Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 126 of 322
Found at i:41181437 original size:31 final size:31
Alignment explanation
Indices: 41181402--41181484 Score: 114
Period size: 31 Copynumber: 2.7 Consensus size: 31
41181392 AATTTATATC
*
41181402 TTATTATATTAAATTATTTAAATATAATTTA
1 TTATTATATTAAATTATTTAAATATAACTTA
* *
41181433 TTATTATATTAAATTATTTAAATCTTACTTA
1 TTATTATATTAAATTATTTAAATATAACTTA
* *
41181464 TTATTGTATTTAATT-TTTAAA
1 TTATTATATTAAATTATTTAAA
41181485 GTATTTTATA
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 6 0.13
31 41 0.87
ACGTcount: A:0.40, C:0.02, G:0.01, T:0.57
Consensus pattern (31 bp):
TTATTATATTAAATTATTTAAATATAACTTA
Found at i:41183616 original size:49 final size:49
Alignment explanation
Indices: 41183544--41183640 Score: 149
Period size: 49 Copynumber: 2.0 Consensus size: 49
41183534 CGTTTGAAGT
* * *
41183544 TAAAATCACACCAAGATGAACAACACTTAATAGTTGACCAATCCAACTC
1 TAAAATCACACCAAGACGAACAACACCTAACAGTTGACCAATCCAACTC
* *
41183593 TAAAATCACACCGAGACGAACAACACCTAACAGTTTACCAATCCAACT
1 TAAAATCACACCAAGACGAACAACACCTAACAGTTGACCAATCCAACT
41183641 TCAATATTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.44, C:0.29, G:0.08, T:0.19
Consensus pattern (49 bp):
TAAAATCACACCAAGACGAACAACACCTAACAGTTGACCAATCCAACTC
Found at i:41191330 original size:26 final size:26
Alignment explanation
Indices: 41191296--41191350 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
41191286 ATAAGAGCCA
* *
41191296 TAATTAGGAAGTTCACAAAGAACTTT
1 TAATCAGGAAGCTCACAAAGAACTTT
** *
41191322 TAATCAGGAAGCTCATGAAGAGCTTT
1 TAATCAGGAAGCTCACAAAGAACTTT
41191348 TAA
1 TAA
41191351 ATGAAAACTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (26 bp):
TAATCAGGAAGCTCACAAAGAACTTT
Found at i:41193045 original size:30 final size:30
Alignment explanation
Indices: 41193004--41193069 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
41192994 CATTTTATAC
*
41193004 TTGACT-TATAACTGTTATTGTATGCAAAT
1 TTGACTATATAACTGTAATTGTATGCAAAT
41193033 TTGACTATATAACTGTAATTGTATGCAAAT
1 TTGACTATATAACTGTAATTGTATGCAAAT
41193063 TTGACTA
1 TTGACTA
41193070 ACGACAAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 6 0.17
30 29 0.83
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (30 bp):
TTGACTATATAACTGTAATTGTATGCAAAT
Found at i:41195374 original size:39 final size:38
Alignment explanation
Indices: 41195331--41195447 Score: 102
Period size: 39 Copynumber: 3.2 Consensus size: 38
41195321 ACAGGTAAGA
41195331 CACACGGGCGTGTCGAATATTGGGCCAGGCAGTGTGATC
1 CACACGGGCGTGTCGAATATT-GGCCAGGCAGTGTGATC
** * * *
41195370 CACACGGGCAAGGCCAAT-TT-G---GGCA-TGTGAGCC
1 CACACGGGCGTGTCGAATATTGGCCAGGCAGTGTGA-TC
* *
41195403 CACACGGGCGTGTCGAATATTGTGCCAGACCGTGTGATC
1 CACACGGGCGTGTCGAATATTG-GCCAGGCAGTGTGATC
41195442 CACACG
1 CACACG
41195448 AGTAAGGCCA
Statistics
Matches: 58, Mismatches: 12, Indels: 16
0.67 0.14 0.19
Matches are distributed among these distances:
32 5 0.09
33 19 0.33
34 2 0.03
36 2 0.03
38 2 0.03
39 23 0.40
40 5 0.09
ACGTcount: A:0.22, C:0.26, G:0.32, T:0.19
Consensus pattern (38 bp):
CACACGGGCGTGTCGAATATTGGCCAGGCAGTGTGATC
Found at i:41195417 original size:72 final size:71
Alignment explanation
Indices: 41195331--41195486 Score: 240
Period size: 72 Copynumber: 2.2 Consensus size: 71
41195321 ACAGGTAAGA
* * *
41195331 CACACGGGCGTGTCGAATATTGGGCCAGGCAGTGTGATCCACACGGGCAAGGCCAATTTGGGCAT
1 CACACGGGCGTGTCGAATATTGGGCCAGACAGTGTGATCCACACGAGCAAGGCCAATCTGGGCAT
41195396 GTGAGCC
66 GTG-GCC
* * *
41195403 CACACGGGCGTGTCGAATATTGTGCCAGACCGTGTGATCCACACGAGTAAGGCCAATCTGGGCAT
1 CACACGGGCGTGTCGAATATTGGGCCAGACAGTGTGATCCACACGAGCAAGGCCAATCTGGGCAT
*
41195468 GTGGGC
66 GTGGCC
41195474 CACACGGGCGTGT
1 CACACGGGCGTGT
41195487 GAGCCCATTT
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
71 15 0.19
72 62 0.81
ACGTcount: A:0.22, C:0.26, G:0.34, T:0.19
Consensus pattern (71 bp):
CACACGGGCGTGTCGAATATTGGGCCAGACAGTGTGATCCACACGAGCAAGGCCAATCTGGGCAT
GTGGCC
Found at i:41197263 original size:28 final size:28
Alignment explanation
Indices: 41197225--41197281 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
41197215 AAAGAAAAAT
41197225 AGAGCAATACCACTCATGAATCAACCAG
1 AGAGCAATACCACTCATGAATCAACCAG
*
41197253 AGAGCAATACCACTTATGAATCAACCAG
1 AGAGCAATACCACTCATGAATCAACCAG
41197281 A
1 A
41197282 CTTATAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.44, C:0.26, G:0.14, T:0.16
Consensus pattern (28 bp):
AGAGCAATACCACTCATGAATCAACCAG
Found at i:41200091 original size:64 final size:64
Alignment explanation
Indices: 41199970--41200094 Score: 153
Period size: 64 Copynumber: 2.0 Consensus size: 64
41199960 GAGAGCCATG
* * * ** *
41199970 TAACAGGACGCTCATAAAGAGCTGCGGTATGTCCATAACACATGCATGATAACTACCGATCATA
1 TAACAGGACGCTCACAAAGAGCTGCAGTATGTCCACAACACATGCAAAACAACTACCGATCATA
* * *
41200034 TAACAGGATGCTCACAAAGAGCTGCAGTATGTCTACAACATATGCAAAACCAA-TACCGATC
1 TAACAGGACGCTCACAAAGAGCTGCAGTATGTCCACAACACATGCAAAA-CAACTACCGATC
41200095 GGGATGCTCG
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
64 49 0.96
65 2 0.04
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.21
Consensus pattern (64 bp):
TAACAGGACGCTCACAAAGAGCTGCAGTATGTCCACAACACATGCAAAACAACTACCGATCATA
Found at i:41200519 original size:37 final size:37
Alignment explanation
Indices: 41200468--41200539 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
41200458 GATCAAAGTA
* *
41200468 AGCTTGCTTTAGCTACTTTCTCTTAGCTAGGGTTTTT
1 AGCTTGCTTGAGCTACTTTCTCTTAGCTAGAGTTTTT
*
41200505 AGCTTGCTTGAGCTACTTTTTCTTAGCTAGAGTTT
1 AGCTTGCTTGAGCTACTTTCTCTTAGCTAGAGTTT
41200540 CAATGGAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.15, C:0.18, G:0.19, T:0.47
Consensus pattern (37 bp):
AGCTTGCTTGAGCTACTTTCTCTTAGCTAGAGTTTTT
Found at i:41205688 original size:28 final size:28
Alignment explanation
Indices: 41205656--41205753 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
41205646 GTGAACATAG
41205656 GCACTGTGTGTGCGAGTTTCGTAACCGA
1 GCACTGTGTGTGCGAGTTTCGTAACCGA
* ****
41205684 GCACTGTGTGTGCGAG-ATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTTC-GTAACCGA
* *
41205712 GGCACTGTGTGTGCGAGTTCCGTAACCAA
1 -GCACTGTGTGTGCGAGTTTCGTAACCGA
41205741 GCACTGTGTGTGC
1 GCACTGTGTGTGC
41205754 AAGATCGGTT
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
27 2 0.04
28 33 0.60
29 19 0.35
30 1 0.02
ACGTcount: A:0.16, C:0.20, G:0.35, T:0.29
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTTCGTAACCGA
Found at i:41205723 original size:57 final size:57
Alignment explanation
Indices: 41205654--41205783 Score: 206
Period size: 57 Copynumber: 2.2 Consensus size: 57
41205644 AAGTGAACAT
* * *
41205654 AGGCACTGTGTGTGCGAGTTTCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
41205711 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
*
41205768 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
41205784 AAATGAGATC
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
57 60 0.90
59 7 0.10
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.28
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
Found at i:41205726 original size:29 final size:29
Alignment explanation
Indices: 41205684--41205783 Score: 94
Period size: 29 Copynumber: 3.4 Consensus size: 29
41205674 TCGTAACCGA
41205684 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * **** *
41205713 GCACTGTGTGTGCGAGTTCCG-TAACCAA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* *
41205741 GCACTGTGTGTGCAAGATCGGTTGTTGGG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
41205770 GCACTAAGTGTGTG
1 GCACT--GTGTGTG
41205784 AAATGAGATC
Statistics
Matches: 52, Mismatches: 16, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
28 20 0.38
29 25 0.48
31 7 0.13
ACGTcount: A:0.17, C:0.17, G:0.37, T:0.29
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:41210881 original size:43 final size:43
Alignment explanation
Indices: 41210830--41210922 Score: 177
Period size: 43 Copynumber: 2.2 Consensus size: 43
41210820 ACAGTTTTTC
41210830 ATTTTATTTAATTTGGTCCCTAATGCATGAAACTAACAATTAA
1 ATTTTATTTAATTTGGTCCCTAATGCATGAAACTAACAATTAA
41210873 ATTTTATTTAATTTGGTCCCTAATGCATGAAACTAACAATTAA
1 ATTTTATTTAATTTGGTCCCTAATGCATGAAACTAACAATTAA
*
41210916 ACTTTAT
1 ATTTTAT
41210923 AATTAAGTCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.41
Consensus pattern (43 bp):
ATTTTATTTAATTTGGTCCCTAATGCATGAAACTAACAATTAA
Found at i:41211908 original size:16 final size:16
Alignment explanation
Indices: 41211884--41211914 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
41211874 AGTAGAGTCA
*
41211884 CATCTATAATGTGTTG
1 CATCCATAATGTGTTG
41211900 CATCCATAATGTGTT
1 CATCCATAATGTGTT
41211915 TCATGTTTCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (16 bp):
CATCCATAATGTGTTG
Found at i:41212781 original size:15 final size:15
Alignment explanation
Indices: 41212753--41212785 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
41212743 AGAAGTCAGG
41212753 ATTCTAAGTATTTTT
1 ATTCTAAGTATTTTT
41212768 ATTC-AAGTATTTTT
1 ATTCTAAGTATTTTT
41212782 ATTC
1 ATTC
41212786 GATTACTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.27, C:0.09, G:0.06, T:0.58
Consensus pattern (15 bp):
ATTCTAAGTATTTTT
Found at i:41212906 original size:18 final size:19
Alignment explanation
Indices: 41212869--41212906 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
41212859 TAAGTAGTTA
* *
41212869 TTGACATTGATTTTTTGTT
1 TTGACAATGATTTTTGGTT
41212888 TTGACAATG-TTTTTGGTT
1 TTGACAATGATTTTTGGTT
41212906 T
1 T
41212907 GGGAAAAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.16, C:0.05, G:0.18, T:0.61
Consensus pattern (19 bp):
TTGACAATGATTTTTGGTT
Found at i:41213994 original size:21 final size:21
Alignment explanation
Indices: 41213959--41214026 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
41213949 CTCAAACCCA
41213959 AGGTAT-AAGAACATAGGTATG
1 AGGTATCAA-AACATAGGTATG
* ** *
41213980 AGTTATCAAAACATAGACAAG
1 AGGTATCAAAACATAGGTATG
* *
41214001 AGGTATCAAAATATAGGTATA
1 AGGTATCAAAACATAGGTATG
41214022 AGGTA
1 AGGTA
41214027 CTAGAACATA
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
21 34 0.94
22 2 0.06
ACGTcount: A:0.47, C:0.07, G:0.22, T:0.24
Consensus pattern (21 bp):
AGGTATCAAAACATAGGTATG
Found at i:41215509 original size:6 final size:6
Alignment explanation
Indices: 41215498--41215527 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
41215488 ATATGACAAA
41215498 AATTAT AATTAT AATTAT AATTAT AATTAT
1 AATTAT AATTAT AATTAT AATTAT AATTAT
41215528 TAGTTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
AATTAT
Found at i:41218886 original size:18 final size:18
Alignment explanation
Indices: 41218843--41218876 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
41218833 AGAAGTGGTG
41218843 ATAATTATACATTTAAAA
1 ATAATTATACATTTAAAA
41218861 ATAATTATA-ATTTAAA
1 ATAATTATACATTTAAA
41218877 CTATAGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (18 bp):
ATAATTATACATTTAAAA
Found at i:41224021 original size:231 final size:231
Alignment explanation
Indices: 41223745--41224218 Score: 630
Period size: 231 Copynumber: 2.1 Consensus size: 231
41223735 TGCTCATACA
* ** ***
41223745 GTTTTACATTAACTTCAAGATCTCTACAACGTTCTTTGAAAGCCTTCTCTTCCCTTTCAAACTCC
1 GTTTTACACTAACTTCAAGATCTCTACAACGTTCTTCCAAAGCCTTCTCTTCCAACTCAAACTCC
* * * * * * *
41223810 ATATAACGCTTCACAAAACTCTTCTCTTTCAACTCAATTTGTTCTTCTTTCAACTCATACTCGCT
66 ATACAACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACT
* * * * * *
41223875 CAAGCACTTCTCCAAAT-ATTTCTCTTTCACCCCAACTTCCTCCAACTTATCTTTTACTGA-TTT
131 CAAGCAATTCTCCAAATCA-TTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTAC-CACTTC
41223938 CTCCATCAACTTAAACT-CTTCACATTGCCGCTCACATT
194 CTCCATCAACTTAAACTCCTT-ACATTGCCGCTCACATT
* * *
41223976 GTTTTACACTAACTTCAAGATCTCTGCGACGTTCTTCCAAAGCCTTTTCTTCCAACTCAAACTCC
1 GTTTTACACTAACTTCAAGATCTCTACAACGTTCTTCCAAAGCCTTCTCTTCCAACTCAAACTCC
* * *
41224041 ATACACCGCTTCTCAAAACTCTTCTCTTTCAACCCAAATTGTTGTTCTCTCAACACATAATCACT
66 ATACAACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACT
* * *
41224106 CAAGCAATTCTCCAAATCATTCTCTTTTAACCTAATTTCCCCCAACTTATCATTTACCACTTCCT
131 CAAGCAATTCTCCAAATCATTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTACCACTTCCT
*
41224171 CCATCAACTTAAACTCCTTACATTGCTGCTCACATT
196 CCATCAACTTAAACTCCTTACATTGCCGCTCACATT
*
41224207 GTTCTACACTAA
1 GTTTTACACTAA
41224219 ATTGGAGATC
Statistics
Matches: 210, Mismatches: 30, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
230 1 0.00
231 205 0.98
232 4 0.02
ACGTcount: A:0.26, C:0.32, G:0.05, T:0.36
Consensus pattern (231 bp):
GTTTTACACTAACTTCAAGATCTCTACAACGTTCTTCCAAAGCCTTCTCTTCCAACTCAAACTCC
ATACAACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACT
CAAGCAATTCTCCAAATCATTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTACCACTTCCT
CCATCAACTTAAACTCCTTACATTGCCGCTCACATT
Found at i:41224266 original size:231 final size:231
Alignment explanation
Indices: 41223749--41224278 Score: 595
Period size: 231 Copynumber: 2.3 Consensus size: 231
41223739 CATACAGTTT
* * * * ** * *** *
41223749 TACATTAACTTCAAGATCTCTACAACGTTCTTTGAAAGCCTTCTCTTCCCTTTCAAACTCCATAT
1 TACACTAAATTCAAGATCTCTACGACGATCTTCCAAAGCCTTTTCTTCCAACTCAAACTCCATAC
* * * * * *
41223814 AACGCTTCACAAAACTCTTCTCTTTCAACTCAATTTGTTCTTCTTTCAACTCATACTCGCTCAAG
66 AACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACTCAAG
* * * * * *
41223879 CACTTCTCCAAATATTTCTCTTTCACCCCAACTTCCTCCAACTTATCTTTTACTGATTTCTCCAT
131 CAATTCTCCAAATATTTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTACTCATTCCTCCAT
*
41223944 CAACTTAAACTCTTCACATTGCCGCTCACATTGTTT
196 CAACTTAAACTCTTCACATTGCCGCTCACATTGTTC
* * *
41223980 TACACTAACTTCAAGATCTCTGCGACGTTCTTCCAAAGCCTTTTCTTCCAACTCAAACTCCATAC
1 TACACTAAATTCAAGATCTCTACGACGATCTTCCAAAGCCTTTTCTTCCAACTCAAACTCCATAC
* * *
41224045 ACCGCTTCTCAAAACTCTTCTCTTTCAACCCAAATTGTTGTTCTCTCAACACATAATCACTCAAG
66 AACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACTCAAG
* * *
41224110 CAATTCTCCAAATCA-TTCTCTTTTAACCTAATTTCCCCCAACTTATCATTTAC-CACTTCCTCC
131 CAATTCTCCAAAT-ATTTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTACTCA-TTCCTCC
*
41224173 ATCAACTTAAACTCCTT-ACATTGCTGCTCACATTGTTC
194 ATCAACTTAAACT-CTTCACATTGCCGCTCACATTGTTC
** * * * * *
41224211 TACACTAAATTGGAGATCTTTACGAC-ATCGTT-CAAGATCCTTCTTC-TCTAACTCAAAATCCC
1 TACACTAAATTCAAGATCTCTACGACGATC-TTCCAA-AGCCTT-TTCTTCCAACTCAAACTCCA
41224273 TACAAC
63 TACAAC
41224279 ACTTGTCAAA
Statistics
Matches: 252, Mismatches: 41, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
230 6 0.02
231 239 0.95
232 7 0.03
ACGTcount: A:0.27, C:0.32, G:0.06, T:0.35
Consensus pattern (231 bp):
TACACTAAATTCAAGATCTCTACGACGATCTTCCAAAGCCTTTTCTTCCAACTCAAACTCCATAC
AACGCTTCACAAAACTCTTCTCTTTCAACCCAAATTGTTCTTCTCTCAACACATAATCACTCAAG
CAATTCTCCAAATATTTCTCTTTCAACCCAACTTCCCCCAACTTATCATTTACTCATTCCTCCAT
CAACTTAAACTCTTCACATTGCCGCTCACATTGTTC
Found at i:41224856 original size:6 final size:6
Alignment explanation
Indices: 41224845--41224875 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
41224835 TTTAAGGGAA
41224845 ACGGAG ACGGAG ACGGAG ACGGAG ACGGAG A
1 ACGGAG ACGGAG ACGGAG ACGGAG ACGGAG A
41224876 TGAGAGAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.35, C:0.16, G:0.48, T:0.00
Consensus pattern (6 bp):
ACGGAG
Found at i:41226271 original size:24 final size:24
Alignment explanation
Indices: 41226244--41226302 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
41226234 TTCAACCTTT
41226244 ATCTTCCTTAACCTTTCACCTCTC
1 ATCTTCCTTAACCTTTCACCTCTC
* * * *
41226268 ATCTTTCTCAACCTTTCATCTTTC
1 ATCTTCCTTAACCTTTCACCTCTC
*
41226292 ATGTTCCTTAA
1 ATCTTCCTTAA
41226303 TTCTTCACAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.19, C:0.34, G:0.02, T:0.46
Consensus pattern (24 bp):
ATCTTCCTTAACCTTTCACCTCTC
Found at i:41240297 original size:40 final size:40
Alignment explanation
Indices: 41240248--41240543 Score: 313
Period size: 40 Copynumber: 7.3 Consensus size: 40
41240238 GGGCTTTTAA
*
41240248 GCCAGTGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGG
1 GCCAATGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGG
* * * * * ***
41240288 GCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAA
1 GCCAATGTCATAA-CCGAACCTAGTTTCGAAGGGCCTTCGG
*
41240329 GCCAGTGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGG
1 GCCAATGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGG
* * * * * ***
41240369 GCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAA
1 GCCAATGTCATAA-CCGAACCTAGTTTCGAAGGGCCTTCGG
*
41240410 GCCAGTGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGG
1 GCCAATGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGG
* * * * * ***
41240450 GCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAA
1 GCCAATGTCATAA-CCGAACCTAGTTTCGAAGGGCCTTCGG
*
41240491 GCCAGTGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGG
1 GCCAATGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGG
41240531 GCCAATGTCATAA
1 GCCAATGTCATAA
41240544 TTCGAGCTTG
Statistics
Matches: 198, Mismatches: 55, Indels: 6
0.76 0.21 0.02
Matches are distributed among these distances:
40 105 0.53
41 93 0.47
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (40 bp):
GCCAATGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGG
Found at i:41240327 original size:81 final size:81
Alignment explanation
Indices: 41240192--41240569 Score: 693
Period size: 81 Copynumber: 4.7 Consensus size: 81
41240182 GAGCTTGGTC
* * * * *
41240192 TCGAAGGGCTTTTGAGCCAGTGTCATAATCCAAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
41240257 ATAACCGAACCTAGTT
66 ATAACCGAACCTAGTT
41240273 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
41240338 ATAACCGAACCTAGTT
66 ATAACCGAACCTAGTT
41240354 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
41240419 ATAACCGAACCTAGTT
66 ATAACCGAACCTAGTT
41240435 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
41240500 ATAACCGAACCTAGTT
66 ATAACCGAACCTAGTT
* *
41240516 TCGAAGGGCCTTCGGGCCAATGTCATAATTCGAGCTTGGTCTTGAAGGGCTTTT
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTT
41240570 TGAGTTCCGA
Statistics
Matches: 290, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
81 290 1.00
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (81 bp):
TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTC
ATAACCGAACCTAGTT
Found at i:41248754 original size:24 final size:24
Alignment explanation
Indices: 41248719--41248771 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
41248709 CCAACACCGT
*
41248719 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTAATCAGCTCCCAAATCC
* *
41248743 TCTCCCTTATCAGCTCCCAAATCT
1 TCTCCCTAATCAGCTCCCAAATCC
41248767 TCTCC
1 TCTCC
41248772 TGACAGCCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.21, C:0.43, G:0.04, T:0.32
Consensus pattern (24 bp):
TCTCCCTAATCAGCTCCCAAATCC
Found at i:41255094 original size:26 final size:27
Alignment explanation
Indices: 41255064--41255129 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
41255054 AGCATGGCTG
*
41255064 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGACAGAGCCA
*
41255090 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGACAGAGCCA
41255117 CCAGAACAGATAA
1 CCAGAACAGATAA
41255130 ATATGGAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
26 13 0.35
27 24 0.65
ACGTcount: A:0.42, C:0.21, G:0.23, T:0.14
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGACAGAGCCA
Found at i:41255145 original size:27 final size:27
Alignment explanation
Indices: 41255064--41255147 Score: 100
Period size: 27 Copynumber: 3.1 Consensus size: 27
41255054 AGCATGGCTG
41255064 CCAGAACAGAT-AATGT-GACAGAGTCA
1 CCAGAACAGATAAATGTGGA-AGAGTCA
* * *
41255090 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAAATGTGGAAGAGTCA
* *
41255117 CCAGAACAGATAAATATGGAATAGTCA
1 CCAGAACAGATAAATGTGGAAGAGTCA
41255144 CCAG
1 CCAG
41255148 GACGCTTCCT
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 11 0.23
27 36 0.75
28 1 0.02
ACGTcount: A:0.42, C:0.20, G:0.23, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAAATGTGGAAGAGTCA
Found at i:41256617 original size:24 final size:24
Alignment explanation
Indices: 41256582--41256658 Score: 100
Period size: 24 Copynumber: 3.2 Consensus size: 24
41256572 CCAACACCAT
*
41256582 TCTCCCTAATCAGCTCCTAAATCA
1 TCTCCCTTATCAGCTCCTAAATCA
* *
41256606 TCTCCCTTATCAGTTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCA
* * *
41256630 TCTCTCTTATCAGCTCCCAAATCT
1 TCTCCCTTATCAGCTCCTAAATCA
41256654 TCTCC
1 TCTCC
41256659 TAACAGCCTT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.22, C:0.39, G:0.04, T:0.35
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCA
Found at i:41262202 original size:43 final size:43
Alignment explanation
Indices: 41262147--41262270 Score: 153
Period size: 43 Copynumber: 2.9 Consensus size: 43
41262137 TACCGAGATG
* * *
41262147 TGATTACATGTAAGACCAAGTCTAGGACATTGGCATTG-T-AT
1 TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAAT
41262188 TGTAATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAAT
1 TG--ATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAAT
* * * *
41262233 TGATTATGTGTAAGACCCTGTCTGGGACAGTGGCATCG
1 TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCG
41262271 ATATGAGATA
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
41 2 0.03
43 65 0.90
44 1 0.01
45 4 0.06
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAAT
Found at i:41280532 original size:28 final size:27
Alignment explanation
Indices: 41280484--41280546 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
41280474 AATCAATCAT
* *
41280484 ATACAGTCTGGGGCCTGAGCCCTTTACAG
1 ATACAGT-TTGGGCCTGAGCCCATT-CAG
* *
41280513 ATTCAGTTTGGGCCTTAGCCCATTCAG
1 ATACAGTTTGGGCCTGAGCCCATTCAG
41280540 ATACAGT
1 ATACAGT
41280547 CTTAGATATA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 9 0.31
28 14 0.48
29 6 0.21
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (27 bp):
ATACAGTTTGGGCCTGAGCCCATTCAG
Found at i:41282349 original size:49 final size:50
Alignment explanation
Indices: 41282271--41282368 Score: 135
Period size: 49 Copynumber: 2.0 Consensus size: 50
41282261 GCTTGTAAAA
* * * *
41282271 CAATATTCTAATAGAAGGAGTGTAGTAAGGTTGAAACACCTAATTCTAAT
1 CAATATTCAAATAGAAGAAGTGTAATAAGGTTGAAAAACCTAATTCTAAT
* *
41282321 CAATA-TCAAATAGATGAAGTGTAATAAGGTTGAAAAACCTTATTCTAA
1 CAATATTCAAATAGAAGAAGTGTAATAAGGTTGAAAAACCTAATTCTAA
41282369 AATAGAATAA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
49 37 0.88
50 5 0.12
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30
Consensus pattern (50 bp):
CAATATTCAAATAGAAGAAGTGTAATAAGGTTGAAAAACCTAATTCTAAT
Found at i:41282431 original size:18 final size:18
Alignment explanation
Indices: 41282405--41282439 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
41282395 TATAGATTTT
*
41282405 AATTTTATTTTATTTTAC
1 AATTGTATTTTATTTTAC
41282423 AATTGTATTTTATTTTA
1 AATTGTATTTTATTTTA
41282440 ATAAGGATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (18 bp):
AATTGTATTTTATTTTAC
Found at i:41294995 original size:6 final size:6
Alignment explanation
Indices: 41294986--41295025 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
41294976 AGTAATCTTA
*
41294986 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTA ATTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTT
41295026 CCCAAAACTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:41298563 original size:13 final size:13
Alignment explanation
Indices: 41298545--41298574 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
41298535 TTCTTATAAA
41298545 CATTTCATAGAAC
1 CATTTCATAGAAC
*
41298558 CATTTCATATAAC
1 CATTTCATAGAAC
41298571 CATT
1 CATT
41298575 CATCATCTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.23, G:0.03, T:0.37
Consensus pattern (13 bp):
CATTTCATAGAAC
Found at i:41298912 original size:183 final size:184
Alignment explanation
Indices: 41298673--41299012 Score: 475
Period size: 183 Copynumber: 1.9 Consensus size: 184
41298663 TGCCATAGTG
* * * * *
41298673 TCTTTCAACTATGGTCTTACTCATTTTCTATCAGGTTGTCATGGTATCTTTCAACCATGGTCTTG
1 TCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
** * * * ** * *
41298738 TTCATTTCATGTTACATTGCCATGGTATCTTTCAACCATGATCTTATTCA-TTCCCGTCATGTTG
66 CACATTTCATATCACATTGCCATGGTATCTTTCAACCACGATCTTACACATTTCACATCATGTTG
*
41298802 CCATGGTATCTTTCAACCATGGTCTTATTCTTTTTATGTCACGTTGCCATGGAA
131 CAATGGTATCTTTCAACCATGGTCTTATTCTTTTTATGTCACGTTGCCATGGAA
** *
41298856 TCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTGTCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
** * *
41298921 CACATTTCATATCATGTTGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCATGTTG
66 CACATTTCATATCACATTGCCATGGTATCTTTCAACCACGATCTTACACATTTCACATCATGTTG
41298986 CAATGGTATCTTTCAACCATGGTCTTA
131 CAATGGTATCTTTCAACCATGGTCTTA
41299013 CACATTTCAT
Statistics
Matches: 134, Mismatches: 22, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
183 97 0.72
184 37 0.28
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (184 bp):
TCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
CACATTTCATATCACATTGCCATGGTATCTTTCAACCACGATCTTACACATTTCACATCATGTTG
CAATGGTATCTTTCAACCATGGTCTTATTCTTTTTATGTCACGTTGCCATGGAA
Found at i:41299021 original size:46 final size:46
Alignment explanation
Indices: 41298658--41299022 Score: 419
Period size: 46 Copynumber: 8.0 Consensus size: 46
41298648 TTATCTTCGA
* * * * *
41298658 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* * *** *
41298704 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* ** * ** ***
41298750 TACATTGCCATGGTATCTTTCAACCATGATCTTATTCA-TTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
** * * *
41298795 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTTATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * *
41298841 CACGTTGCCATGGAATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
41298887 CCTGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
41298933 CATGTTGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
41298979 CATGTTGCAATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
41299023 TTCAGAAAAC
Statistics
Matches: 276, Mismatches: 41, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
45 42 0.15
46 234 0.85
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:41304832 original size:29 final size:29
Alignment explanation
Indices: 41304787--41304849 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
41304777 ATACCGGCAA
41304787 ATGTGTGACACACGGCCTGGTACACGGTC
1 ATGTGTGACACACGGCCTGGTACACGGTC
* *
41304816 GTGTGTGACACATGGCCTGGTACACGGTC
1 ATGTGTGACACACGGCCTGGTACACGGTC
41304845 ATGTG
1 ATGTG
41304850 GTTAGGCCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.19, C:0.24, G:0.33, T:0.24
Consensus pattern (29 bp):
ATGTGTGACACACGGCCTGGTACACGGTC
Found at i:41309601 original size:24 final size:24
Alignment explanation
Indices: 41309566--41309627 Score: 99
Period size: 24 Copynumber: 2.6 Consensus size: 24
41309556 AGGACCTAAG
*
41309566 TATGTATCTGCATTTGATTATGAA
1 TATGTATTTGCATTTGATTATGAA
*
41309590 TATGTATTTGCATCTGATTATGAA
1 TATGTATTTGCATTTGATTATGAA
41309614 TATGTATTTG-ATTT
1 TATGTATTTGCATTT
41309628 TGAAAATTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
23 3 0.09
24 32 0.91
ACGTcount: A:0.27, C:0.06, G:0.16, T:0.50
Consensus pattern (24 bp):
TATGTATTTGCATTTGATTATGAA
Found at i:41314450 original size:17 final size:17
Alignment explanation
Indices: 41314428--41314460 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
41314418 ATCTGACAAA
*
41314428 GCCCGATCAATAATAAT
1 GCCCGATAAATAATAAT
41314445 GCCCGATAAATAATAA
1 GCCCGATAAATAATAA
41314461 ATGATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.21, G:0.12, T:0.21
Consensus pattern (17 bp):
GCCCGATAAATAATAAT
Found at i:41323874 original size:18 final size:18
Alignment explanation
Indices: 41323851--41323891 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
41323841 TCTTAGCAAC
41323851 CAAACCCAGAATTTTATG
1 CAAACCCAGAATTTTATG
41323869 CAAACCCAGAATTTTATG
1 CAAACCCAGAATTTTATG
41323887 CAAAC
1 CAAAC
41323892 AGGCTTACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.41, C:0.24, G:0.10, T:0.24
Consensus pattern (18 bp):
CAAACCCAGAATTTTATG
Found at i:41326236 original size:16 final size:17
Alignment explanation
Indices: 41326209--41326240 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
41326199 TACTTTCGTA
41326209 AAATATTTTCAAAACAC
1 AAATATTTTCAAAACAC
41326226 AAATA-TTTCAAAACA
1 AAATATTTTCAAAACA
41326241 TTGTGGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (17 bp):
AAATATTTTCAAAACAC
Found at i:41330637 original size:69 final size:69
Alignment explanation
Indices: 41330522--41330850 Score: 376
Period size: 69 Copynumber: 4.8 Consensus size: 69
41330512 AACCTTTATG
* * * * *
41330522 TCATATTAAGGCTCGCAGGATAAAAATCGTAGCCTCCAACACAGTTAGCTAGAGCAAAGCTCCCA
1 TCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTCCAACATAGTTAGCGAGAGCAAAGCTCCCA
41330587 ACTA
66 ACTA
* * * *
41330591 TCATATAAAGGCTCGCAAGATAAAAACCACAGCCTCCAACATAGTTAGTGAGAGCAAAGC-CCTA
1 TCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTCCAACATAGTTAGCGAGAGCAAAGCTCCCA
** *
41330655 GTTG
66 ACTA
* * *
41330659 TCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTTCAACACAGTTAGCGAGAGCTAAGCTCCCA
1 TCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTCCAACATAGTTAGCGAGAGCAAAGCTCCCA
*
41330724 ACTG
66 ACTA
* **** *
41330728 TCATATTAAGGCTCGC-AGTTTAAAAATAATAGCCTCCAACATAGTTAGCGAGATCAAAGCTCCC
1 TCATATTAAGGCTCGCAAG-ATAAAAACCGCAGCCTCCAACATAGTTAGCGAGAGCAAAGCTCCC
*
41330792 AAGTGA
65 AACT-A
* * * *
41330798 -CATATTAAGGCTCGTAGGATAAAAACCGCAACCTCAAACATAGTTAGCGAGAG
1 TCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTCCAACATAGTTAGCGAGAG
41330851 TTGGAAACTC
Statistics
Matches: 214, Mismatches: 42, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
68 60 0.28
69 153 0.71
70 1 0.00
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (69 bp):
TCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTCCAACATAGTTAGCGAGAGCAAAGCTCCCA
ACTA
Found at i:41330766 original size:137 final size:137
Alignment explanation
Indices: 41330520--41330850 Score: 434
Period size: 137 Copynumber: 2.4 Consensus size: 137
41330510 ACAACCTTTA
* * * *
41330520 TGTCATATTAAGGCTCGCAGGATAAAAATCGTAGCCTCCAACACAGTTAGCTAGAGCAAAGCTCC
1 TGTCATATTAAGGCTCGCAGGATAAAAACCGCAGCCTTCAACACAGTTAGCGAGAGCAAAGCTCC
* *
41330585 CAACTATCATATAAAGGCTCGCAAGATAAAAACCACAGCCTCCAACATAGTTAGTGAGAGCAAAG
66 CAACTATCATATAAAGGCTCGCAAGATAAAAACAACAGCCTCCAACATAGTTAGCGAGAGCAAAG
*
41330650 -CCCTAG
131 CCCCAAG
* *
41330656 TTGTCATATTAAGGCTCGCAAGATAAAAACCGCAGCCTTCAACACAGTTAGCGAGAGCTAAGCTC
1 -TGTCATATTAAGGCTCGCAGGATAAAAACCGCAGCCTTCAACACAGTTAGCGAGAGCAAAGCTC
* * * * * *
41330721 CCAACTGTCATATTAAGGCTCGC-AGTTTAAAAATAATAGCCTCCAACATAGTTAGCGAGATCAA
65 CCAACTATCATATAAAGGCTCGCAAG-ATAAAAACAACAGCCTCCAACATAGTTAGCGAGAGCAA
41330785 AGCTCCCAAG
129 AGC-CCCAAG
* * * *
41330795 TGACATATTAAGGCTCGTAGGATAAAAACCGCAACC-TCAAACATAGTTAGCGAGAG
1 TGTCATATTAAGGCTCGCAGGATAAAAACCGCAGCCTTC-AACACAGTTAGCGAGAG
41330851 TTGGAAACTC
Statistics
Matches: 170, Mismatches: 20, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
136 2 0.01
137 115 0.68
138 48 0.28
139 5 0.03
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.21
Consensus pattern (137 bp):
TGTCATATTAAGGCTCGCAGGATAAAAACCGCAGCCTTCAACACAGTTAGCGAGAGCAAAGCTCC
CAACTATCATATAAAGGCTCGCAAGATAAAAACAACAGCCTCCAACATAGTTAGCGAGAGCAAAG
CCCCAAG
Found at i:41330952 original size:58 final size:58
Alignment explanation
Indices: 41330860--41331070 Score: 221
Period size: 58 Copynumber: 3.7 Consensus size: 58
41330850 GTTGGAAACT
* * * * * *
41330860 CCCAGCTGTGTTATCTTTCAAAATTTTATCAAGTATTAAGTAGCTCGCAAATTCACATC
1 CCCAGCTG-GTTATCCTTCAAAATTTTTTCAAGTATAAAATAGCTCGCAGATCCACATC
* *
41330919 CCCAGCTGGTTATCCTTCAAAATTTTTTGAAGTATAAAATAGCTCGCGGATCCACATC
1 CCCAGCTGGTTATCCTTCAAAATTTTTTCAAGTATAAAATAGCTCGCAGATCCACATC
* * * * * * *
41330977 CCTAGCTAGTTATCTTTCAAAATTCTATT-AGGTATGAAATAGCTTGCAGATCCACATC
1 CCCAGCTGGTTATCCTTCAAAATT-TTTTCAAGTATAAAATAGCTCGCAGATCCACATC
* * *
41331035 CCCAGTTTGTTAT-CTTC-AAATTTTCTCAAGTATAAA
1 CCCAGCTGGTTATCCTTCAAAATTTTTTCAAGTATAAA
41331071 GCTACTCGTG
Statistics
Matches: 126, Mismatches: 24, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
55 2 0.02
56 12 0.10
57 3 0.02
58 98 0.78
59 11 0.09
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (58 bp):
CCCAGCTGGTTATCCTTCAAAATTTTTTCAAGTATAAAATAGCTCGCAGATCCACATC
Found at i:41331651 original size:13 final size:13
Alignment explanation
Indices: 41331633--41331659 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
41331623 GGGATACGCT
41331633 CGTGTCCTCAGCC
1 CGTGTCCTCAGCC
41331646 CGTGTCCTCAGCC
1 CGTGTCCTCAGCC
41331659 C
1 C
41331660 ATAATAGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.48, G:0.22, T:0.22
Consensus pattern (13 bp):
CGTGTCCTCAGCC
Found at i:41344233 original size:20 final size:21
Alignment explanation
Indices: 41344208--41344246 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
41344198 CTCTTCAAAC
41344208 AGGGC-ACACGCCCGTGTGAA
1 AGGGCAACACGCCCGTGTGAA
41344228 AGGGCAACACGCCCGTGTG
1 AGGGCAACACGCCCGTGTG
41344247 GTCATTATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.31, G:0.36, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGAA
Found at i:41346376 original size:43 final size:41
Alignment explanation
Indices: 41346229--41346385 Score: 111
Period size: 43 Copynumber: 3.7 Consensus size: 41
41346219 TGTGTTCTCG
* * * *
41346229 TGTAAGACCACATTTGGGACGTTGGCATCAATATGTGATT-T
1 TGTAAGACCATATCTGGGACGTTGGCATCGA-ATGTGATTCA
* * * * * *
41346270 TGAGTAAGACCATGTCTGAGACATCGTCATCGTAATTGTGATTCG
1 T--GTAAGACCATATCTGGGACGTTGGCATCG-AA-TGTGATTCA
*
41346315 TGTAAGACCCTATCTGGGACAG-TGGCATCGACATGTGATTACA
1 TGTAAGACCATATCTGGGAC-GTTGGCATCGA-ATGTGATT-CA
* *
41346358 TGTAAGACCATGTTTGGGACGTTGGCAT
1 TGTAAGACCATATCTGGGACGTTGGCAT
41346386 TGTACGATAT
Statistics
Matches: 88, Mismatches: 19, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
41 1 0.01
42 9 0.10
43 69 0.78
44 8 0.09
45 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGACGTTGGCATCGAATGTGATTCA
Found at i:41349229 original size:94 final size:94
Alignment explanation
Indices: 41349077--41349247 Score: 233
Period size: 94 Copynumber: 1.8 Consensus size: 94
41349067 TAAGAAGCCA
* *
41349077 ACGCCATGTCCCAGACATGGTCTTACACCGGCTTTCATATAGCGAGGTCGATGCCATGTCCCAGA
1 ACGCCATGTCCCAGACATGGTCTTACACCAGCTTTCATATAGCGAGGCCGATGCCATGTCCCAGA
41349142 CAAGTCTTACACTAACACACAACAAGCTG
66 CAAGTCTTACACTAACACACAACAAGCTG
* *
41349171 ACGCCATGTCCCA-A-ATAGGTCTTACACTAGCTTGT-ATATCGCGAGAGGCCGATG-CATGTCC
1 ACGCCATGTCCCAGACAT-GGTCTTACACCAGCTT-TCATATAGC--GAGGCCGATGCCATGTCC
*
41349232 CAGACATGTCTTACAC
62 CAGACAAGTCTTACAC
41349248 GAGCTCTCAT
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
92 2 0.03
93 21 0.31
94 36 0.53
95 9 0.13
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (94 bp):
ACGCCATGTCCCAGACATGGTCTTACACCAGCTTTCATATAGCGAGGCCGATGCCATGTCCCAGA
CAAGTCTTACACTAACACACAACAAGCTG
Found at i:41351000 original size:8 final size:8
Alignment explanation
Indices: 41350975--41351016 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
41350965 CTTATACAAA
41350975 TTAAATAAT
1 TTAAAT-AT
*
41350984 TTATA-AT
1 TTAAATAT
*
41350991 TTATATAT
1 TTAAATAT
41350999 TTAAATAT
1 TTAAATAT
41351007 TTAAATAT
1 TTAAATAT
41351015 TT
1 TT
41351017 TGTAGATATG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
7 7 0.23
8 19 0.63
9 4 0.13
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (8 bp):
TTAAATAT
Found at i:41351082 original size:22 final size:22
Alignment explanation
Indices: 41351037--41351083 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
41351027 TTTTTATTTT
*
41351037 AAAAAATAAATCATAATAAGTA
1 AAAAAATAAATAATAATAAGTA
*
41351059 AAAAAATAAATTAATATTAA-TA
1 AAAAAATAAA-TAATAATAAGTA
41351081 AAA
1 AAA
41351084 TGTTATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (22 bp):
AAAAAATAAATAATAATAAGTA
Found at i:41351195 original size:18 final size:16
Alignment explanation
Indices: 41351161--41351207 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
41351151 ATATTTTATT
*
41351161 TAATAAATTTAATTTG
1 TAATAAATTAAATTTG
41351177 TAAATAAATTAATATTTG
1 T-AATAAATTAA-ATTTG
41351195 TAATAAAGTTAAA
1 TAATAAA-TTAAA
41351208 ATAGTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 1 0.04
17 16 0.59
18 10 0.37
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (16 bp):
TAATAAATTAAATTTG
Found at i:41357635 original size:20 final size:19
Alignment explanation
Indices: 41357585--41357637 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
41357575 TAACCTAGAA
*
41357585 AAAAAACATATAA-TTTAT
1 AAAAAATATATAATTTTAT
* *
41357603 AAAAAATTTATAATTTTTT
1 AAAAAATATATAATTTTAT
41357622 AAAAAATATGATAATT
1 AAAAAATAT-ATAATT
41357638 AAAAATATTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 11 0.38
19 12 0.41
20 6 0.21
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
AAAAAATATATAATTTTAT
Found at i:41357688 original size:20 final size:22
Alignment explanation
Indices: 41357659--41357711 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
41357649 AATTAATAAT
*
41357659 ATTATTAAAAACGT-AAA-AAA
1 ATTATAAAAAACGTAAAAGAAA
**
41357679 ATTATAAAAATTGTAAAAGAAA
1 ATTATAAAAAACGTAAAAGAAA
*
41357701 ATTAAAAAAAA
1 ATTATAAAAAA
41357712 GTTTAAAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 11 0.42
21 3 0.12
22 12 0.46
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.25
Consensus pattern (22 bp):
ATTATAAAAAACGTAAAAGAAA
Found at i:41357851 original size:23 final size:23
Alignment explanation
Indices: 41357825--41357880 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
41357815 ATTATTTTGA
*
41357825 ATTTTTTAAATTTATA-AT-GAT
1 ATTTTTTAAATTTATATATAAAT
*
41357846 ATATTTTACAATTTTATATATAAAT
1 ATTTTTTA-AA-TTTATATATAAAT
41357871 ATTTTTTAAA
1 ATTTTTTAAA
41357881 ATTTTTTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 7 0.25
22 2 0.07
23 6 0.21
24 4 0.14
25 9 0.32
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (23 bp):
ATTTTTTAAATTTATATATAAAT
Found at i:41359825 original size:18 final size:18
Alignment explanation
Indices: 41359802--41359863 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
41359792 ACATCTTGAT
41359802 CTGAAGCCCGAAGTCTAA
1 CTGAAGCCCGAAGTCTAA
**
41359820 CTGAAGCACATAAGTGCTAAA
1 CTGAAGC-CCGAAGT-CT-AA
* *
41359841 CGGAAGCCCGAAGGCTAA
1 CTGAAGCCCGAAGTCTAA
41359859 CTGAA
1 CTGAA
41359864 ACTCGTATGA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 13 0.38
19 7 0.21
20 6 0.18
21 8 0.24
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (18 bp):
CTGAAGCCCGAAGTCTAA
Found at i:41362342 original size:287 final size:288
Alignment explanation
Indices: 41361825--41362356 Score: 976
Period size: 287 Copynumber: 1.9 Consensus size: 288
41361815 NNNNNNNNNN
*
41361825 TTACATCCTTTTGATTCGGGCTTTAATAGCCACTGAAAAAGAAAAAAGAAAAATATTTTTACAAT
1 TTACATCCTTTTGATTCGGGATTTAATAGCCACTGAAAAAGAAAAAAGAAAAATATTTTTACAAT
* *
41361890 CTTTGATTTATTTCCTGCCATATTTGTTTCGTTTCTGTCGTTTTCTTTCCATTTTTGTAGGTGAT
66 CTTTGATTTATTTCCTGCCATATTTGTTTCGTTTCTATCGTTTTCTTTCCATTTTTGCAGGTGAT
41361955 TGAGGAGAGTAGACCACCGGCGTTGATTCGGCCGTAGACCACGGCATGGTTCGAAGCCCGGGAAT
131 TGAGGAGAGTAGACCACCGGCGTTGATTCGGCCGTAGACCACGGCATGGTTCGAAGCCCGGGAAT
* *
41362020 TACGGTGGTGAGTGCTCTGGCCTCTGATTAGTGCACCAATCACGGATCCTTATTGAATCTTTGTG
196 CACAGTGGTGAGTGCTCTGGCCTCTGATTAGTGCACCAATCACGGATCCTTATTGAATCTTTGTG
41362085 TGTGTTTTCAAAACTAAAAAAATGTCAT
261 TGTGTTTTCAAAACTAAAAAAATGTCAT
*
41362113 TTACATCCTTTTGATTCGGGATTTTATAGCCACTGAAAAAGAAAAAAGAAAAATATTTTTACAAT
1 TTACATCCTTTTGATTCGGGATTTAATAGCCACTGAAAAAGAAAAAAGAAAAATATTTTTACAAT
41362178 CTTTGATTTA-TTCCTGCCATATTTGTTTCGTTTCTATCGTTTTCTTTCCATTTTTGCAGGTGAT
66 CTTTGATTTATTTCCTGCCATATTTGTTTCGTTTCTATCGTTTTCTTTCCATTTTTGCAGGTGAT
*
41362242 TGAGGAGAGTAGACCACCGGCGTTGATTCGGCCGTAGACCACGGCATGGTTCGAAGCTCGGGAAT
131 TGAGGAGAGTAGACCACCGGCGTTGATTCGGCCGTAGACCACGGCATGGTTCGAAGCCCGGGAAT
* *
41362307 CACAGTGGTGAGTGCTTTGGCCTCTGATTAGTGCACCGATCACGGATCCT
196 CACAGTGGTGAGTGCTCTGGCCTCTGATTAGTGCACCAATCACGGATCCT
41362357 GAAATCACAA
Statistics
Matches: 235, Mismatches: 9, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
287 162 0.69
288 73 0.31
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.35
Consensus pattern (288 bp):
TTACATCCTTTTGATTCGGGATTTAATAGCCACTGAAAAAGAAAAAAGAAAAATATTTTTACAAT
CTTTGATTTATTTCCTGCCATATTTGTTTCGTTTCTATCGTTTTCTTTCCATTTTTGCAGGTGAT
TGAGGAGAGTAGACCACCGGCGTTGATTCGGCCGTAGACCACGGCATGGTTCGAAGCCCGGGAAT
CACAGTGGTGAGTGCTCTGGCCTCTGATTAGTGCACCAATCACGGATCCTTATTGAATCTTTGTG
TGTGTTTTCAAAACTAAAAAAATGTCAT
Found at i:41363236 original size:44 final size:44
Alignment explanation
Indices: 41362929--41363321 Score: 259
Period size: 44 Copynumber: 8.9 Consensus size: 44
41362919 ATCTATTATT
* * *
41362929 TTCGATCTGCTCTCT-ACCAATATAGAGACGCCAGATCTG-TCATC
1 TTCGATCTGCTCTCTGA-CAATACAGAGACGCCAAATCAGCT-ATC
* * * *
41362973 TTCAATCGGCTCTCTGACAATACGGAGACGCCAAATCTG-TCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCAGCT-ATC
* * * *
41363017 TTTGATCTGCTCTCTGACCATATAGAGATGCCAAAT---C-ATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCAGCTATC
* * ** * * *
41363057 TTAGATTTGCT-TCAAACGTAA-ACACGTGAAAGCCAAATCAACTATGTC
1 TTCGATCTGCTCTCTGAC--AATACA-GAG-ACGCCAAATCAGCTA--TC
* * * *
41363105 TTCGATCTGCTCCCTGTCGAATACAGAGATGTCAAATCTA-CTATC
1 TTCGATCTGCTCTCTGAC-AATACAGAGACGCCAAATC-AGCTATC
* *
41363150 TTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCAGCTATC
*
41363194 TTCGATCTGCTCTCTGATAATACAGAGACGCCAAATCAGCTATGTC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCAGCTA--TC
* ** * * *
41363240 TTCGATCTGCTCCCTTTCGAATACAGAGATGCCAAATCTG-TTTC
1 TTCGATCTGCTCTCTGAC-AATACAGAGACGCCAAATCAGCTATC
* * * * *
41363284 TTTGATTTGTTCTTTGACAATACAGAGATGCCAAATCA
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCA
41363322 TCTTGGATCT
Statistics
Matches: 276, Mismatches: 54, Indels: 39
0.75 0.15 0.11
Matches are distributed among these distances:
39 4 0.01
40 14 0.05
41 3 0.01
42 8 0.03
43 19 0.07
44 140 0.51
45 19 0.07
46 18 0.07
47 30 0.11
48 16 0.06
49 5 0.02
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (44 bp):
TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCAGCTATC
Found at i:41367527 original size:45 final size:45
Alignment explanation
Indices: 41367476--41367565 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
41367466 TCTTGATAGG
* *
41367476 ACCATGCGAAGATATCCTTGAACTCACGTAGCAACTCAATCAGTC
1 ACCATGCGAAAATATCCTTGAACTCACGTAACAACTCAATCAGTC
*
41367521 ACCATGCGAAAATATCCTTGAACTCATGTAACAACTCAATCAGTC
1 ACCATGCGAAAATATCCTTGAACTCACGTAACAACTCAATCAGTC
41367566 TTTGCCTTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.36, C:0.28, G:0.13, T:0.23
Consensus pattern (45 bp):
ACCATGCGAAAATATCCTTGAACTCACGTAACAACTCAATCAGTC
Found at i:41373389 original size:31 final size:32
Alignment explanation
Indices: 41373348--41373410 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
41373338 TTATTTATAA
*
41373348 AAGATATTTAT-TAATTAAATA-ATTATATTAT
1 AAGATATTTATGTAA-TAAATATATTAAATTAT
*
41373379 AAGATTTTTATGTAATAAATATATTAAATTAT
1 AAGATATTTATGTAATAAATATATTAAATTAT
41373411 GACAAGTGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 16 0.57
32 12 0.43
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (32 bp):
AAGATATTTATGTAATAAATATATTAAATTAT
Found at i:41375188 original size:45 final size:45
Alignment explanation
Indices: 41375138--41375248 Score: 161
Period size: 45 Copynumber: 2.5 Consensus size: 45
41375128 CGACTACTAT
41375138 TACTGTTACTGTTACTGTTACCGATTC-GACACTTTGTGTGTCGAA
1 TACTGTTACTGTTACTGTTACCGATTCAG-CACTTTGTGTGTCGAA
* * *
41375183 TACTGTTACTGTTACCGTTATCGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGTGTCGAA
* *
41375228 TACTATTAATGTTACTGTTAC
1 TACTGTTACTGTTACTGTTAC
41375249 TATTCCGGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 57 0.98
46 1 0.02
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGTGTCGAA
Found at i:41375241 original size:51 final size:50
Alignment explanation
Indices: 41375123--41375248 Score: 138
Period size: 45 Copynumber: 2.6 Consensus size: 50
41375113 CAGGCACCTA
* * *
41375123 TGTGCCGACTACTATTACTGTTACTGTTACTGTTACCGATTCGACACTTTG
1 TGTGTCGAATACTATTA-TGTTACTGTTACCGTTACCGATTCGACACTTTG
*
41375174 TGTGTCGAATAC-----TGTTACTGTTACCGTTATCGATTC-AGCACTTTG
1 TGTGTCGAATACTATTATGTTACTGTTACCGTTACCGATTCGA-CACTTTG
*
41375219 TGTGTTGAATACTATTAATGTTACTGTTAC
1 TGTGTCGAATACTATT-ATGTTACTGTTAC
41375249 TATTCCGGAT
Statistics
Matches: 63, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
44 1 0.02
45 40 0.63
51 22 0.35
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.41
Consensus pattern (50 bp):
TGTGTCGAATACTATTATGTTACTGTTACCGTTACCGATTCGACACTTTG
Found at i:41375449 original size:18 final size:18
Alignment explanation
Indices: 41375428--41375613 Score: 110
Period size: 18 Copynumber: 10.3 Consensus size: 18
41375418 TAACTGATTA
*
41375428 TTACTAAATAATTAACTG
1 TTACTGAATAATTAACTG
* * *
41375446 TTACCGGATAATTGACTG
1 TTACTGAATAATTAACTG
*
41375464 TTACTGGAT-ATTAGACTG
1 TTACTGAATAATTA-ACTG
* * *
41375482 TTACTGAATAACTAAATA
1 TTACTGAATAATTAACTG
* * *
41375500 TTACTAAATAATTGA-TCA
1 TTACTGAATAATTAACT-G
* * *
41375518 TTACTGAATAACTGATTG
1 TTACTGAATAATTAACTG
* *
41375536 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTAACTG
*
41375554 TTACTGAATAACTTAATTG
1 TTACTGAATAA-TTAACTG
* * *
41375573 TTACTGAATACTTGA-TT
1 TTACTGAATAATTAACTG
* *
41375590 TTATTGAATAATTGACTG
1 TTACTGAATAATTAACTG
41375608 TTACTG
1 TTACTG
41375614 GATGACCGAT
Statistics
Matches: 132, Mismatches: 28, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
17 20 0.15
18 92 0.70
19 20 0.15
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (18 bp):
TTACTGAATAATTAACTG
Found at i:41375558 original size:54 final size:54
Alignment explanation
Indices: 41375500--41375612 Score: 124
Period size: 54 Copynumber: 2.1 Consensus size: 54
41375490 TAACTAAATA
*
41375500 TTACTAAATAA-TTGATCATTACTGAATAAC-TGATTGTCACTGAATGAA-TGACTG
1 TTACTAAATAACTTAATCATTACTGAAT-ACTTGATT-TCACTGAAT-AATTGACTG
* ** * *
41375554 TTACTGAATAACTTAATTGTTACTGAATACTTGATTTTATTGAATAATTGACTG
1 TTACTAAATAACTTAATCATTACTGAATACTTGATTTCACTGAATAATTGACTG
41375608 TTACT
1 TTACT
41375613 GGATGACCGA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
53 2 0.04
54 30 0.60
55 18 0.36
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.41
Consensus pattern (54 bp):
TTACTAAATAACTTAATCATTACTGAATACTTGATTTCACTGAATAATTGACTG
Found at i:41375598 original size:72 final size:72
Alignment explanation
Indices: 41375416--41375618 Score: 178
Period size: 72 Copynumber: 2.8 Consensus size: 72
41375406 AAAGGTATAA
* * * * * * * * * *
41375416 AATAACTGATTATTACTAAATAATT-AACTGTTACCGGATAATTGACTGTTACTGGAT-ATTAGA
1 AATAACTAAATATTACTAAATAATTGATC-ATTACTGAATAACTGACTGTCACTGAATGAAT-GA
41375479 CTGTTACTG
64 CTGTTACTG
*
41375488 AATAACTAAATATTACTAAATAATTGATCATTACTGAATAACTGATTGTCACTGAATGAATGACT
1 AATAACTAAATATTACTAAATAATTGATCATTACTGAATAACTGACTGTCACTGAATGAATGACT
41375553 GTTACTG
66 GTTACTG
* * * * * * * * *
41375560 AATAACTTAATTGTTACTGAATACTTGAT-TTTATTGAATAATTGACTGTTACTGGATGA
1 AATAAC-TAAATATTACTAAATAATTGATCATTACTGAATAACTGACTGTCACTGAATGA
41375619 CCGATCAATT
Statistics
Matches: 107, Mismatches: 21, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
72 85 0.79
73 22 0.21
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.38
Consensus pattern (72 bp):
AATAACTAAATATTACTAAATAATTGATCATTACTGAATAACTGACTGTCACTGAATGAATGACT
GTTACTG
Found at i:41375613 original size:54 final size:55
Alignment explanation
Indices: 41375518--41375698 Score: 154
Period size: 54 Copynumber: 3.2 Consensus size: 55
41375508 TAATTGATCA
* * *
41375518 TTACTGAATAACTGATTGTCACTGAATGAA-TGACTGTTACTGAATAACTTAATTG
1 TTACTGAATAACTGATTATTATTGAAT-AATTGACTGTTACTGAATAACTTAATTG
* * *
41375573 TTACTGAAT-ACTTGATT-TTATTGAATAATTGACTGTTACTGGATGACCGATCAATTG
1 TTACTGAATAAC-TGATTATTATTGAATAATTGACTGTTACTGAAT-AAC--TTAATTG
* * * * *
41375630 ATCGATACTGAATAACTGGTTATTATTGAATAATTGATTGTTACCGAATAAC-TGACTG
1 -T---TACTGAATAACTGATTATTATTGAATAATTGACTGTTACTGAATAACTTAATTG
41375688 TTACTGAATAA
1 TTACTGAATAA
41375699 ATAATTGTTC
Statistics
Matches: 102, Mismatches: 13, Indels: 23
0.74 0.09 0.17
Matches are distributed among these distances:
53 2 0.02
54 33 0.32
55 16 0.16
57 7 0.07
58 4 0.04
61 14 0.14
62 26 0.25
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.38
Consensus pattern (55 bp):
TTACTGAATAACTGATTATTATTGAATAATTGACTGTTACTGAATAACTTAATTG
Found at i:41375707 original size:18 final size:18
Alignment explanation
Indices: 41375480--41375711 Score: 90
Period size: 18 Copynumber: 12.5 Consensus size: 18
41375470 GATATTAGAC
* * *
41375480 TGTTACTGAATAACTAAA
1 TGTTACTGAATAAATGAT
* * *
41375498 TATTACTAAATAATTGAT
1 TGTTACTGAATAAATGAT
** *
41375516 CATTACTGAATAACTGAT
1 TGTTACTGAATAAATGAT
* * *
41375534 TGTCACTGAATGAATGAC
1 TGTTACTGAATAAATGAT
* *
41375552 TGTTACTGAATAACTTAAT
1 TGTTACTGAATAA-ATGAT
**
41375571 TGTTACTGAATACTTGAT
1 TGTTACTGAATAAATGAT
* * *
41375589 T-TTATTGAATAATTGAC
1 TGTTACTGAATAAATGAT
*
41375606 TGTTACTGGATGACCGATCAATTGAT
1 TGTTAC----TGA---AT-AAATGAT
* * * *
41375632 CGATACTGAATAACTGGT
1 TGTTACTGAATAAATGAT
* * *
41375650 TATTATTGAATAATTGAT
1 TGTTACTGAATAAATGAT
* * *
41375668 TGTTACCGAATAACTGAC
1 TGTTACTGAATAAATGAT
*
41375686 TGTTACTGAATAAATAAT
1 TGTTACTGAATAAATGAT
41375704 TGTT-CTGA
1 TGTTACTGA
41375712 TTGTTAATGA
Statistics
Matches: 159, Mismatches: 45, Indels: 21
0.71 0.20 0.09
Matches are distributed among these distances:
17 18 0.11
18 107 0.67
19 16 0.10
22 6 0.04
25 2 0.01
26 10 0.06
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (18 bp):
TGTTACTGAATAAATGAT
Found at i:41378652 original size:5 final size:5
Alignment explanation
Indices: 41378640--41378743 Score: 62
Period size: 5 Copynumber: 21.0 Consensus size: 5
41378630 TTACTTTACC
*
41378640 ATAT- ATATA ATATA ATAATA ATAT- -TATA ATATAA TATATA ATAAA
1 ATATA ATATA ATATA AT-ATA ATATA ATATA ATAT-A -ATATA ATATA
* *
41378685 ATATA ATA-A CATATA AT-TT ATA-A ATA-A ATAATA ATA-A AAATA ATATA
1 ATATA ATATA -ATATA ATATA ATATA ATATA AT-ATA ATATA ATATA ATATA
41378732 ATGGATA ATATA
1 AT--ATA ATATA
41378744 TAAATAAAAA
Statistics
Matches: 80, Mismatches: 6, Indels: 27
0.71 0.05 0.24
Matches are distributed among these distances:
3 3 0.04
4 17 0.21
5 40 0.50
6 11 0.14
7 9 0.11
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.37
Consensus pattern (5 bp):
ATATA
Found at i:41378659 original size:3 final size:3
Alignment explanation
Indices: 41378646--41378733 Score: 53
Period size: 3 Copynumber: 29.7 Consensus size: 3
41378636 TACCATATAT
*
41378646 ATA AT- ATA ATA ATA AT- ATT ATA AT- ATA ATA TATA ATA A-A AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
* * *
41378687 ATA ATA ACA TATA ATTT ATAA ATAA ATA ATA ATA AAA ATA AT- ATA AT
1 ATA ATA ATA -ATA A-TA AT-A AT-A ATA ATA ATA ATA ATA ATA ATA AT
41378734 GGATAATATA
Statistics
Matches: 68, Mismatches: 7, Indels: 20
0.72 0.07 0.21
Matches are distributed among these distances:
2 12 0.18
3 43 0.63
4 13 0.19
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:41378740 original size:39 final size:38
Alignment explanation
Indices: 41378644--41378756 Score: 124
Period size: 39 Copynumber: 2.9 Consensus size: 38
41378634 TTTACCATAT
41378644 ATATAATATAATAATAATATTAT-AATATAATATATAATAAA
1 ATATAATATAAT-ATAAT-TTATAAATA-AATA-ATAATAAA
41378685 ATATAATA-ACATATAATTTATAAATAAATAATAATAAA
1 ATATAATATA-ATATAATTTATAAATAAATAATAATAAA
* *
41378723 A-ATAATATAATGGATAATATATAAATAAAAAATA
1 ATATAATATAAT--ATAATTTATAAATAAATAATA
41378757 TATATCATTT
Statistics
Matches: 65, Mismatches: 2, Indels: 12
0.82 0.03 0.15
Matches are distributed among these distances:
37 8 0.12
38 10 0.15
39 27 0.42
40 10 0.15
41 10 0.15
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.35
Consensus pattern (38 bp):
ATATAATATAATATAATTTATAAATAAATAATAATAAA
Found at i:41378833 original size:19 final size:21
Alignment explanation
Indices: 41378642--41378835 Score: 58
Period size: 20 Copynumber: 9.5 Consensus size: 21
41378632 ACTTTACCAT
* *
41378642 ATATATAATATAATA-ATAAT
1 ATATATAAAATAATATATAAA
*
41378662 AT-TATAATATAATATATAATA
1 ATATATAAAATAATATATAA-A
* * *
41378683 A-A-ATATAATAACATATAAT
1 ATATATAAAATAATATATAAA
* *
41378702 TTATAAATAAATAATA-ATAAAA
1 ATATATA-AAATAATATAT-AAA
*
41378724 ATAATATAATGGATAATATAT-AA
1 AT-ATATAA--AATAATATATAAA
*
41378747 ATA-A-AAAAT-ATATAT-CA
1 ATATATAAAATAATATATAAA
* * * *
41378764 TTTTATACAACTAACACGTATAAA
1 ATATATA-AAATAATA--TATAAA
41378788 A-AT-T-AAATAATATATAAA
1 ATATATAAAATAATATATAAA
* *
41378806 GTATTTAAAATAA-AT-TAAA
1 ATATATAAAATAATATATAAA
41378825 ATATATAAAAT
1 ATATATAAAAT
41378836 TAAAAATAAT
Statistics
Matches: 126, Mismatches: 27, Indels: 43
0.64 0.14 0.22
Matches are distributed among these distances:
17 8 0.06
18 9 0.07
19 28 0.22
20 34 0.27
21 14 0.11
22 12 0.10
23 12 0.10
24 7 0.06
25 2 0.02
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (21 bp):
ATATATAAAATAATATATAAA
Found at i:41378841 original size:26 final size:29
Alignment explanation
Indices: 41378787--41378844 Score: 77
Period size: 26 Copynumber: 2.1 Consensus size: 29
41378777 ACACGTATAA
*
41378787 AAATTAAATAATATATAAAGTATTTAAAAT
1 AAATTAAATAATATATAAAG-ATTAAAAAT
41378817 AAATT-AA-AATATATAAA-ATTAAAAAT
1 AAATTAAATAATATATAAAGATTAAAAAT
41378843 AA
1 AA
41378845 TTGAAAACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 10 0.37
28 10 0.37
29 2 0.07
30 5 0.19
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (29 bp):
AAATTAAATAATATATAAAGATTAAAAAT
Found at i:41387409 original size:11 final size:11
Alignment explanation
Indices: 41387393--41387418 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
41387383 CCTTGGAAAA
41387393 ATAACAATTAT
1 ATAACAATTAT
41387404 ATAACAATTAT
1 ATAACAATTAT
41387415 ATAA
1 ATAA
41387419 TATTACATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.35
Consensus pattern (11 bp):
ATAACAATTAT
Found at i:41394239 original size:42 final size:43
Alignment explanation
Indices: 41394128--41394246 Score: 136
Period size: 44 Copynumber: 2.8 Consensus size: 43
41394118 TGATATGTGT
* *
41394128 TTTCATGTAAGACCAC-GTCTGGGACGTTGGCATCAACTTATGA
1 TTTCGTGTAAGACC-CTGTCTGGGACATTGGCATCAACTTATGA
* *
41394171 TTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTA-TT-TGA
1 TTT-CGTGTAAGACCCTGTCTGGGACATTGGCATC-AACTTATGA
* *
41394214 TTTCGTGTAAGACCCTGTCTAGGACAGTGGCAT
1 TTTCGTGTAAGACCCTGTCTGGGACATTGGCAT
41394247 TGATATTCAA
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
42 27 0.41
43 9 0.14
44 29 0.44
45 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (43 bp):
TTTCGTGTAAGACCCTGTCTGGGACATTGGCATCAACTTATGA
Found at i:41394277 original size:43 final size:42
Alignment explanation
Indices: 41394172--41394280 Score: 121
Period size: 42 Copynumber: 2.6 Consensus size: 42
41394162 AACTTATGAT
* * * **
41394172 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGA
1 TTACGTGTAAGACCACGTCTAGGACAGTGGCATCGTATTCAA
* *
41394214 TTTCGTGTAAGACC-CTGTCTAGGACAGTGGCATTGATATTCAA
1 TTACGTGTAAGACCAC-GTCTAGGACAGTGGCATCG-TATTCAA
*
41394257 TTACATGTAAGACCACGTCTAGGA
1 TTACGTGTAAGACCACGTCTAGGA
41394281 TGTTGGTATT
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 29 0.53
43 25 0.45
44 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCACGTCTAGGACAGTGGCATCGTATTCAA
Found at i:41401376 original size:134 final size:134
Alignment explanation
Indices: 41401136--41401403 Score: 536
Period size: 134 Copynumber: 2.0 Consensus size: 134
41401126 TTGGTAAATG
41401136 GCTTAATAAAGTAATTAAAATAAAACAAAGGCATGAAATAAACCATTTTTATGTTCATCCATGAC
1 GCTTAATAAAGTAATTAAAATAAAACAAAGGCATGAAATAAACCATTTTTATGTTCATCCATGAC
41401201 CGAATATCAAAGAAAAAGAAAAGAGAAAAACAAGCTAGGGTTCGACACTTTGATTTGGTGATTTA
66 CGAATATCAAAGAAAAAGAAAAGAGAAAAACAAGCTAGGGTTCGACACTTTGATTTGGTGATTTA
41401266 GCTA
131 GCTA
41401270 GCTTAATAAAGTAATTAAAATAAAACAAAGGCATGAAATAAACCATTTTTATGTTCATCCATGAC
1 GCTTAATAAAGTAATTAAAATAAAACAAAGGCATGAAATAAACCATTTTTATGTTCATCCATGAC
41401335 CGAATATCAAAGAAAAAGAAAAGAGAAAAACAAGCTAGGGTTCGACACTTTGATTTGGTGATTTA
66 CGAATATCAAAGAAAAAGAAAAGAGAAAAACAAGCTAGGGTTCGACACTTTGATTTGGTGATTTA
41401400 GCTA
131 GCTA
41401404 TGTATTTTGT
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
134 134 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (134 bp):
GCTTAATAAAGTAATTAAAATAAAACAAAGGCATGAAATAAACCATTTTTATGTTCATCCATGAC
CGAATATCAAAGAAAAAGAAAAGAGAAAAACAAGCTAGGGTTCGACACTTTGATTTGGTGATTTA
GCTA
Found at i:41404479 original size:28 final size:28
Alignment explanation
Indices: 41404439--41404495 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
41404429 AAGATGAGAA
41404439 TAAACTTGACATAAAGGCTCCAGTGGAG
1 TAAACTTGACATAAAGGCTCCAGTGGAG
41404467 TAAACTTGACATAAAGGCTCCAGTGGAG
1 TAAACTTGACATAAAGGCTCCAGTGGAG
41404495 T
1 T
41404496 CAGCACCACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (28 bp):
TAAACTTGACATAAAGGCTCCAGTGGAG
Found at i:41410546 original size:20 final size:20
Alignment explanation
Indices: 41410517--41410557 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
41410507 ACTTTCTAGG
41410517 TTGCTATGAAAATGAACCGC
1 TTGCTATGAAAATGAACCGC
*
41410537 TTGCTGTGAAAATGAACCGC
1 TTGCTATGAAAATGAACCGC
41410557 T
1 T
41410558 CATCGGTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (20 bp):
TTGCTATGAAAATGAACCGC
Found at i:41419752 original size:93 final size:93
Alignment explanation
Indices: 41419640--41419811 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
41419630 CGCCCATAAG
*
41419640 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
41419704 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
41419733 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
41419798 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
41419812 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:41419806 original size:46 final size:46
Alignment explanation
Indices: 41419633--41419808 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
41419623 TGTAACCCGC
* *
41419633 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
41419679 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
41419729 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
41419772 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
41419809 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:41426865 original size:46 final size:46
Alignment explanation
Indices: 41426721--41426939 Score: 246
Period size: 46 Copynumber: 4.7 Consensus size: 46
41426711 ATTGTAGGCT
* * * *
41426721 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGAGAGCC
** * * *
41426767 AGTGTAAGACCATGTCTGGGACATGGCATCAACATCGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGAGAGCC
*
41426815 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-AGAGCC
* *
41426861 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGAGAGCC
41426907 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
41426940 ACCTTACCCA
Statistics
Matches: 149, Mismatches: 15, Indels: 15
0.83 0.08 0.08
Matches are distributed among these distances:
45 3 0.02
46 72 0.48
47 43 0.29
48 30 0.20
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGAGCC
Found at i:41433889 original size:16 final size:18
Alignment explanation
Indices: 41433853--41433890 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
41433843 ATCATTATTT
*
41433853 AAATAAAATACAGTGGTA
1 AAATAAAATACAATGGTA
41433871 AAATAAAATA-AAT-GTA
1 AAATAAAATACAATGGTA
41433887 AAAT
1 AAAT
41433891 CCATATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 2 0.11
18 10 0.53
ACGTcount: A:0.63, C:0.03, G:0.11, T:0.24
Consensus pattern (18 bp):
AAATAAAATACAATGGTA
Found at i:41437089 original size:13 final size:13
Alignment explanation
Indices: 41437073--41437099 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
41437063 GTACAAGAGG
41437073 TTTGATTCCTTTA
1 TTTGATTCCTTTA
41437086 TTTGATTCCTTTA
1 TTTGATTCCTTTA
41437099 T
1 T
41437100 GATGTCTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (13 bp):
TTTGATTCCTTTA
Found at i:41441951 original size:19 final size:19
Alignment explanation
Indices: 41441905--41441957 Score: 54
Period size: 21 Copynumber: 2.7 Consensus size: 19
41441895 TTGAAATCAA
**
41441905 ATATATTTGTAATATTATAT
1 ATATATTTAAAAT-TTATAT
41441925 ATGATATTATAAAATTTATAT
1 AT-ATATT-TAAAATTTATAT
41441946 AT-TATTTAAAAT
1 ATATATTTAAAAT
41441958 GCCTTTCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 6 0.21
19 4 0.14
20 2 0.07
21 13 0.45
22 4 0.14
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (19 bp):
ATATATTTAAAATTTATAT
Found at i:41442605 original size:12 final size:12
Alignment explanation
Indices: 41442588--41442620 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
41442578 TTATAAATTG
41442588 ATAATATAT-AGT
1 ATAATATATCA-T
41442600 ATAATATATCAT
1 ATAATATATCAT
41442612 ATAATATAT
1 ATAATATAT
41442621 GGTTTCTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 19 0.95
13 1 0.05
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (12 bp):
ATAATATATCAT
Found at i:41445087 original size:17 final size:18
Alignment explanation
Indices: 41445050--41445098 Score: 73
Period size: 17 Copynumber: 2.8 Consensus size: 18
41445040 TAAAAATATT
41445050 TTTTAAAATTTTTATACA
1 TTTTAAAATTTTTATACA
* *
41445068 TTTTAATATTTTT-TATA
1 TTTTAAAATTTTTATACA
41445085 TTTTAAAATTTTTA
1 TTTTAAAATTTTTA
41445099 AATTAAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 15 0.56
18 12 0.44
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTAAAATTTTTATACA
Found at i:41452288 original size:17 final size:16
Alignment explanation
Indices: 41452268--41452305 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
41452258 AATATTTTTA
*
41452268 AATAATTTTTATTATT
1 AATAATTTTTACTATT
41452284 CAATAATTTTTACTATT
1 -AATAATTTTTACTATT
41452301 AATAA
1 AATAA
41452306 ATATTTGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (16 bp):
AATAATTTTTACTATT
Found at i:41452829 original size:13 final size:13
Alignment explanation
Indices: 41452811--41452835 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41452801 GTTTTTTTTA
41452811 TTATAAAAAAATC
1 TTATAAAAAAATC
41452824 TTATAAAAAAAT
1 TTATAAAAAAAT
41452836 AATGAATTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
TTATAAAAAAATC
Found at i:41454149 original size:23 final size:24
Alignment explanation
Indices: 41454121--41454173 Score: 79
Period size: 26 Copynumber: 2.1 Consensus size: 24
41454111 CCTCTTAGTG
*
41454121 AAAAAAATAATTTAATATATTATTT
1 AAAAAACTAATTTAATATATT-TTT
41454146 AAAAAACTTAATTTAATATATTTTT
1 AAAAAAC-TAATTTAATATATTTTT
41454171 AAA
1 AAA
41454174 GACATATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 12 0.46
26 14 0.54
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (24 bp):
AAAAAACTAATTTAATATATTTTT
Found at i:41454898 original size:16 final size:16
Alignment explanation
Indices: 41454877--41454909 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
41454867 AAGTTGCACA
41454877 GGAGGTGCAACAAATG
1 GGAGGTGCAACAAATG
*
41454893 GGAGGTGCAACATATG
1 GGAGGTGCAACAAATG
41454909 G
1 G
41454910 ATTAGGAGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.12, G:0.39, T:0.15
Consensus pattern (16 bp):
GGAGGTGCAACAAATG
Found at i:41458232 original size:185 final size:185
Alignment explanation
Indices: 41457917--41458286 Score: 713
Period size: 185 Copynumber: 2.0 Consensus size: 185
41457907 CATGGTAAGA
41457917 GTTATGTTTTGATTTTATTATAATTTGTAATTCGGCACTTGTTCCATGATATAATATTTGGAGTT
1 GTTATGTTTTGATTTTATTATAATTTGTAATTCGGCACTTGTTCCATGATATAATATTTGGAGTT
*
41457982 GCATGTATATTAATTAATGAAATTCGGATATGCAAGGTAATGAGTGAGTAAAATGTTCTATGATG
66 GCATGTATATTAATTAATGAAATTCGGATATGCAAGGTAATGAGTGAGTAAAATGTTCCATGATG
41458047 GTTTTAGTCTATTATTTAGGAATAAATGCAATTGTTGATTGTAGCCTTGAAATCT
131 GTTTTAGTCTATTATTTAGGAATAAATGCAATTGTTGATTGTAGCCTTGAAATCT
41458102 GTTATGTTTTGATTTTATTATAATTTGTAATTCGGCACTTGTTCCATGATATAATATTTGGAGTT
1 GTTATGTTTTGATTTTATTATAATTTGTAATTCGGCACTTGTTCCATGATATAATATTTGGAGTT
* *
41458167 GTATGTATATTAATTAATGAAATTCGGATATGCAAGGTAATGAGTTAGTAAAATGTTCCATGATG
66 GCATGTATATTAATTAATGAAATTCGGATATGCAAGGTAATGAGTGAGTAAAATGTTCCATGATG
41458232 GTTTTAGTCTATTATTTAGGAATAAATGCAATTGTTGATTGTAGCCTTGAAATCT
131 GTTTTAGTCTATTATTTAGGAATAAATGCAATTGTTGATTGTAGCCTTGAAATCT
41458287 ATGTTAAGAA
Statistics
Matches: 182, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
185 182 1.00
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (185 bp):
GTTATGTTTTGATTTTATTATAATTTGTAATTCGGCACTTGTTCCATGATATAATATTTGGAGTT
GCATGTATATTAATTAATGAAATTCGGATATGCAAGGTAATGAGTGAGTAAAATGTTCCATGATG
GTTTTAGTCTATTATTTAGGAATAAATGCAATTGTTGATTGTAGCCTTGAAATCT
Found at i:41459061 original size:45 final size:45
Alignment explanation
Indices: 41458997--41459158 Score: 263
Period size: 45 Copynumber: 3.6 Consensus size: 45
41458987 TATCACACAG
*
41458997 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCAGGTGAAA
*
41459042 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCAGGTGAAA
* *
41459087 TACTACTCGGGCCTTTGAGCCTAGCAGGCTATAATGCAGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCAGGTGAAA
* *
41459132 TACTATTCAGG-CTTCGAGCCTAGCAGG
1 TACTATTCGGGCCTTTGAGCCTAGCAGG
41459159 AAAAATGCTG
Statistics
Matches: 110, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
44 15 0.14
45 95 0.86
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCAGGTGAAA
Found at i:41473173 original size:12 final size:10
Alignment explanation
Indices: 41473135--41473184 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
41473125 TGTAATTCTG
*
41473135 TCAAAAATAA
1 TCAAAATTAA
*
41473145 CCAAAATTAA
1 TCAAAATTAA
41473155 TCAAAATTAA
1 TCAAAATTAA
41473165 CTACAAAATTAA
1 -T-CAAAATTAA
*
41473177 TTAAAATT
1 TCAAAATT
41473185 CATAATGTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
10 23 0.68
11 2 0.06
12 9 0.26
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (10 bp):
TCAAAATTAA
Found at i:41474300 original size:8 final size:8
Alignment explanation
Indices: 41474289--41474333 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
41474279 TCAATTTGCA
*
41474289 TAAAATAT
1 TAAAAAAT
*
41474297 TAAAATAT
1 TAAAAAAT
*
41474305 TAATAAATT
1 TAA-AAAAT
41474314 TAAAAAAT
1 TAAAAAAT
41474322 TAAAAAAT
1 TAAAAAAT
41474330 TAAA
1 TAAA
41474334 TAAAAATGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
8 27 0.82
9 6 0.18
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (8 bp):
TAAAAAAT
Found at i:41474317 original size:25 final size:26
Alignment explanation
Indices: 41474289--41474337 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
41474279 TCAATTTGCA
* *
41474289 TAAAATATTAAAATATT-AATAAATT
1 TAAAAAATTAAAAAATTAAATAAATT
41474314 TAAAAAATTAAAAAATTAAATAAA
1 TAAAAAATTAAAAAATTAAATAAA
41474338 AATGAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (26 bp):
TAAAAAATTAAAAAATTAAATAAATT
Found at i:41474318 original size:17 final size:17
Alignment explanation
Indices: 41474290--41474330 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
41474280 CAATTTGCAT
*
41474290 AAAATATTAAAATATTAA
1 AAAAT-TTAAAAAATTAA
*
41474308 TAAATTTAAAAAATTAA
1 AAAATTTAAAAAATTAA
41474325 AAAATT
1 AAAATT
41474331 AAATAAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAAATTTAAAAAATTAA
Found at i:41475131 original size:15 final size:15
Alignment explanation
Indices: 41475113--41475142 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
41475103 AAATATAATT
41475113 TTATATTATTTATTA
1 TTATATTATTTATTA
*
41475128 TTATCTTATTTATTA
1 TTATATTATTTATTA
41475143 AAAATTAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATATTATTTATTA
Found at i:41477664 original size:43 final size:43
Alignment explanation
Indices: 41477576--41477678 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 43
41477566 TACCAAGATG
* * *
41477576 TGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTA
1 TGATTACGTATAAGACCATGTCTAGGACATTGGCATCGTATTA
* *
41477619 TGATTACGTCTAAGACCATGTCT-GAGACATTGGCGTCGT-TATA
1 TGATTACGTATAAGACCATGTCTAG-GACATTGGCATCGTAT-TA
*
41477662 TGATTTCGTATAAGACC
1 TGATTACGTATAAGACC
41477679 CTGTTTGAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 2 0.04
43 50 0.96
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (43 bp):
TGATTACGTATAAGACCATGTCTAGGACATTGGCATCGTATTA
Found at i:41484187 original size:40 final size:40
Alignment explanation
Indices: 41484089--41484351 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
41484079 TCCTCGTTCA
* * * * *
41484089 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
41484128 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
41484168 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
41484208 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
41484248 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
41484288 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
41484328 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
41484352 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:41489598 original size:19 final size:19
Alignment explanation
Indices: 41489574--41489611 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
41489564 GGAACACATC
41489574 ATGAATCCAGTCCAACTCT
1 ATGAATCCAGTCCAACTCT
41489593 ATGAATCCAGTCCAACTCT
1 ATGAATCCAGTCCAACTCT
41489612 GGAGGTAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.32, G:0.11, T:0.26
Consensus pattern (19 bp):
ATGAATCCAGTCCAACTCT
Found at i:41500708 original size:27 final size:27
Alignment explanation
Indices: 41500669--41500846 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
41500659 ATTTTGAGTC
* * * *
41500669 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
41500696 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
41500723 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
41500751 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
41500778 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
41500805 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
41500832 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
41500847 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:41500808 original size:82 final size:81
Alignment explanation
Indices: 41500690--41500845 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
41500680 TGCTATATAA
* *
41500690 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
41500755 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
41500772 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
41500836 CACTTAGTGC
65 CACTTAGTGC
41500846 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:41511016 original size:14 final size:14
Alignment explanation
Indices: 41510997--41511027 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
41510987 CCAAACCTTA
41510997 AATAATTCTACCTC
1 AATAATTCTACCTC
41511011 AATAATTCTACCTC
1 AATAATTCTACCTC
41511025 AAT
1 AAT
41511028 GTTGGTGATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.39, C:0.26, G:0.00, T:0.35
Consensus pattern (14 bp):
AATAATTCTACCTC
Found at i:41511677 original size:35 final size:35
Alignment explanation
Indices: 41511638--41511707 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
41511628 ATAATATCAA
41511638 AATTTGTCAAAAGAAAATACAATACCAAGTAACTC
1 AATTTGTCAAAAGAAAATACAATACCAAGTAACTC
41511673 AATTTGTCAAAAGAAAATACAATACCAAGTAACTC
1 AATTTGTCAAAAGAAAATACAATACCAAGTAACTC
41511708 TTTCTCTGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.51, C:0.17, G:0.09, T:0.23
Consensus pattern (35 bp):
AATTTGTCAAAAGAAAATACAATACCAAGTAACTC
Found at i:41514547 original size:42 final size:42
Alignment explanation
Indices: 41514437--41514556 Score: 152
Period size: 43 Copynumber: 2.8 Consensus size: 42
41514427 TATCATACCA
* *
41514437 ATGCCGTATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
* * * *
41514479 ATACCAATAGCCCAGCTATGGCCTTACATG-AAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGTAA-TCTCATATCG
*
41514522 ATGCCATATCCCAGATATGGTCTTACACGTAATCT
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCT
41514557 TAGTAACCCT
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 29 0.45
43 35 0.55
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
Found at i:41524883 original size:12 final size:12
Alignment explanation
Indices: 41524870--41524910 Score: 73
Period size: 12 Copynumber: 3.4 Consensus size: 12
41524860 ATAAGTAAAT
*
41524870 TATTTGAAAAAT
1 TATTTGAAAAAA
41524882 TATTTGAAAAAA
1 TATTTGAAAAAA
41524894 TATTTGAAAAAA
1 TATTTGAAAAAA
41524906 TATTT
1 TATTT
41524911 ATGTAATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.41
Consensus pattern (12 bp):
TATTTGAAAAAA
Found at i:41528951 original size:47 final size:47
Alignment explanation
Indices: 41528888--41529997 Score: 2148
Period size: 47 Copynumber: 23.6 Consensus size: 47
41528878 CCCTTCGGGA
* * *
41528888 CTTATCACATTTATACACTTTCATATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
41528935 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
41528982 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529029 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529076 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529123 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529170 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529217 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529264 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529311 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529358 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529405 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529452 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529499 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529546 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529593 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529640 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529687 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529734 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529781 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529828 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
41529875 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529922 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
41529969 CTTATCACATATATACACTTTCACATTCA
1 CTTATCACATATATACACTTTCACATTCA
41529998 ATTTCATCAT
Statistics
Matches: 1050, Mismatches: 13, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 1050 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:41534119 original size:20 final size:20
Alignment explanation
Indices: 41534083--41534121 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
41534073 TATGACTTAT
41534083 AAACATTTAAAAGTAATTTA
1 AAACATTTAAAAGTAATTTA
41534103 AAACACTTTAAAA-TAATTT
1 AAACA-TTTAAAAGTAATTT
41534122 TTAATTGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.36
Consensus pattern (20 bp):
AAACATTTAAAAGTAATTTA
Found at i:41536422 original size:27 final size:28
Alignment explanation
Indices: 41536364--41536424 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
41536354 CTTAAGAGTG
**
41536364 CGCCACAAATGTGTTCCTTACAAAGTTT
1 CGCCACAAATGCATTCCTTACAAAGTTT
* *
41536392 -GCCACAAATGCATTCCTTCCATA-TTT
1 CGCCACAAATGCATTCCTTACAAAGTTT
41536418 CGCCACA
1 CGCCACA
41536425 TAGGCTCTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 3 0.11
27 25 0.89
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.30
Consensus pattern (28 bp):
CGCCACAAATGCATTCCTTACAAAGTTT
Found at i:41540922 original size:21 final size:22
Alignment explanation
Indices: 41540882--41540926 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
41540872 GCCATCTTCG
41540882 TTGTCCCAAATTCAAAATTTTC
1 TTGTCCCAAATTCAAAATTTTC
*
41540904 TTGTCCCAAATTCAAATTTTTC
1 TTGTCCCAAATTCAAAATTTTC
41540926 T
1 T
41540927 AAGTCATCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.04, T:0.44
Consensus pattern (22 bp):
TTGTCCCAAATTCAAAATTTTC
Found at i:41543161 original size:15 final size:13
Alignment explanation
Indices: 41543132--41543158 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
41543122 GCTCGGCAGG
41543132 GACACGCTCGTGT
1 GACACGCTCGTGT
41543145 GACACGCTCGTGT
1 GACACGCTCGTGT
41543158 G
1 G
41543159 TGATTGCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.22
Consensus pattern (13 bp):
GACACGCTCGTGT
Found at i:41547004 original size:33 final size:32
Alignment explanation
Indices: 41546967--41547078 Score: 120
Period size: 33 Copynumber: 3.4 Consensus size: 32
41546957 ACCTAAAAGA
*
41546967 TACAACTGGAAAAGGAAATGTACACTGTGTGTG
1 TACAACTGGAAAAGGAAACGTACACT-TGTGTG
**
41547000 TACAACTTAAAAAGGAAACGTACACTTTGTGTG
1 TACAACTGGAAAAGGAAACGTACAC-TTGTGTG
* * *
41547033 TAC-ACTTGAAAAGGAAAGGTACGCCTTGTGTG
1 TACAACTGGAAAAGGAAACGTAC-ACTTGTGTG
41547065 TACAA-TGTGAAAAG
1 TACAACTG-GAAAAG
41547079 TGGTAGCTTT
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
32 28 0.41
33 39 0.57
34 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (32 bp):
TACAACTGGAAAAGGAAACGTACACTTGTGTG
Found at i:41547062 original size:32 final size:31
Alignment explanation
Indices: 41546975--41547078 Score: 109
Period size: 32 Copynumber: 3.2 Consensus size: 31
41546965 GATACAACTG
* *
41546975 GAAAAGGAAATGTACACTGTGTGTGTACAACTT
1 GAAAAGGAAACGTACCCT-TGTGTGTAC-ACTT
* *
41547008 AAAAAGGAAACGTACACTTTGTGTGTACACTT
1 GAAAAGGAAACGTAC-CCTTGTGTGTACACTT
* *
41547040 GAAAAGGAAAGGTACGCCTTGTGTGTACAATGT
1 GAAAAGGAAACGTAC-CCTTGTGTGTACACT-T
41547073 GAAAAG
1 GAAAAG
41547079 TGGTAGCTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
32 30 0.50
33 29 0.48
34 1 0.02
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (31 bp):
GAAAAGGAAACGTACCCTTGTGTGTACACTT
Found at i:41547108 original size:31 final size:31
Alignment explanation
Indices: 41547071--41547244 Score: 208
Period size: 31 Copynumber: 5.5 Consensus size: 31
41547061 TGTGTACAAT
*
41547071 GTGAAAAGTGGTAGCTTTGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
41547102 GTGAAAAGTGGTAGCTTCGACTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
41547133 GTGAAAAGTAGTAGCTTCGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * *
41547164 GTGAAAAGTGGTAGCTCCAGCTATCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
41547195 CTGAATAA-TGGTAGCTTCGGCTACAATTGA-CAA
1 GTGAA-AAGTGGTAGCTTCGGCTAC--CTGATC-A
*
41547228 GTGATAAGTGGTAGCTT
1 GTGAAAAGTGGTAGCTT
41547245 TAGCTACACT
Statistics
Matches: 121, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
31 100 0.83
32 5 0.04
33 16 0.13
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:41547339 original size:27 final size:27
Alignment explanation
Indices: 41547308--41547372 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
41547298 TAGTTGAACT
* *
41547308 ATGGCAAAGTGATAAAGTGTGCCAATC
1 ATGGCAAAGTGATAAAGTGTGACAAAC
*
41547335 ATGGCAAAGTGATATAGTGTGACAAAC
1 ATGGCAAAGTGATAAAGTGTGACAAAC
*
41547362 ATAGCAAAGTG
1 ATGGCAAAGTG
41547373 TTCAGTGATC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.40, C:0.12, G:0.26, T:0.22
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGACAAAC
Found at i:41557026 original size:39 final size:40
Alignment explanation
Indices: 41556925--41557116 Score: 178
Period size: 40 Copynumber: 4.8 Consensus size: 40
41556915 TTGAATGATG
* * * * *
41556925 TCCGGGATAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAT
* *
41556964 ATCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAT
* * *
41557005 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* *
41557044 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* * *
41557083 AACCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
41557117 AGCTATATCC
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 34 0.27
40 83 0.66
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
Found at i:41557061 original size:79 final size:81
Alignment explanation
Indices: 41556925--41557109 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
41556915 TTGAATGATG
* *
41556925 TCCGGGATAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
41556989 TGTACGAGATACTA-A
66 TGTACGAGATACTATA
* * **
41557004 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCT-AGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
41557066 TTTGTGCGAGTTACTATA
64 TTTGTACGAGATACTATA
* *
41557084 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
41557110 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTACGAGATACTATA
Found at i:41557131 original size:79 final size:79
Alignment explanation
Indices: 41556978--41557142 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
41556968 GGACTAAGAT
* ** *
41556978 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCTAGTTACTAA
1 CCGAAGGCATTTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
41557043 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
41557057 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTACGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
41557120 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
41557136 CCGAAGG
1 CCGAAGG
41557143 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:41559701 original size:25 final size:26
Alignment explanation
Indices: 41559653--41559702 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
41559643 TAAAGGTACG
*
41559653 GATAAATGTTTTATTATATTTGAGTCT
1 GATAAATGTTATATTATA-TTGAGTCT
*
41559680 GATAAATGTTATGTTATA-TGAGT
1 GATAAATGTTATATTATATTGAGT
41559703 AAATACATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
27 16 0.76
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.48
Consensus pattern (26 bp):
GATAAATGTTATATTATATTGAGTCT
Found at i:41562560 original size:33 final size:33
Alignment explanation
Indices: 41562523--41562610 Score: 115
Period size: 33 Copynumber: 2.7 Consensus size: 33
41562513 ACCTAAAATA
* *
41562523 TACAACTGGAAAAGGAAATGTACAATGTGTGTG
1 TACAACTTGAAAAGGAAACGTACAATGTGTGTG
* * *
41562556 TACAACTTAAAAAGGAAACGTACACTTTGTGTG
1 TACAACTTGAAAAGGAAACGTACAATGTGTGTG
*
41562589 TAC-ACTTGAAAAGGAAAGGTAC
1 TACAACTTGAAAAGGAAACGTAC
41562611 GCCTTGTGTG
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
32 17 0.35
33 31 0.65
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.24
Consensus pattern (33 bp):
TACAACTTGAAAAGGAAACGTACAATGTGTGTG
Done.