 ATAGAATTCTCAATCTTCT-GCCTAT
64 ATAGGATTCACAATCTT-TAATCTAT
* * * * ** *
24727336 TCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAACTTATTCCACCGCTGACCAGGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
*
24727401 AGG----GC--TCTTTAATCTAT
66 AGGATTCACAATCTTTAATCTAT
* *
24727418 TCCACTGCTG-CCTAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTACTGACCAGGGAGA
1 TCCACTGCTGACC-AGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGA
*
24727482 TAGGATTCACAATCTTTAACCTAT
65 TAGGATTCACAATCTTTAATCTAT
* * * * *
24727506 TCCACTACTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAAGGAGAT
1 TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
** *
24727571 AGGATTCTTTAATCTTTAGTCTAT
66 AGGATTC-ACAATCTTTAATCTAT
24727595 TCCACTGCTGACCAGGGAGATA
1 TCCACTGCTGACCAGGGAGATA
24727617 AGGCTGGGGT
Statistics
Matches: 4728, Mismatches: 654, Indels: 557
0.80 0.11 0.09
Matches are distributed among these distances:
81 12 0.00
82 2932 0.62
83 101 0.02
84 82 0.02
86 79 0.02
87 82 0.02
88 1393 0.29
89 47 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (88 bp):
TCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGAT
AGGATTCACAATCTTTAATCTAT
Found at i:24727880 original size:44 final size:43
Alignment explanation
Indices: 24727832--24727970 Score: 102
Period size: 44 Copynumber: 3.2 Consensus size: 43
24727822 CGATGCAGGA
24727832 AGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAATCTATGG
1 AGGCAAGATCTGCTATTTTTA-CCTGCTCCGCTGCAATCTATGG
* * * ** * * ** *
24727876 AGGCAAG-GCTGGTGACTTCGATCTGCTTCGCTGTCGGTGT-TGG
1 AGGCAAGATCTGCT-ATTTTTACCTGCTCCGCTG-CAATCTATGG
* * *
24727919 AAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAAGG
1 -AGGCAAGATCTGCTATTTTT-ACCTGCTCCGCTGCAATCTATGG
24727964 AGGCAAG
1 AGGCAAG
24727971 GCTGGTGTCT
Statistics
Matches: 66, Mismatches: 23, Indels: 12
0.65 0.23 0.12
Matches are distributed among these distances:
43 17 0.26
44 32 0.48
45 17 0.26
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.27
Consensus pattern (43 bp):
AGGCAAGATCTGCTATTTTTACCTGCTCCGCTGCAATCTATGG
Found at i:24727994 original size:88 final size:88
Alignment explanation
Indices: 24727632--24727993 Score: 521
Period size: 88 Copynumber: 4.1 Consensus size: 88
24727622 GGGGTTATCA
* * *
24727632 ATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTATAGCCTGCTCTGTTGCAACCCA
1 ATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCA
*
24727697 GTGAGGCAAGGCTGGTGACTTCG
66 GAGAGGCAAGGCTGGTGACTTCG
* *
24727720 ATCTGCTTCGTTGTCGGTGCAAGAAGGCAAGATTTGCTATTTTTAGCCTGCTCCGCTGCAACCCA
1 ATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCA
* *
24727785 GAGAGGCAAGGCTGGTGTCTTCA
66 GAGAGGCAAGGCTGGTGACTTCG
* * * * *
24727808 ATCTGTTTCATTGTCGATGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAATCTA
1 ATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCA
24727873 TG-GAGGCAAGGCTGGTGACTTCG
66 -GAGAGGCAAGGCTGGTGACTTCG
* ** *
24727896 ATCTGCTTCGCTGTCGGTGTTGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCA
1 ATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCA
* *
24727961 -AGGAGGCAAGGCTGGTGTCTTTG
66 GA-GAGGCAAGGCTGGTGACTTCG
24727984 ATCTGCTTCG
1 ATCTGCTTCG
24727994 CAACCAGTAC
Statistics
Matches: 243, Mismatches: 28, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
88 242 1.00
89 1 0.00
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.30
Consensus pattern (88 bp):
ATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCA
GAGAGGCAAGGCTGGTGACTTCG
Found at i:24734423 original size:40 final size:40
Alignment explanation
Indices: 24734379--24734458 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
24734369 CCATGTCGAG
24734379 TTAATTTATAGCATCAACTCAATTAAATACATACATACAT
1 TTAATTTATAGCATCAACTCAATTAAATACATACATACAT
24734419 TTAATTTATAGCATCAACTCAATTAAATACATACATACAT
1 TTAATTTATAGCATCAACTCAATTAAATACATACATACAT
24734459 ACATACATAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.45, C:0.17, G:0.03, T:0.35
Consensus pattern (40 bp):
TTAATTTATAGCATCAACTCAATTAAATACATACATACAT
Found at i:24734454 original size:4 final size:4
Alignment explanation
Indices: 24734445--24734469 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
24734435 ACTCAATTAA
24734445 ATAC ATAC ATAC ATAC ATAC ATAC A
1 ATAC ATAC ATAC ATAC ATAC ATAC A
24734470 ATTGATGGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAC
Found at i:24736553 original size:21 final size:21
Alignment explanation
Indices: 24736510--24736564 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
24736500 TCGTGTTTTA
* * *
24736510 CTTCTGTTCAACTTTTACGAG
1 CTTCTGTTCAGCTCTTACAAG
*
24736531 CTTCTGTTCAGCTCTTATAAG
1 CTTCTGTTCAGCTCTTACAAG
* *
24736552 CTTATGTTTAGCT
1 CTTCTGTTCAGCT
24736565 TTCGAGCTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.18, C:0.22, G:0.15, T:0.45
Consensus pattern (21 bp):
CTTCTGTTCAGCTCTTACAAG
Found at i:24742337 original size:29 final size:29
Alignment explanation
Indices: 24742303--24742358 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
24742293 TTTGATTCTT
24742303 TTTAATAATACAAGGACTAAATTGATCCA
1 TTTAATAATACAAGGACTAAATTGATCCA
* * * *
24742332 TTTAATAGTATAGGGACTAATTTGATC
1 TTTAATAATACAAGGACTAAATTGATC
24742359 AGGTCCCTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (29 bp):
TTTAATAATACAAGGACTAAATTGATCCA
Found at i:24760218 original size:42 final size:42
Alignment explanation
Indices: 24760163--24760272 Score: 148
Period size: 42 Copynumber: 2.6 Consensus size: 42
24760153 CATGGCCAAA
* *
24760163 GACATAGGCGTGTGCCCAGGCCGTGTGAGCCACACGGGCAAG
1 GACATGGGCGTGTGCCCAAGCCGTGTGAGCCACACGGGCAAG
* * * *
24760205 GACCTGGTCGTGTGTCCAAGCCGTGTGAGCCACACGGGTAAG
1 GACATGGGCGTGTGCCCAAGCCGTGTGAGCCACACGGGCAAG
* *
24760247 GACATGGGCGTGTGTCCAAGCTGTGT
1 GACATGGGCGTGTGCCCAAGCCGTGT
24760273 ATCTCACTAT
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.19, C:0.25, G:0.37, T:0.18
Consensus pattern (42 bp):
GACATGGGCGTGTGCCCAAGCCGTGTGAGCCACACGGGCAAG
Found at i:24760313 original size:146 final size:146
Alignment explanation
Indices: 24760046--24760377 Score: 398
Period size: 146 Copynumber: 2.3 Consensus size: 146
24760036 ACTGTTGACA
* * * * *
24760046 CCACACGGCCAAGGACATGAGT-GTGTGTCCAGGCCATGTGAGCCACATGGGCAAGGACATGGGT
1 CCACACGGGCAAGGACATG-GTCGTGTGTCCAAGCCGTGTGAGCCACACGGGCAAGGACATGGGC
* * * * * ** *
24760110 GTGTGTCTAGGCCGTGTAACTCACTGTTTACGCTTTAGAACCACATGGCCAAAGACATAGGCGTG
65 GTGTGTCCAAGCCGTGTAACTCACTATTTACGATTTAGAACCACACGAACAAAGACATAGGCATG
24760175 TGCCCAGGCCGTGTGAG
130 TGCCCAGGCCGTGTGAG
* *
24760192 CCACACGGGCAAGGACCTGGTCGTGTGTCCAAGCCGTGTGAGCCACACGGGTAAGGACATGGGCG
1 CCACACGGGCAAGGACATGGTCGTGTGTCCAAGCCGTGTGAGCCACACGGGCAAGGACATGGGCG
* * * ** *
24760257 TGTGTCCAAGCTGTGTATCTCACTATTTATGATTTAGAACCACACGAACAGGGACATGGGCATGT
66 TGTGTCCAAGCCGTGTAACTCACTATTTACGATTTAGAACCACACGAACAAAGACATAGGCATGT
24760322 GCCCAGGCCGTGTGAG
131 GCCCAGGCCGTGTGAG
** * * *
24760338 CCGTACGAGAAAGGACATAGG-CCTGTGTCCAAGCCGTGTG
1 CCACACGGGCAAGGACAT-GGTCGTGTGTCCAAGCCGTGTG
24760378 GCATATAAAT
Statistics
Matches: 157, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
145 2 0.01
146 153 0.97
147 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.32, T:0.20
Consensus pattern (146 bp):
CCACACGGGCAAGGACATGGTCGTGTGTCCAAGCCGTGTGAGCCACACGGGCAAGGACATGGGCG
TGTGTCCAAGCCGTGTAACTCACTATTTACGATTTAGAACCACACGAACAAAGACATAGGCATGT
GCCCAGGCCGTGTGAG
Found at i:24761832 original size:13 final size:13
Alignment explanation
Indices: 24761814--24761864 Score: 84
Period size: 13 Copynumber: 3.9 Consensus size: 13
24761804 TTCTTCATTA
24761814 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
24761827 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
* *
24761840 CTGTGGAAAAGTG
1 CTTTTGAAAAGTG
24761853 CTTTTGAAAAGT
1 CTTTTGAAAAGT
24761865 TTGGTTTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.35
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:24770003 original size:8 final size:8
Alignment explanation
Indices: 24769992--24770019 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
24769982 TTCATGCACT
24769992 TACACATA
1 TACACATA
24770000 TACACATA
1 TACACATA
24770008 TACACATA
1 TACACATA
24770016 TACA
1 TACA
24770020 TACACTCACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (8 bp):
TACACATA
Found at i:24770966 original size:15 final size:15
Alignment explanation
Indices: 24770946--24770976 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
24770936 TGGAGATAGG
24770946 TAGTTTGGTGAATTT
1 TAGTTTGGTGAATTT
24770961 TAGTTTGGTGAATTT
1 TAGTTTGGTGAATTT
24770976 T
1 T
24770977 CAGATGCTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
TAGTTTGGTGAATTT
Found at i:24774192 original size:21 final size:21
Alignment explanation
Indices: 24774166--24774206 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
24774156 AGACGAGCAA
* *
24774166 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
24774187 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
24774207 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:24776145 original size:16 final size:16
Alignment explanation
Indices: 24776112--24776145 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
24776102 GGAGATTGTT
* *
24776112 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
24776128 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
24776144 AA
1 AA
24776146 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:24781101 original size:21 final size:21
Alignment explanation
Indices: 24781077--24781118 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
24781067 GAATGTTGTG
24781077 AGAA-AATATTGATAAAATTAA
1 AGAATAATATT-ATAAAATTAA
* *
24781098 AGAATATTATTTTAAAATTAA
1 AGAATAATATTATAAAATTAA
24781119 TGGGAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (21 bp):
AGAATAATATTATAAAATTAA
Found at i:24781731 original size:19 final size:18
Alignment explanation
Indices: 24781700--24781740 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
24781690 CTTCCAATTA
*
24781700 AATT-TCAATTCTCTCTC
1 AATTCTCAAATCTCTCTC
24781717 ACATTCTCAAATCTCTCTC
1 A-ATTCTCAAATCTCTCTC
24781736 AATTC
1 AATTC
24781741 CCTCTTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 7 0.33
19 13 0.62
ACGTcount: A:0.27, C:0.32, G:0.00, T:0.41
Consensus pattern (18 bp):
AATTCTCAAATCTCTCTC
Found at i:24786373 original size:29 final size:31
Alignment explanation
Indices: 24786326--24786384 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 31
24786316 ATATACGAAC
* *
24786326 TTTAATTTAATGTGTAATTGTATACATGAAT
1 TTTAATTTAATGTGTAATTATACACATGAAT
*
24786357 TTTAATTTGATG-G-AATTATACACATGAA
1 TTTAATTTAATGTGTAATTATACACATGAA
24786385 ACTCTAATTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 13 0.52
30 1 0.04
31 11 0.44
ACGTcount: A:0.37, C:0.05, G:0.14, T:0.44
Consensus pattern (31 bp):
TTTAATTTAATGTGTAATTATACACATGAAT
Found at i:24788373 original size:143 final size:142
Alignment explanation
Indices: 24788126--24788467 Score: 419
Period size: 143 Copynumber: 2.4 Consensus size: 142
24788116 TCCCACATTC
* *
24788126 GATTCCTCTCCTACTCACGTTTGTATTTTTTTTATTTCATGCTGCTTCAAG----TTTTTAAAAT
1 GATTCCTCT-CTACTCACATTTGTA-TTTTTTTATTTCATGTTGCTTCAAGTTTTTTTTTAAAAT
* *
24788187 TTTTAATTAATTTTTTAACATATTAGTTCTTTGGTTAGATGGTTAGATAGTTGCAACTATAT-CT
64 TTTTAATTAATTTTTTAACATATTAGTTCTTTCGTTAGATGGTTAGATAGTTGCAACTACATCCT
* * *
24788251 TTGAGTTTTGAGTTT
129 TAG-GTCTCGAGTTT
* * *
24788266 GATTCTTCTCTTACTCATATTTGTA-TTTTTTATTTCATGTTACTTCAAGTTTTTTTTTAAAA-T
1 GATTCCTCTC-TACTCACATTTGTATTTTTTTATTTCATGTTGCTTCAAGTTTTTTTTTAAAATT
* *
24788329 TTTAATTAATATTTTTTAACATATTAGTTCTTTCGTTAGATGGTTAGATAGTTGTAATTACATCC
65 TTTAATT-A-ATTTTTTAACATATTAGTTCTTTCGTTAGATGGTTAGATAGTTGCAACTACATCC
24788394 TTAGGTCTCGAGTTT
128 TTAGGTCTCGAGTTT
* * * *
24788409 GATTCCTGTACTACTTAGATTTATATTTTTTTTATTTCATGTTGCTTCAAGTTTTTTTT
1 GATTCCTCT-CTACTCACATTTGTA-TTTTTTTATTTCATGTTGCTTCAAGTTTTTTTT
24788468 AATTAATATT
Statistics
Matches: 173, Mismatches: 18, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
138 22 0.13
139 1 0.01
140 20 0.12
141 8 0.05
142 10 0.06
143 76 0.44
144 5 0.03
145 31 0.18
ACGTcount: A:0.23, C:0.12, G:0.12, T:0.54
Consensus pattern (142 bp):
GATTCCTCTCTACTCACATTTGTATTTTTTTATTTCATGTTGCTTCAAGTTTTTTTTTAAAATTT
TTAATTAATTTTTTAACATATTAGTTCTTTCGTTAGATGGTTAGATAGTTGCAACTACATCCTTA
GGTCTCGAGTTT
Found at i:24788642 original size:16 final size:16
Alignment explanation
Indices: 24788621--24788678 Score: 53
Period size: 16 Copynumber: 3.2 Consensus size: 16
24788611 TTTTTGATGA
24788621 TATTTTTAATTATTTT
1 TATTTTTAATTATTTT
24788637 TATTTTTAACTAATGTATTTTTT
1 TA-TTTT---TAAT-TA--TTTT
24788660 TATTTTTAATTATTTT
1 TATTTTTAATTATTTT
24788676 TAT
1 TAT
24788679 AACCACATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
16 9 0.26
17 4 0.11
18 2 0.06
19 4 0.11
20 4 0.11
21 2 0.06
22 4 0.11
23 6 0.17
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.71
Consensus pattern (16 bp):
TATTTTTAATTATTTT
Found at i:24789303 original size:137 final size:139
Alignment explanation
Indices: 24789053--24789306 Score: 379
Period size: 137 Copynumber: 1.8 Consensus size: 139
24789043 ACATCTATCT
* *** * * *
24789053 AACTATCTAACCATCTAGTGAAAGAACTAAAATGTTAAACAACATTAATTAAAAATTTTAAAAGC
1 AACTATCTAACCATCCAACCAAAAAACTAAAATGTTAAACAAAATTAATTAAAAATTTAAAAAGC
* *
24789118 TTGAAGCAACATGAAATAAAAATTATAAATATGAGTATGAGAAGAATCGAACACGAACTCAAAGA
66 TTGAAGCAACATGAAATAAAAATTACAAATATGAGTAAGAGAAGAATCGAACACGAACTCAAAGA
24789183 TGAAGTTGC
131 TGAAGTTGC
*
24789192 AACTATCTAACCATCCAACCAAAAAACTAACATGTTAAA-AAAATTAATT-AAAATTTAAAAAGC
1 AACTATCTAACCATCCAACCAAAAAACTAAAATGTTAAACAAAATTAATTAAAAATTTAAAAAGC
*
24789255 TTGAAGCAACATGAAATAAAAATTACAAATGTGAGTAAGAG-AGAAATCGAAC
66 TTGAAGCAACATGAAATAAAAATTACAAATATGAGTAAGAGAAG-AATCGAAC
24789307 TCGAGCCTCA
Statistics
Matches: 103, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
136 2 0.02
137 59 0.57
138 9 0.09
139 33 0.32
ACGTcount: A:0.52, C:0.13, G:0.12, T:0.23
Consensus pattern (139 bp):
AACTATCTAACCATCCAACCAAAAAACTAAAATGTTAAACAAAATTAATTAAAAATTTAAAAAGC
TTGAAGCAACATGAAATAAAAATTACAAATATGAGTAAGAGAAGAATCGAACACGAACTCAAAGA
TGAAGTTGC
Found at i:24792874 original size:94 final size:94
Alignment explanation
Indices: 24792771--24793043 Score: 232
Period size: 94 Copynumber: 2.9 Consensus size: 94
24792761 CTTCTCGATG
** *
24792771 TTAATTGTCCTGGCGA-ACTACCCCGTGTTTAGTATCCCAGA-GGACTCTATATGCTGCCATAG-
1 TTAA-TGTCCTGG-GAGACTACCCCGTACTTAGTATCCC-GATGGACTCCATATGCTGCCATAGC
*
24792833 TCGAGA-CATGGTCTTACATATTATTCCCCATGT
63 T-GA-ACCATGGTCTTACACATTATTCCCCATGT
* * * * *
24792866 TTAATGTCCAGGTAGACTACCCCGTACTTATTGTCCCGATGGACTCCATATGTTGCCATAGCTGA
1 TTAATGTCCTGGGAGACTACCCCGTACTTAGTATCCCGATGGACTCCATATGCTGCCATAGCTGA
*
24792931 ACCATGGTCTTACACATTATTCCCTATGT
66 ACCATGGTCTTACACATTATTCCCCATGT
* * * * ** * * * * ** **
24792960 TTAATGTTCT-GGAGGACAACCTCATGTTTATTGTCCCGATGGGCTCTATATGCTATCATAGCCA
1 TTAATGTCCTGGGA-GACTACCCCGTACTTAGTATCCCGATGGACTCCATATGCTGCCATAGCTG
*
24793024 AACCATAGTCTTACACATTA
65 AACCATGGTCTTACACATTA
24793044 AACCTCATTT
Statistics
Matches: 147, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
93 6 0.04
94 136 0.93
95 5 0.03
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.33
Consensus pattern (94 bp):
TTAATGTCCTGGGAGACTACCCCGTACTTAGTATCCCGATGGACTCCATATGCTGCCATAGCTGA
ACCATGGTCTTACACATTATTCCCCATGT
Found at i:24808691 original size:147 final size:147
Alignment explanation
Indices: 24808424--24808726 Score: 552
Period size: 147 Copynumber: 2.1 Consensus size: 147
24808414 ACTTCGTTGG
*
24808424 TGGGTTACCCCTCACACCTACCAAGAAGGATTCTGTATGGGTCATCGTGGATCGATTGACCAAAT
1 TGGGTTACCCCTCACACCTAACAAGAAGGATTCTGTATGGGTCATCGTGGATCGATTGACCAAAT
* *
24808489 CCACCTACTTCGTACCGGTTCGTACTAACTACTCTCTGCAGAAGCTGGCTAAATTGTATGTGTCT
66 CCACCCACTTCATACCGGTTCGTACTAACTACTCTCTGCAGAAGCTGGCTAAATTGTATGTGTCT
24808554 GAGATAGTGAGACTGCA
131 GAGATAGTGAGACTGCA
*
24808571 TGGGTTACCCCTCACACCTAACAAGAAGGATTCTGTATGGGTCATCGTGGATCGATTGATCAAAT
1 TGGGTTACCCCTCACACCTAACAAGAAGGATTCTGTATGGGTCATCGTGGATCGATTGACCAAAT
*
24808636 CCACCCACTTCATAGCGGTTCGTACTAACTACTCTCTGCAGAAGCTGGCTAAATTGTATGTGTCT
66 CCACCCACTTCATACCGGTTCGTACTAACTACTCTCTGCAGAAGCTGGCTAAATTGTATGTGTCT
24808701 GAGATAGTGAGACTGCA
131 GAGATAGTGAGACTGCA
*
24808718 TGGGGTACC
1 TGGGTTACC
24808727 GGTTTCAATA
Statistics
Matches: 150, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
147 150 1.00
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (147 bp):
TGGGTTACCCCTCACACCTAACAAGAAGGATTCTGTATGGGTCATCGTGGATCGATTGACCAAAT
CCACCCACTTCATACCGGTTCGTACTAACTACTCTCTGCAGAAGCTGGCTAAATTGTATGTGTCT
GAGATAGTGAGACTGCA
Found at i:24831065 original size:20 final size:20
Alignment explanation
Indices: 24831040--24831105 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
24831030 GTTCATCGGG
* *
24831040 TGGAAACTGGATATATGAAA
1 TGGAAAATGGTTATATGAAA
*
24831060 TGGAAAATGGTTAGATGAAA
1 TGGAAAATGGTTATATGAAA
* * * *
24831080 CGGAAATTGGTTATTTGTAA
1 TGGAAAATGGTTATATGAAA
24831100 TGGAAA
1 TGGAAA
24831106 TAACAGTCGA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.41, C:0.03, G:0.27, T:0.29
Consensus pattern (20 bp):
TGGAAAATGGTTATATGAAA
Found at i:24831925 original size:21 final size:21
Alignment explanation
Indices: 24831891--24831942 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
24831881 CCTTTTAGGA
* *
24831891 ACACACGGGTTGGTTTGTGCC
1 ACACATGGGCTGGTTTGTGCC
24831912 ACACATGGGCTGGTTTGTGCC
1 ACACATGGGCTGGTTTGTGCC
24831933 ACACATGGGC
1 ACACATGGGC
24831943 ATATTGCACG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.17, C:0.25, G:0.33, T:0.25
Consensus pattern (21 bp):
ACACATGGGCTGGTTTGTGCC
Found at i:24845345 original size:51 final size:50
Alignment explanation
Indices: 24845223--24845356 Score: 153
Period size: 50 Copynumber: 2.7 Consensus size: 50
24845213 AAAGTGATGG
* * *
24845223 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGAATGATAGA
* * * * * *
24845273 TCGCATGTGTAGTACTATGTGCATGCTACTATGCGTACC-GGATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGAAT-G-ATAGA
*
24845324 TCACGTGTGTAGTACTATGTGCAGGCTAGTATG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATG
24845357 TGAACTGGTA
Statistics
Matches: 69, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
49 3 0.04
50 35 0.51
51 31 0.45
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGAATGATAGA
Found at i:24845601 original size:16 final size:16
Alignment explanation
Indices: 24845580--24845611 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
24845570 TGATTAAAAG
*
24845580 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
24845596 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
24845612 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:24858314 original size:24 final size:24
Alignment explanation
Indices: 24858287--24858364 Score: 66
Period size: 24 Copynumber: 3.1 Consensus size: 24
24858277 CCATGGACCA
24858287 AATGTTCAATTTAATGATGGGCCG
1 AATGTTCAATTTAATGATGGGCCG
** * *
24858311 AATGTTCAACATTCTTCTCATGGGTCG
1 AATGTTC-A-ATT-TAATGATGGGCCG
* * *
24858338 AATATTCAGTTTAATGCTGGGCCG
1 AATGTTCAATTTAATGATGGGCCG
24858362 AAT
1 AAT
24858365 ATTGTAACAT
Statistics
Matches: 40, Mismatches: 11, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
24 18 0.45
25 3 0.08
26 4 0.10
27 15 0.38
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.35
Consensus pattern (24 bp):
AATGTTCAATTTAATGATGGGCCG
Found at i:24865151 original size:31 final size:31
Alignment explanation
Indices: 24865116--24865178 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
24865106 AAATAAAATA
24865116 TAAAATGTTCATTAAAATTAAAAAGAATACG
1 TAAAATGTTCATTAAAATTAAAAAGAATACG
24865147 TAAAATGTTCATTAAAATTAAAAAGAATACG
1 TAAAATGTTCATTAAAATTAAAAAGAATACG
24865178 T
1 T
24865179 GTCACCATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.54, C:0.06, G:0.10, T:0.30
Consensus pattern (31 bp):
TAAAATGTTCATTAAAATTAAAAAGAATACG
Found at i:24866806 original size:24 final size:24
Alignment explanation
Indices: 24866779--24866837 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 24
24866769 GGAGATTAAT
24866779 TAAAAATTAATAAT-AATAAAATAA
1 TAAAAATTAATAATAAATAAAAT-A
* *
24866803 TAAACACTAATAATAAATAAAATA
1 TAAAAATTAATAATAAATAAAATA
24866827 TAAAAGATTAA
1 TAAAA-ATTAA
24866838 ATTAATTATC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 17 0.59
25 12 0.41
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (24 bp):
TAAAAATTAATAATAAATAAAATA
Found at i:24869425 original size:3 final size:3
Alignment explanation
Indices: 24869408--24869469 Score: 54
Period size: 3 Copynumber: 21.0 Consensus size: 3
24869398 AGGTTAGATC
* * * * * *
24869408 AAT AAA AAT -AT AAT AAT AGT AGT AGT AAT AAT AAT AAT ATT AAC AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
24869455 AAT AAT AGT AAT AAT
1 AAT AAT AAT AAT AAT
24869470 GAAGCTCAAG
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
2 2 0.04
3 46 0.96
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:24869438 original size:15 final size:15
Alignment explanation
Indices: 24869408--24869469 Score: 72
Period size: 15 Copynumber: 4.2 Consensus size: 15
24869398 AGGTTAGATC
*
24869408 AATAAAAATA-TAAT
1 AATAATAATAGTAAT
* *
24869422 AATAGTAGTAGTAAT
1 AATAATAATAGTAAT
* *
24869437 AATAATAATATTAAC
1 AATAATAATAGTAAT
24869452 AATAATAATAGTAAT
1 AATAATAATAGTAAT
24869467 AAT
1 AAT
24869470 GAAGCTCAAG
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
14 7 0.18
15 31 0.82
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (15 bp):
AATAATAATAGTAAT
Found at i:24892004 original size:25 final size:26
Alignment explanation
Indices: 24891955--24892022 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 26
24891945 ATAAAATACA
**
24891955 TCTTTGCATTCATTTTTGAGCTAA-TAT
1 TCTTT-CATTCA-TTTTGAAATAATTAT
*
24891982 TTTTTCATTCATTTTGAAATAATTAT
1 TCTTTCATTCATTTTGAAATAATTAT
24892008 TCTTTCATTC-TTTTG
1 TCTTTCATTCATTTTG
24892023 GATTTTCTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
25 14 0.39
26 18 0.50
27 4 0.11
ACGTcount: A:0.22, C:0.13, G:0.07, T:0.57
Consensus pattern (26 bp):
TCTTTCATTCATTTTGAAATAATTAT
Found at i:24894374 original size:88 final size:88
Alignment explanation
Indices: 24894264--24894790 Score: 779
Period size: 88 Copynumber: 6.0 Consensus size: 88
24894254 GGAGTAAATC
* ** * * *
24894264 GAAGACATTAGCCTTGTTTCCCTCGGTGGTAGTGGAGCAGGTTAAAGATAGCAGATCATGCCGTT
1 GAAGACACTAGCCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAGATAGCAGATCTTGCC-TT
24894329 -CTGTACTGACAGTGAAGCAGATT
65 CCTGTACTGACAGTGAAGCAGATT
* *
24894352 GAAGACACTAGCCTTGCCTCCCTCGGTGGCAGCGGAGCAGATTAAAGATAGCAAATCTTGCCTTC
1 GAAGACACTAGCCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTC
*
24894417 CTGTACTGACAGTAAAGCAGATT
66 CTGTACTGACAGTGAAGCAGATT
* *
24894440 GAAGACACTAGCCTTGCCTCTCTCGGTGGCAGCGGAGTAGGTTAAAGATAGCAGATCTTGCCTTC
1 GAAGACACTAGCCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTC
*
24894505 CTGTACTAACAGTGAAGCAGATT
66 CTGTACTGACAGTGAAGCAGATT
24894528 GAAGACACTAGCCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTC
1 GAAGACACTAGCCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTC
24894593 CTGTACTGACAGTGAAGCAGATT
66 CTGTACTGACAGTGAAGCAGATT
* * * *
24894616 GAAGACACTAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAAATCTTGCCTTC
1 GAAGACACTAGCCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTC
* * * *
24894681 CTGCA-TCGATAGCGAAGCAGATC
66 CTGTACT-GACAGTGAAGCAGATT
* * * * * *
24894704 GAAGACACCAGCCTTGCCTCCTTGGGTTGCAGCGAAGCAGGTTAAAAATAGCAGATCTTGCCTTC
1 GAAGACACTAGCCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTC
*
24894769 CTGCACTGACAGTGAAGCAGAT
66 CTGTACTGACAGTGAAGCAGAT
24894791 CGATAACCCC
Statistics
Matches: 404, Mismatches: 32, Indels: 6
0.91 0.07 0.01
Matches are distributed among these distances:
87 3 0.01
88 400 0.99
89 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (88 bp):
GAAGACACTAGCCTTGCCTCCCTCGGTGGCAGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTC
CTGTACTGACAGTGAAGCAGATT
Found at i:24894438 original size:45 final size:45
Alignment explanation
Indices: 24894294--24894790 Score: 182
Period size: 44 Copynumber: 11.3 Consensus size: 45
24894284 CCTCGGTGGT
* * * *
24894294 AGTGGAGCAGGTTAAAGATAGCAGATCATGCCGTT-CTGTACTGAC
1 AGTGAAGCAGATTAAAGATAGCAAATCTTGCC-TTCCTGTACTGAC
* * * ** * * *
24894339 AGTGAAGCAGATTGAAGACA-CTAGCCTTGCCTCCCTCG--GTGGC
1 AGTGAAGCAGATTAAAGATAGCAAATCTTGCCTTCCT-GTACTGAC
* *
24894382 AGCGGAGCAGATTAAAGATAGCAAATCTTGCCTTCCTGTACTGAC
1 AGTGAAGCAGATTAAAGATAGCAAATCTTGCCTTCCTGTACTGAC
* * * * ** * *
24894427 AGTAAAGCAGATTGAAGACA-CTAGCCTTGCC-TCTCTCG--GTGGC
1 AGTGAAGCAGATTAAAGATAGCAAATCTTGCCTTC-CT-GTACTGAC
* * * * * *
24894470 AGCGGAGTAGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTAAC
1 AGTGAAGCAGATTAAAGATAGCAAATCTTGCCTTCCTGTACTGAC
* * * ** * * *
24894515 AGTGAAGCAGATTGAAGACA-CTAGCCTTGCCTCCCTCG--GTGGC
1 AGTGAAGCAGATTAAAGATAGCAAATCTTGCCTTCCT-GTACTGAC
* * * *
24894558 AGCGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTGAC
1 AGTGAAGCAGATTAAAGATAGCAAATCTTGCCTTCCTGTACTGAC
* * * ** * ***
24894603 AGTGAAGCAGATTGAAGACA-CTAGCCTTGCCTCCCTGGGTTG-C
1 AGTGAAGCAGATTAAAGATAGCAAATCTTGCCTTCCTGTACTGAC
* * * * * *
24894646 AGCGGAGCAGGTTAAAAATAGCAAATCTTGCCTTCCTGCA-TCGAT
1 AGTGAAGCAGATTAAAGATAGCAAATCTTGCCTTCCTGTACT-GAC
* ** * * ** ***
24894691 AGCGAAGCAGATCGAAGACA-CCAGCCTTGCC-TCCTTGGGTTG-C
1 AGTGAAGCAGATTAAAGATAGCAAATCTTGCCTTCC-TGTACTGAC
* * * * *
24894734 AGCGAAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACTGAC
1 AGTGAAGCAGATTAAAGATAGCAAATCTTGCCTTCCTGTACTGAC
24894779 AGTGAAGCAGAT
1 AGTGAAGCAGAT
24894791 CGATAACCCC
Statistics
Matches: 305, Mismatches: 124, Indels: 46
0.64 0.26 0.10
Matches are distributed among these distances:
43 92 0.30
44 111 0.36
45 102 0.33
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (45 bp):
AGTGAAGCAGATTAAAGATAGCAAATCTTGCCTTCCTGTACTGAC
Found at i:24894791 original size:88 final size:88
Alignment explanation
Indices: 24894133--24894793 Score: 767
Period size: 88 Copynumber: 7.5 Consensus size: 88
24894123 CAAATCAGTG
* * * * * * * *
24894133 AAGATAACAGATCTTACCTTCCTACACCGATAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGCACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
* * * *
24894198 CTGGGTTGCAGCAGAGTAGGTTGA
66 CTCGGTGGCAGCGGAGCAGGTT-A
* ** * * * * * * **
24894222 AA-ATTGCAGATCTTATCTCCCTAAGCA--G-TAGTGGAGTAAATCGAAGACATTAGCCTTGTTT
1 AAGATAGCAGATCTTGCCTTCCT--GCACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCT
* *
24894283 CCCTCGGTGGTAGTGGAGCAGGTTA
64 CCCTCGGTGGCAGCGGAGCAGGTTA
* * *
24894308 AAGATAGCAGATCATGCCGTT-CTGTACTGACAGTGAAGCAGATTGAAGACACTAGCCTTGCCTC
1 AAGATAGCAGATCTTGCC-TTCCTGCACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTC
*
24894372 CCTCGGTGGCAGCGGAGCAGATTA
65 CCTCGGTGGCAGCGGAGCAGGTTA
* * * * *
24894396 AAGATAGCAAATCTTGCCTTCCTGTACTGACAGTAAAGCAGATTGAAGACACTAGCCTTGCCTCT
1 AAGATAGCAGATCTTGCCTTCCTGCACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
*
24894461 CTCGGTGGCAGCGGAGTAGGTTA
66 CTCGGTGGCAGCGGAGCAGGTTA
* * *
24894484 AAGATAGCAGATCTTGCCTTCCTGTACTAACAGTGAAGCAGATTGAAGACACTAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGCACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
24894549 CTCGGTGGCAGCGGAGCAGGTTA
66 CTCGGTGGCAGCGGAGCAGGTTA
* *
24894572 AAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATTGAAGACACTAGCCTTGCCTCC
1 AAGATAGCAGATCTTGCCTTCCTGCACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
* *
24894637 CTGGGTTGCAGCGGAGCAGGTTA
66 CTCGGTGGCAGCGGAGCAGGTTA
* * * * *
24894660 AAAATAGCAAATCTTGCCTTCCTGCA-TCGATAGCGAAGCAGATCGAAGACACCAGCCTTGCCTC
1 AAGATAGCAGATCTTGCCTTCCTGCACT-GACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTC
* * * *
24894724 CTTGGGTTGCAGCGAAGCAGGTTA
65 CCTCGGTGGCAGCGGAGCAGGTTA
*
24894748 AAAATAGCAGATCTTGCCTTCCTGCACTGACAGTGAAGCAGATCGA
1 AAGATAGCAGATCTTGCCTTCCTGCACTGACAGTGAAGCAGATCGA
24894794 TAACCCCAAC
Statistics
Matches: 499, Mismatches: 63, Indels: 21
0.86 0.11 0.04
Matches are distributed among these distances:
85 2 0.00
86 3 0.01
87 59 0.12
88 430 0.86
89 3 0.01
90 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.23
Consensus pattern (88 bp):
AAGATAGCAGATCTTGCCTTCCTGCACTGACAGTGAAGCAGATCGAAGACACTAGCCTTGCCTCC
CTCGGTGGCAGCGGAGCAGGTTA
Found at i:24894870 original size:44 final size:44
Alignment explanation
Indices: 24894804--24894980 Score: 284
Period size: 44 Copynumber: 4.0 Consensus size: 44
24894794 TAACCCCAAC
*
24894804 CCTATCTCCCTGGAT-AGTAGTGGAATAGGCTGAAGATTGTGAAT
1 CCTATCTCCCTGG-TCAGCAGTGGAATAGGCTGAAGATTGTGAAT
*
24894848 CCTATCTCCCCGGTCAGCAGTGGAATAGGCTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGCTGAAGATTGTGAAT
*
24894892 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGCTGAAGATTGTGAAT
* * *
24894936 CCTATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGCGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGCTGAAGATTGTGAAT
24894980 C
1 C
24894981 TTACTTTCCT
Statistics
Matches: 126, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
43 1 0.01
44 125 0.99
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGCTGAAGATTGTGAAT
Found at i:24895843 original size:31 final size:32
Alignment explanation
Indices: 24895808--24895882 Score: 98
Period size: 35 Copynumber: 2.3 Consensus size: 32
24895798 CATGCCTAAC
24895808 TTCCCATT-TAAGTACAAAACATGTGTATGCT
1 TTCCCATTCTAAGTACAAAACATGTGTATGCT
*
24895839 TTCCCATTCATCTTAGTACAAAACATGTGTATGCT
1 TTCCCA-T--TCTAAGTACAAAACATGTGTATGCT
*
24895874 TTGCCATTC
1 TTCCCATTC
24895883 ATCTTATCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
31 6 0.16
32 3 0.08
34 2 0.05
35 27 0.71
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (32 bp):
TTCCCATTCTAAGTACAAAACATGTGTATGCT
Found at i:24895860 original size:35 final size:35
Alignment explanation
Indices: 24895818--24895888 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
24895808 TTCCCATTTA
24895818 AGTACAAAACATGTGTATGCTTTCCCATTCATCTT
1 AGTACAAAACATGTGTATGCTTTCCCATTCATCTT
*
24895853 AGTACAAAACATGTGTATGCTTTGCCATTCATCTT
1 AGTACAAAACATGTGTATGCTTTCCCATTCATCTT
24895888 A
1 A
24895889 TCTTCTATTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.37
Consensus pattern (35 bp):
AGTACAAAACATGTGTATGCTTTCCCATTCATCTT
Found at i:24898085 original size:45 final size:44
Alignment explanation
Indices: 24897900--24898087 Score: 133
Period size: 45 Copynumber: 4.2 Consensus size: 44
24897890 ATACTCGGAT
* * *
24897900 AATCACATATATCGAACAATGCCAACGTCCCAGACGTGGTCTTACATG
1 AATCACATATATCG----ATGCCATCGTTCCAGACGTGGTCTTACACG
* * * *
24897948 CTATCTC--ATATCGATGCCA-CTGTCCCGGACAG-GGTCTTACACG
1 -AATCACATATATCGATGCCATC-GTTCCAGAC-GTGGTCTTACACG
*
24897991 AATCA-A-ATA-CGATGCCAAT-G-TCCTAGACATGGTCTTACACG
1 AATCACATATATCGATGCC-ATCGTTCC-AGACGTGGTCTTACACG
24898032 TAATCACATATATCGATGCCATCGTTCCAGACGTGGTCTTACACG
1 -AATCACATATATCGATGCCATCGTTCCAGACGTGGTCTTACACG
*
24898077 AGAACACATAT
1 A-ATCACATAT
24898088 CGAAAATCCT
Statistics
Matches: 114, Mismatches: 11, Indels: 32
0.73 0.07 0.20
Matches are distributed among these distances:
40 2 0.02
41 22 0.19
42 13 0.11
43 25 0.22
44 7 0.06
45 32 0.28
46 3 0.03
47 6 0.05
49 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (44 bp):
AATCACATATATCGATGCCATCGTTCCAGACGTGGTCTTACACG
Found at i:24903187 original size:9 final size:9
Alignment explanation
Indices: 24903169--24903203 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
24903159 TCCACTCTTC
24903169 TAAA-TTTT
1 TAAATTTTT
24903177 TAAATTTTT
1 TAAATTTTT
24903186 TAAATTTTT
1 TAAATTTTT
24903195 TAAATTTTT
1 TAAATTTTT
24903204 GTTGTAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.15
9 22 0.85
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (9 bp):
TAAATTTTT
Found at i:24906696 original size:120 final size:120
Alignment explanation
Indices: 24906499--24906881 Score: 748
Period size: 120 Copynumber: 3.2 Consensus size: 120
24906489 TTTTCAAGTT
*
24906499 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
24906564 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
24906619 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
24906684 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
24906739 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
24906804 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
24906859 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
24906882 TAAATATGAT
Statistics
Matches: 261, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 261 1.00
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
Found at i:24906738 original size:18 final size:17
Alignment explanation
Indices: 24906710--24906744 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24906700 ATTATTAAGA
*
24906710 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24906727 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24906745 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24906858 original size:18 final size:17
Alignment explanation
Indices: 24906830--24906864 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24906820 ATTATTAAGA
*
24906830 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24906847 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24906865 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24907094 original size:44 final size:45
Alignment explanation
Indices: 24907029--24907119 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
24907019 ACCTCTATTC
* * *
24907029 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
24907073 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
24907118 CA
1 CA
24907120 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:24907121 original size:16 final size:16
Alignment explanation
Indices: 24907100--24907168 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
24907090 GATTAGCTAT
24907100 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
24907116 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
24907133 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
24907149 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
24907165 TACA
1 TACA
24907169 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:24907142 original size:33 final size:32
Alignment explanation
Indices: 24907100--24907168 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
24907090 GATTAGCTAT
24907100 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
24907133 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
24907165 TACA
1 TACA
24907169 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:24910500 original size:16 final size:16
Alignment explanation
Indices: 24910478--24910532 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
24910468 GTTTGGTTCA
*
24910478 CTGTAATTGAATAGAG
1 CTGTAATAGAATAGAG
* *
24910494 TTGTAATGGAATAGAG
1 CTGTAATAGAATAGAG
* *
24910510 CTATAATAGAATAGAA
1 CTGTAATAGAATAGAG
24910526 CTGTAAT
1 CTGTAAT
24910533 CGGTAATTCA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.42, C:0.05, G:0.22, T:0.31
Consensus pattern (16 bp):
CTGTAATAGAATAGAG
Found at i:24910746 original size:27 final size:25
Alignment explanation
Indices: 24910702--24910755 Score: 63
Period size: 27 Copynumber: 2.1 Consensus size: 25
24910692 GTTATTAAAC
* * *
24910702 TTTAATAAGATTACAAATTAAATATAT
1 TTTAATAAAAATA-AAAATAAATA-AT
24910729 TTTAATAAAAATAAAAATAAATAAT
1 TTTAATAAAAATAAAAATAAATAAT
24910754 TT
1 TT
24910756 AATCATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 4 0.17
26 9 0.38
27 11 0.46
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (25 bp):
TTTAATAAAAATAAAAATAAATAAT
Found at i:24910866 original size:61 final size:58
Alignment explanation
Indices: 24910718--24910871 Score: 152
Period size: 61 Copynumber: 2.6 Consensus size: 58
24910708 AAGATTACAA
* * * * *
24910718 ATTAAATATATTTTAATAAAAATAAAAATAAATAATTTAATCATTTTTTAACATAATTATT
1 ATTAAATATAATTT-A-AAAAAT-ATAATATATAATTTAATCATTTCTTAACATAATAATT
* *
24910779 ATTAAATATAATTTAATAAA-ATAATATATAATTTAATAACA-TTCTTAATATAATAATT
1 ATTAAATATAATTTAAAAAATATAATATATAATTTAAT--CATTTCTTAACATAATAATT
24910837 ATTCAAATATGAA-TTAAAAAATCATAATATATAAT
1 ATT-AAATAT-AATTTAAAAAAT-ATAATATATAAT
24910872 ATTATAAAAA
Statistics
Matches: 79, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
57 15 0.19
58 17 0.22
59 19 0.24
60 3 0.04
61 25 0.32
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.42
Consensus pattern (58 bp):
ATTAAATATAATTTAAAAAATATAATATATAATTTAATCATTTCTTAACATAATAATT
Found at i:24910880 original size:23 final size:21
Alignment explanation
Indices: 24910849--24910891 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
24910839 TCAAATATGA
24910849 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
24910872 ATTATAAAAATAATATATAA
1 ATTAAAAAAATAATATATAA
24910892 CCTACTTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:24915653 original size:17 final size:17
Alignment explanation
Indices: 24915627--24915661 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
24915617 GCAGGTAATT
* *
24915627 CTTTATCTATTGCATTA
1 CTTTACCTATTACATTA
24915644 CTTTACCTATTACATTA
1 CTTTACCTATTACATTA
24915661 C
1 C
24915662 CTCTGTTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.23, G:0.03, T:0.49
Consensus pattern (17 bp):
CTTTACCTATTACATTA
Found at i:24924212 original size:52 final size:52
Alignment explanation
Indices: 24924131--24924236 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 52
24924121 TTTATAAAAA
* *
24924131 CAAACTTGTAAGTGTTATTTCCATTTCAATTTTCTTCTTATATATTCGAAGG
1 CAAACTTGTAAGTGTTATTTCCATATCAATTTTCTTCCTATATATTCGAAGG
*
24924183 CAAACTTTTAAGTGTTATTTCCATATCAATTTTCTTCCTATATATTCGAAGG
1 CAAACTTGTAAGTGTTATTTCCATATCAATTTTCTTCCTATATATTCGAAGG
24924235 CA
1 CA
24924237 TAATGAATGC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.28, C:0.17, G:0.10, T:0.44
Consensus pattern (52 bp):
CAAACTTGTAAGTGTTATTTCCATATCAATTTTCTTCCTATATATTCGAAGG
Found at i:24933709 original size:50 final size:50
Alignment explanation
Indices: 24933639--24933760 Score: 147
Period size: 50 Copynumber: 2.4 Consensus size: 50
24933629 ATATTAAATA
* * * *
24933639 AAATCAAATTAATACTAAAATATATATTTGAATAACTATAAAATAGAATC
1 AAATCAAACTAATACCAAAATATATATTCGAACAACTATAAAATAGAATC
* *
24933689 AAATCAAACTAATACCAAAATATATGTTCGAGCAACTATAAAATAGAATC
1 AAATCAAACTAATACCAAAATATATATTCGAACAACTATAAAATAGAATC
* * *
24933739 TAATTAATACTAGTA-CAAAATA
1 AAATCAA-ACTAATACCAAAATA
24933761 AACTAATAAC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 56 0.90
51 6 0.10
ACGTcount: A:0.54, C:0.11, G:0.06, T:0.29
Consensus pattern (50 bp):
AAATCAAACTAATACCAAAATATATATTCGAACAACTATAAAATAGAATC
Found at i:24933958 original size:16 final size:16
Alignment explanation
Indices: 24933937--24934005 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
24933927 TTTGGTTCGC
24933937 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
24933953 TGTATTGCATTAGAGG
1 TGTATTGGATTAGAGG
24933969 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
24933986 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
24934002 TGTA
1 TGTA
24934006 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 35 0.70
17 15 0.30
ACGTcount: A:0.25, C:0.01, G:0.36, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:24933983 original size:33 final size:32
Alignment explanation
Indices: 24933937--24934005 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
24933927 TTTGGTTCGC
24933937 TGTATTGGATTAGAGGTGTATTGCATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGCATTAGAGG
*
24933969 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGCATTAGAGG
24934002 TGTA
1 TGTA
24934006 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.36, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGCATTAGAGG
Found at i:24934069 original size:44 final size:45
Alignment explanation
Indices: 24933986--24934076 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
24933976 GGATTAGAGG
* * *
24933986 TGTATTGGATTAGAGGTGTAATAGCTAATCTACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCTACTGTTTGGTTGAA
**
24934031 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCTACTGTTTGGTTGAA
24934075 TG
1 TG
24934077 GAATAGAGGT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 20 0.49
45 21 0.51
ACGTcount: A:0.27, C:0.05, G:0.29, T:0.38
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCTACTGTTTGGTTGAA
Found at i:24934091 original size:39 final size:43
Alignment explanation
Indices: 24933986--24934099 Score: 128
Period size: 45 Copynumber: 2.7 Consensus size: 43
24933976 GGATTAGAGG
* *
24933986 TGTATTGGATTAGAGGTGTAATAGCTAATCTACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCTAATCTACTGTTTGGTT--A
* **
24934031 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCTAATCTACTGTTTGGTTA
24934071 TG-AATGGAATAGAGGTGTAATAGCATAAT
1 TGTAATGGAATAGAGGTGTAATAGC-TAAT
24934100 GGAAAAAACT
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
39 20 0.33
40 2 0.03
41 4 0.07
43 1 0.02
44 13 0.21
45 21 0.34
ACGTcount: A:0.31, C:0.05, G:0.28, T:0.36
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCTAATCTACTGTTTGGTTA
Found at i:24934262 original size:18 final size:17
Alignment explanation
Indices: 24934241--24934275 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24934231 TTATTATTAA
*
24934241 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
24934259 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
24934276 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:24934382 original size:18 final size:17
Alignment explanation
Indices: 24934361--24934395 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24934351 TTATTATTAA
*
24934361 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
24934379 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
24934396 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:24934437 original size:120 final size:120
Alignment explanation
Indices: 24934224--24934736 Score: 999
Period size: 120 Copynumber: 4.3 Consensus size: 120
24934214 ATCATATTTA
24934224 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
24934289 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
24934344 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
24934409 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
24934464 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
24934529 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
24934584 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
24934649 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
24934704 AACATAATTATTATTAAATATAATTTAATTAAA
1 AACATAATTATTATTAAATATATTTTAATTAAA
24934737 NNNNNNNNNN
Statistics
Matches: 390, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 390 1.00
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:24934502 original size:18 final size:17
Alignment explanation
Indices: 24934481--24934515 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24934471 TTATTATTAA
*
24934481 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
24934499 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
24934516 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:24934622 original size:18 final size:17
Alignment explanation
Indices: 24934601--24934635 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24934591 TTATTATTAA
*
24934601 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
24934619 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
24934636 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:24945464 original size:64 final size:64
Alignment explanation
Indices: 24945390--24945510 Score: 233
Period size: 64 Copynumber: 1.9 Consensus size: 64
24945380 ATAATAACAA
*
24945390 TGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCCAATTTTAATATAT
1 TGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCAAATTTTAATATAT
24945454 TGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCAAATTTT
1 TGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCAAATTTT
24945511 TATTTTATTT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.31, C:0.07, G:0.10, T:0.52
Consensus pattern (64 bp):
TGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCAAATTTTAATATAT
Found at i:24945630 original size:24 final size:26
Alignment explanation
Indices: 24945578--24945627 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
24945568 TATATGTAAT
24945578 ATTATTAAAATAATATTTTTAATTTTA
1 ATTATTAAAATAATATTTTTAA-TTTA
*
24945605 ATTATTTAAA-AATATTTTTAATT
1 ATTATTAAAATAATATTTTTAATT
24945628 AATGAGTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 11 0.50
27 9 0.41
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
ATTATTAAAATAATATTTTTAATTTA
Found at i:24951421 original size:26 final size:26
Alignment explanation
Indices: 24951375--24951448 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
24951365 ATGTTTTCTT
** * *
24951375 AAAATTTTACTAAAGGAAAAATGGTC
1 AAAATTTTACTAGGGGTAAAATCGTC
*
24951401 AAAATTTTACTAGGGGTAAAATCTTC
1 AAAATTTTACTAGGGGTAAAATCGTC
*
24951427 AAAATTTTGCTAGGGGTAAAAT
1 AAAATTTTACTAGGGGTAAAAT
24951449 AGGGATGAGA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.43, C:0.08, G:0.18, T:0.31
Consensus pattern (26 bp):
AAAATTTTACTAGGGGTAAAATCGTC
Found at i:24955157 original size:20 final size:20
Alignment explanation
Indices: 24955132--24955253 Score: 93
Period size: 20 Copynumber: 6.0 Consensus size: 20
24955122 GGCACCAAGA
24955132 AAATCTTTAAAAATATTGGT
1 AAATCTTTAAAAATATTGGT
* *
24955152 AAATCTTTAGAAGTATTGGT
1 AAATCTTTAAAAATATTGGT
** *
24955172 AAAT-TCTTATAATTTTTTGGT
1 AAATCT-TTA-AAAATATTGGT
* * *
24955193 AAAGCTTTATAAATTTTGGT
1 AAATCTTTAAAAATATTGGT
** * *
24955213 AAATCACTAAAAATACTAGT
1 AAATCTTTAAAAATATTGGT
* *
24955233 AAATCCTTAGAAATATTGGT
1 AAATCTTTAAAAATATTGGT
24955253 A
1 A
24955254 TGCAAAAATG
Statistics
Matches: 77, Mismatches: 22, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
19 1 0.01
20 62 0.81
21 13 0.17
22 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (20 bp):
AAATCTTTAAAAATATTGGT
Found at i:24956019 original size:30 final size:31
Alignment explanation
Indices: 24955980--24956039 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
24955970 GGAGGTGGGA
*
24955980 TGGGAAGGGAATAAAAGTTTTAGGG-GAAAAG
1 TGGGAAGGGAATAAAAATTTT-GGGAGAAAAG
*
24956011 TGGG-AGGGAGTAAAAATTTTGGGAGAAAA
1 TGGGAAGGGAATAAAAATTTTGGGAGAAAA
24956040 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 3 0.12
30 19 0.73
31 4 0.15
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTGGGAGAAAAG
Found at i:24956268 original size:9 final size:9
Alignment explanation
Indices: 24956251--24956287 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
24956241 TATAGTTTGA
*
24956251 TATTAGAAT
1 TATTCGAAT
24956260 TATTCGAAT
1 TATTCGAAT
*
24956269 TATTCGAGT
1 TATTCGAAT
24956278 TATTCGAAT
1 TATTCGAAT
24956287 T
1 T
24956288 CAAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.08, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:24957959 original size:86 final size:88
Alignment explanation
Indices: 24957817--24957979 Score: 249
Period size: 86 Copynumber: 1.9 Consensus size: 88
24957807 GCCCTGTCTG
* *
24957817 GTGTGATATTTGTATGTGTTTCATGGAAGCATTGAGAGAACAGGAAGGTTACTTGT-C-CAAAGA
1 GTGTGATATTTGGATGTGTTTCATGGAAGCACTGAGAGAACAGGAAGGTTACTTGTCCTCAAAGA
24957880 GAAGAGAAAAGGGTTACTGTCCA
66 GAAGAGAAAAGGGTTACTGTCCA
* * * * *
24957903 GTGTGATATTTGGATGTGTTTCTTGGAGGCCCTGAGTGAACAGGAAGGTTAGTTGTCCTCAAAGA
1 GTGTGATATTTGGATGTGTTTCATGGAAGCACTGAGAGAACAGGAAGGTTACTTGTCCTCAAAGA
24957968 GAAGAGAAAAGG
66 GAAGAGAAAAGG
24957980 AAGGTTATAG
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
86 49 0.72
87 1 0.01
88 18 0.26
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (88 bp):
GTGTGATATTTGGATGTGTTTCATGGAAGCACTGAGAGAACAGGAAGGTTACTTGTCCTCAAAGA
GAAGAGAAAAGGGTTACTGTCCA
Found at i:24960964 original size:2 final size:2
Alignment explanation
Indices: 24960957--24960990 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
24960947 ATAACCCACC
24960957 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
24960991 TAACCATAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:24964602 original size:22 final size:22
Alignment explanation
Indices: 24964567--24964647 Score: 76
Period size: 24 Copynumber: 3.7 Consensus size: 22
24964557 GCTTGGAGGA
* * *
24964567 AGAGAAAATGAAGGAACCTACT
1 AGAGAGAATCAAGGAACATACT
*
24964589 AGAGAGAATCAAGGAAAATCACT
1 AGAGAGAATCAAGGAACAT-ACT
* *
24964612 GGGAGAGAATCAAGGAACATATT
1 -AGAGAGAATCAAGGAACATACT
24964635 AG-GA-AATCAAGGA
1 AGAGAGAATCAAGGA
24964648 GAAGTTGGGT
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
20 9 0.18
21 2 0.04
22 16 0.33
23 5 0.10
24 17 0.35
ACGTcount: A:0.49, C:0.11, G:0.26, T:0.14
Consensus pattern (22 bp):
AGAGAGAATCAAGGAACATACT
Found at i:24969676 original size:23 final size:23
Alignment explanation
Indices: 24969633--24969678 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
24969623 TAATAGTACA
*
24969633 TTACTTCTGTTATTAGTACTTTG
1 TTACTTCTGTTATTAGCACTTTG
*
24969656 TTACTTTTGTTATTTA-CACTTTG
1 TTACTTCTGTTA-TTAGCACTTTG
24969679 GTGTGATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.17, C:0.13, G:0.11, T:0.59
Consensus pattern (23 bp):
TTACTTCTGTTATTAGCACTTTG
Found at i:24972391 original size:42 final size:42
Alignment explanation
Indices: 24972344--24972424 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
24972334 AATTTAAAGC
* * *
24972344 TATATTGACTAAGGCTTCGATCTTGATACAATTAGAACTGGG
1 TATATTGACTAAAGCTTCGATCTTGACAAAATTAGAACTGGG
24972386 TATATTGACTAAAGCTTCGATCTTGACAAAATTAGAACT
1 TATATTGACTAAAGCTTCGATCTTGACAAAATTAGAACT
24972425 AGGAAAGAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (42 bp):
TATATTGACTAAAGCTTCGATCTTGACAAAATTAGAACTGGG
Found at i:24979190 original size:27 final size:26
Alignment explanation
Indices: 24979153--24979228 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 26
24979143 ATATATTTTT
*
24979153 TCAAAATTTTACC-AGAGGTAAATTCA
1 TCAAAATTTTACCGAG-GGTAAAATCA
24979179 TCAAAAATTTTACCGAGGGTAAAATCA
1 TC-AAAATTTTACCGAGGGTAAAATCA
*
24979206 TCAAAATTTTACTG-GGGTAAAAT
1 TCAAAATTTTACCGAGGGTAAAAT
24979229 AAGGATGTGA
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
25 9 0.20
26 13 0.28
27 22 0.48
28 2 0.04
ACGTcount: A:0.42, C:0.13, G:0.14, T:0.30
Consensus pattern (26 bp):
TCAAAATTTTACCGAGGGTAAAATCA
Found at i:24982655 original size:17 final size:18
Alignment explanation
Indices: 24982624--24982658 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
24982614 GTTGGGCTGA
24982624 AATGGGCTGTGTGGGCCC
1 AATGGGCTGTGTGGGCCC
24982642 AATGGGCT-TGTGGGCCC
1 AATGGGCTGTGTGGGCCC
24982659 TATACGGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.11, C:0.23, G:0.43, T:0.23
Consensus pattern (18 bp):
AATGGGCTGTGTGGGCCC
Found at i:24982952 original size:28 final size:28
Alignment explanation
Indices: 24982913--24983045 Score: 121
Period size: 27 Copynumber: 4.9 Consensus size: 28
24982903 ATAACCTGAA
***
24982913 AGAT-AAAATGACTATTTTACCCCTAAT
1 AGATGAAAATGACTAAAATACCCCTAAT
24982940 AGATGAAAATGACTAAAATACCCCT-AT
1 AGATGAAAATGACTAAAATACCCCTAAT
* * *
24982967 AG-GGTAAAATGACTAAAATACCCTTAAA
1 AGATG-AAAATGACTAAAATACCCCTAAT
* ****
24982995 AGGT-AAAATGACTGTTTTACCCCTAAT
1 AGATGAAAATGACTAAAATACCCCTAAT
*
24983022 AGATGAAAATGACTGAAATACCCC
1 AGATGAAAATGACTAAAATACCCC
24983046 CATAGGGTAA
Statistics
Matches: 84, Mismatches: 17, Indels: 9
0.76 0.15 0.08
Matches are distributed among these distances:
26 1 0.01
27 47 0.56
28 36 0.43
ACGTcount: A:0.44, C:0.18, G:0.13, T:0.26
Consensus pattern (28 bp):
AGATGAAAATGACTAAAATACCCCTAAT
Found at i:24983024 original size:82 final size:82
Alignment explanation
Indices: 24982888--24983137 Score: 299
Period size: 82 Copynumber: 3.1 Consensus size: 82
24982878 CCCCAAAATA
* * *
24982888 GGTAAAATAACCAAAATAACC-TGAAAGATAAAATGACTATTTTACCCCTAATAGATGAAAATGA
1 GGTAAAATAACCAAAATACCCTTAAAAGGTAAAATGACTATTTTACCCCTAATAGATGAAAATGA
*
24982952 CTAAAATACCCCTATAG
66 CTAAAATACCCCCATAG
* * *
24982969 GGTAAAATGACTAAAATACCCTTAAAAGGTAAAATGACTGTTTTACCCCTAATAGATGAAAATGA
1 GGTAAAATAACCAAAATACCCTTAAAAGGTAAAATGACTATTTTACCCCTAATAGATGAAAATGA
*
24983034 CTGAAATACCCCCATAG
66 CTAAAATACCCCCATAG
* * * * * *** * *
24983051 GGTAAAATAACCAAAATACTCTCATAGGGTAAAATGACCAAAATA-CCCTAATAG-GGTAAAATA
1 GGTAAAATAACCAAAATACCCTTAAAAGGTAAAATGACTATTTTACCCCTAATAGATG-AAAATG
*
24983114 ACCAAAATACCCCCATAG
65 ACTAAAATACCCCCATAG
24983132 GGTAAA
1 GGTAAA
24983138 TACCCTCATA
Statistics
Matches: 144, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
80 1 0.01
81 54 0.38
82 89 0.62
ACGTcount: A:0.46, C:0.18, G:0.13, T:0.22
Consensus pattern (82 bp):
GGTAAAATAACCAAAATACCCTTAAAAGGTAAAATGACTATTTTACCCCTAATAGATGAAAATGA
CTAAAATACCCCCATAG
Found at i:24983058 original size:27 final size:27
Alignment explanation
Indices: 24982945--24983137 Score: 172
Period size: 27 Copynumber: 7.1 Consensus size: 27
24982935 CTAATAGATG
*
24982945 AAAATGACTAAAATACCCCTATAGGGT
1 AAAATGACTAAAATACCCCCATAGGGT
** * *
24982972 AAAATGACTAAAATACCCTTAAAAGGT
1 AAAATGACTAAAATACCCCCATAGGGT
**** * *
24982999 AAAATGACTGTTTTACCCCTAATA-GAT
1 AAAATGACTAAAATACCCC-CATAGGGT
*
24983026 GAAAATGACTGAAATACCCCCATAGGGT
1 -AAAATGACTAAAATACCCCCATAGGGT
* * * *
24983054 AAAATAACCAAAATACTCTCATAGGGT
1 AAAATGACTAAAATACCCCCATAGGGT
* **
24983081 AAAATGACCAAAATACCCTAATAGGGT
1 AAAATGACTAAAATACCCCCATAGGGT
* *
24983108 AAAATAACCAAAATACCCCCATAGGGT
1 AAAATGACTAAAATACCCCCATAGGGT
24983135 AAA
1 AAA
24983138 TACCCTCATA
Statistics
Matches: 136, Mismatches: 27, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 116 0.85
28 20 0.15
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.21
Consensus pattern (27 bp):
AAAATGACTAAAATACCCCCATAGGGT
Found at i:24983098 original size:54 final size:54
Alignment explanation
Indices: 24982945--24983264 Score: 223
Period size: 54 Copynumber: 6.1 Consensus size: 54
24982935 CTAATAGATG
* * * * * * *
24982945 AAAATGACTAAAATACCCCTATAGGGTAAAATGACTAAAATACCCTTAAAAGGT
1 AAAATAACCAAAATACCCCCATAGGGTAAAATGACCAAAATACCCTCATAGGGT
* ***** * * ** *
24982999 AAAATGACTGTTTTACCCCTAATA-GATGAAAATGACTGAAATACCCCCATAGGGT
1 AAAATAACCAAAATACCCC-CATAGGGT-AAAATGACCAAAATACCCTCATAGGGT
* * *
24983054 AAAATAACCAAAATACTCTCATAGGGTAAAATGACCAAAATACCCTAATAGGGT
1 AAAATAACCAAAATACCCCCATAGGGTAAAATGACCAAAATACCCTCATAGGGT
24983108 AAAATAACCAAAATACCCCCATAGGG-----T-----AAATACCCTCATAGGGT
1 AAAATAACCAAAATACCCCCATAGGGTAAAATGACCAAAATACCCTCATAGGGT
* * * * * * * *
24983152 AAAATGATCGAAATACCCTCATAAGGTAAAATAATCAAAATACCC-CTATAGGTT
1 AAAATAACCAAAATACCCCCATAGGGTAAAATGACCAAAATACCCTC-ATAGGGT
* ** * *
24983206 AAAATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCTTATAGGGT
1 AAAATAACCAAAATACCCCCATAGGGTAAAATGACCAAAATACCCTCATAGGGT
24983260 AAAAT
1 AAAAT
24983265 GACTGTTATA
Statistics
Matches: 208, Mismatches: 43, Indels: 30
0.74 0.15 0.11
Matches are distributed among these distances:
44 37 0.18
49 2 0.01
53 1 0.00
54 130 0.62
55 38 0.18
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.22
Consensus pattern (54 bp):
AAAATAACCAAAATACCCCCATAGGGTAAAATGACCAAAATACCCTCATAGGGT
Found at i:24983140 original size:17 final size:17
Alignment explanation
Indices: 24983118--24983154 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
24983108 AAAATAACCA
24983118 AAATACCCCCATAGGGT
1 AAATACCCCCATAGGGT
*
24983135 AAATACCCTCATAGGGT
1 AAATACCCCCATAGGGT
24983152 AAA
1 AAA
24983155 ATGATCGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.41, C:0.24, G:0.16, T:0.19
Consensus pattern (17 bp):
AAATACCCCCATAGGGT
Found at i:24983140 original size:44 final size:44
Alignment explanation
Indices: 24983091--24983181 Score: 128
Period size: 44 Copynumber: 2.1 Consensus size: 44
24983081 AAAATGACCA
*
24983091 AAATACCCTAATAGGGTAAAATAACCAAAATACCCCCATAGGGT
1 AAATACCCTAATAGGGTAAAATAACCAAAATACCCCCATAAGGT
* * * * *
24983135 AAATACCCTCATAGGGTAAAATGATCGAAATACCCTCATAAGGT
1 AAATACCCTAATAGGGTAAAATAACCAAAATACCCCCATAAGGT
24983179 AAA
1 AAA
24983182 ATAATCAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.45, C:0.21, G:0.14, T:0.20
Consensus pattern (44 bp):
AAATACCCTAATAGGGTAAAATAACCAAAATACCCCCATAAGGT
Found at i:24983180 original size:71 final size:71
Alignment explanation
Indices: 24983064--24983208 Score: 218
Period size: 71 Copynumber: 2.0 Consensus size: 71
24983054 AAAATAACCA
* *
24983064 AAATACTCTCATAGGGTAAAATGACCAAAATACCCTAATAGGGTAAAATAACCAAAATACCCCCA
1 AAATACCCTCATAGGGTAAAATGACCAAAATACCCTAATAAGGTAAAATAACCAAAATACCCCCA
24983129 TAGGGT
66 TAGGGT
* * * * *
24983135 AAATACCCTCATAGGGTAAAATGATCGAAATACCCTCATAAGGTAAAATAATCAAAATACCCCTA
1 AAATACCCTCATAGGGTAAAATGACCAAAATACCCTAATAAGGTAAAATAACCAAAATACCCCCA
*
24983200 TAGGTT
66 TAGGGT
24983206 AAA
1 AAA
24983209 ATGACTGAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 66 1.00
ACGTcount: A:0.46, C:0.20, G:0.13, T:0.21
Consensus pattern (71 bp):
AAATACCCTCATAGGGTAAAATGACCAAAATACCCTAATAAGGTAAAATAACCAAAATACCCCCA
TAGGGT
Found at i:24983193 original size:125 final size:125
Alignment explanation
Indices: 24983027--24983262 Score: 323
Period size: 125 Copynumber: 1.9 Consensus size: 125
24983017 CTAATAGATG
* *
24983027 AAAATGACTGAAATACCCCCATAGGGTAAAATAACCAAAATA-CTCTCATAGGGTAAAATGACCA
1 AAAATGACTGAAATACCCCCATAAGGTAAAATAACCAAAATACCCCT-ATAGGGTAAAATGACCA
*
24983091 AAATACCCTAATAGGGTAAAATAACCAAAATACCCCCATAGGGTAAATACCCTCATAGGGT
65 AAATACCCCAATAGGGTAAAATAACCAAAATACCCCCATAGGGTAAATACCCTCATAGGGT
* * * **
24983152 AAAATGA-TCGAAATACCCTCATAAGGTAAAATAATCAAAATACCCCTATAGGTTAAAATGACTG
1 AAAATGACT-GAAATACCCCCATAAGGTAAAATAACCAAAATACCCCTATAGGGTAAAATGACCA
* * * **
24983216 AAATACCCCCATAGGGTAAAATGACCGAAATACCCTTATAGGGTAAA
65 AAATACCCCAATAGGGTAAAATAACCAAAATACCCCCATAGGGTAAA
24983263 ATGACTGTTA
Statistics
Matches: 96, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
124 1 0.01
125 92 0.96
126 3 0.03
ACGTcount: A:0.45, C:0.20, G:0.14, T:0.20
Consensus pattern (125 bp):
AAAATGACTGAAATACCCCCATAAGGTAAAATAACCAAAATACCCCTATAGGGTAAAATGACCAA
AATACCCCAATAGGGTAAAATAACCAAAATACCCCCATAGGGTAAATACCCTCATAGGGT
Found at i:24983209 original size:98 final size:98
Alignment explanation
Indices: 24983037--24983235 Score: 274
Period size: 98 Copynumber: 2.0 Consensus size: 98
24983027 AAAATGACTG
* * *
24983037 AAATACCCCCATAGGGTAAAATAACCAAAATACTCTCATAGGGTAAAATGACCAAAATACCCTAA
1 AAATACCCCCATAGGGTAAAATAACCAAAATACCCTCATAAGGTAAAATAACCAAAATACCCTAA
24983102 TAGGGTAAAATAACCAAAATACCCCCATAGGGT
66 TAGGGTAAAATAACCAAAATACCCCCATAGGGT
* * * * *
24983135 AAATACCCTCATAGGGTAAAATGATCGAAATACCCTCATAAGGTAAAATAATCAAAATACCCCT-
1 AAATACCCCCATAGGGTAAAATAACCAAAATACCCTCATAAGGTAAAATAACCAAAATA-CCCTA
* * **
24983199 ATAGGTTAAAATGACTGAAATACCCCCATAGGGT
65 ATAGGGTAAAATAACCAAAATACCCCCATAGGGT
24983233 AAA
1 AAA
24983236 ATGACCGAAA
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
98 84 0.95
99 4 0.05
ACGTcount: A:0.45, C:0.21, G:0.14, T:0.20
Consensus pattern (98 bp):
AAATACCCCCATAGGGTAAAATAACCAAAATACCCTCATAAGGTAAAATAACCAAAATACCCTAA
TAGGGTAAAATAACCAAAATACCCCCATAGGGT
Found at i:24983265 original size:54 final size:54
Alignment explanation
Indices: 24983135--24983294 Score: 182
Period size: 54 Copynumber: 3.0 Consensus size: 54
24983125 CCCATAGGGT
* * * * *
24983135 AAATACCCTCATAGGGTAAAATGA-TCGAAATACCCTCATAAGGTAAAATAATCA
1 AAATACCCTTATAGGGTAAAATGACT-GAAATACCCCCATAGGGTAAAATGACCA
* * *
24983189 AAATACCCCTATAGGTTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCG
1 AAATACCCTTATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCA
**
24983243 AAATACCCTTATAGGGTAAAATGACTGTTATA-CCCC-TAGGAGATAAAATGAC
1 AAATACCCTTATAGGGTAAAATGACTGAAATACCCCCATAGG-G-TAAAATGAC
24983295 TGTTATACCC
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
52 4 0.04
53 5 0.05
54 81 0.89
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (54 bp):
AAATACCCTTATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCA
Found at i:24983267 original size:27 final size:27
Alignment explanation
Indices: 24983135--24983267 Score: 169
Period size: 27 Copynumber: 4.9 Consensus size: 27
24983125 CCCATAGGGT
*
24983135 AAATACCCTCATAGGGTAAAATGATCG
1 AAATACCCTCATAGGGTAAAATGACCG
* * * *
24983162 AAATACCCTCATAAGGTAAAATAATCA
1 AAATACCCTCATAGGGTAAAATGACCG
* *
24983189 AAATACCC-CTATAGGTTAAAATGACTG
1 AAATACCCTC-ATAGGGTAAAATGACCG
*
24983216 AAATACCCCCATAGGGTAAAATGACCG
1 AAATACCCTCATAGGGTAAAATGACCG
*
24983243 AAATACCCTTATAGGGTAAAATGAC
1 AAATACCCTCATAGGGTAAAATGAC
24983268 TGTTATACCC
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 89 0.98
28 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.15, T:0.22
Consensus pattern (27 bp):
AAATACCCTCATAGGGTAAAATGACCG
Found at i:24983275 original size:27 final size:27
Alignment explanation
Indices: 24983135--24983307 Score: 151
Period size: 27 Copynumber: 6.4 Consensus size: 27
24983125 CCCATAGGGT
24983135 AAATA-CCCTCATAGGGTAAAATGA-TCG
1 AAATACCCCT-ATAGGGTAAAATGACT-G
* * *
24983162 AAATA-CCCTCATAAGGTAAAAT-AATCA
1 AAATACCCCT-ATAGGGTAAAATGACT-G
*
24983189 AAATACCCCTATAGGTTAAAATGACTG
1 AAATACCCCTATAGGGTAAAATGACTG
* *
24983216 AAATACCCCCATAGGGTAAAATGACCG
1 AAATACCCCTATAGGGTAAAATGACTG
*
24983243 AAATACCCTTATAGGGTAAAATGACTG
1 AAATACCCCTATAGGGTAAAATGACTG
**
24983270 TTATACCCC--TAGGAGATAAAATGACTG
1 AAATACCCCTATAGG-G-TAAAATGACTG
**
24983297 TTATACCCCTA
1 AAATACCCCTA
24983308 GGAGATAAAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
25 4 0.03
26 2 0.02
27 112 0.90
28 6 0.05
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAAAATGACTG
Found at i:24983308 original size:27 final size:27
Alignment explanation
Indices: 24983259--24983327 Score: 129
Period size: 27 Copynumber: 2.6 Consensus size: 27
24983249 CCTTATAGGG
24983259 TAAAATGACTGTTATACCCCTAGGAGA
1 TAAAATGACTGTTATACCCCTAGGAGA
24983286 TAAAATGACTGTTATACCCCTAGGAGA
1 TAAAATGACTGTTATACCCCTAGGAGA
*
24983313 TAAAATAACTGTTAT
1 TAAAATGACTGTTAT
24983328 GGCCTTATGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (27 bp):
TAAAATGACTGTTATACCCCTAGGAGA
Found at i:24983567 original size:26 final size:27
Alignment explanation
Indices: 24983534--24983611 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 27
24983524 ACATATACTG
*
24983534 TTACTGGCAGTTTTGCTGCGATATTGA
1 TTACTGGCAGCTTTGCTGCGATATTGA
* * * *
24983561 -TACTGGCAGCTCTACTACGATACT-A
1 TTACTGGCAGCTTTGCTGCGATATTGA
24983586 TTACTGGCAGCTTTGCTGCGATATTG
1 TTACTGGCAGCTTTGCTGCGATATTG
24983612 GTGTGTTGGC
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
25 1 0.03
26 39 0.98
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.36
Consensus pattern (27 bp):
TTACTGGCAGCTTTGCTGCGATATTGA
Found at i:24983855 original size:28 final size:28
Alignment explanation
Indices: 24983710--24983860 Score: 191
Period size: 28 Copynumber: 5.4 Consensus size: 28
24983700 TATTGCACTG
* *
24983710 CACTATTACTATATTGGGCTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCA
* * *
24983738 TACTG-AATCTGTATTGGGTTAAGGCCCA
1 CACTGTTA-CTGTATTGGGCTAAGGCCCA
*
24983766 TACTGATT-CTGTATTGGGCTAAGGCCCA
1 CACTG-TTACTGTATTGGGCTAAGGCCCA
*
24983794 CATTGTTACTGTATTGGGCTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCA
*
24983822 CACTGTTATTGTATTGGGCTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCA
24983850 CACTG-TACTGT
1 CACTGTTACTGT
24983861 CACTAAATAG
Statistics
Matches: 107, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
27 8 0.07
28 99 0.93
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (28 bp):
CACTGTTACTGTATTGGGCTAAGGCCCA
Found at i:24989460 original size:21 final size:21
Alignment explanation
Indices: 24989436--24989490 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
24989426 GTGCATGTAT
*
24989436 CATTCCCCCTTTCCTCAAAAA
1 CATTCACCCTTTCCTCAAAAA
* *
24989457 CATTCATCTTTTCCTCAAAAA
1 CATTCACCCTTTCCTCAAAAA
*
24989478 CATTCATCCTTTC
1 CATTCACCCTTTC
24989491 GGTGAATAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.27, C:0.36, G:0.00, T:0.36
Consensus pattern (21 bp):
CATTCACCCTTTCCTCAAAAA
Done.