Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 93 of 205
Found at i:27149379 original size:50 final size:50
Alignment explanation
Indices: 27149307--27149583 Score: 184
Period size: 50 Copynumber: 5.5 Consensus size: 50
27149297 AAGGAAAATA
* *
27149307 AGATTCGCCATCGTGGCCTCAATCTTTTAGTTTGCAATGTCGGGGAAGTG
1 AGATTCGCCATCGTAGCCTCAATCTTTTAGTTTGCAATGTCAGGGAAGTG
* * * * * * * * * * * *
27149357 AGATTCGCCGTCATAGCTTCAATCTATTCCACTATACCA--CCAAGGAAAATA
1 AGATTCGCCATCGTAGCCTCAATCT-TT-TAGTTTGCAATGTC-AGGGAAGTG
* *
27149408 AGATTCGCCATCGTGGCCTCAATCTTTTAGTTTGCAATGTCGGGGAAGTG
1 AGATTCGCCATCGTAGCCTCAATCTTTTAGTTTGCAATGTCAGGGAAGTG
* * * * * * * * * * * *
27149458 AGATTCGCCGTCATAGCTTCAATCTATTCCACTATACCA--CCAAGGAAAATA
1 AGATTCGCCATCGTAGCCTCAATCT-TT-TAGTTTGCAATGTC-AGGGAAGTG
*
27149509 AGATTCGCCATCGTGGCCTCAATCTTTTAGTTTGCAATGTCAGGGAAGTG
1 AGATTCGCCATCGTAGCCTCAATCTTTTAGTTTGCAATGTCAGGGAAGTG
* * *
27149559 AGATTCACCGTCGTAGCTTCAATCT
1 AGATTCGCCATCGTAGCCTCAATCT
27149584 GTTCCACTGC
Statistics
Matches: 158, Mismatches: 59, Indels: 20
0.67 0.25 0.08
Matches are distributed among these distances:
49 10 0.06
50 80 0.51
51 58 0.37
52 10 0.06
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (50 bp):
AGATTCGCCATCGTAGCCTCAATCTTTTAGTTTGCAATGTCAGGGAAGTG
Found at i:27149775 original size:99 final size:99
Alignment explanation
Indices: 27149305--27150573 Score: 1542
Period size: 99 Copynumber: 12.8 Consensus size: 99
27149295 CCAAGGAAAA
* * ** * *
27149305 TAAGATTCGCCATCGTGGCCTCAATCTTTTAGTTTGCAATGTCGGGGAAG-TGAGATTCGCCGTC
1 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAG-GATTCGCCGTT
* * * ** * * * *
27149369 ATAGCTTCAATCTATTCCACTATACCACCAAGGAAAA
65 GTAGCTTCAATCTGTTCCGCTGCATCGCC-TGG-AAG
* * ** * *
27149406 TAAGATTCGCCATCGTGGCCTCAATCTTTTAGTTTGCAATGTCGGGGAAG-TGAGATTCGCCGTC
1 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAG-GATTCGCCGTT
* * * ** * * * *
27149470 ATAGCTTCAATCTATTCCACTATACCACCAAGGAAAA
65 GTAGCTTCAATCTGTTCCGCTGCATCGCC-TGG-AAG
* * ** * * * *
27149507 TAAGATTCGCCATCGTGGCCTCAATCTTTTAGTTTGCAATGTCAGGGAAG-TGAGATTCACCGTC
1 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAG-GATTCGCCGTT
* * *
27149571 GTAGCTTCAATCTGTTCCACTGCACCGCCTGGGAAC
65 GTAGCTTCAATCTGTTCCGCTGCATCGCCT-GGAAG
* * * * *
27149607 TAAGATTCACCGTTGTGGCTTCGATCTTTTAATTTGCAATGTCGGGGAAGCAGG-TTCGACGTTG
1 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
* *
27149671 TAGCTTCAATCTGTTCTGCTGCATCACCTGGAAG
66 TAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
* *
27149705 TAAGATTTGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCACCGTTG
1 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
27149770 TAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
66 TAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
* * * *
27149804 TAAGATTCACCGTTGTGGCCACAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCATTG
1 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
27149869 TAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
66 TAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
* * * * *
27149903 TAAGATTTGTCGTTGTGGCCTCAATCTTTTAAATTGCAACGTTGGGGAAGCAGGATTCACCGTTG
1 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
*
27149968 TAGCTTTAATCTGTTCCGCTGCATCGCCTGGAAG
66 TAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
* *
27150002 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTACAATGTCGGGGAAGCAGGATTCACCGTTG
1 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
* * * *
27150067 TAGCTTCAATTTGTTTCACTGCAAT-GCCTGAAAG
66 TAGCTTCAATCTGTTCCGCTGC-ATCGCCTGGAAG
* * * * * *
27150101 TAAAATTCACCGTTGTGGCCTCAATATTTTAAATTGCAATATCGGCGAAGCAGGATTCACCGTTG
1 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
* * *
27150166 TAGCTTCAACCTGTTCTGCTGCATCACCTGGAAG
66 TAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
* * *
27150200 TAAGATTCACCGTTGTGGCCTTAATCTTTTAAATTGCAATGTC-GGGAAGTAGGATTCGCCGTTG
1 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
* * * *
27150264 TAGCTTCAATTTGTTCCGCTGTATAGCCTGAAAG
66 TAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
* *
27150298 TAAGATTCGTCGTTGTGGCCTCAATCTTTTAAATTGCAATATCGGGGAAGCAGGATTCGCCGTTG
1 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
* *
27150363 TAGCTTCAATCTGTTCCGCTGTATCGCCTGAAAG
66 TAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
* *
27150397 TAAGATTCGTCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCATGATTCGCCGTTG
1 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
*
27150462 TAGCTTCAATCTGTTCCGCTGCATTGCCTGGAATG
66 TAGCTTCAATCTGTTCCGCTGCATCGCCTGGAA-G
* * * * * *
27150497 TAAGATTTGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTTGCCATTG
1 TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
*
27150562 TGGCTTCAATCT
66 TAGCTTCAATCT
27150574 ATTCGACTGC
Statistics
Matches: 1054, Mismatches: 107, Indels: 15
0.90 0.09 0.01
Matches are distributed among these distances:
98 139 0.13
99 607 0.58
100 118 0.11
101 190 0.18
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (99 bp):
TAAGATTCGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCGCCGTTG
TAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
Found at i:27150595 original size:50 final size:49
Alignment explanation
Indices: 27149574--27150607 Score: 218
Period size: 50 Copynumber: 20.9 Consensus size: 49
27149564 CACCGTCGTA
* * ** **
27149574 GCTTCAATCTGTTCCACTGCACCGCCTGGGAA-CTAAGATTCACCGTTGTG
1 GCTTCAATCTATTCGACTGCAATGCC-GGGAAGC-AAGATTTGCCGTTGTG
* ** * * * * * *
27149624 GCTTCGATCT-TTTAATTTGCAATGTCGGGGAAGC-AGGTTCGACGTTGTA
1 GCTTCAATCTATTCGA-CTGCAATG-CCGGGAAGCAAGATTTGCCGTTGTG
* * * *
27149673 GCTTCAATCTGTTCTG-CTGC-ATCACCTGGAAGTAAGATTTGCCGTTGTG
1 GCTTCAATCTATTC-GACTGCAAT-GCCGGGAAGCAAGATTTGCCGTTGTG
* * ** * * * ** *
27149722 GCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAGGATTCACCGTTGTA
1 GCTTCAATCTATTCGACTGCAATG-CCGGGAAGCAAGATTTGCCGTTGTG
* * * **
27149772 GCTTCAATCTGTTCCG-CTGC-ATCGCCTGGAAGTAAGATTCACCGTTGTG
1 GCTTCAATCTATT-CGACTGCAAT-GCCGGGAAGCAAGATTTGCCGTTGTG
** * ** * * * * *
27149821 GCCACAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCATTGTA
1 GCTTCAATCTATTCGACTGCAATG-CCGGGAAGCAAGATTTGCCGTTGTG
* * * *
27149871 GCTTCAATCTGTTCCG-CTGC-ATCGCCTGGAAGTAAGATTTGTCGTTGTG
1 GCTTCAATCTATT-CGACTGCAAT-GCCGGGAAGCAAGATTTGCCGTTGTG
* * ** * * ** * ** *
27149920 GCCTCAATCTTTTAAATTGCAACGTTGGGGAAGCAGGATTCACCGTTGTA
1 GCTTCAATCTATTCGACTGCAATG-CCGGGAAGCAAGATTTGCCGTTGTG
* * * * *
27149970 GCTTTAATCTGTTCCG-CTGC-ATCGCCTGGAAGTAAGATTCGCCGTTGTG
1 GCTTCAATCTATT-CGACTGCAAT-GCCGGGAAGCAAGATTTGCCGTTGTG
* * ** * * * * ** *
27150019 GCCTCAATCTTTTAAATTACAATGTCGGGGAAGCAGGATTCACCGTTGTA
1 GCTTCAATCTATTCGACTGCAATG-CCGGGAAGCAAGATTTGCCGTTGTG
* * * * * * **
27150069 GCTTCAATTTGTTTC-ACTGCAATGCCTGAAAGTAAAATTCACCGTTGTG
1 GCTTCAATCT-ATTCGACTGCAATGCCGGGAAGCAAGATTTGCCGTTGTG
* * * ** * ** * ** *
27150118 GCCTCAATATTTTAAATTGCAATATCGGCGAAGCAGGATTCACCGTTGTA
1 GCTTCAATCTATTCGACTGCAATGCCGG-GAAGCAAGATTTGCCGTTGTG
* * * * * **
27150168 GCTTCAACCTGTTCTG-CTGC-ATCACCTGGAAGTAAGATTCACCGTTGTG
1 GCTTCAATCTATTC-GACTGCAAT-GCCGGGAAGCAAGATTTGCCGTTGTG
* ** * * * * * *
27150217 GCCTT-AATCTTTTAAATTGCAATGTCGGGAAGTAGGATTCGCCGTTGTA
1 G-CTTCAATCTATTCGACTGCAATGCCGGGAAGCAAGATTTGCCGTTGTG
* * * * * * * *
27150266 GCTTCAATTTGTTCCG-CTG-TATAGCCTGAAAGTAAGATTCGTCGTTGTG
1 GCTTCAATCTATT-CGACTGCAAT-GCCGGGAAGCAAGATTTGCCGTTGTG
* * ** * * * * * *
27150315 GCCTCAATCTTTTAAATTGCAATATCGGGGAAGCAGGATTCGCCGTTGTA
1 GCTTCAATCTATTCGACTGCAAT-GCCGGGAAGCAAGATTTGCCGTTGTG
* * * * * * *
27150365 GCTTCAATCTGTTCCG-CTG-TATCGCCTGAAAGTAAGATTCGTCGTTGTG
1 GCTTCAATCTATT-CGACTGCAAT-GCCGGGAAGCAAGATTTGCCGTTGTG
* * ** * * * * *
27150414 GCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCATGATTCGCCGTTGTA
1 GCTTCAATCTATTCGACTGCAATG-CCGGGAAGCAAGATTTGCCGTTGTG
* * * *
27150464 GCTTCAATCTGTTCCG-CTGCATTGCCTGGAATGTAAGATTTGCCGTTGTG
1 GCTTCAATCTATT-CGACTGCAATGCCGGGAA-GCAAGATTTGCCGTTGTG
* ** * * *
27150514 GCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTTGCCATTGTG
1 GCTTCAATCTATTCGACTGCAATG-CCGGGAAGCAAGATTTGCCGTTGTG
* *
27150564 GCTTCAATCTATTCGACTGCACTGCCAGGGAAAGTAAGATTTGC
1 GCTTCAATCTATTCGACTGCAATGCC-GGG-AAGCAAGATTTGC
27150608 TGTCTTTGAT
Statistics
Matches: 693, Mismatches: 243, Indels: 95
0.67 0.24 0.09
Matches are distributed among these distances:
48 16 0.02
49 320 0.46
50 335 0.48
51 22 0.03
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (49 bp):
GCTTCAATCTATTCGACTGCAATGCCGGGAAGCAAGATTTGCCGTTGTG
Found at i:27150755 original size:88 final size:88
Alignment explanation
Indices: 27150603--27151185 Score: 888
Period size: 88 Copynumber: 6.6 Consensus size: 88
27150593 GAAAGTAAGA
* *
27150603 TTTGCTGTCTTTGATCTGC-TCTGCTGTCAA--CAGGAAGGCAAGATCTGTTGTCTTCAACTAGC
1 TTTG-TGTCTTCGATCTGCTTC-GCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGC
* *
27150665 TCCACTATAACCGAGAGAGGTAAGG
64 TCCACTACAACCGAGAGAGGCAAGG
* *
27150690 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATTTGTTGTCTTCAACTAGCTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
27150755 CACTACAACCGAGAGAGGCAAGG
66 CACTACAACCGAGAGAGGCAAGG
* *
27150778 TTTGTGTCTTCGATCTGCTTCACTGTCAAGGCAGTAAGGCAAGATCTGTTGTCTTCAACCAGCTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
27150843 CACTACAACCGAGAGAGGCAAGG
66 CACTACAACCGAGAGAGGCAAGG
* *
27150866 TTTGTGTCTTCGATCTGCTTCGCTGT-AAGGTAGGAAGGCAAGATCTGTTGTTTTCAACCAGCTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
*
27150930 CACTACAACCGAGAGAGGCCAGG
66 CACTACAACCGAGAGAGGCAAGG
*
27150953 TTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
*
27151018 CACTACAACCGAAAGAGGCAAGG
66 CACTACAACCGAGAGAGGCAAGG
* * * * *
27151041 TTTGTGTCTTCGATCTACTTCGCTGTCAATGTAAGAAGGCAAGATTTGTTGTCTTCAACCAGCTC
1 TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
*
27151106 CACTACAACTGAGAGAGGCAAGG
66 CACTACAACCGAGAGAGGCAAGG
* * * * *
27151129 TTTGTG-CATTCGATCTTCTTTGCTGTCAAGGCAGGAAAGCAAGATTTGATGTCTTCA
1 TTTGTGTC-TTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCA
27151186 TTGATCTGTT
Statistics
Matches: 460, Mismatches: 31, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
86 21 0.05
87 90 0.20
88 349 0.76
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (88 bp):
TTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTC
CACTACAACCGAGAGAGGCAAGG
Found at i:27151101 original size:263 final size:264
Alignment explanation
Indices: 27150615--27151185 Score: 884
Period size: 263 Copynumber: 2.2 Consensus size: 264
27150605 TGCTGTCTTT
* *
27150615 GATCTGC-TCTGCTGTCAA--CAGGAAGGCAAGATCTGTTGTCTTCAACTAGCTCCACTATAACC
1 GATCTGCTTC-GCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACC
* *
27150677 GAGAGAGGTAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATTTGTTGT
65 GAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGT
* * *
27150742 CTTCAACTAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCACTGTCAA
130 CTTCAACCAGCTCCACTACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTACTTCACTGTCAA
*
27150807 GGCAGTAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTG
195 GGAAGTAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTG
27150872 TC-TTC
260 -CATTC
* *
27150877 GATCTGCTTCGCTGT-AAGGTAGGAAGGCAAGATCTGTTGTTTTCAACCAGCTCCACTACAACCG
1 GATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCG
* *
27150941 AGAGAGGCCAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTC
66 AGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTC
*
27151006 TTCAACCAGCTCCACTACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTACTTCGCTGTCAAT
131 TTCAACCAGCTCCACTACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTACTTCACTGTCAA-
* * *
27151071 GTAAG-AAGGCAAGATTTGTTGTCTTCAACCAGCTCCACTACAACTGAGAGAGGCAAGGTTTGTG
195 GGAAGTAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTG
27151135 CATTC
260 CATTC
* * * * *
27151140 GATCTTCTTTGCTGTCAAGGCAGGAAAGCAAGATTTGATGTCTTCA
1 GATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCA
27151186 TTGATCTGTT
Statistics
Matches: 280, Mismatches: 23, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
261 2 0.01
262 13 0.05
263 237 0.85
264 28 0.10
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (264 bp):
GATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCG
AGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTGTTGTC
TTCAACCAGCTCCACTACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTACTTCACTGTCAAG
GAAGTAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTGC
ATTC
Found at i:27152333 original size:42 final size:42
Alignment explanation
Indices: 27152262--27152381 Score: 150
Period size: 42 Copynumber: 2.8 Consensus size: 42
27152252 GGTATAGTAA
* * * *
27152262 GATCACCACATGCCCCAGTTTGATCAAAATTTGAGCTGCTCT
1 GATCACCTCATACCCCAATCTGATCAAAATTTGAGCTGCTCT
*
27152304 GATTACCTCATACCCCAATCTGATCAAAATTTGAGCTGCTCT
1 GATCACCTCATACCCCAATCTGATCAAAATTTGAGCTGCTCT
* * * *
27152346 GGTCGCCTCATGCCCCAATTTGATCCAAAATTTGAG
1 GATCACCTCATACCCCAATCTGAT-CAAAATTTGAG
27152382 TCGCCCTTTT
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 56 0.84
43 11 0.16
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (42 bp):
GATCACCTCATACCCCAATCTGATCAAAATTTGAGCTGCTCT
Found at i:27152484 original size:15 final size:14
Alignment explanation
Indices: 27152457--27152493 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
27152447 TTAGCCTCTC
*
27152457 CATTTTTACTTTTT
1 CATTTTTTCTTTTT
27152471 CATTTTTTCATTTTT
1 CATTTTTTC-TTTTT
27152486 CATTTTTT
1 CATTTTTT
27152494 TTCATTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.73
Consensus pattern (14 bp):
CATTTTTTCTTTTT
Found at i:27154131 original size:17 final size:18
Alignment explanation
Indices: 27154099--27154135 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
27154089 TCGGCACAGT
27154099 ATGATTATGAATGAAAGA
1 ATGATTATGAATGAAAGA
*
27154117 ATGATT-TGGATGAAAGA
1 ATGATTATGAATGAAAGA
27154134 AT
1 AT
27154136 AAAAGAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.30
Consensus pattern (18 bp):
ATGATTATGAATGAAAGA
Found at i:27156012 original size:27 final size:27
Alignment explanation
Indices: 27155974--27156025 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
27155964 ATGCAAAATT
*
27155974 AATTTGGAAGAAAATCTAAAAGAATAA
1 AATTTGGAAGAAAATCGAAAAGAATAA
27156001 AATTTGGAAGAAAATCGAAAAGAAT
1 AATTTGGAAGAAAATCGAAAAGAAT
27156026 CAAAGAATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.58, C:0.04, G:0.17, T:0.21
Consensus pattern (27 bp):
AATTTGGAAGAAAATCGAAAAGAATAA
Found at i:27158664 original size:23 final size:24
Alignment explanation
Indices: 27158638--27158685 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
27158628 AAAATAATGA
* *
27158638 AAACGTGAATAAA-TAATCAAAAT
1 AAACGTGAACAAAGTAATAAAAAT
27158661 AAACGTGAACAAAGTAATAAAAAT
1 AAACGTGAACAAAGTAATAAAAAT
27158685 A
1 A
27158686 TAAAAACATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.62, C:0.08, G:0.10, T:0.19
Consensus pattern (24 bp):
AAACGTGAACAAAGTAATAAAAAT
Found at i:27158830 original size:10 final size:10
Alignment explanation
Indices: 27158815--27158844 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
27158805 TAAAAATGCG
27158815 TATAGATGTA
1 TATAGATGTA
27158825 TATAGATGTA
1 TATAGATGTA
27158835 TATAGATGTA
1 TATAGATGTA
27158845 GTCACATGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (10 bp):
TATAGATGTA
Found at i:27163243 original size:24 final size:22
Alignment explanation
Indices: 27163202--27163280 Score: 78
Period size: 21 Copynumber: 3.7 Consensus size: 22
27163192 ATTCTTCAAG
27163202 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
*
27163221 GATATGCAATCTTAG-ATATGAT
1 GATATGCAATCTTAGAAGAT-AT
27163243 -ATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
27163264 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
27163281 GATTTAATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
19 13 0.26
21 19 0.38
22 6 0.12
23 12 0.24
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:27163248 original size:21 final size:19
Alignment explanation
Indices: 27163202--27163257 Score: 94
Period size: 19 Copynumber: 2.8 Consensus size: 19
27163192 ATTCTTCAAG
27163202 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
27163221 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
27163240 GATATATGCAATCTTAGA
1 G--ATATGCAATCTTAGA
27163258 AGATATGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 20 0.57
21 15 0.43
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:27163279 original size:23 final size:24
Alignment explanation
Indices: 27163203--27163280 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 24
27163193 TTCTTCAAGG
27163203 ATATGCAATCTT---AGATATG--
1 ATATGCAATCTTAGAAGATATGAT
27163222 ATATGCAATCTTAG---ATATGAT
1 ATATGCAATCTTAGAAGATATGAT
27163243 ATATGCAATCTTAGAAGATATGAT
1 ATATGCAATCTTAGAAGATATGAT
* *
27163267 -TTTGTAATCTTAGA
1 ATATGCAATCTTAGA
27163281 GATTTAATTT
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
19 17 0.34
21 14 0.28
23 12 0.24
24 7 0.14
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.38
Consensus pattern (24 bp):
ATATGCAATCTTAGAAGATATGAT
Found at i:27163862 original size:42 final size:39
Alignment explanation
Indices: 27163816--27163905 Score: 92
Period size: 40 Copynumber: 2.2 Consensus size: 39
27163806 ATACGTACAC
*
27163816 ATTTTTTAATTTTT-ATAAATATATATATACACATACTTTTAT
1 ATTTTTTAATTTTTCAT-AAT-TATATAT--ACATACTTATAT
* *
27163858 ATTTTTTCTATTTTTCATAATTCTATATACATACTTATAT
1 ATTTTTT-AATTTTTCATAATTATATATACATACTTATAT
*
27163898 ATATTTTA
1 ATTTTTTA
27163906 CATATTAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
40 17 0.41
42 13 0.32
43 9 0.22
44 2 0.05
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (39 bp):
ATTTTTTAATTTTTCATAATTATATATACATACTTATAT
Found at i:27163996 original size:23 final size:22
Alignment explanation
Indices: 27163967--27164010 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
27163957 ATAATTCACA
*
27163967 TACATATATATTTTTCTTATATG
1 TACATATATATATTT-TTATATG
27163990 TACATATATATATTTTTATAT
1 TACATATATATATTTTTATAT
27164011 TTTATAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57
Consensus pattern (22 bp):
TACATATATATATTTTTATATG
Found at i:27166740 original size:37 final size:37
Alignment explanation
Indices: 27166690--27166768 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27166680 TTATTACGAA
* * *
27166690 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
27166727 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
27166764 GTCTT
1 GTCTT
27166769 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:27166965 original size:47 final size:47
Alignment explanation
Indices: 27166887--27167297 Score: 750
Period size: 47 Copynumber: 8.7 Consensus size: 47
27166877 CCCTTCGGGA
* * * * * *
27166887 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27166934 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27166981 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27167028 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27167075 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27167122 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27167169 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27167216 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27167263 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
27167298 AGAATCCTAA
Statistics
Matches: 354, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 354 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:27168459 original size:18 final size:18
Alignment explanation
Indices: 27168436--27168477 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
27168426 CATATGCATT
27168436 TTTAATCACATCAAGCAA
1 TTTAATCACATCAAGCAA
27168454 TTTAATCACATCAAGCAA
1 TTTAATCACATCAAGCAA
27168472 TTTAAT
1 TTTAAT
27168478 ACAATTCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.43, C:0.19, G:0.05, T:0.33
Consensus pattern (18 bp):
TTTAATCACATCAAGCAA
Found at i:27181079 original size:17 final size:18
Alignment explanation
Indices: 27181059--27181098 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
27181049 AATATTTCAA
*
27181059 AAAAAACCAAAAG-AAAG
1 AAAAAACAAAAAGAAAAG
*
27181076 AAAAAAGAAAAAGAAAAG
1 AAAAAACAAAAAGAAAAG
27181094 AAAAA
1 AAAAA
27181099 GGAGAGGCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.82, C:0.05, G:0.12, T:0.00
Consensus pattern (18 bp):
AAAAAACAAAAAGAAAAG
Found at i:27181083 original size:11 final size:11
Alignment explanation
Indices: 27181067--27181099 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
27181057 AAAAAAAACC
27181067 AAAAGAAAGAA-
1 AAAAGAAA-AAG
27181078 AAAAGAAAAAG
1 AAAAGAAAAAG
27181089 AAAAGAAAAAG
1 AAAAGAAAAAG
27181100 GAGAGGCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 2 0.10
11 19 0.90
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:27182236 original size:44 final size:44
Alignment explanation
Indices: 27182186--27182321 Score: 112
Period size: 44 Copynumber: 3.1 Consensus size: 44
27182176 AAATAGCAGA
*
27182186 TCTTGTCTTCTTGTATTGGCAGTGAAGTAGATCGAAGATACCAG
1 TCTTGTCTTCTTGTAATGGCAGTGAAGTAGATCGAAGATACCAG
* ** * * * **
27182230 TCTTGTCTCCTTG-AACAGCAGTGGAGTAGGTTGAAGATGGCAG
1 TCTTGTCTTCTTGTAATGGCAGTGAAGTAGATCGAAGATACCAG
* * * ** * *
27182273 ATCTTGCCTTCCTGTACTGGCAGCAAAGCAGATCGAAGACACCAG
1 -TCTTGTCTTCTTGTAATGGCAGTGAAGTAGATCGAAGATACCAG
27182318 TCTT
1 TCTT
27182322 ATCGCCTTAA
Statistics
Matches: 66, Mismatches: 24, Indels: 4
0.70 0.26 0.04
Matches are distributed among these distances:
43 22 0.33
44 26 0.39
45 18 0.27
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.29
Consensus pattern (44 bp):
TCTTGTCTTCTTGTAATGGCAGTGAAGTAGATCGAAGATACCAG
Found at i:27182306 original size:88 final size:88
Alignment explanation
Indices: 27182161--27182321 Score: 241
Period size: 88 Copynumber: 1.8 Consensus size: 88
27182151 CTTGAGAAAT
* * * ** * *
27182161 AGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCTTGTATTGGCAGTGAAGTAGATCGAAGATA
1 AGTGGAGTAGGTTGAAAATAGCAGATCTTGCCTTCCTGTACTGGCAGCAAAGCAGATCGAAGACA
27182226 CCAGTCTTGTCTCCTTGAACAGC
66 CCAGTCTTGTCTCCTTGAACAGC
* *
27182249 AGTGGAGTAGGTTGAAGATGGCAGATCTTGCCTTCCTGTACTGGCAGCAAAGCAGATCGAAGACA
1 AGTGGAGTAGGTTGAAAATAGCAGATCTTGCCTTCCTGTACTGGCAGCAAAGCAGATCGAAGACA
27182314 CCAGTCTT
66 CCAGTCTT
27182322 ATCGCCTTAA
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 64 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (88 bp):
AGTGGAGTAGGTTGAAAATAGCAGATCTTGCCTTCCTGTACTGGCAGCAAAGCAGATCGAAGACA
CCAGTCTTGTCTCCTTGAACAGC
Found at i:27182553 original size:50 final size:49
Alignment explanation
Indices: 27182498--27182865 Score: 223
Period size: 50 Copynumber: 7.4 Consensus size: 49
27182488 TTGGGATTAT
*
27182498 AGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTCCCATGGCAGTGT
1 AGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTCCC-TGGCAGTGC
* * ** * * *
27182548 AGTGGAATAGATTGAAGCCACAACAGCGGATCTTGTTTCCCCGACATTGC
1 AGTGGAATAGATTGAAGCCACAACGGCGAATCTT-ACTCCCTGGCAGTGC
* ** * * * * * *
27182598 AATTAAAAAGATTGAAGCCACAATGGAGAATATTACTTCCTTAGCAGTGC
1 AGTGGAATAGATTGAAGCCACAACGGCGAATCTTAC-TCCCTGGCAGTGC
* * * * * * *
27182648 AGTGGAACAGATTGAAGCCACGACGGTGGATCTTATTTCCCTGACATTGC
1 AGTGGAATAGATTGAAGCCACAACGGCGAATCTTA-CTCCCTGGCAGTGC
* ** * * * * *
27182698 AATTAAAAAGATTGAAGCCACAACGGCGAATTTTACTTCCATAGCGGTGC
1 AGTGGAATAGATTGAAGCCACAACGGCGAATCTTAC-TCCCTGGCAGTGC
* * * ** * * *
27182748 AGTGGAATAGATTGAAGCCACGACGGTGGATCTTGTTTCCCCGACATTGC
1 AGTGGAATAGATTGAAGCCACAACGGCGAATCTT-ACTCCCTGGCAGTGC
* ** * * * * * *
27182798 AATAAAAAATATTGAAGCCACAACGGTGAATCTTACTTCCTTAGCGGTGC
1 AGTGGAATAGATTGAAGCCACAACGGCGAATCTTAC-TCCCTGGCAGTGC
*
27182848 AGTGGAACAGATTGAAGC
1 AGTGGAATAGATTGAAGC
27182866 TATTACGGGA
Statistics
Matches: 224, Mismatches: 88, Indels: 12
0.69 0.27 0.04
Matches are distributed among these distances:
50 220 0.98
51 4 0.02
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24
Consensus pattern (49 bp):
AGTGGAATAGATTGAAGCCACAACGGCGAATCTTACTCCCTGGCAGTGC
Found at i:27182634 original size:100 final size:101
Alignment explanation
Indices: 27182506--27183312 Score: 963
Period size: 100 Copynumber: 8.1 Consensus size: 101
27182496 ATAGTGGAAT
* * * * * * * * *
27182506 AGATTGAAGCCACAACGGCGAATCTTACTCCCATGGCAGTGTAGTGGAATAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGAGAATCTTACTTCCTTAGCGGTGCAGTGGAACAGATTGAAGCTACGA
* * *
27182571 CAGCGGATCTTG-TTTCCCCGACATTGCAATTAAAA
66 CGGTGAATCTTGATTTCCCCGACATTGCAATTAAAA
* * * *
27182606 AGATTGAAGCCACAATGGAGAATATTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCCACGA
1 AGATTGAAGCCACAACGGAGAATCTTACTTCCTTAGCGGTGCAGTGGAACAGATTGAAGCTACGA
* *
27182671 CGGTGGATCTT-ATTTCCCTGACATTGCAATTAAAA
66 CGGTGAATCTTGATTTCCCCGACATTGCAATTAAAA
* * * * *
27182706 AGATTGAAGCCACAACGGCGAATTTTACTTCCATAGCGGTGCAGTGGAATAGATTGAAGCCACGA
1 AGATTGAAGCCACAACGGAGAATCTTACTTCCTTAGCGGTGCAGTGGAACAGATTGAAGCTACGA
* *
27182771 CGGTGGATCTTG-TTTCCCCGACATTGCAATAAAAA
66 CGGTGAATCTTGATTTCCCCGACATTGCAATTAAAA
* * **
27182806 ATATTGAAGCCACAACGGTGAATCTTACTTCCTTAGCGGTGCAGTGGAACAGATTGAAGCTATTA
1 AGATTGAAGCCACAACGGAGAATCTTACTTCCTTAGCGGTGCAGTGGAACAGATTGAAGCTACGA
** *
27182871 CGG-GAAT-TTGATTTCCTAGATATTGCAATTAAAA
66 CGGTGAATCTTGATTTCCCCGACATTGCAATTAAAA
* *
27182905 AGATTGAAGCCACAAC-GATGAATCTTACTTTCTTAGTGGTAG-AGTGGAACAGATTGAAGCTAC
1 AGATTGAAGCCACAACGGA-GAATCTTACTTCCTTAGCGGT-GCAGTGGAACAGATTGAAGCTAC
*
27182968 GACGGTGAATC-TGATTTCCCCGACATTGTAATTAAAA
64 GACGGTGAATCTTGATTTCCCCGACATTGCAATTAAAA
* * * * *
27183005 AGATTGAAGCCACAA-TGATGAATCTTACTTTCTTAGTGGTGCAGTGAAACATATTGAAGCTACG
1 AGATTGAAGCCACAACGGA-GAATCTTACTTCCTTAGCGGTGCAGTGGAACAGATTGAAGCTACG
*
27183069 ACGGTGAAT-TTGATTTCCCCGATATTGCAATTAAAA
65 ACGGTGAATCTTGATTTCCCCGACATTGCAATTAAAA
* * * * * * *
27183105 AGACTGAAGCCACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGGAACAGATTGAAGCTGCGA
1 AGATTGAAGCCACAACGGAGAATCTTACTTCCTTAGCGGTGCAGTGGAACAGATTGAAGCTACGA
* * *
27183170 CGGCGAATC-TGATTTCCCTGACATTGTAATTAAAA
66 CGGTGAATCTTGATTTCCCCGACATTGCAATTAAAA
* * * * *
27183205 AGATTGAAGCCACAACGGTGAATCTTATTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
1 AGATTGAAGCCACAACGGAGAATCTTACTTCCTTAGCGGTGCAGTGGAACAGATTGAAGCTACGA
* * * *
27183270 CGGCGAATCTTG-TTTCCCCGACATTACAGTTAAAC
66 CGGTGAATCTTGATTTCCCCGACATTGCAATTAAAA
27183305 AGATTGAA
1 AGATTGAA
27183313 AACAACGAAT
Statistics
Matches: 623, Mismatches: 71, Indels: 26
0.87 0.10 0.04
Matches are distributed among these distances:
98 4 0.01
99 81 0.13
100 535 0.86
101 3 0.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (101 bp):
AGATTGAAGCCACAACGGAGAATCTTACTTCCTTAGCGGTGCAGTGGAACAGATTGAAGCTACGA
CGGTGAATCTTGATTTCCCCGACATTGCAATTAAAA
Found at i:27183009 original size:50 final size:50
Alignment explanation
Indices: 27182952--27183312 Score: 231
Period size: 50 Copynumber: 7.2 Consensus size: 50
27182942 GGTAGAGTGG
*
27182952 AACAGATTGAAGCTACGACGGTGAATCTGATTTCCCCGACATTGTAATTA
1 AACAGATTGAAGCTACGACGGTGAATCTGATTTCCCCGACATTGTAGTTA
* * * * * * *** *** * *
27183002 AAAAGATTGAAGCCACAATGATGAATCTTACTTTCTTAG-TGGTGCAGTGA
1 AACAGATTGAAGCTACGACGGTGAATCTGA-TTTCCCCGACATTGTAGTTA
* * * * *
27183052 AACATATTGAAGCTACGACGGTGAATTTGATTTCCCCGATATTGCAATTA
1 AACAGATTGAAGCTACGACGGTGAATCTGATTTCCCCGACATTGTAGTTA
* * * * * * * * **** **
27183102 AAAAGACTGAAGCCACAACGGCGAATCTTACTTCCCTGGTGGTGTAGTGG
1 AACAGATTGAAGCTACGACGGTGAATCTGATTTCCCCGACATTGTAGTTA
* * * *
27183152 AACAGATTGAAGCTGCGACGGCGAATCTGATTTCCCTGACATTGTAATTA
1 AACAGATTGAAGCTACGACGGTGAATCTGATTTCCCCGACATTGTAGTTA
* * * * * * ** **
27183202 AAAAGATTGAAGCCACAACGGTGAATCTTATTTCCCTGGCGGTGTAGTGG
1 AACAGATTGAAGCTACGACGGTGAATCTGATTTCCCCGACATTGTAGTTA
* **
27183252 AACAGATTGAAGCTACGACGGCGAATCTTG-TTTCCCCGACATTACAGTTA
1 AACAGATTGAAGCTACGACGGTGAATC-TGATTTCCCCGACATTGTAGTTA
27183302 AACAGATTGAA
1 AACAGATTGAA
27183313 AACAACGAAT
Statistics
Matches: 222, Mismatches: 86, Indels: 6
0.71 0.27 0.02
Matches are distributed among these distances:
49 5 0.02
50 211 0.95
51 6 0.03
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (50 bp):
AACAGATTGAAGCTACGACGGTGAATCTGATTTCCCCGACATTGTAGTTA
Found at i:27183618 original size:44 final size:44
Alignment explanation
Indices: 27183321--27184086 Score: 183
Period size: 44 Copynumber: 17.5 Consensus size: 44
27183311 AAAACAACGA
* * * **
27183321 ATCTTATCTCCCTGAAGATGCAGCGGACCAGATTAAAGCCAATA-
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAA-ATAATAG
* * **
27183365 ATCCTATCTCCCTAAAGTTGCAGTGGAGTAGATTAAAATAATAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAATAATAG
* * * * ** ***
27183409 ATATTATCTCTCTGAAGTTGTAGTAGAGTAGA-TCGCAT--TAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAATAATAG
* * * ** * * *
27183450 GTCTTATCTCCCTGAGGTTGCAGCGGAGTAGACT-GAGTAAGTAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAATAA-TAG
* * ** * * ****
27183494 GTCTTATC-CTCCTGAGGTTGCAGTGGGGCAGGCTGAAAATGGCGG
1 ATCTTATCTC-CCTGAAGTTGCAGTGGAACA-GATTAAAATAATAG
* * *
27183539 ATCTTATCTCTCTGAGGTTGCAGTGGAACAGATTAAAGCTAATA-
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAA-ATAATAG
* * *
27183583 AT-TCTATTTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAATAG
1 ATCT-TATCTCCCTGAAGTTGCAGTGGAACAGATTAAAATAATAG
* * * * ***
27183627 ATCTTATCTCTCTGAAGTTGCAGTAGAATATA-TCGCAT--TAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAATAATAG
* * * * * *
27183668 GTCTTCTCTCCCTGAGGTTGCAGTGGAGCAGACT-GAATAAGTAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAATAA-TAG
* * * * ** * * *
27183712 GTCTTGTCCCCCTGAGGTTGCAGTGGGGCAGACT-GAAT-ATGGCG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAATAAT--AG
** * * * **
27183756 TATCTTATCTTTCT-AAGGGTGCAATGGAGCAGATTAAAGCCAATA-
1 -ATCTTATCTCCCTGAA-GTTGCAGTGGAACAGATTAAA-ATAATAG
* * * * * *
27183801 ATCCTATTTCCCTAAAATTGCAGTGGAGCTGATTAAAATAATAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAATAATAG
** * *** *** *
27183845 ATCTTATCTCTTTGAAGTTGCAGTAGTGTAGA-TCGCAT--CAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAATAATAG
* * * * * * * *
27183886 GTCTTATCTCCCTGAGGTTGTAGCGGAGCAGATT-GAGTAAGCAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAATAA-TAG
* * * * * *** *
27183930 GTCTTATCCCCCTGAAGTTGCAGTAGG-GCAGACTGAAGATGGCAT
1 ATCTTATCTCCCTGAAGTTGCAGT-GGAACAGA-TTAAAATAATAG
* **
27183975 ATCTTATCTCCCT-AAGGTTGCAGTGGAGCAGATTAAAGCCAATA-
1 ATCTTATCTCCCTGAA-GTTGCAGTGGAACAGATTAAA-ATAATAG
* * * * * *
27184019 ATCTCATCTCCCTGAAGTTACAGCGGAGCGGATTAAAATGATAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAATAATAG
* *
27184063 ATCTTATCTCTCTAAAGTTGCAGT
1 ATCTTATCTCCCTGAAGTTGCAGT
27184087 AGAGCAGGTC
Statistics
Matches: 525, Mismatches: 159, Indels: 76
0.69 0.21 0.10
Matches are distributed among these distances:
41 87 0.17
42 4 0.01
43 28 0.05
44 315 0.60
45 84 0.16
46 5 0.01
48 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAATAATAG
Found at i:27183703 original size:218 final size:218
Alignment explanation
Indices: 27183321--27184103 Score: 1093
Period size: 218 Copynumber: 3.6 Consensus size: 218
27183311 AAAACAACGA
* * *
27183321 ATCTTATCTCCCTGAA-GATGCAGCGGACCAGATTAAAGCCAATAATCCTATCTCCCTAAAGTTG
1 ATCTTATCTCCCT-AAGGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTAAAGTTG
** * *
27183385 CAGTGGAGTAGATTAAAATAATAGATATTATCTCTCTGAAGTTGTAGTAGAGTAGATCGCATTAG
65 CAGTGGAGCGGATTAAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATTAG
* *
27183450 GTCTTATCTCCCTGAGGTTGCAGCGGAGTAGACTGAGTAAGTAGGTCTTATCCTCCTGAGGTTGC
130 GTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGTAGGTCTTATCCCCCTGAGGTTGC
* *
27183515 AGTGGGGCAGGCTGAAAATGGCGG
195 AGTGGGGCAGACTGAAAATGGCGT
* * * * * * *
27183539 ATCTTATCTCTCTGAGGTTGCAGTGGAACAGATTAAAGCTAATAATTCTATTTCCCTGAAGTTGC
1 ATCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTAAAGTTGC
* *
27183604 AGTGGAGCGGATTAAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAATATATCGCATTAGG
66 AGTGGAGCGGATTAAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATTAGG
* * * *
27183669 TCTTCTCTCCCTGAGGTTGCAGTGGAGCAGACTGAATAAGTAGGTCTTGTCCCCCTGAGGTTGCA
131 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGTAGGTCTTATCCCCCTGAGGTTGCA
*
27183734 GTGGGGCAGACTGAATATGGCGT
196 GTGGGGCAGACTGAAAATGGCGT
** * * * *
27183757 ATCTTATCTTTCTAAGGGTGCAATGGAGCAGATTAAAGCCAATAATCCTATTTCCCTAAAATTGC
1 ATCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTAAAGTTGC
* * * *
27183822 AGTGGAGCTGATTAAAATAATAGATCTTATCTCTTTGAAGTTGCAGTAGTGTAGATCGCATCAGG
66 AGTGGAGCGGATTAAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATTAGG
* * * *
27183887 TCTTATCTCCCTGAGGTTGTAGCGGAGCAGATTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCA
131 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGTAGGTCTTATCCCCCTGAGGTTGCA
* * *
27183952 GTAGGGCAGACTGAAGATGGCAT
196 GTGGGGCAGACTGAAAATGGCGT
* *
27183975 ATCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTAAAGCCAATAAT-CTCATCTCCCTGAAGTTA
1 ATCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTAAAGCCAATAATCCT-ATCTCCCTAAAGTTG
* * * * *
27184039 CAGCGGAGCGGATTAAAATGATAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGGTCGCATTAG
65 CAGTGGAGCGGATTAAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATTAG
27184104 ACTTTTCTCT
Statistics
Matches: 496, Mismatches: 67, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
217 3 0.01
218 493 0.99
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (218 bp):
ATCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTAAAGTTGC
AGTGGAGCGGATTAAAATAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATTAGG
TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGTAGGTCTTATCCCCCTGAGGTTGCA
GTGGGGCAGACTGAAAATGGCGT
Found at i:27184641 original size:23 final size:24
Alignment explanation
Indices: 27184584--27184642 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 24
27184574 TTCTTCAAGG
27184584 ATATGCAATCTT---AGATATGAT
1 ATATGCAATCTTAGAAGATATGAT
27184605 ATATGCAATCTTAGAAGATATGAT
1 ATATGCAATCTTAGAAGATATGAT
* *
27184629 -TTTGTAATCTTAGA
1 ATATGCAATCTTAGA
27184643 GATTTAAGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.36
23 12 0.36
24 9 0.27
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.39
Consensus pattern (24 bp):
ATATGCAATCTTAGAAGATATGAT
Found at i:27185226 original size:36 final size:36
Alignment explanation
Indices: 27185151--27185226 Score: 93
Period size: 36 Copynumber: 2.1 Consensus size: 36
27185141 CACACATACG
*
27185151 TTTTATAATATATATATATACGTACACATTTTTTAAT
1 TTTTATAATATATATATATACG-ACACATTTTATAAT
*
27185188 TTTTATAA-ATATATATATAC-ACATACTTTTATATAT
1 TTTTATAATATATATATATACGACACA-TTTTATA-AT
27185224 TTT
1 TTT
27185227 CTATGTTTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
34 4 0.11
35 6 0.17
36 17 0.49
37 8 0.23
ACGTcount: A:0.38, C:0.08, G:0.01, T:0.53
Consensus pattern (36 bp):
TTTTATAATATATATATATACGACACATTTTATAAT
Found at i:27185359 original size:23 final size:22
Alignment explanation
Indices: 27185330--27185373 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
27185320 ATAATTCACA
*
27185330 TACATATATATTTTTCTTATATG
1 TACATATATATATTT-TTATATG
27185353 TACATATATATATTTTTATAT
1 TACATATATATATTTTTATAT
27185374 TTTATAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57
Consensus pattern (22 bp):
TACATATATATATTTTTATATG
Found at i:27186363 original size:61 final size:60
Alignment explanation
Indices: 27186264--27186377 Score: 183
Period size: 61 Copynumber: 1.9 Consensus size: 60
27186254 TTTTTCTGAA
*
27186264 TTTTGTGGACCAAAATCGTTGTTTTAATAAACTCAAATCGCTTATTAAAAATAATCATTT
1 TTTTGTGGACCAAAATCATTGTTTTAATAAACTCAAATCGCTTATTAAAAATAATCATTT
** *
27186324 TTTTCGTGGACCAAAATCATTGTTTTAATAATGTCAAATCGTTTATTAAAAATA
1 TTTT-GTGGACCAAAATCATTGTTTTAATAAACTCAAATCGCTTATTAAAAATA
27186378 TTTACTTTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
60 4 0.08
61 45 0.92
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (60 bp):
TTTTGTGGACCAAAATCATTGTTTTAATAAACTCAAATCGCTTATTAAAAATAATCATTT
Found at i:27190326 original size:30 final size:30
Alignment explanation
Indices: 27190292--27190360 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
27190282 ATTATAAAAA
*
27190292 AATTAAATGATGTGGATGTGAAACTTGAAT
1 AATTAAATGACGTGGATGTGAAACTTGAAT
27190322 AATTAAATGACGTGGATGTGAAACTTGAAT
1 AATTAAATGACGTGGATGTGAAACTTGAAT
27190352 AATTAAATG
1 AATTAAATG
27190361 GAGTTTTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.42, C:0.04, G:0.22, T:0.32
Consensus pattern (30 bp):
AATTAAATGACGTGGATGTGAAACTTGAAT
Found at i:27190463 original size:23 final size:26
Alignment explanation
Indices: 27190400--27190461 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
27190390 ATAAAAGATA
*
27190400 ATCAAAATATTATAATTTTTTTATTT
1 ATCAAAATATTATAATTTTTTTATCT
27190426 ATCAAAATATTATAATTTTTTTATCT
1 ATCAAAATATTATAATTTTTTTATCT
*
27190452 ACCAAAATAT
1 ATCAAAATAT
27190462 AAAAAATAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (26 bp):
ATCAAAATATTATAATTTTTTTATCT
Found at i:27190927 original size:19 final size:18
Alignment explanation
Indices: 27190880--27190927 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
27190870 GTTTTATGAT
*
27190880 TATTTTAATTAAATAAAC
1 TATTTTAATTTAATAAAC
* * *
27190898 TATTCTCATTTAATAACTC
1 TATTTTAATTTAATAA-AC
27190917 TATTTTAATTT
1 TATTTTAATTT
27190928 TAAAAAAAAT
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
18 13 0.57
19 10 0.43
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (18 bp):
TATTTTAATTTAATAAAC
Found at i:27191028 original size:18 final size:19
Alignment explanation
Indices: 27190965--27191023 Score: 84
Period size: 19 Copynumber: 3.2 Consensus size: 19
27190955 TTTAATTTTT
27190965 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
27190984 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
27191002 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
27191021 TTA
1 TTA
27191024 CTTAATTAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
18 15 0.45
19 18 0.55
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (19 bp):
TTAAATTAAAATAGAGTTA
Found at i:27191602 original size:27 final size:27
Alignment explanation
Indices: 27191572--27191635 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
27191562 TTTTTTTTGT
*
27191572 ATATTTTAGTAAATAAAAAAATTTATA
1 ATATTTTAGTAAATAAAAAAAATTATA
*
27191599 ATATTTTGGTAAATAAAAAAAATTATA
1 ATATTTTAGTAAATAAAAAAAATTATA
27191626 ATATTTTAGT
1 ATATTTTAGT
27191636 CATTTTTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (27 bp):
ATATTTTAGTAAATAAAAAAAATTATA
Found at i:27192243 original size:17 final size:18
Alignment explanation
Indices: 27192223--27192261 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
27192213 GTTTTAGTTT
27192223 TTTTGGTATTTTTAAT-A
1 TTTTGGTATTTTTAATAA
**
27192240 TTTTTTTATTTTTAATAA
1 TTTTGGTATTTTTAATAA
27192258 TTTT
1 TTTT
27192262 TTAAATTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (18 bp):
TTTTGGTATTTTTAATAA
Found at i:27192262 original size:17 final size:17
Alignment explanation
Indices: 27192229--27192264 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
27192219 GTTTTTTTGG
*
27192229 TATTTTTAATATTTTTT
1 TATTTTTAATAATTTTT
27192246 TATTTTTAATAATTTTT
1 TATTTTTAATAATTTTT
27192263 TA
1 TA
27192265 AATTTTGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
TATTTTTAATAATTTTT
Found at i:27198537 original size:34 final size:34
Alignment explanation
Indices: 27198494--27198558 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
27198484 CTATATTTCG
27198494 TCTGATTTCTTTCATTACATCCTCACACCAACTA
1 TCTGATTTCTTTCATTACATCCTCACACCAACTA
*
27198528 TCTGATTTCTTTCATTACATCCTTACACCAA
1 TCTGATTTCTTTCATTACATCCTCACACCAA
27198559 GTATGGTAGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.26, C:0.31, G:0.03, T:0.40
Consensus pattern (34 bp):
TCTGATTTCTTTCATTACATCCTCACACCAACTA
Found at i:27199299 original size:18 final size:17
Alignment explanation
Indices: 27199276--27199333 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 17
27199266 GCTGTCATTT
*
27199276 TTCCTCACTTGTATCTTC
1 TTCCTCA-TTGCATCTTC
*
27199294 TTCCTCAGTCGCATCTTC
1 TTCCTCA-TTGCATCTTC
*
27199312 TTCTTCATCTGCATCTTC
1 TTCCTCAT-TGCATCTTC
27199330 TTCC
1 TTCC
27199334 GTGGCCATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
17 1 0.03
18 32 0.97
ACGTcount: A:0.10, C:0.36, G:0.07, T:0.47
Consensus pattern (17 bp):
TTCCTCATTGCATCTTC
Found at i:27202204 original size:31 final size:31
Alignment explanation
Indices: 27202169--27202268 Score: 101
Period size: 31 Copynumber: 3.2 Consensus size: 31
27202159 ACTGAATTCT
27202169 TGAAAAGGTTATATCCAAAACGAATATCAAA
1 TGAAAAGGTTATATCCAAAACGAATATCAAA
* * * ** * *
27202200 TGAAAAGGTTGTTACCCTAAAAAGGTTAACATA
1 TGAAAAGGTT-ATATCC-AAAACGAATATCAAA
* *
27202233 TGAAAAGGTTATATCGAAAACGAATATCTAA
1 TGAAAAGGTTATATCCAAAACGAATATCAAA
27202264 TGAAA
1 TGAAA
27202269 TGTTGTTACC
Statistics
Matches: 51, Mismatches: 16, Indels: 4
0.72 0.23 0.06
Matches are distributed among these distances:
31 24 0.47
32 7 0.14
33 20 0.39
ACGTcount: A:0.48, C:0.11, G:0.16, T:0.25
Consensus pattern (31 bp):
TGAAAAGGTTATATCCAAAACGAATATCAAA
Found at i:27202241 original size:33 final size:33
Alignment explanation
Indices: 27202199--27202302 Score: 90
Period size: 33 Copynumber: 3.2 Consensus size: 33
27202189 CGAATATCAA
27202199 ATGAAAAGGTTGTTACCCTAAAAAGGTTAACAT
1 ATGAAAAGGTTGTTACCCTAAAAAGGTTAACAT
* * * * ** *
27202232 ATGAAAAGGTT-ATA-TCGAAAACGAATATC-T
1 ATGAAAAGGTTGTTACCCTAAAAAGGTTAACAT
* *
27202262 AATG-AAATGTTGTTACCCTAAAAGGGTTAACAT
1 -ATGAAAAGGTTGTTACCCTAAAAAGGTTAACAT
27202295 ATGAAAAG
1 ATGAAAAG
27202303 TTTTATTGAA
Statistics
Matches: 50, Mismatches: 16, Indels: 10
0.66 0.21 0.13
Matches are distributed among these distances:
30 7 0.14
31 14 0.28
32 14 0.28
33 15 0.30
ACGTcount: A:0.44, C:0.11, G:0.18, T:0.27
Consensus pattern (33 bp):
ATGAAAAGGTTGTTACCCTAAAAAGGTTAACAT
Found at i:27209252 original size:15 final size:15
Alignment explanation
Indices: 27209220--27209253 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
27209210 AAAAAACCCC
*
27209220 TAAACCTAAAAACCT
1 TAAACCTAAAAACAT
*
27209235 TAAACCTAAAAATAT
1 TAAACCTAAAAACAT
27209250 TAAA
1 TAAA
27209254 AACCTTAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.18, G:0.00, T:0.24
Consensus pattern (15 bp):
TAAACCTAAAAACAT
Found at i:27209258 original size:24 final size:24
Alignment explanation
Indices: 27209226--27209281 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
27209216 CCCCTAAACC
* *
27209226 TAAAAACCTTAAACCTAAAAATAT
1 TAAAAACCTTAAACCTAAAAAAAA
*
27209250 TAAAAACCTTAAACTTAAAAAAAA
1 TAAAAACCTTAAACCTAAAAAAAA
27209274 TAAAAACC
1 TAAAAACC
27209282 CTAACCTTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.62, C:0.16, G:0.00, T:0.21
Consensus pattern (24 bp):
TAAAAACCTTAAACCTAAAAAAAA
Found at i:27226910 original size:20 final size:20
Alignment explanation
Indices: 27226881--27226921 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
27226871 ATATAGTAAC
*
27226881 CTTTAGTGATTTTATTAGTT
1 CTTTAATGATTTTATTAGTT
27226901 CTTTAATGATTTTATTAGTT
1 CTTTAATGATTTTATTAGTT
27226921 C
1 C
27226922 CAAATAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.22, C:0.07, G:0.12, T:0.59
Consensus pattern (20 bp):
CTTTAATGATTTTATTAGTT
Found at i:27227531 original size:72 final size:72
Alignment explanation
Indices: 27227414--27227558 Score: 272
Period size: 72 Copynumber: 2.0 Consensus size: 72
27227404 CCACCGAGTA
27227414 CGAAAAGATTATTAACAATAGATGGAATCTTATGCATTCCGACTTGCATTCAGCTGGTAAGATAA
1 CGAAAAGATTATTAACAATAGATGGAATCTTATGCATTCCGACTTGCATTCAGCTGGTAAGATAA
27227479 AATGTTT
66 AATGTTT
* *
27227486 CGAAAAGATTATTGACAATAGATGGAATTTTATGCATTCCGACTTGCATTCAGCTGGTAAGATAA
1 CGAAAAGATTATTAACAATAGATGGAATCTTATGCATTCCGACTTGCATTCAGCTGGTAAGATAA
27227551 AATGTTT
66 AATGTTT
27227558 C
1 C
27227559 ATATAATTAA
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (72 bp):
CGAAAAGATTATTAACAATAGATGGAATCTTATGCATTCCGACTTGCATTCAGCTGGTAAGATAA
AATGTTT
Found at i:27240396 original size:15 final size:15
Alignment explanation
Indices: 27240376--27240409 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
27240366 TAAATAATGC
27240376 TTACATTATATTCTA
1 TTACATTATATTCTA
*
27240391 TTACATTATATTTTA
1 TTACATTATATTCTA
27240406 TTAC
1 TTAC
27240410 TCAAAGTGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (15 bp):
TTACATTATATTCTA
Found at i:27241258 original size:84 final size:82
Alignment explanation
Indices: 27241162--27241327 Score: 208
Period size: 82 Copynumber: 2.0 Consensus size: 82
27241152 CGTTACAAAA
* * *
27241162 TGATTAGCTAAGAAATTTTTTTTATGGTTGGGGTAATTTAGG-TAACATATTATAATTTAAGTAT
1 TGATTAGCTAAGAAA--TTTTTTATGGTTAGGATAATTT-GGATAACAGATTATAATTTAAGTAT
* * *
27241226 TACTTTGGGTAACATAATAT
63 TACTTTAGATAACAAAATAT
* * * *
27241246 TGATTAGTTAAGAGATTTTTTATGGTTAGGATAATTTGGATAACAGATTGTAATTTAGGTATTAC
1 TGATTAGCTAAGAAATTTTTTATGGTTAGGATAATTTGGATAACAGATTATAATTTAAGTATTAC
27241311 TTTAGATAACAAAATAT
66 TTTAGATAACAAAATAT
27241328 GGTTTAAGTA
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
81 2 0.03
82 56 0.79
84 13 0.18
ACGTcount: A:0.35, C:0.04, G:0.18, T:0.43
Consensus pattern (82 bp):
TGATTAGCTAAGAAATTTTTTATGGTTAGGATAATTTGGATAACAGATTATAATTTAAGTATTAC
TTTAGATAACAAAATAT
Found at i:27243162 original size:25 final size:24
Alignment explanation
Indices: 27243133--27243181 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
27243123 ATTTTTTTCT
*
27243133 AAAATTTAATAAAATTAATATTTTA
1 AAAATATAATAAAATTAAT-TTTTA
* *
27243158 AAAATATAATTAATTTAATTTTTA
1 AAAATATAATAAAATTAATTTTTA
27243182 TTATAATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
AAAATATAATAAAATTAATTTTTA
Found at i:27247588 original size:19 final size:19
Alignment explanation
Indices: 27247564--27247601 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
27247554 TTGGCCACGT
*
27247564 TGGGCTGAAATGGG-TCGTG
1 TGGGCTCAAA-GGGCTCGTG
27247583 TGGGCTCAAAGGGCTCGTG
1 TGGGCTCAAAGGGCTCGTG
27247602 GGCCTCACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.16, C:0.16, G:0.45, T:0.24
Consensus pattern (19 bp):
TGGGCTCAAAGGGCTCGTG
Found at i:27247853 original size:26 final size:26
Alignment explanation
Indices: 27247824--27247877 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
27247814 ATGACTGTAA
* *
27247824 TGCCCCTGGAGGGTAAATGACTATTT
1 TGCCCCTCGAGGGTAAATGACTAATT
27247850 TGCCCCTCGAGGGTAAATGACTAATT
1 TGCCCCTCGAGGGTAAATGACTAATT
27247876 TG
1 TG
27247878 TGCTATGGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
TGCCCCTCGAGGGTAAATGACTAATT
Found at i:27249575 original size:27 final size:27
Alignment explanation
Indices: 27249549--27249862 Score: 420
Period size: 27 Copynumber: 11.7 Consensus size: 27
27249539 GATTGAAATA
*
27249549 CCCCTGTAGGGTAAAATGACCGTAATA
1 CCCCTGTAGGGTAAAATGACCGTAATG
* * * *
27249576 CTCATTTAGGGTAAAATAACCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* * *
27249603 CCCCTGTAGGGTAAAATAACTGTAATA
1 CCCCTGTAGGGTAAAATGACCGTAATG
*
27249630 CCCCTATAGGGTAAAATGACCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* *
27249657 CCCCTGTAGGGTAAAATAATCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* *
27249684 CCCCTGTAGGCTAAAATGATCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* *
27249711 CCCATATAGGGTAAAATGACCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* *
27249738 CCCCTATAGGGTAAAATGACTGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
27249765 CCCCTGTAGGGTAAAATGACCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* *
27249792 -CCCTGTAGGGTAAAATAATCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
27249818 CCCCTGTAGGGTAAAATGACCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
27249845 -CCCTGGT-GGGT-AAATGAC
1 CCCCT-GTAGGGTAAAATGAC
27249863 TATTTTTGCC
Statistics
Matches: 254, Mismatches: 31, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
25 7 0.03
26 32 0.13
27 215 0.85
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.25
Consensus pattern (27 bp):
CCCCTGTAGGGTAAAATGACCGTAATG
Found at i:27249940 original size:24 final size:24
Alignment explanation
Indices: 27249884--27249965 Score: 87
Period size: 24 Copynumber: 3.5 Consensus size: 24
27249874 CTTGAGGTCA
* * * *
27249884 AATGATTGTTTTATCTGTG-GTTA
1 AATGACTGATTTATCTGTGATTTG
*
27249907 AATGACTGATTTGTCTGTG-TTTGG
1 AATGACTGATTTATCTGTGATTT-G
*
27249931 TATGACTGATTTATCTGTGATTTG
1 AATGACTGATTTATCTGTGATTTG
27249955 AATGACTGATT
1 AATGACTGATT
27249966 CTGAGCATGA
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
23 18 0.37
24 28 0.57
25 3 0.06
ACGTcount: A:0.22, C:0.07, G:0.23, T:0.48
Consensus pattern (24 bp):
AATGACTGATTTATCTGTGATTTG
Found at i:27250077 original size:27 final size:26
Alignment explanation
Indices: 27250039--27250099 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
27250029 TACTATAGTA
*
27250039 GTGGCTCTGCCACA-ATCACTGTTACTG
1 GTGGCT-TGCCACATAT-ACTATTACTG
27250066 GTGGCTTGGCCACATATACTATTACTG
1 GTGGCTT-GCCACATATACTATTACTG
*
27250093 GTAGCTT
1 GTGGCTT
27250100 TGCTGTGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 1 0.03
27 27 0.90
28 2 0.07
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.33
Consensus pattern (26 bp):
GTGGCTTGCCACATATACTATTACTG
Found at i:27250139 original size:26 final size:26
Alignment explanation
Indices: 27250081--27250141 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
27250071 TTGGCCACAT
* **
27250081 ATACTATTACTGGTAGCTTTGCTGTG
1 ATACTATTGCTGGTAGCTTTGCTACG
27250107 ATACTATTGCTGGTAGCTTTGCTACG
1 ATACTATTGCTGGTAGCTTTGCTACG
*
27250133 ATGCTATTG
1 ATACTATTG
27250142 ATGGCTTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (26 bp):
ATACTATTGCTGGTAGCTTTGCTACG
Found at i:27250181 original size:32 final size:32
Alignment explanation
Indices: 27250140--27250377 Score: 155
Period size: 32 Copynumber: 7.4 Consensus size: 32
27250130 ACGATGCTAT
* *
27250140 TGATGGCTTTGTACCGGTCATAGTACCATTAC
1 TGATGGCTTTGTACCGATCATAGTACCGTTAC
**
27250172 TGATGGCTTTGTGTCGATCATAGTACCGTTAC
1 TGATGGCTTTGTACCGATCATAGTACCGTTAC
* * *
27250204 TGATGTCTTTGTTCCGATCATATTACCGTTA-
1 TGATGGCTTTGTACCGATCATAGTACCGTTAC
* ** * *
27250235 TCGATGGCTGTGTGTCGATCAT-TTCACTGTTAC
1 T-GATGGCTTTGTACCGATCATAGT-ACCGTTAC
* * * *
27250268 TGATGG-TTGTGTGCCTATCATA-TCACTGCTAC
1 TGATGGCTT-TGTACCGATCATAGT-ACCGTTAC
* ** *
27250300 TGATGCCTTTGTGTCGATCAT-GTTACCATTAC
1 TGATGGCTTTGTACCGATCATAG-TACCGTTAC
* * *
27250332 TGATGGCGTTGTGTGCCGATCATA-TCACTGCTAC
1 TGATGGC-TT-TGTACCGATCATAGT-ACCGTTAC
27250366 TGATGGCTTTGT
1 TGATGGCTTTGT
27250378 GCCAATCACA
Statistics
Matches: 166, Mismatches: 28, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
31 4 0.02
32 130 0.78
33 9 0.05
34 23 0.14
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.39
Consensus pattern (32 bp):
TGATGGCTTTGTACCGATCATAGTACCGTTAC
Found at i:27250241 original size:64 final size:63
Alignment explanation
Indices: 27250140--27250378 Score: 241
Period size: 64 Copynumber: 3.7 Consensus size: 63
27250130 ACGATGCTAT
* * **
27250140 TGATGGCTTTGTACCGGTCATAGT-ACCATTACTGATGGCTTTGTGTCGATCATAGTACCGTTAC
1 TGATGGCTTTGTGCCGATCATA-TCACCGCTACTGATGGCTTTGTGTCGATCAT-GTACCGTTAC
* * * * * * *
27250204 TGATGTCTTTGTTCCGATCATATTACCGTTA-TCGATGGCTGTGTGTCGATCATTTCACTGTTAC
1 TGATGGCTTTGTGCCGATCATATCACCGCTACT-GATGGCTTTGTGTCGATCATGT-ACCGTTAC
* * * *
27250268 TGATGG-TTGTGTGCCTATCATATCACTGCTACTGATGCCTTTGTGTCGATCATGTTACCATTAC
1 TGATGGCTT-TGTGCCGATCATATCACCGCTACTGATGGCTTTGTGTCGATCATG-TACCGTTAC
*
27250332 TGATGGCGTTGTGTGCCGATCATATCACTGCTACTGATGGCTTTGTG
1 TGATGGC-TT-TGTGCCGATCATATCACCGCTACTGATGGCTTTGTG
27250379 CCAATCACAT
Statistics
Matches: 147, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
63 5 0.03
64 103 0.70
65 2 0.01
66 37 0.25
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (63 bp):
TGATGGCTTTGTGCCGATCATATCACCGCTACTGATGGCTTTGTGTCGATCATGTACCGTTAC
Found at i:27253963 original size:50 final size:49
Alignment explanation
Indices: 27253833--27253966 Score: 178
Period size: 49 Copynumber: 2.7 Consensus size: 49
27253823 GGTGGAAGTA
* *
27253833 AGTGGCAGTTTATCTGCAAATTAGTGGTGGCTTGTCCATAAAGTGTTTC
1 AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTTTC
* ** * * *
27253882 AGTGGGAGCATATTTGCATATCAATGGTGGCTTGTCCACAAAGTGTTATC
1 AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTT-TC
*
27253932 AGTGGCAATTTATCTGCAAATCAGTGGTGGCTTGT
1 AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGT
27253967 TTTGGATAAA
Statistics
Matches: 69, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
49 39 0.57
50 30 0.43
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (49 bp):
AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTTTC
Found at i:27258126 original size:27 final size:27
Alignment explanation
Indices: 27258096--27258158 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
27258086 GTCAGATTTT
*
27258096 GCCACAAAGACTA-TCTATATAGAGTAA
1 GCCACAAAGACGATTC-ATATAGAGTAA
* *
27258123 GCCACAAAGGCGATTCATATAGAGTAC
1 GCCACAAAGACGATTCATATAGAGTAA
*
27258150 GCTACAAAG
1 GCCACAAAG
27258159 GATGATGGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 29 0.94
28 2 0.06
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.19
Consensus pattern (27 bp):
GCCACAAAGACGATTCATATAGAGTAA
Found at i:27261894 original size:49 final size:49
Alignment explanation
Indices: 27261834--27262124 Score: 228
Period size: 50 Copynumber: 5.8 Consensus size: 49
27261824 GATAATAACA
* * *
27261834 TGCCAAAGCCATATCCCAGACATGGTCTTACATGGGATGTT-TCCTGTAC-
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CG
*
27261883 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATATC-G
* * * ** ** *
27261933 TGCCCATGCCATGTCCCATACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATATC-G
* * ** *
27261983 TGCCAACGCCATGTCCCAGA-ATGGTCTTACATGGGACCTCTCATCTCCG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATAT-CG
* ** * * **
27262032 TGCCAACGCCATGCCCCATAAATGGTCTTACATGGGACCTCTCATAATCTCAATG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCAT-A--TC---G
*
27262087 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 -TGCCAATGCCATATCCCAGACATGGTCTTACATGGGA
27262125 TCTCTTTACC
Statistics
Matches: 205, Mismatches: 25, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
48 4 0.02
49 82 0.40
50 83 0.40
52 1 0.00
53 1 0.00
55 1 0.00
56 33 0.16
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (49 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATATCG
Found at i:27261958 original size:50 final size:50
Alignment explanation
Indices: 27261834--27262129 Score: 283
Period size: 49 Copynumber: 5.8 Consensus size: 50
27261824 GATAATAACA
* * ** * * *
27261834 TGCCAAAGCCATATCCCAGACATGGTCTTACATGGGATGTTTCCTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGG
* * **
27261883 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * ** *
27261933 TGCCCATGCCATGTCCCATACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
27261983 TGCCAACGCCATGTCCCAGA-ATGGTCTTACATGGGACCTCTCATCTCCG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * * * *
27262032 TGCCAACGCCATGCCCCATAAATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
*
27262088 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
27262130 TTACCCAAAT
Statistics
Matches: 206, Mismatches: 32, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
48 1 0.00
49 84 0.41
50 82 0.40
53 2 0.01
56 37 0.18
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:27262012 original size:99 final size:102
Alignment explanation
Indices: 27261883--27262129 Score: 302
Period size: 99 Copynumber: 2.4 Consensus size: 102
27261873 TTTCCTGTAC
* * ** * * * *
27261883 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCCGTGCCAACGCCATGCC
* * *
27261948 CCATACATGGTCTTACGGGGGACCTCTC-ATCTC-GG
66 CCATAAATGGTCTTACAGGGGACCTCTCAATCTCAGA
* *
27261983 TGCCAACGCCATGTCCCAGA-ATGGTCTTACATGGGACCTCTCATCTCCGTGCCAACGCCATGCC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCCGTGCCAACGCCATGCC
*
27262047 CCATAAATGGTCTTACATGGGACCTCTCATAATCTCAATGA
66 CCATAAATGGTCTTACAGGGGACCTCTC--AATCTC-A-GA
*
27262088 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
27262130 TTACCCAAAT
Statistics
Matches: 125, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
99 62 0.50
100 18 0.14
102 5 0.04
105 20 0.16
106 20 0.16
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (102 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCCGTGCCAACGCCATGCC
CCATAAATGGTCTTACAGGGGACCTCTCAATCTCAGA
Found at i:27263177 original size:22 final size:22
Alignment explanation
Indices: 27263117--27263174 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
27263107 AATCTTCAAG
27263117 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
27263136 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
27263158 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
27263175 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:27263403 original size:23 final size:23
Alignment explanation
Indices: 27263359--27263403 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
27263349 TCTTATTTTG
* *
27263359 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
27263382 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
27263404 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:27265240 original size:45 final size:44
Alignment explanation
Indices: 27265119--27265450 Score: 175
Period size: 44 Copynumber: 7.6 Consensus size: 44
27265109 GATCGCATCT
* *
27265119 AGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAGTAAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGGAAGCA
* * *
27265163 AGCCTTATC-CTCCTGAAGTTGTAGT-GAGGCAGACTGAGGATGGCGA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAGGA-AGC-A
* *
27265209 A-TCTTATCTCCCTGAAGTCGCAGTGGAGCAGA-TTA--AAGCCAA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGGAAG-C-A
* * ** * * *
27265251 TAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGA-TTA-AAATCA
1 -AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGGAAGCA
* * * * * *
27265294 CAGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T--CGCATCG
1 -AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGGAAGCA
* * * * ** * *
27265336 GGTCTTATCTCCCTGAAATTACAGTGGAGTAGACCCAAGAAAGCG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTGAGGAAGCA
* * * *
27265381 AGTCTTACCTCCCTGAAGTTGCAGTGGAGCAGACTCATGAAATCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA-GGAAGCA
* *
27265426 AGTCTTATCCCCCTGAAATTGCAGT
1 AGTCTTATCTCCCTGAAGTTGCAGT
27265451 AGGTCAGACT
Statistics
Matches: 221, Mismatches: 49, Indels: 35
0.72 0.16 0.11
Matches are distributed among these distances:
40 19 0.09
41 8 0.04
42 6 0.03
43 12 0.05
44 86 0.39
45 85 0.38
46 5 0.02
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (44 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGGAAGCA
Found at i:27265459 original size:45 final size:44
Alignment explanation
Indices: 27265337--27265460 Score: 117
Period size: 45 Copynumber: 2.8 Consensus size: 44
27265327 ATCGCATCGG
* * * *
27265337 GTCTTATCTCCCTGAAATTACAGTGGAGT-AGACCCAAGAAAGCGA
1 GTCTTATCCCCCTGAAATTGCAGT-G-GTCAGACTCAAGAAAGCAA
* * * *
27265382 GTCTTA-CCTCCCTGAAGTTGCAGTGGAGCAGACTCATGAAATCAA
1 GTCTTATCC-CCCTGAAATTGCAGTGG-TCAGACTCAAGAAAGCAA
27265427 GTCTTATCCCCCTGAAATTGCAGTAGGTCAGACT
1 GTCTTATCCCCCTGAAATTGCAGT-GGTCAGACT
27265461 AAATAAACAA
Statistics
Matches: 64, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.02
44 2 0.03
45 57 0.89
46 4 0.06
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (44 bp):
GTCTTATCCCCCTGAAATTGCAGTGGTCAGACTCAAGAAAGCAA
Found at i:27266037 original size:19 final size:19
Alignment explanation
Indices: 27266013--27266104 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
27266003 AATCTTCAAA
27266013 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
27266032 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
27266051 GATATGCAATCTTAGATAC
1 GATATGCAATCTTAGATAT
*
27266070 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
27266089 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
27266105 AGATATGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:27266057 original size:38 final size:38
Alignment explanation
Indices: 27266013--27266127 Score: 176
Period size: 38 Copynumber: 2.9 Consensus size: 38
27266003 AATCTTCAAA
27266013 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
*
27266051 GATATGCAATCTTAGATACGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
*
27266089 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT---AGATATGA-TATGTAATCTTAGA
27266128 GATTTAATTT
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
38 50 0.71
41 7 0.10
42 13 0.19
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.38
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
Found at i:27266126 original size:23 final size:22
Alignment explanation
Indices: 27266013--27266127 Score: 92
Period size: 19 Copynumber: 5.7 Consensus size: 22
27266003 AATCTTCAAA
27266013 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
*
27266032 GATATGTAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
*
27266051 GATATGCAATCTT---AGATAC
1 GATATGCAATCTTAGAAGATAT
*
27266070 GATATGTAATCTTAG---ATAT
1 GATATGCAATCTTAGAAGATAT
27266089 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
27266111 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
27266128 GATTTAATTT
Statistics
Matches: 82, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
19 64 0.78
22 6 0.07
23 12 0.15
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:27266356 original size:23 final size:23
Alignment explanation
Indices: 27266312--27266356 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
27266302 TCTTATTTTG
* *
27266312 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
27266335 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
27266357 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:27266577 original size:3 final size:3
Alignment explanation
Indices: 27266569--27266595 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
27266559 ATTAATCTTG
27266569 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
27266596 ATTCATGCGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:27266887 original size:16 final size:14
Alignment explanation
Indices: 27266866--27266899 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 14
27266856 TTCTCAACAC
27266866 ATATGTTATATTATAT
1 ATATG-TATATT-TAT
27266882 ATATGTATATTTAT
1 ATATGTATATTTAT
27266896 ATAT
1 ATAT
27266900 TTTTCTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 6 0.33
16 5 0.28
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (14 bp):
ATATGTATATTTAT
Found at i:27271059 original size:8 final size:8
Alignment explanation
Indices: 27271046--27271071 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
27271036 GATTTTTGAT
27271046 GAATTTTG
1 GAATTTTG
27271054 GAATTTTG
1 GAATTTTG
27271062 GAATTTTG
1 GAATTTTG
27271070 GA
1 GA
27271072 CTAATTTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (8 bp):
GAATTTTG
Found at i:27277291 original size:50 final size:50
Alignment explanation
Indices: 27277167--27277350 Score: 187
Period size: 50 Copynumber: 3.7 Consensus size: 50
27277157 GATAATAACA
* * *
27277167 TGCCAAAGACATGTCCCAAACATGGTCTTACATGGGATGTTTCTTGTA-C--
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGA-G-TTCTTATATCGG
* *
27277216 TACCAATGCCATGTCCCAAATATGGTCTTACATGGGAGTTCTTATATCGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGAGTTCTTATATCGG
* * * ** * *
27277266 TGCCCATGCCATGTCCCAGACATGGTCTTATGA-GGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTA-CATGGGAGTTCTTATATCGG
* *
27277316 TGCCAACGCCATGTCCCAGACATGGTCTTACATGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGG
27277351 AACCTTTCAT
Statistics
Matches: 113, Mismatches: 17, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
47 7 0.06
48 2 0.02
49 34 0.30
50 69 0.61
51 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGAGTTCTTATATCGG
Found at i:27285311 original size:27 final size:27
Alignment explanation
Indices: 27285269--27285406 Score: 186
Period size: 27 Copynumber: 5.1 Consensus size: 27
27285259 AAGATGTTAG
* *
27285269 GAAAGAAAAGCTTTTGTTGCGAACTCT
1 GAAAGAAAAGCCTTTGTGGCGAACTCT
* *
27285296 GAAAGAAAAGCCTTTGTGGCAAACCCT
1 GAAAGAAAAGCCTTTGTGGCGAACTCT
* * *
27285323 GAAAGAAAAGCCTTTATGGTGAGCTCT
1 GAAAGAAAAGCCTTTGTGGCGAACTCT
* *
27285350 GAAAGAAAAGCCTTTGTGGTGAGCTCT
1 GAAAGAAAAGCCTTTGTGGCGAACTCT
*
27285377 GAAAGAAAATCCTTTGTGGCGAACTCT
1 GAAAGAAAAGCCTTTGTGGCGAACTCT
27285404 GAA
1 GAA
27285407 TAAACTTTCC
Statistics
Matches: 98, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 98 1.00
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (27 bp):
GAAAGAAAAGCCTTTGTGGCGAACTCT
Found at i:27288805 original size:44 final size:44
Alignment explanation
Indices: 27288742--27289006 Score: 327
Period size: 44 Copynumber: 6.0 Consensus size: 44
27288732 AAGGGTGATT
*
27288742 AGGTGATTACATCAAAGGCATTGCCAACCACAACGTTTGAAAGA
1 AGGTGGTTACATCAAAGGCATTGCCAACCACAACGTTTGAAAGA
* ** **
27288786 AGGTGGTTACATCAAAGGCATTACCAACCACAAAATTTG-GTGA
1 AGGTGGTTACATCAAAGGCATTGCCAACCACAACGTTTGAAAGA
* * * *
27288829 TTAGGTGATTACATCAAAGGTATTTCCAACCACAATGTTTGAAAGA
1 --AGGTGGTTACATCAAAGGCATTGCCAACCACAACGTTTGAAAGA
* * *
27288875 GGGTGTTTACATCAAAGGCATTGCCAACCACAACGTTT-AAAAA
1 AGGTGGTTACATCAAAGGCATTGCCAACCACAACGTTTGAAAGA
**
27288918 AGGGTGGTTACATCAAAGGCATCACCAACCACAACGTTTGAAAGA
1 A-GGTGGTTACATCAAAGGCATTGCCAACCACAACGTTTGAAAGA
* * *
27288963 GGGTGGTTACATCAAAGGCATTGACAACCACAATGTTTGAAAGA
1 AGGTGGTTACATCAAAGGCATTGCCAACCACAACGTTTGAAAGA
27289007 CTAGTATACA
Statistics
Matches: 187, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
43 6 0.03
44 141 0.75
45 38 0.20
46 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (44 bp):
AGGTGGTTACATCAAAGGCATTGCCAACCACAACGTTTGAAAGA
Found at i:27288963 original size:88 final size:88
Alignment explanation
Indices: 27288742--27289004 Score: 348
Period size: 89 Copynumber: 3.0 Consensus size: 88
27288732 AAGGGTGATT
* *
27288742 AGGTGATTACATCAAAGGCATTGCCAACCACAACGTTTGAAAGAAGGTGGTTACATCAAAGGCAT
1 AGGTGATTACATCAAAGGCATTACCAACCACAACGTTTGAAAGAGGGTGGTTACATCAAAGGCAT
* * ** **
27288807 TACCAACCACAAAATTTGGTGATT
66 TGCCAACCACAAAGTTT-GAAAAA
* * * *
27288831 AGGTGATTACATCAAAGGTATTTCCAACCACAATGTTTGAAAGAGGGTGTTTACATCAAAGGCAT
1 AGGTGATTACATCAAAGGCATTACCAACCACAACGTTTGAAAGAGGGTGGTTACATCAAAGGCAT
*
27288896 TGCCAACCACAACGTTT-AAAAA
66 TGCCAACCACAAAGTTTGAAAAA
* *
27288918 AGGGTGGTTACATCAAAGGCATCACCAACCACAACGTTTGAAAGAGGGTGGTTACATCAAAGGCA
1 A-GGTGATTACATCAAAGGCATTACCAACCACAACGTTTGAAAGAGGGTGGTTACATCAAAGGCA
* *
27288983 TTGACAACCACAATGTTTGAAA
65 TTGCCAACCACAAAGTTTGAAA
27289005 GACTAGTATA
Statistics
Matches: 152, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
87 2 0.01
88 73 0.48
89 77 0.51
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (88 bp):
AGGTGATTACATCAAAGGCATTACCAACCACAACGTTTGAAAGAGGGTGGTTACATCAAAGGCAT
TGCCAACCACAAAGTTTGAAAAA
Found at i:27291011 original size:11 final size:11
Alignment explanation
Indices: 27290995--27291019 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
27290985 CACATCTAAT
27290995 CATACCAAAAA
1 CATACCAAAAA
27291006 CATACCAAAAA
1 CATACCAAAAA
27291017 CAT
1 CAT
27291020 GCAACCTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (11 bp):
CATACCAAAAA
Found at i:27292334 original size:20 final size:19
Alignment explanation
Indices: 27292309--27292375 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 19
27292299 GACGTGTAAC
* *
27292309 AGAGGCAACGAAGTGTAGAT
1 AGAGGCAACAAAGTG-AAAT
*
27292329 AGAGGCAA-AAATGTGCAAT
1 AGAGGCAACAAA-GTGAAAT
27292348 CAGAGGCAACAAAGTGAAAAT
1 -AGAGGCAACAAAGTG-AAAT
27292369 AGAGGCA
1 AGAGGCA
27292376 CCGAAGTGCA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 4 0.10
20 29 0.74
21 6 0.15
ACGTcount: A:0.46, C:0.12, G:0.30, T:0.12
Consensus pattern (19 bp):
AGAGGCAACAAAGTGAAAT
Found at i:27292657 original size:16 final size:16
Alignment explanation
Indices: 27292635--27292672 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
27292625 ATTTTGATAT
27292635 CATAATTAAAACCAAAA
1 CATAATT-AAACCAAAA
*
27292652 -ATAATTTAACCAAAA
1 CATAATTAAACCAAAA
27292667 CATAAT
1 CATAAT
27292673 ATCACAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.24
Consensus pattern (16 bp):
CATAATTAAACCAAAA
Found at i:27292840 original size:18 final size:19
Alignment explanation
Indices: 27292803--27292840 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
27292793 GATTCGTTTC
27292803 TTGATCTCAATATAATAAT
1 TTGATCTCAATATAATAAT
27292822 TTGAT-TCAAT-TAATCAAT
1 TTGATCTCAATATAAT-AAT
27292840 T
1 T
27292841 CATATATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
18 9 0.50
19 5 0.28
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (19 bp):
TTGATCTCAATATAATAAT
Found at i:27295007 original size:24 final size:25
Alignment explanation
Indices: 27294970--27295016 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
27294960 ACTGGTCATA
27294970 GAGAGAATTTAGGAG-GAATATTTG
1 GAGAGAATTTAGGAGAGAATATTTG
27294994 GAGA-AATTTGAGGAGAGAATATT
1 GAGAGAATTT-AGGAGAGAATATT
27295017 GGGATTTGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.24
24 9 0.43
25 7 0.33
ACGTcount: A:0.40, C:0.00, G:0.32, T:0.28
Consensus pattern (25 bp):
GAGAGAATTTAGGAGAGAATATTTG
Found at i:27295158 original size:120 final size:120
Alignment explanation
Indices: 27294996--27295235 Score: 471
Period size: 120 Copynumber: 2.0 Consensus size: 120
27294986 AATATTTGGA
27294996 GAAATTTGAGGAGAGAATATTGGGATTTGGGGAGGTTGTTGTTGTGGAGAGATAATAGTAGAAAA
1 GAAATTTGAGGAGAGAATATTGGGATTTGGGGAGGTTGTTGTTGTGGAGAGATAATAGTAGAAAA
27295061 TTAAGGGGATAGAAAGTGGATGGAGAGTGTGTAGCCGAATTGGAGGACGGATTTT
66 TTAAGGGGATAGAAAGTGGATGGAGAGTGTGTAGCCGAATTGGAGGACGGATTTT
27295116 GAAATTTGAGGAGAGAATATTGGGATTTGGGGAGGTTGTTGTTGTGGAGAGATAATAGTAGAAAA
1 GAAATTTGAGGAGAGAATATTGGGATTTGGGGAGGTTGTTGTTGTGGAGAGATAATAGTAGAAAA
*
27295181 TTAAGGGGATAGAAAGTGGATGGAGAGTGTGTAGCCGAATTGGAGGAGGGATTTT
66 TTAAGGGGATAGAAAGTGGATGGAGAGTGTGTAGCCGAATTGGAGGACGGATTTT
27295236 TGGGATTTGG
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 119 1.00
ACGTcount: A:0.32, C:0.02, G:0.39, T:0.28
Consensus pattern (120 bp):
GAAATTTGAGGAGAGAATATTGGGATTTGGGGAGGTTGTTGTTGTGGAGAGATAATAGTAGAAAA
TTAAGGGGATAGAAAGTGGATGGAGAGTGTGTAGCCGAATTGGAGGACGGATTTT
Found at i:27296207 original size:27 final size:27
Alignment explanation
Indices: 27296177--27296785 Score: 615
Period size: 27 Copynumber: 22.6 Consensus size: 27
27296167 AGACCCCAAA
* * * **
27296177 ATAGGGTAAAATAACTGGAATACCCTT
1 ATAGGGTAAAATGACCGAAATACCCCC
* *
27296204 ATAGGATAAAATGACCGAAATACCCTC
1 ATAGGGTAAAATGACCGAAATACCCCC
*
27296231 AAAGGGTAAAATGACCGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
*
27296258 ATAGGGTAAAATGATCGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * *
27296285 ATAGGGTAAAATAACCAAAATACCTCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * **
27296312 ATAGGGTAGAACGACAAAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * * *
27296339 ATTGGATAGAATGATCGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * *
27296366 ATAGGGTAGAATGATCGAAATACCCTC
1 ATAGGGTAAAATGACCGAAATACCCCC
* *
27296393 ATAGGGTAAAACGACCGAAATACCCCT
1 ATAGGGTAAAATGACCGAAATACCCCC
* * *
27296420 ATAGGGTAGAATGAACGAAATACCCTC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * *
27296447 ATAAGATAAAATGACCAAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* ** * * *
27296474 ATAGGTTAGTATGATCTAAATACACCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* *
27296501 ATAGGGTAGAATGACCGGAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* *
27296528 ATAGGGTAGAATGACTGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * ** **
27296555 AGAAGGTAAAATGACTAAAATACCCTT
1 ATAGGGTAAAATGACCGAAATACCCCC
* * *
27296582 AGAGGGTAAAATGACCAAAATACCCCT
1 ATAGGGTAAAATGACCGAAATACCCCC
* **
27296609 AGAGGGTAAAATGAATGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* *
27296636 ATAGGGTAAAATGATCGAAATAACCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * **
27296663 ACAAGGTAAAATGATTGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * *
27296690 ACAAGGTAAAATGACTGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
*
27296717 ATAGGGTAAAATGATCGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * *
27296744 ACAGAGTAATATGACCGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
*
27296771 ATAAGGTAAAATGAC
1 ATAGGGTAAAATGAC
27296786 TATTATGGCC
Statistics
Matches: 489, Mismatches: 93, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 489 1.00
ACGTcount: A:0.43, C:0.22, G:0.18, T:0.18
Consensus pattern (27 bp):
ATAGGGTAAAATGACCGAAATACCCCC
Found at i:27313509 original size:13 final size:13
Alignment explanation
Indices: 27313491--27313529 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
27313481 ATTAAAGTCC
27313491 AAATATAAAAAAT
1 AAATATAAAAAAT
*
27313504 ATATATAAAAAAT
1 AAATATAAAAAAT
27313517 AAATATAATAAAA
1 AAATATAA-AAAA
27313530 GCCCAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 19 0.83
14 4 0.17
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
AAATATAAAAAAT
Found at i:27314664 original size:22 final size:21
Alignment explanation
Indices: 27314571--27314685 Score: 74
Period size: 22 Copynumber: 5.3 Consensus size: 21
27314561 TAGTATACTT
27314571 TTATTTTAAA-TTATCATAAATA
1 TTATTTTAAACTTATCAT--ATA
27314593 TTA-TTTAAACTTATCATATA
1 TTATTTTAAACTTATCATATA
* * * * *
27314613 TCCTAATTAAAATTTATCATGTGC
1 T--TATTTTAAACTTATCATAT-A
*
27314637 TAATTTTAAACTTATCATATTA
1 TTATTTTAAACTTATCATA-TA
* * *
27314659 TTA-TTTAGATTTATTATATA
1 TTATTTTAAACTTATCATATA
27314679 TTATTTT
1 TTATTTT
27314686 TATATATATA
Statistics
Matches: 72, Mismatches: 14, Indels: 15
0.71 0.14 0.15
Matches are distributed among these distances:
20 9 0.12
21 21 0.29
22 27 0.38
23 14 0.19
24 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.03, T:0.52
Consensus pattern (21 bp):
TTATTTTAAACTTATCATATA
Found at i:27314688 original size:13 final size:12
Alignment explanation
Indices: 27314653--27314704 Score: 50
Period size: 13 Copynumber: 4.1 Consensus size: 12
27314643 TAAACTTATC
* *
27314653 ATATTATTATTT
1 ATATTTTTATAT
*
27314665 AGATTTATTATAT
1 ATATTT-TTATAT
27314678 ATTATTTTTATAT
1 A-TATTTTTATAT
27314691 ATATATTTTATAT
1 ATAT-TTTTATAT
27314704 A
1 A
27314705 AGCTTAATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
12 7 0.21
13 22 0.67
14 4 0.12
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (12 bp):
ATATTTTTATAT
Found at i:27317348 original size:17 final size:15
Alignment explanation
Indices: 27317320--27317353 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
27317310 AGTGGAAAAG
27317320 TTTTTTTTAAAATAA
1 TTTTTTTTAAAATAA
27317335 TTTTTTTATAAAAATAA
1 TTTTTTT-T-AAAATAA
27317352 TT
1 TT
27317354 ATATTTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 1 0.06
17 9 0.53
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTTTTTTAAAATAA
Found at i:27318135 original size:185 final size:185
Alignment explanation
Indices: 27317823--27318377 Score: 957
Period size: 185 Copynumber: 3.0 Consensus size: 185
27317813 CTGCTAACCC
* *
27317823 TTTTTTTTGCCAAATCAATTATTTATCCAAGAAAAATAATTCCAAGTCGTAACATTTTGAATTTA
1 TTTTTTTTTCCAAATCAATTATTTAACCAAGAAAAATAATTCCAAGTCGTAACATTTTGAATTTA
27317888 TGAATTCTAACATGCTAGCATTTGAAATCTCAAAAATTTTAAAATTCTTCGTCCGAACACTCTTA
66 TGAATTCTAACATGCTAGCATTTGAAATCTCAAAAATTTTAAAATTCTTCGTCCGAACACTCTTA
27317953 GGGAATTGTTGTTAGTTATAATTTGTGATTTTTTGCTATTTTTTGTTAAAAGTGG
131 GGGAATTGTTGTTAGTTATAATTTGTGATTTTTTGCTATTTTTTGTTAAAAGTGG
*
27318008 TTTTTTTTTCCAAATCAATTATTTACCCAAGAAAAATAATTCCAAGTCGTAACATTTTGAATTTA
1 TTTTTTTTTCCAAATCAATTATTTAACCAAGAAAAATAATTCCAAGTCGTAACATTTTGAATTTA
27318073 TGAATTCTAACATGCTAGCATTTGAAATCTCAAAAATTTTAAAATTCTTCGTCCGAACACTCTTA
66 TGAATTCTAACATGCTAGCATTTGAAATCTCAAAAATTTTAAAATTCTTCGTCCGAACACTCTTA
27318138 GGGAATTGTTGTTAGTTATAATTTGTGATTTTTTGCTATTTTTTGTTAAAAGTGG
131 GGGAATTGTTGTTAGTTATAATTTGTGATTTTTTGCTATTTTTTGTTAAAAGTGG
27318193 TTTTTTTTTCCAAATCAATTATTTAACCAAGAAAAATAATTCCAAGTCGTAACATTTTGAATTTA
1 TTTTTTTTTCCAAATCAATTATTTAACCAAGAAAAATAATTCCAAGTCGTAACATTTTGAATTTA
* * * **
27318258 TAAATTCTAACATGTTAGCATTTTAAATCTCTGAAATTTTAAAATTCTTCGTCCGAACACACTCT
66 TGAATTCTAACATGCTAGCATTTGAAATCTCAAAAATTTTAAAATTCTTCGTCCG-A-ACACTCT
* * * * * *
27318323 TAAGGAATTATTATTAGCTATAATTTGTGATTTTTTGTTTTTTTTTTGTTAAAAG
129 TAGGGAATTGTTGTTAGTTATAATTTGTGATTTTTTG-CTATTTTTTGTTAAAAG
27318378 ACAATTTCTC
Statistics
Matches: 353, Mismatches: 14, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
185 297 0.84
186 1 0.00
187 40 0.11
188 15 0.04
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.43
Consensus pattern (185 bp):
TTTTTTTTTCCAAATCAATTATTTAACCAAGAAAAATAATTCCAAGTCGTAACATTTTGAATTTA
TGAATTCTAACATGCTAGCATTTGAAATCTCAAAAATTTTAAAATTCTTCGTCCGAACACTCTTA
GGGAATTGTTGTTAGTTATAATTTGTGATTTTTTGCTATTTTTTGTTAAAAGTGG
Found at i:27319979 original size:18 final size:19
Alignment explanation
Indices: 27319946--27319990 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
27319936 AAATTGTTTC
**
27319946 AAATTTTAGATTTTTA-GA
1 AAATTTTAGAACTTTATGA
27319964 AAATTTTAGAACTTTATGA
1 AAATTTTAGAACTTTATGA
*
27319983 ACATTTTA
1 AAATTTTA
27319991 AATAATTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 14 0.61
19 9 0.39
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (19 bp):
AAATTTTAGAACTTTATGA
Found at i:27320024 original size:18 final size:18
Alignment explanation
Indices: 27319993--27320052 Score: 79
Period size: 18 Copynumber: 3.4 Consensus size: 18
27319983 ACATTTTAAA
27319993 TAATTTTATG-TTTTTTT
1 TAATTTTATGATTTTTTT
27320010 TAATTTTA-GAATTTTTTT
1 TAATTTTATG-ATTTTTTT
* *
27320028 TATTTTTATGATTTTTTA
1 TAATTTTATGATTTTTTT
27320046 TAATTTT
1 TAATTTT
27320053 TCAGGAATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
16 1 0.03
17 8 0.22
18 27 0.73
19 1 0.03
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (18 bp):
TAATTTTATGATTTTTTT
Found at i:27326095 original size:72 final size:73
Alignment explanation
Indices: 27325946--27326097 Score: 209
Period size: 72 Copynumber: 2.1 Consensus size: 73
27325936 CAGTAATTGG
* * * * *
27325946 CTTTGTGGCATACTCTGTAAGTGCCTTTGTGGTACATTTTGTAAGTGCCCTTTGTGGTGTACTCT
1 CTTTGTGGCATACTCTGTAAGTGCCTTTGTGGCACACTTTGCAACTGCCCTTTGTGGTATACTCT
27326011 ATAAGTGT
66 ATAAGTGT
* * * *
27326019 -TTTGTGGCATATTCTGTTAGTGCCTTTGTGGCATACTTTGCAACTG-CCTTTGTGGTATATTCT
1 CTTTGTGGCATACTCTGTAAGTGCCTTTGTGGCACACTTTGCAACTGCCCTTTGTGGTATACTCT
27326082 ATAAGTGT
66 ATAAGTGT
27326090 CTTTGTGG
1 CTTTGTGG
27326098 TGTATTATGT
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
71 23 0.33
72 46 0.67
ACGTcount: A:0.16, C:0.16, G:0.24, T:0.44
Consensus pattern (73 bp):
CTTTGTGGCATACTCTGTAAGTGCCTTTGTGGCACACTTTGCAACTGCCCTTTGTGGTATACTCT
ATAAGTGT
Found at i:27326098 original size:24 final size:24
Alignment explanation
Indices: 27325946--27326128 Score: 154
Period size: 24 Copynumber: 7.6 Consensus size: 24
27325936 CAGTAATTGG
* *
27325946 CTTTGTGGCATACTCTGTAAGTGC
1 CTTTGTGGTATATTCTGTAAGTGC
* *
27325970 CTTTGTGGTACATTTTGTAAGTGCC
1 CTTTGTGGTATATTCTGTAAGTG-C
* * *
27325995 CTTTGTGGTGTACTCTATAAGTG-
1 CTTTGTGGTATATTCTGTAAGTGC
* * *
27326018 TTTTGTGGCATATTCTGTTAGTGC
1 CTTTGTGGTATATTCTGTAAGTGC
* * *
27326042 CTTTGTGGCATACTT-TGCAACTGC
1 CTTTGTGGTATA-TTCTGTAAGTGC
* *
27326066 CTTTGTGGTATATTCTATAAGTGT
1 CTTTGTGGTATATTCTGTAAGTGC
* * * *
27326090 CTTTGTGGTGTATTATGTAAATGT
1 CTTTGTGGTATATTCTGTAAGTGC
*
27326114 CTTTGTGGTGTATTC
1 CTTTGTGGTATATTC
27326129 AAGGGTGCCT
Statistics
Matches: 126, Mismatches: 29, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
23 19 0.15
24 86 0.68
25 21 0.17
ACGTcount: A:0.16, C:0.14, G:0.24, T:0.45
Consensus pattern (24 bp):
CTTTGTGGTATATTCTGTAAGTGC
Found at i:27329156 original size:25 final size:24
Alignment explanation
Indices: 27329115--27329165 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
27329105 TAAATTTATT
* *
27329115 TTAAAATATGACTTATTT-GACCAA
1 TTAAAAAATGACATATTTAGA-CAA
27329139 TTAAAAAATCGACATATTTAGACAA
1 TTAAAAAAT-GACATATTTAGACAA
27329164 TT
1 TT
27329166 TAGTCAGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 8 0.35
25 13 0.57
26 2 0.09
ACGTcount: A:0.45, C:0.12, G:0.08, T:0.35
Consensus pattern (24 bp):
TTAAAAAATGACATATTTAGACAA
Found at i:27329737 original size:88 final size:88
Alignment explanation
Indices: 27329579--27329811 Score: 315
Period size: 88 Copynumber: 2.6 Consensus size: 88
27329569 TAAAAAGCTT
*** ** *
27329579 TCAAACTTTTTCAACAAAAAGCAATTAAGATTTTTTTTTTTTTTGCACTCAATTGGGTACTTGAA
1 TCAAACTTTTTCAA-AAAAAGCAATTAAG-CCCTTGCTTTTTTTGCACTCAATTGGGTACTTAAA
*
27329644 TTTTCAAAATACATCAAAAAGACCC
64 CTTTCAAAATACATCAAAAAGACCC
* *
27329669 TCAAACTTTTTCAAAAAAAGCAATTAAGCCCTTGCTTTTTTTACACTCAATTGGGTAGTTAAACT
1 TCAAACTTTTTCAAAAAAAGCAATTAAGCCCTTGCTTTTTTTGCACTCAATTGGGTACTTAAACT
* *
27329734 TTCAAAGTGCATCAAAAAGACCC
66 TTCAAAATACATCAAAAAGACCC
* * *
27329757 TCAAA-ATTTTCAAAAATACCAATTAAGCCCTTGCTTTTTTTGCACTCAATTGGGT
1 TCAAACTTTTTCAAAAAAAGCAATTAAGCCCTTGCTTTTTTTGCACTCAATTGGGT
27329812 GCTTGAACCA
Statistics
Matches: 128, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
87 46 0.36
88 54 0.42
89 14 0.11
90 14 0.11
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36
Consensus pattern (88 bp):
TCAAACTTTTTCAAAAAAAGCAATTAAGCCCTTGCTTTTTTTGCACTCAATTGGGTACTTAAACT
TTCAAAATACATCAAAAAGACCC
Found at i:27329937 original size:29 final size:28
Alignment explanation
Indices: 27329905--27329979 Score: 71
Period size: 29 Copynumber: 2.6 Consensus size: 28
27329895 AATATAAATC
27329905 AATAAAAGTTATAAAAAT-TATTAAATTTT
1 AATAAAA-TTATAAAAATAT-TTAAATTTT
**
27329934 AATAAAAAAATATAAAATATTTAAATTTT
1 AATAAAATTATA-AAAATATTTAAATTTT
* *
27329963 ATTAAAAATTAGAAAAA
1 AAT-AAAATTATAAAAA
27329980 AAATTAGAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
28 3 0.08
29 27 0.73
30 7 0.19
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (28 bp):
AATAAAATTATAAAAATATTTAAATTTT
Found at i:27329951 original size:21 final size:22
Alignment explanation
Indices: 27329917--27329957 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
27329907 TAAAAGTTAT
* *
27329917 AAAAATTATTAAAT-TTTAATA
1 AAAAAATATAAAATATTTAATA
27329938 AAAAAATATAAAATATTTAA
1 AAAAAATATAAAATATTTAA
27329958 ATTTTATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (22 bp):
AAAAAATATAAAATATTTAATA
Found at i:27329981 original size:12 final size:12
Alignment explanation
Indices: 27329966--27329991 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
27329956 AAATTTTATT
27329966 AAAAATTAGAAA
1 AAAAATTAGAAA
27329978 AAAAATTAGAAA
1 AAAAATTAGAAA
27329990 AA
1 AA
27329992 TCCTAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (12 bp):
AAAAATTAGAAA
Found at i:27330142 original size:11 final size:11
Alignment explanation
Indices: 27330128--27330159 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
27330118 ATAAGCATTT
27330128 TATAATTTTTC
1 TATAATTTTTC
27330139 TATAATTTTTC
1 TATAATTTTTC
27330150 TATAACTTTT
1 TATAA-TTTT
27330160 ATTGATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.62
Consensus pattern (11 bp):
TATAATTTTTC
Found at i:27330324 original size:22 final size:22
Alignment explanation
Indices: 27330299--27330346 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
27330289 TTCATATGCA
27330299 TTTTACAATTTTT-TATAATTTCT
1 TTTTACAATTTTTATA-AATTT-T
*
27330322 TTTTACGATTTTTATAAATTTT
1 TTTTACAATTTTTATAAATTTT
27330344 TTT
1 TTT
27330347 CTAATTGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 4 0.17
23 17 0.74
24 2 0.09
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (22 bp):
TTTTACAATTTTTATAAATTTT
Found at i:27330332 original size:23 final size:21
Alignment explanation
Indices: 27330299--27330365 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 21
27330289 TTCATATGCA
*
27330299 TTTTACAATTTTTTATAATTTCT
1 TTTTACAA-TTTTTATAAATT-T
*
27330322 TTTTACGATTTTTATAAATTT
1 TTTTACAATTTTTATAAATTT
*
27330343 TTTT-CTAATTGTTAATAAATTT
1 TTTTAC-AATT-TTTATAAATTT
27330365 T
1 T
27330366 AAATTCTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
20 1 0.03
21 8 0.21
22 22 0.58
23 7 0.18
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.63
Consensus pattern (21 bp):
TTTTACAATTTTTATAAATTT
Found at i:27330744 original size:94 final size:87
Alignment explanation
Indices: 27330535--27330772 Score: 248
Period size: 94 Copynumber: 2.6 Consensus size: 87
27330525 ATCAAATGGA
* * *
27330535 CCTTTTGATGCACTTTGATAGTTCAAGTACTCAATTAAGTGAAAAAAATCAAGGGCTTAATTGTT
1 CCTTTTGATGCA-TTTGAAAGTTCAAGTACTCAATTAAGTAAAAAAAATCAAGAGCTTAATTGTT
*
27330600 TTTTTTTTAAAAATGCTTGAGGGT
65 TTTTTTTTAAAAAT-CTTGAGAGT
* * *
27330624 CCTTTTTATGCATTTGAAAGCTCAAGTACTCAATTGAGTTCAAAAAAAAGT-AAGAGCTTAATTT
1 CCTTTTGATGCATTTGAAAGTTCAAGTACTCAATTAAG-T-AAAAAAAA-TCAAGAGCTTAA-TT
*
27330688 ATTTTATTTTTTTGAAAAAAT-TTGAGAGT
62 -GTTT-TTTTTTT--AAAAATCTTGAGAGT
* *
27330717 CCTTTTGAGGCATTTTGAAAGTTCAAGTACCCAATTAAGCATAAAAAAAAT-AAGAG
1 CCTTTTGATGCA-TTTGAAAGTTCAAGTACTCAATTAAG--TAAAAAAAATCAAGAG
27330773 TTCAATTACT
Statistics
Matches: 125, Mismatches: 14, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
88 23 0.18
89 12 0.10
90 16 0.13
91 3 0.02
92 3 0.02
93 30 0.24
94 31 0.25
95 7 0.06
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.37
Consensus pattern (87 bp):
CCTTTTGATGCATTTGAAAGTTCAAGTACTCAATTAAGTAAAAAAAATCAAGAGCTTAATTGTTT
TTTTTTTAAAAATCTTGAGAGT
Found at i:27341584 original size:25 final size:25
Alignment explanation
Indices: 27341504--27341600 Score: 72
Period size: 25 Copynumber: 3.9 Consensus size: 25
27341494 GACACACCAC
*
27341504 AGCTCTCTTGAGTTTCTCGATATTT
1 AGCTCTCTTGAGCTTCTCGATATTT
* * **
27341529 GGCTCTCATGAGCTT-TCTGAT-TAAC
1 AGCTCTCTTGAGCTTCTC-GATAT-TT
* *
27341554 AACTCTCTTTAGCTTCTCGATATTT
1 AGCTCTCTTGAGCTTCTCGATATTT
** *
27341579 AGCTCTCAAGAGCTTCCCGATA
1 AGCTCTCTTGAGCTTCTCGATA
27341601 AACAACTCAC
Statistics
Matches: 52, Mismatches: 16, Indels: 8
0.68 0.21 0.11
Matches are distributed among these distances:
24 3 0.06
25 46 0.88
26 3 0.06
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (25 bp):
AGCTCTCTTGAGCTTCTCGATATTT
Found at i:27341584 original size:50 final size:50
Alignment explanation
Indices: 27341506--27341619 Score: 147
Period size: 50 Copynumber: 2.3 Consensus size: 50
27341496 CACACCACAG
* * * * * *
27341506 CTCTCTTGAGTTTCTCGATATTTGGCTCTCATGAGCTTTCTGATTAACAA
1 CTCTCTTGAGCTTCTCGATATTTAGCTCTCAAGAGCTTCCCGATAAACAA
*
27341556 CTCTCTTTAGCTTCTCGATATTTAGCTCTCAAGAGCTTCCCGATAAACAA
1 CTCTCTTGAGCTTCTCGATATTTAGCTCTCAAGAGCTTCCCGATAAACAA
* *
27341606 CTCACATGAGCTTC
1 CTCTCTTGAGCTTC
27341620 CTGTTTACAT
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (50 bp):
CTCTCTTGAGCTTCTCGATATTTAGCTCTCAAGAGCTTCCCGATAAACAA
Found at i:27341794 original size:9 final size:9
Alignment explanation
Indices: 27341780--27341805 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
27341770 TTATCGGTAT
27341780 ATACATGAA
1 ATACATGAA
27341789 ATACATGAA
1 ATACATGAA
27341798 ATACATGA
1 ATACATGA
27341806 TACATTGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.54, C:0.12, G:0.12, T:0.23
Consensus pattern (9 bp):
ATACATGAA
Found at i:27352489 original size:26 final size:26
Alignment explanation
Indices: 27352451--27352500 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
27352441 CAGGCCGGCC
** * *
27352451 TATTTTTTTAATAAACACTAAAAATT
1 TATTTTTAAAATAAAAAATAAAAATT
27352477 TATTTTTAAAATAAAAAATAAAAA
1 TATTTTTAAAATAAAAAATAAAAA
27352501 AAGTATTTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (26 bp):
TATTTTTAAAATAAAAAATAAAAATT
Found at i:27354416 original size:25 final size:25
Alignment explanation
Indices: 27354374--27354436 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
27354364 TTAAGTGTTT
* *
27354374 TCAGTATAGT-CTATCTATAGTAGTC
1 TCAGTATA-TACTACCTATAGCAGTC
*
27354399 TCAGTATATACTACCTATAGCAGTT
1 TCAGTATATACTACCTATAGCAGTC
*
27354424 TCAGGATATACTA
1 TCAGTATATACTA
27354437 TCAAAGACTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 1 0.03
25 32 0.97
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (25 bp):
TCAGTATATACTACCTATAGCAGTC
Found at i:27357360 original size:169 final size:169
Alignment explanation
Indices: 27357101--27357411 Score: 561
Period size: 169 Copynumber: 1.8 Consensus size: 169
27357091 TCTTTTTATA
*
27357101 TTCTTTTCCTAATTAGATTTTCATATTGCTCCTTTTCAAATCCTAATAGAATCTGCTCTCCATCT
1 TTCTTTCCCTAATTAGATTTTCATATTGCTCCTTTTCAAATCCTAATAGAATCTGCTCTCCATCT
*
27357166 TTCTATTTATTTTATTTTCTATTTTCTTTCTCTTTTCTTTACACCATATTTTTATCCTAATT-GT
66 TTCTATTTATTTTATTTTCTATTTTCTTTATCTTTTCTTTACACCATATTTTTATCCTAATTAGT
27357230 TGATAATTATTTTGAATAAAATGCATACCTTGCCTATCTC
131 TG-TAATTATTTTGAATAAAATGCATACCTTGCCTATCTC
*
27357270 TTCTTTCCCTAATTAGATTTTCATATTGCTCCTTTTCAAATCCTAATAGAATCTGCTCTCTATCT
1 TTCTTTCCCTAATTAGATTTTCATATTGCTCCTTTTCAAATCCTAATAGAATCTGCTCTCCATCT
* *
27357335 TTCTATTTATTTTATTTTTTATTTTCTTTATCTTTTCTTTACACCATATTTTTATCCTAATTATT
66 TTCTATTTATTTTATTTTCTATTTTCTTTATCTTTTCTTTACACCATATTTTTATCCTAATTAGT
27357400 TGTAATTATTTT
131 TGTAATTATTTT
27357412 TTTTCGAATA
Statistics
Matches: 136, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
169 133 0.98
170 3 0.02
ACGTcount: A:0.23, C:0.19, G:0.05, T:0.54
Consensus pattern (169 bp):
TTCTTTCCCTAATTAGATTTTCATATTGCTCCTTTTCAAATCCTAATAGAATCTGCTCTCCATCT
TTCTATTTATTTTATTTTCTATTTTCTTTATCTTTTCTTTACACCATATTTTTATCCTAATTAGT
TGTAATTATTTTGAATAAAATGCATACCTTGCCTATCTC
Found at i:27358482 original size:22 final size:21
Alignment explanation
Indices: 27358457--27358507 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
27358447 GTTGAATGAC
27358457 TTATCCACACCGTTTGAGTAGT
1 TTATCCACACCG-TTGAGTAGT
*** *
27358479 TTATCTGTATCGTTGAGTAGT
1 TTATCCACACCGTTGAGTAGT
27358500 TTATCCAC
1 TTATCCAC
27358508 TGTGTTAATC
Statistics
Matches: 22, Mismatches: 7, Indels: 1
0.73 0.23 0.03
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.41
Consensus pattern (21 bp):
TTATCCACACCGTTGAGTAGT
Found at i:27359107 original size:18 final size:18
Alignment explanation
Indices: 27359086--27359150 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 18
27359076 CTAGTGTTTT
27359086 ATCCACAACGAGTGGTAC
1 ATCCACAACGAGTGGTAC
* **
27359104 ATCCACAATGATGAGTGGTTT
1 ATCCAC-A--ACGAGTGGTAC
27359125 ATCCACAACGAGTGGTAC
1 ATCCACAACGAGTGGTAC
*
27359143 ATACACAA
1 ATCCACAA
27359151 TGATGAGTGG
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
18 21 0.57
19 1 0.03
20 1 0.03
21 14 0.38
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (18 bp):
ATCCACAACGAGTGGTAC
Found at i:27359121 original size:21 final size:21
Alignment explanation
Indices: 27359095--27359170 Score: 77
Period size: 21 Copynumber: 3.8 Consensus size: 21
27359085 TATCCACAAC
27359095 GAGTGGTACATCCACAATGAT
1 GAGTGGTACATCCACAATGAT
** *
27359116 GAGTGGTTTATCCAC-A--AC
1 GAGTGGTACATCCACAATGAT
*
27359134 GAGTGGTACATACACAATGAT
1 GAGTGGTACATCCACAATGAT
**
27359155 GAGTGGTTTATCCACA
1 GAGTGGTACATCCACA
27359171 GCGTGGTGTG
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
18 13 0.31
19 1 0.02
20 1 0.02
21 27 0.64
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (21 bp):
GAGTGGTACATCCACAATGAT
Found at i:27359137 original size:39 final size:39
Alignment explanation
Indices: 27359078--27359170 Score: 168
Period size: 39 Copynumber: 2.4 Consensus size: 39
27359068 TTTTATTACT
* *
27359078 AGTGTTTTATCCACAACGAGTGGTACATCCACAATGATG
1 AGTGGTTTATCCACAACGAGTGGTACATACACAATGATG
27359117 AGTGGTTTATCCACAACGAGTGGTACATACACAATGATG
1 AGTGGTTTATCCACAACGAGTGGTACATACACAATGATG
27359156 AGTGGTTTATCCACA
1 AGTGGTTTATCCACA
27359171 GCGTGGTGTG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 52 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (39 bp):
AGTGGTTTATCCACAACGAGTGGTACATACACAATGATG
Found at i:27361246 original size:41 final size:40
Alignment explanation
Indices: 27361187--27361316 Score: 206
Period size: 41 Copynumber: 3.1 Consensus size: 40
27361177 TATCTTATGC
27361187 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCAGT
1 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC-GT
* *
27361228 GATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGAT
1 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCG-T
27361269 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGT
1 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC-GT
27361310 GAATCTG
1 G-ATCTG
27361317 TTAAATTAAG
Statistics
Matches: 82, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
40 1 0.01
41 75 0.91
42 6 0.07
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (40 bp):
GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGT
Found at i:27372989 original size:17 final size:18
Alignment explanation
Indices: 27372967--27373007 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
27372957 TTTTGGAATT
*
27372967 ATATTTTTAA-CTTTATA
1 ATATTTTTAATCTTTAAA
*
27372984 ATATTTTTAATTTTTAAA
1 ATATTTTTAATCTTTAAA
27373002 ATATTT
1 ATATTT
27373008 ATTGGATAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (18 bp):
ATATTTTTAATCTTTAAA
Found at i:27375833 original size:18 final size:19
Alignment explanation
Indices: 27375810--27375859 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
27375800 CCATGTGTGT
27375810 CACACGGGA-GTGTAGAGG
1 CACACGGGATGTGTAGAGG
* *
27375828 CACAC-GGATGTGTGGGGG
1 CACACGGGATGTGTAGAGG
27375846 CACACGGGCATGTG
1 CACACGGG-ATGTG
27375860 CTATTGCACG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 3 0.11
18 17 0.63
19 2 0.07
20 5 0.19
ACGTcount: A:0.22, C:0.20, G:0.44, T:0.14
Consensus pattern (19 bp):
CACACGGGATGTGTAGAGG
Found at i:27375946 original size:49 final size:49
Alignment explanation
Indices: 27375846--27375949 Score: 136
Period size: 49 Copynumber: 2.1 Consensus size: 49
27375836 TGTGTGGGGG
* * * *
27375846 CACACGGGCATGTGCTATTGCACGGGTAAGTCAGGTAGGTCGTGCAAGA
1 CACACGGGCATGTGCGATTACACGGGTAAATCAGGTAGGTCGTACAAGA
* * * *
27375895 CACACGGGTATGTGCGATTACACGGGTAAATCAGGTAGGTTGTATAGGA
1 CACACGGGCATGTGCGATTACACGGGTAAATCAGGTAGGTCGTACAAGA
27375944 CACACG
1 CACACG
27375950 AGCTGGTCAT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.27, C:0.19, G:0.33, T:0.21
Consensus pattern (49 bp):
CACACGGGCATGTGCGATTACACGGGTAAATCAGGTAGGTCGTACAAGA
Found at i:27377363 original size:27 final size:27
Alignment explanation
Indices: 27377339--27377390 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
27377329 GTGCAGTATA
*
27377339 TGTGGCAAAGCCACCAGTAATAGTAAT
1 TGTGGCAAAGCCACCAGTAACAGTAAT
* *
27377366 TGTGGCAGAGCCACTAGTAACAGTA
1 TGTGGCAAAGCCACCAGTAACAGTA
27377391 CTTCCTCCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (27 bp):
TGTGGCAAAGCCACCAGTAACAGTAAT
Found at i:27377653 original size:52 final size:52
Alignment explanation
Indices: 27377575--27377718 Score: 209
Period size: 52 Copynumber: 2.8 Consensus size: 52
27377565 CCTTCGGGGG
* *
27377575 TATTTCGATAATTTACCCATCAAGGGTATTTCAGTAATTTACCCATCAGGGT
1 TATTTCGATAATTTACCCATCGAGGGTATTTCAGTAATTTACCCATCAGGGA
* *
27377627 TATTTTGATAATTTACCCATCGAGGGTATCTT-AGTAATTTACCCTTCAGGGA
1 TATTTCGATAATTTACCCATCGAGGGTAT-TTCAGTAATTTACCCATCAGGGA
* * *
27377679 TATTTCGATAATTTTCCCATCGAAGGTATTTCGGTAATTT
1 TATTTCGATAATTTACCCATCGAGGGTATTTCAGTAATTT
27377719 TTATCCTTGT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
51 2 0.02
52 78 0.95
53 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (52 bp):
TATTTCGATAATTTACCCATCGAGGGTATTTCAGTAATTTACCCATCAGGGA
Found at i:27377719 original size:26 final size:25
Alignment explanation
Indices: 27377572--27377718 Score: 163
Period size: 26 Copynumber: 5.7 Consensus size: 25
27377562 GACCCTTCGG
27377572 GGGTATTTCGATAATTTACCCATCAA
1 GGGTATTTCGATAATTTACCCATC-A
27377598 GGGTATTTC-AGTAATTTACCCATCA
1 GGGTATTTCGA-TAATTTACCCATCA
*
27377623 GGGTTATTTTGATAATTTACCCATCGA
1 GGG-TATTTCGATAATTTACCCATC-A
* *
27377650 GGGTATCTTAG-TAATTTACCCTTCA
1 GGGTAT-TTCGATAATTTACCCATCA
*
27377675 GGGATATTTCGATAATTTTCCCATCGA
1 GGG-TATTTCGATAATTTACCCATC-A
* *
27377702 AGGTATTTCGGTAATTT
1 GGGTATTTCGATAATTT
27377719 TTATCCTTGT
Statistics
Matches: 105, Mismatches: 8, Indels: 16
0.81 0.06 0.12
Matches are distributed among these distances:
25 12 0.11
26 82 0.78
27 11 0.10
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.39
Consensus pattern (25 bp):
GGGTATTTCGATAATTTACCCATCA
Done.