Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 86 of 205
Found at i:25435116 original size:18 final size:17
Alignment explanation
Indices: 25435088--25435122 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
25435078 ATTATTAAGA
*
25435088 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
25435105 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
25435123 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:25435261 original size:18 final size:17
Alignment explanation
Indices: 25435233--25435267 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
25435223 ATTATTAAGA
*
25435233 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
25435250 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
25435268 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:25435519 original size:16 final size:16
Alignment explanation
Indices: 25435498--25435534 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
25435488 TTAATTTGCT
25435498 ATTACGCATCTATTCC
1 ATTACGCATCTATTCC
*
25435514 ATTACGCCTCTATTCC
1 ATTACGCATCTATTCC
25435530 ATTAC
1 ATTAC
25435535 ATCTCTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.24, C:0.32, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTACGCATCTATTCC
Found at i:25435540 original size:16 final size:16
Alignment explanation
Indices: 25435506--25435543 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
25435496 CTATTACGCA
*
25435506 TCTATTCCATTACGCC
1 TCTATTCCATTACACC
*
25435522 TCTATTCCATTACATC
1 TCTATTCCATTACACC
25435538 TCTATT
1 TCTATT
25435544 TCAATACAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.21, C:0.32, G:0.03, T:0.45
Consensus pattern (16 bp):
TCTATTCCATTACACC
Found at i:25437198 original size:17 final size:17
Alignment explanation
Indices: 25437136--25437215 Score: 88
Period size: 18 Copynumber: 4.5 Consensus size: 17
25437126 ACACGAGATT
*
25437136 TTTTTGAAACACGAAAA
1 TTTTTGAAAGACGAAAA
* * **
25437153 TTTATGAAATACGGTCAA
1 TTTTTGAAAGAC-GAAAA
25437171 TTTTTGAAAAGACGAAAA
1 TTTTTG-AAAGACGAAAA
25437189 TTTTTGAAAGACGAAAA
1 TTTTTGAAAGACGAAAA
25437206 CTTTTTGAAA
1 -TTTTTGAAA
25437216 CACTGGAATT
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
17 21 0.40
18 26 0.50
19 5 0.10
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.33
Consensus pattern (17 bp):
TTTTTGAAAGACGAAAA
Found at i:25437227 original size:17 final size:17
Alignment explanation
Indices: 25437169--25437285 Score: 80
Period size: 17 Copynumber: 6.8 Consensus size: 17
25437159 AAATACGGTC
* *
25437169 AATTTTTGAAAAGACGAA
1 AATTTTTGAAAACACG-G
* *
25437187 AATTTTTG-AAAGACGAA
1 AATTTTTGAAAACACG-G
25437204 AACTTTTTG-AAACACTGG
1 AA-TTTTTGAAAACAC-GG
*
25437222 AA-TTTTGAAAACACGA
1 AATTTTTGAAAACACGG
* *
25437238 AGATTTTTG-AAGCATGAG
1 A-ATTTTTGAAAACACG-G
25437256 AATTTTTGAAAACACGG
1 AATTTTTGAAAACACGG
*
25437273 AATTTTTTAAAAC
1 AATTTTTGAAAAC
25437286 GCGAAAAGTC
Statistics
Matches: 83, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
16 7 0.08
17 43 0.52
18 32 0.39
19 1 0.01
ACGTcount: A:0.43, C:0.09, G:0.16, T:0.32
Consensus pattern (17 bp):
AATTTTTGAAAACACGG
Found at i:25437238 original size:35 final size:35
Alignment explanation
Indices: 25437169--25437285 Score: 105
Period size: 35 Copynumber: 3.3 Consensus size: 35
25437159 AAATACGGTC
* * * *
25437169 AATTTTTGAAAAGACGAAAATTTTTG-AAAGACGAA
1 AATTTTTG-AAACATGAGAATTTTTGAAAACACGAA
25437204 AACTTTTTGAAACACTG-GAA-TTTTGAAAACACGAA
1 AA-TTTTTGAAACA-TGAGAATTTTTGAAAACACGAA
* * *
25437239 GATTTTTGAAGCATGAGAATTTTTGAAAACACGGA
1 AATTTTTGAAACATGAGAATTTTTGAAAACACGAA
* *
25437274 ATTTTTTAAAAC
1 AATTTTTGAAAC
25437286 GCGAAAAGTC
Statistics
Matches: 66, Mismatches: 11, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
33 2 0.03
34 18 0.27
35 39 0.59
36 7 0.11
ACGTcount: A:0.43, C:0.09, G:0.16, T:0.32
Consensus pattern (35 bp):
AATTTTTGAAACATGAGAATTTTTGAAAACACGAA
Found at i:25437285 original size:52 final size:53
Alignment explanation
Indices: 25437136--25437292 Score: 155
Period size: 52 Copynumber: 3.0 Consensus size: 53
25437126 ACACGAGATT
* * * *
25437136 TTTTTGAAACACGAAAA-TTTATGAAATAC-GGTCAATTTTTGAAAAGACGAAAA
1 TTTTTGAAAGACGAAAACTTTTTGAAACACTGG--AATTTTTGAAAACACGAAAA
*
25437189 TTTTTGAAAGACGAAAACTTTTTGAAACACTGGAA-TTTTGAAAACACGAAGA
1 TTTTTGAAAGACGAAAACTTTTTGAAACACTGGAATTTTTGAAAACACGAAAA
* * * *
25437241 TTTTTG-AAGCATGAGAA-TTTTTGAAAACAC-GGAATTTTTTAAAACGCGAAAA
1 TTTTTGAAAG-ACGAAAACTTTTTG-AAACACTGGAATTTTTGAAAACACGAAAA
25437293 GTCAAAATTT
Statistics
Matches: 89, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
51 13 0.15
52 46 0.52
53 18 0.20
54 10 0.11
55 2 0.02
ACGTcount: A:0.43, C:0.10, G:0.17, T:0.31
Consensus pattern (53 bp):
TTTTTGAAAGACGAAAACTTTTTGAAACACTGGAATTTTTGAAAACACGAAAA
Found at i:25437322 original size:45 final size:49
Alignment explanation
Indices: 25437258--25437352 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 49
25437248 AGCATGAGAA
*
25437258 TTTTTGAAAACACGGAA-TTTTTT-AAAACGCGAAAAG-TCAAAATTTT
1 TTTTTGAAAACACGAAATTTTTTTGAAAACGCGAAAAGTTCAAAATTTT
* *
25437304 TTTTTG-AAACACGAAATTTTTTTGAAAATGCGAAAAGTTGAAAATTTT
1 TTTTTGAAAACACGAAATTTTTTTGAAAACGCGAAAAGTTCAAAATTTT
25437352 T
1 T
25437353 GAAATACGAG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
45 9 0.21
46 12 0.28
47 12 0.28
48 10 0.23
ACGTcount: A:0.40, C:0.08, G:0.14, T:0.38
Consensus pattern (49 bp):
TTTTTGAAAACACGAAATTTTTTTGAAAACGCGAAAAGTTCAAAATTTT
Found at i:25437354 original size:44 final size:43
Alignment explanation
Indices: 25437256--25437390 Score: 123
Period size: 44 Copynumber: 3.0 Consensus size: 43
25437246 GAAGCATGAG
* * *
25437256 AATTTTTGAAAACACGGAATTTTTT-AAAACGCGAAAAG-TCAA
1 AATTTTTG-AAACACGAAATTTTTTGAAAATGCGAAAAGTTGAA
25437298 AATTTTTTTTTGAAACACGAAATTTTTTTGAAAATGCGAAAAGTTGAA
1 AA----TTTTTGAAACACGAAA-TTTTTTGAAAATGCGAAAAGTTGAA
* * *
25437346 AATTTTTGAAATACGAGTAA-TTTTTGAAAATACGAAAATTTGAA
1 AATTTTTGAAACACGA--AATTTTTTGAAAATGCGAAAAGTTGAA
25437390 A
1 A
25437391 CACGAAATTT
Statistics
Matches: 78, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
42 2 0.03
44 36 0.46
45 9 0.12
46 14 0.18
47 12 0.15
48 5 0.06
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.35
Consensus pattern (43 bp):
AATTTTTGAAACACGAAATTTTTTGAAAATGCGAAAAGTTGAA
Found at i:25437385 original size:18 final size:17
Alignment explanation
Indices: 25437343--25437386 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
25437333 GCGAAAAGTT
25437343 GAAAATTTTTGAAATAC
1 GAAAATTTTTGAAATAC
*
25437360 GAGTAATTTTTGAAAATAC
1 GA-AAATTTTTG-AAATAC
25437379 GAAAATTT
1 GAAAATTT
25437387 GAAACACGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 13 0.57
19 8 0.35
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.36
Consensus pattern (17 bp):
GAAAATTTTTGAAATAC
Found at i:25437921 original size:22 final size:22
Alignment explanation
Indices: 25437892--25437942 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
25437882 GACTTGGGCC
*
25437892 CCTTTTTCTTCCTTCTTTTTTT
1 CCTTTTTCTTCCTTCTTTTTGT
* **
25437914 TCTTTTTCTTTTTTCTTTTTGT
1 CCTTTTTCTTCCTTCTTTTTGT
25437936 CCTTTTT
1 CCTTTTT
25437943 TTGGCAGATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.00, C:0.22, G:0.02, T:0.76
Consensus pattern (22 bp):
CCTTTTTCTTCCTTCTTTTTGT
Found at i:25437922 original size:15 final size:16
Alignment explanation
Indices: 25437894--25437927 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
25437884 CTTGGGCCCC
25437894 TTTTTCTTCCTTCTTT
1 TTTTTCTTCCTTCTTT
*
25437910 TTTTTCTT-TTTCTTT
1 TTTTTCTTCCTTCTTT
25437925 TTT
1 TTT
25437928 CTTTTTGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTTCTTCCTTCTTT
Found at i:25437925 original size:13 final size:13
Alignment explanation
Indices: 25437909--25437933 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25437899 CTTCCTTCTT
25437909 TTTTTTCTTTTTC
1 TTTTTTCTTTTTC
25437922 TTTTTTCTTTTT
1 TTTTTTCTTTTT
25437934 GTCCTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTCTTTTTC
Found at i:25438088 original size:22 final size:21
Alignment explanation
Indices: 25438051--25438092 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
25438041 TGGCCTGCTG
25438051 GCTGAGCCTGGCCTGCTGGAT
1 GCTGAGCCTGGCCTGCTGGAT
*
25438072 GCTGAGCGCTGGGCTGCTGGA
1 GCTGAGC-CTGGCCTGCTGGA
25438093 AGGGTGGGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.10, C:0.26, G:0.43, T:0.21
Consensus pattern (21 bp):
GCTGAGCCTGGCCTGCTGGAT
Found at i:25438294 original size:13 final size:14
Alignment explanation
Indices: 25438278--25438351 Score: 63
Period size: 12 Copynumber: 5.8 Consensus size: 14
25438268 TATTATTTTT
25438278 TTCTTTC-CCTTTC
1 TTCTTTCTCCTTTC
*
25438291 TTCTTTCTCTTTTC
1 TTCTTTCTCCTTTC
25438305 TT-TTTCTCC-TTC
1 TTCTTTCTCCTTTC
*
25438317 TT-TTTCT-TTTTC
1 TTCTTTCTCCTTTC
*
25438329 TTCTTT-TTCTTT-
1 TTCTTTCTCCTTTC
*
25438341 TTCTTTTTCCT
1 TTCTTTCTCCT
25438352 CTTTTTTTCT
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
12 22 0.43
13 22 0.43
14 7 0.14
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (14 bp):
TTCTTTCTCCTTTC
Found at i:25438333 original size:15 final size:15
Alignment explanation
Indices: 25438287--25438363 Score: 72
Period size: 15 Copynumber: 5.1 Consensus size: 15
25438277 TTTCTTTCCC
25438287 TTTCTTCTTTC-TC-T
1 TTTCTT-TTTCTTCTT
25438301 TTTCTTTTTCTCCTTCTT
1 TTTC-TTTT-T-CTTCTT
25438319 TTTCTTTTTCTTCTT
1 TTTCTTTTTCTTCTT
25438334 TTTCTTTTTCTT-TT
1 TTTCTTTTTCTTCTT
*
25438348 TCCTCTTTTT-TTCTT
1 T-TTCTTTTTCTTCTT
25438363 T
1 T
25438364 CTTCCCCGTT
Statistics
Matches: 55, Mismatches: 1, Indels: 13
0.80 0.01 0.19
Matches are distributed among these distances:
14 11 0.20
15 31 0.56
16 2 0.04
17 6 0.11
18 5 0.09
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTCTTTTTCTTCTT
Found at i:25438338 original size:21 final size:21
Alignment explanation
Indices: 25438287--25438366 Score: 89
Period size: 21 Copynumber: 4.0 Consensus size: 21
25438277 TTTCTTTCCC
*
25438287 TTTCTTCTTTCTC-TTTTCTT
1 TTTCTTCTTTTTCTTTTTCTT
*
25438307 TTTC-TC--CTTCTTTTTCTT
1 TTTCTTCTTTTTCTTTTTCTT
25438325 TTTCTTCTTTTTCTTTTTCTT
1 TTTCTTCTTTTTCTTTTTCTT
*
25438346 TTTCCTCTTTTT-TTCTTTCTT
1 TTTCTTCTTTTTCTT-TTTCTT
25438367 CCCCGTTCAG
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
17 2 0.04
18 11 0.22
19 4 0.08
20 6 0.12
21 28 0.55
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTCTTCTTTTTCTTTTTCTT
Found at i:25438347 original size:6 final size:6
Alignment explanation
Indices: 25438287--25438363 Score: 72
Period size: 6 Copynumber: 13.2 Consensus size: 6
25438277 TTTCTTTCCC
* *
25438287 TTTCTT CTTTCTCT TTTCTT TTTCTC CTTCTT TTTCTT TTTC-- -TTCTT
1 TTTCTT -TTTCT-T TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
* *
25438334 TTTCTT TTTCTT TTTCCT CTT-TT TTTCTT T
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT T
25438364 CTTCCCCGTT
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
3 3 0.05
5 3 0.05
6 40 0.70
7 10 0.18
8 1 0.02
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTCTT
Found at i:25444088 original size:30 final size:30
Alignment explanation
Indices: 25444009--25444122 Score: 92
Period size: 30 Copynumber: 3.9 Consensus size: 30
25443999 GACGCAAAAT
* * *
25444009 GTTT-GGGGTGAAAATGTAATTTTTGGAAA
1 GTTTAGGGGTCAAAGTGTAATTTTTAGAAA
* * *
25444038 ATATA-GGG-CCAAGATGTAATTTTTAGAAA
1 GTTTAGGGGTCAAAG-TGTAATTTTTAGAAA
* *
25444067 GTTTAGGGGTCAAAGTGTAATTTTGATAAA
1 GTTTAGGGGTCAAAGTGTAATTTTTAGAAA
* *
25444097 TTTTAGGGGTTGAAA-TGTAATTTTTA
1 GTTTAGGGG-TCAAAGTGTAATTTTTA
25444123 TTTTTTTTGC
Statistics
Matches: 66, Mismatches: 14, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
28 2 0.03
29 22 0.33
30 34 0.52
31 8 0.12
ACGTcount: A:0.33, C:0.03, G:0.25, T:0.39
Consensus pattern (30 bp):
GTTTAGGGGTCAAAGTGTAATTTTTAGAAA
Found at i:25448358 original size:31 final size:30
Alignment explanation
Indices: 25448289--25448364 Score: 95
Period size: 29 Copynumber: 2.5 Consensus size: 30
25448279 TTTAAGGGAA
25448289 AAAAAATCAATTAAG-TATTTTGACTTAATT
1 AAAAAATCAATTAAGTTATTTTGA-TTAATT
*
25448319 -TAAAATCAATTAAGTTATTGTTG-TTAATCT
1 AAAAAATCAATTAAGTTATT-TTGATTAAT-T
25448349 AAAAAATCAATTAAGT
1 AAAAAATCAATTAAGT
25448365 CCATTTATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
29 18 0.45
30 5 0.12
31 17 0.43
ACGTcount: A:0.46, C:0.07, G:0.08, T:0.39
Consensus pattern (30 bp):
AAAAAATCAATTAAGTTATTTTGATTAATT
Found at i:25455404 original size:188 final size:188
Alignment explanation
Indices: 25455087--25455462 Score: 743
Period size: 188 Copynumber: 2.0 Consensus size: 188
25455077 TAGAGACAAA
*
25455087 GTTGACAGTGAGGTTGGTTCGGATAGCAAGGCAGATAGGTAAGCTTCTGTTTTGGTAGCATCAAA
1 GTTGACAATGAGGTTGGTTCGGATAGCAAGGCAGATAGGTAAGCTTCTGTTTTGGTAGCATCAAA
25455152 GAAGCGAGACAAAATGTGTCGCTATTGTAAAAAGTTAGGTCATGCCAAAGCAGATTGTTATAAAC
66 GAAGCGAGACAAAATGTGTCGCTATTGTAAAAAGTTAGGTCATGCCAAAGCAGATTGTTATAAAC
25455217 TATGAAATAAAAGAGTTGCTGAGAGTAACGAGGAAGATGTAGCTGGTGCTAATTTGGT
131 TATGAAATAAAAGAGTTGCTGAGAGTAACGAGGAAGATGTAGCTGGTGCTAATTTGGT
25455275 GTTGACAATGAGGTTGGTTCGGATAGCAAGGCAGATAGGTAAGCTTCTGTTTTGGTAGCATCAAA
1 GTTGACAATGAGGTTGGTTCGGATAGCAAGGCAGATAGGTAAGCTTCTGTTTTGGTAGCATCAAA
25455340 GAAGCGAGACAAAATGTGTCGCTATTGTAAAAAGTTAGGTCATGCCAAAGCAGATTGTTATAAAC
66 GAAGCGAGACAAAATGTGTCGCTATTGTAAAAAGTTAGGTCATGCCAAAGCAGATTGTTATAAAC
25455405 TATGAAATAAAAGAGTTGCTGAGAGTAACGAGGAAGATGTAGCTGGTGCTAATTTGGT
131 TATGAAATAAAAGAGTTGCTGAGAGTAACGAGGAAGATGTAGCTGGTGCTAATTTGGT
25455463 CGATGAAAGC
Statistics
Matches: 187, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
188 187 1.00
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.27
Consensus pattern (188 bp):
GTTGACAATGAGGTTGGTTCGGATAGCAAGGCAGATAGGTAAGCTTCTGTTTTGGTAGCATCAAA
GAAGCGAGACAAAATGTGTCGCTATTGTAAAAAGTTAGGTCATGCCAAAGCAGATTGTTATAAAC
TATGAAATAAAAGAGTTGCTGAGAGTAACGAGGAAGATGTAGCTGGTGCTAATTTGGT
Found at i:25458729 original size:16 final size:18
Alignment explanation
Indices: 25458690--25458741 Score: 56
Period size: 17 Copynumber: 3.0 Consensus size: 18
25458680 CTAAGGCTTC
* *
25458690 AAATAATATAAAAGGATAT
1 AAATAAAAT-AAACGATAT
25458709 AAAT-AAATAAACGATAT
1 AAATAAAATAAACGATAT
25458726 -AATAAAATAAAC-ATAT
1 AAATAAAATAAACGATAT
25458742 TTAAAATATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
16 7 0.23
17 16 0.53
18 3 0.10
19 4 0.13
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.25
Consensus pattern (18 bp):
AAATAAAATAAACGATAT
Found at i:25461415 original size:29 final size:29
Alignment explanation
Indices: 25461373--25461433 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
25461363 CATCAATTAT
25461373 GATCTCATCTAATAATTTAATGTCATGTG
1 GATCTCATCTAATAATTTAATGTCATGTG
25461402 GATCTCATCTAATAATTTAATGTCATGTG
1 GATCTCATCTAATAATTTAATGTCATGTG
25461431 GAT
1 GAT
25461434 AATTTTTACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (29 bp):
GATCTCATCTAATAATTTAATGTCATGTG
Found at i:25461460 original size:18 final size:18
Alignment explanation
Indices: 25461437--25461491 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
25461427 TGTGGATAAT
25461437 TTTTACAGATCATTAAAA
1 TTTTACAGATCATTAAAA
* *
25461455 TTTTAC----CAAT-AAT
1 TTTTACAGATCATTAAAA
25461468 TTTTACAGATCATTAAAA
1 TTTTACAGATCATTAAAA
25461486 TTTTAC
1 TTTTAC
25461492 CAACTCATCC
Statistics
Matches: 28, Mismatches: 4, Indels: 10
0.67 0.10 0.24
Matches are distributed among these distances:
13 8 0.29
14 3 0.11
17 3 0.11
18 14 0.50
ACGTcount: A:0.40, C:0.13, G:0.04, T:0.44
Consensus pattern (18 bp):
TTTTACAGATCATTAAAA
Found at i:25461470 original size:31 final size:31
Alignment explanation
Indices: 25461432--25461494 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
25461422 TGTCATGTGG
25461432 ATAATTTTTACAGATCATTAAAATTTTACCA
1 ATAATTTTTACAGATCATTAAAATTTTACCA
25461463 ATAATTTTTACAGATCATTAAAATTTTACCA
1 ATAATTTTTACAGATCATTAAAATTTTACCA
25461494 A
1 A
25461495 CTCATCCATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.43, C:0.13, G:0.03, T:0.41
Consensus pattern (31 bp):
ATAATTTTTACAGATCATTAAAATTTTACCA
Found at i:25462412 original size:16 final size:15
Alignment explanation
Indices: 25462393--25462422 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
25462383 ACAACCATTG
25462393 TTTAGAACAACTTGTA
1 TTTAGAACAA-TTGTA
25462409 TTTAGAACAATTGT
1 TTTAGAACAATTGT
25462423 GTTTTTCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.40
Consensus pattern (15 bp):
TTTAGAACAATTGTA
Found at i:25462539 original size:16 final size:18
Alignment explanation
Indices: 25462497--25462541 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 18
25462487 AACAACTATT
*
25462497 ATTTAGAACAACCTCTAC
1 ATTTGGAACAACCTCTAC
25462515 A-TTGAGAACAA-CTC-AC
1 ATTTG-GAACAACCTCTAC
25462531 ATTTGGAACAA
1 ATTTGGAACAA
25462542 GTCAAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
16 9 0.38
17 8 0.33
18 7 0.29
ACGTcount: A:0.42, C:0.22, G:0.11, T:0.24
Consensus pattern (18 bp):
ATTTGGAACAACCTCTAC
Found at i:25463148 original size:24 final size:24
Alignment explanation
Indices: 25463121--25463183 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
25463111 TATTTCCTCT
*
25463121 CTCTATTTGGGTGTTTCAGAAACA
1 CTCTATTTGGGTGTTTCAAAAACA
25463145 CTCTATTTGGGTGTTTCAAAAACA
1 CTCTATTTGGGTGTTTCAAAAACA
25463169 CTCTATTTGGGTGTT
1 CTCTATTTGGGTGTT
25463184 CCCTCTTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.22, C:0.16, G:0.21, T:0.41
Consensus pattern (24 bp):
CTCTATTTGGGTGTTTCAAAAACA
Found at i:25465162 original size:22 final size:23
Alignment explanation
Indices: 25465099--25465178 Score: 99
Period size: 23 Copynumber: 3.5 Consensus size: 23
25465089 ACCATCGTAG
* *
25465099 CCTTCAAACAAAACCAAGTATAC
1 CCTTCAAACACAACCAAATATAC
* * *
25465122 CCTCCAAGCACAACGAAATATAC
1 CCTTCAAACACAACCAAATATAC
25465145 CCTTC-AACACAACCAAATATAC
1 CCTTCAAACACAACCAAATATAC
*
25465167 CCTACAAACACA
1 CCTTCAAACACA
25465179 TCCACTTAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
22 19 0.40
23 28 0.60
ACGTcount: A:0.46, C:0.35, G:0.04, T:0.15
Consensus pattern (23 bp):
CCTTCAAACACAACCAAATATAC
Found at i:25467068 original size:17 final size:17
Alignment explanation
Indices: 25467036--25467069 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
25467026 AATTATTATT
**
25467036 CAAGAAAAACTTTCATC
1 CAAGAAAAACCATCATC
25467053 CAAGAAAAACCATCATC
1 CAAGAAAAACCATCATC
25467070 TTGCATTTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.50, C:0.26, G:0.06, T:0.18
Consensus pattern (17 bp):
CAAGAAAAACCATCATC
Found at i:25472645 original size:24 final size:25
Alignment explanation
Indices: 25472618--25472672 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
25472608 GAAAGTGAGC
*
25472618 TTAAAATAACTAATATA-AATTGA-T
1 TTAAAATAAATAATATAGAA-TGATT
* *
25472642 TTAAAGTAAATAGTATAGAATGATT
1 TTAAAATAAATAATATAGAATGATT
25472667 TTAAAA
1 TTAAAA
25472673 CAATATGTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 17 0.68
25 8 0.32
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (25 bp):
TTAAAATAAATAATATAGAATGATT
Found at i:25473985 original size:9 final size:9
Alignment explanation
Indices: 25473971--25474007 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
25473961 TATAGTTTGA
25473971 TATTCGAAT
1 TATTCGAAT
25473980 TATTCGAAT
1 TATTCGAAT
*
25473989 TATTCGAGT
1 TATTCGAAT
25473998 TATTCGAAT
1 TATTCGAAT
25474007 T
1 T
25474008 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:25475482 original size:16 final size:16
Alignment explanation
Indices: 25475461--25475528 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
25475451 TTTGGTTCGC
25475461 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
25475477 TGTATTGGATTAGAAG
1 TGTATTGGATTAGAGG
25475493 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
25475509 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
25475525 TGTA
1 TGTA
25475529 ATAGCAAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:25475781 original size:16 final size:16
Alignment explanation
Indices: 25475744--25475785 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
25475734 TTAATCATAT
*
25475744 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
25475760 TT-AAATATATTATAA
1 TTAAAATATATTATAA
25475775 TTAAAATATAT
1 TTAAAATATAT
25475786 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:25475792 original size:14 final size:15
Alignment explanation
Indices: 25475753--25475794 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
25475743 TTTAAACATA
*
25475753 ATTATTATTAAATAT
1 ATTATAATTAAATAT
25475768 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
25475782 A-TATAATTTAATA
1 ATTATAATTAAATA
25475795 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:25475881 original size:66 final size:64
Alignment explanation
Indices: 25475803--25476121 Score: 286
Period size: 66 Copynumber: 5.2 Consensus size: 64
25475793 TAAAATTCTT
25475803 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTG
1 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AATTT-
25475868 A
64 A
** * * * * *
25475869 AATAATTAATATT-AAATAT--ATTT--T--AAT--TAAAATAT-ATAATTTAATA-AAATTCTT
1 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAATT-TA
25475923 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTG
1 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AATTT-
25475988 A
64 A
** * * * * *
25475989 AATAATTAATATT-AAATAT--ATTT--T--AAT--TAAAATAT-ATAATTTAATA-AAATTCTT
1 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAATT-TA
25476043 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTC
1 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAG-AAATTT-
25476108 A
64 A
25476109 AATAATTAATATT
1 AATAATTAATATT
25476122 AAATATGATT
Statistics
Matches: 197, Mismatches: 28, Indels: 56
0.70 0.10 0.20
Matches are distributed among these distances:
54 34 0.17
55 12 0.06
56 16 0.08
57 22 0.11
59 8 0.04
61 8 0.04
63 22 0.11
64 16 0.08
65 11 0.06
66 48 0.24
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.42
Consensus pattern (64 bp):
AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAATTTA
Found at i:25475911 original size:18 final size:17
Alignment explanation
Indices: 25475884--25475918 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
25475874 TTAATATTAA
*
25475884 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
25475902 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
25475919 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:25475963 original size:120 final size:120
Alignment explanation
Indices: 25475750--25476158 Score: 750
Period size: 120 Copynumber: 3.4 Consensus size: 120
25475740 ATATTTAAAC
* *
25475750 ATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
1 ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
25475815 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTGAA
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTGAA
25475870 ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
1 ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
25475935 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTGAA
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTGAA
25475990 ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
1 ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
* *
25476055 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTCAA
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTGAA
*
25476110 ATAATTAATATTAAATATGA-TTTAATT-AAATATATGATTTAATAAAATT
1 ATAATTAATATTAAATAT-ATTTTAATTAAAATATATAATTTAATAAAATT
25476159 TAAAATAATT
Statistics
Matches: 283, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
119 21 0.07
120 261 0.92
121 1 0.00
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.43
Consensus pattern (120 bp):
ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTGAA
Found at i:25476031 original size:18 final size:17
Alignment explanation
Indices: 25476004--25476038 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
25475994 TTAATATTAA
*
25476004 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
25476022 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
25476039 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:25476139 original size:15 final size:15
Alignment explanation
Indices: 25476119--25476157 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
25476109 AATAATTAAT
25476119 ATTAAATATGATTTA
1 ATTAAATATGATTTA
25476134 ATTAAATATATGATTTA
1 ATT-AA-ATATGATTTA
*
25476151 ATAAAAT
1 ATTAAAT
25476158 TTAAAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 5 0.24
16 4 0.19
17 12 0.57
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (15 bp):
ATTAAATATGATTTA
Found at i:25476144 original size:17 final size:17
Alignment explanation
Indices: 25476124--25476157 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
25476114 TTAATATTAA
*
25476124 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
25476141 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
25476158 TTAAAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:25479645 original size:19 final size:20
Alignment explanation
Indices: 25479621--25479665 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
25479611 ATTTTATAAA
25479621 TATTTTG-AATTTTAAAATT
1 TATTTTGCAATTTTAAAATT
** *
25479640 TATTTTGCTTTTTTGAAATT
1 TATTTTGCAATTTTAAAATT
25479660 TATTTT
1 TATTTT
25479666 AAACTCTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.64
Consensus pattern (20 bp):
TATTTTGCAATTTTAAAATT
Found at i:25486705 original size:11 final size:11
Alignment explanation
Indices: 25486689--25486715 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
25486679 TAGAAATTAG
25486689 TTTGTGAAACT
1 TTTGTGAAACT
25486700 TTTGTGAAACT
1 TTTGTGAAACT
25486711 TTTGT
1 TTTGT
25486716 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:25488198 original size:47 final size:47
Alignment explanation
Indices: 25488141--25488286 Score: 151
Period size: 47 Copynumber: 3.2 Consensus size: 47
25488131 ATATAAGAAC
* *
25488141 ATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 ATTTAATATTAAGAATTTTATGAAATTATATATAATTATTAAATTAT
** *
25488188 ATTTAATATTAATTA-TTT-T-AAATTATATA-AATTCATATAAGA--AA
1 ATTTAATATTAAGAATTTTATGAAATTATATATAATT-AT-TAA-ATTAT
* * *
25488232 ATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTAT
1 ATTTAATATTAAGAATTTTATGAAATTATATATAATTATTAAATTAT
25488279 ATTTAATA
1 ATTTAATA
25488287 ATAATTATTT
Statistics
Matches: 78, Mismatches: 12, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
43 3 0.04
44 24 0.31
45 8 0.10
46 8 0.10
47 32 0.41
48 3 0.04
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.49
Consensus pattern (47 bp):
ATTTAATATTAAGAATTTTATGAAATTATATATAATTATTAAATTAT
Found at i:25488236 original size:91 final size:91
Alignment explanation
Indices: 25488124--25488330 Score: 369
Period size: 91 Copynumber: 2.3 Consensus size: 91
25488114 ATGATTTTAG
* *
25488124 TAAATTCATATAAGAACATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
*
25488189 TTTAATATTAATTATTTTAAATTATA
66 TTTAATAATAATTATTTTAAATTATA
*
25488215 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
25488280 TTTAATAATAATTATTTTAAATTATA
66 TTTAATAATAATTATTTTAAATTATA
*
25488306 CAAATTCATATAAGAAAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
25488331 GTTATAATTA
Statistics
Matches: 111, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
91 111 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TTTAATAATAATTATTTTAAATTATA
Found at i:25494009 original size:17 final size:15
Alignment explanation
Indices: 25493982--25494020 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
25493972 ATATAAGAAC
*
25493982 ATTTTATTATTAAATT
1 ATTTTAATATT-AATT
25493998 ATATTTAATATTAATT
1 AT-TTTAATATTAATT
25494014 ATTTTAA
1 ATTTTAA
25494021 ATTGTATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 5 0.24
16 8 0.38
17 8 0.38
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTTTAATATTAATT
Found at i:25494109 original size:47 final size:45
Alignment explanation
Indices: 25493987--25494110 Score: 112
Period size: 47 Copynumber: 2.7 Consensus size: 45
25493977 AGAACATTTT
*
25493987 ATTATTAAATTATATTTAATATTAATTA-TTT-TAAATTGTATAA
1 ATTATTAAATTATATTTAATATTAATTATTTTATAAATTATATAA
* * * ** *
25494030 ATTCATATAAGA--AAATTTATTATCAAGAATTTTATGAAATTATATATC
1 ATT-AT-TAA-ATTATATTTAATATTAATTATTTTAT-AAATTATATA-A
25494078 ATTATTAAATTATATTTAATATTAATTATTTTA
1 ATTATTAAATTATATTTAATATTAATTATTTTA
25494111 AATTTTATTA
Statistics
Matches: 60, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
43 3 0.05
44 14 0.23
45 7 0.12
46 5 0.08
47 28 0.47
48 3 0.05
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.50
Consensus pattern (45 bp):
ATTATTAAATTATATTTAATATTAATTATTTTATAAATTATATAA
Found at i:25494111 original size:26 final size:26
Alignment explanation
Indices: 25494082--25494174 Score: 91
Period size: 26 Copynumber: 3.5 Consensus size: 26
25494072 TATATCATTA
25494082 TTAAATTATATTTAATATTAATTATT
1 TTAAATTATATTTAATATTAATTATT
* *
25494108 TTAAATTTTATTAAATCA-TATATT-TT
1 TTAAATTATATTTAAT-ATTA-ATTATT
* *
25494134 AATTGAAGTATATTTAATATTAATTATT
1 --TTAAATTATATTTAATATTAATTATT
*
25494162 TCAAATTATATTT
1 TTAAATTATATTT
25494175 TATAGTATCA
Statistics
Matches: 52, Mismatches: 9, Indels: 12
0.71 0.12 0.16
Matches are distributed among these distances:
26 28 0.54
27 8 0.15
28 16 0.31
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (26 bp):
TTAAATTATATTTAATATTAATTATT
Found at i:25494116 original size:54 final size:54
Alignment explanation
Indices: 25494057--25494168 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
25494047 TATTATCAAG
* * *
25494057 AATTTTATGAAATTATATATCATT-ATTAAATTATATTTAATATTAATTATTTTA
1 AATTTTATGAAATCATATAT-ATTAATTAAAGTATATTTAATATTAATTATTTCA
* * *
25494111 AATTTTATTAAATCATATATTTTAATTGAAGTATATTTAATATTAATTATTTCA
1 AATTTTATGAAATCATATATATTAATTAAAGTATATTTAATATTAATTATTTCA
25494165 AATT
1 AATT
25494169 ATATTTTATA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
53 2 0.04
54 49 0.96
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (54 bp):
AATTTTATGAAATCATATATATTAATTAAAGTATATTTAATATTAATTATTTCA
Found at i:25494232 original size:16 final size:15
Alignment explanation
Indices: 25494211--25494240 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
25494201 TAAATTCATA
25494211 TAAGAATTTTGATTAT
1 TAAGAATTTT-ATTAT
25494227 TAAGAATTTTATTA
1 TAAGAATTTTATTA
25494241 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (15 bp):
TAAGAATTTTATTAT
Found at i:25494235 original size:120 final size:120
Alignment explanation
Indices: 25494095--25494403 Score: 471
Period size: 120 Copynumber: 2.6 Consensus size: 120
25494085 AATTATATTT
* * * *
25494095 AATATTAATTATTTTA-AATTTTATTAAATCATATATTTTAATTGA-AGTATATTTAATATTAAT
1 AATATTAATTA-TTAAGAATTTTATTAAATTATATATTTTAATT-ATAATATATTTAATAATAAT
* * *
25494158 TAT-TTCAAATTATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAG
64 TATGTT-AAATTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAG
* *
25494215 AATTTTGATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTA
1 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTA
*
25494280 TGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAG
66 TGTTAAATTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAG
*
25494335 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAAAATATTTAATAATAATTA
1 AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTA
25494400 TGTT
66 TGTT
25494404 TAACTATGAT
Statistics
Matches: 173, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
119 4 0.02
120 167 0.97
121 2 0.01
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTA
TGTTAAATTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAG
Found at i:25494248 original size:59 final size:60
Alignment explanation
Indices: 25494184--25494371 Score: 159
Period size: 61 Copynumber: 3.1 Consensus size: 60
25494174 TTATAGTATC
*
25494184 ATATATTATGATTTTAGTAAATTCATATAAGAATTTTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAGTAAATTAATATAAGAATTTTGATTATTAAGAATTTTATTAAA-T
* * * * * * * * * * * *
25494245 ATATATTTTAATTATAATATATTTA-ATAATAATTATG-TTAATTTA-TATTTTA-CAGTAT
1 ATATATTATGATTTTAGTAAATTAATATAAGAATTTTGATT-ATTAAGAATTTTATTA-AAT
* * *
25494303 CATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 -ATATATTATGATTTTAGTAAATTAATATAAGAATTTTGATTATTAAGAATTTTATTAAA-T
25494365 ATATATT
1 ATATATT
25494372 TTAATTATAA
Statistics
Matches: 92, Mismatches: 27, Indels: 16
0.68 0.20 0.12
Matches are distributed among these distances:
58 2 0.02
59 27 0.29
60 26 0.28
61 35 0.38
62 2 0.02
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (60 bp):
ATATATTATGATTTTAGTAAATTAATATAAGAATTTTGATTATTAAGAATTTTATTAAAT
Found at i:25494271 original size:15 final size:15
Alignment explanation
Indices: 25494236--25494287 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
25494226 TTAAGAATTT
*
25494236 TATTAAATTAT-ATA
1 TATTTAATTATAATA
25494250 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
25494264 TATTTAATAATAAT-
1 TATTTAATTATAATA
25494278 TATGTTAATT
1 TAT-TTAATT
25494288 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:25494577 original size:39 final size:43
Alignment explanation
Indices: 25494534--25494640 Score: 123
Period size: 45 Copynumber: 2.5 Consensus size: 43
25494524 TTCTATTATG
*
25494534 CTATTACACCTCTATTCCATT-CAACCAA-ACACAA-GA-ATA
1 CTATTACACCTCTATTCCATTACAACCAACAAACAATGATATA
* * * *
25494573 CTATTACGCCTCTATTCCATTACATCCAACCAAACAATTGATTTG
1 CTATTACACCTCTATTCCATTACAACCAA-CAAACAA-TGATATA
25494618 CTATTACACCTCTATTCCATTAC
1 CTATTACACCTCTATTCCATTAC
25494641 GCCTCTATTC
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
39 20 0.36
40 6 0.11
42 5 0.09
44 2 0.04
45 23 0.41
ACGTcount: A:0.34, C:0.31, G:0.04, T:0.32
Consensus pattern (43 bp):
CTATTACACCTCTATTCCATTACAACCAACAAACAATGATATA
Found at i:25494645 original size:16 final size:16
Alignment explanation
Indices: 25494620--25494657 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
25494610 TTGATTTGCT
25494620 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
25494636 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
*
25494652 AATACA
1 ATTACA
25494658 GCGAACCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.29, C:0.34, G:0.03, T:0.34
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:25496691 original size:17 final size:17
Alignment explanation
Indices: 25496671--25497011 Score: 125
Period size: 17 Copynumber: 18.2 Consensus size: 17
25496661 TAAACGAAAA
*
25496671 TTTTGAAACACGATATT
1 TTTTGAAACACGAAATT
*
25496688 TTTTAGGAAACACGAATTTTCT
1 TTTT--GAAACACGAA--AT-T
*
25496710 TTTTGAAACACGAAAAT
1 TTTTGAAACACGAAATT
*
25496727 TTTTAAAACAC-AAATTT
1 TTTTGAAACACGAAA-TT
**
25496744 TTTTGAAAACATAAAATTT
1 TTTTG-AAACACGAAA-TT
*
25496763 TTGATAAAATACGAAACACGAGGATT
1 TT--T----T--GAAACACGA-AATT
*
25496789 TTTTGAAACACGAAAAT
1 TTTTGAAACACGAAATT
* *
25496806 TTATGAAACACGGTCAATTT
1 TTTTGAAACAC-G--AAATT
*
25496826 TTTTGAAAACACGAAAAT
1 TTTTG-AAACACGAAATT
* *
25496844 TTTTGAAAGACGAGATTTT
1 TTTTGAAACACGA-A-ATT
25496863 TTTTGAAAACACGAAATT
1 TTTTG-AAACACGAAATT
25496881 TTTTGAAACACGAAATTT
1 TTTTGAAACACGAAA-TT
* *
25496899 TTTTGAAAACAAGAAAAT
1 TTTTG-AAACACGAAATT
* * ** *
25496917 TTTCGAAATACGGGA-C
1 TTTTGAAACACGAAATT
*
25496933 TTTTGAAAACAAGGAAATTT
1 TTTTG-AAAC-ACGAAA-TT
*
25496953 TTTTGAAAAAACACTGGAA--
1 TTTTG---AAACAC-GAAATT
25496972 TTTTGAAAGCACGAAGA-T
1 TTTTGAAA-CACGAA-ATT
25496990 TTTTGAAACACGAAAATT
1 TTTTGAAACACG-AAATT
25497008 TTTT
1 TTTT
25497012 AAAAACACAG
Statistics
Matches: 245, Mismatches: 41, Indels: 75
0.68 0.11 0.21
Matches are distributed among these distances:
16 12 0.05
17 67 0.27
18 61 0.25
19 38 0.16
20 31 0.13
21 9 0.04
22 13 0.05
24 1 0.00
25 1 0.00
26 10 0.04
27 2 0.01
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (17 bp):
TTTTGAAACACGAAATT
Found at i:25496714 original size:39 final size:37
Alignment explanation
Indices: 25496671--25496744 Score: 103
Period size: 39 Copynumber: 1.9 Consensus size: 37
25496661 TAAACGAAAA
* * *
25496671 TTTTGAAACACGATATTTTTTAGGAAACACGAATTTTCT
1 TTTTGAAACACGAAAATTTTTA--AAACACAAATTTTCT
25496710 TTTTGAAACACGAAAATTTTTAAAACACAAATTTT
1 TTTTGAAACACGAAAATTTTTAAAACACAAATTTT
25496745 TTTGAAAACA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
37 12 0.38
39 20 0.62
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39
Consensus pattern (37 bp):
TTTTGAAACACGAAAATTTTTAAAACACAAATTTTCT
Found at i:25496719 original size:20 final size:20
Alignment explanation
Indices: 25496671--25496730 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
25496661 TAAACGAAAA
25496671 TTTTGAAACACG-ATATTTT
1 TTTTGAAACACGAATATTTT
**
25496690 TTAGGAAACACGAAT-TTTCT
1 TTTTGAAACACGAATATTT-T
*
25496710 TTTTGAAACACGAAAATTTT
1 TTTTGAAACACGAATATTTT
25496730 T
1 T
25496731 AAAACACAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
19 13 0.39
20 17 0.52
21 3 0.09
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (20 bp):
TTTTGAAACACGAATATTTT
Found at i:25496747 original size:18 final size:19
Alignment explanation
Indices: 25496726--25496764 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
25496716 AACACGAAAA
*
25496726 TTTTT-AAAACA-CAAATT
1 TTTTTGAAAACATAAAATT
25496743 TTTTTGAAAACATAAAATT
1 TTTTTGAAAACATAAAATT
25496762 TTT
1 TTT
25496765 GATAAAATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 6 0.32
19 8 0.42
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.46
Consensus pattern (19 bp):
TTTTTGAAAACATAAAATT
Found at i:25496798 original size:18 final size:17
Alignment explanation
Indices: 25496775--25497011 Score: 122
Period size: 18 Copynumber: 13.0 Consensus size: 17
25496765 GATAAAATAC
*
25496775 GAAACACGAGGATTTTTT
1 GAAACACGA-AATTTTTT
* *
25496793 GAAACACGAAAATTTAT
1 GAAACACGAAATTTTTT
*
25496810 GAAACACGGTCAATTTTTTT
1 GAAACAC-G--AAATTTTTT
*
25496830 GAAAACACGAAAATTTTT
1 G-AAACACGAAATTTTTT
* *
25496848 GAAAGACGAGATTTTTTTT
1 GAAACACGA-A-ATTTTTT
25496867 GAAAACACGAAATTTTTT
1 G-AAACACGAAATTTTTT
25496885 GAAACACGAAATTTTTTT
1 GAAACACGAAA-TTTTTT
* * *
25496903 GAAAACAAGAAAATTTTC
1 G-AAACACGAAATTTTTT
* ** *
25496921 GAAATACGGGA-CTTTT
1 GAAACACGAAATTTTTT
*
25496937 GAAAACAAGGAAATTTTTTT
1 G-AAAC-ACGAAA-TTTTTT
*
25496957 GAAAAAACACTGGAA--TTTT
1 G---AAACAC-GAAATTTTTT
25496976 GAAAGCACGAAGA-TTTTT
1 GAAA-CACGAA-ATTTTTT
25496994 GAAACACGAAAATTTTTT
1 GAAACACG-AAATTTTTT
25497012 AAAAACACAG
Statistics
Matches: 168, Mismatches: 30, Indels: 42
0.70 0.12 0.17
Matches are distributed among these distances:
16 9 0.05
17 47 0.28
18 56 0.33
19 21 0.12
20 20 0.12
21 7 0.04
22 8 0.05
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.32
Consensus pattern (17 bp):
GAAACACGAAATTTTTT
Found at i:25496838 original size:38 final size:36
Alignment explanation
Indices: 25496787--25497024 Score: 191
Period size: 37 Copynumber: 6.5 Consensus size: 36
25496777 AACACGAGGA
*
25496787 TTTTTTG-AAACACGAAAATTTATGAAACACGGTCAAT
1 TTTTTTGAAAACACGAAAATTTTTGAAACACGG--AAT
* *
25496824 TTTTTTGAAAACACGAAAATTTTTGAAAGACGAGATT
1 TTTTTTGAAAACACGAAAATTTTTGAAACACG-GAAT
* *
25496861 TTTTTTGAAAACACGAAATTTTTTGAAACACGAAAT
1 TTTTTTGAAAACACGAAAATTTTTGAAACACGGAAT
* * * *
25496897 TTTTTTGAAAACAAGAAAATTTTCGAAATACGGGA-
1 TTTTTTGAAAACACGAAAATTTTTGAAACACGGAAT
* * *
25496932 -CTTTTGAAAACAAGGAAATTTTTTTGAAAAAACACTGGAA-
1 TTTTTTGAAAAC-ACGAAA-ATTTTTG---AAACAC-GGAAT
* * * *
25496972 --TTTTGAAAGCACGAAGATTTTTGAAACACGAAAA
1 TTTTTTGAAAACACGAAAATTTTTGAAACACGGAAT
*
25497006 TTTTTTAAAAACACAGAAA
1 TTTTTTGAAAACAC-GAAA
25497025 CATGAAAATT
Statistics
Matches: 162, Mismatches: 27, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
33 3 0.02
34 16 0.10
35 5 0.03
36 46 0.28
37 48 0.30
38 26 0.16
39 15 0.09
40 3 0.02
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (36 bp):
TTTTTTGAAAACACGAAAATTTTTGAAACACGGAAT
Found at i:25497181 original size:17 final size:17
Alignment explanation
Indices: 25497135--25497181 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
25497125 TTGAAAACAC
25497135 GAAAACACGGACATTTTT
1 GAAAACACGGA-ATTTTT
* *
25497153 -CAAACAAGGGAATTTTT
1 GAAAAC-ACGGAATTTTT
25497170 GAAAACACGGAA
1 GAAAACACGGAA
25497182 AAATTTTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 5
0.72 0.12 0.16
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.45, C:0.15, G:0.19, T:0.21
Consensus pattern (17 bp):
GAAAACACGGAATTTTT
Found at i:25497277 original size:18 final size:16
Alignment explanation
Indices: 25497246--25497291 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 16
25497236 TATTATTATT
25497246 ATTTTGAAACATGAGAA
1 ATTTTGAAACATGA-AA
25497263 ATTTTGAAGACATGAAA
1 ATTTTGAA-ACATGAAA
25497280 ATTTTTGAAACA
1 A-TTTTGAAACA
25497292 CGATTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 14 0.52
18 13 0.48
ACGTcount: A:0.46, C:0.07, G:0.15, T:0.33
Consensus pattern (16 bp):
ATTTTGAAACATGAAA
Found at i:25498027 original size:6 final size:6
Alignment explanation
Indices: 25498018--25498067 Score: 57
Period size: 6 Copynumber: 8.3 Consensus size: 6
25498008 TTTTTTTCAT
* * *
25498018 TTTTTC TTTTTC TTTCTC TTTTTC TTCTCTC TTTTTC -CTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TT-TTTC TTTTTC TTTTTC TTTTTC
25498066 TT
1 TT
25498068 CCTCTTCTTC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
5 4 0.11
6 27 0.75
7 5 0.14
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTTTC
Found at i:25498045 original size:15 final size:13
Alignment explanation
Indices: 25498022--25498073 Score: 67
Period size: 12 Copynumber: 4.3 Consensus size: 13
25498012 TTTCATTTTT
25498022 TCTTTTTCTT-TC
1 TCTTTTTCTTCTC
25498034 TCTTTTTCTTCTC
1 TCTTTTTCTTCTC
*
25498047 TCTTTTTC--CTT
1 TCTTTTTCTTCTC
25498058 TCTTTTTCTTC-C
1 TCTTTTTCTTCTC
25498070 TCTT
1 TCTT
25498074 CTTCGGGCCG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
11 10 0.29
12 14 0.40
13 11 0.31
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (13 bp):
TCTTTTTCTTCTC
Found at i:25498072 original size:25 final size:25
Alignment explanation
Indices: 25498022--25498073 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 25
25498012 TTTCATTTTT
*
25498022 TCTTTTTCTTTCTCTTTTTCTTCTC
1 TCTTTTTCCTTCTCTTTTTCTTCTC
25498047 TCTTTTTCCTT-TCTTTTTCTTC-C
1 TCTTTTTCCTTCTCTTTTTCTTCTC
25498070 TCTT
1 TCTT
25498074 CTTCGGGCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 5 0.19
24 11 0.42
25 10 0.38
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (25 bp):
TCTTTTTCCTTCTCTTTTTCTTCTC
Found at i:25498182 original size:14 final size:15
Alignment explanation
Indices: 25498163--25498191 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
25498153 TTCTCTTCCC
25498163 CTCTTC-CTTTTCTT
1 CTCTTCTCTTTTCTT
25498177 CTCTTCTCTTTTCTT
1 CTCTTCTCTTTTCTT
25498192 TATTTGATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (15 bp):
CTCTTCTCTTTTCTT
Found at i:25498656 original size:29 final size:29
Alignment explanation
Indices: 25498600--25498787 Score: 145
Period size: 29 Copynumber: 6.5 Consensus size: 29
25498590 ATTTGAGGCA
* * *
25498600 AAAATGTAATTT-TAGGAAAATATGGGGCT
1 AAAATGTAATTTATA-GAAAGTTTAGGGCT
*
25498629 AAAATGTAATTTATAGAAAGTTTAGGGCC
1 AAAATGTAATTTATAGAAAGTTTAGGGCT
* * * *
25498658 CAAATGAAATTTAGA-AAAGTTTAGGGGT
1 AAAATGTAATTTATAGAAAGTTTAGGGCT
*
25498686 AGAAATGTAATTT-TAAGAAAGTTTAGGGGGT
1 A-AAATGTAATTTAT-AGAAAGTTTA-GGGCT
* * *
25498717 GAAATATAATTT-T-GAAAAGTTTAGGGTT
1 AAAATGTAATTTATAG-AAAGTTTAGGGCT
* * *
25498745 GAAATGTAATTTAGA-AAAGTTTAGGGGCC
1 AAAATGTAATTTATAGAAAGTTTA-GGGCT
25498774 AAAATGTAATTTAT
1 AAAATGTAATTTAT
25498788 GTTTTTTTGA
Statistics
Matches: 129, Mismatches: 21, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
28 35 0.27
29 68 0.53
30 21 0.16
31 5 0.04
ACGTcount: A:0.41, C:0.03, G:0.23, T:0.32
Consensus pattern (29 bp):
AAAATGTAATTTATAGAAAGTTTAGGGCT
Found at i:25498692 original size:58 final size:58
Alignment explanation
Indices: 25498630--25498786 Score: 187
Period size: 58 Copynumber: 2.7 Consensus size: 58
25498620 TATGGGGCTA
*
25498630 AAATGTAATTTATAGAAAGTTTA-GGGCCCAAATGAAATTTAGAAAAGTTTAGGGGTAG
1 AAATGTAATTTATAGAAAGTTTAGGGGCCAAAATGAAATTTAGAAAAGTTTA-GGGTAG
*** * *
25498688 AAATGTAATTT-TAAGAAAGTTTAGGGGGTGAAAT-ATAATTTTGAAAAGTTTAGGGTTG
1 AAATGTAATTTAT-AGAAAGTTTAGGGGCCAAAATGA-AATTTAGAAAAGTTTAGGGTAG
* *
25498746 AAATGTAATTTAGA-AAAGTTTAGGGGCCAAAATGTAATTTA
1 AAATGTAATTTATAGAAAGTTTAGGGGCCAAAATGAAATTTA
25498787 TGTTTTTTTG
Statistics
Matches: 83, Mismatches: 11, Indels: 11
0.79 0.10 0.10
Matches are distributed among these distances:
57 22 0.27
58 39 0.47
59 22 0.27
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.32
Consensus pattern (58 bp):
AAATGTAATTTATAGAAAGTTTAGGGGCCAAAATGAAATTTAGAAAAGTTTAGGGTAG
Found at i:25498739 original size:87 final size:87
Alignment explanation
Indices: 25498600--25498785 Score: 225
Period size: 87 Copynumber: 2.1 Consensus size: 87
25498590 ATTTGAGGCA
* *
25498600 AAAATGTAATTTTAGGAAAATATGGGGCTAAAATGTAATTTATAGAAAGTTTAGGGCCCAAATGA
1 AAAATGTAATTTTAAGAAAATATGGGGCTAAAATATAATTTATAGAAAGTTTAGGGCCCAAATGA
*
25498665 AATTTAGAAAAGTTTAGGGG-T
66 AATTTAGAAAAGTTTAGGGGCC
* * * * ***
25498686 AGAAATGTAATTTTAAGAAAGTTTAGGGGGTGAAATATAATTT-T-GAAAAGTTTAGGGTTGAAA
1 A-AAATGTAATTTTAAGAAAATAT-GGGGCTAAAATATAATTTATAG-AAAGTTTAGGGCCCAAA
*
25498749 TGTAATTTAGAAAAGTTTAGGGGCC
63 TGAAATTTAGAAAAGTTTAGGGGCC
25498774 AAAATGTAATTT
1 AAAATGTAATTT
25498786 ATGTTTTTTT
Statistics
Matches: 85, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
86 2 0.02
87 67 0.79
88 16 0.19
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.32
Consensus pattern (87 bp):
AAAATGTAATTTTAAGAAAATATGGGGCTAAAATATAATTTATAGAAAGTTTAGGGCCCAAATGA
AATTTAGAAAAGTTTAGGGGCC
Found at i:25498748 original size:28 final size:29
Alignment explanation
Indices: 25498630--25498786 Score: 158
Period size: 29 Copynumber: 5.4 Consensus size: 29
25498620 TATGGGGCTA
* ***
25498630 AAATGTAATTTATAGAAAGTTTA-GGGCCC
1 AAATGTAATTTAGA-AAAGTTTAGGGGTTG
* *
25498659 AAATGAAATTTAGAAAAGTTTAGGGGTAG
1 AAATGTAATTTAGAAAAGTTTAGGGGTTG
*
25498688 AAATGTAATTTTA-AGAAAGTTTAGGGGGTG
1 AAATGTAA-TTTAGA-AAAGTTTAGGGGTTG
* *
25498718 AAATATAATTTTGAAAAGTTTA-GGGTTG
1 AAATGTAATTTAGAAAAGTTTAGGGGTTG
***
25498746 AAATGTAATTTAGAAAAGTTTAGGGGCCA
1 AAATGTAATTTAGAAAAGTTTAGGGGTTG
25498775 AAATGTAATTTA
1 AAATGTAATTTA
25498787 TGTTTTTTTG
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
28 33 0.31
29 49 0.46
30 25 0.23
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.32
Consensus pattern (29 bp):
AAATGTAATTTAGAAAAGTTTAGGGGTTG
Found at i:25499230 original size:78 final size:76
Alignment explanation
Indices: 25499145--25499287 Score: 207
Period size: 76 Copynumber: 1.9 Consensus size: 76
25499135 TGAAAAATAG
* * *
25499145 AAATTGAAGAATACCTCGGCATATGAC-CTAAGGCTCAACTCACCTCTTGTAATATGAGTTGATT
1 AAATTGAAAAATACCTC-G-ATATGACTC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
25499209 TTTGTGAAAATCAA
63 TTTGTGAAAATCAA
* *
25499223 AAATTGAAAAATACCTCGATGTGACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAAATACCTCGATATGACTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
25499288 TACTTTTTCT
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
76 41 0.69
77 2 0.03
78 16 0.27
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (76 bp):
AAATTGAAAAATACCTCGATATGACTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
GTGAAAATCAA
Found at i:25499320 original size:87 final size:87
Alignment explanation
Indices: 25499213--25499375 Score: 265
Period size: 87 Copynumber: 1.9 Consensus size: 87
25499203 TTGATTTTTG
* * *
25499213 TGAAAATCAAAAATTGAAAAATACCTCGATG-TGACTCGAGGCTCAACTCACCTCTCGCAATATG
1 TGAAAAACAAAAATTGAAAAATACCTC-AGGATGACCCGAGGCTCAACTCACCTCTCGCAATATG
25499277 AGTTGATTTTTTACTTTTTCTTT
65 AGTTGATTTTTTACTTTTTCTTT
* *
25499300 TGAAAAACAGAAATTGAAAAATACCTCAGGATGACCCGAGGCTCAACTCACCTCTCGCATTATGA
1 TGAAAAACAAAAATTGAAAAATACCTCAGGATGACCCGAGGCTCAACTCACCTCTCGCAATATGA
25499365 GTTGATTTTTT
66 GTTGATTTTTT
25499376 GAAAAACAAA
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
86 2 0.03
87 68 0.97
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (87 bp):
TGAAAAACAAAAATTGAAAAATACCTCAGGATGACCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTACTTTTTCTTT
Found at i:25499437 original size:81 final size:81
Alignment explanation
Indices: 25499297--25500505 Score: 1377
Period size: 81 Copynumber: 15.3 Consensus size: 81
25499287 TTACTTTTTC
*
25499297 TTTTGAAAAACAGAAA-TT-GAA-AAATACCTCAG-GAT--GACCCGAGGCTCAACTCACCTCTC
1 TTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCG-TGCGACCCGAGGCTCAACTCACCTCTC
*
25499356 GCATTATGAGTTGA-TT
65 GCAATATGAGTTGATTT
* * *
25499372 TTTTGAAAAACAAAAATTTTAAAAGAAATACCTCAACGTGCGACCCGAGGCTCAACTCACTTCTC
1 TTTTGAAAAACAGAAA-TTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTC
*
25499437 GCGATATGAGTTGATTT
65 GCAATATGAGTTGATTT
* * ** * * *
25499454 TTTTGAAAATAGAAAAACATAAATTGAAAATACCTCAGCGT--GACCCGAGGCTCAACTTACCTT
1 TTTTGAAAA-ACAGAAATTTAAA-AG-AAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTC
*
25499517 TCGCATTATGAGTTGATTT
63 TCGCAATATGAGTTGATTT
*
25499536 TTTTGAAAAA-AGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACATCTCG
1 TTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCG
25499600 CAATATGAGTTGATTTT
66 CAATATGAGTTGA-TTT
* ** * * *
25499617 TTTTGCAAAATAGAGAAACATAAATTGAAAATACCTCAGCG-G-GACCCGGGGCTCAACTCATCT
1 TTTTG-AAAA-ACAGAAATTTAAA-AG-AAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCT
* *
25499680 CTAGCAATATGAGTTG--CT
62 CTCGCAATATGAGTTGATTT
* * * * *
25499698 TTTTGAAAAGCA-AAAATT-GAA-AAATACCTC-GACGT--GACTCGAGACTCAACTCACCTCTC
1 TTTTGAAAAACAGAAATTTAAAAGAAATACCTCAG-CGTGCGACCCGAGGCTCAACTCACCTCTC
*
25499757 GCAGTATGAGTTGA--T
65 GCAATATGAGTTGATTT
* ** *
25499772 TTTTGAAAAACAGAAATTT---A-AAATACCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCG
1 TTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCG
*
25499833 CAATATGAGCTGATTT
66 CAATATGAGTTGATTT
* *
25499849 TTTTG--AAA-A-AAATTTAAAAGAAATACCTCAGCG-GCGACCCGAGGCTGAACTCACTTCTCG
1 TTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCG
25499909 CAATATGAGTTGATTT
66 CAATATGAGTTGATTT
* *
25499925 TTTTGAAAAACAGAGATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCG
1 TTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCG
25499990 CAATATGAGTTGATTT
66 CAATATGAGTTGATTT
* *
25500006 TTTTGAAAAACAGAGATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCG
1 TTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCG
*
25500071 CAATATGAGTTGA--C
66 CAATATGAGTTGATTT
** *
25500085 TTTTGAAAAACAGAAA--T-CGA-AAATACCTCAACGT--GACCCGAGGCTCAACTCACCTCTCG
1 TTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCG
*
25500144 CATTATGAGTTGA-TT
66 CAATATGAGTTGATTT
* *
25500159 TTTTGAAAAAACAGAAATTAAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTTACCTCTC
1 TTTTG-AAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTC
25500224 GCAATATGAGTTGATTT
65 GCAATATGAGTTGATTT
** * * *
25500241 TTTTGAAAAACAGAGAAACATAAATTGAAGATACCTCAGCAT--GACCCGAGGCTCAACTTACCT
1 TTTTGAAAAAC--AGAAATTTAAA-AGAA-ATACCTCAGCGTGCGACCCGAGGCTCAACTCACCT
25500304 CTCGCAATATGAGTTGATTT
62 CTCGCAATATGAGTTGATTT
* * *
25500324 TTTTGAAAAACGGAGATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCG
1 TTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCG
25500389 CAATATGAGTTGATTT
66 CAATATGAGTTGATTT
* *
25500405 TTTTG-AAAATAGAAATTT--AA-AAATACCTC-GACGT--GACTCGAGGCTCAACTCACCTCTC
1 TTTTGAAAAACAGAAATTTAAAAGAAATACCTCAG-CGTGCGACCCGAGGCTCAACTCACCTCTC
25500463 GCAATATGAGTTGA-TT
65 GCAATATGAGTTGATTT
* *
25500479 TTTTGAAAAATAGAAATTGAAAA-AAAT
1 TTTTGAAAAACAGAAATTTAAAAGAAAT
25500506 TTCTTGAAAG
Statistics
Matches: 984, Mismatches: 94, Indels: 110
0.83 0.08 0.09
Matches are distributed among these distances:
73 54 0.05
74 68 0.07
75 129 0.13
76 47 0.05
77 38 0.04
78 26 0.03
79 53 0.05
80 83 0.08
81 263 0.27
82 71 0.07
83 68 0.07
84 58 0.06
85 13 0.01
86 13 0.01
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (81 bp):
TTTTGAAAAACAGAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTT
Found at i:25499645 original size:164 final size:163
Alignment explanation
Indices: 25499175--25500505 Score: 1517
Period size: 164 Copynumber: 8.4 Consensus size: 163
25499165 ATATGACCTA
* * * * * *
25499175 AGGCTCAACTCACCTCTTGTAATATGAGTTGATTTTTGTGAAAATCA-AAAATT-GAA-AAATAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATAC
* * * * *****
25499237 CTC-G-ATGTGACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTACTTTTTCTTT
66 CTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTT--TTTGAAAAT
* * *
25499300 TGAAAAACAGAAATTGAAAAATACCTCAG-GATGACCCG
127 AGAGAAACATAAATTG-AAAATACCTCAGCG-TGACCCG
* *
25499338 AGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTTGAAAAACAAAAATTTTAAAAGAAATA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAA-TTTAAAAGAAATA
* *
25499402 CCTCAACGTGCGACCCGAGGCTCAACTCACTTCTCGCGATATGAGTTGATTTTTTTGAAAATAGA
65 CCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAAATAGA
*
25499467 AAAACATAAATTGAAAATACCTCAGCGTGACCCG
130 GAAACATAAATTGAAAATACCTCAGCGTGACCCG
* * *
25499501 AGGCTCAACTTACCTTTCGCATTATGAGTTGATTTTTTTGAAAAA-AGAAATTTAAAAGAAATAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATAC
*
25499565 CTCAGCGTGCGACCCGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTTTGCAAAATAG
66 CTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTTTG-AAAATAG
*
25499630 AGAAACATAAATTGAAAATACCTCAGCGGGACCCG
129 AGAAACATAAATTGAAAATACCTCAGCGTGACCCG
* * * * * * *
25499665 GGGCTCAACTCATCTCTAGCAATATGAGTTG--CTTTTTGAAAAGCA-AAAATT-GAA-AAATAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATAC
* * * * *
25499725 CTC-GACGT--GACTCGAGACTCAACTCACCTCTCGCAGTATGAGTTGA--TTTTTGAAAA-ACA
66 CTCAG-CGTGCGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAAATAGA
* *
25499784 G-AA-AT---TT-AAAATACCTCGGTATGTGACCCG
130 GAAACATAAATTGAAAATACCTCAG--CGTGACCCG
*
25499814 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG--AAA-A-AAATTTAAAAGAAATAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATAC
* *
25499875 CTCAGCG-GCGACCCGAGGCTGAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAAA-ACAG
66 CTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAG
* ** *
25499938 AGATTTAAA-AG-AAATACCTCAGCGTGCGACCCG
131 AAACATAAATTGAAAATACCTCAGCGT--GACCCG
* *
25499971 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAGATTTAAAAGAAATAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATAC
*
25500036 CTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA--CTTTTG-----A-A-
66 CTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAG
* * *
25500092 AAACAGAAATCGAAAATACCTCAACGTGACCCG
131 AAACATAAATTGAAAATACCTCAGCGTGACCCG
* *
25500125 AGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTTGAAAAAACAGAAATTAAAAAGAAATA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAAACAGAAATTTAAAAGAAATA
* * *
25500189 CCTCAGCGTGCGACCCGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAG
65 CCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTG-AAAATAG
* *
25500254 AGAAACATAAATTGAAGATACCTCAGCATGACCCG
129 AGAAACATAAATTGAAAATACCTCAGCGTGACCCG
* * *
25500289 AGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACGGAGATTTAAAAGAAATAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATAC
25500354 CTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAAAT--AG
66 CTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAG
* *
25500417 -AA-AT---TTAAAAATACCTC-GACGTGACTCG
131 AAACATAAATTGAAAATACCTCAG-CGTGACCCG
* *
25500445 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAATAGAAATTGAAAA-AAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAAT
25500506 TTCTTGAAAG
Statistics
Matches: 1013, Mismatches: 104, Indels: 111
0.82 0.08 0.09
Matches are distributed among these distances:
147 11 0.01
148 8 0.01
149 38 0.04
150 11 0.01
151 42 0.04
152 2 0.00
153 24 0.02
154 119 0.12
155 33 0.03
156 68 0.07
157 54 0.05
158 34 0.03
159 6 0.01
160 20 0.02
161 27 0.03
162 126 0.12
163 99 0.10
164 232 0.23
165 9 0.01
166 13 0.01
168 37 0.04
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (163 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATAC
CTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAAATAGAG
AAACATAAATTGAAAATACCTCAGCGTGACCCG
Found at i:25500342 original size:318 final size:317
Alignment explanation
Indices: 25499103--25500502 Score: 1596
Period size: 320 Copynumber: 4.4 Consensus size: 317
25499093 GATCCAAAAT
* * ** * *
25499103 TCAACTCACTTCTC-AAATTATGTGTTGA-GCTTTGAAAAATAGAAATTGAAGAATACCTCGGCA
1 TCAACTCACTTCTCGCAA-TATGAGTTGATTTTTTGAAAAACAGAAATTGAA-AATACCTC--AA
** ** * *
25499166 TATGACCTAAGGCTCAACTCACCTCTTGTAATATGAGTTGATTTTTGTGAAAATCAA-AAATT--
62 CGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-TGAAAA--AAGAAATTAA
* * * *
25499228 GAA-AAATACCTC-G-ATGTGACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTA
124 AAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-
******** * * *
25499290 CTTTTTCTTTTGAAAAACAGAAATTGAAAAATACCTCAGGATGACCCGAGGCTCAACTCACCTCT
188 -TTGAAAAACAGAGAAACATAAATTG-AAAATACCTCAGCATGACCCGAGGCTCAACTCACCTCT
* *
25499355 CGCATTATGAGTTGATTTTTTGAAAAACAAAAATTTTAAAAGAAATACCTCAACGTGCGACCCGA
251 CGCAATATGAGTTGATTTTTTGAAAAACAAAAA-TTTAAAAGAAATACCTCAGCGTGCGACCCGA
25499420 GGC
315 GGC
* *
25499423 TCAACTCACTTCTCGCGATATGAGTTGATTTTTTTGAAAATAGAAAAACATAAATTGAAAATACC
1 TCAACTCACTTCTCGCAATATGAGTTGA--TTTTT-----T-GAAAAACAGAAATTGAAAATACC
* * * *
25499488 TCAGCGTGACCCGAGGCTCAACTTACCTTTCGCATTATGAGTTGATTTTTTTGAAAAAAGAAATT
58 TCAACGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAAAGAAATT
* *
25499553 TAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTT
122 AAAAAGAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * ** * * *
25499618 TTTGCAAAATAGAGAAACATAAATTGAAAATACCTCAGCGGGACCCGGGGCTCAACTCATCTCTA
187 TTTGAAAAACAGAGAAACATAAATTGAAAATACCTCAGCATGACCCGAGGCTCAACTCACCTCTC
* * * *
25499683 GCAATATGAGTTG-CTTTTTGAAAAGCAAAAA-TT-GAA-AAATACCTC-GACGT--GACTCGAG
252 GCAATATGAGTTGATTTTTTGAAAAACAAAAATTTAAAAGAAATACCTCAG-CGTGCGACCCGAG
*
25499741 AC
316 GC
* * * * *
25499743 TCAACTCACCTCTCGCAGTATGAGTTGA-TTTTTGAAAAACAGAAATTTAAAATACCTCGGTATG
1 TCAACTCACTTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTC--AACG
* *
25499807 TGACCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG--AAAA-AAATTTAAAAG
64 TGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAAAGAAATTAAAAAG
* *
25499869 AAATACCTCAGCG-GCGACCCGAGGCTGAACTCACTTCTCGCAATATGAGTTGA-TTTTTTTGAA
128 AAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAA
** * * *
25499932 AAACAGAG--ATTTAAA-AG-AAATACCTCAGCGTGCGACCCGAGGCTCAACTCACTTCTCGCAA
193 AAACAGAGAAACATAAATTGAAAATACCTCAGCAT--GACCCGAGGCTCAACTCACCTCTCGCAA
* *
25499993 TATGAGTTGATTTTTTTGAAAAACAGAGATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGC
256 TATGAGTTGA-TTTTTTGAAAAACAAAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGC
* *
25500056 TCAACTCACTTCTCGCAATATGAGTTGA-CTTTTGAAAAACAGAAATCGAAAATACCTCAACGTG
1 TCAACTCACTTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTG
*
25500120 ACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAAAACAGAAATTAAAAAGA
66 ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAAA-AGAAATTAAAAAGA
*
25500185 AATACCTCAGCGTGCGACCCGAGGCTCAACTTACCTCTCGCAATATGAGTTGA-TTTTTTTGAAA
129 AATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAA
* *
25500249 AACAGAGAAACATAAATTGAAGATACCTCAGCATGACCCGAGGCTCAACTTACCTCTCGCAATAT
194 AACAGAGAAACATAAATTGAAAATACCTCAGCATGACCCGAGGCTCAACTCACCTCTCGCAATAT
** *
25500314 GAGTTGATTTTTTTGAAAAACGGAGATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGC
259 GAGTTGA-TTTTTTGAAAAACAAAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGC
* * *
25500374 TCAACTCACTTCTCGCAATATGAGTTGATTTTTTTG-AAAATAGAAATTTAAAAATACCTCGACG
1 TCAACTCACTTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAA-TTGAAAATACCTCAACG
*
25500438 TGACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAAA
64 TGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA-AGAAATT-AAAAA
25500503 AATTTCTTGA
Statistics
Matches: 931, Mismatches: 105, Indels: 88
0.83 0.09 0.08
Matches are distributed among these distances:
304 13 0.01
305 1 0.00
306 38 0.04
308 30 0.03
309 40 0.04
310 33 0.04
311 78 0.08
312 2 0.00
313 108 0.12
314 1 0.00
315 23 0.02
316 55 0.06
317 4 0.00
318 121 0.13
319 22 0.02
320 136 0.15
321 1 0.00
322 12 0.01
323 4 0.00
324 4 0.00
325 5 0.01
326 54 0.06
327 52 0.06
328 34 0.04
329 16 0.02
330 44 0.05
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (317 bp):
TCAACTCACTTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTG
ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAGAAATTAAAAAGAAA
TACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAA
CAGAGAAACATAAATTGAAAATACCTCAGCATGACCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTGAAAAACAAAAATTTAAAAGAAATACCTCAGCGTGCGACCCGAGGC
Found at i:25501338 original size:1 final size:1
Alignment explanation
Indices: 25501319--25501417 Score: 54
Period size: 1 Copynumber: 99.0 Consensus size: 1
25501309 CTTAATTCTC
* * * * * * * * * * *
25501319 TTTTTCTTTTCTTTCTTTTTTGTTTTTTGTTTTTTGTTTTTTCTGTTTTGTTTTTGTTTTTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * *
25501384 TTTTTGTTTTTGTTTTTGTTTTTGTCTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
25501418 CCAGGCATAA
Statistics
Matches: 66, Mismatches: 32, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
1 66 1.00
ACGTcount: A:0.00, C:0.05, G:0.11, T:0.84
Consensus pattern (1 bp):
T
Found at i:25501346 original size:7 final size:7
Alignment explanation
Indices: 25501334--25501406 Score: 89
Period size: 7 Copynumber: 10.7 Consensus size: 7
25501324 CTTTTCTTTC
25501334 TTTTTTG
1 TTTTTTG
25501341 TTTTTTG
1 TTTTTTG
25501348 TTTTTTG
1 TTTTTTG
*
25501355 TTTTTTC
1 TTTTTTG
*
25501362 TGTTTTG
1 TTTTTTG
25501369 -TTTTTG
1 TTTTTTG
*
25501375 TTTTTTT
1 TTTTTTG
25501382 TGTTTTTG
1 T-TTTTTG
25501390 -TTTTTG
1 TTTTTTG
25501396 -TTTTTG
1 TTTTTTG
25501402 TTTTT
1 TTTTT
25501407 GTCTTTTTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
6 17 0.30
7 35 0.61
8 5 0.09
ACGTcount: A:0.00, C:0.01, G:0.14, T:0.85
Consensus pattern (7 bp):
TTTTTTG
Found at i:25501380 original size:27 final size:26
Alignment explanation
Indices: 25501319--25501415 Score: 106
Period size: 27 Copynumber: 3.5 Consensus size: 26
25501309 CTTAATTCTC
*
25501319 TTTTTCTTTTCTTTCTTTTTTGTTTTTTG
1 TTTTT-TTTT-TTTCTGTTTTG-TTTTTG
25501348 TTTTTTGTTTTTTCTGTTTTGTTTTTG
1 TTTTTT-TTTTTTCTGTTTTGTTTTTG
25501375 TTTTTTTTGTTTT-TGTTTTTGTTTTTG
1 TTTTTTTT-TTTTCTG-TTTTGTTTTTG
25501402 TTTTTGTCTTTTTT
1 TTTTT-T-TTTTTT
25501416 TTCCAGGCAT
Statistics
Matches: 62, Mismatches: 1, Indels: 11
0.84 0.01 0.15
Matches are distributed among these distances:
26 4 0.06
27 32 0.52
28 16 0.26
29 10 0.16
ACGTcount: A:0.00, C:0.05, G:0.11, T:0.84
Consensus pattern (26 bp):
TTTTTTTTTTTTCTGTTTTGTTTTTG
Found at i:25501414 original size:21 final size:20
Alignment explanation
Indices: 25501334--25501417 Score: 95
Period size: 21 Copynumber: 4.2 Consensus size: 20
25501324 CTTTTCTTTC
25501334 TTTTTTGTTTTTTGTTTTTTGT
1 TTTTTTG-TTTTTG-TTTTTGT
25501356 TTTTTCTG-TTTTGTTTTTGTT
1 TTTTT-TGTTTTTGTTTTTG-T
25501377 TTTTTTGTTTTTGTTTTTG-
1 TTTTTTGTTTTTGTTTTTGT
25501396 -TTTTTGTTTTTGTCTTTT-T
1 TTTTTTGTTTTTGT-TTTTGT
25501415 TTT
1 TTT
25501418 CCAGGCATAA
Statistics
Matches: 56, Mismatches: 0, Indels: 14
0.80 0.00 0.20
Matches are distributed among these distances:
18 13 0.23
19 4 0.07
20 10 0.18
21 22 0.39
22 5 0.09
23 2 0.04
ACGTcount: A:0.00, C:0.02, G:0.13, T:0.85
Consensus pattern (20 bp):
TTTTTTGTTTTTGTTTTTGT
Found at i:25507359 original size:15 final size:17
Alignment explanation
Indices: 25507325--25507382 Score: 73
Period size: 17 Copynumber: 3.4 Consensus size: 17
25507315 ACGAATTTTC
25507325 TTTTTGAAACACAAAAA
1 TTTTTGAAACACAAAAA
* **
25507342 TTTTTAAAACACAAATT
1 TTTTTGAAACACAAAAA
25507359 TTTTTGAAA-ACATAAAA
1 TTTTTGAAACACA-AAAA
25507376 TTTTTGA
1 TTTTTGA
25507383 TAAAATACGA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
16 3 0.09
17 31 0.91
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.40
Consensus pattern (17 bp):
TTTTTGAAACACAAAAA
Found at i:25507363 original size:18 final size:18
Alignment explanation
Indices: 25507311--25507380 Score: 52
Period size: 17 Copynumber: 3.8 Consensus size: 18
25507301 ATTTTTTAGG
* *
25507311 AAACACGAATTTTCTTTTTG
1 AAACAC-AAATTT-TTTTTA
**
25507331 AAACACAAA-AATTTTTA
1 AAACACAAATTTTTTTTA
*
25507348 AAACACAAATTTTTTTGA
1 AAACACAAATTTTTTTTA
*
25507366 AAACATAAAATTTTT
1 AAACA-CAAATTTTT
25507381 GATAAAATAC
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
17 14 0.35
18 10 0.25
19 10 0.25
20 6 0.15
ACGTcount: A:0.46, C:0.11, G:0.04, T:0.39
Consensus pattern (18 bp):
AAACACAAATTTTTTTTA
Found at i:25507423 original size:18 final size:18
Alignment explanation
Indices: 25507391--25507540 Score: 101
Period size: 18 Copynumber: 8.2 Consensus size: 18
25507381 GATAAAATAC
**
25507391 GAAACACGAGGATTTTTT
1 GAAACACGAAAATTTTTT
*
25507409 GAAACACGAAAA-TTTAT
1 GAAACACGAAAATTTTTT
* * *
25507426 GAAACATGGTCAACTTTTTT
1 GAAACA-CG-AAAATTTTTT
*
25507446 GAAAACAC-AAAAATTTTT
1 G-AAACACGAAAATTTTTT
* * *
25507464 GAAAGACGGGAATTTTTTT
1 GAAACAC-GAAAATTTTTT
25507483 GAAAACACGAAAA-TTTTT
1 G-AAACACGAAAATTTTTT
* *
25507501 GAAACACGGAATTTTTTT
1 GAAACACGAAAATTTTTT
*
25507519 GAAAACAAGAAAA-TTTTT
1 G-AAACACGAAAATTTTTT
25507537 GAAA
1 GAAA
25507541 TACGGGACTT
Statistics
Matches: 100, Mismatches: 23, Indels: 19
0.70 0.16 0.13
Matches are distributed among these distances:
17 27 0.27
18 37 0.37
19 21 0.21
20 10 0.10
21 5 0.05
ACGTcount: A:0.43, C:0.10, G:0.15, T:0.31
Consensus pattern (18 bp):
GAAACACGAAAATTTTTT
Found at i:25507477 original size:17 final size:17
Alignment explanation
Indices: 25507391--25507570 Score: 67
Period size: 18 Copynumber: 10.0 Consensus size: 17
25507381 GATAAAATAC
*
25507391 GAAACACGAGGATTTTTT
1 GAAACACG-GGAATTTTT
** *
25507409 GAAACACGAAAATTTAT
1 GAAACACGGGAATTTTT
* *
25507426 GAAACATGGTCAACTTTTTT
1 GAAACACGG-GAA--TTTTT
***
25507446 GAAAACACAAAAATTTTT
1 G-AAACACGGGAATTTTT
*
25507464 GAAAGACGGGAATTTTTTT
1 GAAACACGGGAA--TTTTT
**
25507483 GAAAACACGAAAATTTTT
1 G-AAACACGGGAATTTTT
25507501 GAAACAC-GGAATTTTTTT
1 GAAACACGGGAA--TTTTT
* **
25507519 GAAAACAAGAAAATTTTT
1 G-AAACACGGGAATTTTT
* *
25507537 GAAATACGGG-ACTTTT
1 GAAACACGGGAATTTTT
* *
25507553 GAAAACAAGGAAATTTTT
1 G-AAACACGGGAATTTTT
25507571 TTGAAAAAAC
Statistics
Matches: 116, Mismatches: 33, Indels: 26
0.66 0.19 0.15
Matches are distributed among these distances:
16 8 0.07
17 36 0.31
18 39 0.34
19 11 0.09
20 17 0.15
21 5 0.04
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.32
Consensus pattern (17 bp):
GAAACACGGGAATTTTT
Found at i:25507512 original size:36 final size:36
Alignment explanation
Indices: 25507403--25507682 Score: 203
Period size: 36 Copynumber: 7.4 Consensus size: 36
25507393 AACACGAGGA
* * *
25507403 TTTTTTG-AAACACGAAAATTTATGAAACATGGTCAAC
1 TTTTTTGAAAACACGAAAATTTTTGAAACACGG--AAT
* *
25507440 TTTTTTGAAAACACAAAAATTTTTGAAAGACGGGAAT
1 TTTTTTGAAAACACGAAAATTTTTGAAACAC-GGAAT
25507477 TTTTTTGAAAACACGAAAATTTTTGAAACACGGAAT
1 TTTTTTGAAAACACGAAAATTTTTGAAACACGGAAT
* * *
25507513 TTTTTTGAAAACAAGAAAATTTTTGAAATACGGGA-
1 TTTTTTGAAAACACGAAAATTTTTGAAACACGGAAT
* * *
25507548 -CTTTTGAAAACAAGGAAATTTTTTTGAAAAAACACTGGAA-
1 TTTTTTGAAAAC-ACGAAA-ATTTTTG---AAACAC-GGAAT
* * * *
25507588 --TTTTGAAAGCACGAAGATTTTTGAAACACGAAAA
1 TTTTTTGAAAACACGAAAATTTTTGAAACACGGAAT
* *
25507622 TTTTTTAAAAACACAGAAACATGAAAATTTGTCAAACACGAGAAT
1 TTTTTTGAAAACAC-GAAA-AT-----TTT-TGAAACACG-GAAT
25507667 TTTTTTGAAAACACGA
1 TTTTTTGAAAACACGA
25507683 TAACATCAAA
Statistics
Matches: 196, Mismatches: 27, Indels: 33
0.77 0.11 0.13
Matches are distributed among these distances:
33 3 0.02
34 16 0.08
35 5 0.03
36 53 0.27
37 47 0.24
38 25 0.13
39 16 0.08
40 3 0.02
43 3 0.02
44 10 0.05
45 15 0.08
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.31
Consensus pattern (36 bp):
TTTTTTGAAAACACGAAAATTTTTGAAACACGGAAT
Found at i:25507617 original size:17 final size:18
Alignment explanation
Indices: 25507588--25507626 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
25507578 AACACTGGAA
*
25507588 TTTTGAAAGCACGAAGAT
1 TTTTGAAAGCACGAAAAT
25507606 TTTTGAAA-CACGAAAAT
1 TTTTGAAAGCACGAAAAT
25507623 TTTT
1 TTTT
25507627 TAAAAACACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (18 bp):
TTTTGAAAGCACGAAAAT
Found at i:25507627 original size:18 final size:18
Alignment explanation
Indices: 25507441--25507626 Score: 80
Period size: 18 Copynumber: 10.3 Consensus size: 18
25507431 ATGGTCAACT
* *
25507441 TTTTTGAAAACACAAAAA
1 TTTTTGAAAGCACGAAAA
**
25507459 TTTTTGAAAG-ACGGGAATT
1 TTTTTGAAAGCAC--GAAAA
*
25507478 TTTTTGAAAACACGAAAA
1 TTTTTGAAAGCACGAAAA
**
25507496 TTTTTGAAA-CACGGAATT
1 TTTTTGAAAGCAC-GAAAA
* *
25507514 TTTTTGAAAACAAGAAAA
1 TTTTTGAAAGCACGAAAA
* **
25507532 TTTTTGAAA-TACG-GGA
1 TTTTTGAAAGCACGAAAA
* * * *
25507548 CTTTTGAAAACAAGGAAATT
1 TTTTTGAAAGC-ACGAAA-A
* *
25507568 TTTTTGAAAAAACACTG-GAA
1 TTTTTG--AAAGCAC-GAAAA
*
25507588 -TTTTGAAAGCACGAAGA
1 TTTTTGAAAGCACGAAAA
25507605 TTTTTGAAA-CACGAAAA
1 TTTTTGAAAGCACGAAAA
25507622 TTTTT
1 TTTTT
25507627 TAAAAACACA
Statistics
Matches: 124, Mismatches: 30, Indels: 29
0.68 0.16 0.16
Matches are distributed among these distances:
16 10 0.08
17 26 0.21
18 55 0.44
19 18 0.15
20 7 0.06
21 2 0.02
22 6 0.05
ACGTcount: A:0.42, C:0.09, G:0.16, T:0.33
Consensus pattern (18 bp):
TTTTTGAAAGCACGAAAA
Found at i:25507890 original size:18 final size:16
Alignment explanation
Indices: 25507859--25507904 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 16
25507849 TATTATTATT
25507859 ATTTTGAAACATGAGAA
1 ATTTTGAAACATGA-AA
25507876 ATTTTGAAGACATGAAA
1 ATTTTGAA-ACATGAAA
25507893 ATTTTTGAAACA
1 A-TTTTGAAACA
25507905 CGATTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 14 0.52
18 13 0.48
ACGTcount: A:0.46, C:0.07, G:0.15, T:0.33
Consensus pattern (16 bp):
ATTTTGAAACATGAAA
Found at i:25508723 original size:18 final size:16
Alignment explanation
Indices: 25508692--25508737 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 16
25508682 TATTATTATT
25508692 ATTTTGAAACATGAGAA
1 ATTTTGAAACATGA-AA
25508709 ATTTTGAAGACATGAAA
1 ATTTTGAA-ACATGAAA
25508726 ATTTTTGAAACA
1 A-TTTTGAAACA
25508738 CGATTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 14 0.52
18 13 0.48
ACGTcount: A:0.46, C:0.07, G:0.15, T:0.33
Consensus pattern (16 bp):
ATTTTGAAACATGAAA
Found at i:25509242 original size:833 final size:833
Alignment explanation
Indices: 25507637--25509298 Score: 3324
Period size: 833 Copynumber: 2.0 Consensus size: 833
25507627 TAAAAACACA
25507637 GAAACATGAAAATTTGTCAAACACGAGAATTTTTTTGAAAACACGATAACATCAAAAAAAATATT
1 GAAACATGAAAATTTGTCAAACACGAGAATTTTTTTGAAAACACGATAACATCAAAAAAAATATT
25507702 CGCGAAAGTTTTTTTTTGAAACATGAGAAATTATTTTTTGAAAACACGAAAACACGAACATTTTT
66 CGCGAAAGTTTTTTTTTGAAACATGAGAAATTATTTTTTGAAAACACGAAAACACGAACATTTTT
25507767 CAAACAAGGGAATTTTTGAAAACACGGAAAAATTTTTTTTAAAAAGAAACACGAATATATATTTT
131 CAAACAAGGGAATTTTTGAAAACACGGAAAAATTTTTTTTAAAAAGAAACACGAATATATATTTT
25507832 TGAAACACGGGAAATTTTATTATTATTATTTTGAAACATGAGAAATTTTGAAGACATGAAAATTT
196 TGAAACACGGGAAATTTTATTATTATTATTTTGAAACATGAGAAATTTTGAAGACATGAAAATTT
25507897 TTGAAACACGATTTTTTTTAAAATACCGTATTTAACACGAAATCGATGATATTCACCCCGACATG
261 TTGAAACACGATTTTTTTTAAAATACCGTATTTAACACGAAATCGATGATATTCACCCCGACATG
25507962 GCGATGAAATCGTCGAATTAGTGTCAAACCGATTCAATTTAATATTTAATCGGGATTCTAATAAA
326 GCGATGAAATCGTCGAATTAGTGTCAAACCGATTCAATTTAATATTTAATCGGGATTCTAATAAA
25508027 ACACGAGAATCTTTATTAAAATACGAGGAATTTCAAATATTTTCGATTGTTAGAAGGGCGTCCCG
391 ACACGAGAATCTTTATTAAAATACGAGGAATTTCAAATATTTTCGATTGTTAGAAGGGCGTCCCG
25508092 TATTTAACACGAGCCATCGATATTCACCCAACATAGCGATGAAATCAACGGCTCGATGCTAAACC
456 TATTTAACACGAGCCATCGATATTCACCCAACATAGCGATGAAATCAACGGCTCGATGCTAAACC
25508157 GGCTCGTTGCCTTACGCATTAAAATATATATTTTTATTTTAAACATGCAAATAAAATAACATAAT
521 GGCTCGTTGCCTTACGCATTAAAATATATATTTTTATTTTAAACATGCAAATAAAATAACATAAT
25508222 AATATTTCTAAAAAAACTATAAAAAATGCTAATTTAAATAAAATACCATTTAAATAAATTAAATA
586 AATATTTCTAAAAAAACTATAAAAAATGCTAATTTAAATAAAATACCATTTAAATAAATTAAATA
25508287 AATTAAAATGGATTTAAAAAAAAATTTACCCAAAGCCCAAAGTTGTGGGCTTGAAGGACAGGCCT
651 AATTAAAATGGATTTAAAAAAAAATTTACCCAAAGCCCAAAGTTGTGGGCTTGAAGGACAGGCCT
25508352 TTTTTTTAGGCCTGCTGCGAATTGGGCCTGGGCTGCTTCTGATGGGCCAGATCCGGGTTGGGTCA
716 TTTTTTTAGGCCTGCTGCGAATTGGGCCTGGGCTGCTTCTGATGGGCCAGATCCGGGTTGGGTCA
25508417 AGCGGGTCGGATCTGCTGGTCTCTGGTCTGAAGCTGGGCGCGGGCTTGGTACG
781 AGCGGGTCGGATCTGCTGGTCTCTGGTCTGAAGCTGGGCGCGGGCTTGGTACG
25508470 GAAACATGAAAATTTGTCAAACACGAGAATTTTTTTGAAAACACGATAACATCAAAAAAAATATT
1 GAAACATGAAAATTTGTCAAACACGAGAATTTTTTTGAAAACACGATAACATCAAAAAAAATATT
25508535 CGCGAAAGTTTTTTTTTGAAACATGAGAAATTATTTTTTGAAAACACGAAAACACGAACATTTTT
66 CGCGAAAGTTTTTTTTTGAAACATGAGAAATTATTTTTTGAAAACACGAAAACACGAACATTTTT
25508600 CAAACAAGGGAATTTTTGAAAACACGGAAAAATTTTTTTTAAAAAGAAACACGAATATATATTTT
131 CAAACAAGGGAATTTTTGAAAACACGGAAAAATTTTTTTTAAAAAGAAACACGAATATATATTTT
25508665 TGAAACACGGGAAATTTTATTATTATTATTTTGAAACATGAGAAATTTTGAAGACATGAAAATTT
196 TGAAACACGGGAAATTTTATTATTATTATTTTGAAACATGAGAAATTTTGAAGACATGAAAATTT
25508730 TTGAAACACGATTTTTTTTAAAATACCGTATTTAACACGAAATCGATGATATTCACCCCGACATG
261 TTGAAACACGATTTTTTTTAAAATACCGTATTTAACACGAAATCGATGATATTCACCCCGACATG
25508795 GCGATGAAATCGTCGAATTAGTGTCAAACCGATTCAATTTAATATTTAATCGGGATTCTAATAAA
326 GCGATGAAATCGTCGAATTAGTGTCAAACCGATTCAATTTAATATTTAATCGGGATTCTAATAAA
25508860 ACACGAGAATCTTTATTAAAATACGAGGAATTTCAAATATTTTCGATTGTTAGAAGGGCGTCCCG
391 ACACGAGAATCTTTATTAAAATACGAGGAATTTCAAATATTTTCGATTGTTAGAAGGGCGTCCCG
25508925 TATTTAACACGAGCCATCGATATTCACCCAACATAGCGATGAAATCAACGGCTCGATGCTAAACC
456 TATTTAACACGAGCCATCGATATTCACCCAACATAGCGATGAAATCAACGGCTCGATGCTAAACC
25508990 GGCTCGTTGCCTTACGCATTAAAATATATATTTTTATTTTAAACATGCAAATAAAATAACATAAT
521 GGCTCGTTGCCTTACGCATTAAAATATATATTTTTATTTTAAACATGCAAATAAAATAACATAAT
25509055 AATATTTCTAAAAAAACTATAAAAAATGCTAATTTAAATAAAATACCATTTAAATAAATTAAATA
586 AATATTTCTAAAAAAACTATAAAAAATGCTAATTTAAATAAAATACCATTTAAATAAATTAAATA
25509120 AATTAAAATGGATTTAAAAAAAAATTTACCCAAAGCCCAAAGTTGTGGGCTTGAAGGACAGGCCT
651 AATTAAAATGGATTTAAAAAAAAATTTACCCAAAGCCCAAAGTTGTGGGCTTGAAGGACAGGCCT
25509185 TTTTTTTAGGCCTGCTGCGAATTGGGCCTGGGCTGCTTCTGATGGGCCAGATCCGGGTTGGGTCA
716 TTTTTTTAGGCCTGCTGCGAATTGGGCCTGGGCTGCTTCTGATGGGCCAGATCCGGGTTGGGTCA
25509250 AGCGGGTCGGATCTGCTGGTCTCTGGTCTGAAGCTGGGCGCGGGCTTGG
781 AGCGGGTCGGATCTGCTGGTCTCTGGTCTGAAGCTGGGCGCGGGCTTGG
25509299 ATTGCTGCTG
Statistics
Matches: 829, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
833 829 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (833 bp):
GAAACATGAAAATTTGTCAAACACGAGAATTTTTTTGAAAACACGATAACATCAAAAAAAATATT
CGCGAAAGTTTTTTTTTGAAACATGAGAAATTATTTTTTGAAAACACGAAAACACGAACATTTTT
CAAACAAGGGAATTTTTGAAAACACGGAAAAATTTTTTTTAAAAAGAAACACGAATATATATTTT
TGAAACACGGGAAATTTTATTATTATTATTTTGAAACATGAGAAATTTTGAAGACATGAAAATTT
TTGAAACACGATTTTTTTTAAAATACCGTATTTAACACGAAATCGATGATATTCACCCCGACATG
GCGATGAAATCGTCGAATTAGTGTCAAACCGATTCAATTTAATATTTAATCGGGATTCTAATAAA
ACACGAGAATCTTTATTAAAATACGAGGAATTTCAAATATTTTCGATTGTTAGAAGGGCGTCCCG
TATTTAACACGAGCCATCGATATTCACCCAACATAGCGATGAAATCAACGGCTCGATGCTAAACC
GGCTCGTTGCCTTACGCATTAAAATATATATTTTTATTTTAAACATGCAAATAAAATAACATAAT
AATATTTCTAAAAAAACTATAAAAAATGCTAATTTAAATAAAATACCATTTAAATAAATTAAATA
AATTAAAATGGATTTAAAAAAAAATTTACCCAAAGCCCAAAGTTGTGGGCTTGAAGGACAGGCCT
TTTTTTTAGGCCTGCTGCGAATTGGGCCTGGGCTGCTTCTGATGGGCCAGATCCGGGTTGGGTCA
AGCGGGTCGGATCTGCTGGTCTCTGGTCTGAAGCTGGGCGCGGGCTTGGTACG
Found at i:25509495 original size:12 final size:12
Alignment explanation
Indices: 25509480--25509543 Score: 69
Period size: 11 Copynumber: 5.3 Consensus size: 12
25509470 TTTCCTTTTT
25509480 TCTTTTTCTTTC
1 TCTTTTTCTTTC
25509492 TCTTTTTC-TTC
1 TCTTTTTCTTTC
*
25509503 TCTTTTTTTCTTC
1 TCTTTTTCT-TTC
*
25509516 TCTTTTTTCCTT-
1 TC-TTTTTCTTTC
*
25509528 TCTTTTTCTTCC
1 TCTTTTTCTTTC
25509540 TCTT
1 TCTT
25509544 CTTCGGGCCG
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
11 17 0.40
12 14 0.33
13 7 0.16
14 5 0.12
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (12 bp):
TCTTTTTCTTTC
Found at i:25509515 original size:13 final size:12
Alignment explanation
Indices: 25509466--25509534 Score: 75
Period size: 13 Copynumber: 5.4 Consensus size: 12
25509456 TTTCTTATAT
*
25509466 TTTTTTTCCTTTT
1 TTTTTTT-CTTTC
25509479 TTCTTTTTCTTTC
1 TT-TTTTTCTTTC
*
25509492 TCTTTTTCTTCTC
1 TTTTTTTCTT-TC
25509505 TTTTTTTCTTCTC
1 TTTTTTTCTT-TC
*
25509518 TTTTTTCCTTTC
1 TTTTTTTCTTTC
25509530 TTTTT
1 TTTTT
25509535 CTTCCTCTTC
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
12 15 0.30
13 30 0.60
14 5 0.10
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTTTTCTTTC
Found at i:25509516 original size:24 final size:23
Alignment explanation
Indices: 25509478--25509543 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 23
25509468 TTTTTCCTTT
*
25509478 TTTCTTTTTCTTTCTCTTTTTCTTC
1 TTTCTTTTTC-TTCTCTTTTT-TCC
25509503 TCTT-TTTTTCTTCTCTTTTTTCC
1 T-TTCTTTTTCTTCTCTTTTTTCC
25509526 TTTCTTTTTCTTCCTCTT
1 TTTCTTTTTCTT-CTCTT
25509544 CTTCGGGCCG
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
22 2 0.05
23 11 0.30
24 15 0.41
25 7 0.19
26 2 0.05
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (23 bp):
TTTCTTTTTCTTCTCTTTTTTCC
Found at i:25509694 original size:18 final size:16
Alignment explanation
Indices: 25509663--25509708 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 16
25509653 TATTATTATT
25509663 ATTTTGAAACATGAGAA
1 ATTTTGAAACATGA-AA
25509680 ATTTTGAAGACATGAAA
1 ATTTTGAA-ACATGAAA
25509697 ATTTTTGAAACA
1 A-TTTTGAAACA
25509709 CGATTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 14 0.52
18 13 0.48
ACGTcount: A:0.46, C:0.07, G:0.15, T:0.33
Consensus pattern (16 bp):
ATTTTGAAACATGAAA
Found at i:25510463 original size:19 final size:18
Alignment explanation
Indices: 25510437--25510483 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 18
25510427 CTTTCTTATA
25510437 TTTTTTTCCCTTTTTTCT
1 TTTTTTTCCCTTTTTTCT
*
25510455 TTTTCTTTCTCTTTTTTCCT
1 TTTT-TTTCCCTTTTTT-CT
25510475 TTCTTTTTC
1 TT-TTTTTC
25510484 TTCCTCTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 4 0.16
19 11 0.44
20 8 0.32
21 2 0.08
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTTTTCCCTTTTTTCT
Found at i:25510471 original size:14 final size:13
Alignment explanation
Indices: 25510437--25510494 Score: 55
Period size: 14 Copynumber: 4.2 Consensus size: 13
25510427 CTTTCTTATA
25510437 TTTTTTTCCCTTT-
1 TTTTTTT-CCTTTC
*
25510450 TTTCTTTTTCTTTC
1 TTT-TTTTCCTTTC
25510464 TCTTTTTTCCTTTC
1 T-TTTTTTCCTTTC
25510478 TTTTTCTTCCTCTTC
1 TTTTT-TTCCT-TTC
25510493 TT
1 TT
25510495 CGGGCCGAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
13 11 0.29
14 20 0.53
15 7 0.18
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTTTTCCTTTC
Found at i:25510484 original size:971 final size:972
Alignment explanation
Indices: 25508590--25510491 Score: 3641
Period size: 971 Copynumber: 2.0 Consensus size: 972
25508580 ACGAAAACAC
*
25508590 GAACATTTTTCAAACAAGGGAATTTTTGAAAACACGGAAAAATTTTTTTTAAAAAGAAACACGAA
1 GAACATTTTTCAAACAAGGGAATTTTTGAAAACACGGAAAAAATTTTTTTAAAAAGAAACACGAA
25508655 TATATATTTTTGAAACACGGGAAATTTTATTATTATTATTTTGAAACATGAGAAATTTTGAAGAC
66 TATATATTTTTGAAACACGGGAAATTTTATTATTATTATTTTGAAACATGAGAAATTTTGAAGAC
25508720 ATGAAAATTTTTGAAACACGATTTTTTTTAAAATACCGTATTTAACACGAAATCGATGATATTCA
131 ATGAAAATTTTTGAAACACGATTTTTTTTAAAATACCGTATTTAACACGAAATCGATGATATTCA
25508785 CCCCGACATGGCGATGAAATCGTCGAATTAGTGTCAAACCGATTCAATTTAATATTTAATCGGGA
196 CCCCGACATGGCGATGAAATCGTCGAATTAGTGTCAAACCGATTCAATTTAATATTTAATCGGGA
25508850 TTCTAATAAAACACGAGAATCTTTATTAAAATACGAGGAATTTCAAATATTTTCGATTGTTAGAA
261 TTCTAATAAAACACGAGAATCTTTATTAAAATACGAGGAATTTCAAATATTTTCGATTGTTAGAA
25508915 GGGCGTCCCGTATTTAACACGAGCCATCGATATTCACCCAACATAGCGATGAAATCAACGGCTCG
326 GGGCGTCCCGTATTTAACACGAGCCATCGATATTCACCCAACATAGCGATGAAATCAACGGCTCG
25508980 ATGCTAAACCGGCTCGTTGCCTTACGCATTAAAATATATATTTTTATTTTAAACATGCAAATAAA
391 ATGCTAAACCGGCTCGTTGCCTTACGCATTAAAATATATATTTTTATTTTAAACATGCAAATAAA
25509045 ATAACATAATAATATTTCTAAAAAAACTATAAAAAATGCTAATTTAAATAAAATACCATTTAAAT
456 ATAACATAATAATATTTCTAAAAAAACTATAAAAAATGCTAATTTAAATAAAATACCATTTAAAT
25509110 AAATTAAATAAATTAAAATGGATTTAAAAAAAAATTTACCCAAAGCCCAAAGTTGTGGGCTTGAA
521 AAATTAAATAAATTAAAATGGATTTAAAAAAAAATTTACCCAAAGCCCAAAGTTGTGGGCTTGAA
25509175 GGACAGGCCTTTTTTTTAGGCCTGCTGCGAATTGGGCCTGGGCTGCTTCTGATGGGCCAGATCCG
586 GGACAGGCCTTTTTTTTAGGCCTGCTGCGAATTGGGCCTGGGCTGCTTCTGATGGGCCAGATCCG
25509240 GGTTGGGTCAAGCGGGTCGGATCTGCTGGTCTCTGGTCTGAAGCTGGGCGCGGGCTTGGATTGCT
651 GGTTGGGTCAAGCGGGTCGGATCTGCTGGTCTCTGGTCTGAAGCTGGGCGCGGGCTTGGATTGCT
25509305 GCTGTGCTACTGGGCCTACGTTGGGTTGCGCTACTGGGCTGGCGCAAAGGGCCTGCTACAGGCCT
716 GCTGTGCTACTGGGCCTACGTTGGGTTGCGCTACTGGGCTGGCGCAAAGGGCCTGCTACAGGCCT
*
25509370 GCTATTTTATTTTTTTCTGTTCTGCTGCTTGGGCTGCCACTGCTATTGGGCCTGTTGACCGGCCT
781 GCTATTTTATTTTTTTCTGTTCTGCTGCTTGGGCTGCCACTGCTATTGGGCCTATTGACCGGCCT
*
25509435 GCTACAATGTGGCCTGCTGTCTTTCTTATATTTTTTTTCCTTTTTTCTTTTTCTTTCTCTTTTTC
846 GCTACAATGTGGCCTGCTGTCTTTCTTATATTTTTTTCCCTTTTTTCTTTTTCTTTCTCTTTTTC
*
25509500 TTCTCTTTTTTTCTT-CTCTTTTTTCCTTTCTTTTTCTTCCTCTTCTTCGGGCCGAATCTTA
911 TCCTCTTTTTTTCTTCCTCTTTTTTCCTTTCTTTTTCTTCCTCTTCTTCGGGCCGAATCTTA
25509561 GAACATTTTTCAAACAAGGGAATTTTTGAAAACACGGAAAAAATTTTTTTAAAAAGAAACACGAA
1 GAACATTTTTCAAACAAGGGAATTTTTGAAAACACGGAAAAAATTTTTTTAAAAAGAAACACGAA
25509626 TATATATTTTTGAAACACGGGAAATTTTATTATTATTATTTTGAAACATGAGAAATTTTGAAGAC
66 TATATATTTTTGAAACACGGGAAATTTTATTATTATTATTTTGAAACATGAGAAATTTTGAAGAC
25509691 ATGAAAATTTTTGAAACACGATTTTTTTTAAAATACCGTATTTAACACGAAATCGATGATATTCA
131 ATGAAAATTTTTGAAACACGATTTTTTTTAAAATACCGTATTTAACACGAAATCGATGATATTCA
25509756 CCCCGACATGGCGATGAAATCGTCGAATTAGTGTCAAACCGATTCAATTTAATATTTAATCGGGA
196 CCCCGACATGGCGATGAAATCGTCGAATTAGTGTCAAACCGATTCAATTTAATATTTAATCGGGA
* * *
25509821 TTCTAATAAAACATGAGAATTTTTATTAAAATACGAGGAATTTCGAATATTTTCGATTGTTAGAA
261 TTCTAATAAAACACGAGAATCTTTATTAAAATACGAGGAATTTCAAATATTTTCGATTGTTAGAA
25509886 GGGCGTCCCGTATTTAACACGAGCCATCGATATTCACCCAACATAGCGATGAAATCAACGGCTCG
326 GGGCGTCCCGTATTTAACACGAGCCATCGATATTCACCCAACATAGCGATGAAATCAACGGCTCG
25509951 ATGCTAAACCGGCTCGTTGCCTTACGCATTAAAATATATATTTTTATTTTAAACATGCAAATAAA
391 ATGCTAAACCGGCTCGTTGCCTTACGCATTAAAATATATATTTTTATTTTAAACATGCAAATAAA
*
25510016 ATAACATAATAATATTTCT-AAAAAACTATTAAAAAATGCTAATTTAAATAAAATACTATTTAAA
456 ATAACATAATAATATTTCTAAAAAAACTA-TAAAAAATGCTAATTTAAATAAAATACCATTTAAA
**
25510080 TAAATTAAATAAATTAAAATGGATTTTTAAAAAAATTTACCCAAAGCCCAAAGTTGTGGGCTTGA
520 TAAATTAAATAAATTAAAATGGATTTAAAAAAAAATTTACCCAAAGCCCAAAGTTGTGGGCTTGA
25510145 AGGACAGGCCCTTTTTTTTAGGCCTGCTGCGAATTGGGCCTGGGCTGCTTCTGATGGGCCAGATC
585 AGGACAGG-CCTTTTTTTTAGGCCTGCTGCGAATTGGGCCTGGGCTGCTTCTGATGGGCCAGATC
25510210 CGGGTTGGGTCAAGCGGGTCGGATCTGCTGGTCTCTGGTCTGAAGCTGGGCGCGGGCTTGGATTG
649 CGGGTTGGGTCAAGCGGGTCGGATCTGCTGGTCTCTGGTCTGAAGCTGGGCGCGGGCTTGGATTG
25510275 CTGCTGTGCTACTGGGCCTACGTTGGGTTGCGCTACTGGGCTGGCGCAAAGGGCCTGCTACAGGC
714 CTGCTGTGCTACTGGGCCTACGTTGGGTTGCGCTACTGGGCTGGCGCAAAGGGCCTGCTACAGGC
*
25510340 CTGCTATTTTATTTTTTTTTGTTCTGCTGCTTGGGCTGCCACTGCTATTGGGCCTATTGACCGGC
779 CTGCTATTTTATTTTTTTCTGTTCTGCTGCTTGGGCTGCCACTGCTATTGGGCCTATTGACCGGC
*
25510405 CTGCTACAATGTGGCCTGTTGTCTTTCTTATATTTTTTTCCCTTTTTTCTTTTTCTTTCTCTTTT
844 CTGCTACAATGTGGCCTGCTGTCTTTCTTATATTTTTTTCCCTTTTTTCTTTTTCTTTCTCTTTT
25510470 T-TCCT-TTCTTTTTCTTCCTCTT
909 TCTCCTCTT-TTTTTCTTCCTCTT
25510492 CTTCGGGCCG
Statistics
Matches: 915, Mismatches: 12, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
970 11 0.01
971 586 0.64
972 318 0.35
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (972 bp):
GAACATTTTTCAAACAAGGGAATTTTTGAAAACACGGAAAAAATTTTTTTAAAAAGAAACACGAA
TATATATTTTTGAAACACGGGAAATTTTATTATTATTATTTTGAAACATGAGAAATTTTGAAGAC
ATGAAAATTTTTGAAACACGATTTTTTTTAAAATACCGTATTTAACACGAAATCGATGATATTCA
CCCCGACATGGCGATGAAATCGTCGAATTAGTGTCAAACCGATTCAATTTAATATTTAATCGGGA
TTCTAATAAAACACGAGAATCTTTATTAAAATACGAGGAATTTCAAATATTTTCGATTGTTAGAA
GGGCGTCCCGTATTTAACACGAGCCATCGATATTCACCCAACATAGCGATGAAATCAACGGCTCG
ATGCTAAACCGGCTCGTTGCCTTACGCATTAAAATATATATTTTTATTTTAAACATGCAAATAAA
ATAACATAATAATATTTCTAAAAAAACTATAAAAAATGCTAATTTAAATAAAATACCATTTAAAT
AAATTAAATAAATTAAAATGGATTTAAAAAAAAATTTACCCAAAGCCCAAAGTTGTGGGCTTGAA
GGACAGGCCTTTTTTTTAGGCCTGCTGCGAATTGGGCCTGGGCTGCTTCTGATGGGCCAGATCCG
GGTTGGGTCAAGCGGGTCGGATCTGCTGGTCTCTGGTCTGAAGCTGGGCGCGGGCTTGGATTGCT
GCTGTGCTACTGGGCCTACGTTGGGTTGCGCTACTGGGCTGGCGCAAAGGGCCTGCTACAGGCCT
GCTATTTTATTTTTTTCTGTTCTGCTGCTTGGGCTGCCACTGCTATTGGGCCTATTGACCGGCCT
GCTACAATGTGGCCTGCTGTCTTTCTTATATTTTTTTCCCTTTTTTCTTTTTCTTTCTCTTTTTC
TCCTCTTTTTTTCTTCCTCTTTTTTCCTTTCTTTTTCTTCCTCTTCTTCGGGCCGAATCTTA
Found at i:25510607 original size:15 final size:14
Alignment explanation
Indices: 25510581--25510611 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
25510571 TTCTCTTCCC
25510581 CTCTTCCTTTTCTT
1 CTCTTCCTTTTCTT
25510595 CTCTTCTCTTTTCTT
1 CTCTTC-CTTTTCTT
25510610 CT
1 CT
25510612 TTATTAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (14 bp):
CTCTTCCTTTTCTT
Found at i:25511233 original size:19 final size:18
Alignment explanation
Indices: 25511207--25511253 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 18
25511197 CTTTCTTATA
25511207 TTTTTTTCCCTTTTTTCT
1 TTTTTTTCCCTTTTTTCT
*
25511225 TTTTCTTTCTCTTTTTTCCT
1 TTTT-TTTCCCTTTTTT-CT
25511245 TTCTTTTTC
1 TT-TTTTTC
25511254 TTCCTCTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 4 0.16
19 11 0.44
20 8 0.32
21 2 0.08
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTTTTCCCTTTTTTCT
Found at i:25511241 original size:14 final size:13
Alignment explanation
Indices: 25511207--25511264 Score: 55
Period size: 14 Copynumber: 4.2 Consensus size: 13
25511197 CTTTCTTATA
25511207 TTTTTTTCCCTTT-
1 TTTTTTT-CCTTTC
*
25511220 TTTCTTTTTCTTTC
1 TTT-TTTTCCTTTC
25511234 TCTTTTTTCCTTTC
1 T-TTTTTTCCTTTC
25511248 TTTTTCTTCCTCTTC
1 TTTTT-TTCCT-TTC
25511263 TT
1 TT
25511265 CGGGCCGAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
13 11 0.29
14 20 0.53
15 7 0.18
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTTTTCCTTTC
Found at i:25511324 original size:770 final size:769
Alignment explanation
Indices: 25509842--25511379 Score: 2977
Period size: 770 Copynumber: 2.0 Consensus size: 769
25509832 CATGAGAATT
*
25509842 TTTATTAAAATACGAGGAATTTCGAATATTTTCGATTGTTAGAAGGGCGTCCCGTATTTAACACG
1 TTTATTAAAATACGAGGAATTTCAAATATTTTCGATTGTTAGAAGGGCGTCCCGTATTTAACACG
25509907 AGCCATCGATATTCACCCAACATAGCGATGAAATCAACGGCTCGATGCTAAACCGGCTCGTTGCC
66 AGCCATCGATATTCACCCAACATAGCGATGAAATCAACGGCTCGATGCTAAACCGGCTCGTTGCC
25509972 TTACGCATTAAAATATATATTTTTATTTTAAACATGCAAATAAAATAACATAATAATATTTCTAA
131 TTACGCATTAAAATATATATTTTTATTTTAAACATGCAAATAAAATAACATAATAATATTTCTAA
25510037 AAAACTATTAAAAAATGCTAATTTAAATAAAATACTATTTAAATAAATTAAATAAATTAAAATGG
196 AAAACTATTAAAAAATGCTAATTTAAATAAAATACTATTTAAATAAATTAAATAAATTAAAATGG
25510102 ATTTTTAAAAAAATTTACCCAAAGCCCAAAGTTGTGGGCTTGAAGGACAGGCCCTTTTTTTTAGG
261 ATTTTTAAAAAAATTTACCCAAAGCCCAAAGTTGTGGGCTTGAAGGACAGGCCCTTTTTTTTAGG
25510167 CCTGCTGCGAATTGGGCCTGGGCTGCTTCTGATGGGCCAGATCCGGGTTGGGTCAAGCGGGTCGG
326 CCTGCTGCGAATTGGGCCTGGGCTGCTTCTGATGGGCCAGATCCGGGTTGGGTCAAGCGGGTCGG
* *
25510232 ATCTGCTGGTCTCTGGTCTGAAGCTGGGCGCGGGCTTGGATTGCTGCTGTGCTACTGGGCCTACG
391 ATCTGCTGGTCTCTGGTCTGAAGCTGGGCGCGGGCTTGGACTGCTACTGTGCTACTGGGCCTACG
* * *
25510297 TTGGGTTGCGCTACTGGGCTGGCGCAAAGGGCCTGCTACAGGCCTGCTATTTTATTTTTTTTTGT
456 TTGGGCTGCGCTACTGGGCTGGCGCAAAGGGCCTGCTACAGGCCTACTATTTTATTTTTTTCTGT
25510362 TCTGCTGCTTGGGCTGCCACTGCTATTGGGCCTATTGACCGGCCTGCTACAATGTGGCCTGTTGT
521 TCTGCTGCTTGGGCTGCCACTGCTATTGGGCCTATTGACCGGCCTGCTACAATGTGGCCTGTTGT
25510427 CTTTCTTATATTTTTTTCCCTTTTTTCTTTTTCTTTCTCTTTTTTCCTTTCTTTTTCTTCCTCTT
586 CTTTCTTATATTTTTTTCCCTTTTTTCTTTTTCTTTCTCTTTTTTCCTTTCTTTTTCTTCCTCTT
*
25510492 CTTCGGGCCGAATCTTAGCCCCACGCAGCCTCCGTTCTTGCACCGATCTCCTCCGTCCTCGGTGG
651 CTTCGGGCCGAATCTTAGCCCCACGCAGCCTCCGTTCTTGCACCGATCTCCTCCGCCCTCGGTGG
*
25510557 CTAAGGACGGGCTCTTCTCTTCCCCTCTTCCTTTTCTTCTCTTCTCTTTTCTTC
716 CTAAGGACGGGCTCTTCTCTTCCCCTATTCCTTTTCTTCTCTTCTCTTTTCTTC
25510611 TTTATTAAAATACGAGGAATTTCAAATATTTTCGATTGTTAGAAGGGCGTCCCGTATTTAACACG
1 TTTATTAAAATACGAGGAATTTCAAATATTTTCGATTGTTAGAAGGGCGTCCCGTATTTAACACG
25510676 AGCCATCGATATTCACCCAACATAGCGATGAAATCAACGGCTCGATGCTAAACCGGCTCGTTGCC
66 AGCCATCGATATTCACCCAACATAGCGATGAAATCAACGGCTCGATGCTAAACCGGCTCGTTGCC
25510741 TTACGCATTAAAATATATATTTTTATTTTAAACATGCAAATAAAATAACATAATAATATTTCTAA
131 TTACGCATTAAAATATATATTTTTATTTTAAACATGCAAATAAAATAACATAATAATATTTCT-A
25510806 AAAAACTATTAAAAAATGCTAATTTAAATAAAATACTATTTAAATAAATTAAATAAATTAAAATG
195 AAAAACTATTAAAAAATGCTAATTTAAATAAAATACTATTTAAATAAATTAAATAAATTAAAATG
25510871 GATTTTTAAAAAAATTTACCCAAAGCCCAAAGTTGTGGGCTTGAAGGACAGGCCCTTTTTTTTAG
260 GATTTTTAAAAAAATTTACCCAAAGCCCAAAGTTGTGGGCTTGAAGGACAGGCCCTTTTTTTTAG
25510936 GCCTGCTGCGAATTGGGCCTGGGCTGCTTCTGATGGGCCAGATCCGGGTTGGGTCAAGCGGGTCG
325 GCCTGCTGCGAATTGGGCCTGGGCTGCTTCTGATGGGCCAGATCCGGGTTGGGTCAAGCGGGTCG
*
25511001 GATCTGCTGGTCTCTGGTCTGAAGCTGGGCGCGGGCTTGGACTGCTACTGTGCTACTGGGCCTGC
390 GATCTGCTGGTCTCTGGTCTGAAGCTGGGCGCGGGCTTGGACTGCTACTGTGCTACTGGGCCTAC
25511066 GTTGGGCTGCGCTACTGGGCTGGCGCAAAGGGCCTGCTACAGGCCTACTATTTTATTTTTTTCTG
455 GTTGGGCTGCGCTACTGGGCTGGCGCAAAGGGCCTGCTACAGGCCTACTATTTTATTTTTTTCTG
25511131 TTCTGCTGCTTGGGCTGCCACTGCTATTGGGCCTATTGACCGGCCTGCTACAATGTGGCCTGTTG
520 TTCTGCTGCTTGGGCTGCCACTGCTATTGGGCCTATTGACCGGCCTGCTACAATGTGGCCTGTTG
25511196 TCTTTCTTATATTTTTTTCCCTTTTTTCTTTTTCTTTCTCTTTTTTCCTTTCTTTTTCTTCCTCT
585 TCTTTCTTATATTTTTTTCCCTTTTTTCTTTTTCTTTCTCTTTTTTCCTTTCTTTTTCTTCCTCT
*
25511261 TCTTCGGGCCGAATCTTAGCCCCACGCAGCCTCCGTTCTTGCGCCGATCTCCTCCGCCCTCGGTG
650 TCTTCGGGCCGAATCTTAGCCCCACGCAGCCTCCGTTCTTGCACCGATCTCCTCCGCCCTCGGTG
25511326 GCTAAGGACGGGCTCTTCTCTTCCCCTATTCCTTTTCTTCTCTTCTCTTTTCTT
715 GCTAAGGACGGGCTCTTCTCTTCCCCTATTCCTTTTCTTCTCTTCTCTTTTCTT
25511380 TATTTGATTG
Statistics
Matches: 758, Mismatches: 10, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
769 192 0.25
770 566 0.75
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (769 bp):
TTTATTAAAATACGAGGAATTTCAAATATTTTCGATTGTTAGAAGGGCGTCCCGTATTTAACACG
AGCCATCGATATTCACCCAACATAGCGATGAAATCAACGGCTCGATGCTAAACCGGCTCGTTGCC
TTACGCATTAAAATATATATTTTTATTTTAAACATGCAAATAAAATAACATAATAATATTTCTAA
AAAACTATTAAAAAATGCTAATTTAAATAAAATACTATTTAAATAAATTAAATAAATTAAAATGG
ATTTTTAAAAAAATTTACCCAAAGCCCAAAGTTGTGGGCTTGAAGGACAGGCCCTTTTTTTTAGG
CCTGCTGCGAATTGGGCCTGGGCTGCTTCTGATGGGCCAGATCCGGGTTGGGTCAAGCGGGTCGG
ATCTGCTGGTCTCTGGTCTGAAGCTGGGCGCGGGCTTGGACTGCTACTGTGCTACTGGGCCTACG
TTGGGCTGCGCTACTGGGCTGGCGCAAAGGGCCTGCTACAGGCCTACTATTTTATTTTTTTCTGT
TCTGCTGCTTGGGCTGCCACTGCTATTGGGCCTATTGACCGGCCTGCTACAATGTGGCCTGTTGT
CTTTCTTATATTTTTTTCCCTTTTTTCTTTTTCTTTCTCTTTTTTCCTTTCTTTTTCTTCCTCTT
CTTCGGGCCGAATCTTAGCCCCACGCAGCCTCCGTTCTTGCACCGATCTCCTCCGCCCTCGGTGG
CTAAGGACGGGCTCTTCTCTTCCCCTATTCCTTTTCTTCTCTTCTCTTTTCTTC
Found at i:25511840 original size:12 final size:12
Alignment explanation
Indices: 25511825--25511888 Score: 69
Period size: 11 Copynumber: 5.3 Consensus size: 12
25511815 TTTCCTTTTT
25511825 TCTTTTTCTTTC
1 TCTTTTTCTTTC
25511837 TCTTTTTC-TTC
1 TCTTTTTCTTTC
*
25511848 TCTTTTTTTCTTC
1 TCTTTTTCT-TTC
*
25511861 TCTTTTTTCCTT-
1 TC-TTTTTCTTTC
*
25511873 TCTTTTTCTTCC
1 TCTTTTTCTTTC
25511885 TCTT
1 TCTT
25511889 CTTCGGGCCG
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
11 17 0.40
12 14 0.33
13 7 0.16
14 5 0.12
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (12 bp):
TCTTTTTCTTTC
Found at i:25511860 original size:13 final size:12
Alignment explanation
Indices: 25511811--25511879 Score: 75
Period size: 13 Copynumber: 5.4 Consensus size: 12
25511801 TTTCTTATAT
*
25511811 TTTTTTTCCTTTT
1 TTTTTTT-CTTTC
25511824 TTCTTTTTCTTTC
1 TT-TTTTTCTTTC
*
25511837 TCTTTTTCTTCTC
1 TTTTTTTCTT-TC
25511850 TTTTTTTCTTCTC
1 TTTTTTTCTT-TC
*
25511863 TTTTTTCCTTTC
1 TTTTTTTCTTTC
25511875 TTTTT
1 TTTTT
25511880 CTTCCTCTTC
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
12 15 0.30
13 30 0.60
14 5 0.10
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTTTTCTTTC
Found at i:25511861 original size:24 final size:23
Alignment explanation
Indices: 25511823--25511888 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 23
25511813 TTTTTCCTTT
*
25511823 TTTCTTTTTCTTTCTCTTTTTCTTC
1 TTTCTTTTTC-TTCTCTTTTT-TCC
25511848 TCTT-TTTTTCTTCTCTTTTTTCC
1 T-TTCTTTTTCTTCTCTTTTTTCC
25511871 TTTCTTTTTCTTCCTCTT
1 TTTCTTTTTCTT-CTCTT
25511889 CTTCGGGCCG
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
22 2 0.05
23 11 0.30
24 15 0.41
25 7 0.19
26 2 0.05
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (23 bp):
TTTCTTTTTCTTCTCTTTTTTCC
Found at i:25511997 original size:14 final size:15
Alignment explanation
Indices: 25511978--25512006 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
25511968 TTCTCTTCCC
25511978 CTCTTC-CTTTTCTT
1 CTCTTCTCTTTTCTT
25511992 CTCTTCTCTTTTCTT
1 CTCTTCTCTTTTCTT
25512007 TATTTGATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (15 bp):
CTCTTCTCTTTTCTT
Found at i:25512364 original size:21 final size:21
Alignment explanation
Indices: 25512338--25512379 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
25512328 TGCGGTGCAC
25512338 GCCCGGATGCTGGTTGGGGGT
1 GCCCGGATGCTGGTTGGGGGT
25512359 GCCCGGATGCTGGTTGGGGGT
1 GCCCGGATGCTGGTTGGGGGT
25512380 AGTCTTGTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.05, C:0.19, G:0.52, T:0.24
Consensus pattern (21 bp):
GCCCGGATGCTGGTTGGGGGT
Found at i:25512482 original size:29 final size:30
Alignment explanation
Indices: 25512441--25512621 Score: 173
Period size: 29 Copynumber: 6.2 Consensus size: 30
25512431 GGCAAAAACA
*
25512441 TAATTTTAGGAAAA-TAT-GGGGCTAAAATG
1 TAATTTTA-GAAAAGTTTAGGGGCTAAAATG
* **
25512470 TAATTTATAG-AAATTTTAGGGGCCCAAATG
1 TAATTT-TAGAAAAGTTTAGGGGCTAAAATG
*
25512500 CAA-TTTAGAAAAGTTTAGGGGC-AGAAATG
1 TAATTTTAGAAAAGTTTAGGGGCTA-AAATG
* *
25512529 TAATTTT-GAGAAAGTTTAGGGGGTGAAATG
1 TAATTTTAGA-AAAGTTTAGGGGCTAAAATG
* *
25512559 TAATTTT-GAAAAGTTTA-GGGTTGAAATG
1 TAATTTTAGAAAAGTTTAGGGGCTAAAATG
*
25512587 TAA-TTTAGAAAAGTTTAGGGGCCAAAATG
1 TAATTTTAGAAAAGTTTAGGGGCTAAAATG
25512616 TAATTT
1 TAATTT
25512622 ATGTTTTTTT
Statistics
Matches: 128, Mismatches: 13, Indels: 21
0.79 0.08 0.13
Matches are distributed among these distances:
27 3 0.02
28 29 0.23
29 51 0.40
30 45 0.35
ACGTcount: A:0.38, C:0.04, G:0.25, T:0.33
Consensus pattern (30 bp):
TAATTTTAGAAAAGTTTAGGGGCTAAAATG
Found at i:25512509 original size:28 final size:29
Alignment explanation
Indices: 25512465--25512622 Score: 183
Period size: 29 Copynumber: 5.4 Consensus size: 29
25512455 TATGGGGCTA
* * *
25512465 AAATGTAATTTATAGAAATTTTAGGGGCCC
1 AAATGTAATTTAGA-AAAGTTTAGGGGCCG
* *
25512495 AAATGCAATTTAGAAAAGTTTAGGGGCAG
1 AAATGTAATTTAGAAAAGTTTAGGGGCCG
* **
25512524 AAATGTAATTTTGAGAAAGTTTAGGGGGTG
1 AAATGTAATTTAGA-AAAGTTTAGGGGCCG
* **
25512554 AAATGTAATTTTGAAAAGTTTA-GGGTTG
1 AAATGTAATTTAGAAAAGTTTAGGGGCCG
*
25512582 AAATGTAATTTAGAAAAGTTTAGGGGCCA
1 AAATGTAATTTAGAAAAGTTTAGGGGCCG
25512611 AAATGTAATTTA
1 AAATGTAATTTA
25512623 TGTTTTTTTG
Statistics
Matches: 112, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
28 26 0.23
29 47 0.42
30 39 0.35
ACGTcount: A:0.39, C:0.04, G:0.25, T:0.32
Consensus pattern (29 bp):
AAATGTAATTTAGAAAAGTTTAGGGGCCG
Found at i:25512521 original size:59 final size:59
Alignment explanation
Indices: 25512458--25512622 Score: 194
Period size: 59 Copynumber: 2.8 Consensus size: 59
25512448 AGGAAAATAT
* * *
25512458 GGGGCTAAAATGTAATTTATAGAAATTTTAGGGGCCCAAATGCAATTTAGAAAAGTTTA
1 GGGGCTAAAATGTAATTTATAGAAAGTTTAGGGGCCAAAATGTAATTTAGAAAAGTTTA
*** *
25512517 GGGGC-AGAAATGTAATTT-TGAGAAAGTTTAGGGGGTGAAATGTAATTTTGAAAAGTTTA
1 GGGGCTA-AAATGTAATTTAT-AGAAAGTTTAGGGGCCAAAATGTAATTTAGAAAAGTTTA
* * *
25512576 -GGGTTGAAATGTAATTTAGA-AAAGTTTAGGGGCCAAAATGTAATTTA
1 GGGGCTAAAATGTAATTTATAGAAAGTTTAGGGGCCAAAATGTAATTTA
25512623 TGTTTTTTTG
Statistics
Matches: 89, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
57 23 0.26
58 17 0.19
59 49 0.55
ACGTcount: A:0.38, C:0.05, G:0.26, T:0.32
Consensus pattern (59 bp):
GGGGCTAAAATGTAATTTATAGAAAGTTTAGGGGCCAAAATGTAATTTAGAAAAGTTTA
Found at i:25517911 original size:457 final size:457
Alignment explanation
Indices: 25517213--25518091 Score: 1758
Period size: 457 Copynumber: 1.9 Consensus size: 457
25517203 AACACAAAGC
25517213 ATCAAGAGCATAAGCTCTCGGTTAACAGGCAGAAAAAAGAAAAAGAAAGAACAATGGCAGCAGCT
1 ATCAAGAGCATAAGCTCTCGGTTAACAGGCAGAAAAAAGAAAAAGAAAGAACAATGGCAGCAGCT
25517278 CTTAGAAAAAGAACAAAACAGAGAACAAAGGAGGAAGAAACAAAAATAATTTACTTGCTCACAAA
66 CTTAGAAAAAGAACAAAACAGAGAACAAAGGAGGAAGAAACAAAAATAATTTACTTGCTCACAAA
25517343 CGTGCAGCAAGGAAGCAATCTAAGTTTCACAACTGATATGCTTAATTTTTCAATAAGAAAAACAA
131 CGTGCAGCAAGGAAGCAATCTAAGTTTCACAACTGATATGCTTAATTTTTCAATAAGAAAAACAA
25517408 TACATTTATAGCCAACTACATCAGTTATTACTACCTAATACCACTAAGTAGCCTAGTAACTTTAA
196 TACATTTATAGCCAACTACATCAGTTATTACTACCTAATACCACTAAGTAGCCTAGTAACTTTAA
25517473 AAACATTGCTTGTACACATGGATAAGCTGACTTATCAGCTCAACCAACCCATCAAAACATCAACA
261 AAACATTGCTTGTACACATGGATAAGCTGACTTATCAGCTCAACCAACCCATCAAAACATCAACA
25517538 TCAAAGTTCATTCTCAACCAAACTAAATTACAGAATCATCATAGTACCATGCATTTTAACAAAAA
326 TCAAAGTTCATTCTCAACCAAACTAAATTACAGAATCATCATAGTACCATGCATTTTAACAAAAA
25517603 CATAATAGCAGCATGGTTGGCCATTTTTAACACTCCTCCTTGGACTCCATGCTGCAATACCAGTC
391 CATAATAGCAGCATGGTTGGCCATTTTTAACACTCCTCCTTGGACTCCATGCTGCAATACCAGTC
25517668 AT
456 AT
25517670 ATCAAGAGCATAAGCTCTCGGTTAACAGGCAGAAAAAAGAAAAAGAAAGAACAATGGCAGCAGCT
1 ATCAAGAGCATAAGCTCTCGGTTAACAGGCAGAAAAAAGAAAAAGAAAGAACAATGGCAGCAGCT
25517735 CTTAGAAAAAGAACAAAACAGAGAACAAAGGAGGAAGAAACAAAAATAATTTACTTGCTCACAAA
66 CTTAGAAAAAGAACAAAACAGAGAACAAAGGAGGAAGAAACAAAAATAATTTACTTGCTCACAAA
25517800 CGTGCAGCAAGGAAGCAATCTAAGTTTCACAACTGATATGCTTAATTTTTCAATAAGAAAAACAA
131 CGTGCAGCAAGGAAGCAATCTAAGTTTCACAACTGATATGCTTAATTTTTCAATAAGAAAAACAA
25517865 TACATTTATAGCCAACTACATCAGTTATTACTACCTAATACCACTAAGTAGCCTAGTAACTTTAA
196 TACATTTATAGCCAACTACATCAGTTATTACTACCTAATACCACTAAGTAGCCTAGTAACTTTAA
25517930 AAACATTGCTTGTACACATGGATAAGCTGACTTATCAGCTCAACCAACCCATCAAAACATCAACA
261 AAACATTGCTTGTACACATGGATAAGCTGACTTATCAGCTCAACCAACCCATCAAAACATCAACA
25517995 TCAAAGTTCATTCTCAACCAAACTAAATTACAGAATCATCATAGTACCATGCATTTTAACAAAAA
326 TCAAAGTTCATTCTCAACCAAACTAAATTACAGAATCATCATAGTACCATGCATTTTAACAAAAA
25518060 CATAATAGCAGCATGGTTGGCCATTTTTAACA
391 CATAATAGCAGCATGGTTGGCCATTTTTAACA
25518092 AGACTTCATT
Statistics
Matches: 422, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
457 422 1.00
ACGTcount: A:0.43, C:0.21, G:0.14, T:0.23
Consensus pattern (457 bp):
ATCAAGAGCATAAGCTCTCGGTTAACAGGCAGAAAAAAGAAAAAGAAAGAACAATGGCAGCAGCT
CTTAGAAAAAGAACAAAACAGAGAACAAAGGAGGAAGAAACAAAAATAATTTACTTGCTCACAAA
CGTGCAGCAAGGAAGCAATCTAAGTTTCACAACTGATATGCTTAATTTTTCAATAAGAAAAACAA
TACATTTATAGCCAACTACATCAGTTATTACTACCTAATACCACTAAGTAGCCTAGTAACTTTAA
AAACATTGCTTGTACACATGGATAAGCTGACTTATCAGCTCAACCAACCCATCAAAACATCAACA
TCAAAGTTCATTCTCAACCAAACTAAATTACAGAATCATCATAGTACCATGCATTTTAACAAAAA
CATAATAGCAGCATGGTTGGCCATTTTTAACACTCCTCCTTGGACTCCATGCTGCAATACCAGTC
AT
Found at i:25520960 original size:9 final size:10
Alignment explanation
Indices: 25520936--25520975 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
25520926 ATTCTAGAAA
*
25520936 TTTTTAAAAT
1 TTTTTTAAAT
25520946 TTTTTTAAAT
1 TTTTTTAAAT
*
25520956 TTTTTTAGAT
1 TTTTTTAAAT
*
25520966 TTTTTAAAAT
1 TTTTTTAAAT
25520976 ACTATATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (10 bp):
TTTTTTAAAT
Found at i:25521203 original size:23 final size:23
Alignment explanation
Indices: 25521177--25521223 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
25521167 GTAAAATTCA
25521177 ACTCGATTTGAATTAGAAACTCG
1 ACTCGATTTGAATTAGAAACTCG
25521200 ACTCGATTTGAATTAGAAACTCG
1 ACTCGATTTGAATTAGAAACTCG
25521223 A
1 A
25521224 ATTACTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (23 bp):
ACTCGATTTGAATTAGAAACTCG
Found at i:25522240 original size:6 final size:6
Alignment explanation
Indices: 25522229--25522255 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
25522219 TAAGGAGAAG
25522229 AAAGTA AAAGTA AAAGTA AAAGTA AAA
1 AAAGTA AAAGTA AAAGTA AAAGTA AAA
25522256 TAGGGATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (6 bp):
AAAGTA
Found at i:25522822 original size:42 final size:43
Alignment explanation
Indices: 25522760--25522878 Score: 163
Period size: 42 Copynumber: 2.8 Consensus size: 43
25522750 GTTTACAAAC
*
25522760 AAAAACGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGA-A
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAGA
* *
25522802 AAAAACACCGCTAAAAACCATGTTCTTTA-CAGGCGCTTAGAGA
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGC-GGCGCTTAGAGA
* *
25522845 AAAAA-GCCGCTAAAGATCATGCTCTTTAGCGGCG
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCG
25522879 TTTTTTCTTA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
41 1 0.01
42 59 0.88
43 7 0.10
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAGA
Found at i:25522896 original size:42 final size:41
Alignment explanation
Indices: 25522850--25523105 Score: 370
Period size: 42 Copynumber: 6.2 Consensus size: 41
25522840 AGAGAAAAAA
* *
25522850 GCCGCTAAAGATCATGCTCTTTAGCGGCGTTTTTTCTTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTT-TTAAGC
25522892 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTT-TAAGC
* * * * *
25522934 GCCTCAAAAGAACACGGTTTTTAGCGGCGTTTTTTCTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTTAAGC
*
25522975 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTCTTTCTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTT-TTTTTAAGC
25523017 GCCGCTAAAGAACATGGTCTTTAGCGGCG-TTTTTTTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTTAAGC
* **
25523057 ACCGCTAAAGAACATTATCTTTAGCGGCGTTTTTTTCTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTT-TAAGC
25523099 GCCGCTA
1 GCCGCTA
25523106 GCGCTTTTAT
Statistics
Matches: 194, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
40 34 0.18
41 42 0.22
42 118 0.61
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (41 bp):
GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTTAAGC
Found at i:25522993 original size:83 final size:83
Alignment explanation
Indices: 25522867--25523103 Score: 386
Period size: 83 Copynumber: 2.9 Consensus size: 83
25522857 AAGATCATGC
25522867 TCTTTAGCGGCGTTTTTTCTTAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAA
1 TCTTTAGCGGCGTTTTTTC-TAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAA
*
25522932 GCGCCTCAAAAGAACACGG
65 GCGCCGCAAAAGAACACGG
* *
25522951 TTTTTAGCGGCGTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTCTTTCTAAG
1 TCTTTAGCGGCGTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
* *
25523016 CGCCGCTAAAGAACATGG
66 CGCCGCAAAAGAACACGG
* **
25523034 TCTTTAGCGGCGTTTTTT-TAAGCACCGCTAAAGAACATTATCTTTAGCGGCGTTTTTTTCTAAG
1 TCTTTAGCGGCGTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
25523098 CGCCGC
66 CGCCGC
25523104 TAGCGCTTTT
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
82 48 0.34
83 77 0.54
84 18 0.13
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (83 bp):
TCTTTAGCGGCGTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
CGCCGCAAAAGAACACGG
Found at i:25523006 original size:125 final size:124
Alignment explanation
Indices: 25522850--25523105 Score: 390
Period size: 125 Copynumber: 2.1 Consensus size: 124
25522840 AGAGAAAAAA
*
25522850 GCCGCTAAAGATCATGCTCTTTAGCGGCGTTT-TTTCTTAAGCGCCGCTAAAGAACATGGTCTTT
1 GCCGCTAAAGAACATGCTCTTTAGCGGCGTTTCTTTC-TAAGCGCCGCTAAAGAACATGGTCTTT
* * * *
25522914 AGCGGCGTTTTTTTCTAAGCGCCTCAAAAGAACACGGTTTTTAGCGGCG-TTTTTTCTAAGC
65 AGCGGCG-TTTTTT-TAAGCACCGCAAAAGAACACGATCTTTAGCGGCGTTTTTTTCTAAGC
*
25522975 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTCTTTCTAAGCGCCGCTAAAGAACATGGTCTTTA
1 GCCGCTAAAGAACATGCTCTTTAGCGGCGTTTCTTTCTAAGCGCCGCTAAAGAACATGGTCTTTA
* **
25523040 GCGGCGTTTTTTTAAGCACCGCTAAAGAACATTATCTTTAGCGGCGTTTTTTTCTAAGC
66 GCGGCGTTTTTTTAAGCACCGCAAAAGAACACGATCTTTAGCGGCGTTTTTTTCTAAGC
25523099 GCCGCTA
1 GCCGCTA
25523106 GCGCTTTTAT
Statistics
Matches: 120, Mismatches: 9, Indels: 5
0.90 0.07 0.04
Matches are distributed among these distances:
123 27 0.22
124 25 0.21
125 64 0.53
126 4 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (124 bp):
GCCGCTAAAGAACATGCTCTTTAGCGGCGTTTCTTTCTAAGCGCCGCTAAAGAACATGGTCTTTA
GCGGCGTTTTTTTAAGCACCGCAAAAGAACACGATCTTTAGCGGCGTTTTTTTCTAAGC
Found at i:25527466 original size:42 final size:41
Alignment explanation
Indices: 25527419--25527500 Score: 137
Period size: 42 Copynumber: 2.0 Consensus size: 41
25527409 GTTTGATCTC
*
25527419 AATGAATAATTCAAATTCCTCTAACTATACACTGTACCANTT
1 AATGAATAATTCAAAGTCCTCTAACTATACACTGTACCA-TT
*
25527461 AATGAATAATTCAAAGTCCTCTAACTATACACTTTACCAT
1 AATGAATAATTCAAAGTCCTCTAACTATACACTGTACCAT
25527501 GAGGAACTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 1 0.03
42 37 0.97
ACGTcount: A:0.39, C:0.22, G:0.05, T:0.33
Consensus pattern (41 bp):
AATGAATAATTCAAAGTCCTCTAACTATACACTGTACCATT
Found at i:25528424 original size:25 final size:25
Alignment explanation
Indices: 25528403--25528452 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
25528393 TTACACATTA
25528403 TCAAATAAAAATAAACAGCACAAAAT
1 TCAAATAAAAATAAACA-CACAAAAT
*
25528429 TTAAATAAAAATAAACACACAAAA
1 TCAAATAAAAATAAACACACAAAA
25528453 CTTTTTTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.68, C:0.14, G:0.02, T:0.16
Consensus pattern (25 bp):
TCAAATAAAAATAAACACACAAAAT
Done.