Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 90 of 205
Found at i:26236639 original size:37 final size:37
Alignment explanation
Indices: 26236589--26236742 Score: 265
Period size: 37 Copynumber: 4.2 Consensus size: 37
26236579 NNNNNNNNNN
26236589 GTAGTCATCGGGTCTTACCCGGACAAAATCTCCACAC
1 GTAGTCATCGGGTCTTACCCGGACAAAATCTCCACAC
26236626 GTAGTCATCGGGTCTTACCCGGACAAAATCTCCACAC
1 GTAGTCATCGGGTCTTACCCGGACAAAATCTCCACAC
** *
26236663 GTAGTCATCGGGTCTTACCAAGACATAATCTCCACAC
1 GTAGTCATCGGGTCTTACCCGGACAAAATCTCCACAC
26236700 GTAGTCATCGGGTCTTACCCGGACATAAA-CTCCACAC
1 GTAGTCATCGGGTCTTACCCGGACA-AAATCTCCACAC
26236737 GTAGTC
1 GTAGTC
26236743 CTCCCCCCCC
Statistics
Matches: 110, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
37 108 0.98
38 2 0.02
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
GTAGTCATCGGGTCTTACCCGGACAAAATCTCCACAC
Found at i:26243652 original size:39 final size:39
Alignment explanation
Indices: 26243609--26243788 Score: 254
Period size: 39 Copynumber: 4.6 Consensus size: 39
26243599 CATATTCACT
* * * *
26243609 TTTAAGCATGTATCACATTACACATATAATCACACCAA-A
1 TTTAAGCATATATCACAATACTCATATAATCACA-TAACA
* * *
26243648 TTTAACCATATTTCACAATTCTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
26243687 TTTAAGCATATATCACAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
*
26243726 TTTAATCATATATCACAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* *
26243765 TTCAAACATATATCACAATACTCA
1 TTTAAGCATATATCACAATACTCA
26243789 AAACCATGTT
Statistics
Matches: 127, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
38 2 0.02
39 125 0.98
ACGTcount: A:0.44, C:0.22, G:0.02, T:0.32
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCATATAATCACATAACA
Found at i:26243720 original size:17 final size:17
Alignment explanation
Indices: 26243693--26243759 Score: 57
Period size: 17 Copynumber: 3.7 Consensus size: 17
26243683 AACATTTAAG
26243693 CATAT-ATCACAATACT
1 CATATAATCACAATACT
26243709 CATATAATCAC-ATAACATTT
1 CATATAATCACAAT-AC---T
*
26243729 AATCATATATCACAATACT
1 CAT-ATA-ATCACAATACT
26243748 CATATAATCACA
1 CATATAATCACA
26243760 TAACATTCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 15
0.71 0.03 0.26
Matches are distributed among these distances:
16 7 0.17
17 13 0.32
18 3 0.07
19 3 0.07
20 3 0.07
21 3 0.07
22 7 0.17
23 2 0.05
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.31
Consensus pattern (17 bp):
CATATAATCACAATACT
Found at i:26245716 original size:71 final size:70
Alignment explanation
Indices: 26245591--26245804 Score: 227
Period size: 71 Copynumber: 3.0 Consensus size: 70
26245581 AGGATGTGAC
* ** * *
26245591 ATGAGTGTGTCCAGCACTAGTCGGTATAATTGACAAATAAATGCATCTTGCGCTGGTCGATAAAA
1 ATGAGTGTG-CCAGCACTAGTCGGTATAACTGACAAATAAATGCGCCCTACGCTGGTCGATAAAA
26245656 TCAACA
65 TCAACA
* * * *
26245662 ATGAGTGTGCCTAGCACT-GATCGGTATAACTGATAAATAAATGTGCCCTACGCTGGT-TAGCAA
1 ATGAGTGTGCC-AGCACTAG-TCGGTATAACTGACAAATAAATGCGCCCTACGCTGGTCGA-TAA
*
26245725 AAGCGAA-A
63 AATC-AACA
* * *
26245733 ATGAGTGTGCCCAGCACTAGTCAGTATAACCGACAAATAAATGCGCCCTACGTTGGTCGATAAAA
1 ATGAGTGTG-CCAGCACTAGTCGGTATAACTGACAAATAAATGCGCCCTACGCTGGTCGATAAAA
*
26245798 TCGACA
65 TCAACA
26245804 A
1 A
26245805 ATAAATGCTC
Statistics
Matches: 116, Mismatches: 19, Indels: 16
0.77 0.13 0.11
Matches are distributed among these distances:
70 5 0.04
71 105 0.91
72 6 0.05
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (70 bp):
ATGAGTGTGCCAGCACTAGTCGGTATAACTGACAAATAAATGCGCCCTACGCTGGTCGATAAAAT
CAACA
Found at i:26246378 original size:105 final size:105
Alignment explanation
Indices: 26246191--26246407 Score: 317
Period size: 105 Copynumber: 2.1 Consensus size: 105
26246181 TCAGATATAA
* * **
26246191 CCAGCTTTGGAAAAACACTTATTCACTTATAATATCAACATCAAAATCAACATAAGTATTTATCT
1 CCAGCTTTGGAAAAACACTTATTCACCTATAATACCAACATCAAAATCAACATAAACATTTATCT
*
26246256 AATCCTAACACTTAATTTAGCATAAACATAATAGAAATGT
66 AATCCTAACACTTAATTTAACATAAACATAATAGAAATGT
* * ** * * *
26246296 CCAGTTTTGGAAAAACACTTATTCGCCTATAATACCAGTATTAAAATCGACATAAACATTTATTT
1 CCAGCTTTGGAAAAACACTTATTCACCTATAATACCAACATCAAAATCAACATAAACATTTATCT
*
26246361 AATCCTAACATTTAATTTAACATAAACATAATAGAAATGT
66 AATCCTAACACTTAATTTAACATAAACATAATAGAAATGT
26246401 CCAGCTT
1 CCAGCTT
26246408 GGGCAACACT
Statistics
Matches: 98, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
105 98 1.00
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.32
Consensus pattern (105 bp):
CCAGCTTTGGAAAAACACTTATTCACCTATAATACCAACATCAAAATCAACATAAACATTTATCT
AATCCTAACACTTAATTTAACATAAACATAATAGAAATGT
Found at i:26246388 original size:18 final size:17
Alignment explanation
Indices: 26246345--26246389 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
26246335 ATTAAAATCG
26246345 ACATAAACATTTATTTA
1 ACATAAACATTTATTTA
*
26246362 ATCCT-AACATTTAATTTA
1 A-CATAAACATTT-ATTTA
26246380 ACATAAACAT
1 ACATAAACAT
26246390 AATAGAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.38
Consensus pattern (17 bp):
ACATAAACATTTATTTA
Found at i:26246443 original size:23 final size:23
Alignment explanation
Indices: 26246406--26246498 Score: 89
Period size: 23 Copynumber: 4.1 Consensus size: 23
26246396 AATGTCCAGC
* * *
26246406 TTGGGCAACACTTAAAACATGCT
1 TTGGACAACATTTAAAACATACT
** *
26246429 TTGGATGACATTTAAAACATATT
1 TTGGACAACATTTAAAACATACT
*
26246452 TTGGACAACATTTAAAACTTACT
1 TTGGACAACATTTAAAACATACT
* * *
26246475 CT-GACAGCATTTGAAACATACT
1 TTGGACAACATTTAAAACATACT
26246497 TT
1 TT
26246499 TTCTATCATT
Statistics
Matches: 55, Mismatches: 15, Indels: 1
0.77 0.21 0.01
Matches are distributed among these distances:
22 18 0.33
23 37 0.67
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (23 bp):
TTGGACAACATTTAAAACATACT
Found at i:26247394 original size:22 final size:20
Alignment explanation
Indices: 26247369--26247409 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
26247359 TTATTTTCCC
*
26247369 TCTTCTTTCATTTTCTTTTTTT
1 TCTTC-TTC-TTTTCCTTTTTT
26247391 TCTTCTTCTTTTCCTTTTT
1 TCTTCTTCTTTTCCTTTTT
26247410 ACTTCCTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 3 0.17
22 5 0.28
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (20 bp):
TCTTCTTCTTTTCCTTTTTT
Found at i:26254184 original size:38 final size:38
Alignment explanation
Indices: 26254142--26254216 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
26254132 CATTGTCAAA
* *
26254142 TTTTAACAATAATAAAAATTACAACATGGGTCAACTAG
1 TTTTAACAATAACAAAAATTACAACATGAGTCAACTAG
* *
26254180 TTTTAATAATAACAAAAATTATAACATGAGTCAACTA
1 TTTTAACAATAACAAAAATTACAACATGAGTCAACTA
26254217 ATTTATAGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.49, C:0.12, G:0.08, T:0.31
Consensus pattern (38 bp):
TTTTAACAATAACAAAAATTACAACATGAGTCAACTAG
Found at i:26262613 original size:23 final size:24
Alignment explanation
Indices: 26262578--26262639 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 24
26262568 AAATAACAAT
26262578 AATAAATACAACAATGAAAT-A-GA
1 AATAAATA-AACAATGAAATAAGGA
26262601 AATAATATAAAC-AT-AAATAAGGA
1 AATAA-ATAAACAATGAAATAAGGA
*
26262624 AAAAAATAAACAATGA
1 AATAAATAAACAATGA
26262640 CATGTAATGT
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
21 4 0.12
22 9 0.27
23 16 0.48
24 4 0.12
ACGTcount: A:0.68, C:0.06, G:0.08, T:0.18
Consensus pattern (24 bp):
AATAAATAAACAATGAAATAAGGA
Found at i:26264001 original size:37 final size:38
Alignment explanation
Indices: 26263951--26264041 Score: 112
Period size: 37 Copynumber: 2.4 Consensus size: 38
26263941 TCCACATTAC
* * **
26263951 GTGGTGTGCAGGGTGGATGAACCTATTATGGTTC-TAT
1 GTGGTGTGCAGGGTGGACGAACCTATTATAGCCCTTAT
* * *
26263988 GTGGTGTGCAGGGTAGACGAGCCTTTTATAGCCCTTAT
1 GTGGTGTGCAGGGTGGACGAACCTATTATAGCCCTTAT
26264026 GTGGTGTGCAGGGTGG
1 GTGGTGTGCAGGGTGG
26264042 TCAAATGGTG
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
37 27 0.60
38 18 0.40
ACGTcount: A:0.16, C:0.13, G:0.38, T:0.32
Consensus pattern (38 bp):
GTGGTGTGCAGGGTGGACGAACCTATTATAGCCCTTAT
Found at i:26269500 original size:251 final size:251
Alignment explanation
Indices: 26269057--26269557 Score: 1002
Period size: 251 Copynumber: 2.0 Consensus size: 251
26269047 GTTGTCAAGT
26269057 CCCTTGAGTCTTCGAGGGATGAAATTTTAGCTTCATACCTCTCTGGTAGAGTGGTCATGACCTTC
1 CCCTTGAGTCTTCGAGGGATGAAATTTTAGCTTCATACCTCTCTGGTAGAGTGGTCATGACCTTC
26269122 TCAACTATTCTAGCTTCACTGAACTGTTCTCTAATGAGCCTTACACTGTTTACAATAGCCATAAT
66 TCAACTATTCTAGCTTCACTGAACTGTTCTCTAATGAGCCTTACACTGTTTACAATAGCCATAAT
26269187 TCGATCTGAATACTGCTTGATTGTTTCTTCCTCTTTCATTTTGAGATTTTCAAAATCCCTTCTCA
131 TCGATCTGAATACTGCTTGATTGTTTCTTCCTCTTTCATTTTGAGATTTTCAAAATCCCTTCTCA
26269252 AGTTGAGCAGCTGTTGTTGCCTTGTTCTCTCAGTCCCCTAAAATTCTCCTTTCAAC
196 AGTTGAGCAGCTGTTGTTGCCTTGTTCTCTCAGTCCCCTAAAATTCTCCTTTCAAC
26269308 CCCTTGAGTCTTCGAGGGATGAAATTTTAGCTTCATACCTCTCTGGTAGAGTGGTCATGACCTTC
1 CCCTTGAGTCTTCGAGGGATGAAATTTTAGCTTCATACCTCTCTGGTAGAGTGGTCATGACCTTC
26269373 TCAACTATTCTAGCTTCACTGAACTGTTCTCTAATGAGCCTTACACTGTTTACAATAGCCATAAT
66 TCAACTATTCTAGCTTCACTGAACTGTTCTCTAATGAGCCTTACACTGTTTACAATAGCCATAAT
26269438 TCGATCTGAATACTGCTTGATTGTTTCTTCCTCTTTCATTTTGAGATTTTCAAAATCCCTTCTCA
131 TCGATCTGAATACTGCTTGATTGTTTCTTCCTCTTTCATTTTGAGATTTTCAAAATCCCTTCTCA
26269503 AGTTGAGCAGCTGTTGTTGCCTTGTTCTCTCAGTCCCCTAAAATTCTCCTTTCAA
196 AGTTGAGCAGCTGTTGTTGCCTTGTTCTCTCAGTCCCCTAAAATTCTCCTTTCAA
26269558 TTTGTCCCAA
Statistics
Matches: 250, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
251 250 1.00
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (251 bp):
CCCTTGAGTCTTCGAGGGATGAAATTTTAGCTTCATACCTCTCTGGTAGAGTGGTCATGACCTTC
TCAACTATTCTAGCTTCACTGAACTGTTCTCTAATGAGCCTTACACTGTTTACAATAGCCATAAT
TCGATCTGAATACTGCTTGATTGTTTCTTCCTCTTTCATTTTGAGATTTTCAAAATCCCTTCTCA
AGTTGAGCAGCTGTTGTTGCCTTGTTCTCTCAGTCCCCTAAAATTCTCCTTTCAAC
Found at i:26270111 original size:226 final size:226
Alignment explanation
Indices: 26269717--26270167 Score: 875
Period size: 226 Copynumber: 2.0 Consensus size: 226
26269707 GAAGAGGTGT
26269717 TGGCTCAGCATCTGAGTTAACAACTTCCCATAGGTCGAATGCCTGCAGGTAAGTCCTCATCATAA
1 TGGCTCAGCATCTGAGTTAACAACTTCCCATAGGTCGAATGCCTGCAGGTAAGTCCTCATCATAA
26269782 CTGCCCAAATGTTGAAGCCCTCTCCATTGAAGACAGGTGGTGAAGCTGGTGAAAAACCTGATGAT
66 CTGCCCAAATGTTGAAGCCCTCTCCATTGAAGACAGGTGGTGAAGCTGGTGAAAAACCTGATGAT
26269847 GCCATGGTTTTGATACTGAACTACAACAGGTCCTCTAAGAATATGGCTCTAGATACCAATTGTTG
131 GCCATGGTTTTGATACTGAACTACAACAGGTCCTCTAAGAATATGGCTCTAGATACCAATTGTTG
26269912 GAGCCGAGAGCAACAAATAGCAAGTTCAACC
196 GAGCCGAGAGCAACAAATAGCAAGTTCAACC
*
26269943 TGGCTCAGCATCTGAGTTAACAACTTCCCATAGGTCGAATGCCTGCAGGTAAGTCCTCATCTTAA
1 TGGCTCAGCATCTGAGTTAACAACTTCCCATAGGTCGAATGCCTGCAGGTAAGTCCTCATCATAA
26270008 CTGCCCAAATGTTGAAGCCCTCTCCATTGAAGACAGGTGGTGAAGCTGGTGAAAAACCTGATGAT
66 CTGCCCAAATGTTGAAGCCCTCTCCATTGAAGACAGGTGGTGAAGCTGGTGAAAAACCTGATGAT
* *
26270073 GCCATGGTTTTGTTACTGAACTACAATAGGTCCTCTAAGAATATGGCTCTAGATACCAATTGTTG
131 GCCATGGTTTTGATACTGAACTACAACAGGTCCTCTAAGAATATGGCTCTAGATACCAATTGTTG
26270138 GAGCCGAGAGCAACAAATAGCAAGTTCAAC
196 GAGCCGAGAGCAACAAATAGCAAGTTCAAC
26270168 AAGAAGCTTG
Statistics
Matches: 222, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
226 222 1.00
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (226 bp):
TGGCTCAGCATCTGAGTTAACAACTTCCCATAGGTCGAATGCCTGCAGGTAAGTCCTCATCATAA
CTGCCCAAATGTTGAAGCCCTCTCCATTGAAGACAGGTGGTGAAGCTGGTGAAAAACCTGATGAT
GCCATGGTTTTGATACTGAACTACAACAGGTCCTCTAAGAATATGGCTCTAGATACCAATTGTTG
GAGCCGAGAGCAACAAATAGCAAGTTCAACC
Found at i:26270864 original size:28 final size:27
Alignment explanation
Indices: 26270805--26270912 Score: 144
Period size: 27 Copynumber: 4.0 Consensus size: 27
26270795 TGAACATCTT
* *
26270805 TAACTCTAATCTCAGCTTCTCATTCTC
1 TAACTCCAATATCAGCTTCTCATTCTC
* *
26270832 TAACTCCAATATCAACTTTTCATTTCTC
1 TAACTCCAATATCAGCTTCTCA-TTCTC
*
26270860 TAACTCCCATATCAGCTTCTCATTCTC
1 TAACTCCAATATCAGCTTCTCATTCTC
* *
26270887 TAACTCCAATCTCAGCCTCTCATTCT
1 TAACTCCAATATCAGCTTCTCATTCT
26270913 GGTGCAACAA
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
27 46 0.66
28 24 0.34
ACGTcount: A:0.24, C:0.34, G:0.03, T:0.39
Consensus pattern (27 bp):
TAACTCCAATATCAGCTTCTCATTCTC
Found at i:26271047 original size:93 final size:93
Alignment explanation
Indices: 26270888--26271097 Score: 285
Period size: 93 Copynumber: 2.3 Consensus size: 93
26270878 CTCATTCTCT
* * * *
26270888 AACTCCAATCTCAGCCTCTCATTCTGGTGCAACAATTGTTCTTTTTCGTTGATCACTTGAATCAA
1 AACTCCAATCTCAGCCTCGCATTCCGGTGCAACAATTGCTCTTCTTCGTTGATCACTTGAATCAA
* * * *
26270953 TTCCAAGTTCTGTTCCCTTTGACACTCA
66 TTCCAAATTCTATTCCATTTCACACTCA
* * * *
26270981 AACTCAAATCTCATCCTCGCATTCCGGTGCAATAATTGCTCTTCTTCGTTGATCGCTTGAATCAA
1 AACTCCAATCTCAGCCTCGCATTCCGGTGCAACAATTGCTCTTCTTCGTTGATCACTTGAATCAA
* * *
26271046 TTTCAAATTCTATTCCATTTCACGCTCT
66 TTCCAAATTCTATTCCATTTCACACTCA
26271074 AACTCCAATCTCAGCCTCGCATTC
1 AACTCCAATCTCAGCCTCGCATTC
26271098 TCCTTCTCCA
Statistics
Matches: 100, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
93 100 1.00
ACGTcount: A:0.23, C:0.30, G:0.11, T:0.36
Consensus pattern (93 bp):
AACTCCAATCTCAGCCTCGCATTCCGGTGCAACAATTGCTCTTCTTCGTTGATCACTTGAATCAA
TTCCAAATTCTATTCCATTTCACACTCA
Found at i:26272571 original size:24 final size:23
Alignment explanation
Indices: 26272544--26272613 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 23
26272534 TGCATAATGC
26272544 TATATATATTGTTATGTAATATTT
1 TATATATATT-TTATGTAATATTT
26272568 TATA-ATAGTTTGTATGT-AT-TTT
1 TATATATA-TTT-TATGTAATATTT
*
26272590 TATATATATAATTATG-AATATTT
1 TATATATAT-TTTATGTAATATTT
26272613 T
1 T
26272614 TCACTTATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 13
0.74 0.02 0.25
Matches are distributed among these distances:
22 14 0.36
23 14 0.36
24 11 0.28
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (23 bp):
TATATATATTTTATGTAATATTT
Found at i:26273613 original size:37 final size:36
Alignment explanation
Indices: 26273570--26273639 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 36
26273560 TAATTAGTTT
* *
26273570 TTTTATATTTTTAATG-ATTTTTAATTTTTAAAAATAG
1 TTTTATATTTTT--TGAAATTTTAAATTTTAAAAATAG
26273607 TTTTATATTTTTTGAAATTTTAAATTTTAAAAA
1 TTTTATATTTTTTGAAATTTTAAATTTTAAAAA
26273640 ATTAATTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
35 2 0.07
36 16 0.53
37 12 0.40
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (36 bp):
TTTTATATTTTTTGAAATTTTAAATTTTAAAAATAG
Found at i:26273640 original size:37 final size:36
Alignment explanation
Indices: 26273570--26273641 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 36
26273560 TAATTAGTTT
* *
26273570 TTTTATATTTTTAATGATTTTTAATTTTTAAAAATAG
1 TTTTATATTTTTAA-GATTTTAAATTTTAAAAAATAG
26273607 TTTTATATTTTTTGAA-ATTTTAAATTTTAAAAAAT
1 TTTTATA-TTTTT-AAGATTTTAAATTTTAAAAAAT
26273642 TAATTAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
37 24 0.77
38 5 0.16
39 2 0.06
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (36 bp):
TTTTATATTTTTAAGATTTTAAATTTTAAAAAATAG
Found at i:26283490 original size:36 final size:39
Alignment explanation
Indices: 26283445--26283531 Score: 108
Period size: 39 Copynumber: 2.3 Consensus size: 39
26283435 GGAGTTGTAA
* * *
26283445 GTGACTATTCATCTATATCAC-T-AA-ATGCTAGGAGTT
1 GTGACTATTCATCTACATAACTTAAATATGATAGGAGTT
* *
26283481 GTGACTATTCATTTACATAACTTAAATATTATAGGAGTT
1 GTGACTATTCATCTACATAACTTAAATATGATAGGAGTT
26283520 GTGACTATTCAT
1 GTGACTATTCAT
26283532 GCATGTGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
36 18 0.42
37 1 0.02
38 2 0.05
39 22 0.51
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (39 bp):
GTGACTATTCATCTACATAACTTAAATATGATAGGAGTT
Found at i:26283573 original size:23 final size:23
Alignment explanation
Indices: 26283547--26283590 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
26283537 TGTGTAACTT
* *
26283547 TTCAGCTTCAAGTCTCTTCACTC
1 TTCAGATTCAAGTCTATTCACTC
*
26283570 TTCATATTCAAGTCTATTCAC
1 TTCAGATTCAAGTCTATTCAC
26283591 ATTTCTAACT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.23, C:0.30, G:0.07, T:0.41
Consensus pattern (23 bp):
TTCAGATTCAAGTCTATTCACTC
Found at i:26288573 original size:578 final size:578
Alignment explanation
Indices: 26287478--26288632 Score: 2310
Period size: 578 Copynumber: 2.0 Consensus size: 578
26287468 CTTGTTTTGT
26287478 CGTGGTGGCACAAGCTATTTTTTCCCAAGCCGCTTCATATGATTGAACTCCTTGATATATCCAAA
1 CGTGGTGGCACAAGCTATTTTTTCCCAAGCCGCTTCATATGATTGAACTCCTTGATATATCCAAA
26287543 ATAAGGCTTGTTGATTTTTCTTCCTTAATTTTCTTAAACTCTCTTTTTGAACTTGTGTTAATCCT
66 ATAAGGCTTGTTGATTTTTCTTCCTTAATTTTCTTAAACTCTCTTTTTGAACTTGTGTTAATCCT
26287608 TCCTCCTCTTCAGCCTCAACTTCATTATAACCTTTTTCAACAATCTCCCAAACTTTTAGAGATCC
131 TCCTCCTCTTCAGCCTCAACTTCATTATAACCTTTTTCAACAATCTCCCAAACTTTTAGAGATCC
26287673 AAAAAGAGCCTTCATTTGGATACTCCATTTGCCATAATTTTCTTTGGTTAATTGGGGAACAGAGG
196 AAAAAGAGCCTTCATTTGGATACTCCATTTGCCATAATTTTCTTTGGTTAATTGGGGAACAGAGG
26287738 AAAGAGAAATAGAATTGTTCATTTCGATCAAAAATAGCTCTGATACCAATTTGTAAAAGATTGAT
261 AAAGAGAAATAGAATTGTTCATTTCGATCAAAAATAGCTCTGATACCAATTTGTAAAAGATTGAT
26287803 TAATATTTGGAGAAATAAAAAAAAAGAAAATGATAAAGAATATAATGGAGAAGAGAAATAAATTT
326 TAATATTTGGAGAAATAAAAAAAAAGAAAATGATAAAGAATATAATGGAGAAGAGAAATAAATTT
26287868 TGTATGGAAGAAATAAAATTCTTTCTAATAAAATTTTTATTTCAATCACACAATTAAAAATTCTT
391 TGTATGGAAGAAATAAAATTCTTTCTAATAAAATTTTTATTTCAATCACACAATTAAAAATTCTT
26287933 CATCACATACAACTCTTTATATAGGAGTTGTAAGTGACTATTCATCTATATCAATAAATGCTAGG
456 CATCACATACAACTCTTTATATAGGAGTTGTAAGTGACTATTCATCTATATCAATAAATGCTAGG
26287998 AGTTGTGACTATTCATTTACAGAACTTAAATATTATAGGAGTTGTGACTATTCATGTC
521 AGTTGTGACTATTCATTTACAGAACTTAAATATTATAGGAGTTGTGACTATTCATGTC
26288056 CGTGGTGGCACAAGCTATTTTTTCCCAAGCCGCTTCATATGATTGAACTCCTTGATATATCCAAA
1 CGTGGTGGCACAAGCTATTTTTTCCCAAGCCGCTTCATATGATTGAACTCCTTGATATATCCAAA
26288121 ATAAGGCTTGTTGATTTTTCTTCCTTAATTTTCTTAAACTCTCTTTTTGAACTTGTGTTAATCCT
66 ATAAGGCTTGTTGATTTTTCTTCCTTAATTTTCTTAAACTCTCTTTTTGAACTTGTGTTAATCCT
26288186 TCCTCCTCTTCAGCCTCAACTTCATTATAACCTTTTTCAACAATCTCCCAAACTTTTAGAGATCC
131 TCCTCCTCTTCAGCCTCAACTTCATTATAACCTTTTTCAACAATCTCCCAAACTTTTAGAGATCC
26288251 AAAAAGAGCCTTCATTTGGATACTCCATTTGCCATAATTTTCTTTGGTTAATTGGGGAACAGAGG
196 AAAAAGAGCCTTCATTTGGATACTCCATTTGCCATAATTTTCTTTGGTTAATTGGGGAACAGAGG
26288316 AAAGAGAAATAGAATTGTTCATTTCGATCAAAAATAGCTCTGATACCAATTTGTAAAAGATTGAT
261 AAAGAGAAATAGAATTGTTCATTTCGATCAAAAATAGCTCTGATACCAATTTGTAAAAGATTGAT
26288381 TAATATTTGGAGAAATAAAAAAAAAGAAAATGATAAAGAATATAATGGAGAAGAGAAATAAATTT
326 TAATATTTGGAGAAATAAAAAAAAAGAAAATGATAAAGAATATAATGGAGAAGAGAAATAAATTT
26288446 TGTATGGAAGAAATAAAATTCTTTCTAATAAAATTTTTATTTCAATCACACAATTAAAAATTCTT
391 TGTATGGAAGAAATAAAATTCTTTCTAATAAAATTTTTATTTCAATCACACAATTAAAAATTCTT
26288511 CATCACATACAACTCTTTATATAGGAGTTGTAAGTGACTATTCATCTATATCAATAAATGCTAGG
456 CATCACATACAACTCTTTATATAGGAGTTGTAAGTGACTATTCATCTATATCAATAAATGCTAGG
26288576 AGTTGTGACTATTCATTTACAGAACTTAAATATTATAGGAGTTGTGACTATTCATGT
521 AGTTGTGACTATTCATTTACAGAACTTAAATATTATAGGAGTTGTGACTATTCATGT
26288633 ATGTGTGTAA
Statistics
Matches: 577, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
578 577 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.36
Consensus pattern (578 bp):
CGTGGTGGCACAAGCTATTTTTTCCCAAGCCGCTTCATATGATTGAACTCCTTGATATATCCAAA
ATAAGGCTTGTTGATTTTTCTTCCTTAATTTTCTTAAACTCTCTTTTTGAACTTGTGTTAATCCT
TCCTCCTCTTCAGCCTCAACTTCATTATAACCTTTTTCAACAATCTCCCAAACTTTTAGAGATCC
AAAAAGAGCCTTCATTTGGATACTCCATTTGCCATAATTTTCTTTGGTTAATTGGGGAACAGAGG
AAAGAGAAATAGAATTGTTCATTTCGATCAAAAATAGCTCTGATACCAATTTGTAAAAGATTGAT
TAATATTTGGAGAAATAAAAAAAAAGAAAATGATAAAGAATATAATGGAGAAGAGAAATAAATTT
TGTATGGAAGAAATAAAATTCTTTCTAATAAAATTTTTATTTCAATCACACAATTAAAAATTCTT
CATCACATACAACTCTTTATATAGGAGTTGTAAGTGACTATTCATCTATATCAATAAATGCTAGG
AGTTGTGACTATTCATTTACAGAACTTAAATATTATAGGAGTTGTGACTATTCATGTC
Found at i:26288672 original size:23 final size:23
Alignment explanation
Indices: 26288646--26288712 Score: 125
Period size: 23 Copynumber: 2.9 Consensus size: 23
26288636 TGTGTAACTT
*
26288646 TTCATCTTCAAGTCTCTTCACTC
1 TTCATATTCAAGTCTCTTCACTC
26288669 TTCATATTCAAGTCTCTTCACTC
1 TTCATATTCAAGTCTCTTCACTC
26288692 TTCATATTCAAGTCTCTTCAC
1 TTCATATTCAAGTCTCTTCAC
26288713 ATTTCTAACT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.21, C:0.31, G:0.04, T:0.43
Consensus pattern (23 bp):
TTCATATTCAAGTCTCTTCACTC
Found at i:26293532 original size:50 final size:51
Alignment explanation
Indices: 26293462--26293645 Score: 176
Period size: 51 Copynumber: 3.6 Consensus size: 51
26293452 TACCATTCGA
* * * * * **
26293462 TACACGTAGTATCCTTCACATAGTACTATACACGTGATCAAA-ATTTTTGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGACTTCCGG
* *
26293512 TTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGCCTTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGACTTCCGG
* * * * * *
26293563 TACACATAGTAGCCTGCAAATAGTACTACACATGTGACCATTA-TCTAT-CGA
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-AAGACT-TCCGG
* *
26293614 TACACGTAGTAGCCTACACTTAGTACTACACA
1 TACACGTAGTAGCCTGCACATAGTACTACACA
26293646 TGCGTTTATA
Statistics
Matches: 111, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
50 37 0.33
51 72 0.65
52 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (51 bp):
TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGACTTCCGG
Found at i:26296844 original size:23 final size:23
Alignment explanation
Indices: 26296818--26296916 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
26296808 AGTGTTATTG
26296818 ATCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
**
26296841 ATCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
* *
26296864 TTCAGTGGTAGCTACGGCTACGT
1 ATCAGTGGTAGCTACGGCTACAT
*
26296887 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
26296910 ATCAGTG
1 ATCAGTG
26296917 AAGCACTTAT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 67 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTACGGCTACAT
Found at i:26296890 original size:46 final size:46
Alignment explanation
Indices: 26296818--26296916 Score: 171
Period size: 46 Copynumber: 2.2 Consensus size: 46
26296808 AGTGTTATTG
*
26296818 ATCAGTGGTAGCTACGGCTACATATCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTACGGCTACATATCAGTGGTAGCTTCGGCTACAT
* *
26296864 TTCAGTGGTAGCTACGGCTACGTATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTACGGCTACATATCAGTGGTAGCTTCGGCTACAT
26296910 ATCAGTG
1 ATCAGTG
26296917 AAGCACTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
ATCAGTGGTAGCTACGGCTACATATCAGTGGTAGCTTCGGCTACAT
Found at i:26298159 original size:49 final size:49
Alignment explanation
Indices: 26298096--26298234 Score: 233
Period size: 49 Copynumber: 2.8 Consensus size: 49
26298086 CAATAAGTGA
*
26298096 TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTATATGT
1 TATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTATATGT
26298145 TATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTATATGT
1 TATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTATATGT
* * * *
26298194 TATGTGAGTACATGTAAGACCATAGTTGGACTATGGCATCG
1 TATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCG
26298235 AGAAAATAAG
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 85 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (49 bp):
TATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTATATGT
Found at i:26299321 original size:62 final size:63
Alignment explanation
Indices: 26299212--26299341 Score: 176
Period size: 62 Copynumber: 2.1 Consensus size: 63
26299202 AACCATCACT
* * * *
26299212 TACACGGCCTGAGCACACACCCGTGTCCCTAGCCTGTGTGACCCTAA-TCCCAAATAGTGAGC
1 TACACAGCCTGAGCACACACCCGTGTCCCTAGCCCGTATGACCCTAATTCCAAAATAGTGAGC
*
26299274 TACACAGCCT-AGACACACACCCGTGTCCCTAGCCCGTATG-CCTCTAATTCCAAAATAGTGAGT
1 TACACAGCCTGAG-CACACACCCGTGTCCCTAGCCCGTATGACC-CTAATTCCAAAATAGTGAGC
26299337 TACAC
1 TACAC
26299342 GGTCCACCAC
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
61 4 0.07
62 38 0.63
63 18 0.30
ACGTcount: A:0.27, C:0.35, G:0.18, T:0.21
Consensus pattern (63 bp):
TACACAGCCTGAGCACACACCCGTGTCCCTAGCCCGTATGACCCTAATTCCAAAATAGTGAGC
Found at i:26302653 original size:18 final size:18
Alignment explanation
Indices: 26302627--26302662 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
26302617 ATTTTGAGTT
*
26302627 AAATGAATCGAGTTATTC
1 AAATGAATCGAATTATTC
*
26302645 AAATTAATCGAATTATTC
1 AAATGAATCGAATTATTC
26302663 GAGTCGAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (18 bp):
AAATGAATCGAATTATTC
Found at i:26303796 original size:42 final size:42
Alignment explanation
Indices: 26303581--26303787 Score: 272
Period size: 42 Copynumber: 4.9 Consensus size: 42
26303571 GCGTTTACAG
* * *
26303581 AAAAAATGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTT-AA
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAA
* *
26303622 AAAAAACACCGCTAAAGATCATGTTCTTTAGCGGCTCTTAAA
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAA
* * **
26303664 AAAAAGACGCCGCTAAAGATCTTGTTCTTTAGCGGCGCATGGA
1 AAAAA-ACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAA
* *
26303707 GAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGA
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAA
* * *
26303749 CAAAAACGCCGCTAAAAATCATATTCTTTAGCGGCGCTT
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
26303788 TCTTAAAAAA
Statistics
Matches: 146, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
41 34 0.23
42 77 0.53
43 35 0.24
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (42 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAA
Found at i:26304215 original size:21 final size:21
Alignment explanation
Indices: 26304189--26304257 Score: 93
Period size: 21 Copynumber: 3.3 Consensus size: 21
26304179 GCTTCTCTCG
*
26304189 CTGCTTCACTCGTTGCAGCCT
1 CTGCTTCACTCGCTGCAGCCT
* *
26304210 CTGCTTCTCTCACTGCAGCCT
1 CTGCTTCACTCGCTGCAGCCT
* *
26304231 CTGCTTCCCTCGCTGCCGCCT
1 CTGCTTCACTCGCTGCAGCCT
26304252 CTGCTT
1 CTGCTT
26304258 TAAGTTGTAG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.06, C:0.43, G:0.17, T:0.33
Consensus pattern (21 bp):
CTGCTTCACTCGCTGCAGCCT
Found at i:26306740 original size:22 final size:22
Alignment explanation
Indices: 26306715--26306757 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
26306705 ACAACAGAAC
* *
26306715 AGGTTTTTAGCGGCGTTTTTTT
1 AGGTCTTTAGCGGCGCTTTTTT
26306737 AGGTCTTTAGCGGCGCTTTTT
1 AGGTCTTTAGCGGCGCTTTTT
26306758 AACGCCACTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.14, G:0.28, T:0.49
Consensus pattern (22 bp):
AGGTCTTTAGCGGCGCTTTTTT
Found at i:26306895 original size:42 final size:42
Alignment explanation
Indices: 26306847--26307182 Score: 421
Period size: 42 Copynumber: 8.0 Consensus size: 42
26306837 GCGTTTACAT
26306847 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
* *
26306889 AAAAAAACTCCGCTAAAGATCATGCTCTTTAGCGGCGCTTAG
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
* * *
26306931 AAAAAAAACGCCCCCAAAGATCATGTTTTTTAGCGGCGCTTAG
1 -AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
26306974 -AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
* *
26307015 GAAAAAACGCCGTTAAAGATCATGTTCTTTAGCGGCGCTTAG
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
* *
26307057 GAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTGG
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGC-TTAG
** * * * *
26307100 AGGAAAACACCTCTAAA-AGTAATGTTCTATAGCGGCGCTT-G
1 AAAAAAACGCCGCTAAAGA-TCATGTTCTTTAGCGGCGCTTAG
** *
26307141 TTCAAAAACGCCGCTAAA-AGT-AGTGTTCTTTAGCGGTGCTTA
1 -AAAAAAACGCCGCTAAAGA-TCA-TGTTCTTTAGCGGCGCTTA
26307183 TTTCACAAAC
Statistics
Matches: 260, Mismatches: 27, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
41 40 0.15
42 151 0.58
43 69 0.27
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (42 bp):
AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
Found at i:26307002 original size:84 final size:84
Alignment explanation
Indices: 26306829--26307182 Score: 421
Period size: 85 Copynumber: 4.2 Consensus size: 84
26306819 ACGTCACTAA
* * *
26306829 CTTTTGCGGCGTTTACATAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAA
1 CTTTAGCGGCGCTTAGA-AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG-AAAA
* *
26306894 AACTCCGCTAAAGATCATGCT
64 AACGCCGCTAAAGATCATGTT
* * *
26306915 CTTTAGCGGCGCTTAGAAAAAAAACGCCCCCAAAGATCATGTTTTTTAGCGGCGCTTAGAAAAAA
1 CTTTAGCGGCGCTTAGAAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAA
26306980 CGCCGCTAAAGATCATGTT
66 CGCCGCTAAAGATCATGTT
* *
26306999 CTTTAGCGGCGCTTAG-GAAAAAACGCCGTTAAAGATCATGTTCTTTAGCGGCGCTTAGGAAAAA
1 CTTTAGCGGCGCTTAGAAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTA-GAAAAA
26307063 ACGCCGCTAAAGATCATGTT
65 ACGCCGCTAAAGATCATGTT
* * ** * * * * *
26307083 CTTTAGCGGCGCTTTGGAGGAAAACACCTCTAAA-AGTAATGTTCTATAGCGGCGCTT-GTTCAA
1 CTTTAGCGGCGCTTAGAAAAAAAACGCCGCTAAAGA-TCATGTTCTTTAGCGGCGCTTAG--AAA
26307146 AAACGCCGCTAAA-AGT-AGTGTT
63 AAACGCCGCTAAAGA-TCA-TGTT
*
26307168 CTTTAGCGGTGCTTA
1 CTTTAGCGGCGCTTA
26307183 TTTCACAAAC
Statistics
Matches: 236, Mismatches: 25, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
83 37 0.16
84 83 0.35
85 102 0.43
86 14 0.06
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (84 bp):
CTTTAGCGGCGCTTAGAAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAA
CGCCGCTAAAGATCATGTT
Found at i:26307636 original size:12 final size:12
Alignment explanation
Indices: 26307619--26307678 Score: 72
Period size: 12 Copynumber: 5.2 Consensus size: 12
26307609 TTTTGAACCT
*
26307619 CTGCTTCTATCG
1 CTGCTTCTCTCG
26307631 CTGCTTCTCTCG
1 CTGCTTCTCTCG
26307643 CTGCTTCTCTCG
1 CTGCTTCTCTCG
**
26307655 CTGCGGC-CT--
1 CTGCTTCTCTCG
26307664 CTGCTTCTCTCG
1 CTGCTTCTCTCG
26307676 CTG
1 CTG
26307679 TAGCCTCTGC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
9 5 0.12
10 2 0.05
11 2 0.05
12 31 0.77
ACGTcount: A:0.02, C:0.40, G:0.20, T:0.38
Consensus pattern (12 bp):
CTGCTTCTCTCG
Found at i:26307669 original size:21 final size:21
Alignment explanation
Indices: 26307616--26307711 Score: 102
Period size: 21 Copynumber: 4.4 Consensus size: 21
26307606 TTCTTTTGAA
* **
26307616 CCTCTGCTTCTATCGCTGCTT
1 CCTCTGCTTCTCTCGCTGCAG
*
26307637 CTCTCGCTGCTTCTCTCGCTGCGG
1 C-CT--CTGCTTCTCTCGCTGCAG
*
26307661 CCTCTGCTTCTCTCGCTGTAG
1 CCTCTGCTTCTCTCGCTGCAG
* *
26307682 CCTCTGCTTCCCTCGCTGCCG
1 CCTCTGCTTCTCTCGCTGCAG
26307703 CCTCTGCTT
1 CCTCTGCTT
26307712 TAAGTTGTTG
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
21 44 0.69
22 2 0.03
23 2 0.03
24 16 0.25
ACGTcount: A:0.02, C:0.43, G:0.19, T:0.36
Consensus pattern (21 bp):
CCTCTGCTTCTCTCGCTGCAG
Found at i:26311870 original size:9 final size:9
Alignment explanation
Indices: 26311856--26312177 Score: 214
Period size: 9 Copynumber: 35.9 Consensus size: 9
26311846 TTTTTATGTA
26311856 TTATGTAAG
1 TTATGTAAG
26311865 TTATGTAAG
1 TTATGTAAG
*
26311874 TTCTGT-A-
1 TTATGTAAG
26311881 TTATGT-A-
1 TTATGTAAG
*
26311888 TTATGTATG
1 TTATGTAAG
**
26311897 CCCCATGTAAG
1 --TTATGTAAG
*
26311908 TAATGTAAG
1 TTATGTAAG
*
26311917 CTATGTAAG
1 TTATGTAAG
*
26311926 TAATGT-A-
1 TTATGTAAG
26311933 TTATGTAAG
1 TTATGTAAG
* *
26311942 TTGTGTACATCA
1 TTATGTA-A--G
*
26311954 TTATGTGAG
1 TTATGTAAG
26311963 TTATGTAAG
1 TTATGTAAG
* *
26311972 TTATTTAAT
1 TTATGTAAG
*
26311981 TTACT-TAAT
1 TTA-TGTAAG
26311990 TTATGTAAG
1 TTATGTAAG
*
26311999 TTATGTTAG
1 TTATGTAAG
* * *
26312008 ATATTTAAT
1 TTATGTAAG
26312017 TTATGTAAG
1 TTATGTAAG
26312026 TTATGTAAG
1 TTATGTAAG
* *
26312035 TTATTTAAT
1 TTATGTAAG
*
26312044 TTACT-TAAT
1 TTA-TGTAAG
26312053 TTATGTAAG
1 TTATGTAAG
* *
26312062 TTATTTAAT
1 TTATGTAAG
*
26312071 TTACT-TAAT
1 TTA-TGTAAG
26312080 TTATGTAAG
1 TTATGTAAG
*
26312089 TTATGCAAG
1 TTATGTAAG
* * *
26312098 ATATTTAAT
1 TTATGTAAG
26312107 TTATGTAAG
1 TTATGTAAG
26312116 TTATGTAAG
1 TTATGTAAG
*
26312125 TTACT-TAAT
1 TTA-TGTAAG
26312134 TTATGTAAG
1 TTATGTAAG
26312143 TTATGTAAG
1 TTATGTAAG
* *
26312152 TTATTTAAT
1 TTATGTAAG
*
26312161 TTTTGTAAG
1 TTATGTAAG
26312170 TTATGTAA
1 TTATGTAA
26312178 TTAACCAAAT
Statistics
Matches: 244, Mismatches: 52, Indels: 34
0.74 0.16 0.10
Matches are distributed among these distances:
7 17 0.07
8 7 0.03
9 203 0.83
10 5 0.02
11 7 0.03
12 5 0.02
ACGTcount: A:0.32, C:0.04, G:0.15, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:26311886 original size:25 final size:25
Alignment explanation
Indices: 26311852--26311948 Score: 72
Period size: 25 Copynumber: 3.8 Consensus size: 25
26311842 TATATTTTTA
*
26311852 TGTATTATGTAAGTTATGTAAGTTC
1 TGTATTATGTAAGTTATGTAAGTAC
* **
26311877 TGTATTATGT-A-TTATGTATGCCCC
1 TGTATTATGTAAGTTATGTAAG-TAC
* * *
26311901 ATGTAAGTAATGTAAGCTATGTAAGTAA
1 -TGT-A-TTATGTAAGTTATGTAAGTAC
*
26311929 TGTATTATGTAAGTTGTGTA
1 TGTATTATGTAAGTTATGTA
26311949 CATCATTATG
Statistics
Matches: 54, Mismatches: 12, Indels: 12
0.69 0.15 0.15
Matches are distributed among these distances:
23 8 0.15
24 2 0.04
25 26 0.48
26 2 0.04
27 8 0.15
28 1 0.02
29 7 0.13
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.43
Consensus pattern (25 bp):
TGTATTATGTAAGTTATGTAAGTAC
Found at i:26312000 original size:27 final size:27
Alignment explanation
Indices: 26311963--26312179 Score: 236
Period size: 27 Copynumber: 7.7 Consensus size: 27
26311953 ATTATGTGAG
*
26311963 TTATGTAAGTTATTTAATTTACTTAAT
1 TTATGTAAGTTATGTAATTTACTTAAT
* *
26311990 TTATGTAAGTTATGTTAGATATTTAATTTATGTAAG
1 TTATGTAAGTTATG-T--A-ATTT-A---CT-TAAT
*
26312026 TTATGTAAGTTATTTAATTTACTTAAT
1 TTATGTAAGTTATGTAATTTACTTAAT
*
26312053 TTATGTAAGTTATTTAATTTACTTAAT
1 TTATGTAAGTTATGTAATTTACTTAAT
* ** *
26312080 TTATGTAAGTTATGCAAGATATTTAAT
1 TTATGTAAGTTATGTAATTTACTTAAT
*
26312107 TTATGTAAGTTATGTAAGTTACTTAAT
1 TTATGTAAGTTATGTAATTTACTTAAT
* *
26312134 TTATGTAAGTTATGTAAGTTATTTAAT
1 TTATGTAAGTTATGTAATTTACTTAAT
*
26312161 TTTTGTAAGTTATGTAATT
1 TTATGTAAGTTATGTAATT
26312180 AACCAAATGT
Statistics
Matches: 164, Mismatches: 17, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
27 132 0.80
28 2 0.01
30 1 0.01
31 5 0.03
32 5 0.03
33 1 0.01
35 2 0.01
36 16 0.10
ACGTcount: A:0.33, C:0.02, G:0.12, T:0.52
Consensus pattern (27 bp):
TTATGTAAGTTATGTAATTTACTTAAT
Found at i:26313286 original size:264 final size:266
Alignment explanation
Indices: 26312816--26313346 Score: 1003
Period size: 264 Copynumber: 2.0 Consensus size: 266
26312806 CTCCTTAGCA
*
26312816 AAAAAAAAATTATGCAATAACGTTTGGACCAAAGACATATAATACATTTGGATACAATTAATTTA
1 AAAAAAAAATTATGCAATAACATTTGGACCAAAGACATATAATACATTTGGATACAATTAATTTA
26312881 GACCAATATAATTTTTTACGTTGTGCACCAAAGGCATATAATATATTTGGATACAAATATTTTCA
66 GACCAATATAATTTTTTACGTTGTGCACCAAAGGCATATAATATATTTGGATACAAATATTTTCA
26312946 AATTTGAGTACTTCTAAGTATTCAAAAGGATGAAAACCCAAATATATTGTTTTGGACCAAAAGAA
131 AATTTGAGTACTTCTAAGTATTCAAAAGGATGAAAACCCAAATATATTGTTTTGGACCAAAAGAA
***
26313011 AAAATTTATTGTGGAATTCATTTTCCTCCTAAATATGTAAG-T-TGTGAGCTCAGGGCATGGGCT
196 AAAATTTATTGTGGAATTCATTTTCCTCCTAAATACACAAGTTATGTGAGCTCAGGGCATGGGCT
26313074 GATTTG
261 GATTTG
26313080 AAAAAAAAATTATGCAATAACATTTGGACCAAAGACATATAATACATTTGGATACAATTAATTTA
1 AAAAAAAAATTATGCAATAACATTTGGACCAAAGACATATAATACATTTGGATACAATTAATTTA
26313145 GACCAATATAATTTTTTACGTTGTGCACCAAAGGCATATAATATATTTGGATACAAATATTTTCA
66 GACCAATATAATTTTTTACGTTGTGCACCAAAGGCATATAATATATTTGGATACAAATATTTTCA
26313210 AATTTGAGTACTTCTAAGTATTCAAAAGGATGAAAACCCAAATATATTGTTTTGGACCAAAAGAA
131 AATTTGAGTACTTCTAAGTATTCAAAAGGATGAAAACCCAAATATATTGTTTTGGACCAAAAGAA
*
26313275 AAAATTTATTGTGGCATTCATTTTCCTCCTAAATACACAAGTTATGTGAGCTCAGGGCATGGGCT
196 AAAATTTATTGTGGAATTCATTTTCCTCCTAAATACACAAGTTATGTGAGCTCAGGGCATGGGCT
26313340 GATTTG
261 GATTTG
26313346 A
1 A
26313347 TTTAAAACCA
Statistics
Matches: 260, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
264 231 0.89
265 1 0.00
266 28 0.11
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (266 bp):
AAAAAAAAATTATGCAATAACATTTGGACCAAAGACATATAATACATTTGGATACAATTAATTTA
GACCAATATAATTTTTTACGTTGTGCACCAAAGGCATATAATATATTTGGATACAAATATTTTCA
AATTTGAGTACTTCTAAGTATTCAAAAGGATGAAAACCCAAATATATTGTTTTGGACCAAAAGAA
AAAATTTATTGTGGAATTCATTTTCCTCCTAAATACACAAGTTATGTGAGCTCAGGGCATGGGCT
GATTTG
Found at i:26313868 original size:21 final size:22
Alignment explanation
Indices: 26313850--26313897 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
26313840 TGTAAATTTT
26313850 ATAAGCACCAACTGGAATTTGTCA
1 ATAAG-ACCAACTGGAATTTGT-A
*
26313874 ATTAGACCAACTGGAATTTGTA
1 ATAAGACCAACTGGAATTTGTA
26313896 AT
1 AT
26313898 TTCTAATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 3 0.13
23 16 0.70
24 4 0.17
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (22 bp):
ATAAGACCAACTGGAATTTGTA
Found at i:26313883 original size:23 final size:22
Alignment explanation
Indices: 26313856--26313898 Score: 77
Period size: 23 Copynumber: 1.9 Consensus size: 22
26313846 TTTTATAAGC
26313856 ACCAACTGGAATTTGTCAATTAG
1 ACCAACTGGAATTTGT-AATTAG
26313879 ACCAACTGGAATTTGTAATT
1 ACCAACTGGAATTTGTAATT
26313899 TCTAATTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (22 bp):
ACCAACTGGAATTTGTAATTAG
Found at i:26317566 original size:63 final size:63
Alignment explanation
Indices: 26317467--26317597 Score: 262
Period size: 63 Copynumber: 2.1 Consensus size: 63
26317457 TTTGTCAAAT
26317467 TTGTAGAACTTACTTTCGTAAAGGTTCCATTGATTCATGGTCAAACAGAACATATCGATGTGC
1 TTGTAGAACTTACTTTCGTAAAGGTTCCATTGATTCATGGTCAAACAGAACATATCGATGTGC
26317530 TTGTAGAACTTACTTTCGTAAAGGTTCCATTGATTCATGGTCAAACAGAACATATCGATGTGC
1 TTGTAGAACTTACTTTCGTAAAGGTTCCATTGATTCATGGTCAAACAGAACATATCGATGTGC
26317593 TTGTA
1 TTGTA
26317598 CCCACGATAA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 68 1.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (63 bp):
TTGTAGAACTTACTTTCGTAAAGGTTCCATTGATTCATGGTCAAACAGAACATATCGATGTGC
Found at i:26320312 original size:9 final size:9
Alignment explanation
Indices: 26320298--26320716 Score: 482
Period size: 9 Copynumber: 47.7 Consensus size: 9
26320288 ACCATAAATG
26320298 AGTTATGTA
1 AGTTATGTA
26320307 AGTTATGT-
1 AGTTATGTA
26320315 A-TTATGT-
1 AGTTATGTA
26320322 A-TTATGTA
1 AGTTATGTA
*
26320330 ATTTATGTA
1 AGTTATGTA
*
26320339 AGTTATTTA
1 AGTTATGTA
26320348 AGTTATGTA
1 AGTTATGTA
26320357 AGTTATGTA
1 AGTTATGTA
*
26320366 AGTTATTTA
1 AGTTATGTA
*
26320375 ATTTATGTA
1 AGTTATGTA
26320384 AGTTATGTA
1 AGTTATGTA
*
26320393 AGTTATTTA
1 AGTTATGTA
26320402 AGTTATGTA
1 AGTTATGTA
26320411 AGTTATGTA
1 AGTTATGTA
26320420 AGTTATGTA
1 AGTTATGTA
*
26320429 AGTTATTTA
1 AGTTATGTA
*
26320438 ATTTATGTA
1 AGTTATGTA
*
26320447 AGTTATGCA
1 AGTTATGTA
*
26320456 AGTTATTTA
1 AGTTATGTA
*
26320465 ATTTATGTA
1 AGTTATGTA
26320474 AGTTATGTA
1 AGTTATGTA
26320483 AGTTATGTA
1 AGTTATGTA
26320492 AGTTATGTA
1 AGTTATGTA
*
26320501 AGTTATTTA
1 AGTTATGTA
*
26320510 ATTTATGTA
1 AGTTATGTA
*
26320519 AGTTATATA
1 AGTTATGTA
26320528 AGTTATGTA
1 AGTTATGTA
*
26320537 AGTTATTTA
1 AGTTATGTA
*
26320546 ATTTATGTA
1 AGTTATGTA
26320555 AGTTATGTA
1 AGTTATGTA
* ** *
26320564 GGCAATAT-
1 AGTTATGTA
26320572 A-TTATGTA
1 AGTTATGTA
* *
26320580 AATAATGTA
1 AGTTATGTA
*
26320589 AGTTA-GGA
1 AGTTATGTA
26320597 AGGTTATGT-
1 A-GTTATGTA
*
26320606 A-TTGTGTA
1 AGTTATGTA
*
26320614 AGTTATTTA
1 AGTTATGTA
26320623 AGTTATGTA
1 AGTTATGTA
*
26320632 AGTTATTTA
1 AGTTATGTA
*
26320641 ATTTATGTA
1 AGTTATGTA
26320650 AGTTATGTA
1 AGTTATGTA
26320659 AGTTATGTA
1 AGTTATGTA
*
26320668 AGTTATTTA
1 AGTTATGTA
*
26320677 ATTTATGTA
1 AGTTATGTA
26320686 AGTTATGTA
1 AGTTATGTA
*
26320695 GGTTATGT-
1 AGTTATGTA
*
26320703 A-TTATGTT
1 AGTTATGTA
26320711 AGTTAT
1 AGTTAT
26320717 TATGTTATTA
Statistics
Matches: 344, Mismatches: 56, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
7 27 0.08
8 8 0.02
9 308 0.90
10 1 0.00
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (9 bp):
AGTTATGTA
Found at i:26320743 original size:29 final size:29
Alignment explanation
Indices: 26320711--26320808 Score: 87
Period size: 29 Copynumber: 3.3 Consensus size: 29
26320701 GTATTATGTT
26320711 AGTTATTATGTTATTATATAAGTTATGCA
1 AGTTATTATGTTATTATATAAGTTATGCA
* *
26320740 AGTTTCTATATATG-T-TTATATATTGTATAT--T
1 AG--T-TAT-TATGTTATTATATA-AGT-TATGCA
26320771 AGTTATTATGTTATTATATAAGTTATGCA
1 AGTTATTATGTTATTATATAAGTTATGCA
*
26320800 AGTTTTTAT
1 AGTTATTAT
26320809 ATATATATAT
Statistics
Matches: 54, Mismatches: 5, Indels: 20
0.68 0.06 0.25
Matches are distributed among these distances:
27 7 0.13
28 6 0.11
29 18 0.33
31 10 0.19
32 6 0.11
33 7 0.13
ACGTcount: A:0.32, C:0.03, G:0.12, T:0.53
Consensus pattern (29 bp):
AGTTATTATGTTATTATATAAGTTATGCA
Found at i:26320817 original size:29 final size:29
Alignment explanation
Indices: 26320725--26320842 Score: 76
Period size: 31 Copynumber: 3.9 Consensus size: 29
26320715 ATTATGTTAT
* *
26320725 TATATAAGTTATGCAAGTTTCTATATATG
1 TATATAAGTTATGCAAGTTTTTATATATA
* * *** * *
26320754 TTTATATATTGTATATTAGTTATTATGT-TA
1 TATATA-AGT-TATGCAAGTTTTTATATATA
26320784 TTATATAAGTTATGCAAGTTTTTATATATA
1 -TATATAAGTTATGCAAGTTTTTATATATA
* * *
26320814 TATATATGTATTATGTAAGTTTATATATA
1 TATATAAG--TTATGCAAGTTTTTATATA
26320843 AGTTATGATA
Statistics
Matches: 64, Mismatches: 19, Indels: 10
0.69 0.20 0.11
Matches are distributed among these distances:
29 24 0.38
30 7 0.11
31 33 0.52
ACGTcount: A:0.35, C:0.03, G:0.11, T:0.52
Consensus pattern (29 bp):
TATATAAGTTATGCAAGTTTTTATATATA
Found at i:26320933 original size:17 final size:18
Alignment explanation
Indices: 26320901--26320934 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
26320891 TGATTGATAA
26320901 ATTTTGAAAAAAATATAG
1 ATTTTGAAAAAAATATAG
*
26320919 ATTTT-AAAAATATATA
1 ATTTTGAAAAAAATATA
26320935 CATTAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (18 bp):
ATTTTGAAAAAAATATAG
Found at i:26321308 original size:9 final size:9
Alignment explanation
Indices: 26321288--26321321 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
26321278 AAAACTCATG
*
26321288 AAAAATATA
1 AAAAAAATA
*
26321297 AAATAAATA
1 AAAAAAATA
26321306 AAAAAAATA
1 AAAAAAATA
26321315 AAAAAAA
1 AAAAAAA
26321322 AACACGACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (9 bp):
AAAAAAATA
Found at i:26323072 original size:336 final size:334
Alignment explanation
Indices: 26322432--26323220 Score: 812
Period size: 336 Copynumber: 2.4 Consensus size: 334
26322422 TTTGTGGCAT
* * * *
26322432 TTTTCTGAAAAA-CGCCACTAAAAATTAAAGTTC-AAACCGAAACGGCGCCGTTTAATTAAGCTT
1 TTTTCT-AAAAAGCGCCACTAAAAATTAAAGTTCTAATCCAAAACGGCGCCGTTTTATTAAGATT
* * * * * * *
26322495 TAATGCACAGTTCTGGCGTTTTTTGTAAAAACG-TAGTAAAAATTAATTTTCTTAAGTTATATGA
65 TAATGCACAGTTCTGGCGTTTTCTGT-TAAACGCCAGTAAAAATTAATTTGCTTAAGCTAAACGA
* * * * * * *
26322559 GGTCGTTTAGACAATATTTTAAGTCATTTTACGGTGTTTTGTGCAAAAATGCCACTATAAATTAA
129 AGCCGTGTAGACAACATTTTAAGTCATTTTACGGTGTTTGGTGCAAAAACGCCACTAAAAATTAA
* * ** * * * *
26322624 GAGAAACGGCGTCGTTGGATTAATTTAGAGAAAATGATAAGTTAAAAAACTAGTACAAAAACGGC
194 CAAAAACGGCACCATTGAATTAATATAGAGAAAATGATAAATTAAAAAACTAGTACAAAAACGGC
* * * *
26322689 ATCGTTTAGACAAAATTTTAAGACAATTTTACAGTGCATCCTGAACAAACGCCGCTATTGCTTGC
259 ACCGTTTAGACAAAATTTTAAGACAACTTTACAGTGCATACTGAACAAACGCCGCTATAGCTTG-
26322754 ACGT-TTACGGCG
323 -CGTATTACGGCG
* * *
26322766 TTTTCTAAAAAGCGCCACTAAAATTTAAAGTTCTAATCCAAAACGGCACCGTTTTATTAAGATGT
1 TTTTCTAAAAAGCGCCACTAAAAATTAAAGTTCTAATCCAAAACGGCGCCGTTTTATTAAGATTT
* *
26322831 AATGCACATTTCTGGCGTTTTCTGATTAAACGCCAGTAAAAATAAATTTGCTTAAGCTAAACGAA
66 AATGCACAGTTCTGGCGTTTTCTG-TTAAACGCCAGTAAAAATTAATTTGCTTAAGCTAAACGAA
* * * *
26322896 GCCGTGTAGGCAACATTTTATGTCACTTTTGCGGTGTTTGGTGTAAAAACGCCAC-AAAAATTAA
130 GCCGTGTAGACAACATTTTAAGTCA-TTTTACGGTGTTTGGTGCAAAAACGCCACTAAAAATTAA
* ** ** * *
26322960 CAAAAATGGCACCATTGAATTAATATAGAGAAAATTCTAAATATAAAAATGT-GTACAGAGACGG
194 CAAAAACGGCACCATTGAATTAATATAGAGAAAATGATAAAT-TAAAAAACTAGTACAAAAACGG
** * *
26323024 TGCCGTTTAG-CAAAAATTTTAAGAC-ACTTT-C-GTGGCGTTTATTGAACAAACGCCGCTATAG
258 CACCGTTTAGAC-AAAATTTTAAGACAACTTTACAGT-GC--ATACTGAACAAACGCCGCTATAG
* *
26323085 CTTGTGTACTTGCGGCG
319 CTTGCGTA-TTACGGCG
* * * * *
26323102 -TTTCTAGACAAGTGCCAC-AAAGAATGAAGGTTCTAATCCAAAACGGCGCCGTTTTGTTAAGAT
1 TTTTCTA-AAAAGCGCCACTAAA-AATTAAAGTTCTAATCCAAAACGGCGCCGTTTTATTAAGAT
* *
26323165 TTAATGCATAGTTCTGGTGTTTTCCT-TTAAAGCGCCAGTAAAAATTAATTTGCTTA
64 TTAATGCACAGTTCTGGCGTTTT-CTGTTAAA-CGCCAGTAAAAATTAATTTGCTTA
26323221 TGTTAGACGT
Statistics
Matches: 375, Mismatches: 64, Indels: 30
0.80 0.14 0.06
Matches are distributed among these distances:
333 7 0.02
334 31 0.08
335 71 0.19
336 232 0.62
337 34 0.09
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (334 bp):
TTTTCTAAAAAGCGCCACTAAAAATTAAAGTTCTAATCCAAAACGGCGCCGTTTTATTAAGATTT
AATGCACAGTTCTGGCGTTTTCTGTTAAACGCCAGTAAAAATTAATTTGCTTAAGCTAAACGAAG
CCGTGTAGACAACATTTTAAGTCATTTTACGGTGTTTGGTGCAAAAACGCCACTAAAAATTAACA
AAAACGGCACCATTGAATTAATATAGAGAAAATGATAAATTAAAAAACTAGTACAAAAACGGCAC
CGTTTAGACAAAATTTTAAGACAACTTTACAGTGCATACTGAACAAACGCCGCTATAGCTTGCGT
ATTACGGCG
Found at i:26325073 original size:72 final size:72
Alignment explanation
Indices: 26324916--26325113 Score: 200
Period size: 72 Copynumber: 2.7 Consensus size: 72
26324906 ATTAGCGGCA
* * * * * *
26324916 CTTACCCATAAACGCCACTAAATCCCCCGAAAGCTCCGAAAACGGCGTCGTTGGGCTTAGGTATT
1 CTTACTCAAAAACGCCACTAAAT-CACCAAAAGCT-CAAAAACGGCGTCGTTAGGCTTAGGTATT
26324981 TTTGCAGCG
64 TTTGCAGCG
* * *
26324990 CTTTCTCAAAAATGCCACTAAATCACCAAAAGCTCAAAAACGGCGTTGTTAGGCTTAGGTATTTT
1 CTTACTCAAAAACGCCACTAAATCACCAAAAGCTCAAAAACGGCGTCGTTAGGCTTAGGTATTTT
**
26325055 TGTGGCG
66 TGCAGCG
* ** * *
26325062 CTTAACT-AAAAACACTGCTAAATTCGCGAAAAGCTCAGAAAACGGCGTCGTT
1 CTT-ACTCAAAAACGCCACTAAA-TCACCAAAAGCTCA-AAAACGGCGTCGTT
26325114 GGGGTTATGT
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
72 47 0.46
73 23 0.23
74 32 0.31
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.25
Consensus pattern (72 bp):
CTTACTCAAAAACGCCACTAAATCACCAAAAGCTCAAAAACGGCGTCGTTAGGCTTAGGTATTTT
TGCAGCG
Found at i:26325357 original size:114 final size:113
Alignment explanation
Indices: 26325145--26325382 Score: 284
Period size: 114 Copynumber: 2.1 Consensus size: 113
26325135 GCTTTACCGT
* *
26325145 AAACGCCGCTAAAGCCCTGAGCGTTAGCGGCGCTTACCTAAAAACGCCGCTCAATCCCCGAAAGC
1 AAACGCCGCTAAAGCCCTGAGCGTTAGCGGCACTTACCTAAAAACGCCGCTAAATCCCCGAAAGC
* * * * * * *
26325210 TCAGAAATGGCGTCGTTGGGCTTACATTTTTTTGTGGCACTTTTTCAA
66 TCAGAAACGGAGTCGTTGGGATTACAGTATTTTGCGGCACTTTATCAA
* * *
26325258 AAACGCCGCTAAATG-CCTGAG-GCTTAGCGGCACTTTCTTAAAAAACGCCGCTAAATTCCCGAA
1 AAACGCCGCTAAA-GCCCTGAGCG-TTAGCGGCACTTACCT-AAAAACGCCGCTAAATCCCCGAA
* **
26325321 AGCTCAGAAAACGGAGTCGTTGGGATTA-GGTATTTTGCGGCACTTTATGGA
63 AGCTCAG-AAACGGAGTCGTTGGGATTACAGTATTTTGCGGCACTTTATCAA
26325372 AAACGCCGCTA
1 AAACGCCGCTA
26325383 CTGCTTATTT
Statistics
Matches: 106, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
112 1 0.01
113 32 0.30
114 56 0.53
115 17 0.16
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.24
Consensus pattern (113 bp):
AAACGCCGCTAAAGCCCTGAGCGTTAGCGGCACTTACCTAAAAACGCCGCTAAATCCCCGAAAGC
TCAGAAACGGAGTCGTTGGGATTACAGTATTTTGCGGCACTTTATCAA
Found at i:26327622 original size:17 final size:18
Alignment explanation
Indices: 26327595--26327628 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
26327585 TTAGGTTAAC
26327595 TAAATTAATTTTCTCAAT
1 TAAATTAATTTTCTCAAT
26327613 TAAA-TAATTTTCTCAA
1 TAAATTAATTTTCTCAA
26327629 CTCAATTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.47
Consensus pattern (18 bp):
TAAATTAATTTTCTCAAT
Found at i:26330892 original size:21 final size:21
Alignment explanation
Indices: 26330868--26330909 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
26330858 TAAGGGGGTT
*
26330868 TAAAGTTAAAAAAACTAAAAA
1 TAAAATTAAAAAAACTAAAAA
* *
26330889 TAAAATTAAACAAAGTAAAAA
1 TAAAATTAAAAAAACTAAAAA
26330910 AAGATCATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.71, C:0.05, G:0.05, T:0.19
Consensus pattern (21 bp):
TAAAATTAAAAAAACTAAAAA
Found at i:26336266 original size:24 final size:24
Alignment explanation
Indices: 26336227--26336277 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
26336217 AAATATTTTT
*
26336227 ATTTTTAGGAATATT-AGTTACTA
1 ATTTTTAGGAATATTAAGTAACTA
26336250 ATTTTTAGATGAA-ATTAAGTAACTA
1 ATTTTTAG--GAATATTAAGTAACTA
26336275 ATT
1 ATT
26336278 AAGAATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 8 0.33
24 3 0.12
25 13 0.54
ACGTcount: A:0.39, C:0.04, G:0.12, T:0.45
Consensus pattern (24 bp):
ATTTTTAGGAATATTAAGTAACTA
Found at i:26343360 original size:5 final size:5
Alignment explanation
Indices: 26343350--26343374 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26343340 ATATAAATTA
26343350 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
26343375 ATAAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:26343590 original size:22 final size:22
Alignment explanation
Indices: 26343556--26343605 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
26343546 TCTTTTAACA
* *
26343556 CATAAACATTCAATTATATTGG
1 CATAATCAATCAATTATATTGG
*
26343578 CATAATCAATCAATTATGTTGG
1 CATAATCAATCAATTATATTGG
26343600 CATAAT
1 CATAAT
26343606 ACATCCATGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (22 bp):
CATAATCAATCAATTATATTGG
Found at i:26344991 original size:92 final size:92
Alignment explanation
Indices: 26344895--26345567 Score: 1098
Period size: 92 Copynumber: 7.3 Consensus size: 92
26344885 AACTTATCTT
*
26344895 CATATACAAATAAATTTCAGCAATGTATAATCAAATACGAATCAATTCGACAACTTATCTTCATA
1 CATATACAAATAAATTTCAGCAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATA
26344960 TACAAATCAATTTCGATAATATATAAC
66 TACAAATCAATTTCGATAATATATAAC
* **
26344987 CATATACAAATAAATTTCAGCAATGTATAATTATATACGAATCAATTCGGTAACTTATCTTCATA
1 CATATACAAATAAATTTCAGCAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATA
26345052 TACAAATCAATTTCGATAATATATAAC
66 TACAAATCAATTTCGATAATATATAAC
* * *
26345079 CATATAAAAATAAATTTCAGCAATGTAAAATCAAATACGAATCAATTCGACAACTTATCTTCATA
1 CATATACAAATAAATTTCAGCAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATA
*
26345144 TAC-CATCAATTTCGATAATATATAAC
66 TACAAATCAATTTCGATAATATATAAC
* *
26345170 CATATACAAATAAATTTCAGCAATGTATAATTATATACGAATCAATTC-AGTAACTTATCTTCAT
1 CATATACAAATAAATTTCAGCAATGTATAATCATATACGAATCAATTCGA-CAACTTATCTTCAT
26345234 ATACAAATCAATTTCGATAATATATAAC
65 ATACAAATCAATTTCGATAATATATAAC
* * *
26345262 CATATAAAAATAAATTTCAGTAATGTATAATCATATACGAATCAATTCGGCAACTTATCTTCATA
1 CATATACAAATAAATTTCAGCAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATA
26345327 TACAAATCAATTTCGATAATATATAAC
66 TACAAATCAATTTCGATAATATATAAC
* * * * * *
26345354 AATATACAAATAAATTTCATCAATGTATAATTATATACGAATCAATTTGGCAACTTATCTTCTTA
1 CATATACAAATAAATTTCAGCAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATA
*
26345419 TACAAATCAATTTCGATAATATATGAC
66 TACAAATCAATTTCGATAATATATAAC
* * *
26345446 CATATACAAATAAACTTCAGTAATGTATAATCATATACGAATCAATTTGACAACTTATCTTCATA
1 CATATACAAATAAATTTCAGCAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATA
26345511 TACAAATCAATTTCGATAATATATAAC
66 TACAAATCAATTTCGATAATATATAAC
* *
26345538 CACATACAAATAAATTTCAGTAATGTATAA
1 CATATACAAATAAATTTCAGCAATGTATAA
26345568 AACAATCAAA
Statistics
Matches: 538, Mismatches: 40, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
90 1 0.00
91 83 0.15
92 454 0.84
ACGTcount: A:0.45, C:0.16, G:0.06, T:0.34
Consensus pattern (92 bp):
CATATACAAATAAATTTCAGCAATGTATAATCATATACGAATCAATTCGACAACTTATCTTCATA
TACAAATCAATTTCGATAATATATAAC
Found at i:26345450 original size:367 final size:368
Alignment explanation
Indices: 26344895--26345567 Score: 1168
Period size: 367 Copynumber: 1.8 Consensus size: 368
26344885 AACTTATCTT
*
26344895 CATATACAAATAAATTTCAGCAATGTATAATCAAATACGAATCAATTCGACAACTTATCTTCATA
1 CATATAAAAATAAATTTCAGCAATGTATAATCAAATACGAATCAATTCGACAACTTATCTTCATA
*
26344960 TACAAATCAATTTCGATAATATATAACCATATACAAATAAATTTCAGCAATGTATAATTATATAC
66 TACAAATCAATTTCGATAATATATAACAATATACAAATAAATTTCAGCAATGTATAATTATATAC
*
26345025 GAATCAATTCGGTAACTTATCTTCATATACAAATCAATTTCGATAATATATAACCATATAAAAAT
131 GAATCAATTCGGCAACTTATCTTCATATACAAATCAATTTCGATAATATATAACCATATAAAAAT
* *
26345090 AAATTTCAGCAATGTAAAATCAAATACGAATCAATTCGACAACTTATCTTCATATAC-CATCAAT
196 AAACTTCAGCAATGTAAAATCAAATACGAATCAATTCGACAACTTATCTTCATATACAAATCAAT
*
26345154 TTCGATAATATATAACCATATACAAATAAATTTCAGCAATGTATAATTATATACGAATCAATTCA
261 TTCGATAATATATAACCACATACAAATAAATTTCAGCAATGTATAATTATATACGAATCAATTCA
26345219 GTAACTTATCTTCATATACAAATCAATTTCGATAATATATAAC
326 GTAACTTATCTTCATATACAAATCAATTTCGATAATATATAAC
* * *
26345262 CATATAAAAATAAATTTCAGTAATGTATAATCATATACGAATCAATTCGGCAACTTATCTTCATA
1 CATATAAAAATAAATTTCAGCAATGTATAATCAAATACGAATCAATTCGACAACTTATCTTCATA
*
26345327 TACAAATCAATTTCGATAATATATAACAATATACAAATAAATTTCATCAATGTATAATTATATAC
66 TACAAATCAATTTCGATAATATATAACAATATACAAATAAATTTCAGCAATGTATAATTATATAC
* * * *
26345392 GAATCAATTTGGCAACTTATCTTCTTATACAAATCAATTTCGATAATATATGACCATATACAAAT
131 GAATCAATTCGGCAACTTATCTTCATATACAAATCAATTTCGATAATATATAACCATATAAAAAT
* * * *
26345457 AAACTTCAGTAATGTATAATCATATACGAATCAATTTGACAACTTATCTTCATATACAAATCAAT
196 AAACTTCAGCAATGTAAAATCAAATACGAATCAATTCGACAACTTATCTTCATATACAAATCAAT
*
26345522 TTCGATAATATATAACCACATACAAATAAATTTCAGTAATGTATAA
261 TTCGATAATATATAACCACATACAAATAAATTTCAGCAATGTATAA
26345568 AACAATCAAA
Statistics
Matches: 286, Mismatches: 19, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
367 236 0.83
368 50 0.17
ACGTcount: A:0.45, C:0.16, G:0.06, T:0.34
Consensus pattern (368 bp):
CATATAAAAATAAATTTCAGCAATGTATAATCAAATACGAATCAATTCGACAACTTATCTTCATA
TACAAATCAATTTCGATAATATATAACAATATACAAATAAATTTCAGCAATGTATAATTATATAC
GAATCAATTCGGCAACTTATCTTCATATACAAATCAATTTCGATAATATATAACCATATAAAAAT
AAACTTCAGCAATGTAAAATCAAATACGAATCAATTCGACAACTTATCTTCATATACAAATCAAT
TTCGATAATATATAACCACATACAAATAAATTTCAGCAATGTATAATTATATACGAATCAATTCA
GTAACTTATCTTCATATACAAATCAATTTCGATAATATATAAC
Found at i:26349352 original size:19 final size:19
Alignment explanation
Indices: 26349328--26349404 Score: 91
Period size: 19 Copynumber: 3.8 Consensus size: 19
26349318 CTTGAAAAGG
*
26349328 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAA
26349347 GATATGCAATCTTAGATAA
1 GATATGCAATCTTAGATAA
*
26349366 GATATACAATCTTAGAAGATAA
1 GATATGCAATCTT---AGATAA
*
26349388 GATATTGTAATCTTAGA
1 GATA-TGCAATCTTAGA
26349405 GATTTAATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
19 30 0.60
20 3 0.06
22 10 0.20
23 7 0.14
ACGTcount: A:0.42, C:0.09, G:0.16, T:0.34
Consensus pattern (19 bp):
GATATGCAATCTTAGATAA
Found at i:26350263 original size:24 final size:24
Alignment explanation
Indices: 26350230--26350346 Score: 100
Period size: 24 Copynumber: 5.0 Consensus size: 24
26350220 AAGTGTATTG
26350230 TATATTATTATTTTAGATTTATCA
1 TATATTATTATTTTAGATTTATCA
* *
26350254 TGTTTTATTATTTGTA-ATTTATCA
1 TATATTATTATTT-TAGATTTATCA
* * *
26350278 -ATAATA-T-TTTTAAATTTATTA
1 TATATTATTATTTTAGATTTATCA
*
26350299 TATACTATTATTTTAGA-TTATCA
1 TATATTATTATTTTAGATTTATCA
** * *
26350322 CGTATGATTATTTTAGAATTATCA
1 TATATTATTATTTTAGATTTATCA
26350346 T
1 T
26350347 CAAAATTTTT
Statistics
Matches: 73, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
20 2 0.03
21 10 0.14
22 6 0.08
23 22 0.30
24 31 0.42
25 2 0.03
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.56
Consensus pattern (24 bp):
TATATTATTATTTTAGATTTATCA
Found at i:26350332 original size:68 final size:69
Alignment explanation
Indices: 26350225--26350388 Score: 183
Period size: 68 Copynumber: 2.4 Consensus size: 69
26350215 TATCTAAGTG
* * * * * *
26350225 TATTGTATATTATTATTTTAGATTTATCATGTTTTATTATTTGTA-ATTTATCAAT-AATATTTT
1 TATTATATATTATTATTTTAGATTTATCACGTATGATTATTT-TAGAATTATC-ATCAAAATTTT
26350288 TAAATT
64 TAAATT
*
26350294 TATTATATACTATTATTTTAGA-TTATCACGTATGATTATTTTAGAATTATCATCAAAATTTTTA
1 TATTATATATTATTATTTTAGATTTATCACGTATGATTATTTTAGAATTATCATCAAAATTTTTA
26350358 AATT
66 AATT
* * *
26350362 T-TATATGTATTATTATTTCAAATTTAT
1 TAT-TATATATTATTATTTTAGATTTAT
26350389 TATATATTAT
Statistics
Matches: 80, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
67 5 0.06
68 51 0.64
69 24 0.30
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (69 bp):
TATTATATATTATTATTTTAGATTTATCACGTATGATTATTTTAGAATTATCATCAAAATTTTTA
AATT
Found at i:26350486 original size:23 final size:23
Alignment explanation
Indices: 26350459--26350503 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
26350449 AATTGTACAT
*
26350459 TCATATATATTATTTGTTTTAAC
1 TCATATATATTATTTATTTTAAC
*
26350482 TCATATATATTGTTTATTTTAA
1 TCATATATATTATTTATTTTAA
26350504 AATTTTGAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (23 bp):
TCATATATATTATTTATTTTAAC
Found at i:26352017 original size:16 final size:16
Alignment explanation
Indices: 26351992--26352026 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
26351982 TTGTGTTTTG
*
26351992 TTTTGGCTGCATGACA
1 TTTTGACTGCATGACA
*
26352008 TTTTGACTGCATGGCA
1 TTTTGACTGCATGACA
26352024 TTT
1 TTT
26352027 CATCATAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.43
Consensus pattern (16 bp):
TTTTGACTGCATGACA
Found at i:26359720 original size:397 final size:396
Alignment explanation
Indices: 26358988--26359786 Score: 1463
Period size: 397 Copynumber: 2.0 Consensus size: 396
26358978 TTAATTTTTA
26358988 GACTTTATAAATAAATTTCTATGTAAAAATTCAGCCCAAAGAGGCCCATTAAAGGCCTTGGACGA
1 GACTTTATAAATAAATTTCTATGTAAAAATTCAGCCCAAAGAGGCCCATTAAAGGCCTTGGACGA
* * *
26359053 AATTCCCTTGAAAATCAATGATTAGGTTTTTTTTTTTAGTTTTCCTATTAGGGTTAGGAAAATTG
66 AATTCCCTTGAAAATCAATAATTAGGTTTTTTTTTTTAGTTTTCCTATTAGGGCTAGGAAAATAG
* *
26359118 TTAGAAGGCCTATATATATGGCTTGGCTAGGCACCCATAGAATATACATTGATTATACTTTGAAA
131 TTAGAAGGCCTATATATATGGCTTGGCCAGCCACCCATAGAATATACATTGATTATACTTTGAAA
*
26359183 TCATATTTTTGTTGAGTGAAAATTCTCTTTGGGTTTTCTCCAAGAATTTTCTCTTGAGTTTTCTT
196 TCAGATTTTTGTTGAGTGAAAATTCTCTTTGGGTTTTCTCCAAGAATTTTCTCTTGAGTTTTCTT
*
26359248 TGGAAGTAGTTTTAACAATCTTTTTGATTGTGGGAGCCATCTTCAGTCTTCTTCTTGCCATTGTC
261 TGGAAGTAGTTTTAACAATCTTTTTGATTGTGGGAGCCATCTTCAGCCTTCTTCTTGCCATTGTC
26359313 CTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAGTTGTGAAATCTTTCTCGATTTCAAGGCT
326 CTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAGTTGTGAAATCTTTCTCGATTTCAAGGCT
26359378 TCTTAG
391 TCTTAG
26359384 GACTTTATAAATAAATTTCTATGTAAAAATTCAGCCCAAAGAGGCCCATTAAAGGCCTTGGACGA
1 GACTTTATAAATAAATTTCTATGTAAAAATTCAGCCCAAAGAGGCCCATTAAAGGCCTTGGACGA
*
26359449 AATTCCCTTGAAAATCAATAATTAGGTTTTTTTTTTTTAGTTTTCCTGTTAGGGCTAGGAAAATA
66 AATTCCCTTGAAAATCAATAATTAGG-TTTTTTTTTTTAGTTTTCCTATTAGGGCTAGGAAAATA
26359514 GTTAGAAGGCCTATATATATGGCTTGGCCAGCCACCCATAGAATATACATTGATTATACTTTGAA
130 GTTAGAAGGCCTATATATATGGCTTGGCCAGCCACCCATAGAATATACATTGATTATACTTTGAA
26359579 ATCAGATTTTTGTTGAGTGAAAATTCTCTTTGGGTTTTCTCCAAGAATTTTCTCTTGAGTTTTCT
195 ATCAGATTTTTGTTGAGTGAAAATTCTCTTTGGGTTTTCTCCAAGAATTTTCTCTTGAGTTTTCT
* *
26359644 TTGGAAGTAGTTTTAACAATCTTTTTTATTGTGGGAGCCATCTTCAGCCTTGTTCTTGCCATTGT
260 TTGGAAGTAGTTTTAACAATCTTTTTGATTGTGGGAGCCATCTTCAGCCTTCTTCTTGCCATTGT
* * * *
26359709 TCTTCATTGGAGGGGAGATTAGAGCTGTTTGAAGGGAGTTGTGAAATCTTTTTCGATTTCAAGGC
325 CCTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAGTTGTGAAATCTTTCTCGATTTCAAGGC
26359774 TTCTTAG
390 TTCTTAG
26359781 GACTTT
1 GACTTT
26359787 TTCTTTATGT
Statistics
Matches: 388, Mismatches: 14, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
396 90 0.23
397 298 0.77
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.39
Consensus pattern (396 bp):
GACTTTATAAATAAATTTCTATGTAAAAATTCAGCCCAAAGAGGCCCATTAAAGGCCTTGGACGA
AATTCCCTTGAAAATCAATAATTAGGTTTTTTTTTTTAGTTTTCCTATTAGGGCTAGGAAAATAG
TTAGAAGGCCTATATATATGGCTTGGCCAGCCACCCATAGAATATACATTGATTATACTTTGAAA
TCAGATTTTTGTTGAGTGAAAATTCTCTTTGGGTTTTCTCCAAGAATTTTCTCTTGAGTTTTCTT
TGGAAGTAGTTTTAACAATCTTTTTGATTGTGGGAGCCATCTTCAGCCTTCTTCTTGCCATTGTC
CTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAGTTGTGAAATCTTTCTCGATTTCAAGGCT
TCTTAG
Found at i:26360651 original size:11 final size:11
Alignment explanation
Indices: 26360637--26360671 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
26360627 TGAAAAAATG
26360637 AGAAAATGAAA
1 AGAAAATGAAA
26360648 AGAAAATGAAAA
1 AGAAAATG-AAA
*
26360660 AGAAAAGGAAA
1 AGAAAATGAAA
26360671 A
1 A
26360672 AGAGAGACCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.74, C:0.00, G:0.20, T:0.06
Consensus pattern (11 bp):
AGAAAATGAAA
Found at i:26360662 original size:12 final size:12
Alignment explanation
Indices: 26360637--26360674 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
26360627 TGAAAAAATG
26360637 AGAAAATG-AAA
1 AGAAAATGAAAA
26360648 AGAAAATGAAAA
1 AGAAAATGAAAA
*
26360660 AGAAAAGGAAAA
1 AGAAAATGAAAA
26360672 AGA
1 AGA
26360675 GAGACCAAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 8 0.32
12 17 0.68
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (12 bp):
AGAAAATGAAAA
Found at i:26362241 original size:12 final size:12
Alignment explanation
Indices: 26362224--26362248 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26362214 AAATTGAGAC
26362224 TATCCCTTCAGA
1 TATCCCTTCAGA
26362236 TATCCCTTCAGA
1 TATCCCTTCAGA
26362248 T
1 T
26362249 CTTGTTGTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.08, T:0.36
Consensus pattern (12 bp):
TATCCCTTCAGA
Found at i:26363441 original size:254 final size:255
Alignment explanation
Indices: 26363003--26363965 Score: 1341
Period size: 253 Copynumber: 3.8 Consensus size: 255
26362993 CAGATTTAAG
* * *
26363003 ACGGCGAATCTTATCTTCCCAAGGTAATAGGGAAACAGATTTAAGCCACTAAGTCATATCTCCCT
1 ACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAAGTCCTATCTCCCT
*
26363068 GAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTCAGCAGTAGTGGAGCAGATCG
66 GAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCG
* *
26363133 AAGACGGTGAATCTTATCTTCCCAAAGTAGTAGGGAAACAGATTTAAGCCACCAATCCTATCTCC
131 AAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAACAGATTTAAGCCACCAATCCTATCTCC
*
26363198 CTGAGTAGCAGTGGAGTAGGCAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAA
196 CTGAGCAGCAGTGGAGTAGGCAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAA
** * * * *
26363258 ACGGCTTATCTTATCTTCCCAAGGTAGTAGGGGAGCAGATTTAAGCCGC-CAGTCCTATCTCCTT
1 ACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAAGTCCTATCTCCCT
*
26363322 GAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGTAGATCG
66 GAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCG
*
26363387 AAGACGGCGAATCTTATCTTCCCAAGGTAATAGGGAAACAGATTTAAGCCACCAATCCTATCTCC
131 AAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAACAGATTTAAGCCACCAATCCTATCTCC
* * *
26363452 CTGACCAGCAGTGGAGTAGGTAGAT-CTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
196 CTGAGCAGCAGTGGAGTAGGCAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAA
* * *
26363511 ATGACGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCAC-CAGTCCTATCTCCCT
1 ACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAAGTCCTATCTCCCT
* * * *
26363575 GAGTAGCAATTGAGTAGGTTGAAGATTGTAGATCCTGTCTCTCTAAGCAGTAGTGGAGCAGATCG
66 GAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCG
* * *
26363640 AAGACGGCGAATCTTATCTTCCCGAGGTAGTAGGGAAGCAGATTTAAGCCACTAAGTCCTATCTC
131 AAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAACAGATTTAAGCCACCAA-TCCTATCTC
* *
26363705 CCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGGTCCTGTCTCCCTAAGCAGTAGTGGAGTAGA
195 CCTGAGCAGCAGTGGAGTA-G--G--CA--G-A--TCCTGTCTCCCTAAGCAGTAGTGGAGCAGA
26363770 TC-AAA
250 TCGAAA
* *
26363775 GACGGCGAATC---T-TTCCCGAGGTAGTAGGGAAGTAGATTTAAGCCACTAAGTCCTATCTCCC
1 -ACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAAGTCCTATCTCCC
* * * * *
26363836 TGAGCAGTAGTGGAGTAGGGTGAAGAATGTAGATCCCGTCTCCCTAAGCAGTAGTAGAGCAGATC
65 TGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATC
* ** * * * * *
26363901 AAAGACGATGAAT-TTCATCTTTCCAAGGTAGTAGGGAAGCAGATTTAAACCACCAGTCATATCT
130 GAAGACGGCGAATCTT-ATCTTCCCAAGGTAGTAGGGAAACAGATTTAAGCCACCAATCCTATCT
26363965 C
194 C
26363966 TTTGGCATTA
Statistics
Matches: 632, Mismatches: 61, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
253 201 0.32
254 186 0.29
255 44 0.07
257 1 0.00
259 1 0.00
261 43 0.07
262 116 0.18
264 3 0.00
265 37 0.06
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.25
Consensus pattern (255 bp):
ACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACTAAGTCCTATCTCCCT
GAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCG
AAGACGGCGAATCTTATCTTCCCAAGGTAGTAGGGAAACAGATTTAAGCCACCAATCCTATCTCC
CTGAGCAGCAGTGGAGTAGGCAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAA
Found at i:26363461 original size:132 final size:132
Alignment explanation
Indices: 26363219--26363965 Score: 1013
Period size: 132 Copynumber: 5.8 Consensus size: 132
26363209 TGGAGTAGGC
* **
26363219 AGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACGGCTTATCTTATCTTCCCAAGGTA
1 AGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTA
* * * *
26363284 GTAGGGGAGCAGATTTAAGCCGCCAGTCCTATCTCCTTGAGCAGCAGTGGAGTAGGTTGAAGATT
66 GTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATT
26363349 GT
131 GT
*
26363351 AGATCCTGTCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTA
1 AGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTA
* * *
26363416 ATAGGGAAACAGATTTAAGCCACCAATCCTATCTCCCTGACCAGCAGT-G-G-A-G-T--AG---
66 GTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATT
26363471 GT
131 GT
* *
26363473 AGAT-CTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACGAATCTTATCTTCCCAAGGTA
1 AGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTA
* * * *
26363537 GTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAGTAGCAATTGAGTAGGTTGAAGATT
66 GTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATT
26363602 GT
131 GT
* *
26363604 AGATCCTGTCTCTCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCGAGGTA
1 AGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTA
*
26363669 GTAGGGAAGCAGATTTAAGCCACTAAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAT
66 GTAGGGAAGCAGATTTAAGCCACCAA-TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAT
26363734 TGT
130 TGT
* * * *
26363737 AGGTCCTGTCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGGCGAATC---T-TTCCCGAGGTA
1 AGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTA
* * * * *
26363798 GTAGGGAAGTAGATTTAAGCCACTAAGTCCTATCTCCCTGAGCAGTAGTGGAGTAGGGTGAAGAA
66 GTAGGGAAGCAGATTTAAGCCACCAA-TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAT
26363863 TGT
130 TGT
* * * ** *
26363866 AGATCCCGTCTCCCTAAGCAGTAGTAGAGCAGATCAAAGACGATGAAT-TTCATCTTTCCAAGGT
1 AGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTT-ATCTTCCCAAGGT
* * *
26363930 AGTAGGGAAGCAGATTTAAACCACCAGTCATATCTC
65 AGTAGGGAAGCAGATTTAAGCCACCAATCCTATCTC
26363966 TTTGGCATTA
Statistics
Matches: 548, Mismatches: 50, Indels: 34
0.87 0.08 0.05
Matches are distributed among these distances:
121 99 0.18
122 7 0.01
123 1 0.00
124 1 0.00
125 3 0.01
126 1 0.00
127 1 0.00
128 3 0.01
129 118 0.22
130 2 0.00
131 7 0.01
132 191 0.35
133 114 0.21
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.25
Consensus pattern (132 bp):
AGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGGTA
GTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATT
GT
Found at i:26364041 original size:50 final size:50
Alignment explanation
Indices: 26363987--26364165 Score: 288
Period size: 50 Copynumber: 3.6 Consensus size: 50
26363977 AGTGGAACAG
* *
26363987 ATTGAAGCTACAACAGCGAATCTTACTTCTCTGACGTTGCTGTAAAATAT
1 ATTGAAGCTACAACAACGAATCTTACTTCTCCGACGTTGCTGTAAAATAT
* * *
26364037 ATTGAAGCTACAACAGCAAATCTTACTTCTCCGACGTTGCAGTAAAATAT
1 ATTGAAGCTACAACAACGAATCTTACTTCTCCGACGTTGCTGTAAAATAT
*
26364087 ATTGAAGCTACAACAACGAATCTTACTTCTCCGACGTTG-TAGTAAAATAG
1 ATTGAAGCTACAACAACGAATCTTACTTCTCCGACGTTGCT-GTAAAATAT
26364137 ATTGAAGCTACAACAACGAATCTTACTTC
1 ATTGAAGCTACAACAACGAATCTTACTTC
26364166 CCCTGAAGTT
Statistics
Matches: 121, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
50 121 1.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (50 bp):
ATTGAAGCTACAACAACGAATCTTACTTCTCCGACGTTGCTGTAAAATAT
Found at i:26364184 original size:50 final size:50
Alignment explanation
Indices: 26363985--26364195 Score: 273
Period size: 50 Copynumber: 4.2 Consensus size: 50
26363975 ACAGTGGAAC
* * *
26363985 AGATTGAAGCTACAACAGCGAATCTTACTTCTCTGACGTTGCT-GTAAAAT
1 AGATTGAAGCTACAACAACGAATCTTACTTCCCCGACGTTG-TAGTAAAAT
* * * * *
26364035 ATATTGAAGCTACAACAGCAAATCTTACTTCTCCGACGTTGCAGTAAAAT
1 AGATTGAAGCTACAACAACGAATCTTACTTCCCCGACGTTGTAGTAAAAT
* *
26364085 ATATTGAAGCTACAACAACGAATCTTACTTCTCCGACGTTGTAGTAAAAT
1 AGATTGAAGCTACAACAACGAATCTTACTTCCCCGACGTTGTAGTAAAAT
*
26364135 AGATTGAAGCTACAACAACGAATCTTACTTCCCCTGAAGTTGTAG-AAAAT
1 AGATTGAAGCTACAACAACGAATCTTACTTCCCC-GACGTTGTAGTAAAAT
*
26364185 CAAATTGAAGC
1 -AGATTGAAGC
26364196 CACTAATCCT
Statistics
Matches: 147, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
50 129 0.88
51 18 0.12
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (50 bp):
AGATTGAAGCTACAACAACGAATCTTACTTCCCCGACGTTGTAGTAAAAT
Found at i:26364618 original size:19 final size:19
Alignment explanation
Indices: 26364594--26364647 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
26364584 CTTAAAAAAG
*
26364594 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAA
26364613 GATATGCAATCTTAGATAA
1 GATATGCAATCTTAGATAA
26364632 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
26364648 AGATAAGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (19 bp):
GATATGCAATCTTAGATAA
Found at i:26364669 original size:23 final size:22
Alignment explanation
Indices: 26364594--26364670 Score: 76
Period size: 19 Copynumber: 3.7 Consensus size: 22
26364584 CTTAAAAAAG
*
26364594 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAA
26364613 GATATGCAATCTT---AGATAA
1 GATATGCAATCTTAGAAGATAA
26364632 GATATGCAATCTTAGAAGATAA
1 GATATGCAATCTTAGAAGATAA
* *
26364654 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
26364671 TATTTAATTT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 31 0.61
22 8 0.16
23 12 0.24
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAA
Found at i:26365522 original size:24 final size:24
Alignment explanation
Indices: 26365491--26365740 Score: 157
Period size: 24 Copynumber: 10.7 Consensus size: 24
26365481 GTGTATTGTA
*
26365491 TATTATTATTTTAGATTTATCATG
1 TATTATTATTTTAAATTTATCATG
* *
26365515 TTTTATTATTTGT-AATTTATCA-A
1 TATTATTATTT-TAAATTTATCATG
*
26365538 TATTATTATTTTAAATTCAT--TG
1 TATTATTATTTTAAATTTATCATG
**
26365560 TTAACATTATTTTAAATTTATCATG
1 -TATTATTATTTTAAATTTATCATG
*
26365585 TA-TATCTATTTCAAATTTATCAT-
1 TATTAT-TATTTTAAATTTATCATG
* * *
26365608 TAATA-T-TTTTAAATTTATTATA
1 TATTATTATTTTAAATTTATCATG
* ** *
26365630 TACTATTATTTTGGATTTATCACG
1 TATTATTATTTTAAATTTATCATG
*
26365654 TATGATTATTTTAGAA-TTATCAT-
1 TATTATTATTTTA-AATTTATCATG
* * *
26365677 CA-AAAT-TTTTAAATTTTAT-ATG
1 TATTATTATTTTAAA-TTTATCATG
* * *
26365699 TATTATTATTTCAAATTTATTATA
1 TATTATTATTTTAAATTTATCATG
*
26365723 TATTATTTATTGTAAATT
1 TATTA-TTATTTTAAATT
26365741 ATCCAATTCA
Statistics
Matches: 173, Mismatches: 34, Indels: 37
0.71 0.14 0.15
Matches are distributed among these distances:
20 2 0.01
21 20 0.12
22 13 0.08
23 46 0.27
24 78 0.45
25 14 0.08
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.56
Consensus pattern (24 bp):
TATTATTATTTTAAATTTATCATG
Found at i:26365664 original size:69 final size:68
Alignment explanation
Indices: 26365450--26365730 Score: 209
Period size: 69 Copynumber: 4.1 Consensus size: 68
26365440 TGTTTATACT
* * * * * *
26365450 TATTA-TT-AAATTAATCATTAATATTATCTAAGTGTATTGTATATTATTATTTTAGATTTATCA
1 TATTATTTCAAATTTATCATTAATATT-TTTAAATTTATTATATACTATTATTTTAGATTTATCA
*
26365513 TGTTT
65 TG-TA
** * * * * *
26365518 TATTATTTGTAATTTATCAATATTATTATTTTAAATTCATTGT-TAAC-ATTATTTTAAATTTAT
1 TATTATTTCAAATTTATCATTAATA-T-TTTTAAATTTATTATAT-ACTATTATTTTAGATTTAT
26365581 CATGTA
63 CATGTA
*
26365587 TATCTATTTCAAATTTATCATTAATATTTTTAAATTTATTATATACTATTATTTTGGATTTATCA
1 TAT-TATTTCAAATTTATCATTAATATTTTTAAATTTATTATATACTATTATTTTAGATTTATCA
*
26365652 CGTA
65 TGTA
* * * * * * *
26365656 TGATTATTTTAGAA-TTATCATCAAAATTTTTAAATTT-TATATGTATTATTATTTCAAATTTAT
1 T-ATTATTTCA-AATTTATCATTAATATTTTTAAATTTAT-TATATACTATTATTTTAGATTTAT
*
26365719 --TATA
63 CATGTA
26365723 TATTATTT
1 TATTATTT
26365731 ATTGTAAATT
Statistics
Matches: 172, Mismatches: 30, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
66 7 0.04
67 3 0.02
68 21 0.12
69 74 0.43
70 54 0.31
71 12 0.07
72 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.05, T:0.55
Consensus pattern (68 bp):
TATTATTTCAAATTTATCATTAATATTTTTAAATTTATTATATACTATTATTTTAGATTTATCAT
GTA
Found at i:26365816 original size:23 final size:23
Alignment explanation
Indices: 26365789--26365833 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
26365779 AATTGTACAT
*
26365789 TCATATATATTATTTGTTTTAAC
1 TCATATATATTATTTATTTTAAC
*
26365812 TCATATATATTGTTTATTTTAA
1 TCATATATATTATTTATTTTAA
26365834 AATTTTGAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (23 bp):
TCATATATATTATTTATTTTAAC
Found at i:26377741 original size:75 final size:76
Alignment explanation
Indices: 26377585--26377734 Score: 182
Period size: 75 Copynumber: 2.0 Consensus size: 76
26377575 AAGGTAGTCT
* * * * *
26377585 AAAGTTTATTTATTTAAATTACAAAAAACTCCTAAAATTAAAAATTGAAATAGCAAAAAGGTCAT
1 AAAGTTTATCTATTTAAATTAAAAAAAACTCATAAAATTAAAAATTAAAATAGCAAAAAAGTCAT
26377650 TACATAAATAC
66 TACATAAATAC
* *
26377661 AAAGTTTA-CTATTTAAATTGAAAAAAAAC-CATAAAATTGATAAA-TAAAAT-GACAAAAAATT
1 AAAGTTTATCTATTTAAATT-AAAAAAAACTCATAAAATT-AAAAATTAAAATAG-CAAAAAAGT
26377722 CATTACATAAATA
63 CATTACATAAATA
26377735 TGAAGTTATT
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
74 1 0.02
75 43 0.67
76 20 0.31
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.29
Consensus pattern (76 bp):
AAAGTTTATCTATTTAAATTAAAAAAAACTCATAAAATTAAAAATTAAAATAGCAAAAAAGTCAT
TACATAAATAC
Found at i:26378078 original size:33 final size:32
Alignment explanation
Indices: 26377949--26378111 Score: 122
Period size: 33 Copynumber: 5.1 Consensus size: 32
26377939 GAGTACGTCA
* *
26377949 GTGGATACGAGTCGGGAGGAGTGGAGTACGACG
1 GTGGATACGGGCCGGGAGGAGTGGAGTACGA-G
* * * *
26377982 ATGGATATGGACCGGGAGGAATGGAGTACGATG
1 GTGGATACGGGCCGGGAGGAGTGGAGTACGA-G
* *
26378015 GTGGATACGGGCC--GA--A--AGAGTACGGCG
1 GTGGATACGGGCCGGGAGGAGTGGAGTAC-GAG
* *
26378042 GTGGATACGGGCCGGAATGAGTGGAGTACTGAG
1 GTGGATACGGGCCGGGAGGAGTGGAGTAC-GAG
* * *
26378075 GTGGATACGAGCCGGGATGACTGGAGTACTGAG
1 GTGGATACGGGCCGGGAGGAGTGGAGTAC-GAG
26378108 GTGG
1 GTGG
26378112 TTGTGGGCTG
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
27 20 0.19
28 1 0.01
29 2 0.02
31 3 0.03
33 78 0.75
ACGTcount: A:0.25, C:0.13, G:0.45, T:0.17
Consensus pattern (32 bp):
GTGGATACGGGCCGGGAGGAGTGGAGTACGAG
Found at i:26378100 original size:93 final size:93
Alignment explanation
Indices: 26377938--26378111 Score: 210
Period size: 93 Copynumber: 1.9 Consensus size: 93
26377928 CAGAAGTAGT
* * * *
26377938 AGAGTACGTCAGTGGATACGAGTCGGGAGGAGTGGAGTACGACGATGGATATGGACCGGGAGGAA
1 AGAGTACGGCAGTGGATACGAGCCGGAAGGAGTGGAGTACGACGATGGATACGGACCGGGAGGAA
26378003 TGGAGTAC-GATGGTGGATACGGGCCGAA
66 TGGAGTACTGA-GGTGGATACGGGCCGAA
* * * * *
26378031 AGAGTACGGCGGTGGATACGGGCCGGAATGAGTGGAGTACTGA-GGTGGATAC-GAGCCGGGATG
1 AGAGTACGGCAGTGGATACGAGCCGGAAGGAGTGGAGTAC-GACGATGGATACGGA-CCGGGAGG
*
26378094 ACTGGAGTACTGAGGTGG
64 AATGGAGTACTGAGGTGG
26378112 TTGTGGGCTG
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
92 2 0.03
93 62 0.91
94 4 0.06
ACGTcount: A:0.26, C:0.13, G:0.44, T:0.17
Consensus pattern (93 bp):
AGAGTACGGCAGTGGATACGAGCCGGAAGGAGTGGAGTACGACGATGGATACGGACCGGGAGGAA
TGGAGTACTGAGGTGGATACGGGCCGAA
Found at i:26389164 original size:62 final size:61
Alignment explanation
Indices: 26389095--26389240 Score: 159
Period size: 67 Copynumber: 2.3 Consensus size: 61
26389085 AAAAAATTAC
* *** * *
26389095 ATTACTAAAAAAATCAC-AAAACGCTATACTAAACACTAACAATTTGTAACCTAATCTCATAA
1 ATTACTAAAAAAATAACTAAAACAAAATACAAAACACTAACAATTTCTAACCTAA--TCATAA
26389157 ATTACTAATAAAATAAATAACTAAAACAAAATACAAAACACTAACAATTTCTAACCTAATCATAA
1 ATTAC---TAAAA-AAATAACTAAAACAAAATACAAAACACTAACAATTTCTAACCTAATCATAA
* *
26389222 ACTACTAACAAAATAACTA
1 ATTACTAAAAAAATAACTA
26389241 TAAAATTATT
Statistics
Matches: 71, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
61 9 0.13
62 9 0.13
65 15 0.21
66 6 0.08
67 32 0.45
ACGTcount: A:0.55, C:0.19, G:0.01, T:0.25
Consensus pattern (61 bp):
ATTACTAAAAAAATAACTAAAACAAAATACAAAACACTAACAATTTCTAACCTAATCATAA
Found at i:26389171 original size:105 final size:102
Alignment explanation
Indices: 26388984--26389172 Score: 267
Period size: 105 Copynumber: 1.8 Consensus size: 102
26388974 TACATTATAT
26388984 AAAAATTACATTAAAAAAATCACAAAACACATAACTAAACACTAACAATTTATATAACCTAATCA
1 AAAAATTACATTAAAAAAATCACAAAACACATAACTAAACACTAACAATTTATATAACCTAATCA
*
26389049 TAAATTACTAACCAAATAACTATAAAATTATTTTTAA
66 TAAATTACTAACAAAATAACTATAAAATTATTTTTAA
* *
26389086 AAAAATTACATTACTAAAAAAATCACAAAACGC-TATACTAAACACTAACAA-TT-TGTAACCTA
1 AAAAATTACA-T--TAAAAAAATCACAAAACACATA-ACTAAACACTAACAATTTATATAACCTA
*
26389148 ATCTCATAAATTACTAATAAAATAA
62 A--TCATAAATTACTAACAAAATAA
26389173 ATAACTAAAA
Statistics
Matches: 77, Mismatches: 4, Indels: 9
0.86 0.04 0.10
Matches are distributed among these distances:
102 10 0.13
103 10 0.13
104 4 0.05
105 53 0.69
ACGTcount: A:0.55, C:0.16, G:0.01, T:0.28
Consensus pattern (102 bp):
AAAAATTACATTAAAAAAATCACAAAACACATAACTAAACACTAACAATTTATATAACCTAATCA
TAAATTACTAACAAAATAACTATAAAATTATTTTTAA
Found at i:26391991 original size:25 final size:24
Alignment explanation
Indices: 26391933--26391993 Score: 63
Period size: 25 Copynumber: 2.6 Consensus size: 24
26391923 TTTCCCTTTG
26391933 ATTTTGTTAAAC--AACAGAATTA
1 ATTTTGTTAAACAAAACAGAATTA
** * *
26391955 AAGTTCTGAAACAAAATCAGAATTA
1 ATTTTGTTAAACAAAA-CAGAATTA
26391980 ATTTTGTTAAACAA
1 ATTTTGTTAAACAA
26391994 CAGGGCTAAA
Statistics
Matches: 28, Mismatches: 8, Indels: 3
0.72 0.21 0.08
Matches are distributed among these distances:
22 8 0.29
24 2 0.07
25 18 0.64
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.33
Consensus pattern (24 bp):
ATTTTGTTAAACAAAACAGAATTA
Found at i:26393393 original size:31 final size:31
Alignment explanation
Indices: 26393326--26393412 Score: 106
Period size: 31 Copynumber: 2.8 Consensus size: 31
26393316 TTGAGAAGCC
** ** *
26393326 CTTATTTGAGTTCTTTCAAAAAGGCTTGGTT
1 CTTATTTGAGCACTTTCAAAAAGTTTTGCTT
26393357 CTTATTTGAGCACTTTCAAAAAGTTTTGACTT
1 CTTATTTGAGCACTTTCAAAAAGTTTTG-CTT
26393389 -TTATTTGAGCACTTT-AAAAAGTTT
1 CTTATTTGAGCACTTTCAAAAAGTTT
26393413 GGTCCTCATG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
30 9 0.18
31 39 0.78
32 2 0.04
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.45
Consensus pattern (31 bp):
CTTATTTGAGCACTTTCAAAAAGTTTTGCTT
Found at i:26396193 original size:27 final size:27
Alignment explanation
Indices: 26396150--26396318 Score: 232
Period size: 27 Copynumber: 6.2 Consensus size: 27
26396140 AGCTTAGGCT
* *
26396150 GTAAAAGTTATCGAAATATCCTC-AAGGG
1 GTAAAAG-TACCGAAATACCCTCGAA-GG
* *
26396178 GTAAAATTATCGAAATACCCTCGAAGG
1 GTAAAAGTACCGAAATACCCTCGAAGG
*
26396205 GTAAAAGTACCGAAATACCTTCGAAGG
1 GTAAAAGTACCGAAATACCCTCGAAGG
* *
26396232 GTAAAATTATCGAAATACCCTCGAAGG
1 GTAAAAGTACCGAAATACCCTCGAAGG
*
26396259 GTAAAAGTACCAAAATACCCTCGAAGG
1 GTAAAAGTACCGAAATACCCTCGAAGG
26396286 GTAAAAGTACCGAAATACCCTCGAAGG
1 GTAAAAGTACCGAAATACCCTCGAAGG
*
26396313 ATAAAA
1 GTAAAA
26396319 AAGGTTTCCA
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
27 119 0.94
28 8 0.06
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.20
Consensus pattern (27 bp):
GTAAAAGTACCGAAATACCCTCGAAGG
Found at i:26396286 original size:81 final size:82
Alignment explanation
Indices: 26396150--26396318 Score: 261
Period size: 81 Copynumber: 2.1 Consensus size: 82
26396140 AGCTTAGGCT
* * * *
26396150 GTAAAAGTTATCGAAATATCCTCAAGGGGTAAAATTATCGAAATACCCTCGAAGGGTAAAAGTAC
1 GTAAAAGTTATCGAAATACCCTCAAGGGGTAAAAGTACCAAAATACCCTCGAAGGGTAAAAGTAC
*
26396215 CGAAATACCTTCGAAGG
66 CGAAATACCCTCGAAGG
26396232 GTAAAA-TTATCGAAATACCCTCGAA-GGGTAAAAGTACCAAAATACCCTCGAAGGGTAAAAGTA
1 GTAAAAGTTATCGAAATACCCTC-AAGGGGTAAAAGTACCAAAATACCCTCGAAGGGTAAAAGTA
26396295 CCGAAATACCCTCGAAGG
65 CCGAAATACCCTCGAAGG
*
26396313 ATAAAA
1 GTAAAA
26396319 AAGGTTTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
81 72 0.90
82 8 0.10
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.20
Consensus pattern (82 bp):
GTAAAAGTTATCGAAATACCCTCAAGGGGTAAAAGTACCAAAATACCCTCGAAGGGTAAAAGTAC
CGAAATACCCTCGAAGG
Found at i:26402148 original size:16 final size:17
Alignment explanation
Indices: 26402127--26402158 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26402117 CTTTGTCGAA
26402127 TTTCCC-TTTCTTTTTC
1 TTTCCCTTTTCTTTTTC
26402143 TTTCCCTTTTCTTTTT
1 TTTCCCTTTTCTTTTT
26402159 TTTTACTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTCCCTTTTCTTTTTC
Found at i:26403603 original size:32 final size:32
Alignment explanation
Indices: 26403561--26403697 Score: 177
Period size: 32 Copynumber: 4.3 Consensus size: 32
26403551 TACAAGCCAT
**
26403561 AAGCCATCAGTAGTAGTAATATGATCGACACA
1 AAGCCATCAGTAACAGTAATATGATCGACACA
* * **
26403593 TAGCCATCAGTAACAGTAATATGACCGGTACA
1 AAGCCATCAGTAACAGTAATATGATCGACACA
*
26403625 AAGCCATCAGTAACGGTAATATGATC-AGCACA
1 AAGCCATCAGTAACAGTAATATGATCGA-CACA
* *
26403657 AAGCCATCAGTAACGGTAATACGATCGACACA
1 AAGCCATCAGTAACAGTAATATGATCGACACA
26403689 AAGCCATCA
1 AAGCCATCA
26403698 ATAGCATCGC
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
32 90 0.99
33 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.18, T:0.19
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTAATATGATCGACACA
Found at i:26403879 original size:24 final size:24
Alignment explanation
Indices: 26403846--26403920 Score: 87
Period size: 24 Copynumber: 3.1 Consensus size: 24
26403836 CCATGCTCAG
*
26403846 AATCAGTCATACAAATCATAAACA
1 AATCAATCATACAAATCATAAACA
* * *
26403870 AATCAATCATACTAATCACATACA
1 AATCAATCATACAAATCATAAACA
** *
26403894 AATCAATCATTTAAATCATAGACA
1 AATCAATCATACAAATCATAAACA
26403918 AAT
1 AAT
26403921 TAGACATTTA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.52, C:0.20, G:0.03, T:0.25
Consensus pattern (24 bp):
AATCAATCATACAAATCATAAACA
Found at i:26403919 original size:48 final size:48
Alignment explanation
Indices: 26403858--26403954 Score: 117
Period size: 48 Copynumber: 2.0 Consensus size: 48
26403848 TCAGTCATAC
*
26403858 AAATCATAAACAAATCA-ATCATACTA-ATCACATACAAATCAATCATTT
1 AAATCATAAACAAATCAGA-CAT-CTACATCACAGACAAATCAATCATTT
* * * *
26403906 AAATCATAGACAAATTAGACATTTACATCACGGACAAATCAATCATTT
1 AAATCATAAACAAATCAGACATCTACATCACAGACAAATCAATCATTT
26403954 A
1 A
26403955 CACTTGAGGG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
47 2 0.05
48 39 0.93
49 1 0.02
ACGTcount: A:0.49, C:0.20, G:0.04, T:0.27
Consensus pattern (48 bp):
AAATCATAAACAAATCAGACATCTACATCACAGACAAATCAATCATTT
Found at i:26403952 original size:24 final size:24
Alignment explanation
Indices: 26403867--26403956 Score: 94
Period size: 24 Copynumber: 3.8 Consensus size: 24
26403857 CAAATCATAA
* *
26403867 ACAAATCAATCATACTA-ATCACAT
1 ACAAATCAATCAT-TTACATCACAG
* *
26403891 ACAAATCAATCATTTAAATCATAG
1 ACAAATCAATCATTTACATCACAG
* *
26403915 ACAAATTAGA-CATTTACATCACGG
1 ACAAATCA-ATCATTTACATCACAG
26403939 ACAAATCAATCATTTACA
1 ACAAATCAATCATTTACA
26403957 CTTGAGGGGC
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
23 3 0.05
24 51 0.93
25 1 0.02
ACGTcount: A:0.48, C:0.21, G:0.04, T:0.27
Consensus pattern (24 bp):
ACAAATCAATCATTTACATCACAG
Found at i:26404013 original size:27 final size:27
Alignment explanation
Indices: 26403974--26404382 Score: 379
Period size: 27 Copynumber: 15.2 Consensus size: 27
26403964 GGCAAAATAG
* * *
26403974 TTTACCCTCTAGGGGCATTACGGTTAT
1 TTTACCCTATAGGGGTATTACGGTCAT
* *
26404001 TTTACCTTATAGGGGTATTACGGTAAT
1 TTTACCCTATAGGGGTATTACGGTCAT
* * * * * * *
26404028 TTTATCTTACAAGGGCATTACGATTAT
1 TTTACCCTATAGGGGTATTACGGTCAT
* * *
26404055 TTTACCCTACAGGAGTATTACAGTCAT
1 TTTACCCTATAGGGGTATTACGGTCAT
* * ** * *
26404082 TTAACCTTATAGCAGTATTACAGTTAT
1 TTTACCCTATAGGGGTATTACGGTCAT
* * *
26404109 TTTACCCTTTAGGGGCATTACTGTCAT
1 TTTACCCTATAGGGGTATTACGGTCAT
*
26404136 TTTACCCTACAGGGGTATTACGGTCAT
1 TTTACCCTATAGGGGTATTACGGTCAT
* * * *
26404163 TTAACCCTATAAGGGTATTATGATCAT
1 TTTACCCTATAGGGGTATTACGGTCAT
* *
26404190 TTTACCCTACAGGGGCATTACGGTCAT
1 TTTACCCTATAGGGGTATTACGGTCAT
* * *
26404217 TTTATCCTACAGGGGTATTACGATCAT
1 TTTACCCTATAGGGGTATTACGGTCAT
* ** * *
26404244 TTAACCCTATAAAGGTCTAACGGTCAT
1 TTTACCCTATAGGGGTATTACGGTCAT
* * *
26404271 TTTACCCTACAGGGGCATTACGGTTAT
1 TTTACCCTATAGGGGTATTACGGTCAT
* *
26404298 TTTACCCTATAGGGGTATTTCAGTCAT
1 TTTACCCTATAGGGGTATTACGGTCAT
* *
26404325 TTAACCCTATAGGGGTATTATGGTCA-
1 TTTACCCTATAGGGGTATTACGGTCAT
* *
26404351 TTTACCCTATAGGGGCATTAGGGTCAT
1 TTTACCCTATAGGGGTATTACGGTCAT
26404378 TTTAC
1 TTTAC
26404383 AAATATTGGG
Statistics
Matches: 304, Mismatches: 77, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
26 23 0.08
27 281 0.92
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
TTTACCCTATAGGGGTATTACGGTCAT
Found at i:26404394 original size:81 final size:81
Alignment explanation
Indices: 26403974--26404382 Score: 457
Period size: 81 Copynumber: 5.1 Consensus size: 81
26403964 GGCAAAATAG
* * * * * * * * *
26403974 TTTACCCT-CTAGGGGCATTACGGTTATTTTACCTTATAGGGGTATTACGGTAATTTTATCTTAC
1 TTTACCCTAC-AGGGGTATTACAGTCATTTAACCCTATAAGGGTATTACGGTCATTTTACCCTAC
* * *
26404038 AAGGGCATTACGATTAT
65 AGGGGCATTACGGTCAT
* * * * * **
26404055 TTTACCCTACAGGAGTATTACAGTCATTTAACCTTAT-AGCAGTATTACAGTTATTTTACCCTTT
1 TTTACCCTACAGGGGTATTACAGTCATTTAACCCTATAAG-GGTATTACGGTCATTTTACCCTAC
*
26404119 AGGGGCATTACTGTCAT
65 AGGGGCATTACGGTCAT
* * *
26404136 TTTACCCTACAGGGGTATTACGGTCATTTAACCCTATAAGGGTATTATGATCATTTTACCCTACA
1 TTTACCCTACAGGGGTATTACAGTCATTTAACCCTATAAGGGTATTACGGTCATTTTACCCTACA
26404201 GGGGCATTACGGTCAT
66 GGGGCATTACGGTCAT
* * * *
26404217 TTTATCCTACAGGGGTATTAC-GATCATTTAACCCTATAAAGGTCTAACGGTCATTTTACCCTAC
1 TTTACCCTACAGGGGTATTACAG-TCATTTAACCCTATAAGGGTATTACGGTCATTTTACCCTAC
*
26404281 AGGGGCATTACGGTTAT
65 AGGGGCATTACGGTCAT
* * * * *
26404298 TTTACCCTATAGGGGTATTTCAGTCATTTAACCCTATAGGGGTATTATGGTCA-TTTACCCTATA
1 TTTACCCTACAGGGGTATTACAGTCATTTAACCCTATAAGGGTATTACGGTCATTTTACCCTACA
*
26404362 GGGGCATTAGGGTCAT
66 GGGGCATTACGGTCAT
26404378 TTTAC
1 TTTAC
26404383 AAATATTGGG
Statistics
Matches: 277, Mismatches: 46, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
80 31 0.11
81 242 0.87
82 4 0.01
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (81 bp):
TTTACCCTACAGGGGTATTACAGTCATTTAACCCTATAAGGGTATTACGGTCATTTTACCCTACA
GGGGCATTACGGTCAT
Found at i:26406589 original size:27 final size:27
Alignment explanation
Indices: 26406549--26406835 Score: 292
Period size: 27 Copynumber: 10.7 Consensus size: 27
26406539 TTGGGCTGTA
*
26406549 AAAATTACCGAAATACCCTCGAAGGGT
1 AAAATTATCGAAATACCCTCGAAGGGT
* * * *
26406576 AGAATTATTGAAATACCTTCGAAAGGT
1 AAAATTATCGAAATACCCTCGAAGGGT
* * ** *
26406603 AAAATTACCGAAATACCTTTAAAAGGT
1 AAAATTATCGAAATACCCTCGAAGGGT
* * * *
26406630 CAAATTA-CTAAAATACCCCCGCAGGGT
1 AAAATTATC-GAAATACCCTCGAAGGGT
26406657 AAAATTATCGAAATACCCTCGAAGGGT
1 AAAATTATCGAAATACCCTCGAAGGGT
*
26406684 AAAATTATCGAAATACACTCGAAGGGT
1 AAAATTATCGAAATACCCTCGAAGGGT
* ** * *
26406711 AAAATTATTGAAATACATTCAAAGGAT
1 AAAATTATCGAAATACCCTCGAAGGGT
** *
26406738 AAAATTATTAAAATACCCTCCAAGGGT
1 AAAATTATCGAAATACCCTCGAAGGGT
* *
26406765 AAAATTACCGAAATATCCTCGAAGGGT
1 AAAATTATCGAAATACCCTCGAAGGGT
* *
26406792 AAAATTACCGAAATACCC-CTAAAGGGT
1 AAAATTATCGAAATACCCTC-GAAGGGT
26406819 AAAATT-TCGAAATACCC
1 AAAATTATCGAAATACCC
26406836 CTAGGAGATG
Statistics
Matches: 217, Mismatches: 40, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
26 12 0.06
27 204 0.94
28 1 0.00
ACGTcount: A:0.44, C:0.18, G:0.15, T:0.23
Consensus pattern (27 bp):
AAAATTATCGAAATACCCTCGAAGGGT
Found at i:26407058 original size:26 final size:26
Alignment explanation
Indices: 26407017--26407120 Score: 138
Period size: 26 Copynumber: 4.0 Consensus size: 26
26407007 TTTGCCATAA
* *
26407017 ATTACTGTTACTGGCAACTTTGCTGC
1 ATTACTGATACTGGCAGCTTTGCTGC
* *
26407043 GA-TATTGATACTGGCAGCTCTGCTGC
1 -ATTACTGATACTGGCAGCTTTGCTGC
* *
26407069 ATTACTGTTACTTGCAGCTTTGCTGC
1 ATTACTGATACTGGCAGCTTTGCTGC
26407095 ATTACTGATACTGGCAGCTTTGCTGC
1 ATTACTGATACTGGCAGCTTTGCTGC
26407121 GATATTGGTG
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
25 1 0.02
26 64 0.97
27 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
ATTACTGATACTGGCAGCTTTGCTGC
Found at i:26407104 original size:52 final size:52
Alignment explanation
Indices: 26407017--26407120 Score: 156
Period size: 52 Copynumber: 2.0 Consensus size: 52
26407007 TTTGCCATAA
*
26407017 ATTACTGTTACTGGCAACTTTGCTGCGATATTGATACTGGCAGCTCTGCTGC
1 ATTACTGTTACTGGCAACTTTGCTGCGATACTGATACTGGCAGCTCTGCTGC
* * *
26407069 ATTACTGTTACTTGCAGCTTTGCTGC-ATTACTGATACTGGCAGCTTTGCTGC
1 ATTACTGTTACTGGCAACTTTGCTGCGA-TACTGATACTGGCAGCTCTGCTGC
26407121 GATATTGGTG
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
51 1 0.02
52 46 0.98
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (52 bp):
ATTACTGTTACTGGCAACTTTGCTGCGATACTGATACTGGCAGCTCTGCTGC
Found at i:26407298 original size:30 final size:30
Alignment explanation
Indices: 26407229--26407315 Score: 124
Period size: 28 Copynumber: 2.9 Consensus size: 30
26407219 TGCATTTGTA
*
26407229 CTGATTACTGTTTTGGGCTAAGGCCCACACT
1 CTGA-TACTGTATTGGGCTAAGGCCCACACT
*
26407260 AT--TACTGTATTGGGCTAAGGCCCACACT
1 CTGATACTGTATTGGGCTAAGGCCCACACT
*
26407288 CTGATACTGTATTGGGCTATGGCCCACA
1 CTGATACTGTATTGGGCTAAGGCCCACA
26407316 TACTGCTACT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
28 26 0.52
30 23 0.46
31 1 0.02
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (30 bp):
CTGATACTGTATTGGGCTAAGGCCCACACT
Found at i:26407326 original size:30 final size:30
Alignment explanation
Indices: 26407234--26407327 Score: 124
Period size: 30 Copynumber: 3.2 Consensus size: 30
26407224 TTGTACTGAT
*
26407234 TACTGTTTTGGGCTAAGGCCCACACTA-T-
1 TACTGTATTGGGCTAAGGCCCACACTACTG
26407262 TACTGTATTGGGCTAAGGCCCACACT-CTG
1 TACTGTATTGGGCTAAGGCCCACACTACTG
*
26407291 ATACTGTATTGGGCTATGGCCCACA-TACTG
1 -TACTGTATTGGGCTAAGGCCCACACTACTG
26407321 CTACTGT
1 -TACTGT
26407328 TTAAGGCTCA
Statistics
Matches: 59, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
28 26 0.44
29 1 0.02
30 32 0.54
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (30 bp):
TACTGTATTGGGCTAAGGCCCACACTACTG
Found at i:26408507 original size:21 final size:21
Alignment explanation
Indices: 26408483--26408526 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
26408473 GCTATGCATG
26408483 CATGAAAAATTTATGAGATTT
1 CATGAAAAATTTATGAGATTT
26408504 CATGAAAAATTTATGAGATTT
1 CATGAAAAATTTATGAGATTT
26408525 CA
1 CA
26408527 ACTATTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (21 bp):
CATGAAAAATTTATGAGATTT
Found at i:26416296 original size:159 final size:160
Alignment explanation
Indices: 26416095--26416385 Score: 426
Period size: 161 Copynumber: 1.8 Consensus size: 160
26416085 AAGAGTTTAT
26416095 ATTTTTAAAATAAAAATATTTTTTAAAATCATATTAAAGGAAAAGTTTAA-ATTCTTAAAACAAA
1 ATTTTTAAAATAAAAATATTTTTTAAAATCATATTAAAGGAAAAGTTTAATATTCTTAAAACAAA
26416159 GTTTTGATCTTCT-TCAACTATTTCAAAATAAAATTTTGATTTTTAAGAAAAATAGTGATTTTTT
66 GTTTTGATCTT-TGTCAACTATTTCAAAATAAAATTTTGATTTTTAAGAAAAATAGTGATTTTTT
26416223 AATAAAAAAAAAAAAGGAAGAGAAAGTTCAG
130 AATAAAAAAAAAAAAGGAAGAGAAAGTTCAG
* * * * * *
26416254 ATTTTTAAAATAAATATATGTTTTT-TAGTCATTTTAAAGGAAAAGTTTAATTTTTTTTAAAACA
1 ATTTTTAAAATAAAAATAT-TTTTTAAAATCATATTAAAGGAAAAGTTTAA-TATTCTTAAAACA
* ** * * *
26416318 AAGTTTTGATCTTTGTCAATTATTTTGAAATAAATTTTTTATTTTTAAGAAAAGTAGTGATTTTT
64 AAGTTTTGATCTTTGTCAACTATTTCAAAATAAAATTTTGATTTTTAAGAAAAATAGTGATTTTT
26416383 TAA
129 TAA
26416386 AAGAAAACTT
Statistics
Matches: 116, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
159 40 0.34
160 6 0.05
161 70 0.60
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.43
Consensus pattern (160 bp):
ATTTTTAAAATAAAAATATTTTTTAAAATCATATTAAAGGAAAAGTTTAATATTCTTAAAACAAA
GTTTTGATCTTTGTCAACTATTTCAAAATAAAATTTTGATTTTTAAGAAAAATAGTGATTTTTTA
ATAAAAAAAAAAAAGGAAGAGAAAGTTCAG
Found at i:26426336 original size:15 final size:14
Alignment explanation
Indices: 26426313--26426343 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
26426303 AAAAACAATA
26426313 AAACCAAAAAAAAG
1 AAACCAAAAAAAAG
26426327 AAACCAAAAAAAAG
1 AAACCAAAAAAAAG
26426341 AAA
1 AAA
26426344 GAAAAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.81, C:0.13, G:0.06, T:0.00
Consensus pattern (14 bp):
AAACCAAAAAAAAG
Found at i:26426349 original size:14 final size:14
Alignment explanation
Indices: 26426293--26426351 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
26426283 TTGCCTAAAT
*
26426293 AAAAAGAAAGAAAA
1 AAAAAGAAACAAAA
* *
26426307 ACAATA-AAACCAAA
1 A-AAAAGAAACAAAA
*
26426321 AAAAAGAAACCAAA
1 AAAAAGAAACAAAA
*
26426335 AAAAAGAAAGAAAA
1 AAAAAGAAACAAAA
26426349 AAA
1 AAA
26426352 TAGTGAGAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
13 3 0.08
14 31 0.84
15 3 0.08
ACGTcount: A:0.81, C:0.08, G:0.08, T:0.02
Consensus pattern (14 bp):
AAAAAGAAACAAAA
Found at i:26426815 original size:42 final size:42
Alignment explanation
Indices: 26426756--26427184 Score: 525
Period size: 42 Copynumber: 10.2 Consensus size: 42
26426746 AAGGAAAACA
** *
26426756 TTCATTGCATTTAGAGGCATAGGTGTGGAGGTCTATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * *
26426798 TTCATTACATTTAGAGGCCCAGGCGTAGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * *
26426840 TTTATTGCATTTAAAGGCCCAAGTGTGGAGGTCTATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
26426882 TTCATTGCATTTAGAGGCCCAGGTGTAGAGGTCTATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * *
26426924 TTTATTGTATTTAGAGGCCCAAGTGTGGAGTTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * *
26426966 TTCATTGCATTTAGAGGCCTATGTGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * *
26427008 TTTATTGCATTTAGAGGCCCAAGTGTGGAGGTCCATTCACTC
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * * *
26427050 TTCATTGCATTTAGAGACTCAGGTGTGGAGGTTCATTCATTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * **
26427092 TTCATTGCATTTAGAGACCCAGGTGTGGAAGTCTGTTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * * *
26427134 TCCATTGCATTTAAAAGCCCAAGTATGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
26427176 TTCATTGCA
1 TTCATTGCA
26427185 ATGTATATGA
Statistics
Matches: 330, Mismatches: 57, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 330 1.00
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.38
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
Found at i:26428311 original size:156 final size:155
Alignment explanation
Indices: 26428016--26428313 Score: 447
Period size: 156 Copynumber: 1.9 Consensus size: 155
26428006 TTTTTAAAAA
* *
26428016 AAGAGAAAGTTTATATTTGTAAAATAAAAATATGTTTTTTAGTCATATTAAAAGAAATGTTTAAA
1 AAGAGAAAGTTTAGATTTGTAAAATAAAAATATGTTTTATAGTCATATTAAAAGAAATGTTTAAA
* *
26428081 TTCTTAAAACAAAATTTTGACCTTTTTCAACTATTTCAAAATAAAATTTTTATTTTTAAGAAAAA
66 TTCTTAAAACAAAATTTTGACCTTATTCAACTATTTCAAAATAAAATTTTGATTTTTAAGAAAAA
*
26428146 TAGTGATTTTTTTTAAAAAAAAGAG
131 TAATGATTTTTTTTAAAAAAAAGAG
* *
26428171 AAGAGAAAGTTTAGATTT-TGAAAATAAAAATATGTTTTATAGTCATTTTAAAGGAAAAT-TTTA
1 AAGAGAAAGTTTAGATTTGT-AAAATAAAAATATGTTTTATAGTCATATTAAAAG-AAATGTTTA
* * * * *
26428234 AATTTTTTAAAACAAATTTTTGATCTTATTCAACTATTTCAAAATAAAGTTTTGATTTTTAGGAA
64 AA-TTCTTAAAACAAAATTTTGACCTTATTCAACTATTTCAAAATAAAATTTTGATTTTTAAGAA
26428299 AAATAATGATTTTTT
128 AAATAATGATTTTTT
26428314 AAAGAAAACT
Statistics
Matches: 128, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
154 1 0.01
155 54 0.42
156 73 0.57
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.42
Consensus pattern (155 bp):
AAGAGAAAGTTTAGATTTGTAAAATAAAAATATGTTTTATAGTCATATTAAAAGAAATGTTTAAA
TTCTTAAAACAAAATTTTGACCTTATTCAACTATTTCAAAATAAAATTTTGATTTTTAAGAAAAA
TAATGATTTTTTTTAAAAAAAAGAG
Found at i:26429485 original size:32 final size:32
Alignment explanation
Indices: 26429443--26429518 Score: 127
Period size: 32 Copynumber: 2.4 Consensus size: 32
26429433 GACCAAAATT
*
26429443 TCAAAGTTATTTTTCCAGATTTTAATGAGATC
1 TCAAACTTATTTTTCCAGATTTTAATGAGATC
*
26429475 TCAAACTTATTTTTCCATATTTTAATGAGATC
1 TCAAACTTATTTTTCCAGATTTTAATGAGATC
26429507 TCAAAC-TATTTT
1 TCAAACTTATTTT
26429519 AAAATTCAGC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
31 6 0.14
32 36 0.86
ACGTcount: A:0.32, C:0.14, G:0.08, T:0.46
Consensus pattern (32 bp):
TCAAACTTATTTTTCCAGATTTTAATGAGATC
Found at i:26436859 original size:42 final size:42
Alignment explanation
Indices: 26436812--26436909 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 42
26436802 GTGTCTTCAC
* *** *
26436812 TCGTGTAACTCACTAAGTAGGGTCACACAGCCATGTTGTAGG
1 TCGTGTAACTCACTAACTAGCCACACACAGCCATGTCGTAGG
* * *
26436854 TCGTGTAACTCTCTGACTTGCCACACACAGCCATGTCGTAGG
1 TCGTGTAACTCACTAACTAGCCACACACAGCCATGTCGTAGG
*
26436896 CCGTGTAACTCACT
1 TCGTGTAACTCACT
26436910 GACTTAAAAC
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (42 bp):
TCGTGTAACTCACTAACTAGCCACACACAGCCATGTCGTAGG
Found at i:26436912 original size:42 final size:42
Alignment explanation
Indices: 26436835--26436914 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
26436825 TAAGTAGGGT
* * *
26436835 CACACAGCCATGTTGTAGGTCGTGTAACTCTCTGACTTGCCA
1 CACACAGCCATGTCGTAGGCCGTGTAACTCACTGACTTGCCA
26436877 CACACAGCCATGTCGTAGGCCGTGTAACTCACTGACTT
1 CACACAGCCATGTCGTAGGCCGTGTAACTCACTGACTT
26436915 AAAACACTAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (42 bp):
CACACAGCCATGTCGTAGGCCGTGTAACTCACTGACTTGCCA
Found at i:26448889 original size:53 final size:53
Alignment explanation
Indices: 26448820--26448926 Score: 205
Period size: 53 Copynumber: 2.0 Consensus size: 53
26448810 TTTATGTTGG
*
26448820 GCTGCTATACCTATTGCATTTGATTTTAGTTTGAATGCTTTGATTTAAGTAAA
1 GCTGCTATACCTATTGCATTTGATTTTAGGTTGAATGCTTTGATTTAAGTAAA
26448873 GCTGCTATACCTATTGCATTTGATTTTAGGTTGAATGCTTTGATTTAAGTAAA
1 GCTGCTATACCTATTGCATTTGATTTTAGGTTGAATGCTTTGATTTAAGTAAA
26448926 G
1 G
26448927 ATGGAATAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.26, C:0.11, G:0.19, T:0.44
Consensus pattern (53 bp):
GCTGCTATACCTATTGCATTTGATTTTAGGTTGAATGCTTTGATTTAAGTAAA
Found at i:26465780 original size:38 final size:38
Alignment explanation
Indices: 26465716--26465793 Score: 129
Period size: 38 Copynumber: 2.1 Consensus size: 38
26465706 AGGTAATGAC
*
26465716 TTTACACCTCTTCGATCATTACCCTGTAAGTAAATTCA
1 TTTACACCTCTTCAATCATTACCCTGTAAGTAAATTCA
* *
26465754 TTTACACCTCTTCAATTATTATCCTGTAAGTAAATTCA
1 TTTACACCTCTTCAATCATTACCCTGTAAGTAAATTCA
26465792 TT
1 TT
26465794 CGGCTTCATG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.23, G:0.06, T:0.41
Consensus pattern (38 bp):
TTTACACCTCTTCAATCATTACCCTGTAAGTAAATTCA
Found at i:26466415 original size:210 final size:206
Alignment explanation
Indices: 26465919--26466504 Score: 654
Period size: 207 Copynumber: 2.8 Consensus size: 206
26465909 CTTCAGCAAC
* * * * *
26465919 CATCTTACTAAGCAAGCTTGTTGCTTCTCCACATTGT-CCTGAATTGCATAATCCATGTATTAAA
1 CATCCTACTAAACAAGCTTGTCGCTTCTCCACATT-TACCTGAATTGCACAATCCAAGTATTAAA
* * * * * * *** *
26465983 CTACTGTAGGTGACGATGTCTGGTTTCAGATCTCTCTGAATCATTAATTTGTACAAGGTAATGGC
65 CAACTGTAGGTGACAATGTCAGGTTT-ACATCTCTCTGACTCATTAGTTCCAACATGGTAATGGC
* * * *
26466048 TTCTTCAATCTTTTTTTCTTTGCACAAAGCATTGATTAAAGAGCTTAAGGTTTCCACATCAGGCT
129 TTCTTCAATCTTCTTTTCCTTGCACAAAGCATTGATTAAACAGCTTAAAGTTTCCACATCAGGCT
26466113 GGACTCCATTCAA
194 GGACTCCATTCAA
* * * * * ** * * *
26466126 CATCCTACTAAACAAGCTAGCCACTCCTGCACAACTACCTAAACTCCACAATCCAAGTATTAAA-
1 CATCCTACTAAACAAGCTTGTCGCTTCTCCACATTTACCTGAATTGCACAATCCAAGTATTAAAC
* * * *
26466190 AAGCAGTGGGTGACAATGTCAGGTATTACATTTCTCTGACTCATTAGTTCCAACATGCTAATGGC
66 AA-CTGTAGGTGACAATGTCAGGT-TTACATCTCTCTGACTCATTAGTTCCAACATGGTAATGGC
* * * * * *
26466255 TTCTTCATTCTTGTTTTCCTTGTACAAAGCATTCATTAAACATCTTAAAGTTTCCATATCAGGCT
129 TTCTTCAATCTTCTTTTCCTTGCACAAAGCATTGATTAAACAGCTTAAAGTTTCCACATCAGGCT
26466320 GGACTCCTCCATTCAA
194 GGA---CTCCATTCAA
* * * *
26466336 CATCCTACTAAACAAGCTTGTGGCTTCTTCACATTTATCTGAATTGCACAATCCACGTATTAAAC
1 CATCCTACTAAACAAGCTTGTCGCTTCTCCACATTTACCTGAATTGCACAATCCAAGTATTAAAC
* *
26466401 AATTGTAGGTGACAATGTCAGGTTTTACACCTCTCTGACTCATTAGTTCCAACATGGTAATGGCT
66 AACTGTAGGTGACAATGTCAGG-TTTACATCTCTCTGACTCATTAGTTCCAACATGGTAATGGCT
* * *
26466466 TCTTCAGTCCTCTTTTCCTTGCACAAGGCATTGATTAAA
130 TCTTCAATCTTCTTTTCCTTGCACAAAGCATTGATTAAA
26466505 GAATTGAAAG
Statistics
Matches: 308, Mismatches: 63, Indels: 13
0.80 0.16 0.03
Matches are distributed among these distances:
206 2 0.01
207 152 0.49
208 2 0.01
210 149 0.48
211 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.34
Consensus pattern (206 bp):
CATCCTACTAAACAAGCTTGTCGCTTCTCCACATTTACCTGAATTGCACAATCCAAGTATTAAAC
AACTGTAGGTGACAATGTCAGGTTTACATCTCTCTGACTCATTAGTTCCAACATGGTAATGGCTT
CTTCAATCTTCTTTTCCTTGCACAAAGCATTGATTAAACAGCTTAAAGTTTCCACATCAGGCTGG
ACTCCATTCAA
Found at i:26466535 original size:210 final size:210
Alignment explanation
Indices: 26465919--26466790 Score: 729
Period size: 210 Copynumber: 4.2 Consensus size: 210
26465909 CTTCAGCAAC
* * * * *
26465919 CATCTTACTAAGCAAGCTTGTTGCTTCTCCACATTGT-CCTGAATTGCATAATCCATGTATTAAA
1 CATCCTACTAAACAAGCTTGTTGCTTCTTCACATT-TACCTGAACTGCACAATCCATGTATTAAA
* * * * * * *** *
26465983 CTACTGTAGGTGACGATGTCTGGTTTCAGATCTCTCTGAATCATTAATTTGTACAAGGTAATGGC
65 CAACTGTAGGTGACAATGTCAGGTTTTACATCTCTCTGACTCATTAATTCCAACATGGTAATGGC
* * * * * * * *
26466048 TTCTTCAATCTTTTTTTCTTTGCACAAAGCATTGATTAAAGAGCTT-AAGGTTTCCACATCAGGC
130 TTCTTCAGTCCTCTTTTCCTTGCACAAAGCATTGATTAAAGA-ATTGAAAGTTACCACATCAGGA
26466112 TGGA---CTCCATTCAA
194 TGGACTCCTCCATTCAA
* *** * * ** * * *
26466126 CATCCTACTAAACAAGCTAGCCACTCCTGCACAACTACCTAAACTCCACAATCCAAGTATTAAA-
1 CATCCTACTAAACAAGCTTGTTGCTTCTTCACATTTACCTGAACTGCACAATCCATGTATTAAAC
* * * * * *
26466190 AAGCAGTGGGTGACAATGTCAGGTATTACATTTCTCTGACTCATTAGTTCCAACATGCTAATGGC
66 AA-CTGTAGGTGACAATGTCAGGTTTTACATCTCTCTGACTCATTAATTCCAACATGGTAATGGC
* * * * * * * * * *
26466255 TTCTTCATTCTTGTTTTCCTTGTACAAAGCATTCATTAAA-CATCTTAAAGTTTCCATATCAGGC
130 TTCTTCAGTCCTCTTTTCCTTGCACAAAGCATTGATTAAAGAAT-TGAAAGTTACCACATCAGGA
26466319 TGGACTCCTCCATTCAA
194 TGGACTCCTCCATTCAA
* * * *
26466336 CATCCTACTAAACAAGCTTGTGGCTTCTTCACATTTATCTGAATTGCACAATCCACGTATTAAAC
1 CATCCTACTAAACAAGCTTGTTGCTTCTTCACATTTACCTGAACTGCACAATCCATGTATTAAAC
* * *
26466401 AATTGTAGGTGACAATGTCAGGTTTTACACCTCTCTGACTCATTAGTTCCAACATGGTAATGGCT
66 AACTGTAGGTGACAATGTCAGGTTTTACATCTCTCTGACTCATTAATTCCAACATGGTAATGGCT
* * *
26466466 TCTTCAGTCCTCTTTTCCTTGCACAAGGCATTGATTAAAGAATTGAAAGTTACTACATCAAGATG
131 TCTTCAGTCCTCTTTTCCTTGCACAAAGCATTGATTAAAGAATTGAAAGTTACCACATCAGGATG
* *
26466531 GACTCCTGCATTCAT
196 GACTCCTCCATTCAA
* * * * * * * * * * * *
26466546 CATTCTATTGAGCACGGTTGTTGCTTCCGTC-CATTTGCCCGAACTGCA-AAACTCATATATTGA
1 CATCCTACTAAACAAGCTTGTTGCTT-CTTCACATTTACCTGAACTGCACAATC-CATGTATTAA
* ** * * * * ** *
26466609 ACAATTGTTTGTGACAACGTTAGGTTTTACATTTCTCTGTA-TCATTAATTCCAGCACAGTAAAG
64 ACAACTGTAGGTGACAATGTCAGGTTTTACATCTCTCTG-ACTCATTAATTCCAACATGGTAATG
** * * *
26466673 GCTTCTGAAGTCCTCTTTTCCTTGCATAAAGCATTGATTAAAGAATTGAAAGTCACAACATCAGG
128 GCTTCTTCAGTCCTCTTTTCCTTGCACAAAGCATTGATTAAAGAATTGAAAGTTACCACATCAGG
* *
26466738 ATGGACTCCTTCATTCAT
193 ATGGACTCCTCCATTCAA
* * * * * * *
26466756 CGTTCTATTGAGCAAGCTTGTTGTTTCTTCCCATT
1 CATCCTACTAAACAAGCTTGTTGCTTCTTCACATT
26466791 GCCCAGAATG
Statistics
Matches: 537, Mismatches: 115, Indels: 23
0.80 0.17 0.03
Matches are distributed among these distances:
205 1 0.00
206 3 0.01
207 149 0.28
209 6 0.01
210 370 0.69
211 8 0.01
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (210 bp):
CATCCTACTAAACAAGCTTGTTGCTTCTTCACATTTACCTGAACTGCACAATCCATGTATTAAAC
AACTGTAGGTGACAATGTCAGGTTTTACATCTCTCTGACTCATTAATTCCAACATGGTAATGGCT
TCTTCAGTCCTCTTTTCCTTGCACAAAGCATTGATTAAAGAATTGAAAGTTACCACATCAGGATG
GACTCCTCCATTCAA
Found at i:26479523 original size:19 final size:18
Alignment explanation
Indices: 26479499--26479569 Score: 64
Period size: 20 Copynumber: 4.2 Consensus size: 18
26479489 ATTCCAAAAA
*
26479499 TAATATTATTTTAATATCT
1 TAATATTAATTTAATA-CT
26479518 TAATATTTAATTTAATACT
1 TAATA-TTAATTTAATACT
26479537 T-ATATTAA--TAATA-T
1 TAATATTAATTTAATACT
*
26479551 T-TTATTAATTTAATA-T
1 TAATATTAATTTAATACT
26479567 TAA
1 TAA
26479570 AGTGATTTTC
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
14 8 0.18
15 5 0.11
16 7 0.16
17 4 0.09
18 3 0.07
19 8 0.18
20 10 0.22
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (18 bp):
TAATATTAATTTAATACT
Found at i:26479669 original size:101 final size:101
Alignment explanation
Indices: 26479557--26479778 Score: 444
Period size: 101 Copynumber: 2.2 Consensus size: 101
26479547 ATATTTTATT
26479557 AATTTAATATTAAAGTGATTTTCTTAGTATTAAATTTAATTTAATGTTTGTCTTGTAGATAAACA
1 AATTTAATATTAAAGTGATTTTCTTAGTATTAAATTTAATTTAATGTTTGTCTTGTAGATAAACA
26479622 TTCTATTATTTTAATAAGATTATAAATATTAGATTA
66 TTCTATTATTTTAATAAGATTATAAATATTAGATTA
26479658 AATTTAATATTAAAGTGATTTTCTTAGTATTAAATTTAATTTAATGTTTGTCTTGTAGATAAACA
1 AATTTAATATTAAAGTGATTTTCTTAGTATTAAATTTAATTTAATGTTTGTCTTGTAGATAAACA
26479723 TTCTATTATTTTAATAAGATTATAAATATTAGATTA
66 TTCTATTATTTTAATAAGATTATAAATATTAGATTA
26479759 AATTTAATATTAAAGTGATT
1 AATTTAATATTAAAGTGATT
26479779 AAATTTAATC
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 121 1.00
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.48
Consensus pattern (101 bp):
AATTTAATATTAAAGTGATTTTCTTAGTATTAAATTTAATTTAATGTTTGTCTTGTAGATAAACA
TTCTATTATTTTAATAAGATTATAAATATTAGATTA
Found at i:26481158 original size:15 final size:15
Alignment explanation
Indices: 26481140--26481169 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26481130 TCATAACTTT
*
26481140 TTTACATTATTTATA
1 TTTAAATTATTTATA
26481155 TTTAAATTATTTATA
1 TTTAAATTATTTATA
26481170 GTTTTACTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (15 bp):
TTTAAATTATTTATA
Found at i:26500341 original size:52 final size:52
Alignment explanation
Indices: 26500263--26500365 Score: 188
Period size: 52 Copynumber: 2.0 Consensus size: 52
26500253 AATACGCAAC
26500263 CCAACCCAAGTAGGGATGCGTCACTATAAATGACAAACTCTTTACCTGATTT
1 CCAACCCAAGTAGGGATGCGTCACTATAAATGACAAACTCTTTACCTGATTT
* *
26500315 CCAACCCGAGTAGGGATGCGTCACTATAAATGACAAACTCTTTGCCTGATT
1 CCAACCCAAGTAGGGATGCGTCACTATAAATGACAAACTCTTTACCTGATT
26500366 CGGGTTGCAC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (52 bp):
CCAACCCAAGTAGGGATGCGTCACTATAAATGACAAACTCTTTACCTGATTT
Found at i:26501799 original size:235 final size:235
Alignment explanation
Indices: 26501382--26501843 Score: 775
Period size: 235 Copynumber: 2.0 Consensus size: 235
26501372 GTCATCAAGC
* *
26501382 ACATATGCAAGGTATGCTTCGCACCCTTTTCTTACATATTTCTGTGCCAACATTGCTGATATTAC
1 ACATACGCAAGGTATGCTTCGCACCCTTTTCTTACATATTTCTGGGCCAACATTGCTGATATTAC
* *
26501447 AGCTGGCATCCCCTCCAAGTCCGCAGACTCAATTCGGACTACTTCGTTATTTGCGCACCTCAAAT
66 AGCTGGCACCCCCTCCAAGTCCGCAGACTCAACTCGGACTACTTCGTTATTTGCGCACCTCAAAT
* * *
26501512 CAATAGTCTTGCTCTTGCAATTCACAATCGCATCATGCGCGGTCAACCAATCCAACCCAAGGATA
131 CAATAGTCTTGCTCTTGCAATTCACAACCGCATCATGCGCGGTCAACCAATCCAAACCAAGAATA
26501577 ACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGCTT
196 ACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGCTT
26501617 ACATACGCAAGGTATGCTTCGCACCCTTTTCTTACATATTTCTGGGCCAACATTGCTGATATTAC
1 ACATACGCAAGGTATGCTTCGCACCCTTTTCTTACATATTTCTGGGCCAACATTGCTGATATTAC
* * * *
26501682 AGCTGGCAACCCCCT-TAAGTCTGTAGACTCAACTCGGATTA-TCTCGTTATTTGCGCACCTCAA
66 AGCTGGC-ACCCCCTCCAAGTCCGCAGACTCAACTCGGACTACT-TCGTTATTTGCGCACCTCAA
*
26501745 ATCAATAGTCTTGCTTTTGCAATTCACAACCGCATCATGCGCGGTCAACCAATCCAAACCAAGAA
129 ATCAATAGTCTTGCTCTTGCAATTCACAACCGCATCATGCGCGGTCAACCAATCCAAACCAAGAA
*
26501810 TAACATCAAATTCGTCAAACGGCAAAAGCATCAA
194 TAACATCAAATTCATCAAACGGCAAAAGCATCAA
26501844 ATCGGCCGGA
Statistics
Matches: 212, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
234 1 0.00
235 205 0.97
236 6 0.03
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (235 bp):
ACATACGCAAGGTATGCTTCGCACCCTTTTCTTACATATTTCTGGGCCAACATTGCTGATATTAC
AGCTGGCACCCCCTCCAAGTCCGCAGACTCAACTCGGACTACTTCGTTATTTGCGCACCTCAAAT
CAATAGTCTTGCTCTTGCAATTCACAACCGCATCATGCGCGGTCAACCAATCCAAACCAAGAATA
ACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGCTT
Found at i:26503983 original size:52 final size:52
Alignment explanation
Indices: 26503921--26504025 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
26503911 AATGAATTTA
26503921 CAAAGTCGGAACAGGGAACCCAGAAACCGTTCTGGCCCTGTCTCACGAGAAC
1 CAAAGTCGGAACAGGGAACCCAGAAACCGTTCTGGCCCTGTCTCACGAGAAC
26503973 CAAAGTCGGAACAGGGAACCCAGAAACCGTTCTGGCCCTGTCTCACGAGAAC
1 CAAAGTCGGAACAGGGAACCCAGAAACCGTTCTGGCCCTGTCTCACGAGAAC
26504025 C
1 C
26504026 TGAATATCTC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.30, C:0.31, G:0.25, T:0.13
Consensus pattern (52 bp):
CAAAGTCGGAACAGGGAACCCAGAAACCGTTCTGGCCCTGTCTCACGAGAAC
Found at i:26505154 original size:28 final size:28
Alignment explanation
Indices: 26505091--26505213 Score: 158
Period size: 28 Copynumber: 4.4 Consensus size: 28
26505081 ATATTAAGTC
* *
26505091 CGCATACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
26505118 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
26505146 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
26505174 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
26505203 CGCACACTTAG
1 CGCACACTTAG
26505214 CGCCAATCTC
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 20 0.24
28 48 0.57
29 16 0.19
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26510754 original size:22 final size:22
Alignment explanation
Indices: 26510729--26510770 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
26510719 ATTCTGCTCT
* *
26510729 CTATGTTGCGACATTGCATCTC
1 CTATGTTACGACATAGCATCTC
26510751 CTATGTTACGACATAGCATC
1 CTATGTTACGACATAGCATC
26510771 CAATATTGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (22 bp):
CTATGTTACGACATAGCATCTC
Found at i:26511802 original size:50 final size:50
Alignment explanation
Indices: 26511747--26511846 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
26511737 AGTCCTTTTC
26511747 TTTTCTTAAATCAAGACAATCTTGAACATCAATACATAGATACATATATA
1 TTTTCTTAAATCAAGACAATCTTGAACATCAATACATAGATACATATATA
26511797 TTTTCTTAAATCAAGACAATCTTGAACATCAATACATAGATACATATATA
1 TTTTCTTAAATCAAGACAATCTTGAACATCAATACATAGATACATATATA
26511847 AATTATCAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.44, C:0.16, G:0.06, T:0.34
Consensus pattern (50 bp):
TTTTCTTAAATCAAGACAATCTTGAACATCAATACATAGATACATATATA
Found at i:26511880 original size:20 final size:20
Alignment explanation
Indices: 26511843--26511880 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26511833 TAGATACATA
*
26511843 TATAAATTATCAATTAATCT
1 TATAAATTATAAATTAATCT
26511863 TATAAATT-TAAATATAAT
1 TATAAATTATAAAT-TAAT
26511881 ATTTTAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (20 bp):
TATAAATTATAAATTAATCT
Found at i:26516376 original size:28 final size:28
Alignment explanation
Indices: 26516344--26516399 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
26516334 CCACCAACTC
26516344 TTCTCTTCAATTTTTCTTTACTTTCCCT
1 TTCTCTTCAATTTTTCTTTACTTTCCCT
*
26516372 TTCTCTTCAATTTTTTTTTACTTTCCCT
1 TTCTCTTCAATTTTTCTTTACTTTCCCT
26516400 CCTCTTTCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.11, C:0.27, G:0.00, T:0.62
Consensus pattern (28 bp):
TTCTCTTCAATTTTTCTTTACTTTCCCT
Done.