Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 88 of 205
Found at i:25838328 original size:139 final size:140
Alignment explanation
Indices: 25838182--25838532 Score: 436
Period size: 139 Copynumber: 2.5 Consensus size: 140
25838172 ATGTATTGTG
* * * *
25838182 TATATGCTGCCCATTTGTTATATATATACTGTTCAATTTTGGTGTAAAAATATTGCTCAATTTGG
1 TATATGCTGCCCATTTGTTGTATATATACTGTTCAATTTTGGTGTAAAAATACTGCTAAATGTGG
* * *
25838247 TATGTATATGCTGCCTAGTTGTTGTATATCTATGCTGTTAAATTTTGGTGT-AAAGTGCTGTTAA
66 TATATATATGCTGCCTAGTTGCTGTATATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAA
25838311 ATTTGGTATA
131 ATTTGGTATA
** * * * * * * *
25838321 TATATGCTAACTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATGTGG
1 TATATGCTGCCCATTTGTTGTATATATACTGTTCAATTTTGGTGTAAAAATACTGCTAAATGTGG
* *
25838386 TATATATATGCTGCCTATTTGCTGTATATATATGCTGTTAAGTTTTGGTGTAAAAGTGCTGTTAA
66 TATATATATGCTGCCTAGTTGCTGTATATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAA
*
25838451 ATTTGGTATG
131 ATTTGGTATA
* * * * * * *
25838461 TATATGCTGCCCATTTGTTGTATATA-AGCTGTCCAAATTTTAGTGTATAAATGCTGTTTAATTT
1 TATATGCTGCCCATTTGTTGTATATATA-CTGTTC-AATTTTGGTGTAAAAATACTGCTAAATGT
25838525 GGTATATA
64 GGTATATA
25838533 ATTGCTGTTC
Statistics
Matches: 178, Mismatches: 31, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
139 98 0.55
140 48 0.27
141 32 0.18
ACGTcount: A:0.26, C:0.09, G:0.19, T:0.45
Consensus pattern (140 bp):
TATATGCTGCCCATTTGTTGTATATATACTGTTCAATTTTGGTGTAAAAATACTGCTAAATGTGG
TATATATATGCTGCCTAGTTGCTGTATATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAA
ATTTGGTATA
Found at i:25838361 original size:24 final size:24
Alignment explanation
Indices: 25838277--25838547 Score: 135
Period size: 23 Copynumber: 11.6 Consensus size: 24
25838267 GTTGTATATC
25838277 TATGCTGTTAAATTTTGGTGTA-A
1 TATGCTGTTAAATTTTGGTGTATA
*
25838300 -AGTGCTGTTAAA-TTTGGTATATA
1 TA-TGCTGTTAAATTTTGGTGTATA
* *
25838323 TATGC---TAACTATTTGCTGTATA
1 TATGCTGTTAAAT-TTTGGTGTATA
25838345 TATGCTGTTAAATTTTGGTGTA-A
1 TATGCTGTTAAATTTTGGTGTATA
* * *
25838368 AAGTGCTGTTAAA-TGTGGTATATA
1 TA-TGCTGTTAAATTTTGGTGTATA
* *
25838392 TATGCTGCCT--A-TTTGCTGTATATA
1 TATGCTG-TTAAATTTTG--GTGTATA
*
25838416 TATGCTGTTAAGTTTTGGTGTA-A
1 TATGCTGTTAAATTTTGGTGTATA
* * *
25838439 AAGTGCTGTTAAA-TTTGGTATGTA
1 TA-TGCTGTTAAATTTTGGTGTATA
*** *
25838463 TATGCTG-CCCA-TTTGTTGTATA
1 TATGCTGTTAAATTTTGGTGTATA
* * *
25838485 TAAGCTGTCCAAATTTTAGTGTATA
1 TATGCTGT-TAAATTTTGGTGTATA
* * *
25838510 AATGCTGTTTAA-TTTGGTATATA
1 TATGCTGTTAAATTTTGGTGTATA
25838533 -ATTGCTGTTCAAATT
1 TA-TGCTGTT-AAATT
25838548 GATGTATAAG
Statistics
Matches: 186, Mismatches: 38, Indels: 46
0.69 0.14 0.17
Matches are distributed among these distances:
20 3 0.02
22 43 0.23
23 59 0.32
24 57 0.31
25 20 0.11
26 4 0.02
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.45
Consensus pattern (24 bp):
TATGCTGTTAAATTTTGGTGTATA
Found at i:25838555 original size:23 final size:23
Alignment explanation
Indices: 25838504--25838556 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
25838494 CAAATTTTAG
* * *
25838504 TGTATAAATGCTGTTTAATTTGG
1 TGTATAAATGCTGTTCAAATTGA
* *
25838527 TATATAATTGCTGTTCAAATTGA
1 TGTATAAATGCTGTTCAAATTGA
25838550 TGTATAA
1 TGTATAA
25838557 GAGCTGTCCA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.32, C:0.06, G:0.17, T:0.45
Consensus pattern (23 bp):
TGTATAAATGCTGTTCAAATTGA
Found at i:25842938 original size:45 final size:44
Alignment explanation
Indices: 25842688--25843800 Score: 530
Period size: 45 Copynumber: 25.0 Consensus size: 44
25842678 GTGTCTTCGA
* *
25842688 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAG
1 TCTGCTTCGCTGTCAATACAGG-AGGCAAGATCTGCTATCTTCAG
* * * * *
25842733 TCTAC-TCTACTG-CAA-ACCTAGAGAGGCAAG-GCTGGTGTCTTC-G
1 TCTGCTTC-GCTGTCAATA-C-AG-GAGGCAAGATCTGCTATCTTCAG
* * *
25842776 ATTTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAG
1 -TCTGCTTCGCTGTCAATACAGG-AGGCAAGATCTGCTATCTTCAG
* * *
25842822 TCTGC-TCTGCTG-CAA-ACCTAGGGAGGCAAGGT-TGGT-GCATTC-G
1 TCTGCTTC-GCTGTCAATA-C-A-GGAGGCAAGATCTGCTATC-TTCAG
* *
25842865 ATCTGCTTCGCTGTCAGTATAGGAAGGCAAGATCTGCTATCTTCAG
1 -TCTGCTTCGCTGTCAATACAGG-AGGCAAGATCTGCTATCTTCAG
* * ** * * *
25842911 CCTGCTCCGCTGTCAACCCAGAGAGGCAAG-GCTGGTGTCTTC-G
1 TCTGCTTCGCTGTCAATACAG-GAGGCAAGATCTGCTATCTTCAG
* * * * * *
25842954 ATCTGCTTTGCTATTAGTACAGGAAGGCAATATCTACTATCTTCAG
1 -TCTGCTTCGCTGTCAATACAGG-AGGCAAGATCTGCTATCTTCAG
* * * * * *
25843000 TCTACTCCGCTG-CAA-ACCCAATGAGGCAAG-GCTGGTGTCTTC-G
1 TCTGCTTCGCTGTCAATA--C-AGGAGGCAAGATCTGCTATCTTCAG
* * *
25843043 ATCTGCTTTGCTGTCAGTACAAGAAGGCAAGATCTGCTATCTTCAG
1 -TCTGCTTCGCTGTCAATAC-AGGAGGCAAGATCTGCTATCTTCAG
* * * * *
25843089 TTTGCTCCGCTGTCAATACAGGAAGGCAAG-GCTGGTGTCTTC-G
1 TCTGCTTCGCTGTCAATACAGG-AGGCAAGATCTGCTATCTTCAG
* * * * *
25843132 ATCTACTTTGCTGTCAGTACTGAAAGGCAAGATCTGCTATCTTCAG
1 -TCTGCTTCGCTGTCAATACAG-GAGGCAAGATCTGCTATCTTCAG
* * * * * *
25843178 TCTGCTCCGCTGTCAGTACAAGAAGGCAAGATCTGGTGTCTTCAA
1 TCTGCTTCGCTGTCAATAC-AGGAGGCAAGATCTGCTATCTTCAG
* * * * * *
25843223 TCTACTTTGCTGTCAGTATAGGAAGGCAAGATATGTTATCTTCAG
1 TCTGCTTCGCTGTCAATACAGG-AGGCAAGATCTGCTATCTTCAG
* * * *
25843268 TCTGCTTCGCTGTCAGTACAGGAAGGCAAG-GCTGGTGTCTTC-G
1 TCTGCTTCGCTGTCAATACAGG-AGGCAAGATCTGCTATCTTCAG
* *
25843311 ATCTGCTTCGTTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
1 -TCTGCTTCGCTGTCAATACAGG-AGGCAAGATCTGCTATCTTCAG
* ** * * *
25843357 TCTGCTCCGCTGTCAACCCAGGGAGGCAAGGT-TGGTGTCTTC-G
1 TCTGCTTCGCTGTCAATACA-GGAGGCAAGATCTGCTATCTTCAG
* * ** * *
25843400 ATCTAG-TTCGCTGTTAGTATTGGAAGGCAAGATCTGCTATCTTTAA
1 -TCT-GCTTCGCTGTCAATACAGG-AGGCAAGATCTGCTATCTTCAG
* * * *
25843446 TCTGCTCCGCTG-CAA-ACCCAGGGAGGCAAG-GCTGGTGTCTTC-G
1 TCTGCTTCGCTGTCAATA--CA-GGAGGCAAGATCTGCTATCTTCAG
* * ** * *
25843489 ATCTGCTTCGCTGTCAGTATAGGAAGATAATATCTGCTATCTTTAG
1 -TCTGCTTCGCTGTCAATACAGG-AGGCAAGATCTGCTATCTTCAG
* * * * * *
25843535 TCTGCTCCGCTATCAGTACAGGAAGGCAAG-GCTGGTGTCTTC-G
1 TCTGCTTCGCTGTCAATACAGG-AGGCAAGATCTGCTATCTTCAG
* * * * *
25843578 ATCTACTTCGCTGTCAGTACAGGAAGGGAAGATCTGTTATCTTTAG
1 -TCTGCTTCGCTGTCAATACAGG-AGGCAAGATCTGCTATCTTCAG
* * * *
25843624 TCTGC-TCTGCTGTCAGTACAGGAAGGCAAGGT-TGGTGTCTTC-G
1 TCTGCTTC-GCTGTCAATACAGG-AGGCAAGATCTGCTATCTTCAG
* * * * *
25843667 ATATGCTTCGCTATCAGTACAGGAAGGCAAGATTTGCTCTCTTCAG
1 -TCTGCTTCGCTGTCAATACAGG-AGGCAAGATCTGCTATCTTCAG
* * * * *
25843713 TCTGCTTCGCTGTCAGTACAGGAAGGCAAG-GCTGGTGTCTTCAA
1 TCTGCTTCGCTGTCAATACAGG-AGGCAAGATCTGCTATCTTCAG
* *
25843757 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTTATCTTCA
1 TCTGCTTCGCTGTCAATACAGG-AGGCAAGATCTGCTATCTTCA
25843801 ACCTACTCCA
Statistics
Matches: 803, Mismatches: 193, Indels: 144
0.70 0.17 0.13
Matches are distributed among these distances:
43 22 0.03
44 345 0.43
45 411 0.51
46 25 0.03
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (44 bp):
TCTGCTTCGCTGTCAATACAGGAGGCAAGATCTGCTATCTTCAG
Found at i:25843799 original size:89 final size:89
Alignment explanation
Indices: 25842496--25843800 Score: 1415
Period size: 89 Copynumber: 14.7 Consensus size: 89
25842486 AGGTTACTCC
* * * * * * * *
25842496 GCTGGTGT-TGTCGATCTGCTTCGCTGCCAGTACAGAAAGACAAGATCTGCTGTTTTTAGTTTAC
1 GCTGGTGTCT-TCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGC
* * * *
25842560 TCTGCTGTAAACT-CAGGGAGGCAAG
65 TCCGCTGT-CAGTACAGGAAGGCAAG
* * * * * ** * *
25842585 GCTAGTATCTTTGAT-TGCTTCGCTGCCAATACAGGAAAACAATGATAC-GTTATCTTTAGTCTG
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAA-GAT-CTGCTATCTTCAGTCTG
* * *
25842648 CTCTGCTG-CA-AACTCAGGGAGGCAAG
64 CTCCGCTGTCAGTA--CAGGAAGGCAAG
* * *
25842674 GCTAGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTACT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCT
** *
25842739 CTACTG-CA-AACCTA-GAGAGGCAAG
66 CCGCTGTCAGTA-C-AGGA-AGGCAAG
* *
25842763 GCTGGTGTCTTCGATTTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTTAGTCTGCT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCT
* * *
25842828 CTGCTG-CA-AACCTAGGGAGGCAAG
66 CCGCTGTCAGTA-C-AGGAAGGCAAG
* * *
25842852 GTTGGTG-CATTCGATCTGCTTCGCTGTCAGTATAGGAAGGCAAGATCTGCTATCTTCAGCCTGC
1 GCTGGTGTC-TTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGC
***
25842916 TCCGCTGTCAACCCA-GAGAGGCAAG
65 TCCGCTGTCAGTACAGGA-AGGCAAG
* * * * * *
25842941 GCTGGTGTCTTCGATCTGCTTTGCTATTAGTACAGGAAGGCAATATCTACTATCTTCAGTCTACT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCT
* *
25843006 CCGCTG-CA-AACCCAATG-AGGCAAG
66 CCGCTGTCAGTA--C-AGGAAGGCAAG
* * *
25843030 GCTGGTGTCTTCGATCTGCTTTGCTGTCAGTACAAGAAGGCAAGATCTGCTATCTTCAGTTTGCT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCT
*
25843095 CCGCTGTCAATACAGGAAGGCAAG
66 CCGCTGTCAGTACAGGAAGGCAAG
* * * *
25843119 GCTGGTGTCTTCGATCTACTTTGCTGTCAGTACTGAAAGGCAAGATCTGCTATCTTCAGTCTGCT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCT
*
25843184 CCGCTGTCAGTACAAGAAGGCAAG
66 CCGCTGTCAGTACAGGAAGGCAAG
* * * * * * *
25843208 ATCTGGTGTCTTCAATCTACTTTGCTGTCAGTATAGGAAGGCAAGATATGTTATCTTCAGTCTGC
1 -GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGC
*
25843273 TTCGCTGTCAGTACAGGAAGGCAAG
65 TCCGCTGTCAGTACAGGAAGGCAAG
*
25843298 GCTGGTGTCTTCGATCTGCTTCGTTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCT
*** *
25843363 CCGCTGTCAACCCAGGGAGGCAAG
66 CCGCTGTCAGTACAGGAAGGCAAG
* * ** * *
25843387 GTTGGTGTCTTCGATCTAG-TTCGCTGTTAGTATTGGAAGGCAAGATCTGCTATCTTTAATCTGC
1 GCTGGTGTCTTCGATCT-GCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGC
* *
25843451 TCCGCTG-CA-AACCCAGGGAGGCAAG
65 TCCGCTGTCAGTA--CAGGAAGGCAAG
* ** * *
25843476 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTATAGGAAGATAATATCTGCTATCTTTAGTCTGCT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCT
*
25843541 CCGCTATCAGTACAGGAAGGCAAG
66 CCGCTGTCAGTACAGGAAGGCAAG
* * * *
25843565 GCTGGTGTCTTCGATCTACTTCGCTGTCAGTACAGGAAGGGAAGATCTGTTATCTTTAGTCTGCT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCT
*
25843630 CTGCTGTCAGTACAGGAAGGCAAG
66 CCGCTGTCAGTACAGGAAGGCAAG
* * * * *
25843654 GTTGGTGTCTTCGATATGCTTCGCTATCAGTACAGGAAGGCAAGATTTGCTCTCTTCAGTCTGCT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCT
*
25843719 TCGCTGTCAGTACAGGAAGGCAAG
66 CCGCTGTCAGTACAGGAAGGCAAG
* *
25843743 GCTGGTGTCTTCAATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTTATCTTCA
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCA
25843801 ACCTACTCCA
Statistics
Matches: 1054, Mismatches: 132, Indels: 60
0.85 0.11 0.05
Matches are distributed among these distances:
87 1 0.00
88 36 0.03
89 898 0.85
90 116 0.11
91 3 0.00
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (89 bp):
GCTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCT
CCGCTGTCAGTACAGGAAGGCAAG
Found at i:25846985 original size:51 final size:50
Alignment explanation
Indices: 25846823--25847006 Score: 178
Period size: 51 Copynumber: 3.6 Consensus size: 50
25846813 AAGTTGCTAG
*
25846823 GTCACATGTGTATTACTATGTGCAGGCTACTACGTGTACCAGAATG--ATA
1 GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGAATGAAATA
** ** * * * * *
25846872 GGTTGCATGTGTAGTACTATGTGCAGGCTGTTATGCGTACCGAAT-AACTTC
1 -GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGAATGAA-ATA
*
25846923 GATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAG-ATGAAAATA
1 G-TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CAGAATG-AAATA
*
25846975 GTCACATGTGTAGTACTATGTGCATGCTACTA
1 GTCACATGTGTAGTACTATGTGCAGGCTACTA
25847007 TGTGAACCGA
Statistics
Matches: 105, Mismatches: 22, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
49 5 0.05
50 32 0.30
51 62 0.59
52 4 0.04
53 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (50 bp):
GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACAGAATGAAATA
Found at i:25854110 original size:3 final size:3
Alignment explanation
Indices: 25854095--25854206 Score: 89
Period size: 3 Copynumber: 37.3 Consensus size: 3
25854085 AGGTAAATTG
* * * * * *
25854095 ATA ATA ATT ATA ATA ATA ATA CTA ATA ATA AAA ATA ATA GTA GTA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
25854143 ATA ATA ATA ATA ATA ATA ATA ATG ATG ATG ATG ATG ATG ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
25854191 ATA GTA ATA ATG ATA A
1 ATA ATA ATA ATA ATA A
25854207 ATTAATATTA
Statistics
Matches: 93, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 93 1.00
ACGTcount: A:0.55, C:0.01, G:0.11, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:25855255 original size:15 final size:15
Alignment explanation
Indices: 25855235--25855269 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
25855225 GGCCGTATGA
*
25855235 TAGTTGGGCTAGTTG
1 TAGTTGGGCTAGGTG
*
25855250 TAGTTGGTCTAGGTG
1 TAGTTGGGCTAGGTG
25855265 TAGTT
1 TAGTT
25855270 TGGGTTTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.14, C:0.06, G:0.37, T:0.43
Consensus pattern (15 bp):
TAGTTGGGCTAGGTG
Found at i:25858418 original size:50 final size:49
Alignment explanation
Indices: 25858305--25858491 Score: 238
Period size: 50 Copynumber: 3.8 Consensus size: 49
25858295 TCATATATCG
*
25858305 GTGCTGATGCCATGTCCTAGACATGGTCTTACACTGGCAC-TCATC-T-C
1 GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTTC-TCGTCC
* * * * *
25858352 GAGCTGATGCCATGTCCCAAACATGGTCTTTCACTGTCCCTTCTCTGTCC
1 GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTTCTC-GTCC
* *
25858402 GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCCTCGGTCT
1 GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTTCTC-GTCC
25858452 GTG-TCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
1 GTGCT-GATGCCATGTCCCAGACATGGTCTTACACTGGCAC
25858492 ACTTATTGCC
Statistics
Matches: 121, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
47 36 0.30
48 2 0.02
49 2 0.02
50 81 0.67
ACGTcount: A:0.18, C:0.32, G:0.22, T:0.29
Consensus pattern (49 bp):
GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTTCTCGTCC
Found at i:25858427 original size:97 final size:99
Alignment explanation
Indices: 25858305--25858487 Score: 282
Period size: 97 Copynumber: 1.9 Consensus size: 99
25858295 TCATATATCG
*
25858305 GTGCTGATGCCATGTCCTAGACATGGTCTTACACTGGCACTCATC-TC-GAG-CTGATGCCATGT
1 GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATCGTCTGAGTC-GATGCCATGT
*
25858367 CCCAAACATGGTCTTTCACTGTCCCTTCTCTGTCC
65 CCCAAACATGGTCTTACACTGTCCCTTCTCTGTCC
* *
25858402 GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCCTCGGTCTGTGTCGATGCCATGT
1 GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATC-GTCTGAGTCGATGCCATGT
*
25858467 CCCAGACATGGTCTTACACTG
65 CCCAAACATGGTCTTACACTG
25858488 GCACACTTAT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
97 43 0.56
99 2 0.03
100 31 0.40
101 1 0.01
ACGTcount: A:0.17, C:0.31, G:0.22, T:0.30
Consensus pattern (99 bp):
GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATCGTCTGAGTCGATGCCATGTC
CCAAACATGGTCTTACACTGTCCCTTCTCTGTCC
Found at i:25858560 original size:44 final size:44
Alignment explanation
Indices: 25858512--25858606 Score: 127
Period size: 44 Copynumber: 2.2 Consensus size: 44
25858502 ATGGTCCAAC
* * *
25858512 CATGGTCTTTTCCGTCACTTCTTTCTTAATTGCCATGTTATAAA
1 CATGGACTTTTCCGTCAATTCTTACTTAATTGCCATGTTATAAA
** *
25858556 CATGGACTTTTCTTTCAATTCTTACTTAATTTCCATGTTATAAA
1 CATGGACTTTTCCGTCAATTCTTACTTAATTGCCATGTTATAAA
*
25858600 GATGGAC
1 CATGGAC
25858607 CTTGAGATAT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.44
Consensus pattern (44 bp):
CATGGACTTTTCCGTCAATTCTTACTTAATTGCCATGTTATAAA
Found at i:25860467 original size:19 final size:19
Alignment explanation
Indices: 25860445--25860482 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
25860435 TCAAACATCC
25860445 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
25860464 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
25860483 ACCCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:25870369 original size:19 final size:19
Alignment explanation
Indices: 25870347--25870384 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
25870337 TCAATCATCC
25870347 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
25870366 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
25870385 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:25871862 original size:33 final size:33
Alignment explanation
Indices: 25871825--25871890 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
25871815 GGCGATCAAA
25871825 GAGTATAGAAGAAAACAAATCGAAAAAGATATT
1 GAGTATAGAAGAAAACAAATCGAAAAAGATATT
* * *
25871858 GAGTATTGAAGTAAACAACTCGAAAAAGATATT
1 GAGTATAGAAGAAAACAAATCGAAAAAGATATT
25871891 AACATAATTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.53, C:0.08, G:0.18, T:0.21
Consensus pattern (33 bp):
GAGTATAGAAGAAAACAAATCGAAAAAGATATT
Found at i:25878102 original size:16 final size:14
Alignment explanation
Indices: 25878064--25878103 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 14
25878054 AATTGAATAC
25878064 ATATTGACATGCTA
1 ATATTGACATGCTA
25878078 ATATATGACATGCATA
1 ATAT-TGACATGC-TA
25878094 TATATTGACA
1 -ATATTGACA
25878104 CCACCCTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 4 0.17
15 8 0.35
16 7 0.30
17 4 0.17
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (14 bp):
ATATTGACATGCTA
Found at i:25879546 original size:39 final size:39
Alignment explanation
Indices: 25879503--25879589 Score: 113
Period size: 39 Copynumber: 2.2 Consensus size: 39
25879493 TATTCACTTT
* * *
25879503 CAAGCATATATCATATTACAT-ATATAGTCACTTAACATA
1 CAAGCATATATCATAGTAC-TCATATAATCACATAACATA
*
25879542 CAAGCATATATCATAGTACTCATATAATCACATAACATT
1 CAAGCATATATCATAGTACTCATATAATCACATAACATA
*
25879581 TAAGCATAT
1 CAAGCATAT
25879590 GTCACAATAC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
38 1 0.02
39 41 0.98
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.32
Consensus pattern (39 bp):
CAAGCATATATCATAGTACTCATATAATCACATAACATA
Found at i:25879659 original size:15 final size:16
Alignment explanation
Indices: 25879635--25879672 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
25879625 GCATAATAGT
*
25879635 CACATGTCACA-TAAA
1 CACATATCACATTAAA
*
25879650 CACATATCACATTACA
1 CACATATCACATTAAA
25879666 CACATAT
1 CACATAT
25879673 TCATAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.45, C:0.29, G:0.03, T:0.24
Consensus pattern (16 bp):
CACATATCACATTAAA
Found at i:25881471 original size:18 final size:19
Alignment explanation
Indices: 25881443--25881478 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
25881433 ATCGTTCATT
*
25881443 CTTTCTTTTTTTAGTTTTA
1 CTTTCTTTTTTTAATTTTA
25881462 CTTT-TTTTTTTAATTTT
1 CTTTCTTTTTTTAATTTT
25881479 TATTTTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.11, C:0.08, G:0.03, T:0.78
Consensus pattern (19 bp):
CTTTCTTTTTTTAATTTTA
Found at i:25881863 original size:21 final size:21
Alignment explanation
Indices: 25881822--25881863 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
25881812 ATTTCAAAAC
*
25881822 ATTTTATGATTTTTATTTAAT
1 ATTTTATGATTTTTATATAAT
25881843 ATTTTATGATTTTCTA-ATAAT
1 ATTTTATGATTTT-TATATAAT
25881864 CGTGTTTAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (21 bp):
ATTTTATGATTTTTATATAAT
Found at i:25886777 original size:50 final size:50
Alignment explanation
Indices: 25886697--25886829 Score: 137
Period size: 50 Copynumber: 2.7 Consensus size: 50
25886687 CAATGTCATA
* ** **
25886697 TCCCAGATATGGTCTTTCATGGGAGTTCTCATATAGGTG-C-ACGTGCCATG
1 TCCCAGACATGGTCTCACATGGGACCTCTCATATAGGTGCCAAC--GCCATG
* * *
25886747 TCTCAGACATGGTCTCACGA-GGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTCAC-ATGGGACCTCTCATATAGGTGCCAACGCCATG
*
25886797 TCCCAGACATGGTCTTACATGGGACCTCTCATA
1 TCCCAGACATGGTCTCACATGGGACCTCTCATA
25886830 ATCTCAATGA
Statistics
Matches: 68, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
49 1 0.01
50 63 0.93
51 2 0.03
52 2 0.03
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (50 bp):
TCCCAGACATGGTCTCACATGGGACCTCTCATATAGGTGCCAACGCCATG
Found at i:25888313 original size:23 final size:23
Alignment explanation
Indices: 25888287--25888331 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
25888277 CCGATCTCCA
25888287 AATAATCATCACAACCAAAACAG
1 AATAATCATCACAACCAAAACAG
25888310 AATAATCATCACAACCAAAACA
1 AATAATCATCACAACCAAAACA
25888332 CACACATCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.58, C:0.27, G:0.02, T:0.13
Consensus pattern (23 bp):
AATAATCATCACAACCAAAACAG
Found at i:25892710 original size:4 final size:4
Alignment explanation
Indices: 25892691--25892770 Score: 60
Period size: 4 Copynumber: 19.5 Consensus size: 4
25892681 AGTTACCCCT
*
25892691 TTTA TTTTA TTTTA TTTA -TTA TTTT TTTA TATTA TTTA -TT- TTTA TTT-
1 TTTA -TTTA -TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA
*
25892738 TCCTA TTTTA TTTA TTTA TTTTA TTTA TTTA TT
1 T-TTA -TTTA TTTA TTTA -TTTA TTTA TTTA TT
25892771 ATTCTTCTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 17
0.75 0.05 0.20
Matches are distributed among these distances:
3 8 0.13
4 35 0.56
5 19 0.30
6 1 0.02
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:25892714 original size:17 final size:17
Alignment explanation
Indices: 25892692--25892773 Score: 67
Period size: 17 Copynumber: 5.3 Consensus size: 17
25892682 GTTACCCCTT
25892692 TTATTTTATTTTATTTA
1 TTATTTTATTTTATTTA
25892709 TTA-TTT-TTTTA--TA
1 TTATTTTATTTTATTTA
25892722 TTA-TTTA--TT-TTTA
1 TTATTTTATTTTATTTA
*
25892735 TT-TTCCTATTTTATTTA
1 TTATT-TTATTTTATTTA
25892752 TTTATTTTA-TTTATTTA
1 -TTATTTTATTTTATTTA
25892769 TTATT
1 TTATT
25892774 CTTCTATTTA
Statistics
Matches: 53, Mismatches: 2, Indels: 21
0.70 0.03 0.28
Matches are distributed among these distances:
12 2 0.04
13 13 0.25
14 2 0.04
15 5 0.09
16 10 0.19
17 15 0.28
18 4 0.08
19 2 0.04
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (17 bp):
TTATTTTATTTTATTTA
Found at i:25892723 original size:13 final size:14
Alignment explanation
Indices: 25892696--25892770 Score: 79
Period size: 13 Copynumber: 5.4 Consensus size: 14
25892686 CCCCTTTTAT
25892696 TTTATTTTATTTATTA
1 TTTATTTTA--TATTA
25892712 TTT-TTTTATATTA
1 TTTATTTTATATTA
25892725 TTTATTTT-TATT-
1 TTTATTTTATATTA
25892737 TTCCTATTTTAT-TTA
1 TT--TATTTTATATTA
25892752 TTTATTTTAT-TTA
1 TTTATTTTATATTA
25892765 TTTATT
1 TTTATT
25892771 ATTCTTCTAT
Statistics
Matches: 54, Mismatches: 0, Indels: 13
0.81 0.00 0.19
Matches are distributed among these distances:
12 2 0.04
13 29 0.54
14 12 0.22
15 8 0.15
16 3 0.06
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATTTTATATTA
Found at i:25892756 original size:36 final size:37
Alignment explanation
Indices: 25892709--25892782 Score: 107
Period size: 36 Copynumber: 2.0 Consensus size: 37
25892699 ATTTTATTTA
*
25892709 TTATTTTTTTATATTATTTATTT-TTATT-TTCCTATT
1 TTATTTATTTATATTATTTATTTATTATTCTT-CTATT
*
25892745 TTATTTATTTATTTTATTTATTTATTATTCTTCTATT
1 TTATTTATTTATATTATTTATTTATTATTCTTCTATT
25892782 T
1 T
25892783 AGATTTTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
36 21 0.62
37 11 0.32
38 2 0.06
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.74
Consensus pattern (37 bp):
TTATTTATTTATATTATTTATTTATTATTCTTCTATT
Found at i:25892773 original size:43 final size:45
Alignment explanation
Indices: 25892698--25892782 Score: 124
Period size: 43 Copynumber: 1.9 Consensus size: 45
25892688 CCTTTTATTT
25892698 TATTTTATTTATTATTTTTTTATATTATTTATT-TT-TATTTTCC
1 TATTTTATTTATTATTTTTTTATATTATTTATTCTTCTATTTTCC
25892741 TATTTTATTTATTTATTTTATTTAT-TTA-TTATTCTTCTATTT
1 TATTTTATTTA-TTATTTT-TTTATATTATTTATTCTTCTATTT
25892783 AGATTTTAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
43 16 0.42
44 12 0.32
45 10 0.26
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (45 bp):
TATTTTATTTATTATTTTTTTATATTATTTATTCTTCTATTTTCC
Found at i:25892790 original size:43 final size:44
Alignment explanation
Indices: 25892699--25892799 Score: 104
Period size: 43 Copynumber: 2.3 Consensus size: 44
25892689 CTTTTATTTT
**
25892699 ATTTTATTTA-TTATTTTTTTATATTATTTATTTTTATTTTCCT
1 ATTTTATTTATTTATTTTTTTATATTATTTATTTTTATTTTCAG
25892742 ATTTTATTTATTTATTTTATTTAT-TTA-TTATTCTTCTA-TTT-AG
1 ATTTTATTTATTTATTTT-TTTATATTATTTATT-TT-TATTTTCAG
25892785 ATTTTAAATTTATTT
1 ATTTT--ATTTATTT
25892800 TAATTTTTCT
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
43 20 0.40
44 15 0.30
45 15 0.30
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.71
Consensus pattern (44 bp):
ATTTTATTTATTTATTTTTTTATATTATTTATTTTTATTTTCAG
Found at i:25892897 original size:11 final size:11
Alignment explanation
Indices: 25892881--25892923 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
25892871 TATCATTGAG
25892881 TTTATTATTTT
1 TTTATTATTTT
25892892 TTTATT-TTTT
1 TTTATTATTTT
*
25892902 GTT-TTA-TTT
1 TTTATTATTTT
25892911 TTTATTATTTT
1 TTTATTATTTT
25892922 TT
1 TT
25892924 AATTTTGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
9 7 0.26
10 9 0.33
11 11 0.41
ACGTcount: A:0.14, C:0.00, G:0.02, T:0.84
Consensus pattern (11 bp):
TTTATTATTTT
Found at i:25892916 original size:30 final size:30
Alignment explanation
Indices: 25892881--25892956 Score: 95
Period size: 28 Copynumber: 2.6 Consensus size: 30
25892871 TATCATTGAG
*
25892881 TTTATTATTTTTTTATTTTTTGTTTTATTT
1 TTTATTATTTTTTTATTTTTTGTTTTAGTT
*
25892911 TTTATTA-TTTTTTA-ATTTTGTTTTAGTT
1 TTTATTATTTTTTTATTTTTTGTTTTAGTT
**
25892939 GCT-TTATTTTTTTATTTT
1 TTTATTATTTTTTTATTTT
25892957 CTTAAACTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
27 3 0.08
28 20 0.51
29 9 0.23
30 7 0.18
ACGTcount: A:0.14, C:0.01, G:0.05, T:0.79
Consensus pattern (30 bp):
TTTATTATTTTTTTATTTTTTGTTTTAGTT
Found at i:25892929 original size:23 final size:22
Alignment explanation
Indices: 25892881--25892934 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
25892871 TATCATTGAG
* *
25892881 TTTATTATTTTTTTATTTTTTGT
1 TTTATT-TTTTATTATTTTTTAT
25892904 TTTATTTTTTATTATTTTTTAAT
1 TTTATTTTTTATTATTTTTT-AT
*
25892927 TTTGTTTT
1 TTTATTTT
25892935 AGTTGCTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 13 0.48
23 14 0.52
ACGTcount: A:0.15, C:0.00, G:0.04, T:0.81
Consensus pattern (22 bp):
TTTATTTTTTATTATTTTTTAT
Found at i:25892934 original size:22 final size:21
Alignment explanation
Indices: 25892888--25892934 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
25892878 GAGTTTATTA
* *
25892888 TTTTTTTATTTTTTGTTTTAT
1 TTTTTTTATTTTTTATTTTAG
25892909 TTTTTATTATTTTTTAATTTT-G
1 TTTTT-TTATTTTTT-ATTTTAG
25892931 TTTT
1 TTTT
25892935 AGTTGCTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 5 0.23
22 13 0.59
23 4 0.18
ACGTcount: A:0.13, C:0.00, G:0.04, T:0.83
Consensus pattern (21 bp):
TTTTTTTATTTTTTATTTTAG
Found at i:25893153 original size:80 final size:79
Alignment explanation
Indices: 25892973--25893187 Score: 394
Period size: 80 Copynumber: 2.7 Consensus size: 79
25892963 CTTGTTTTAA
25892973 TTATTATTTTGAAATATATTTTTATGGTTGTTTCTAATCGAGTTATAACACTTAATCTTCACTAT
1 TTATTATTTTGAAATATATTTTTATGGTTGTTTCTAATCGAGTTATAACACTTAATCTTCACTAT
25893038 TTGTGTTTATTTTC
66 TTGTGTTTATTTTC
25893052 TTATTATTTTGAAATATATTTTTATGGTTGTTTCTAATCGAGTTATAACAACTTAATCTTCACTA
1 TTATTATTTTGAAATATATTTTTATGGTTGTTTCTAATCGAGTTATAAC-ACTTAATCTTCACTA
25893117 TTTGTGTTTATTTTC
65 TTTGTGTTTATTTTC
* *
25893132 TTATTATTTTGAAATAAATTTTTATGGTTGTTTCTAATCAAGTTATAACCACTTAA
1 TTATTATTTTGAAATATATTTTTATGGTTGTTTCTAATCGAGTTATAA-CACTTAA
25893188 AAATGTAGGC
Statistics
Matches: 132, Mismatches: 2, Indels: 3
0.96 0.01 0.02
Matches are distributed among these distances:
79 49 0.37
80 82 0.62
81 1 0.01
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.53
Consensus pattern (79 bp):
TTATTATTTTGAAATATATTTTTATGGTTGTTTCTAATCGAGTTATAACACTTAATCTTCACTAT
TTGTGTTTATTTTC
Found at i:25894443 original size:23 final size:23
Alignment explanation
Indices: 25894390--25894443 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
25894380 AAATACCAAT
* * *
25894390 TAGAAGAAGACCTAAGGAGGCAC
1 TAGAAGAAGACCGAAGAAAGCAC
*
25894413 TCAG-AGAAGATCGAAGAAAGCAC
1 T-AGAAGAAGACCGAAGAAAGCAC
25894436 TAGAAGAA
1 TAGAAGAA
25894444 CGTCGTCGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 2 0.08
23 21 0.84
24 2 0.08
ACGTcount: A:0.48, C:0.15, G:0.28, T:0.09
Consensus pattern (23 bp):
TAGAAGAAGACCGAAGAAAGCAC
Found at i:25899204 original size:22 final size:23
Alignment explanation
Indices: 25899161--25899206 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
25899151 CTCTCCCTCC
25899161 CACGTTCTCTCCTTCTTCCTTGTT
1 CACGTTCTCT-CTTCTTCCTTGTT
25899185 CACGTTCTCT-TTCCTT-CTTGTT
1 CACGTTCTCTCTT-CTTCCTTGTT
25899207 TCTTTCTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 8 0.38
23 3 0.14
24 10 0.48
ACGTcount: A:0.04, C:0.35, G:0.09, T:0.52
Consensus pattern (23 bp):
CACGTTCTCTCTTCTTCCTTGTT
Found at i:25899980 original size:21 final size:21
Alignment explanation
Indices: 25899956--25899995 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
25899946 AGCGTGTGTG
25899956 GCCTCCACACGGGTGTGTATA
1 GCCTCCACACGGGTGTGTATA
* *
25899977 GCCTCTACATGGGTGTGTA
1 GCCTCCACACGGGTGTGTA
25899996 GACCCCCACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.25, G:0.30, T:0.28
Consensus pattern (21 bp):
GCCTCCACACGGGTGTGTATA
Found at i:25906636 original size:16 final size:16
Alignment explanation
Indices: 25906615--25906645 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
25906605 AAAAACTTTT
25906615 GATTAGAGGTGTAATG
1 GATTAGAGGTGTAATG
25906631 GATTAGAGGTGTAAT
1 GATTAGAGGTGTAAT
25906646 AGCAAATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (16 bp):
GATTAGAGGTGTAATG
Found at i:25906853 original size:16 final size:16
Alignment explanation
Indices: 25906816--25906857 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
25906806 TTAATCATAT
*
25906816 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
25906832 TT-AAATATATTATAA
1 TTAAAATATATTATAA
25906847 TTAAAATATAT
1 TTAAAATATAT
25906858 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:25906864 original size:14 final size:15
Alignment explanation
Indices: 25906825--25906866 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
25906815 TTTAAACATA
*
25906825 ATTATTATTAAATAT
1 ATTATAATTAAATAT
25906840 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
25906854 A-TATAATTTAATA
1 ATTATAATTAAATA
25906867 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:25906916 original size:61 final size:61
Alignment explanation
Indices: 25906851--25907038 Score: 199
Period size: 61 Copynumber: 3.1 Consensus size: 61
25906841 TTATAATTAA
*
25906851 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTATTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * *
25906912 AATATATGATACT-ATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATA-TTATAATTAA
1 AATATATAAT-TTAATAAAATTATTAA-TAATCAAT-ATTCTTATATGAATTTACTCA-AATCAT
*
25906971 AATATATAATTTAATAATATTATTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTATTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
25907032 AATATAT
1 AATATAT
25907039 GATACTATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 29 0.30
60 25 0.26
61 37 0.38
62 3 0.03
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.43
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTATTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
Found at i:25906963 original size:15 final size:15
Alignment explanation
Indices: 25906935--25906993 Score: 61
Period size: 15 Copynumber: 4.0 Consensus size: 15
25906925 ATAAAATATA
25906935 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
25906950 TATTAAATATATTAT
1 AATTAAATATATTAT
25906965 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
25906978 AATTTAATAATATTAT
1 AATTAAAT-ATATTAT
25906994 TAATAATCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
13 9 0.24
14 6 0.16
15 19 0.51
16 3 0.08
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:25906964 original size:120 final size:121
Alignment explanation
Indices: 25906814--25907111 Score: 494
Period size: 120 Copynumber: 2.5 Consensus size: 121
25906804 ATTTAATCAT
* *
25906814 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATA
*
25906879 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
66 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AA
*
25906936 A-TT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAATATTATTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATA
25906999 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
66 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
* * * *
25907055 ATTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGACTTAATAAAATT
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
25907112 TAAAATAATT
Statistics
Matches: 166, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
119 3 0.02
120 158 0.95
121 4 0.02
122 1 0.01
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.42
Consensus pattern (121 bp):
ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATA
ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
Found at i:25906994 original size:44 final size:43
Alignment explanation
Indices: 25906912--25906996 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
25906902 CTCAAATCAT
* *
25906912 AATATATGATACTATAAAATATAAATTAACATAATTATTATTA
1 AATATATGATAATATAAAATATAAATTAAAATAATTATTATTA
* *
25906955 AATATATTATAAT-TAAAATATATAATT-TAATAA-TATTATTA
1 AATATATGATAATATAAAATATA-AATTAAAATAATTATTATTA
25906996 A
1 A
25906997 TAATCAATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
41 9 0.24
42 13 0.35
43 15 0.41
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.42
Consensus pattern (43 bp):
AATATATGATAATATAAAATATAAATTAAAATAATTATTATTA
Found at i:25919438 original size:126 final size:125
Alignment explanation
Indices: 25919213--25919566 Score: 548
Period size: 126 Copynumber: 2.8 Consensus size: 125
25919203 TAATTTCGAG
* * *
25919213 TTGACGTTTCTGATCAAATAGTATAAAATCGCTTCTAGCAGGATGCTACTTGGGAAGAATTTTTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTA-TTGAGAAGAATTTGTG
* * * *
25919278 AAATCGCACCCTCGTGGATGCACTTTTGCTACAGTAGGTCAC-GAAAGAAATAATTGTTTTT
65 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACAG-AAGAAATAATTATTTTT
* * *
25919339 TTGACGTTTCTGAGCAAAAAGTATAAAATCGCTTCTAGCAGGATGCTATGTAAGAAGAAATTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTAT-TGAGAAGAATTTGTG
25919404 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACAGAAGAAATAATTATTTTT
65 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACAGAAGAAATAATTATTTTT
25919465 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTA-TTGAGAAGAATTTGTG
* * *
25919530 AAATCGAGCCCTCGTAGACGAGCTTTTGCTACAGTAG
65 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
25919567 CATGTTTGGG
Statistics
Matches: 209, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
125 1 0.00
126 206 0.99
127 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (125 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTGAGAAGAATTTGTGA
AATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACAGAAGAAATAATTATTTTT
Found at i:25922786 original size:116 final size:116
Alignment explanation
Indices: 25922582--25922821 Score: 453
Period size: 116 Copynumber: 2.1 Consensus size: 116
25922572 TGATAAATTG
25922582 TATTAACTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
1 TATTAACTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
*
25922647 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
*
25922698 TATTAACTCTAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
1 TATTAACTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
*
25922763 TAGTAGCAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
25922814 TATTAACT
1 TATTAACT
25922822 TTGTTTAGGG
Statistics
Matches: 121, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
116 121 1.00
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.38
Consensus pattern (116 bp):
TATTAACTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
Found at i:25922852 original size:23 final size:23
Alignment explanation
Indices: 25922826--25923207 Score: 206
Period size: 23 Copynumber: 15.9 Consensus size: 23
25922816 TTAACTTTGT
25922826 TTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
* * *
25922849 TTAGGATTTTAAAGTT-AA--GGG
1 TTAGGGTTTTTAA-TTAAATTAGG
* **
25922870 TTAGAGTTTTTAAGTT-AA-GGGG
1 TTAGGGTTTTTAA-TTAAATTAGG
*
25922892 TTATGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
25922915 TTAGGGTTAAGGTTTTTAATTAAATTAGGTTAGAG
1 TTA--G----GGTTTTTAATT-AA--A--TTAG-G
25922950 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATT-AA--A--TTA-GG
*
25922979 TTAGGGTTTTTAATTAAAATAGG
1 TTAGGGTTTTTAATTAAATTAGG
*
25923002 GTAGGGTTTTGT-ATTAAATTAGG
1 TTAGGGTTTT-TAATTAAATTAGG
25923025 TTAGGGTTTTGT-ATTAAATTAGG
1 TTAGGGTTTT-TAATTAAATTAGG
*
25923048 TTAGGGTTTTT-A--AAGTTAAGG
1 TTAGGGTTTTTAATTAAATT-AGG
25923069 TTTAGGGTTTTTAAGTT--A--AGG
1 -TTAGGGTTTTTAA-TTAAATTAGG
25923090 TTTAGGGTTTTTAATTAAATTAGG
1 -TTAGGGTTTTTAATTAAATTAGG
*
25923114 TTAGGGTTAGGGCTTTTCATTAAATTAGG
1 TTAGGG-T-----TTTTAATTAAATTAGG
*
25923143 GTAGGGTTTTGT-ATTAAATTAGG
1 TTAGGGTTTT-TAATTAAATTAGG
*
25923166 TTAGGGTTTTT-A--AAGTTAAGG
1 TTAGGGTTTTTAATTAAATT-AGG
25923187 TTTAGGGTTTTTAATTAAATT
1 -TTAGGGTTTTTAATTAAATT
25923208 CATGGCCGCT
Statistics
Matches: 297, Mismatches: 22, Indels: 78
0.75 0.06 0.20
Matches are distributed among these distances:
20 10 0.03
21 42 0.14
22 43 0.14
23 102 0.34
24 10 0.03
25 4 0.01
26 1 0.00
28 3 0.01
29 69 0.23
30 3 0.01
32 1 0.00
33 1 0.00
34 4 0.01
35 4 0.01
ACGTcount: A:0.29, C:0.01, G:0.26, T:0.45
Consensus pattern (23 bp):
TTAGGGTTTTTAATTAAATTAGG
Found at i:25922880 original size:22 final size:22
Alignment explanation
Indices: 25922847--25922904 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
25922837 AATTAAATTA
*
25922847 GGTTAGGATTTTAAAGTTAA-G
1 GGTTAGGTTTTTAAAGTTAAGG
25922868 GGTTAGAGTTTTT-AAGTTAAGG
1 GGTTAG-GTTTTTAAAGTTAAGG
25922890 GGTTATGGTTTTTAA
1 GGTTA-GGTTTTTAA
25922905 TTAAATTAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 13 0.41
22 17 0.53
23 2 0.06
ACGTcount: A:0.28, C:0.00, G:0.29, T:0.43
Consensus pattern (22 bp):
GGTTAGGTTTTTAAAGTTAAGG
Found at i:25922908 original size:21 final size:21
Alignment explanation
Indices: 25922847--25922908 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
25922837 AATTAAATTA
*
25922847 GGTTAG-GATTTTAAAGTTAAG
1 GGTTAGAG-TTTTTAAGTTAAG
25922868 GGTTAGAGTTTTTAAGTTAAGG
1 GGTTAGAGTTTTTAAGTTAA-G
25922890 GGTTATG-GTTTTTAA-TTAA
1 GGTTA-GAGTTTTTAAGTTAA
25922909 ATTAGGTTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
21 21 0.57
22 15 0.41
23 1 0.03
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (21 bp):
GGTTAGAGTTTTTAAGTTAAG
Found at i:25922921 original size:29 final size:29
Alignment explanation
Indices: 25922889--25923150 Score: 203
Period size: 29 Copynumber: 9.2 Consensus size: 29
25922879 TTAAGTTAAG
*
25922889 GGGTTATGGTTTTTAATTAAATTAGGTTA
1 GGGTTAGGGTTTTTAATTAAATTAGGTTA
*
25922918 GGGTTAAGGTTTTTAATTAAATTAGGTTA
1 GGGTTAGGGTTTTTAATTAAATTAGGTTA
*
25922947 GAGTTAGGGTTTTTAATTAAATTAGGTTA
1 GGGTTAGGGTTTTTAATTAAATTAGGTTA
25922976 GGGTTAGGGTTTTTAATTAAA--A---TA
1 GGGTTAGGGTTTTTAATTAAATTAGGTTA
25923000 GGG-TAGGGTTTTGT-ATTAAATTAGGTTA
1 GGGTTAGGGTTTT-TAATTAAATTAGGTTA
*
25923028 GGG-T----TTTGT-ATTAAATTAGGTTA
1 GGGTTAGGGTTTTTAATTAAATTAGGTTA
** * * *
25923051 GGGTTTTTAAAGTTAAGGTTTAGGGTT--TTTAAGTTAA
1 GGG---TTAGGGTT----TTTA--ATTAAATTAGGTT-A
*
25923088 GGTTTAGGGTTTTTAATTAAATTAGGTTA
1 GGGTTAGGGTTTTTAATTAAATTAGGTTA
* * *
25923117 GGGTTAGGGCTTTTCATTAAATTAGGGTA
1 GGGTTAGGGTTTTTAATTAAATTAGGTTA
25923146 GGGTT
1 GGGTT
25923151 TTGTATTAAA
Statistics
Matches: 190, Mismatches: 19, Indels: 48
0.74 0.07 0.19
Matches are distributed among these distances:
23 33 0.17
24 9 0.05
25 1 0.01
27 2 0.01
28 8 0.04
29 106 0.56
30 10 0.05
31 2 0.01
34 6 0.03
35 2 0.01
36 6 0.03
37 3 0.02
38 2 0.01
ACGTcount: A:0.27, C:0.01, G:0.27, T:0.45
Consensus pattern (29 bp):
GGGTTAGGGTTTTTAATTAAATTAGGTTA
Found at i:25923076 original size:22 final size:22
Alignment explanation
Indices: 25923048--25923103 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
25923038 TTAAATTAGG
25923048 TTAGGGTTTTTAAAGTTAAGGT
1 TTAGGGTTTTTAAAGTTAAGGT
25923070 TTAGGGTTTTT-AAGTTAAGGT
1 TTAGGGTTTTTAAAGTTAAGGT
25923091 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
25923104 TTAAATTAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (22 bp):
TTAGGGTTTTTAAAGTTAAGGT
Found at i:25923148 original size:118 final size:111
Alignment explanation
Indices: 25922979--25923204 Score: 355
Period size: 118 Copynumber: 2.0 Consensus size: 111
25922969 TAGGTTAGGG
* *
25922979 TTAGGGTTTTTAATTAAAATAGGGTAGGGTTTTGTATTAAATTAGGTTAGGGTTTTGTATTAAAT
1 TTAGGGTTTTTAATTAAAATAGGGTAGGGTTTTGCATTAAATTAGGGTAGGGTTTTGTATTAAAT
25923044 TAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGT
66 TAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAA-TTAAGGT
25923091 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGCTTTT-CATTAAATTAGGGTAGGGTTTTGT
1 TTAGGGTTTTTAATTAAA--A---TAGGG-TAGGG-TTTTGCATTAAATTAGGGTAGGGTTTTGT
25923155 ATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAATTAA
59 ATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAATTAA
25923205 ATTCATGGCC
Statistics
Matches: 105, Mismatches: 2, Indels: 9
0.91 0.02 0.08
Matches are distributed among these distances:
112 18 0.17
114 1 0.01
117 9 0.09
118 73 0.70
119 4 0.04
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.46
Consensus pattern (111 bp):
TTAGGGTTTTTAATTAAAATAGGGTAGGGTTTTGCATTAAATTAGGGTAGGGTTTTGTATTAAAT
TAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAATTAAGGT
Found at i:25923188 original size:21 final size:20
Alignment explanation
Indices: 25923156--25923200 Score: 65
Period size: 22 Copynumber: 2.2 Consensus size: 20
25923146 GGGTTTTGTA
25923156 TTAAATTAGG-TTAGGGTTT
1 TTAAATTAGGTTTAGGGTTT
25923175 TTAAAGTTAAGGTTTAGGGTTT
1 TTAAA-TT-AGGTTTAGGGTTT
25923197 TTAA
1 TTAA
25923201 TTAAATTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.22
20 2 0.09
21 3 0.13
22 13 0.57
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (20 bp):
TTAAATTAGGTTTAGGGTTT
Found at i:25923669 original size:22 final size:22
Alignment explanation
Indices: 25923641--25923695 Score: 103
Period size: 21 Copynumber: 2.5 Consensus size: 22
25923631 GTCTGGTACA
25923641 TTAGGGTTTTTAAAGTTAAGGT
1 TTAGGGTTTTTAAAGTTAAGGT
25923663 TTAGGGTTTTT-AAGTTAAGGT
1 TTAGGGTTTTTAAAGTTAAGGT
25923684 TTAGGGTTTTTA
1 TTAGGGTTTTTA
25923696 TTTAAATTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.66
22 11 0.34
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (22 bp):
TTAGGGTTTTTAAAGTTAAGGT
Found at i:25923717 original size:29 final size:29
Alignment explanation
Indices: 25923684--25923806 Score: 167
Period size: 29 Copynumber: 4.1 Consensus size: 29
25923674 AAGTTAAGGT
*
25923684 TTAGGGTTTTTATTTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
25923713 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
*
25923742 TTAGGG-CTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
25923770 TTAAGGTTTGGGTTTTTAATTAAATTAGGTTAGGG
1 TT-A-----GGGTTTTTAATTAAATTAGGTTAGGG
25923805 TT
1 TT
25923807 TAAGGTTAAA
Statistics
Matches: 84, Mismatches: 3, Indels: 8
0.88 0.03 0.08
Matches are distributed among these distances:
28 23 0.27
29 35 0.42
34 3 0.04
35 23 0.27
ACGTcount: A:0.26, C:0.01, G:0.28, T:0.46
Consensus pattern (29 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGG
Found at i:25923744 original size:35 final size:35
Alignment explanation
Indices: 25923705--25923806 Score: 128
Period size: 35 Copynumber: 3.1 Consensus size: 35
25923695 ATTTAAATTA
25923705 GGTTAGGGTTAGGGTTTTTAATT-AA--A--TTA-
1 GGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAG
*
25923734 GGTTAGGGTTAGGG-CTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAG
* *
25923768 GGTTAAGGTTTGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAG
25923803 GGTT
1 GGTT
25923807 TAAGGTTAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
28 7 0.11
29 16 0.26
31 1 0.02
33 3 0.05
34 12 0.19
35 23 0.37
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.43
Consensus pattern (35 bp):
GGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAG
Found at i:25923761 original size:57 final size:59
Alignment explanation
Indices: 25923692--25923806 Score: 171
Period size: 63 Copynumber: 1.9 Consensus size: 59
25923682 GTTTAGGGTT
*
25923692 TTTATTTAAATTAGGTTAGGGTT-A-GGGTTTTTAATTAAATTAGGTTAGGGTTAGGGC
1 TTTAATTAAATTAGGTTAGGGTTAATGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGC
25923749 TTTAATTAAATTAGGTTAGGGTTAAGGTTTGGGTTTTTAATTAAATTAGGTTAGGGTT
1 TTTAATTAAATTAGGTTAGGGTTAA----TGGGTTTTTAATTAAATTAGGTTAGGGTT
25923807 TAAGGTTAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
57 22 0.43
58 1 0.02
63 28 0.55
ACGTcount: A:0.27, C:0.01, G:0.27, T:0.45
Consensus pattern (59 bp):
TTTAATTAAATTAGGTTAGGGTTAATGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGC
Found at i:25923805 original size:23 final size:23
Alignment explanation
Indices: 25923773--25923898 Score: 117
Period size: 23 Copynumber: 5.7 Consensus size: 23
25923763 GTTAGGGTTA
*
25923773 AGGTTTGGGTTTTTAATTAAATT
1 AGGTTAGGGTTTTTAATTAAATT
25923796 AGGTTAGGG--TTTAAGGTTAAATT
1 AGGTTAGGGTTTTTAA--TTAAATT
*
25923819 AGGTTAGGGTTTTT-A--AAGTT
1 AGGTTAGGGTTTTTAATTAAATT
*
25923839 AAGGTTTAGGGTTTTTAGTT--A--
1 -AGG-TTAGGGTTTTTAATTAAATT
25923860 AGGTTTAGGGTTTTTAATTAAATT
1 AGG-TTAGGGTTTTTAATTAAATT
25923884 AGGTTAGGGTTTTTA
1 AGGTTAGGGTTTTTA
25923899 GGATCCTCGT
Statistics
Matches: 85, Mismatches: 5, Indels: 26
0.73 0.04 0.22
Matches are distributed among these distances:
20 22 0.26
21 8 0.09
22 12 0.14
23 36 0.42
24 4 0.05
25 3 0.04
ACGTcount: A:0.26, C:0.00, G:0.27, T:0.47
Consensus pattern (23 bp):
AGGTTAGGGTTTTTAATTAAATT
Found at i:25923860 original size:20 final size:20
Alignment explanation
Indices: 25923822--25923880 Score: 91
Period size: 20 Copynumber: 2.9 Consensus size: 20
25923812 TTAAATTAGG
25923822 TTAGGGTTTTTAAAGTTAAGGT
1 TTAGGGTTTTT--AGTTAAGGT
25923844 TTAGGGTTTTTAGTTAAGGT
1 TTAGGGTTTTTAGTTAAGGT
*
25923864 TTAGGGTTTTTAATTAA
1 TTAGGGTTTTTAGTTAA
25923881 ATTAGGTTAG
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
20 25 0.69
22 11 0.31
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.49
Consensus pattern (20 bp):
TTAGGGTTTTTAGTTAAGGT
Found at i:25923971 original size:7 final size:7
Alignment explanation
Indices: 25923952--25923985 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
25923942 AAATATTAGT
25923952 TAAATAC
1 TAAATAC
25923959 -ATAATAC
1 TA-AATAC
25923966 TAAATAC
1 TAAATAC
25923973 TAAATAC
1 TAAATAC
25923980 TAAATA
1 TAAATA
25923986 TCAATCGACT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 1 0.04
7 23 0.92
8 1 0.04
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (7 bp):
TAAATAC
Found at i:25924143 original size:25 final size:25
Alignment explanation
Indices: 25924115--25924207 Score: 177
Period size: 25 Copynumber: 3.7 Consensus size: 25
25924105 AGGTTAGGGT
25924115 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
25924140 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
*
25924165 TTTTAATACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
25924190 TTTTATTACATCAAATAA
1 TTTTATTACATCAAATAA
25924208 TATCAAAATA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 66 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.43
Consensus pattern (25 bp):
TTTTATTACATCAAATAAACTTCTA
Found at i:25924243 original size:44 final size:45
Alignment explanation
Indices: 25924125--25924261 Score: 138
Period size: 50 Copynumber: 3.0 Consensus size: 45
25924115 TTTTATTACA
* *
25924125 TCAAATAAACTTCTATTTTATTACATCAAATAA-ACTTCTATTTTAAT-AC
1 TCAAATAAACTTCTATTTTATTACATAAAATAATA--TC-A---AAATAAC
*
25924174 ATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
1 -TCAAATAAACTTCTATTTTATTACATAAAATAATATCAAAATAAC
*
25924220 TCAAA-AAATTTCTATTCTT-TTACATAAAATAATATCAAAATA
1 TCAAATAAACTTCTATT-TTATTACATAAAATAATATCAAAATA
25924262 TTCAAAATAT
Statistics
Matches: 81, Mismatches: 3, Indels: 12
0.84 0.03 0.12
Matches are distributed among these distances:
44 32 0.40
45 10 0.12
46 2 0.02
48 1 0.01
49 2 0.02
50 33 0.41
51 1 0.01
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.39
Consensus pattern (45 bp):
TCAAATAAACTTCTATTTTATTACATAAAATAATATCAAAATAAC
Found at i:25925408 original size:13 final size:13
Alignment explanation
Indices: 25925390--25925414 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25925380 GGTTTAAAAA
25925390 AATTTTAAAATTT
1 AATTTTAAAATTT
25925403 AATTTTAAAATT
1 AATTTTAAAATT
25925415 ATTTAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AATTTTAAAATTT
Found at i:25925446 original size:11 final size:11
Alignment explanation
Indices: 25925430--25925471 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
25925420 AAAAATGTAG
25925430 TTAAGAGAAAC
1 TTAAGAGAAAC
*
25925441 TTAAGAGGAAC
1 TTAAGAGAAAC
*
25925452 TTAAGAAAAAC
1 TTAAGAGAAAC
25925463 TTAAGAGAA
1 TTAAGAGAA
25925472 TTTTTGAAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.55, C:0.07, G:0.19, T:0.19
Consensus pattern (11 bp):
TTAAGAGAAAC
Found at i:25925518 original size:14 final size:11
Alignment explanation
Indices: 25925475--25925508 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
25925465 AAGAGAATTT
25925475 TTGA-AGGAAA
1 TTGAGAGGAAA
25925485 TTGAGAGGAAA
1 TTGAGAGGAAA
25925496 TTGAGAGGAAA
1 TTGAGAGGAAA
25925507 TT
1 TT
25925509 TGAAAGAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 4 0.17
11 19 0.83
ACGTcount: A:0.44, C:0.00, G:0.32, T:0.24
Consensus pattern (11 bp):
TTGAGAGGAAA
Found at i:25926031 original size:43 final size:43
Alignment explanation
Indices: 25925933--25926128 Score: 188
Period size: 43 Copynumber: 4.6 Consensus size: 43
25925923 TTCCCCGAGG
* * * * *
25925933 GGTTGCTCAGCGCTGATTCCTCGAAT-TATTGATTCT-AAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATATA-TGATTGTGAAAGGT
25925975 GGTTGCTAAGTGCTGATTCCACCGTATATATGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCC-CCGTATATATGATTGTGAAAGGT
* * * * *
25926018 GGTTACTATGTGCTGATTCCCCGTATCA-CTGAATAT-AAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTAT-ATATGATTGTGAAAGGT
* *
25926060 GGTTGCTAAGTGCTGATTCCACCGTATCTTTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCC-CCGTATATATGATTGTGAAAGGT
* *
25926103 GGTTGCTATGTGGTGATTCCCCGTAT
1 GGTTGCTAAGTGCTGATTCCCCGTAT
25926129 CACTGAATTT
Statistics
Matches: 128, Mismatches: 18, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
41 5 0.04
42 53 0.41
43 58 0.45
44 12 0.09
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (43 bp):
GGTTGCTAAGTGCTGATTCCCCGTATATATGATTGTGAAAGGT
Found at i:25926073 original size:42 final size:43
Alignment explanation
Indices: 25925968--25926164 Score: 208
Period size: 43 Copynumber: 4.7 Consensus size: 43
25925958 TTATTGATTC
* *
25925968 TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTAT-ATATGATTG
1 TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCA-CTGAATG
* * *
25926011 TGAAAGG-GGTTACTATGTGCTGATTCC-CCGTATCACTGAATA
1 T-AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCACTGAATG
** *
25926053 TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTGATTG
1 TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCACTGAATG
* *
25926096 TGAAAGG-GGTTGCTATGTGGTGATTCC-CCGTATCACTGAAT-
1 T-AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCACTGAATG
* * *
25926137 TTAAGGTGGTTGCTAAGTACTGAATCCA
1 TAAAGGTGGTTGCTAAGTGCTGATTCCA
25926165 TCGAGTAACG
Statistics
Matches: 126, Mismatches: 21, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
40 4 0.03
41 22 0.17
42 40 0.32
43 50 0.40
44 10 0.08
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (43 bp):
TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCACTGAATG
Found at i:25926073 original size:85 final size:84
Alignment explanation
Indices: 25925968--25926164 Score: 322
Period size: 85 Copynumber: 2.3 Consensus size: 84
25925958 TTATTGATTC
25925968 TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATATGATTGTGAAAGGGGTTACTATGTGCTG
1 TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATATGATTGTGAAAGGGGTTACTATGTGCTG
25926033 ATTCCCCGTATCACTGAAT
66 ATTCCCCGTATCACTGAAT
* * * *
25926052 ATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTGATTGTGAAAGGGGTTGCTATGTGGT
1 -TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATATGATTGTGAAAGGGGTTACTATGTGCT
25926117 GATTCCCCGTATCACTGAAT
65 GATTCCCCGTATCACTGAAT
* * *
25926137 TTAAGGTGGTTGCTAAGTACTGAATCCA
1 TAAAGGTGGTTGCTAAGTGCTGATTCCA
25926165 TCGAGTAACG
Statistics
Matches: 105, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
84 25 0.24
85 80 0.76
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (84 bp):
TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATATGATTGTGAAAGGGGTTACTATGTGCTG
ATTCCCCGTATCACTGAAT
Found at i:25928983 original size:114 final size:114
Alignment explanation
Indices: 25928783--25929010 Score: 438
Period size: 114 Copynumber: 2.0 Consensus size: 114
25928773 AGTTATGATA
* *
25928783 TTTGGATTATTATGCTATGTAGAAATTTCGATTGTGAATTAGTGATTTGAGTTGGCATATGAATT
1 TTTGGATTATGATGCTATATAGAAATTTCGATTGTGAATTAGTGATTTGAGTTGGCATATGAATT
25928848 ATGTGTTGAGAACAAAAGTGATTAAAAGCAAATGTTTATTAAATGCTTT
66 ATGTGTTGAGAACAAAAGTGATTAAAAGCAAATGTTTATTAAATGCTTT
25928897 TTTGGATTATGATGCTATATAGAAATTTCGATTGTGAATTAGTGATTTGAGTTGGCATATGAATT
1 TTTGGATTATGATGCTATATAGAAATTTCGATTGTGAATTAGTGATTTGAGTTGGCATATGAATT
25928962 ATGTGTTGAGAACAAAAGTGATTAAAAGCAAATGTTTATTAAATGCTTT
66 ATGTGTTGAGAACAAAAGTGATTAAAAGCAAATGTTTATTAAATGCTTT
25929011 CAGAATGTGA
Statistics
Matches: 112, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
114 112 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (114 bp):
TTTGGATTATGATGCTATATAGAAATTTCGATTGTGAATTAGTGATTTGAGTTGGCATATGAATT
ATGTGTTGAGAACAAAAGTGATTAAAAGCAAATGTTTATTAAATGCTTT
Found at i:25942811 original size:26 final size:26
Alignment explanation
Indices: 25942775--25942824 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
25942765 TTGGATAAAA
25942775 AGGGGTCGCTAAGTGCAGATTCCCCG
1 AGGGGTCGCTAAGTGCAGATTCCCCG
* **
25942801 AGGGGTTGCTAAGTGTTGATTCCC
1 AGGGGTCGCTAAGTGCAGATTCCC
25942825 TGAATTATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.18, C:0.22, G:0.34, T:0.26
Consensus pattern (26 bp):
AGGGGTCGCTAAGTGCAGATTCCCCG
Found at i:25942935 original size:42 final size:42
Alignment explanation
Indices: 25942839--25943030 Score: 142
Period size: 43 Copynumber: 4.5 Consensus size: 42
25942829 TTATTGATTT
* * * *
25942839 TAAAGGTGGTTGCTAAGTGTTGATTCCACCGTAT-ATTTAATTG
1 TAAAGGTGGTTGCTAAGTGCTGATTTC-CCGTATCA-CTAAATG
* *
25942882 TGAAAGG-GGTTGCTACGTGCTGATTTCCCGTATCACTAAATA
1 T-AAAGGTGGTTGCTAAGTGCTGATTTCCCGTATCACTAAATG
** * *
25942924 TAAAGGTGGTTGCTAAGTGCTGA-TTCCATCGTATCTTTGATTG
1 TAAAGGTGGTTGCTAAGTGCTGATTTCC--CGTATCACTAAATG
* * * *
25942967 TGAAAGG-GGTTGCTATGTGGTGATTTCTCGTATCACTGAAT-
1 T-AAAGGTGGTTGCTAAGTGCTGATTTCCCGTATCACTAAATG
* * *
25943008 TTAAGTTGGTTGCTAAATGCTGA
1 TAAAGGTGGTTGCTAAGTGCTGA
25943031 ATCCACCGAG
Statistics
Matches: 118, Mismatches: 23, Indels: 18
0.74 0.14 0.11
Matches are distributed among these distances:
40 3 0.03
41 23 0.19
42 36 0.31
43 43 0.36
44 13 0.11
ACGTcount: A:0.24, C:0.14, G:0.26, T:0.37
Consensus pattern (42 bp):
TAAAGGTGGTTGCTAAGTGCTGATTTCCCGTATCACTAAATG
Found at i:25942948 original size:85 final size:84
Alignment explanation
Indices: 25942838--25943038 Score: 285
Period size: 85 Copynumber: 2.4 Consensus size: 84
25942828 ATTATTGATT
*
25942838 TTAAAGGTGGTTGCTAAGTGTTGATTCCACCGTATATTTAATTGTGAAAGGGGTTGCTACGTGCT
1 TTAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATTTAATTGTGAAAGGGGTTGCTACGTGCT
25942903 GATTTCCCGTATCACTAAA
66 GATTTCCCGTATCACTAAA
* * * * *
25942922 TATAAAGGTGGTTGCTAAGTGCTGATTCCATCGTATCTTTGATTGTGAAAGGGGTTGCTATGTGG
1 T-TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATTTAATTGTGAAAGGGGTTGCTACGTGC
* *
25942987 TGATTTCTCGTATCACTGAA
65 TGATTTCCCGTATCACTAAA
* * * *
25943007 TTTAAGTTGGTTGCTAAATGCTGAATCCACCG
1 TTAAAGGTGGTTGCTAAGTGCTGATTCCACCG
25943039 AGTAACGGAT
Statistics
Matches: 103, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
84 27 0.26
85 76 0.74
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (84 bp):
TTAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATATTTAATTGTGAAAGGGGTTGCTACGTGCT
GATTTCCCGTATCACTAAA
Found at i:25942978 original size:43 final size:42
Alignment explanation
Indices: 25942801--25943000 Score: 158
Period size: 42 Copynumber: 4.7 Consensus size: 42
25942791 AGATTCCCCG
* * * *
25942801 AGGGGTTGCTAAGTGTTGATTCC-CTGAAT-TATTGATT-TTAA
1 AGGGGTTGCTAAGTGCTGATTCCTC-GTATCT-TTAATTGTGAA
* * *
25942842 AGGTGGTTGCTAAGTGTTGATTCCACCGTATATTTAATTGTGAA
1 AGG-GGTTGCTAAGTGCTGATTCC-TCGTATCTTTAATTGTGAA
* ** * *
25942886 AGGGGTTGCTACGTGCTGATTTCC-CGTATCACTAAATAT-AA
1 AGGGGTTGCTAAGTGCTGA-TTCCTCGTATCTTTAATTGTGAA
*
25942927 AGGTGGTTGCTAAGTGCTGATTCCATCGTATCTTTGATTGTGAA
1 AGG-GGTTGCTAAGTGCTGATTCC-TCGTATCTTTAATTGTGAA
* * *
25942971 AGGGGTTGCTATGTGGTGATTTCTCGTATC
1 AGGGGTTGCTAAGTGCTGATTCCTCGTATC
25943001 ACTGAATTTA
Statistics
Matches: 130, Mismatches: 19, Indels: 19
0.77 0.11 0.11
Matches are distributed among these distances:
41 12 0.09
42 52 0.40
43 49 0.38
44 17 0.13
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.38
Consensus pattern (42 bp):
AGGGGTTGCTAAGTGCTGATTCCTCGTATCTTTAATTGTGAA
Found at i:25946691 original size:21 final size:21
Alignment explanation
Indices: 25946667--25946706 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
25946657 AATGGAAAAA
25946667 TAAAGAAAAGA-AAAAGAAAGT
1 TAAA-AAAAGATAAAAGAAAGT
*
25946688 TAAAAAAATATAAAAGAAA
1 TAAAAAAAGATAAAAGAAA
25946707 AAAATTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.12
Consensus pattern (21 bp):
TAAAAAAAGATAAAAGAAAGT
Found at i:25952006 original size:8 final size:7
Alignment explanation
Indices: 25951970--25952009 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
25951960 ACAGATGTGA
25951970 TTTTAG-
1 TTTTAGT
25951976 TTTTAG-
1 TTTTAGT
*
25951982 TTTTGGT
1 TTTTAGT
25951989 TTTTAGT
1 TTTTAGT
25951996 TTTTAGT
1 TTTTAGT
25952003 TTTTAGT
1 TTTTAGT
25952010 AATGTTATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 11 0.35
7 20 0.65
ACGTcount: A:0.12, C:0.00, G:0.17, T:0.70
Consensus pattern (7 bp):
TTTTAGT
Found at i:25955667 original size:21 final size:21
Alignment explanation
Indices: 25955632--25955681 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
25955622 AAATTAAATT
*
25955632 TAATATTTTTCATAA-AGATAAA
1 TAATA-TTATCATAAGA-ATAAA
25955654 TAATATTATCATAAGAATAAA
1 TAATATTATCATAAGAATAAA
*
25955675 TATTATT
1 TAATATT
25955682 TAATTTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 19 0.76
22 6 0.24
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (21 bp):
TAATATTATCATAAGAATAAA
Found at i:25956131 original size:25 final size:27
Alignment explanation
Indices: 25956103--25956164 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 27
25956093 ATATGTATAA
25956103 ATTATATAAATAA-GTAATA-AATTTT
1 ATTATATAAATAATGTAATATAATTTT
* * *
25956128 ATTAT-GAAATAATTTAATATATTTTT
1 ATTATATAAATAATGTAATATAATTTT
25956154 ATATATATAAA
1 AT-TATATAAA
25956165 GAAAAGGTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
24 6 0.21
25 10 0.34
26 7 0.24
27 3 0.10
28 3 0.10
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (27 bp):
ATTATATAAATAATGTAATATAATTTT
Found at i:25959249 original size:16 final size:16
Alignment explanation
Indices: 25959228--25959261 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
25959218 CCAATATCCA
* *
25959228 ATTATCATATTTGCAC
1 ATTATCACATTTACAC
25959244 ATTATCACATTTACAC
1 ATTATCACATTTACAC
25959260 AT
1 AT
25959262 ATATATTCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
ATTATCACATTTACAC
Found at i:25963280 original size:174 final size:175
Alignment explanation
Indices: 25962989--25963319 Score: 499
Period size: 174 Copynumber: 1.9 Consensus size: 175
25962979 TCTACAATCG
* * * *
25962989 CTATTTAAATATTGTTTCTCAAAACTAATAAATTCATATAACTAATGTAAAAGCCTCTTCAACGT
1 CTATTTAAATATTGTTTCTCAAAACTAATAAATTCATAAAAATAATGTAAAAGACTCGTCAACGT
*
25963054 GGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACGCTGAAGGTCTCCGGTTCGAATCCGG
66 GGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTGAAGGTCTCCGGTTCGAATCCGG
*
25963119 GGGAAACCAT-T-CATACAGAATATATTTCTGATTTTGTACATTTAA
131 GCGAAACCATGTAC-T-CAGAATATATTTCTGATTTTGTACATTTAA
* * **
25963164 CTATTTACATATTGTTTCTCAAAACTAATAAATTCATAAAAA-ATATGTTAAAGACT-GTCGTCG
1 CTATTTAAATATTGTTTCTCAAAACTAATAAATTCATAAAAATA-ATGTAAAAGACTCGTCAACG
*
25963227 TGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTGAAGGTCTCCGGTTCGAGTCCG
65 TGGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTGAAGGTCTCCGGTTCGAATCCG
*
25963292 GGCGAAGCCATGTACTCAGAATATATTT
130 GGCGAAACCATGTACTCAGAATATATTT
25963320 TGTTTCATTT
Statistics
Matches: 141, Mismatches: 12, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
174 89 0.63
175 51 0.36
176 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (175 bp):
CTATTTAAATATTGTTTCTCAAAACTAATAAATTCATAAAAATAATGTAAAAGACTCGTCAACGT
GGTTTCGTGGTGTAGTTGGTTATCACGTCAGTCTAACACACTGAAGGTCTCCGGTTCGAATCCGG
GCGAAACCATGTACTCAGAATATATTTCTGATTTTGTACATTTAA
Found at i:25963814 original size:20 final size:20
Alignment explanation
Indices: 25963789--25963828 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
25963779 CGAGAATCAG
25963789 TTTAAAGTTTGGGTAAGCAA
1 TTTAAAGTTTGGGTAAGCAA
25963809 TTTAAAGTTTGGGTAAGCAA
1 TTTAAAGTTTGGGTAAGCAA
25963829 AACCTAATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (20 bp):
TTTAAAGTTTGGGTAAGCAA
Found at i:25964964 original size:11 final size:11
Alignment explanation
Indices: 25964950--25964981 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
25964940 GAGTATTTTA
25964950 TTATATTTATT
1 TTATATTTATT
25964961 TTATATTTATT
1 TTATATTTATT
25964972 TTATATTTAT
1 TTATATTTAT
25964982 ACTATTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATATTTATT
Found at i:25964969 original size:6 final size:6
Alignment explanation
Indices: 25964950--25964982 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
25964940 GAGTATTTTA
25964950 TTATAT TTAT-T TTATAT TTAT-T TTATAT TTATA
1 TTATAT TTATAT TTATAT TTATAT TTATAT TTATA
25964983 CTATTATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
TTATAT
Found at i:25971713 original size:23 final size:24
Alignment explanation
Indices: 25971679--25971731 Score: 74
Period size: 23 Copynumber: 2.2 Consensus size: 24
25971669 ATAGAAAAAA
*
25971679 TAAAAATGAAAAA-TATATATTTTT
1 TAAAAATGAAAAATTATA-AGTTTT
25971703 TAAAAAT-AAAAATTATAAGTTTT
1 TAAAAATGAAAAATTATAAGTTTT
25971726 TAAAAA
1 TAAAAA
25971732 ATATAAATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 16 0.59
24 11 0.41
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (24 bp):
TAAAAATGAAAAATTATAAGTTTT
Found at i:25971732 original size:24 final size:24
Alignment explanation
Indices: 25971680--25971739 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
25971670 TAGAAAAAAT
*
25971680 AAAAATGAAAAA-TATATATTTTTT
1 AAAAAT-AAAAATTATATATTTTTA
25971704 AAAAATAAAAATTATA-AGTTTTTA
1 AAAAATAAAAATTATATA-TTTTTA
*
25971728 AAAAATATAAAT
1 AAAAATAAAAAT
25971740 GATTTTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 6 0.19
24 26 0.81
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (24 bp):
AAAAATAAAAATTATATATTTTTA
Found at i:25972508 original size:31 final size:31
Alignment explanation
Indices: 25972473--25972534 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
25972463 AAGTAGTAAA
25972473 CACATGTAATAAATAACAGAATACTAAAGAT
1 CACATGTAATAAATAACAGAATACTAAAGAT
*
25972504 CACATGTAATAAATAATAGAATACTAAAGAT
1 CACATGTAATAAATAACAGAATACTAAAGAT
25972535 TTGAGCCATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.55, C:0.11, G:0.10, T:0.24
Consensus pattern (31 bp):
CACATGTAATAAATAACAGAATACTAAAGAT
Found at i:25974135 original size:17 final size:17
Alignment explanation
Indices: 25974113--25974145 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
25974103 TATAACGATT
*
25974113 ATACTAATTATATCTAA
1 ATACTAAGTATATCTAA
25974130 ATACTAAGTATATCTA
1 ATACTAAGTATATCTA
25974146 TGCGAGTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.12, G:0.03, T:0.39
Consensus pattern (17 bp):
ATACTAAGTATATCTAA
Found at i:25979441 original size:424 final size:424
Alignment explanation
Indices: 25978653--25979501 Score: 1664
Period size: 424 Copynumber: 2.0 Consensus size: 424
25978643 CTTCTCCATG
25978653 ATGAACGAAAATAGCAAGGGGGAAGCCATGGTTAGGGTTTTCAAGCTTCCAAGCCCCATAGTAAG
1 ATGAACGAAAATAGCAAGGGGGAAGCCATGGTTAGGGTTTTCAAGCTTCCAAGCCCCATAGTAAG
*
25978718 TGATTCTAAGCCCCATTTTTAATGTTCTTTACGTTTTTGAAGTCCTAGTAGCTTAATTTAGCTTA
66 TGATTCCAAGCCCCATTTTTAATGTTCTTTACGTTTTTGAAGTCCTAGTAGCTTAATTTAGCTTA
25978783 TTCTAGCAATAATTTAACCTAAGGTTTATATTTGGAAAATACCCATAGGTGAAATGTGTTTATTT
131 TTCTAGCAATAATTTAACCTAAGGTTTATATTTGGAAAATACCCATAGGTGAAATGTGTTTATTT
*
25978848 TGATGTTTTATGGTAGAATATGAAGCTTTAAATTGTGTTAAACAATTTTTGCTAAGCGATTTTCA
196 TGATGTTTTATGGTAGAATATGAAGCTTGAAATTGTGTTAAACAATTTTTGCTAAGCGATTTTCA
25978913 GTGAAAACAAGTGAAACGGCATAATCGGTAAAAATTATTATTGTTCATAAGTGCATGTTAGATGA
261 GTGAAAACAAGTGAAACGGCATAATCGGTAAAAATTATTATTGTTCATAAGTGCATGTTAGATGA
25978978 AGAATTTGATGTTTCTATAGAAGGGAAAAATGTTCAGCATGTTATAAAACATAAGAAAAAGGAAT
326 AGAATTTGATGTTTCTATAGAAGGGAAAAATGTTCAGCATGTTATAAAACATAAGAAAAAGGAAT
25979043 AAAGTTTAATTTCTGAGCCTAGGGACAAAATCGT
391 AAAGTTTAATTTCTGAGCCTAGGGACAAAATCGT
25979077 ATGAACGAAAATAGCAAGGGGGAAGCCATGGTTAGGGTTTTCAAGCTTCCAAGCCCCATAGTAAG
1 ATGAACGAAAATAGCAAGGGGGAAGCCATGGTTAGGGTTTTCAAGCTTCCAAGCCCCATAGTAAG
25979142 TGATTCCAAGCCCCATTTTTAATGTTCTTTACGTTTTTGAAGTCCTAGTAGCTTAATTTAGCTTA
66 TGATTCCAAGCCCCATTTTTAATGTTCTTTACGTTTTTGAAGTCCTAGTAGCTTAATTTAGCTTA
25979207 TTCTAGCAATAATTTAACCTAAGGTTTATATTTGGAAAATACCCATAGGTGAAATGTGTTTATTT
131 TTCTAGCAATAATTTAACCTAAGGTTTATATTTGGAAAATACCCATAGGTGAAATGTGTTTATTT
25979272 TGATGTTTTATGGTAGAATATGAAGCTTGAAATTGTGTTAAACAATTTTTGCTAAGCGATTTTCA
196 TGATGTTTTATGGTAGAATATGAAGCTTGAAATTGTGTTAAACAATTTTTGCTAAGCGATTTTCA
25979337 GTGAAAACAAGTGAAACGGCATAATCGGTAAAAATTATTATTGTTCATAAGTGCATGTTAGA-GC
261 GTGAAAACAAGTGAAACGGCATAATCGGTAAAAATTATTATTGTTCATAAGTGCATGTTAGATG-
25979401 AAGAATTTGATGTTTCTATAGAAGGGAAAAATGTTCAGCATGTTATAAAACATAAGAAAAAGGAA
325 AAGAATTTGATGTTTCTATAGAAGGGAAAAATGTTCAGCATGTTATAAAACATAAGAAAAAGGAA
25979466 TAAAGTTTAATTTCTGAGCCTAGGGACAAAATCGT
390 TAAAGTTTAATTTCTGAGCCTAGGGACAAAATCGT
25979501 A
1 A
25979502 ATTTTGTGAA
Statistics
Matches: 422, Mismatches: 2, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
423 1 0.00
424 421 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.34
Consensus pattern (424 bp):
ATGAACGAAAATAGCAAGGGGGAAGCCATGGTTAGGGTTTTCAAGCTTCCAAGCCCCATAGTAAG
TGATTCCAAGCCCCATTTTTAATGTTCTTTACGTTTTTGAAGTCCTAGTAGCTTAATTTAGCTTA
TTCTAGCAATAATTTAACCTAAGGTTTATATTTGGAAAATACCCATAGGTGAAATGTGTTTATTT
TGATGTTTTATGGTAGAATATGAAGCTTGAAATTGTGTTAAACAATTTTTGCTAAGCGATTTTCA
GTGAAAACAAGTGAAACGGCATAATCGGTAAAAATTATTATTGTTCATAAGTGCATGTTAGATGA
AGAATTTGATGTTTCTATAGAAGGGAAAAATGTTCAGCATGTTATAAAACATAAGAAAAAGGAAT
AAAGTTTAATTTCTGAGCCTAGGGACAAAATCGT
Found at i:25979554 original size:17 final size:16
Alignment explanation
Indices: 25979521--25979552 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
25979511 AACTTTAGGG
25979521 GCAAAAATGTAATTTT
1 GCAAAAATGTAATTTT
*
25979537 GCAAAAATGTGATTTT
1 GCAAAAATGTAATTTT
25979553 TGGACTGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.38
Consensus pattern (16 bp):
GCAAAAATGTAATTTT
Found at i:25979838 original size:51 final size:51
Alignment explanation
Indices: 25979712--25979997 Score: 176
Period size: 51 Copynumber: 5.6 Consensus size: 51
25979702 AGTTGCTAGG
* * * * *
25979712 TCACGTTTGTAGTACTATGCGCAGGCTACTACGTGTA-CTGGAAT-G-ATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCT-GAATAGCATA-A
* * * *
25979762 TCGCATGTATAGTACTATGTGCAGGCTACTATGCGTA-CTGAATAGCTTCAA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCTGAATAGCAT-AA
** * ** **
25979813 TCACGTGTGTAGTACTATGTGCAGGCTACTA--CGTATATCGGATGAAAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCT-GAAT-AGCATAA
* * * * * * *
25979864 TCATGTGTGTAGTATTATGTGTAGGCTACTACGTGTACCGGAAT-G-ATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCTGAATAGCATA-A
* * * * * * *
25979914 TCGCATGTGCAGTACTATGTGTAGGCTACTATGCGTA-CTGGATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCTGAATAGCAT-AA
25979965 TCACGTGTGTAGTACTATGTGCAGGCTACTATG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATG
25979998 TGAACCGAGT
Statistics
Matches: 179, Mismatches: 45, Indels: 23
0.72 0.18 0.09
Matches are distributed among these distances:
49 14 0.08
50 66 0.37
51 90 0.50
52 6 0.03
53 3 0.02
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (51 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCTGAATAGCATAA
Found at i:25979986 original size:152 final size:152
Alignment explanation
Indices: 25979710--25979995 Score: 473
Period size: 152 Copynumber: 1.9 Consensus size: 152
25979700 GAAGTTGCTA
* * *
25979710 GGTCACGTTTGTAGTACTATGCGCAGGCTACTACGTGTACTGGAATGATAGGTCGCATGTATAGT
1 GGTCACGTGTGTAGTACTATGCGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTACAGT
25979775 ACTATGTGCAGGCTACTATGCGTACTGAATAGCTTCAATCACGTGTGTAGTACTATGTGCAGGCT
66 ACTATGTGCAGGCTACTATGCGTACTGAATAGCTTCAATCACGTGTGTAGTACTATGTGCAGGCT
25979840 ACTACGTATATCGGATGAAAAT
131 ACTACGTATATCGGATGAAAAT
* * * * *
25979862 GGTCATGTGTGTAGTATTATGTGTAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGCAGT
1 GGTCACGTGTGTAGTACTATGCGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTACAGT
* * *
25979927 ACTATGTGTAGGCTACTATGCGTACTGGATAGCTTCGATCACGTGTGTAGTACTATGTGCAGGCT
66 ACTATGTGCAGGCTACTATGCGTACTGAATAGCTTCAATCACGTGTGTAGTACTATGTGCAGGCT
25979992 ACTA
131 ACTA
25979996 TGTGAACCGA
Statistics
Matches: 123, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
152 123 1.00
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (152 bp):
GGTCACGTGTGTAGTACTATGCGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTACAGT
ACTATGTGCAGGCTACTATGCGTACTGAATAGCTTCAATCACGTGTGTAGTACTATGTGCAGGCT
ACTACGTATATCGGATGAAAAT
Found at i:25983064 original size:19 final size:19
Alignment explanation
Indices: 25983036--25983072 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
25983026 AATTGAATTA
25983036 ATTTTTATAATTT-TTTTT
1 ATTTTTATAATTTATTTTT
25983054 ATTTTTGATAATTTATTTT
1 ATTTTT-ATAATTTATTTT
25983073 CTATGAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 7 0.41
20 4 0.24
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (19 bp):
ATTTTTATAATTTATTTTT
Found at i:25983326 original size:10 final size:11
Alignment explanation
Indices: 25983298--25983328 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
25983288 ATTTTTGTTT
25983298 ATATTTTTAAA
1 ATATTTTTAAA
25983309 ATATTTTTAAA
1 ATATTTTTAAA
25983320 ATATTTTTA
1 ATATTTTTA
25983329 TTTTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (11 bp):
ATATTTTTAAA
Found at i:25983337 original size:24 final size:24
Alignment explanation
Indices: 25983310--25983364 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
25983300 ATTTTTAAAA
**
25983310 TATTTTTAAAATATTT-TTATTTTT
1 TATTTTTAAAAT-TTTAAAATTTTT
25983334 TATTTTTAAAATTTTAAAATTTTT
1 TATTTTTAAAATTTTAAAATTTTT
25983358 TATTTTT
1 TATTTTT
25983365 TTCCAAAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 3 0.11
24 25 0.89
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (24 bp):
TATTTTTAAAATTTTAAAATTTTT
Found at i:25983361 original size:31 final size:32
Alignment explanation
Indices: 25983279--25983365 Score: 101
Period size: 31 Copynumber: 2.8 Consensus size: 32
25983269 AGATAACATT
* *
25983279 AAATTTT-AAA-TTTTT-GTTTATATTTTTAA
1 AAATTTTAAAATTTTTTATTTTTTATTTTTAA
25983308 AATATTTTTAAAATATTTTTATTTTTTATTTTT-A
1 AA-A-TTTTAAAAT-TTTTTATTTTTTATTTTTAA
25983342 AAATTTTAAAATTTTTTATTTTTT
1 AAATTTTAAAATTTTTTATTTTTT
25983366 TCCAAAAGTT
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
29 2 0.04
30 1 0.02
31 16 0.32
32 12 0.24
33 1 0.02
34 8 0.16
35 10 0.20
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (32 bp):
AAATTTTAAAATTTTTTATTTTTTATTTTTAA
Found at i:25983405 original size:22 final size:23
Alignment explanation
Indices: 25983379--25983422 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
25983369 AAAAGTTTTA
25983379 TTTAAAAAAATAT-ATTTTTAAT
1 TTTAAAAAAATATAATTTTTAAT
**
25983401 TTTAAAAAGTTATAATTTTTAA
1 TTTAAAAAAATATAATTTTTAA
25983423 AATTTTTATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
TTTAAAAAAATATAATTTTTAAT
Found at i:25986760 original size:121 final size:122
Alignment explanation
Indices: 25986473--25986765 Score: 518
Period size: 122 Copynumber: 2.4 Consensus size: 122
25986463 CAAACTTTAG
*
25986473 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTA
*
25986538 TTATATATTATGATTTTAGTAAATTAATATAAGAATATATTTAATATTAAAAATTTT
66 TTATATATTATGATTTTAGTAAATTAATATAAGAATATATCTAATATTAAAAATTTT
*
25986595 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTCTAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTA
* *
25986660 TTATATATTATGATTTTAGTAATTTAATATTAAG-A-ATATCTAATATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTAATA-TAAGAATATATCTAATATTAAAAATTTT
25986716 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAA
25986766 ATATGATTAA
Statistics
Matches: 165, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
121 69 0.42
122 92 0.56
123 4 0.02
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (122 bp):
ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTA
TTATATATTATGATTTTAGTAAATTAATATAAGAATATATCTAATATTAAAAATTTT
Found at i:25986838 original size:121 final size:115
Alignment explanation
Indices: 25986473--25986824 Score: 361
Period size: 122 Copynumber: 2.9 Consensus size: 115
25986463 CAAACTTTAG
* *
25986473 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAA-TATA-TTT-TAGAA
* * * *
25986538 TTATATATTATGATTTTAGTAAATTAATATAAGAATATATTTAA-TATTAAAAATTTT
63 TTATATATTATGATTTTAGT-AATTTAT-TAA-AAT-TA-ATAACAATAAAAAATTTT
*
25986595 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTCTAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAA-TATA-TTT-TAGAA
* * * * *
25986660 TTATATATTATGATTTTAGTAATTTAATATTAA-GAATATCTAATATTAAGAATTTT
63 TTATATATTATGATTTTAGTAATTTATTA-AAATTAATAAC-AATA--AAAAATTTT
*
25986716 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAA-ATATGATTA-AATT
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATATAT-TTTAGAATT
* * *
25986779 ATTTATTACTGATATTAATAATCTTATTAAAATTTAATAACAATAA
65 ATATATTA-TGATTTTAGTAAT-TTATTAAAA-TTAATAACAATAA
25986825 CAATAATTAT
Statistics
Matches: 200, Mismatches: 20, Indels: 25
0.82 0.08 0.10
Matches are distributed among these distances:
117 13 0.06
118 17 0.09
119 15 0.08
120 9 0.05
121 63 0.31
122 83 0.41
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (115 bp):
ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATATATTTTAGAATTA
TATATTATGATTTTAGTAATTTATTAAAATTAATAACAATAAAAAATTTT
Found at i:25987036 original size:20 final size:20
Alignment explanation
Indices: 25987011--25987052 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
25987001 TTATGCCTCT
25987011 ATTTCAATACAGCGAAGCAA
1 ATTTCAATACAGCGAAGCAA
*
25987031 ATTTCAATACAGCTAAGCAA
1 ATTTCAATACAGCGAAGCAA
25987051 AT
1 AT
25987053 GTGCCATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.45, C:0.19, G:0.12, T:0.24
Consensus pattern (20 bp):
ATTTCAATACAGCGAAGCAA
Found at i:25994736 original size:22 final size:22
Alignment explanation
Indices: 25994708--25994757 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
25994698 ACAAATCCTA
25994708 TCTCAATTTCCTTCCAAAATCC
1 TCTCAATTTCCTTCCAAAATCC
*
25994730 TCTCAATTTCCTTCCAAAATTC
1 TCTCAATTTCCTTCCAAAATCC
25994752 TCTCAA
1 TCTCAA
25994758 ACTCTCAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.28, C:0.34, G:0.00, T:0.38
Consensus pattern (22 bp):
TCTCAATTTCCTTCCAAAATCC
Found at i:25994791 original size:52 final size:52
Alignment explanation
Indices: 25994708--25994810 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 52
25994698 ACAAATCCTA
*
25994708 TCTCAATTTCCTTCCAAAATCCTCTCAATTTCCTTCCAAAATTCTCTCAAAC
1 TCTCAATTTCCTTCCAAAATCCTCTCAATTTCCTTCCAAAAATCTCTCAAAC
* *
25994760 TCTCAATTTCCTTCCAAAATCCTGTCGATTTCCTTCCAAAAATCTCTCAAA
1 TCTCAATTTCCTTCCAAAATCCTCTCAATTTCCTTCCAAAAATCTCTCAAA
25994811 TCCATATTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.29, C:0.33, G:0.02, T:0.36
Consensus pattern (52 bp):
TCTCAATTTCCTTCCAAAATCCTCTCAATTTCCTTCCAAAAATCTCTCAAAC
Found at i:25994878 original size:31 final size:31
Alignment explanation
Indices: 25994843--25994909 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
25994833 CCTCAATTTC
25994843 ATTTTTTTAAAATAATTTTAAATTTTTTAAT
1 ATTTTTTTAAAATAATTTTAAATTTTTTAAT
*
25994874 ATTTTTTTAAAATAATTTTAAATTTTTTTAT
1 ATTTTTTTAAAATAATTTTAAATTTTTTAAT
25994905 ATTTT
1 ATTTT
25994910 CATCAATGGC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (31 bp):
ATTTTTTTAAAATAATTTTAAATTTTTTAAT
Found at i:25996808 original size:30 final size:30
Alignment explanation
Indices: 25996723--25996976 Score: 370
Period size: 30 Copynumber: 8.4 Consensus size: 30
25996713 AAAGGCGCAG
25996723 TTAATTAAAAACCCT-AACCCTAACCTAAT
1 TTAATTAAAAACCCTAAACCCTAACCTAAT
*
25996752 TTAATTAAAAACCCTAAACCTTAACCCTATCCTAAT
1 TTAATTAAAAACCCT--A----AACCCTAACCTAAT
*
25996788 TTAATTAAAAACCATAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAAACCCTAACCTAAT
25996818 TTAATTAAAAACCCT-AACCCTAACCTAAT
1 TTAATTAAAAACCCTAAACCCTAACCTAAT
25996847 TTAATTAAAAACCCTAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAAACCCTAACCTAAT
*
25996877 TTAATTAAAAACCTTAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAAACCCTAACCTAAT
* *
25996907 TTAATTAAAAACCCTAAACCGTAACTTAAT
1 TTAATTAAAAACCCTAAACCCTAACCTAAT
* *
25996937 TTAAGTAAAAACCCT-AACCCTAACTTAAT
1 TTAATTAAAAACCCTAAACCCTAACCTAAT
25996966 TTAATTAAAAA
1 TTAATTAAAAA
25996977 TCCTCAACGA
Statistics
Matches: 206, Mismatches: 11, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
29 67 0.33
30 111 0.54
34 1 0.00
36 27 0.13
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.29
Consensus pattern (30 bp):
TTAATTAAAAACCCTAAACCCTAACCTAAT
Found at i:25996836 original size:59 final size:59
Alignment explanation
Indices: 25996767--25996976 Score: 339
Period size: 59 Copynumber: 3.5 Consensus size: 59
25996757 TAAAAACCCT
* * *
25996767 AAACCTTAACCCTATCCTAATTTAATTAAAAACCATAAACCCTAACCTAATTTAATTAA
1 AAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAA
25996826 AAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAA
1 AAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAA
* * * *
25996885 AAACCTTAAACCCTAACCTAATTTAATTAAAAACCCTAAACCGTAACTTAATTTAAGTAA
1 AAACCCT-AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAA
*
25996945 AAACCCTAACCCTAACTTAATTTAATTAAAAA
1 AAACCCTAACCCTAACCTAATTTAATTAAAAA
25996977 TCCTCAACGA
Statistics
Matches: 141, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
59 86 0.61
60 55 0.39
ACGTcount: A:0.47, C:0.24, G:0.01, T:0.29
Consensus pattern (59 bp):
AAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAA
Found at i:25996889 original size:89 final size:89
Alignment explanation
Indices: 25996723--25996976 Score: 384
Period size: 89 Copynumber: 2.8 Consensus size: 89
25996713 AAAGGCGCAG
*
25996723 TTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCTTAACCCTATCCTAAT
1 TTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT--A----AACCCTAACCTAAT
25996788 TTAATTAAAAACCATAAACCCTAACCTAAT
60 TTAATTAAAAACCATAAACCCTAACCTAAT
25996818 TTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATT
1 TTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATT
*
25996883 AAAAACCTTAAACCCTAACCTAAT
66 AAAAACCATAAACCCTAACCTAAT
* * * *
25996907 TTAATTAAAAACCCTAAACCGTAACTTAATTTAAGTAAAAACCCT-AACCCTAACTTAATTTAAT
1 TTAATTAAAAACCCT-AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAAT
25996971 TAAAAA
65 TAAAAA
25996977 TCCTCAACGA
Statistics
Matches: 152, Mismatches: 6, Indels: 8
0.92 0.04 0.05
Matches are distributed among these distances:
89 81 0.53
90 26 0.17
93 1 0.01
95 44 0.29
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.29
Consensus pattern (89 bp):
TTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATT
AAAAACCATAAACCCTAACCTAAT
Found at i:25997578 original size:49 final size:49
Alignment explanation
Indices: 25997506--25997669 Score: 310
Period size: 49 Copynumber: 3.3 Consensus size: 49
25997496 AACCGTCGAN
25997506 TAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTGATGTAA
1 TAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTGATGTAA
25997555 TAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTGATGTAA
1 TAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTGATGTAA
* *
25997604 TAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTCATTTAA
1 TAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTGATGTAA
25997653 TAAAATACAAAATAGTT
1 TAAAATACAAAATAGTT
25997670 AATATTCTTA
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 113 1.00
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.46
Consensus pattern (49 bp):
TAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTGATGTAA
Found at i:26011278 original size:15 final size:15
Alignment explanation
Indices: 26011258--26011289 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
26011248 AAAAGAAAAT
26011258 TATCATTAATCAAAG
1 TATCATTAATCAAAG
26011273 TATCATTAATCAAAG
1 TATCATTAATCAAAG
26011288 TA
1 TA
26011290 GCTCTACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.34
Consensus pattern (15 bp):
TATCATTAATCAAAG
Found at i:26013746 original size:22 final size:22
Alignment explanation
Indices: 26013718--26013763 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
26013708 TTTTCTGAGC
* *
26013718 TTTCAGGGTTTTAGCGGCATTT
1 TTTCAGGGCTTTACCGGCATTT
*
26013740 TTTCAGGGCTTTACCGGCGTTT
1 TTTCAGGGCTTTACCGGCATTT
26013762 TT
1 TT
26013764 GGGAAAGCGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.11, C:0.17, G:0.26, T:0.46
Consensus pattern (22 bp):
TTTCAGGGCTTTACCGGCATTT
Found at i:26013806 original size:41 final size:41
Alignment explanation
Indices: 26013742--26013928 Score: 270
Period size: 41 Copynumber: 4.6 Consensus size: 41
26013732 CGGCATTTTT
* *
26013742 TCAGGGCTTTACCGGCGTTTTTGGGAAAGCGCCGCTAATGA
1 TCAGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGA
* * *
26013783 TTAGGCCTTTAGCGGCGTGTTTGGAAAAGCGCCGCTAATGA
1 TCAGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGA
26013824 TCAGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGA
1 TCAGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGA
* * *
26013865 TCAGAGATTTAGCGGCGTTTTT-GAGTAAGCGCCGCTAAT-A
1 TCAGGGCTTTAGCGGCGTTTTTGGA-AAAGCGCCGCTAATGA
26013905 CTCAGGGCTTTAGCGGCGTTTTTG
1 -TCAGGGCTTTAGCGGCGTTTTTG
26013929 AAGTAGAGCC
Statistics
Matches: 130, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
40 3 0.02
41 127 0.98
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (41 bp):
TCAGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGA
Found at i:26013991 original size:81 final size:82
Alignment explanation
Indices: 26013742--26013997 Score: 266
Period size: 82 Copynumber: 3.1 Consensus size: 82
26013732 CGGCATTTTT
* * * * * * *
26013742 TCAGGGCTTTACCGGCGTTTTTGGGAAAGCGCCGCTAATGATTAG-GCCTTTAGCGGCGTGTTTG
1 TCAGGGCTTTAGCGGCGTTTTTGGAAAAGAGCCGCTAATGATCAGAG-ATTTAGCGGCGTTTTTA
* *
26013806 GAAAAGCGCCGCTAATGA
65 AAAAAGCGCCGCTAATGC
* *
26013824 TCAGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGATCAGAGATTTAGCGGCGTTTTTGA
1 TCAGGGCTTTAGCGGCGTTTTTGGAAAAGAGCCGCTAATGATCAGAGATTTAGCGGCGTTTTTAA
** *
26013889 GTAAGCGCCGCTAATAC
66 AAAAGCGCCGCTAATGC
* ** * ** *
26013906 TCAGGGCTTTAGCGGCGTTTTT-GAAGTAGAGCCGCTAATTCTC-TATTTTTAGTGGCGTTTTTA
1 TCAGGGCTTTAGCGGCGTTTTTGGAA-AAGAGCCGCTAATGATCAGAGATTTAGCGGCGTTTTTA
*
26013969 AAAAAGCGCTGCTAATGC
65 AAAAAGCGCCGCTAATGC
*
26013987 TCAGGGATTTA
1 TCAGGGCTTTA
26013998 ATATAATCTA
Statistics
Matches: 148, Mismatches: 24, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
81 42 0.28
82 105 0.71
83 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (82 bp):
TCAGGGCTTTAGCGGCGTTTTTGGAAAAGAGCCGCTAATGATCAGAGATTTAGCGGCGTTTTTAA
AAAAGCGCCGCTAATGC
Found at i:26014982 original size:7 final size:7
Alignment explanation
Indices: 26014972--26015009 Score: 58
Period size: 7 Copynumber: 5.3 Consensus size: 7
26014962 TATGGTTTAA
26014972 GGGTTAG
1 GGGTTAG
26014979 GGGTTAG
1 GGGTTAG
26014986 GGGTTAG
1 GGGTTAG
*
26014993 GGGATAG
1 GGGTTAG
26015000 GGGTTTAG
1 GGG-TTAG
26015008 GG
1 GG
26015010 TTTATGTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
7 23 0.82
8 5 0.18
ACGTcount: A:0.16, C:0.00, G:0.58, T:0.26
Consensus pattern (7 bp):
GGGTTAG
Found at i:26015843 original size:14 final size:15
Alignment explanation
Indices: 26015815--26015849 Score: 63
Period size: 14 Copynumber: 2.4 Consensus size: 15
26015805 AATCAATTGT
26015815 AAAGATGAGGGGGGG
1 AAAGATGAGGGGGGG
26015830 AAAGATGA-GGGGGG
1 AAAGATGAGGGGGGG
26015844 AAAGAT
1 AAAGAT
26015850 ATTTCAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.40, C:0.00, G:0.51, T:0.09
Consensus pattern (15 bp):
AAAGATGAGGGGGGG
Found at i:26017967 original size:5 final size:5
Alignment explanation
Indices: 26017959--26017985 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
26017949 ATATTTTACC
26017959 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
26017986 AACAAGAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:26018992 original size:43 final size:43
Alignment explanation
Indices: 26018848--26018992 Score: 191
Period size: 43 Copynumber: 3.4 Consensus size: 43
26018838 CGGAAAAAAT
* * * *
26018848 GCCGCTAAAGGCCAGGACCTTTAGCGGCGCTTTTCTCACAAAT
1 GCCGCTAAAGACCAGAACCTTTAGCGGCGCTTTTCCCACAAAC
* * * *
26018891 GTCGCTAAAGATCAGGACCTTTAGCGGCGCTTTTTCCACAAAC
1 GCCGCTAAAGACCAGAACCTTTAGCGGCGCTTTTCCCACAAAC
* *
26018934 ACCGCTGAAGACCAGAACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGACCAGAACCTTTAGCGGCGCTTTTCCCACAAAC
*
26018977 GCCACTAAAGACCAGA
1 GCCGCTAAAGACCAGA
26018993 CTCCCCAAAA
Statistics
Matches: 87, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 87 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.21
Consensus pattern (43 bp):
GCCGCTAAAGACCAGAACCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:26019838 original size:39 final size:40
Alignment explanation
Indices: 26019751--26019851 Score: 118
Period size: 39 Copynumber: 2.6 Consensus size: 40
26019741 CGTTTGGATA
* * *
26019751 AAAAAT-GCCACTAAAAATAAGCATTAGCGGCGCTTTTTG
1 AAAAATCGCCGCTAAAAATAAGCATTACCGGCGCTTTTTC
* *
26019790 GAAAA-CGCCGCTAAAGATAAGCATTACCGGCG-TTTTTC
1 AAAAATCGCCGCTAAAAATAAGCATTACCGGCGCTTTTTC
*
26019828 AAAAATCGCCGCAAAAAACTAAGC
1 AAAAATCGCCGCTAAAAA-TAAGC
26019852 CAAACGACGT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
38 9 0.18
39 37 0.73
40 5 0.10
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.21
Consensus pattern (40 bp):
AAAAATCGCCGCTAAAAATAAGCATTACCGGCGCTTTTTC
Found at i:26019937 original size:41 final size:41
Alignment explanation
Indices: 26019880--26020122 Score: 378
Period size: 41 Copynumber: 5.9 Consensus size: 41
26019870 GAGTTTTTGA
* *
26019880 GGCCTTTAGCGGCGTTTTTGAAAAAGTGCCGCTAATTCTCG
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCG
*
26019921 GGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTCG
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCG
* * * *
26019962 GGCTTTTAGCGGCGTTTGTGAAGAAGCGCCACTAATGCTCG
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCG
* *
26020003 GGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATACTCG
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCG
* * *
26020044 GGCCTTTAGCGGTGTTTTTTAAAAAGCGCCGCTAATGCTTG
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCG
26020085 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
26020123 CCGCTTTTGA
Statistics
Matches: 183, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 183 1.00
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.30
Consensus pattern (41 bp):
GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCG
Found at i:26020504 original size:14 final size:14
Alignment explanation
Indices: 26020487--26020523 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
26020477 GGGTTTAATA
26020487 TATATGGTTTAGGG
1 TATATGGTTTAGGG
*
26020501 TATATGATTTAGGG
1 TATATGGTTTAGGG
26020515 TATATGGTT
1 TATATGGTT
26020524 AATTTAGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (14 bp):
TATATGGTTTAGGG
Found at i:26020600 original size:14 final size:14
Alignment explanation
Indices: 26020581--26020612 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
26020571 AGATTATGGA
26020581 ATTAGGGATTCTGG
1 ATTAGGGATTCTGG
26020595 ATTAGGGATTCTGG
1 ATTAGGGATTCTGG
26020609 ATTA
1 ATTA
26020613 AGGGTTGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.25, C:0.06, G:0.31, T:0.38
Consensus pattern (14 bp):
ATTAGGGATTCTGG
Found at i:26020845 original size:7 final size:7
Alignment explanation
Indices: 26020822--26020866 Score: 63
Period size: 7 Copynumber: 6.4 Consensus size: 7
26020812 TAAATAAGAT
26020822 TTAGGGG
1 TTAGGGG
**
26020829 TTAGTAG
1 TTAGGGG
26020836 TTAGGGG
1 TTAGGGG
26020843 TTAGGGG
1 TTAGGGG
*
26020850 TTAAGGG
1 TTAGGGG
26020857 TTAGGGG
1 TTAGGGG
26020864 TTA
1 TTA
26020867 AAGGTTAGAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.20, C:0.00, G:0.47, T:0.33
Consensus pattern (7 bp):
TTAGGGG
Found at i:26020867 original size:14 final size:14
Alignment explanation
Indices: 26020835--26020874 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
26020825 GGGGTTAGTA
*
26020835 GTTAGGGGTTAGGG
1 GTTAAGGGTTAGGG
26020849 GTTAAGGGTTAGGG
1 GTTAAGGGTTAGGG
*
26020863 GTTAAAGGTTAG
1 GTTAAGGGTTAG
26020875 AGATTAAGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.23, C:0.00, G:0.47, T:0.30
Consensus pattern (14 bp):
GTTAAGGGTTAGGG
Found at i:26021383 original size:13 final size:13
Alignment explanation
Indices: 26021365--26021391 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26021355 ATAAATAAAT
26021365 AAATTAATGTAAC
1 AAATTAATGTAAC
26021378 AAATTAATGTAAC
1 AAATTAATGTAAC
26021391 A
1 A
26021392 GATTGACAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.30
Consensus pattern (13 bp):
AAATTAATGTAAC
Found at i:26024762 original size:43 final size:43
Alignment explanation
Indices: 26024702--26024792 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
26024692 CTTTGAGTTC
* * * *
26024702 ATTA-CAAGATTTCCTTGATTAAGTAAATGTATTATATCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
*
26024744 ATTACCAAGATTTACTTGATTAAGAAAATGCATTGTATATTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
26024787 ATTACC
1 ATTACC
26024793 TTGCATATGT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 4 0.09
43 39 0.91
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.44
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
Found at i:26025140 original size:43 final size:42
Alignment explanation
Indices: 26025066--26025291 Score: 235
Period size: 42 Copynumber: 5.3 Consensus size: 42
26025056 AAGATATATT
* ** *
26025066 TTTAGCGGCGGTTGTGTTAAAAGCGCTGCTAAAGGTCTAT-TC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCT-TGTC
* * * *
26025108 TATAGCGGCGTTTGTGGGAAAAAGCGCCGCTAAAGCT-TAATATT
1 TTTAGCGGCGTTTGTGGG-AAAAGCGCCGCTAAAGGTCT--TGTC
**
26025152 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGATC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTG-TC
*
26025195 TTTAGCGGCGTTTGTGGG-GAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTT-GTC
* *
26025237 TTTAGCGGCGTTTGTGGG-AAAGAGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC-TTGTC
*
26025279 TTTAGCAGCGTTT
1 TTTAGCGGCGTTT
26025292 ATTTATAAAA
Statistics
Matches: 157, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
42 86 0.55
43 54 0.34
44 17 0.11
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (42 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGTC
Done.