Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 128 of 322
Found at i:41842682 original size:35 final size:35
Alignment explanation
Indices: 41842643--41842714 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 35
41842633 CATCTCTAGA
* *
41842643 GCTTGGCAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
* * *
41842678 GCTTGGAAAATATGGAAGGGGATCTTTAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
41842713 GC
1 GC
41842715 GATCCTAGAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.28
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:41845789 original size:5 final size:5
Alignment explanation
Indices: 41845781--41845814 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
41845771 TACCGTACCG
41845781 TGCCA TGCCA TGCCA TGCCA TGCCA T--CA TGCCA T
1 TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA T
41845815 ACTTCATTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 3 0.11
5 24 0.89
ACGTcount: A:0.21, C:0.38, G:0.18, T:0.24
Consensus pattern (5 bp):
TGCCA
Found at i:41857817 original size:42 final size:43
Alignment explanation
Indices: 41857764--41857856 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 43
41857754 GGTGGTGTGA
* * *
41857764 GAGCCTCGAGCAGCATCGGCGCCTTGGTG-CTCGGATGTGCAT
1 GAGCCTCGAGCAGCATAGACACCTTGGTGCCTCGGATGTGCAT
* **
41857806 GAGCCTTGAGCAGCATAGACACCTTGGTGCCTCGGATGTGCGG
1 GAGCCTCGAGCAGCATAGACACCTTGGTGCCTCGGATGTGCAT
41857849 GAGCCTCG
1 GAGCCTCG
41857857 GACACCATCG
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 25 0.58
43 18 0.42
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.20
Consensus pattern (43 bp):
GAGCCTCGAGCAGCATAGACACCTTGGTGCCTCGGATGTGCAT
Found at i:41858207 original size:170 final size:171
Alignment explanation
Indices: 41857843--41861598 Score: 3506
Period size: 170 Copynumber: 22.2 Consensus size: 171
41857833 TGCCTCGGAT
* * * * *
41857843 GTGCGGGAGCCTCGGACACCATCGGA-AAACTAGGCCATTGGTTGTGCCGGAGCCTC-GAGCACC
1 GTGCGGGAGCCTCGGGCACCATC-GACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAG-ACC
* * * *
41857906 ATCGGCAACCTAGGCCCTTGGTCGTGGGGGAACCTCGGGCACCATC-GACAGCCTAGACCCCTGG
64 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGA-A-CCTAGGCCCTTGG
*
41857970 TCGTGCGGGAGCCTC-AGGCACCATCAGCAACCTAGGCCCTTGGTC
127 TCGTGCGGGAGCCTCGA-GCACCATCGGCAACCTAGGCCCTTGGTC
* * * * **
41858015 GTGCGAGAGCCTCGGG-ACCATCGACAACATAGGCCTTTGGTCTTGCGAAAGCCTCGGAG-CCAT
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAGACCAT
* * * * * *
41858078 CGGTAACCTAGGCCCTTGGTCATACGGGAGCCTCGGGCACCATCGGGACCTAGACCCTTGGTCTT
66 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGT
* * *
41858143 GCGGGAACTTCGAGTACCATCGGCAACCTAGGCCCTTGGTC
131 GCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
41858184 GTGCGGGAACCTCGGGCACCATCGACAGCCTAGACCCCTGGTCGTGCGGGAGCCTCAGG-CACCA
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGAGACCA
* * * * *
41858248 TCAGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGACAACATAGGCCTTTGGTC
65 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG-GAACCTAGGCCCTTGGTC
* ** *
41858312 TTGCGAAAGCCTCG-G-AGCCATCGGTAACCTAGGCCCTTGGTC
129 GTGCGGGAGCCTCGAGCA-CCATCGGCAACCTAGGCCCTTGGTC
* * ** * * * *
41858354 ATACGGGAGCCTCGGGCACCATCG-GGACCTAGACCCTTGGTCTTGCGGGAACTTC-GAGTACCA
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAG-ACCA
* * * *
41858417 TCGGCAACCTAGGCCCTTGGTCGTGGGGGAACCTCGGGCACCATC-GACAGCCTAGACCCCTGGT
65 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGA-A-CCTAGGCCCTTGGT
*
41858481 CGTGCGGGAGCCTC-AGGCACCATCAGCAACCTAGGCCCTTGGTC
128 CGTGCGGGAGCCTCGA-GCACCATCGGCAACCTAGGCCCTTGGTC
* * * * **
41858525 GTGCGAGAGCCTCGGG-ACCATCGACAACATAGGCCTTTGGTCTTGCGAAAGCCTCGGAG-CCAT
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAGACCAT
* * * * * *
41858588 CGGTAACCTAGGCCCTTGGTCATACGGGAGCCTCGGGCACCATCGGGACCTAGACCCTTGGTCTT
66 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGT
* * *
41858653 GCGGGAACTTCGAGTACCATCGGCAACCTAGGCCCTTGGTC
131 GCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
41858694 GTGGGGGAACCTCGGGCACCATCGACAGCCTAGACCCCTGGTCGTGCGGGAGCCTCAGG-CACCA
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGAGACCA
* * * * *
41858758 TCAGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGACAACATAGGCCTTTGGTC
65 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG-GAACCTAGGCCCTTGGTC
* ** *
41858822 TTGCGAAAGCCTCG-G-AGCCATCGGTAACCTAGGCCCTTGGTC
129 GTGCGGGAGCCTCGAGCA-CCATCGGCAACCTAGGCCCTTGGTC
* * ** * * * *
41858864 ATACGGGAGCCTCGGGCACCATCG-GGACCTAGACCCTTGGTCTTGCGGGAACTTC-GAGTACCA
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAG-ACCA
*
41858927 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGTACCATCGGCAACCTAGGCCCTTGGTC
65 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTC
* * * ** *
41858992 GTGCGGGAGCCACGGGCAACATCGG-GGCCTAGGCCTTTGGTC
129 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
41859034 ATGTGGGAGACTCGGGCACCATCGGC-ACCTTAGTG--CTTGGATC-TGCGGGAGCCTC-GAGCA
1 GTGCGGGAGCCTCGGGCACCATCGACAACC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCGGAG-A
* * * * *
41859094 CCATCGGTAACCTAGGCCCCTGGTCTTGCGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCCTG
62 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTG
* * * * *
41859159 GTCGTGCGAGAGCCTCG-GGACCATCGTCAACCTAGCCCCCTGGTC
126 GTCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** *
41859204 GTGCAGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTAGAT-GTGCGGGAGCCTCGG-GCACC
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGAG-ACC
* * * * * * *
41859266 ATTGGCTACCTAGGCCCCTAGTCGTGCGGGAGCCTCGGGCACCATTGGTAACCTAGTCCCCTGGT
64 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGT
* *
41859331 CGTGCGGGAGCCTC-AGGCACCATCGGCAATCTAGGCGCTTGGTC
128 CGTGCGGGAGCCTCGA-GCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
41859375 GTGCGAGAGCCTCGGG-ACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCTTCGG-GCCCCA
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAG-ACCA
* ** * * * **
41859437 TCGGC-ACCTTGGTGCTTGGAT-GTCCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCAAGGT
65 TCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGT
* *
41859500 CGTGCGGGAGCCTCGGGTACCATCGGCAACCTAGGCCCTTGGTC
128 CGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
* * *** *
41859544 GTGCGGGAGCCTCGGGAATCATCG-GGGCCTAGGCCCTTGGTCGTGCGAGAGCCTC-GAGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAG-ACCA
* * *
41859607 TCGGCAACCTAGGCCATTGGTCATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTCGTC
65 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTC
* * * *
41859672 GTACGGGAGCCTCGAGCATCATCAGC-GCCTAGGCCCTTGGTC
129 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
* * *** *
41859714 GTGCGGGAGCCTCGGGAATCATCG-GGGCCTAGGCCCTTGGTCGTGCGAGAGCCTC-GAGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAG-ACCA
* * *
41859777 TCGGCAACCTAGGCCATTGGTCATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTCGTC
65 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTC
* * * *
41859842 GTACGGGAGCCTCGAGCATCATCAGC-GCCTAGGCCCTTGGTC
129 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
* * *** *
41859884 GTGCGGGAGCCTCGGGAATCATCG-GGGCCTAGGCCCTTGGTCGTGCGAGAGCCTC-GAGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAG-ACCA
* * *
41859947 TCGGCAACCTAGGCCATTGGTCATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTCGTC
65 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTC
* * * *
41860012 GTACGGGAGCCTCGAGCATCATCAGC-GCCTAGGCCCTTGGTC
129 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
* ** *
41860054 GTGCTGGAGCCTCGGGCACCATCGAC-ACCTTA-GTACTTGGAT-TTGCGGGAGCCTCGG-GCAC
1 GTGCGGGAGCCTCGGGCACCATCGACAACC-TAGGCCCTTGG-TCGTGCGGGAGCCTCGGAG-AC
* * * * * * * * *
41860115 TATCAGCAATCTAGGCCCCTGGCCTTGCGGGAGCCTCGGGCACCATTGGCAACCTATGCCCCTGG
63 CATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGG
* * * * *
41860180 TCGTACGAGAGCCTCG-GGACCATCGGCAACCTAGGCCCCTAGTC
127 TCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * ** *
41860224 GTACGGGAGCCTCGGGCACCACCGGC-ACCTTGGTGCTTGGAT-GTGTGGGAGCCTCGG-GCACC
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGAG-ACC
* * * * * *
41860286 ATCGGTAACCTAGCCCCCTAGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCGCTTGGT
64 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGT
* * *
41860351 CGTGCGAGAGCCTCG-GGACCATCGGC-ACCTAGGCCCTTGGTT
128 CGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** * * *
41860393 GTGTGGGAGCCTCGGGCACCATTGGTAACCTAGTCCCCTGGTCGTGCGGGAGCCTCAGG-CACCA
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGAGACCA
* * * *
41860457 TCGGCAATCTAGGCGCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTGGTCG
65 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCG
* * * **
41860521 TGCGGGAGCCT-TAGGCACCATCGG-TACCTTGGTGCTTGGAT-
130 TGCGGGAGCCTCGA-GCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * * *
41860562 GTGCGAGAGCCTCAGACACCATCGGCAACCTAGGCCCATGGTCGTGCGAGAGCCTCGG-GTACCA
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAG-ACCA
* * *
41860626 TCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGGACCTAGGCCCTTGGTGG
65 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCG
* *
41860691 TACGGGAGCCTCGAGCACCATTGGCAACCTAGGCCCTTGGTC
130 TGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
*
41860733 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAACCTC-GAGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAG-ACCA
* * *
41860797 TCAGC-GCCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTC
65 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG-GAACCTAGGCCCTTGGTC
* * *
41860861 GTGCGGGAACCTCGAGCACCATCAGC-GCCTAGGCCCTTGGTC
129 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
*
41860903 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAACCTC-GAGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAG-ACCA
* * *
41860967 TCAGC-GCCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTC
65 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG-GAACCTAGGCCCTTGGTC
* * *
41861031 GTGCGGGAACCTCGAGCACCATCAGC-GCCTAGGCCCTTGGTC
129 GTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
* **
41861073 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTA-GTACTTGGATC-TGCGGGAGCCTCGG-GCAC
1 GTGCGGGAGCCTCGGGCACCATCGACAACC-TAGGCCCTTGG-TCGTGCGGGAGCCTCGGAG-AC
* * * * *
41861134 CACCGACAACCTAGG-CC-----CAT----G-GCCTCGGGCACCATTGGCAACCTAGGCCCCTGG
63 CATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGG
***** * *
41861188 TCGTATAAAAGCCTCGAG-ACTATCGGCAACCTAGGCCCCTGGTC
127 TCGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** ** * * *
41861232 GTGCGAGAGCCTCGGGCACCATCGGC-ACCTTTGTGCTTGAAT-GTGCGGGAGCCTTGG-GCAGC
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTG-GTCGTGCGGGAGCCTCGGAG-ACC
* * * * * * *
41861294 ATCGGTAACCTAGGCCCCTGGCCGTGCGGGAGCCTTGGGCACCATCGGTAACCTAGTCCCCTAGT
64 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGT
* * * *
41861359 CGTGCGGGAGCCTCGGGCACCATAGGCAACCTAGACGCTTGGTC
128 CGTGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
41861403 GTGCGAGAGCCACGGG-ACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCTTCAGG-CACCA
1 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGAGACCA
* * ** * * * * * * *
41861465 CCGGC-ACCTTGGTGCTTGGAT-GTGGGGGAGCCTCAGGCACCATCAGCAACCCACGCCTTTAGT
65 TCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATC-GGAACCTAGGCCCTTGGT
* * * * *
41861528 CATGCGGGAGCCTCG-GATACCATCGGTAACCTAGGCCCCTGGTT
128 CGTGCGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTTGGTC
*
41861572 GTGCGAGAGCCTCGGGCACCATCGACA
1 GTGCGGGAGCCTCGGGCACCATCGACA
41861599 CCTTGGTGCC
Statistics
Matches: 3035, Mismatches: 449, Indels: 201
0.82 0.12 0.05
Matches are distributed among these distances:
158 8 0.00
159 118 0.04
160 3 0.00
164 2 0.00
165 2 0.00
167 2 0.00
168 31 0.01
169 644 0.21
170 1724 0.57
171 479 0.16
172 22 0.01
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (171 bp):
GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGAGACCAT
CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGT
GCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:41861160 original size:32 final size:32
Alignment explanation
Indices: 41861123--41861183 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
41861113 ATCTGCGGGA
41861123 GCCTCGGGCACCACCGACAACCTAGGCCCATG
1 GCCTCGGGCACCACCGACAACCTAGGCCCATG
** *
41861155 GCCTCGGGCACCATTGGCAACCTAGGCCC
1 GCCTCGGGCACCACCGACAACCTAGGCCC
41861184 CTGGTCGTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.20, C:0.43, G:0.26, T:0.11
Consensus pattern (32 bp):
GCCTCGGGCACCACCGACAACCTAGGCCCATG
Found at i:41861285 original size:159 final size:159
Alignment explanation
Indices: 41860996--41861316 Score: 412
Period size: 159 Copynumber: 2.0 Consensus size: 159
41860986 TCGTGCGGGA
* * ** *
41860996 GCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAACCTCGAGCACCATCAGCGCCT
1 GCCTCGGGCACCATCGACAACCTAGGCCCCTGGTCGTGAGAAAACCTCGAGCACCATCAGCACCT
* * *
41861061 AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTAGTACTTGGATCTGCGGGAGCC
66 AGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTAGTACTTGAATCTGCGGGAGCC
41861126 TCGGGCACCACCGACAACCTAGGCCCATG
131 TCGGGCACCACCGACAACCTAGGCCCATG
* * * * *
41861155 GCCTCGGGCACCATTGGCAACCTAGGCCCCTGGTCGT-ATAAAAGCCTCGAG-ACTATCGGCAAC
1 GCCTCGGGCACCATCGACAACCTAGGCCCCTGGTCGTGAGAAAA-CCTCGAGCACCATCAGC-AC
* * *
41861218 CTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTTGTGCTTGAATGTGCGGGAG
64 CTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTAGTACTTGAATCTGCGGGAG
* * * ** *
41861283 CCTTGGGCAGCATCGGTAACCTAGGCCCCTG
129 CCTCGGGCACCACCGACAACCTAGGCCCATG
41861314 GCC
1 GCC
41861317 GTGCGGGAGC
Statistics
Matches: 138, Mismatches: 22, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
158 9 0.07
159 129 0.93
ACGTcount: A:0.18, C:0.34, G:0.30, T:0.18
Consensus pattern (159 bp):
GCCTCGGGCACCATCGACAACCTAGGCCCCTGGTCGTGAGAAAACCTCGAGCACCATCAGCACCT
AGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTAGTACTTGAATCTGCGGGAGCC
TCGGGCACCACCGACAACCTAGGCCCATG
Found at i:41861340 original size:43 final size:42
Alignment explanation
Indices: 41861155--41861595 Score: 314
Period size: 43 Copynumber: 10.4 Consensus size: 42
41861145 TAGGCCCATG
* * *****
41861155 GCCTCGGGCACCATTGGCAACCTAGGCCCCTGGTCGTATAAAA
1 GCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGA
* * * *
41861198 GCCTCGAG-ACTATCGGCAACCTAGGCCCCTGGTCGTGCGAGA
1 GCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGA
* ** ** *
41861240 GCCTCGGGCACCATCGGCACCTTTGTGCTTGAAT-GTGCGGGA
1 GCCTCGGGCACCATCGGAACCTAGGCCCTTG-GTCGTGCGGGA
* * * *
41861282 GCCTTGGGCAGCATCGGTAACCTAGGCCCCTGGCCGTGCGGGA
1 GCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGA
* * * *
41861325 GCCTTGGGCACCATCGGTAACCTAGTCCCCTAGTCGTGCGGGA
1 GCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGA
* * * *
41861368 GCCTCGGGCACCATAGGCAACCTAGACGCTTGGTCGTGCGAGA
1 GCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGA
* *
41861411 GCCACGGG-ACCATCGGCACCTAGGCCCTTGGTCGTGCGGGA
1 GCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGA
* * * * * ** *
41861452 GCTTCAGGCACCACCGGCACCTTGGTGCTTGGAT-GTGGGGGA
1 GCCTCGGGCACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGA
* * * * * * *
41861494 GCCTCAGGCACCATCAGCAACCCACGCCTTTAGTCATGCGGGA
1 GCCTCGGGCACCATC-GGAACCTAGGCCCTTGGTCGTGCGGGA
** * * *
41861537 GCCTCGGATACCATCGGTAACCTAGGCCCCTGGTTGTGCGAGA
1 GCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGA
41861580 GCCTCGGGCACCATCG
1 GCCTCGGGCACCATCG
41861596 ACACCTTGGT
Statistics
Matches: 309, Mismatches: 80, Indels: 18
0.76 0.20 0.04
Matches are distributed among these distances:
41 26 0.08
42 113 0.37
43 170 0.55
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (42 bp):
GCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGA
Found at i:41861507 original size:84 final size:85
Alignment explanation
Indices: 41861316--41861595 Score: 201
Period size: 84 Copynumber: 3.3 Consensus size: 85
41861306 GGCCCCTGGC
* * *
41861316 CGTGCGGGAGCCTTGGGCACCATCGGTAACCTAGTCCCCTAGTCGTGCGGGAGCCTCGGGCACCA
1 CGTGCGGGAGCC-TCGGCACCATCGGTAACCTAGGCCCCTAGTCGTGCGGGAGCCTCAGGCACCA
*
41861381 TAGGCAACCTAGACGCTTGGT
65 CAGGCAACCTAGACGCTTGGT
* * * * * * *
41861402 CGTGCGAGAGCCACGGGACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCTTCAGGCACCAC
1 CGTGCGGGAGCCTCGGCACCATCGGTAACCTAGGCCCCTAGTCGTGCGGGAGCCTCAGGCACCAC
* * **
41861466 CGGC-ACCTTGGTGCTTGGAT
66 AGGCAACCTAGACGCTTGG-T
* * * * * ** * *
41861486 -GTGGGGGAGCCTCAGGCACCATCAGCAACCCACGCCTTTAGTCATGCGGGAGCCTC-GGATACC
1 CGTGCGGGAGCCTC-GGCACCATCGGTAACCTAGGCCCCTAGTCGTGCGGGAGCCTCAGG-CACC
* * * *
41861549 ATC-GGTAACCTAGGCCCCTGGT
64 A-CAGGCAACCTAGACGCTTGGT
* *
41861571 TGTGCGAGAGCCTCGGGCACCATCG
1 CGTGCGGGAGCCTC-GGCACCATCG
41861596 ACACCTTGGT
Statistics
Matches: 150, Mismatches: 37, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
83 21 0.14
84 47 0.31
85 40 0.27
86 42 0.28
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (85 bp):
CGTGCGGGAGCCTCGGCACCATCGGTAACCTAGGCCCCTAGTCGTGCGGGAGCCTCAGGCACCAC
AGGCAACCTAGACGCTTGGT
Found at i:41861621 original size:255 final size:255
Alignment explanation
Indices: 41857843--41861627 Score: 3766
Period size: 255 Copynumber: 14.9 Consensus size: 255
41857833 TGCCTCGGAT
* * * * * *
41857843 GTGCGGGAGCCTCGGACACCATCGGAAAACTAGGCCATTGGTTGTGCCGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
* * * * * *
41857908 CGGCAACCTAGGCCCTTGGTCGTGGGGGAACCTCGGGCACCATCGACAGCCTAGACCCCTGGTCG
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* *
41857973 TGCGGGAGCCTCAGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATC
130 TGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * * ** *
41858037 GACAACATAGGCCTTTGGTCTTGCGAAAGCCTC-GG-AGCCATCGGTAACCTAGGCCCTTGGTC
194 GACACCTTAGGCC-TTGGTCGTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGCCCTTGGTC
* * * * * * * *
41858099 ATACGGGAGCCTCGGGCACCATCGGGACCTAGACCCTTGGTCTTGCGGGAACTTCGAGTACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
* * * * *
41858164 GGCAACCTAGGCCCTTGGTCGTGCGGGAACCTCGGGCACCATCGACAGCCTAGACCCCTGGTCGT
66 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
41858229 GCGGGAGCCTCAGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCG
131 GCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* * * ** *
41858293 ACAACATAGGCCTTTGGTCTTGCGAAAGCCTC-GG-AGCCATCGGTAACCTAGGCCCTTGGTC
195 ACACCTTAGGCC-TTGGTCGTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGCCCTTGGTC
* * * * * * * *
41858354 ATACGGGAGCCTCGGGCACCATCGGGACCTAGACCCTTGGTCTTGCGGGAACTTCGAGTACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
* * * * * *
41858419 GGCAACCTAGGCCCTTGGTCGTGGGGGAACCTCGGGCACCATCGACAGCCTAGACCCCTGGTCGT
66 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
41858484 GCGGGAGCCTCAGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCG
131 GCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* * * ** *
41858548 ACAACATAGGCCTTTGGTCTTGCGAAAGCCTC-GG-AGCCATCGGTAACCTAGGCCCTTGGTC
195 ACACCTTAGGCC-TTGGTCGTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGCCCTTGGTC
* * * * * * * *
41858609 ATACGGGAGCCTCGGGCACCATCGGGACCTAGACCCTTGGTCTTGCGGGAACTTCGAGTACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
* * * * * *
41858674 GGCAACCTAGGCCCTTGGTCGTGGGGGAACCTCGGGCACCATCGACAGCCTAGACCCCTGGTCGT
66 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* *
41858739 GCGGGAGCCTCAGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCG
131 GCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* * * ** *
41858803 ACAACATAGGCCTTTGGTCTTGCGAAAGCCTC-GG-AGCCATCGGTAACCTAGGCCCTTGGTC
195 ACACCTTAGGCC-TTGGTCGTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGCCCTTGGTC
* * * * * * * *
41858864 ATACGGGAGCCTCGGGCACCATCGGGACCTAGACCCTTGGTCTTGCGGGAACTTCGAGTACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
*
41858929 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGTACCATCGGCAACCTAGGCCCTTGGTCGT
66 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * ** * * * *
41858994 GCGGGAGCCACGGGCAACATCGG-GGCCTAGGCCTTTGGTCATGTGGGAGACTCGGGCACCATCG
131 GCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* * * *
41859058 GCACCTTAGTG-CTTGGATC-TGCGGGAGCCTCGAGCACCATCGGTAACCTAGGCCCCTGGTC
195 ACACCTTAG-GCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
41859119 TTGCGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCG-GGACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
* * * * * ** *
41859183 CGTCAACCTAGCCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTAGAT-
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* * * *
41859246 GTGCGGGAGCCTCGGGCACCATTGGCTACCTAGGCCCCTAGTCGTGCGGGAGCCTCGGGCACCAT
129 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA-
* * * * * *
41859311 TGGTA-ACC-TAGTCCCCTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAATCTAGGCGCTTGGT
192 TCG-ACACCTTAG-GCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
41859374 C
255 C
* * * *
41859375 GTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCTTCGGGCCCCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
* ** * * * **
41859439 GGC-ACCTTGGTGCTTGGAT-GTCCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCAAGGTCG
66 GGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* * *
41859502 TGCGGGAGCCTCGGGTACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGAATCATC
130 TGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
*** * * *
41859567 GGGGCC-TAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGCAACCTAGGCCATTGGTC
194 GACACCTTAGG-CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
41859629 ATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTCGTCGTACGGGAGCCTCGAGCATCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
* * * * **
41859694 CAGC-GCCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGAATCATCGG-GGCCTAGGCCCTTGGTCG
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* * *
41859757 TGCGAGAGCCTCGAGCACCATCGGCAACCTAGGCCATTGGTCATGCGGGAGCCTCGGGCACCATC
130 TGCGGGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * * * * * *
41859822 GGCAACC-TAGGCCCTTCGTCGTACGGGAGCCTCGAGCATCATCAGC-GCCTAGGCCCTTGGTC
194 GAC-ACCTTAGG-CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** *
41859884 GTGCGGGAGCCTCGGGAATCATCGGGGCCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
* * *
41859949 GGCAACCTAGGCCATTGGTCATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTCGTCGT
66 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * * * *
41860014 ACGGGAGCCTCGAGCATCATCAGC-GCCTAGGCCCTTGGTCGTGCTGGAGCCTCGGGCACCATCG
131 GCGGGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
** * * * * * *
41860078 ACACCTTAGTACTTGGAT-TTGCGGGAGCCTCGGGCACTATCAGCAATCTAGGCCCCTGGCC
195 ACACCTTAGGCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * * *
41860139 TTGCGGGAGCCTCGGGCACCATTGGCAACCTATGCCCCTGGTCGTACGAGAGCCTCG-GGACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
* * * * * **
41860203 CGGCAACCTAGGCCCCTAGTCGTACGGGAGCCTCGGGCACCACCGGC-ACCTTGGTGCTTGGAT-
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * * *
41860266 GTGTGGGAGCCTCGGGCACCATCGGTAACCTAGCCCCCTAGTCGTGCGGGAGCCTCAGGCACCAT
129 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * *
41860331 CGGCAACC-TAGGCGCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGC-ACCTAGGCCCTTGGTT
193 CGAC-ACCTTAGGC-CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
41860393 GTGTGGGAGCCTCGGGCACCATTGGTAACCTAGTCCCCTGGTCGTGCGGGAGCCTC-AGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA-GCACCA
* * *
41860457 TCGGCAATCTAGGCGCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGC-ACCTAGGCCCTTGGTC
64 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** * * *
41860520 GTGCGGGAGCCTTAGGCACCATCGG-TACCTTGGTGCTTGGAT-GTGCGAGAGCCTCAGACACCA
129 GTGCGGGAGCC-TCGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
* * * *
41860583 TCGGCAACC-TAGGCCCATGGTCGTGCGAGAGCCTCGGGTACCATCGGCAACCTAGGCCCTTGGT
192 TCGAC-ACCTTAGG-CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
41860647 C
255 C
* * * * *
41860648 GTGTGGGAGCCTCGGGCACCATCGGGACCTAGGCCCTTGGTGGTACGGGAGCCTCGAGCACCATT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
*
41860713 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGT
66 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* * *
41860778 GCGGGAACCTCGAGCACCATCAGC-GCCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
131 GCGGGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* * * *
41860842 ACAACC-TAGGCCCTTGGTCGTGCGGGAACCTCGAGCACCATCAGC-GCCTAGGCCCTTGGTC
195 AC-ACCTTAGG-CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
41860903 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAACCTCGAGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
* * *
41860968 CAGC-GCCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCG
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* * *
41861032 TGCGGGAACCTCGAGCACCATCAGC-GCCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
130 TGCGGGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* ** * *
41861096 GGCACCTTAGTACTTGGATC-TGCGGGAGCCTCGGGCACCACCGACAACCTAGG-CC-----C
194 GACACCTTAGGCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ***** *
41861152 AT----G-GCCTCGGGCACCATTGGCAACCTAGGCCCCTGGTCGTATAAAAGCCTCGAG-ACTAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCAT
* * ** ** *
41861211 CGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTTTGTGCTTGAAT-
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG-GTC
* * * * * *
41861274 GTGCGGGAGCCTTGGGCAGCATCGGTAACCTAGGCCCCTGGCCGTGCGGGAGCCTTGGGCACCAT
129 GTGCGGGAGCC-TCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * * *
41861339 CGGTA-ACC-TAGTCCCCTAGTCGTGCGGGAGCCTCGGGCACCATAGGCAACCTAGACGCTTGGT
193 C-G-ACACCTTAG-GCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
41861402 C
255 C
* * * *
41861403 GTGCGAGAGCCACGGG-ACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCTTC-AGGCACCAC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA-GCACCAT
* ** * * * * * * *
41861466 CGGC-ACCTTGGTGCTTGGAT-GTGGGGGAGCCTCAGGCACCATCAGCAACCCACGCCTTTAGTC
65 CGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
41861529 ATGCGGGAGCCTCGGATACCATCGGTAACCTAGGCCCCTGGTTGTGCGAGAGCCTCGGGCACCAT
129 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* *
41861594 CGACACCTTGGTGCCTCGGAT-GTGCGGGAGCCTC
193 CGACACCTTAG-GCCTTGG-TCGTGCGGGAGCCTC
41861628 TAATAGCATT
Statistics
Matches: 3047, Mismatches: 400, Indels: 165
0.84 0.11 0.05
Matches are distributed among these distances:
243 34 0.01
244 123 0.04
245 37 0.01
246 1 0.00
249 2 0.00
251 2 0.00
253 65 0.02
254 559 0.18
255 1783 0.59
256 441 0.14
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (255 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATC
GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
GCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGA
CACCTTAGGCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:41866469 original size:46 final size:46
Alignment explanation
Indices: 41866297--41866466 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 46
41866287 TGTAACCCGC
* * ** * *
41866297 CCATAAGTGAAATCAGACTCAACTCAATAAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
*
41866343 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTT-ACA-
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCACAT
* * *
41866392 CC-T--CTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
41866436 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
41866467 TTCAGATGCC
Statistics
Matches: 101, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 1 0.01
46 55 0.54
47 28 0.28
48 1 0.01
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
Found at i:41866491 original size:46 final size:46
Alignment explanation
Indices: 41866339--41866491 Score: 116
Period size: 46 Copynumber: 3.3 Consensus size: 46
41866329 TCGGGCGTTC
* * * *
41866339 ACATCCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTT
1 ACATCC-T-AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCCA--T
* * * *
41866389 ACA-CCT-CTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 ACATCCTAGT-GAACTCGGACTCAACTCAACGAGTTC--AGATGCCCAT
* * *
41866436 CCAT--AAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCCAA
1 ACATCCTAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCCAT
41866480 ACATCCTAGTGA
1 ACATCCTAGTGA
41866492 CATGCCACTT
Statistics
Matches: 79, Mismatches: 17, Indels: 18
0.69 0.15 0.16
Matches are distributed among these distances:
44 9 0.11
46 32 0.41
47 28 0.35
48 1 0.01
49 6 0.08
50 3 0.04
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (46 bp):
ACATCCTAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCCAT
Found at i:41873027 original size:58 final size:59
Alignment explanation
Indices: 41872936--41873056 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
41872926 ACCTCCCCAA
* * * * *
41872936 TCCCAAAAGGTAGAATTCGGGTACCGTTGCATGTTCGGTACCCAATAATTAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTGCATGTCCAGTACCCAACAATGAATGAATCG
*
41872995 TCCC-AAAGGTAGAATTCGGATACCGTTGCATGTCCAGTACCCAACAATGGATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTGCATGTCCAGTACCCAACAATGAATGAATCG
41873053 TCCC
1 TCCC
41873057 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 52 0.93
59 4 0.07
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTGCATGTCCAGTACCCAACAATGAATGAATCG
Found at i:41873463 original size:24 final size:24
Alignment explanation
Indices: 41873424--41873488 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 24
41873414 GCCGGTTAGG
* * *
41873424 TTCCCGGCGGTTCTCCGGTGATCT
1 TTCCCGGCGGTGCTCCGGCGAGCT
*
41873448 ATT-CCGGAGGTGCTCCGGCGAGCT
1 -TTCCCGGCGGTGCTCCGGCGAGCT
41873472 TTCCCGGCGGTGCTCCG
1 TTCCCGGCGGTGCTCCG
41873489 ATGAGTCATC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
23 2 0.06
24 30 0.88
25 2 0.06
ACGTcount: A:0.06, C:0.34, G:0.34, T:0.26
Consensus pattern (24 bp):
TTCCCGGCGGTGCTCCGGCGAGCT
Found at i:41873500 original size:24 final size:25
Alignment explanation
Indices: 41873425--41873500 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 25
41873415 CCGGTTAGGT
*
41873425 TCCCGGCGGTTCTCCGGTGA-TCTA
1 TCCCGGCGGTGCTCCGGTGAGTCTA
* * * *
41873449 TTCCGGAGGTGCTCCGGCGAG-CTT
1 TCCCGGCGGTGCTCCGGTGAGTCTA
*
41873473 TCCCGGCGGTGCTCCGATGAGTC-A
1 TCCCGGCGGTGCTCCGGTGAGTCTA
41873497 TCCC
1 TCCC
41873501 AGAATATAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
24 39 0.98
25 1 0.03
ACGTcount: A:0.09, C:0.34, G:0.32, T:0.25
Consensus pattern (25 bp):
TCCCGGCGGTGCTCCGGTGAGTCTA
Found at i:41873790 original size:43 final size:43
Alignment explanation
Indices: 41873747--41874737 Score: 930
Period size: 43 Copynumber: 23.6 Consensus size: 43
41873737 CTCGGATGTA
* * * * *
41873747 CGGGAGCCTCGGACACCATCGGCAAACTAGGCCATTGGTTGTA
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
** * * *
41873790 CCAGAGCCT-GGAGCACCATCGGTAACCTAGGCCTTTCGTCGTG
1 CGGGAGCCTCGG-GCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
41873833 -GGAGAACCTCGGGCATCATCGGCAACCTAGGGCCC-TGGTCATG
1 CGG-GAGCCTCGGGCACCATCGGCAACCTA-GGCCCTTGGTCGTG
*
41873876 CGGCAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* *
41873919 CGAGAGCCTCGGG-ACCATCGGCAACTTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
41873961 CAGGAGCCTCGGGCACCATCGG-GACCTAGGCCCTTTGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
41874003 CGGGAGCCACGGGCACCA-CGG-TACCTAGGCTCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * * * * *
41874044 CGAGAGCCTCGAGTACCATTGGCAATCTAGGCCCTTAGTCATG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
41874087 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * ** * * *
41874130 CGGGACCCTCGAGCACCATCGG-TGCCTAGACCCTTGGTAGTA
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * * *
41874172 CAGGAGCTTCGGGCACCACCGGC-GCCTTAGTG--CTTGGAT-TTG
1 CGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TCGTG
* * * *
41874214 CGAGAGCCTCGGGCACCATCAGCAACCTAGGCCCCTGGTCTTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
41874257 CTGGAGCCTCGGGCACCATTGGCAACCTAGGCCCCTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* *
41874300 CGAGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * *
41874342 CGGGAGCCTCGGGCACTATCGGTAACCTA-GTCTTCTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTG
* * *
41874385 CGGAAGCCTCAGGCACCATCGGCAACCTAGGCCTTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* *
41874428 CGAGAGCCTCGAG-ACCATCGGC-ACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * * *** *
41874469 TGGGAGCCTCGAGCACCACCGAC-ACCGT-GGTGGTTAGAT-GTG
1 CGGGAGCCTCGGGCACCATCGGCAACC-TAGGCCCTT-GGTCGTG
* **
41874511 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCAGTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
*
41874554 CGGGAGCCTCGGGCACCATCGGTAACCTAGG-CCTTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * **
41874596 CGAGAGCCTCGGGCACCATCGAC-ACCTTGGTGCTTGGAT-GTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTG
* *
41874638 CGGGAGCCTC-GG-----T----ATCCTAGGCCCTTGGTCGTC
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * *
41874671 CAGGAGCCTCGGGCACCATAGGTAACCTAGGCCCCTGGTCGTG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
41874714 CGGGAGCCTCGGGCACCATCGGCA
1 CGGGAGCCTCGGGCACCATCGGCA
41874738 CCTTGGTGCC
Statistics
Matches: 771, Mismatches: 137, Indels: 80
0.78 0.14 0.08
Matches are distributed among these distances:
32 1 0.00
33 21 0.03
34 2 0.00
36 1 0.00
39 1 0.00
41 72 0.09
42 279 0.36
43 382 0.50
44 12 0.02
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (43 bp):
CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
Found at i:41873843 original size:86 final size:83
Alignment explanation
Indices: 41873747--41874616 Score: 578
Period size: 85 Copynumber: 10.3 Consensus size: 83
41873737 CTCGGATGTA
* * *
41873747 CGGGAGCCTCGGACACCATCGGCAAACTAGGCCATTGGTTGTACCAGAGCCTGGAGCACCATCGG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCC-TTGGTCGT-CCAGAGCCTGGAGCACCATCGG
* *
41873812 TAACCTAGGCCTTTCGTCGTG
64 CAACCTAGGCCCTT-GTCGTG
* * * * * *
41873833 -GGAGAACCTCGGGCATCATCGGCAACCTAGGGCCCTGGTCATGCGGCAGCCTCGG-GCACCATC
1 CGG-GAGCCTCGGGCACCATCGGCAACCTA-GGCCTTGGTCGTCCAG-AGCCT-GGAGCACCATC
41873896 GGCAACCTAGGCCCTTGGTCGTG
62 GGCAACCTAGGCCCTT-GTCGTG
* * *
41873919 CGAGAGCCTCGGG-ACCATCGGCAACTTAGGCCCTTGGTCGTGCAGGAGCCTCGG-GCACCATCG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGTCCA-GAGCCT-GGAGCACCATCG
*
41873982 G-GACCTAGGCCCTTTGTCGTG
63 GCAACCTAGGCCC-TTGTCGTG
* * * * * *
41874003 CGGGAGCCACGGGCACCA-CGG-TACCTAGGCTCTTGGTCGTGCGAGAGCCTCGAGTACCATTGG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGC-CTTGGTCGT-CCAGAGCCTGGAGCACCATCGG
* *
41874066 CAATCTAGGCCCTTAGTCATG
64 CAACCTAGGCCCTT-GTCGTG
** * *
41874087 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGACCCTCGAGCACCATCGG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGT-CCAGAGCCTGGAGCACCATCGG
** * * *
41874152 -TGCCTAGACCCTTGGTAGTA
64 CAACCTAGGCCCTT-GTCGTG
* * * * * *
41874172 CAGGAGCTTCGGGCACCACCGGC-GCCTTAGTG-CTTGGAT-TTGCGAGAGCCTCGG-GCACCAT
1 CGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCTTGG-TCGT-CCAGAGCCT-GGAGCACCAT
* * *
41874233 CAGCAACCTAGGCCCCTGGTCTTG
61 CGGCAACCTAGG-CCCTTGTCGTG
* * * *
41874257 CTGGAGCCTCGGGCACCATTGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGG-G-ACCATCG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGT-CCAGAGCCT-GGAGCACCATCG
*
41874320 GCAACCTAGGCCCCTGGTCGTG
63 GCAACCTAGG-CCCTTGTCGTG
* * * * * * *
41874342 CGGGAGCCTCGGGCACTATCGGTAACCTAGTCTTCTGGTCGTGCGGAAGCCT-CAGGCACCATCG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCT-TGGTCGTCCAG-AGCCTGGA-GCACCATCG
*
41874406 GCAACCTAGGCCTTTGGTCGTG
63 GCAACCTAGGCCCTT-GTCGTG
* * *** * * *
41874428 CGAGAGCCTCGAG-ACCATCGGC-ACCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCACCACCGA
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGGTCGT-CCAGAGCCTGGAGCACCATCGG
***
41874491 C-ACCGT-GGTGGTTAGAT-GTG
64 CAACC-TAGGCCCTT-G-TCGTG
* * **
41874511 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCAGTGGTCGTGCGGGAGCCTCGG-GCACCATCG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCC-TTGGTCGT-CCAGAGCCT-GGAGCACCATCG
*
41874575 GTAACCTAGG-CCTTGGTCGTG
63 GCAACCTAGGCCCTT-GTCGTG
*
41874596 CGAGAGCCTCGGGCACCATCG
1 CGGGAGCCTCGGGCACCATCG
41874617 ACACCTTGGT
Statistics
Matches: 626, Mismatches: 113, Indels: 91
0.75 0.14 0.11
Matches are distributed among these distances:
82 2 0.00
83 52 0.08
84 133 0.21
85 260 0.42
86 171 0.27
87 8 0.01
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.18
Consensus pattern (83 bp):
CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCTTGGTCGTCCAGAGCCTGGAGCACCATCGGCA
ACCTAGGCCCTTGTCGTG
Found at i:41873865 original size:19 final size:19
Alignment explanation
Indices: 41873837--41873906 Score: 50
Period size: 19 Copynumber: 3.4 Consensus size: 19
41873827 GTCGTGGGAG
*
41873837 AACCTCGGGCATCATCGGC
1 AACCTAGGGCATCATCGGC
*
41873856 AACCTAGGGCCCTGGTCATGCGGC
1 AACCTAGGG--C--ATCAT-CGGC
* * *
41873880 AGCCTCGGGCACCATCGGC
1 AACCTAGGGCATCATCGGC
41873899 AACCTAGG
1 AACCTAGG
41873907 CCCTTGGTCG
Statistics
Matches: 38, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 18 0.47
20 3 0.08
21 1 0.03
22 1 0.03
23 4 0.11
24 11 0.29
ACGTcount: A:0.20, C:0.36, G:0.30, T:0.14
Consensus pattern (19 bp):
AACCTAGGGCATCATCGGC
Found at i:41874645 original size:169 final size:169
Alignment explanation
Indices: 41873839--41874648 Score: 519
Period size: 169 Copynumber: 4.8 Consensus size: 169
41873829 CGTGGGAGAA
* * * * *
41873839 CCTCGGGCATCATCGGCAACCTAGGGCC-CTGGTCATGCGGCAGCCTCGGGCACCATCGGCAACC
1 CCTCGGACACCATCGGCAACCTA-GGCCACTGGTCGTGCGGAAGCCTCAGGCACCATCGGCAACC
* * * * *
41873903 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATCGGCAACTTAGGCCCTTGGTCGTGCAGGAGC
65 TAGGCCTTTGGTCGTGCGAGAGCCTCGAGACCATCGAC-ACCTAGGCCCTTGGTCGTGCGGGAGC
* * ** *** *
41873968 CTCGGGCACCATCGGGACC-TAGGCCCTTTG-TCGTGCGGGAG
129 CTCGAGCACCACCGACACCGT-GGTGGTTAGAT-GTGCGGGAG
* * * * * *
41874009 CCACGGGCACCA-CGG-TACCTAGGCTC-TTGGTCGTGC-GAGAGCCTC-GAGTACCATTGGCAA
1 CCTCGGACACCATCGGCAACCTAGGC-CACTGGTCGTGCGGA-AGCCTCAG-GCACCATCGGCAA
* * * * * * *
41874069 TCTAGGCCCTTAGTCATGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
63 CCTAGGCCTTTGGTCGTGCGAGAGCCTCGAG-ACCATCGAC-ACCTAGGCCCTTGGTCGTGCGGG
* * *** **** * * *
41874134 ACCCTCGAGCACCATCGGTGCC-TAGACCCTT-GGTAGTACAGGAG
126 AGCCTCGAGCACCACCGACACCGT-GGTGGTTAGAT-GTGCGGGAG
* * * * * * * *
41874178 CTTCGGGCACCACCGGC-GCCTTAGTG-C-TTGGAT-TTGC-GAGAGCCTCGGGCACCATCAGCA
1 CCTCGGACACCATCGGCAACC-TAG-GCCACTGG-TCGTGCGGA-AGCCTCAGGCACCATCGGCA
** * * * * *
41874238 ACCTAGGCCCCTGGTCTTGCTG-GAGCCTCGGGCACCATTGGCAACCTAGGCCCCTGGTCGTGCG
62 ACCTAGGCCTTTGGTCGTGC-GAGAGCCTCGAG-ACCATCGAC-ACCTAGGCCCTTGGTCGTGCG
* * * * **** *
41874302 AGAGCCTCG-GGACCATCGGCAACC-TAGGCCCCT-GGTCGTGCGGGAG
124 GGAGCCTCGAGCACCACCGAC-ACCGT-GGTGGTTAGAT-GTGCGGGAG
* * * * **
41874348 CCTCGGGCACTATCGGTAACCTAGTCTTCTGGTCGTGCGGAAGCCTCAGGCACCATCGGCAACCT
1 CCTCGGACACCATCGGCAACCTAGGCCACTGGTCGTGCGGAAGCCTCAGGCACCATCGGCAACCT
* *
41874413 AGGCCTTTGGTCGTGCGAGAGCCTCGAGACCATCGGCACCTAGGCCCTTGGTCGTGTGGGAGCCT
66 AGGCCTTTGGTCGTGCGAGAGCCTCGAGACCATCGACACCTAGGCCCTTGGTCGTGCGGGAGCCT
41874478 CGAGCACCACCGACACCGTGGTGGTTAGATGTGCGGGAG
131 CGAGCACCACCGACACCGTGGTGGTTAGATGTGCGGGAG
* * * *
41874517 CCTCGGACACCATCGGCAACCTAGGCCAGTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCT
1 CCTCGGACACCATCGGCAACCTAGGCCACTGGTCGTGCGGAAGCCTCAGGCACCATCGGCAACCT
* * **
41874582 AGGCC-TTGGTCGTGCGAGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGAT-GTGCGGGAGC
66 AGGCCTTTGGTCGTGCGAGAGCCTCGAG-ACCATCGACACCTAGGCCCTTGG-TCGTGCGGGAGC
41874645 CTCG
129 CTCG
41874649 GTATCCTAGG
Statistics
Matches: 528, Mismatches: 88, Indels: 49
0.79 0.13 0.07
Matches are distributed among these distances:
167 5 0.01
168 80 0.15
169 221 0.42
170 161 0.30
171 58 0.11
172 3 0.01
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (169 bp):
CCTCGGACACCATCGGCAACCTAGGCCACTGGTCGTGCGGAAGCCTCAGGCACCATCGGCAACCT
AGGCCTTTGGTCGTGCGAGAGCCTCGAGACCATCGACACCTAGGCCCTTGGTCGTGCGGGAGCCT
CGAGCACCACCGACACCGTGGTGGTTAGATGTGCGGGAG
Found at i:41874787 original size:43 final size:42
Alignment explanation
Indices: 41874712--41874817 Score: 113
Period size: 43 Copynumber: 2.5 Consensus size: 42
41874702 CCCCTGGTCG
* *
41874712 TGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGATA
1 TGCGGGAGCCTCGAGCACCATCGGCACATTGGTG-CTCGGATA
* * * * *
41874755 TGCGGGAGCCTCGAGCAGCATTGGCGCATTGGTGCTTGGATG
1 TGCGGGAGCCTCGAGCACCATCGGCACATTGGTGCTCGGATA
* * *
41874797 TGCGTGAGCCCCGAACACCAT
1 TGCGGGAGCCTCGAGCACCAT
41874818 AGGAAACCTA
Statistics
Matches: 52, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 23 0.44
43 29 0.56
ACGTcount: A:0.16, C:0.29, G:0.35, T:0.20
Consensus pattern (42 bp):
TGCGGGAGCCTCGAGCACCATCGGCACATTGGTGCTCGGATA
Found at i:41881508 original size:5 final size:5
Alignment explanation
Indices: 41881474--41881540 Score: 97
Period size: 5 Copynumber: 14.2 Consensus size: 5
41881464 TACCGTGCTG
*
41881474 TGCCG TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA T--CA TGCCA TGCCA
1 TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA
41881522 TGCCA TGCCA T--CA TGCCA T
1 TGCCA TGCCA TGCCA TGCCA T
41881541 ACTTCATTCG
Statistics
Matches: 57, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
3 6 0.11
5 51 0.89
ACGTcount: A:0.19, C:0.39, G:0.19, T:0.22
Consensus pattern (5 bp):
TGCCA
Found at i:41881517 original size:23 final size:23
Alignment explanation
Indices: 41881487--41881540 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
41881477 CGTGCCATGC
41881487 CATGCCATGCCATGCCATGCCAT
1 CATGCCATGCCATGCCATGCCAT
41881510 CATGCCATGCCATGCCATGCCAT
1 CATGCCATGCCATGCCATGCCAT
41881533 CATGCCAT
1 CATGCCAT
41881541 ACTTCATTCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.22, C:0.39, G:0.17, T:0.22
Consensus pattern (23 bp):
CATGCCATGCCATGCCATGCCAT
Found at i:41882317 original size:58 final size:58
Alignment explanation
Indices: 41882222--41882332 Score: 168
Period size: 58 Copynumber: 1.9 Consensus size: 58
41882212 CCCAACCCTA
* *
41882222 AAAGATAGAATTCAGGTACCGTTACATGTTCGGTACCCAACAATGAATGAATCGCCCC
1 AAAGATAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCGCCCC
* * * *
41882280 AAAGGTAGAATTCAGATACCGTTGCATGTCCGGTACCCCACAATGGATGAATC
1 AAAGATAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATC
41882333 ATCCCTGTCC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 47 1.00
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (58 bp):
AAAGATAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCGCCCC
Found at i:41887738 original size:25 final size:24
Alignment explanation
Indices: 41887710--41887775 Score: 105
Period size: 25 Copynumber: 2.7 Consensus size: 24
41887700 CTAATTCAAA
41887710 ACTCACCGTTTCAATTGTTCCCACC
1 ACTCACCGTTTCAATTGTTCCCA-C
*
41887735 ACTCACCGTTTCAATTGTTTCCAC
1 ACTCACCGTTTCAATTGTTCCCAC
*
41887759 ACGCACCGTTTCAATTG
1 ACTCACCGTTTCAATTG
41887776 ATTTCACAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
24 17 0.44
25 22 0.56
ACGTcount: A:0.21, C:0.35, G:0.11, T:0.33
Consensus pattern (24 bp):
ACTCACCGTTTCAATTGTTCCCAC
Found at i:41887783 original size:24 final size:23
Alignment explanation
Indices: 41887713--41887783 Score: 88
Period size: 24 Copynumber: 2.9 Consensus size: 23
41887703 ATTCAAAACT
* *
41887713 CACCGTTTCAATTGTTCCCACCACT
1 CACCGTTTCAATTGTT-TCA-CACG
41887738 CACCGTTTCAATTGTTTCCACACG
1 CACCGTTTCAATTGTTT-CACACG
41887762 CACCGTTTCAATTGATTTCACA
1 CACCGTTTCAATTG-TTTCACA
41887784 GATATCCCGC
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
24 21 0.50
25 21 0.50
ACGTcount: A:0.23, C:0.34, G:0.10, T:0.34
Consensus pattern (23 bp):
CACCGTTTCAATTGTTTCACACG
Found at i:41891112 original size:6 final size:6
Alignment explanation
Indices: 41891079--41891157 Score: 56
Period size: 6 Copynumber: 13.3 Consensus size: 6
41891069 TGACCCCCTT
* * **
41891079 AATTAA AA-T-A AA-TAA AACTAA CATTAA AATTAA AATTAA AAAGAA
1 AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA
** *
41891124 AGATTAA AATTAAA AAGGAA GATTAA AATTAA AA
1 A-ATTAA AATT-AA AATTAA AATTAA AATTAA AA
41891158 CGAATGAGTC
Statistics
Matches: 56, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
4 4 0.07
5 4 0.07
6 40 0.71
7 8 0.14
ACGTcount: A:0.67, C:0.03, G:0.06, T:0.24
Consensus pattern (6 bp):
AATTAA
Found at i:41891131 original size:19 final size:19
Alignment explanation
Indices: 41891107--41891157 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
41891097 TAACATTAAA
41891107 ATTAAAATTAAAAAGAAAG
1 ATTAAAATTAAAAAGAAAG
*
41891126 ATTAAAATTAAAAAGGAAG
1 ATTAAAATTAAAAAGAAAG
41891145 ATTAAAATTAAAA
1 ATTAAAATTAAAA
41891158 CGAATGAGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.24
Consensus pattern (19 bp):
ATTAAAATTAAAAAGAAAG
Found at i:41897835 original size:101 final size:101
Alignment explanation
Indices: 41897611--41897828 Score: 301
Period size: 101 Copynumber: 2.1 Consensus size: 101
41897601 GTATATGGGG
* * *
41897611 CATCGACATGTGGATTCCGATATGTGATGTGCGAGTAAGACCATGGCATCGATGTGTCATTCCTA
1 CATCGAAATGT-GATTCCGATATGTGATGTGCGAGTAAGACCATGGCATCGATATGTCATTCCGA
* *
41897676 TATATGTGCGTGAGTAAGACCACGTTTAATACGTTGC
65 TATATGTGCGCGAGTAAGACCACGTTTAATACATTGC
* * * *
41897713 CATCGATATGTGATTCCGATATGTGATGTGCGAGTAAGACTATGGCATCTATATGTGATTCCGAT
1 CATCGAAATGTGATTCCGATATGTGATGTGCGAGTAAGACCATGGCATCGATATGTCATTCCGAT
* * * *
41897778 ATATGTGTGCGAGTAAGTCCACGTTTTATACATTGG
66 ATATGTGCGCGAGTAAGACCACGTTTAATACATTGC
*
41897814 CGTCGAAATGTGATT
1 CATCGAAATGTGATT
41897829 TTGATATATG
Statistics
Matches: 102, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
101 92 0.90
102 10 0.10
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.33
Consensus pattern (101 bp):
CATCGAAATGTGATTCCGATATGTGATGTGCGAGTAAGACCATGGCATCGATATGTCATTCCGAT
ATATGTGCGCGAGTAAGACCACGTTTAATACATTGC
Found at i:41898096 original size:27 final size:27
Alignment explanation
Indices: 41898058--41898112 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
41898048 AAGGTGAGTA
41898058 AGTTACTCAATATTTGTTGCAACTCAT
1 AGTTACTCAATATTTGTTGCAACTCAT
41898085 AGTTACTCAATATTTGTTGCAACTCAT
1 AGTTACTCAATATTTGTTGCAACTCAT
41898112 A
1 A
41898113 TTTGAAGCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.40
Consensus pattern (27 bp):
AGTTACTCAATATTTGTTGCAACTCAT
Found at i:41898115 original size:16 final size:17
Alignment explanation
Indices: 41898062--41898116 Score: 54
Period size: 16 Copynumber: 3.7 Consensus size: 17
41898052 TGAGTAAGTT
41898062 ACTCAATATTTGTTGCA
1 ACTCAATATTTGTTGCA
41898079 ACTC-ATA---GTT---
1 ACTCAATATTTGTTGCA
41898089 ACTCAATATTTGTTGCA
1 ACTCAATATTTGTTGCA
41898106 ACTC-ATATTTG
1 ACTCAATATTTG
41898117 AAGCAAAGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 15
0.67 0.00 0.33
Matches are distributed among these distances:
10 4 0.13
11 3 0.10
13 3 0.10
14 3 0.10
16 10 0.32
17 8 0.26
ACGTcount: A:0.29, C:0.18, G:0.11, T:0.42
Consensus pattern (17 bp):
ACTCAATATTTGTTGCA
Found at i:41900302 original size:87 final size:87
Alignment explanation
Indices: 41900201--41900372 Score: 213
Period size: 87 Copynumber: 2.0 Consensus size: 87
41900191 TGACAGTATA
* * * * * * *
41900201 TTTTCTTCGATTTATCCGATGATGCACTGTGTGTGCCAGCATATTTTC-TTCAGTTTATTCGATG
1 TTTTCTTCGATTTATCCAATGATGCACTATATGTGCCAGCATA-TATCATTCAGTTTATCCAACG
* *
41900265 ATGCACTATGTGTGCTAGTATTT
65 ATGCACTATATATGCTAGTATTT
* *
41900288 TTTTCTTC-AGTTTATCCAATGATGCACTATATGTTCCAGCATATATCATTTAGTTTATCCAACG
1 TTTTCTTCGA-TTTATCCAATGATGCACTATATGTGCCAGCATATATCATTCAGTTTATCCAACG
41900352 ATGCACTATATATGCTAGTAT
65 ATGCACTATATATGCTAGTAT
41900373 AGATACTTTG
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
86 4 0.06
87 68 0.94
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.43
Consensus pattern (87 bp):
TTTTCTTCGATTTATCCAATGATGCACTATATGTGCCAGCATATATCATTCAGTTTATCCAACGA
TGCACTATATATGCTAGTATTT
Found at i:41900310 original size:44 final size:43
Alignment explanation
Indices: 41900188--41900360 Score: 179
Period size: 43 Copynumber: 4.0 Consensus size: 43
41900178 GGGTGTTACA
* * *
41900188 GTGTGACAGTATATTTTCTTC-GATTTATCCGATGATGCACTGT
1 GTGTGCCAGCATATTTTCTTCAG-TTTATCCGATGATGCACTAT
*
41900231 GTGTGCCAGCATATTTTCTTCAGTTTATTCGATGATGCACTAT
1 GTGTGCCAGCATATTTTCTTCAGTTTATCCGATGATGCACTAT
* * * *
41900274 GTGTGCTAGTATTTTTTTCTTCAGTTTATCCAATGATGCACTAT
1 GTGTGCCAGCA-TATTTTCTTCAGTTTATCCGATGATGCACTAT
* * * * * *
41900318 ATGTTCCAGCATA-TATCATTTAGTTTATCCAACGATGCACTAT
1 GTGTGCCAGCATATTTTC-TTCAGTTTATCCGATGATGCACTAT
41900361 ATATGCTAGT
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
42 3 0.03
43 70 0.64
44 37 0.34
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.42
Consensus pattern (43 bp):
GTGTGCCAGCATATTTTCTTCAGTTTATCCGATGATGCACTAT
Found at i:41900387 original size:43 final size:43
Alignment explanation
Indices: 41900296--41900440 Score: 157
Period size: 43 Copynumber: 3.4 Consensus size: 43
41900286 TTTTTTCTTC
* * * * *
41900296 AGTTTATCCAATGATGCACTATATGTTCCAGCATATAT-CATTT
1 AGTTTATCCAATGATGCACTATATATGCTAGTATAGATAC-TTT
*
41900339 AGTTTATCCAACGATGCACTATATATGCTAGTATAGATACTTT
1 AGTTTATCCAATGATGCACTATATATGCTAGTATAGATACTTT
* *** * *
41900382 GGTTTATTTGATGATGCACTGTATTTGCTAGTATAGATACTTT
1 AGTTTATCCAATGATGCACTATATATGCTAGTATAGATACTTT
*
41900425 AGTTTATCCGATGATG
1 AGTTTATCCAATGATG
41900441 AGATGCTTCA
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
43 84 0.99
44 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (43 bp):
AGTTTATCCAATGATGCACTATATATGCTAGTATAGATACTTT
Found at i:41900530 original size:43 final size:43
Alignment explanation
Indices: 41900441--41900553 Score: 131
Period size: 43 Copynumber: 2.6 Consensus size: 43
41900431 TCCGATGATG
* * * * * *
41900441 AGATGCTTCAATTTATCCGATGATGAACTGTATGTGCCAGTAT
1 AGATACTTCAATTTATCTGATTATGCATTGTATGAGCCAGTAT
*
41900484 AGATATTTCAGA-TTAT-TCGATTATGCATTGTATGAGCCAGTAT
1 AGATACTTCA-ATTTATCT-GATTATGCATTGTATGAGCCAGTAT
41900527 AGATACTTCAATTTATCTGATTATGCA
1 AGATACTTCAATTTATCTGATTATGCA
41900554 CTATATGTGT
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
42 1 0.02
43 55 0.95
44 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (43 bp):
AGATACTTCAATTTATCTGATTATGCATTGTATGAGCCAGTAT
Found at i:41904628 original size:47 final size:47
Alignment explanation
Indices: 41904556--41904686 Score: 181
Period size: 47 Copynumber: 2.8 Consensus size: 47
41904546 TACAATTGAT
*
41904556 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATCTCA
1 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCTCA
* * ** *
41904603 GAGTACCTAAACCATGGCCTGTAGCCAAATCAAGGTAACTCCTCTCA
1 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCTCA
* * *
41904650 AAATACCTATATCATGGCCCATAGCCAAATCTAGGTA
1 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTA
41904687 TTATTCGTAC
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCTCA
Found at i:41905680 original size:26 final size:26
Alignment explanation
Indices: 41905650--41905701 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
41905640 CAAATTAGCT
41905650 TTATTTAAAACCATTTAAAAACATTC
1 TTATTTAAAACCATTTAAAAACATTC
41905676 TTATTTAAAACCATTTAAAAACATTC
1 TTATTTAAAACCATTTAAAAACATTC
41905702 ATTTAATGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (26 bp):
TTATTTAAAACCATTTAAAAACATTC
Found at i:41921275 original size:15 final size:15
Alignment explanation
Indices: 41921250--41921285 Score: 63
Period size: 15 Copynumber: 2.3 Consensus size: 15
41921240 TAAGGTCACA
41921250 CTGTAACACCCCTTAC
1 CTGT-ACACCCCTTAC
41921266 CTGTACACCCCTTAC
1 CTGTACACCCCTTAC
41921281 CTGTA
1 CTGTA
41921286 TCTGATGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.22, C:0.42, G:0.08, T:0.28
Consensus pattern (15 bp):
CTGTACACCCCTTAC
Found at i:41923043 original size:45 final size:45
Alignment explanation
Indices: 41922988--41923073 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
41922978 CCAAAACATG
* * *
41922988 TGTCATATATATCACGAGCTCAGACCACAACTCAATGAGTTCAAA
1 TGTCACATATATCACGAACTCAAACCACAACTCAATGAGTTCAAA
* *
41923033 TGTCACATATATCATGAATTCAAACCACAACTCAATGAGTT
1 TGTCACATATATCACGAACTCAAACCACAACTCAATGAGTT
41923074 TAGATCACAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAAACCACAACTCAATGAGTTCAAA
Found at i:41926690 original size:18 final size:18
Alignment explanation
Indices: 41926663--41926705 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
41926653 TGTTAATTCA
41926663 AACATATAATAAATTAAC
1 AACATATAATAAATTAAC
* *
41926681 AACATTTAATATATTAAC
1 AACATATAATAAATTAAC
*
41926699 TACATAT
1 AACATAT
41926706 TATTATCAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (18 bp):
AACATATAATAAATTAAC
Found at i:41929477 original size:42 final size:42
Alignment explanation
Indices: 41929418--41929530 Score: 138
Period size: 43 Copynumber: 2.7 Consensus size: 42
41929408 CTAAGACAAT
* * **
41929418 GTGTAAGACCATATCTGGGTTATGGCCTCAATATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCAATATGAGATCCC
* *
41929460 GTGTAAGACCATATCTGGGCTATTGGCATCGATATGAGATCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCAATATGAGATCCC
*
41929503 ATGTAA-ATCCATATCTGGGATATGGCAT
1 GTGTAAGA-CCATATCTGGGATATGGCAT
41929531 TGGTATGGTA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 28 0.45
43 34 0.55
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCAATATGAGATCCC
Found at i:41933363 original size:43 final size:43
Alignment explanation
Indices: 41933252--41933366 Score: 185
Period size: 43 Copynumber: 2.7 Consensus size: 43
41933242 AAAGCACCAT
*
41933252 TAAAGAACGTGACCTTTAGCAGCGCCTTTCACACAAATGCCGC
1 TAAAGAACGTGACCTTTAGCAGCGCTTTTCACACAAATGCCGC
* * * *
41933295 TAAAAAAGGTGACCTTTAGCAGCGCTTTTCATACAAATGTCGC
1 TAAAGAACGTGACCTTTAGCAGCGCTTTTCACACAAATGCCGC
41933338 TAAAGAACGTGACCTTTAGCAGCGCTTTT
1 TAAAGAACGTGACCTTTAGCAGCGCTTTT
41933367 ACATGAACGT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.26
Consensus pattern (43 bp):
TAAAGAACGTGACCTTTAGCAGCGCTTTTCACACAAATGCCGC
Found at i:41939860 original size:40 final size:40
Alignment explanation
Indices: 41939783--41940000 Score: 350
Period size: 40 Copynumber: 5.5 Consensus size: 40
41939773 AACCCGAGTA
* *
41939783 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
41939822 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
41939862 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
41939902 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
41939942 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
41939982 CCTTCTAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
41940001 TTATCATCCG
Statistics
Matches: 167, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
39 14 0.08
40 153 0.92
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:41945600 original size:13 final size:14
Alignment explanation
Indices: 41945574--41945602 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
41945564 ACTAACGACG
41945574 AATTAAACCATTAT
1 AATTAAACCATTAT
41945588 AATTAAA-CATTAT
1 AATTAAACCATTAT
41945601 AA
1 AA
41945603 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:41949650 original size:23 final size:23
Alignment explanation
Indices: 41949623--41949670 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
41949613 AGAATCCGCA
41949623 GGATGCCTTAATAATCCATCATC
1 GGATGCCTTAATAATCCATCATC
41949646 GGATGCCTTAATAATCCATCATC
1 GGATGCCTTAATAATCCATCATC
41949669 GG
1 GG
41949671 TTCGTTGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (23 bp):
GGATGCCTTAATAATCCATCATC
Found at i:41950701 original size:9 final size:9
Alignment explanation
Indices: 41950687--41950797 Score: 84
Period size: 9 Copynumber: 12.0 Consensus size: 9
41950677 TAAGTATAAT
41950687 TAAGTTATG
1 TAAGTTATG
41950696 TAAGTTATG
1 TAAGTTATG
* * *
41950705 ATATGATATA
1 -TAAGTTATG
*
41950715 TATATTTATG
1 TA-AGTTATG
41950725 T-A-TTATG
1 TAAGTTATG
41950732 TAAGTTATG
1 TAAGTTATG
* *
41950741 ATATGATATATA
1 -TAAG-T-TATG
41950753 TAAGTTAT-
1 TAAGTTATG
41950761 TAAGTTATG
1 TAAGTTATG
41950770 TAAGTTATG
1 TAAGTTATG
41950779 TAAGTTATG
1 TAAGTTATG
*
41950788 ATATGTTATG
1 -TAAGTTATG
41950798 ATATATACAG
Statistics
Matches: 82, Mismatches: 11, Indels: 17
0.75 0.10 0.15
Matches are distributed among these distances:
7 6 0.07
8 10 0.12
9 37 0.45
10 22 0.27
11 4 0.05
12 3 0.04
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:41950733 original size:36 final size:38
Alignment explanation
Indices: 41950685--41950778 Score: 149
Period size: 36 Copynumber: 2.5 Consensus size: 38
41950675 TGTAAGTATA
*
41950685 ATTAAGTTATGTAAGTTATGATATGATATATAT-ATTT
1 ATTAAGTTATGTAAGTTATGATATGATATATATAAGTT
41950722 ATGT-A-TTATGTAAGTTATGATATGATATATATAAGTT
1 AT-TAAGTTATGTAAGTTATGATATGATATATATAAGTT
41950759 ATTAAGTTATGTAAGTTATG
1 ATTAAGTTATGTAAGTTATG
41950779 TAAGTTATGA
Statistics
Matches: 52, Mismatches: 1, Indels: 7
0.87 0.02 0.12
Matches are distributed among these distances:
36 28 0.54
37 9 0.17
38 15 0.29
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (38 bp):
ATTAAGTTATGTAAGTTATGATATGATATATATAAGTT
Found at i:41955781 original size:39 final size:39
Alignment explanation
Indices: 41955731--41956027 Score: 389
Period size: 39 Copynumber: 7.6 Consensus size: 39
41955721 ATAATGGTGA
* *
41955731 ATTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * *
41955770 GTTATATCCGGGCTAAGTCCCAAAGGAATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* ** *
41955809 TTTATATCCGGGCTAAGTCCCGAAGAAATTCATGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * *
41955848 ATTATATCCGGGCTAAGTCCTGAAGGAATTCGTACTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
41955887 ATTATATCCGGGCTAAGTCCTGAAGGCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * *
41955926 GTTATATCCGGGCTAAGTCCCGAAAGCATTCGTGCTGAT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
41955965 ATTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGT
1 ATTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGT
41956004 ATTATATCCGGGCTTAAAGTCCCG
1 ATTATATCCGGGC-T-AAGTCCCG
41956028 CATGCTTTGT
Statistics
Matches: 229, Mismatches: 27, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
39 208 0.91
40 21 0.09
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
Found at i:41958267 original size:43 final size:43
Alignment explanation
Indices: 41958215--41958316 Score: 159
Period size: 43 Copynumber: 2.4 Consensus size: 43
41958205 AGTTTAATCT
* *
41958215 ATTGGCACTAAGTTTGCGATACAATCATATCTTCGGCTAATTA
1 ATTGGCACTAAGTGTGCGATACAATCATAGCTTCGGCTAATTA
* *
41958258 ATTGGCACTAAGTGTGCGATACAATTATAGCTTCGGTTAATTA
1 ATTGGCACTAAGTGTGCGATACAATCATAGCTTCGGCTAATTA
*
41958301 ATTAGCACTAAGTGTG
1 ATTGGCACTAAGTGTG
41958317 TGAGTTTATT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (43 bp):
ATTGGCACTAAGTGTGCGATACAATCATAGCTTCGGCTAATTA
Found at i:41960297 original size:18 final size:17
Alignment explanation
Indices: 41960245--41960295 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 17
41960235 AACAGATGGG
41960245 TTTGATTTGGGGAAAAT
1 TTTGATTTGGGGAAAAT
41960262 TTAATG-TTTAGGGG-AAAT
1 TT--TGATTT-GGGGAAAAT
41960280 TTTGATTTGGGGAAAA
1 TTTGATTTGGGGAAAA
41960296 ATAAGGGGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
16 6 0.21
17 8 0.28
18 9 0.31
19 6 0.21
ACGTcount: A:0.31, C:0.00, G:0.29, T:0.39
Consensus pattern (17 bp):
TTTGATTTGGGGAAAAT
Found at i:41960568 original size:40 final size:41
Alignment explanation
Indices: 41960444--41960568 Score: 180
Period size: 41 Copynumber: 3.1 Consensus size: 41
41960434 GCACCGCTAG
* * * *
41960444 TTCTCGATCTTTAGCGGCACTTTTCAAAAAAGCGACGCTAG
1 TTCTCGATCTTTAGCGGCATTTTTCAAAAAAGCGCCACTAA
* *
41960485 TTCTCGATCTTTAGCAGCGTTTTTCAAAAAAGCGCCACTAA
1 TTCTCGATCTTTAGCGGCATTTTTCAAAAAAGCGCCACTAA
*
41960526 TTCTCGATCTTTAGCGGCATTTTTC-AGAAAGCGCCACTAA
1 TTCTCGATCTTTAGCGGCATTTTTCAAAAAAGCGCCACTAA
41960566 TTC
1 TTC
41960569 CACTAGAGAC
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 17 0.23
41 58 0.77
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (41 bp):
TTCTCGATCTTTAGCGGCATTTTTCAAAAAAGCGCCACTAA
Found at i:41960957 original size:22 final size:21
Alignment explanation
Indices: 41960911--41960979 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 21
41960901 TTTTGTCATG
* *
41960911 TAACCCTTAAACCTTAATACCC
1 TAACCCTTAAACCATAA-ACAC
41960933 TAACCCTTAAAACCATAAACAC
1 TAACCCTT-AAACCATAAACAC
*
41960955 TAAGACCC-TAAACCCTAAACAC
1 T-A-ACCCTTAAACCATAAACAC
41960977 TAA
1 TAA
41960980 ATCTCAAACC
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
20 1 0.02
21 1 0.02
22 25 0.61
23 10 0.24
24 4 0.10
ACGTcount: A:0.45, C:0.33, G:0.01, T:0.20
Consensus pattern (21 bp):
TAACCCTTAAACCATAAACAC
Found at i:41960965 original size:8 final size:7
Alignment explanation
Indices: 41960912--41960980 Score: 50
Period size: 7 Copynumber: 9.3 Consensus size: 7
41960902 TTTGTCATGT
41960912 AACCCTTA
1 AACCC-TA
*
41960920 AACCTTA
1 AACCCTA
41960927 ATACCCT-
1 A-ACCCTA
41960934 AACCCTTAA
1 AACCC-T-A
*
41960943 AACCATA
1 AACCCTA
*
41960950 AACACTA
1 AACCCTA
41960957 AGACCCTA
1 A-ACCCTA
41960965 AACCCTA
1 AACCCTA
*
41960972 AACACTA
1 AACCCTA
41960979 AA
1 AA
41960981 TCTCAAACCC
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
6 4 0.08
7 26 0.53
8 15 0.31
9 4 0.08
ACGTcount: A:0.46, C:0.33, G:0.01, T:0.19
Consensus pattern (7 bp):
AACCCTA
Found at i:41960972 original size:15 final size:15
Alignment explanation
Indices: 41960912--41960973 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
41960902 TTTGTCATGT
*
41960912 AACCCTTAAACCTTAA
1 AACCC-TAAACCCTAA
*
41960928 TACCCT-AACCCTTAA
1 AACCCTAAACCC-TAA
* *
41960943 AACCATAAACACTAA
1 AACCCTAAACCCTAA
*
41960958 GACCCTAAACCCTAA
1 AACCCTAAACCCTAA
41960973 A
1 A
41960974 CACTAAATCT
Statistics
Matches: 35, Mismatches: 9, Indels: 5
0.71 0.18 0.10
Matches are distributed among these distances:
14 4 0.11
15 23 0.66
16 8 0.23
ACGTcount: A:0.45, C:0.34, G:0.02, T:0.19
Consensus pattern (15 bp):
AACCCTAAACCCTAA
Found at i:41961470 original size:18 final size:17
Alignment explanation
Indices: 41961447--41961481 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
41961437 AAAGTCAGTT
*
41961447 TCAAATATCAAAATAAAA
1 TCAAAT-TCAAAACAAAA
41961465 TCAAATTCAAAACAAAA
1 TCAAATTCAAAACAAAA
41961482 GTAAGAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.66, C:0.14, G:0.00, T:0.20
Consensus pattern (17 bp):
TCAAATTCAAAACAAAA
Found at i:41961707 original size:41 final size:41
Alignment explanation
Indices: 41961652--41961799 Score: 154
Period size: 41 Copynumber: 3.6 Consensus size: 41
41961642 TGTTTGTACG
* * * * * * *
41961652 AAAAATGCCACTATTGTTTAGTTTTTTGTGGTGTTTGGACC
1 AAAAACGCCGCTATTGCTCAGTTTTTAGCGGTGTTTGGAAC
*
41961693 AAAAACGTCGCTATTGCTCAGTTTTTAGCGGTGTTTGGAAC
1 AAAAACGCCGCTATTGCTCAGTTTTTAGCGGTGTTTGGAAC
* * *
41961734 AAAAATGCCGCTATTGCTCAGTTTTTAGCGGCGTTT-AAAC
1 AAAAACGCCGCTATTGCTCAGTTTTTAGCGGTGTTTGGAAC
** *
41961774 AAAAAATACCGTTATTGCTCAGTTTT
1 -AAAAACGCCGCTATTGCTCAGTTTT
41961800 AGTGGCATTT
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 3 0.03
41 89 0.97
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.37
Consensus pattern (41 bp):
AAAAACGCCGCTATTGCTCAGTTTTTAGCGGTGTTTGGAAC
Found at i:41963262 original size:42 final size:43
Alignment explanation
Indices: 41963185--41963265 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 43
41963175 TTACATGTAA
*
41963185 TCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACAAAG
1 TCAAATATCGATGCCACTGTCCCAGACAGGATCTTACACAAAG
* *
41963228 TCAAATA-CGATGCCGA-TGTCCCAGATATGATCTTACAC
1 TCAAATATCGATGCC-ACTGTCCCAGACAGGATCTTACAC
41963266 GTAAATCTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 26 0.76
43 8 0.24
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.23
Consensus pattern (43 bp):
TCAAATATCGATGCCACTGTCCCAGACAGGATCTTACACAAAG
Found at i:41968743 original size:16 final size:15
Alignment explanation
Indices: 41968700--41968742 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
41968690 AAGAAAATTG
*
41968700 AAAAGATGTAAAATTA
1 AAAAGATG-AAAATCA
* *
41968716 AAAGGAAGAAAATCA
1 AAAAGATGAAAATCA
41968731 AAAAGATGAAAA
1 AAAAGATGAAAA
41968743 AAATCATTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.67, C:0.02, G:0.16, T:0.14
Consensus pattern (15 bp):
AAAAGATGAAAATCA
Found at i:41970581 original size:23 final size:23
Alignment explanation
Indices: 41970554--41970606 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
41970544 TAATATCACC
41970554 TTTCATATTGCCATTACATTTCA
1 TTTCATATTGCCATTACATTTCA
41970577 TTTCATATTGCCATTACATTTCA
1 TTTCATATTGCCATTACATTTCA
41970600 TTTCATA
1 TTTCATA
41970607 ACCAAACGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.26, C:0.21, G:0.04, T:0.49
Consensus pattern (23 bp):
TTTCATATTGCCATTACATTTCA
Found at i:41971622 original size:23 final size:23
Alignment explanation
Indices: 41971596--41971639 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
41971586 AGATATTTTA
*
41971596 CAGTCAAGATGCTAGAATATATG
1 CAGTCAAGATGCCAGAATATATG
*
41971619 CAGTCAAGCTGCCAGAATATA
1 CAGTCAAGATGCCAGAATATA
41971640 GGTGATATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (23 bp):
CAGTCAAGATGCCAGAATATATG
Found at i:41979849 original size:18 final size:18
Alignment explanation
Indices: 41979826--41979863 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
41979816 AATATATATT
41979826 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
41979844 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
41979862 AA
1 AA
41979864 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:41979856 original size:13 final size:13
Alignment explanation
Indices: 41979840--41979864 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41979830 CAAGTACCCA
41979840 ACCCAACCCAATT
1 ACCCAACCCAATT
41979853 ACCCAACCCAAT
1 ACCCAACCCAAT
41979865 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:41979900 original size:6 final size:6
Alignment explanation
Indices: 41979900--41979940 Score: 73
Period size: 6 Copynumber: 6.7 Consensus size: 6
41979890 AATAAAAATA
41979900 AAAATCT AAAACT AAAACT AAAACT AAAACT AAAACT AAAA
1 AAAA-CT AAAACT AAAACT AAAACT AAAACT AAAACT AAAA
41979941 AATATATAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 30 0.88
7 4 0.12
ACGTcount: A:0.68, C:0.15, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAACT
Found at i:41979904 original size:12 final size:12
Alignment explanation
Indices: 41979889--41979941 Score: 61
Period size: 12 Copynumber: 4.2 Consensus size: 12
41979879 ATAATTTAAT
*
41979889 AAATAAAAATAA
1 AAATAAAACTAA
41979901 AAATCTAAAACTAA
1 AAA--TAAAACTAA
*
41979915 AACTAAAACTAA
1 AAATAAAACTAA
*
41979927 AACTAAAACTAA
1 AAATAAAACTAA
41979939 AAA
1 AAA
41979942 ATATATAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
12 26 0.72
14 10 0.28
ACGTcount: A:0.72, C:0.11, G:0.00, T:0.17
Consensus pattern (12 bp):
AAATAAAACTAA
Found at i:41979979 original size:9 final size:9
Alignment explanation
Indices: 41979961--41980064 Score: 113
Period size: 9 Copynumber: 11.6 Consensus size: 9
41979951 TTTATACAAA
*
41979961 TAATTTGGT
1 TAATTCGGT
41979970 TAATTCGGT
1 TAATTCGGT
41979979 TAATTCGAG-
1 TAATTCG-GT
*
41979988 TAGTTCGGT
1 TAATTCGGT
41979997 TAATTCGAG-
1 TAATTCG-GT
*
41980006 TAGTTCGGT
1 TAATTCGGT
*
41980015 TAATTCGGG
1 TAATTCGGT
*
41980024 TAATTCAGT
1 TAATTCGGT
*
41980033 TAATTCGAT
1 TAATTCGGT
*
41980042 TAATTCAGT
1 TAATTCGGT
41980051 TAATTCGGT
1 TAATTCGGT
41980060 TAATT
1 TAATT
41980065 TTATACTTAT
Statistics
Matches: 78, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
8 2 0.03
9 74 0.95
10 2 0.03
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.43
Consensus pattern (9 bp):
TAATTCGGT
Found at i:41980058 original size:36 final size:36
Alignment explanation
Indices: 41979969--41980064 Score: 129
Period size: 36 Copynumber: 2.7 Consensus size: 36
41979959 AATAATTTGG
* * *
41979969 TTAATTCGGTTAATTCGAGTAGTTCGGTTAATTCGA
1 TTAATTCGGTTAATTCGGGTAATTCAGTTAATTCGA
* *
41980005 GTAGTTCGGTTAATTCGGGTAATTCAGTTAATTCGA
1 TTAATTCGGTTAATTCGGGTAATTCAGTTAATTCGA
* *
41980041 TTAATTCAGTTAATTCGGTTAATT
1 TTAATTCGGTTAATTCGGGTAATT
41980065 TTATACTTAT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.43
Consensus pattern (36 bp):
TTAATTCGGTTAATTCGGGTAATTCAGTTAATTCGA
Found at i:41988920 original size:40 final size:40
Alignment explanation
Indices: 41988857--41988937 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
41988847 TGCGGTACCT
* *
41988857 TATGGTGTGTAGGGTTGGATGGGTCGATTATATCCCCATA
1 TATGGTGTGCAGGGATGGATGGGTCGATTATATCCCCATA
* * * *
41988897 TATGGTGTGCGGGGATGGGTGGGTCGATTTTATCCCGATA
1 TATGGTGTGCAGGGATGGATGGGTCGATTATATCCCCATA
41988937 T
1 T
41988938 GGTGTGATGG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.17, C:0.12, G:0.36, T:0.35
Consensus pattern (40 bp):
TATGGTGTGCAGGGATGGATGGGTCGATTATATCCCCATA
Found at i:41993018 original size:16 final size:16
Alignment explanation
Indices: 41992987--41993026 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
41992977 TATATATGCA
41992987 AATAAA-AAAAAAGTG
1 AATAAATAAAAAAGTG
*
41993002 AATAAATAAATAAGTG
1 AATAAATAAAAAAGTG
*
41993018 AACAAATAA
1 AATAAATAA
41993027 GTGAAGAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.70, C:0.03, G:0.10, T:0.17
Consensus pattern (16 bp):
AATAAATAAAAAAGTG
Found at i:41996538 original size:25 final size:25
Alignment explanation
Indices: 41996491--41996539 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
41996481 TTATTTTTGA
* *
41996491 TAGTATATCCTGAAAGTAATATAGG
1 TAGTATATACTGAAACTAATATAGG
* *
41996516 TAGTATATACTGAGACTACTATAG
1 TAGTATATACTGAAACTAATATAG
41996540 ATAGACTGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.33
Consensus pattern (25 bp):
TAGTATATACTGAAACTAATATAGG
Found at i:42001947 original size:48 final size:48
Alignment explanation
Indices: 42001891--42002073 Score: 224
Period size: 48 Copynumber: 3.8 Consensus size: 48
42001881 TGAGTATTGG
* * * *
42001891 GATCCTGTGTATGACCATGTCTGGGATATGGCATCGGCATTAATAAGA
1 GATCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATGT
* * *
42001939 GATCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGT
1 GATCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATGT
* * * *
42001987 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTAATATGT
1 GATCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATGT
* * *
42002035 GA-GCTAGTGTAAGACCATGCCTGGGACATGGTATCGGCA
1 GATCCT-GTGTAAGACCATGTCTGGGACATGGCATCGGCA
42002074 CTGACATGAA
Statistics
Matches: 114, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
47 1 0.01
48 113 0.99
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (48 bp):
GATCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATGT
Found at i:42002027 original size:96 final size:96
Alignment explanation
Indices: 42001897--42002070 Score: 251
Period size: 96 Copynumber: 1.8 Consensus size: 96
42001887 TTGGGATCCT
* * * * *
42001897 GTGTATGACCATGTCTGGGATATGGCATCGGCATTAATAAGAGATCCT-GTGTAAGACCATGTCT
1 GTGTAAGACCATGTCTAGGACATGGCATCAGCATTAATAAGAGA-CCTAGTGTAAGACCATGCCT
42001961 GGGACATGGCATCGACGTTGATATGTGAGCCA
65 GGGACATGGCATCGACGTTGATATGTGAGCCA
* * *
42001993 GTGTAAGACCATGTCTAGGACATGGCATCAGCATTAATATGTGAGCTAGTGTAAGACCATGCCTG
1 GTGTAAGACCATGTCTAGGACATGGCATCAGCATTAATAAGAGACCTAGTGTAAGACCATGCCTG
*
42002058 GGACATGGTATCG
66 GGACATGGCATCG
42002071 GCACTGACAT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
95 2 0.03
96 66 0.97
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (96 bp):
GTGTAAGACCATGTCTAGGACATGGCATCAGCATTAATAAGAGACCTAGTGTAAGACCATGCCTG
GGACATGGCATCGACGTTGATATGTGAGCCA
Found at i:42011007 original size:25 final size:25
Alignment explanation
Indices: 42010973--42011022 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
42010963 TACCACCTGA
42010973 ATTAGAGAAGATTCATGATGTGTTC
1 ATTAGAGAAGATTCATGATGTGTTC
42010998 ATTAGAGAAGATTCATGATGTGTTC
1 ATTAGAGAAGATTCATGATGTGTTC
42011023 TATGTATCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (25 bp):
ATTAGAGAAGATTCATGATGTGTTC
Found at i:42016711 original size:17 final size:18
Alignment explanation
Indices: 42016689--42016722 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
42016679 CATTTTCGGT
42016689 CGTGTGGG-CCATATGGA
1 CGTGTGGGTCCATATGGA
42016706 CGTGTGGGTCCATATGG
1 CGTGTGGGTCCATATGG
42016723 GTTGACAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.15, C:0.18, G:0.41, T:0.26
Consensus pattern (18 bp):
CGTGTGGGTCCATATGGA
Found at i:42019704 original size:41 final size:41
Alignment explanation
Indices: 42019645--42019800 Score: 160
Period size: 41 Copynumber: 3.9 Consensus size: 41
42019635 AGAATATTTT
* *
42019645 TGAATTGCACATACGTGCCTCTTTTTGTACTTCAGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC
* * *
42019686 TGAATTGCACATATGTGCCCCTGTTTGTACTTCGGTACCCA
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC
* * * * * * *
42019727 TTAATAGCACATGCATG-CCCTGTTTATA--TGA-TACTCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC
42019764 TGAATTGCACATACGTGCCCCTGTTTAG-ACTTCAGTA
1 TGAATTGCACATACGTGCCCCTGTTT-GTACTTCAGTA
42019801 ATTCTGAATC
Statistics
Matches: 89, Mismatches: 21, Indels: 10
0.74 0.17 0.08
Matches are distributed among these distances:
37 17 0.19
38 10 0.11
40 12 0.13
41 50 0.56
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC
Found at i:42020269 original size:13 final size:13
Alignment explanation
Indices: 42020230--42020270 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
42020220 ATTTTTAAAT
42020230 TTTAGTGATAATA
1 TTTAGTGATAATA
*
42020243 TTT-CTGAT--TA
1 TTTAGTGATAATA
42020253 TTTAGTGATAATA
1 TTTAGTGATAATA
42020266 TTTAG
1 TTTAG
42020271 GAAAAATCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
10 5 0.22
11 4 0.17
12 4 0.17
13 10 0.43
ACGTcount: A:0.32, C:0.02, G:0.15, T:0.51
Consensus pattern (13 bp):
TTTAGTGATAATA
Found at i:42021538 original size:41 final size:41
Alignment explanation
Indices: 42021478--42021637 Score: 212
Period size: 41 Copynumber: 3.9 Consensus size: 41
42021468 CCTTGAGTCC
* * *
42021478 AGCAGGCTTTATGCTGGTGTATTTTATCAGGCTTTGTGCCT
1 AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGCCT
* *
42021519 GGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGTCT
1 AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGCCT
* * * * * * *
42021560 AGCAAGCTTCGTGCTGATGTAAATTATCAGGCTTTGTACCA
1 AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGCCT
42021601 AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGT
1 AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGT
42021638 TGTCGGTGTA
Statistics
Matches: 100, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 100 1.00
ACGTcount: A:0.17, C:0.17, G:0.28, T:0.38
Consensus pattern (41 bp):
AGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTGCCT
Found at i:42021650 original size:26 final size:25
Alignment explanation
Indices: 42021603--42021666 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 25
42021593 TTGTACCAAG
42021603 CAGGCTTTGTGCCGGTGTATATTAT
1 CAGGCTTTGTGCCGGTGTATATTAT
*
42021628 CAGGCTTTGTTGTCGGTGTATATTAT
1 CAGGCTTTG-TGCCGGTGTATATTAT
*
42021654 CAGGCTTTCTGCC
1 CAGGCTTTGTGCC
42021667 TAGCAGGATT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
25 12 0.34
26 23 0.66
ACGTcount: A:0.14, C:0.19, G:0.27, T:0.41
Consensus pattern (25 bp):
CAGGCTTTGTGCCGGTGTATATTAT
Found at i:42021661 original size:67 final size:67
Alignment explanation
Indices: 42021577--42021770 Score: 307
Period size: 67 Copynumber: 2.9 Consensus size: 67
42021567 TTCGTGCTGA
* * * * *
42021577 TGTAAATTATCAGGCTTTGTACCAAGCAGGCTTTGTGCCGGTGTATATTATCAGGCTTTGTTGTC
1 TGTATATTATCAGGCTTTCTGCCTAGCAGGATTTGTGCCGGTGTATATTATCAGGCTTTGTTGTC
42021642 GG
66 GG
42021644 TGTATATTATCAGGCTTTCTGCCTAGCAGGATTTGTGCCGGTGTATATTATCAGGCTTTGTTGTC
1 TGTATATTATCAGGCTTTCTGCCTAGCAGGATTTGTGCCGGTGTATATTATCAGGCTTTGTTGTC
42021709 GG
66 GG
* * * *
42021711 TGTATATTATCAAGCTTTCTGCCTAGCAGGATTTGTGTCAGTGTATATTATCAGACTTTG
1 TGTATATTATCAGGCTTTCTGCCTAGCAGGATTTGTGCCGGTGTATATTATCAGGCTTTG
42021771 CGCCTAACAG
Statistics
Matches: 118, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 118 1.00
ACGTcount: A:0.20, C:0.16, G:0.25, T:0.40
Consensus pattern (67 bp):
TGTATATTATCAGGCTTTCTGCCTAGCAGGATTTGTGCCGGTGTATATTATCAGGCTTTGTTGTC
GG
Found at i:42021704 original size:25 final size:25
Alignment explanation
Indices: 42021670--42021733 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 25
42021660 TTCTGCCTAG
*
42021670 CAGGATTTGTGCCGGTGTATATTAT
1 CAGGCTTTGTGCCGGTGTATATTAT
*
42021695 CAGGCTTTGTTGTCGGTGTATATTAT
1 CAGGCTTTG-TGCCGGTGTATATTAT
* *
42021721 CAAGCTTTCTGCC
1 CAGGCTTTGTGCC
42021734 TAGCAGGATT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
25 11 0.33
26 22 0.67
ACGTcount: A:0.17, C:0.17, G:0.25, T:0.41
Consensus pattern (25 bp):
CAGGCTTTGTGCCGGTGTATATTAT
Found at i:42021776 original size:41 final size:42
Alignment explanation
Indices: 42021695--42021781 Score: 108
Period size: 41 Copynumber: 2.1 Consensus size: 42
42021685 TGTATATTAT
* * *
42021695 CAGGCTTTGTTGTCGGTGTATATTATCAAGCTTTCTGCCTAG
1 CAGGATTTGTTGTCAGTGTATATTATCAAGCTTTCTGCCTAA
42021737 CAGGATTTG-TGTCAGTGTATATTATC-AGACTTTGC-GCCTAA
1 CAGGATTTGTTGTCAGTGTATATTATCAAG-CTTT-CTGCCTAA
42021778 CAGG
1 CAGG
42021782 CTTCTTGCTG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
40 2 0.05
41 29 0.73
42 9 0.22
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (42 bp):
CAGGATTTGTTGTCAGTGTATATTATCAAGCTTTCTGCCTAA
Found at i:42035163 original size:43 final size:43
Alignment explanation
Indices: 42035115--42035261 Score: 195
Period size: 43 Copynumber: 3.4 Consensus size: 43
42035105 GAACTCGCAT
* *
42035115 ACTTAGTGCCAATTAATTAGTTGAAGCTATAACTGTATCACAC
1 ACTTAGTGCCAATTAATTAGTCGAAGCTATAATTGTATCACAC
* * *
42035158 ACTTAGTGCTAATTAATTAGTCGACGCTATAATTGTATCAGAC
1 ACTTAGTGCCAATTAATTAGTCGAAGCTATAATTGTATCACAC
* ** * *
42035201 ACTTAGCGCCAATTAATTAAACGATGCTATAATTGTATCTCAC
1 ACTTAGTGCCAATTAATTAGTCGAAGCTATAATTGTATCACAC
*
42035244 ACTTAGTCCCAATTAATT
1 ACTTAGTGCCAATTAATT
42035262 CAACTGAACT
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 90 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (43 bp):
ACTTAGTGCCAATTAATTAGTCGAAGCTATAATTGTATCACAC
Found at i:42044287 original size:17 final size:17
Alignment explanation
Indices: 42044265--42044302 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
42044255 GACGATCAAT
42044265 TTGCGGTAGCAATG-AGC
1 TTGCGGTAGC-ATGAAGC
42044282 TTGCGGTAGCATGAAGC
1 TTGCGGTAGCATGAAGC
42044299 TTGC
1 TTGC
42044303 TACTGCGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.21, C:0.18, G:0.34, T:0.26
Consensus pattern (17 bp):
TTGCGGTAGCATGAAGC
Found at i:42044790 original size:6 final size:6
Alignment explanation
Indices: 42044757--42044821 Score: 73
Period size: 6 Copynumber: 11.2 Consensus size: 6
42044747 TGATCCCCTT
* * *
42044757 AATTAA AA-T-A AA-TAA AACTAA CATTAA AATTAA AAATAA AGATTAA
1 AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA A-ATTAA
42044803 AATTAA AATTAA AATTAA A
1 AATTAA AATTAA AATTAA A
42044822 GAAAATATAA
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
4 4 0.08
5 4 0.08
6 38 0.75
7 5 0.10
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.28
Consensus pattern (6 bp):
AATTAA
Found at i:42044807 original size:25 final size:25
Alignment explanation
Indices: 42044766--42044823 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
42044756 TAATTAAAAT
*
42044766 AAATAAA-ACTAACATTAAAATTAA
1 AAATAAAGACTAAAATTAAAATTAA
*
42044790 AAATAAAGATTAAAATTAAAATTAA
1 AAATAAAGACTAAAATTAAAATTAA
*
42044815 AATTAAAGA
1 AAATAAAGA
42044824 AAATATAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 7 0.23
25 23 0.77
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.26
Consensus pattern (25 bp):
AAATAAAGACTAAAATTAAAATTAA
Found at i:42044850 original size:6 final size:6
Alignment explanation
Indices: 42044766--42044852 Score: 50
Period size: 6 Copynumber: 14.3 Consensus size: 6
42044756 TAATTAAAAT
* * * * * * *
42044766 AAATAA AACTAA CATTAA AATTAA AAATAA AGATTAA AATTAA AATTAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA A-AATAA AAATAA AAATAA
* * * *
42044815 AATTAA AGA-AA ATATAA AAATGAG AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAAT-AA AAATAA AAATAA AA
42044853 CTAAGAAAAG
Statistics
Matches: 66, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
5 4 0.06
6 52 0.79
7 10 0.15
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (6 bp):
AAATAA
Found at i:42044859 original size:19 final size:20
Alignment explanation
Indices: 42044823--42044860 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
42044813 AAAATTAAAG
*
42044823 AAAATATAAAAATGAGAAAT
1 AAAATATAAAAATAAGAAAT
*
42044843 AAAA-ATAAAACTAAGAAA
1 AAAATATAAAAATAAGAAA
42044861 AGCTTAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (20 bp):
AAAATATAAAAATAAGAAAT
Found at i:42046447 original size:12 final size:12
Alignment explanation
Indices: 42046422--42046454 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
42046412 TAAAAGTGCT
42046422 AATGAAACAAGAA
1 AATGAAA-AAGAA
42046435 AATGAAAAAGAA
1 AATGAAAAAGAA
42046447 AA-GAAAAA
1 AATGAAAAA
42046455 AAGAATAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 6 0.30
12 7 0.35
13 7 0.35
ACGTcount: A:0.76, C:0.03, G:0.15, T:0.06
Consensus pattern (12 bp):
AATGAAAAAGAA
Found at i:42052718 original size:13 final size:13
Alignment explanation
Indices: 42052700--42052726 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
42052690 CACCATGTTC
42052700 ATTCATCTCAATA
1 ATTCATCTCAATA
42052713 ATTCATCTCAATA
1 ATTCATCTCAATA
42052726 A
1 A
42052727 CATTAGATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTCATCTCAATA
Found at i:42054450 original size:27 final size:28
Alignment explanation
Indices: 42054420--42054489 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
42054410 ATATTAAGTC
* *
42054420 CGCACACTCAGTGCTATATAATCAA-CT
1 CGCACACTTAGTGCTACATAATCAAGCT
42054447 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAGCT
42054475 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
42054490 GTACAATTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAGCT
Found at i:42062310 original size:39 final size:39
Alignment explanation
Indices: 42062265--42062346 Score: 146
Period size: 39 Copynumber: 2.1 Consensus size: 39
42062255 AAGCAAGACA
42062265 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* *
42062304 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
42062343 CTGG
1 CTGG
42062347 TAATATAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.21, C:0.24, G:0.32, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
Found at i:42083577 original size:45 final size:45
Alignment explanation
Indices: 42083501--42083662 Score: 227
Period size: 45 Copynumber: 3.6 Consensus size: 45
42083491 CGGCATTTCA
* * *
42083501 CCTGCTAGGCTC-GAGGCCTGAATAGTGTCTCACCAGCATTATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATAG
* *
42083545 CCTGCTAGGCTCAAAAGCCCGAATAGTATCTCACTAGCATTATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATAG
* * * *
42083590 CTTGCTAGGCTCAAAGGCCCAAATAATATCTCACCGGCATTATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATAG
*
42083635 CCTGCTAGGCTCAAAGGCCTGAATAGTA
1 CCTGCTAGGCTCAAAGGCCCGAATAGTA
42083663 CTGTACAATA
Statistics
Matches: 102, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
44 12 0.12
45 90 0.88
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (45 bp):
CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCAGCATTATAG
Found at i:42090057 original size:16 final size:17
Alignment explanation
Indices: 42090036--42090073 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
42090026 ATGTAACGCT
*
42090036 CCAAAAATCCCGAAA-C
1 CCAAAAATCCCAAAATC
42090052 CCAAAAATCCCAAAATC
1 CCAAAAATCCCAAAATC
42090069 CCAAA
1 CCAAA
42090074 CTTTCTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.53, C:0.37, G:0.03, T:0.08
Consensus pattern (17 bp):
CCAAAAATCCCAAAATC
Found at i:42091337 original size:8 final size:8
Alignment explanation
Indices: 42091312--42091362 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
42091302 ATGTATCGGC
*
42091312 AAAAGCTG
1 AAAAGCCG
* *
42091320 AAATGTCG
1 AAAAGCCG
42091328 AAAAGCCG
1 AAAAGCCG
*
42091336 AAAAGCTG
1 AAAAGCCG
42091344 AAATA-CCG
1 AAA-AGCCG
42091352 AAAAGCCG
1 AAAAGCCG
42091360 AAA
1 AAA
42091363 GTTTGGCTAC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
7 1 0.03
8 32 0.94
9 1 0.03
ACGTcount: A:0.51, C:0.18, G:0.22, T:0.10
Consensus pattern (8 bp):
AAAAGCCG
Found at i:42091344 original size:24 final size:24
Alignment explanation
Indices: 42091312--42091362 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
42091302 ATGTATCGGC
**
42091312 AAAAGCTGAAATGTCGAAAAGCCG
1 AAAAGCTGAAATACCGAAAAGCCG
42091336 AAAAGCTGAAATACCGAAAAGCCG
1 AAAAGCTGAAATACCGAAAAGCCG
42091360 AAA
1 AAA
42091363 GTTTGGCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.18, G:0.22, T:0.10
Consensus pattern (24 bp):
AAAAGCTGAAATACCGAAAAGCCG
Found at i:42091684 original size:28 final size:29
Alignment explanation
Indices: 42091573--42091687 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
42091563 GTGAGCATGA
*
42091573 ATATGAATGTGA-CTGGGTCTAATGGGCC
1 ATATGAATGTGATCTGGGCCTAATGGGCC
* *
42091601 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATCTGGGCCTAATGGGCC
* *
42091630 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATCTGGGCCTAATGGGCC
* *
42091659 ATATGAATATGA-CTGGGCTTAATGGGCC
1 ATATGAATGTGATCTGGGCCTAATGGGCC
42091687 A
1 A
42091688 GATACAGGTA
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 27 0.36
29 48 0.63
30 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATCTGGGCCTAATGGGCC
Found at i:42091686 original size:57 final size:58
Alignment explanation
Indices: 42091586--42091696 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 58
42091576 TGAATGTGAC
* * * *
42091586 TGGGTCTAATGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATATGATCTGGGCCTAATGGGCCAGATACAGGTGATT
* *
42091644 TGGGCCTAATGGGCCATATGAATATGA-CTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAATGGGCCATATAAATATGATCTGGGCCTAATGGGCCAGATACAGGT
42091697 ATGTGAAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 23 0.49
58 24 0.51
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (58 bp):
TGGGCCTAATGGGCCATATAAATATGATCTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:42095796 original size:15 final size:15
Alignment explanation
Indices: 42095770--42095825 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
42095760 CAAGGAAACC
42095770 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
42095785 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
*
42095800 GAATAAAGGAATCCA
1 GAATAAAGAAATCCA
42095815 GAATAAAGAAA
1 GAATAAAGAAA
42095826 CCCAAGATAC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
14 1 0.03
15 33 0.94
16 1 0.03
ACGTcount: A:0.59, C:0.11, G:0.18, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:42098912 original size:47 final size:47
Alignment explanation
Indices: 42098849--42099202 Score: 303
Period size: 47 Copynumber: 7.6 Consensus size: 47
42098839 TCCATAAGTG
42098849 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACA
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACA
* * * *
42098896 AACTCGGACTCAACTCAACGAGTTC--A-GAC-A-TTCGCA-TCCATAA
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATTTCA-CA
*
42098939 GTGAACTCGGAGTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACA
1 ---AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACA
* * * *
42098989 AACTCGGACTCAACTCAACGAGTTC--A-GAC-A-TTCGCA-TCCATAA
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATTTCA-CA
*
42099032 GTGAACTCGGAGTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACA
1 ---AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACA
* * * *
42099082 AACTCGGACTCAACTCAACGAGTTC--A-GAC-A-TTCGCA-TCCATAA
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATTTCA-CA
* *
42099125 GTGAACTCGGAGTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACG
1 ---AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACA
42099175 AACTCGGACTCAACTCAACGAGTTCGGA
1 AACTCGGACTCAACTCAACGAGTTCGGA
42099203 CATTCGCATC
Statistics
Matches: 243, Mismatches: 31, Indels: 66
0.71 0.09 0.19
Matches are distributed among these distances:
42 15 0.06
43 12 0.05
44 6 0.02
45 3 0.01
46 72 0.30
47 100 0.41
48 3 0.01
49 6 0.02
50 11 0.05
51 15 0.06
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (47 bp):
AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACA
Found at i:42098930 original size:93 final size:93
Alignment explanation
Indices: 42098803--42099251 Score: 817
Period size: 93 Copynumber: 4.8 Consensus size: 93
42098793 CCACTAAGTG
* * * * * *
42098803 AACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGAGTCAACTCAAC
42098868 GAGTTCGGATGCCTAGTTACATTTCACA
66 GAGTTCGGATGCCTAGTTACATTTCACA
42098896 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGAGTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGAGTCAACTCAAC
42098961 GAGTTCGGATGCCTAGTTACATTTCACA
66 GAGTTCGGATGCCTAGTTACATTTCACA
42098989 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGAGTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGAGTCAACTCAAC
42099054 GAGTTCGGATGCCTAGTTACATTTCACA
66 GAGTTCGGATGCCTAGTTACATTTCACA
42099082 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGAGTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGAGTCAACTCAAC
*
42099147 GAGTTCGGATGCCTAGTTACATTTCACG
66 GAGTTCGGATGCCTAGTTACATTTCACA
* *
42099175 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGAGTCAACTCAAC
42099240 GAGTTCGGATGC
66 GAGTTCGGATGC
42099252 TCAACCATCC
Statistics
Matches: 347, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 347 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGAGTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCACA
Found at i:42099706 original size:30 final size:30
Alignment explanation
Indices: 42099672--42099732 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
42099662 AAAATCATAT
* *
42099672 TTTTGCAAAATTACAGTTTTGCCCCTAAAC
1 TTTTGCAAAATTACACTTTTGCCCCAAAAC
* *
42099702 TTTTGCATATTTACACTTTTGCCCCAAAAC
1 TTTTGCAAAATTACACTTTTGCCCCAAAAC
42099732 T
1 T
42099733 CGTAAATTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACACTTTTGCCCCAAAAC
Found at i:42101578 original size:114 final size:114
Alignment explanation
Indices: 42101378--42101718 Score: 639
Period size: 114 Copynumber: 3.0 Consensus size: 114
42101368 AACAGATAAA
42101378 TTACTTGACATGATATGAGATGAAATGAATGATGTCTTGAAAAAATATAGTACGATAAGCTCATC
1 TTACTTGACATGATATGAGATGAAATGAATGATGTCTTGAAAAAATATAGTACGATAAGCTCATC
42101443 TATGCTTACTTGATGCTTATTATGAACATTTATGTAACTAACTTGTTTG
66 TATGCTTACTTGATGCTTATTATGAACATTTATGTAACTAACTTGTTTG
42101492 TTACTTGACATGATATGAGATGAAATGAATGATGTCTTGAAAAAATATAGTACGATAAGCTCATC
1 TTACTTGACATGATATGAGATGAAATGAATGATGTCTTGAAAAAATATAGTACGATAAGCTCATC
42101557 TATGCTTACTTGATGCTTATTATGAACATTTATGTAACTAACTTGTTTG
66 TATGCTTACTTGATGCTTATTATGAACATTTATGTAACTAACTTGTTTG
* *
42101606 TTACTTGACATGATATGAGATGAAATGAATGATGTCTTGAAAAAATATAGTATGATGAGCTCATC
1 TTACTTGACATGATATGAGATGAAATGAATGATGTCTTGAAAAAATATAGTACGATAAGCTCATC
* *
42101671 TATACTTGCTTGATGCTTA-TATGAACATTTATGTAACTAACTTGTTTG
66 TATGCTTACTTGATGCTTATTATGAACATTTATGTAACTAACTTGTTTG
42101719 ATTAAGTGTA
Statistics
Matches: 223, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
113 29 0.13
114 194 0.87
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (114 bp):
TTACTTGACATGATATGAGATGAAATGAATGATGTCTTGAAAAAATATAGTACGATAAGCTCATC
TATGCTTACTTGATGCTTATTATGAACATTTATGTAACTAACTTGTTTG
Found at i:42104587 original size:27 final size:27
Alignment explanation
Indices: 42104557--42104624 Score: 70
Period size: 25 Copynumber: 2.6 Consensus size: 27
42104547 TATTATTCTG
42104557 GTGGCTTTGCCACGTATT-CTGATATTA
1 GTGGCTTTGCCACGT-TTACTGATATTA
* *
42104584 GTGGC--TGTCACGTTTACTGTTATTA
1 GTGGCTTTGCCACGTTTACTGATATTA
* *
42104609 GTAGCTTTGCTACGTT
1 GTGGCTTTGCCACGTT
42104625 ACTATTAGCA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
24 2 0.06
25 19 0.58
27 12 0.36
ACGTcount: A:0.16, C:0.18, G:0.24, T:0.43
Consensus pattern (27 bp):
GTGGCTTTGCCACGTTTACTGATATTA
Found at i:42111450 original size:21 final size:21
Alignment explanation
Indices: 42111405--42111453 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
42111395 TTTTCTCACG
**
42111405 CCCGTGTGTTAGGTTACTGCA
1 CCCGTGTGTTAGGTTACCACA
*
42111426 CCCGTGTGTTAGGTTACCACT
1 CCCGTGTGTTAGGTTACCACA
42111447 CCCGTGT
1 CCCGTGT
42111454 ATTGTTGTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.12, C:0.29, G:0.27, T:0.33
Consensus pattern (21 bp):
CCCGTGTGTTAGGTTACCACA
Found at i:42114951 original size:56 final size:56
Alignment explanation
Indices: 42114884--42114994 Score: 213
Period size: 56 Copynumber: 2.0 Consensus size: 56
42114874 AACTAAGAAT
42114884 GCACAGAGAAAAGAAGTGGGGAATTGCTTTTGGGAAAATGGATTGACTTGAGACAC
1 GCACAGAGAAAAGAAGTGGGGAATTGCTTTTGGGAAAATGGATTGACTTGAGACAC
*
42114940 GCACAGAGAAAAGAATTGGGGAATTGCTTTTGGGAAAATGGATTGACTTGAGACA
1 GCACAGAGAAAAGAAGTGGGGAATTGCTTTTGGGAAAATGGATTGACTTGAGACA
42114995 ATACCTAAGG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.36, C:0.10, G:0.32, T:0.23
Consensus pattern (56 bp):
GCACAGAGAAAAGAAGTGGGGAATTGCTTTTGGGAAAATGGATTGACTTGAGACAC
Found at i:42119718 original size:40 final size:40
Alignment explanation
Indices: 42119559--42119752 Score: 178
Period size: 39 Copynumber: 4.9 Consensus size: 40
42119549 GAATTCAATC
* * * *
42119559 ACCAACACAAAGCCTACGGGACTTTAAGCCCGGATATAGT
1 ACCAGCACGAAGCCTGCGGGACTTTAAGCCCGGATATAAT
* * * * * *
42119599 ACCAGTACGAAGCCTAC-GGACCTTAAGTCTGGATATAGT
1 ACCAGCACGAAGCCTGCGGGACTTTAAGCCCGGATATAAT
* * *
42119638 ACCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAAT
1 ACCAGCACGAAGCCTGCGGGACTTTAAGCCCGGATATAAT
* *
42119677 TCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGACTTTAAGCCCGGATATAAT
* * * * *
42119717 TCTAGCA-TATAGCCTGCGGGTCTTTAAGCCTGGATA
1 ACCAGCACGA-AGCCTGCGGGACTTTAAGCCCGGATA
42119753 CACATCAAAT
Statistics
Matches: 133, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 70 0.53
40 63 0.47
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (40 bp):
ACCAGCACGAAGCCTGCGGGACTTTAAGCCCGGATATAAT
Found at i:42134451 original size:56 final size:56
Alignment explanation
Indices: 42134365--42134497 Score: 198
Period size: 56 Copynumber: 2.4 Consensus size: 56
42134355 ATGGCATCGG
*
42134365 TATATGTGTGCGAGTAAGACCAAGTTTAATACGTTGGCATCGATATGTGACT-TCAA
1 TATATGTGTGCGAGTAAGACCAAGTTTAATACGTTGGCATCAATATGTGACTGT-AA
*
42134421 TATATGTGTGCGAGTAAGACCACA-TTTAATACGTTGGCATCAATATGTGACTGTGA
1 TATATGTGTGCGAGTAAGACCA-AGTTTAATACGTTGGCATCAATATGTGACTGTAA
* *
42134477 CATATGTGTGTGAGTAAGACC
1 TATATGTGTGCGAGTAAGACC
42134498 CTATCTAGGA
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
56 69 0.97
57 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (56 bp):
TATATGTGTGCGAGTAAGACCAAGTTTAATACGTTGGCATCAATATGTGACTGTAA
Found at i:42137865 original size:14 final size:13
Alignment explanation
Indices: 42137842--42137873 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
42137832 GGGATATCAA
42137842 AACAATAATTAAG
1 AACAATAATTAAG
42137855 AACACATAATTAAG
1 AACA-ATAATTAAG
42137869 AACAA
1 AACAA
42137874 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:42140128 original size:6 final size:6
Alignment explanation
Indices: 42140067--42140108 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
42140057 CAAAAATGAT
* *
42140067 TAAAAA TAAAAT TATAAAA T-AAAC TAAAAA TAAAAA TAAAAA
1 TAAAAA TAAAAA TA-AAAA TAAAAA TAAAAA TAAAAA TAAAAA
42140109 GTAGTTGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
5 4 0.13
6 22 0.73
7 4 0.13
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.21
Consensus pattern (6 bp):
TAAAAA
Found at i:42150896 original size:72 final size:72
Alignment explanation
Indices: 42150769--42150918 Score: 264
Period size: 72 Copynumber: 2.1 Consensus size: 72
42150759 TGTGTGTTTG
* * * *
42150769 CATTGTTTTATAGATATCAAAGCTGCTGTAAGCTCGAGGATTGTTGAGGATTGTCACCACACTAT
1 CATTTTTTTATAGATATCAAAGCTGCTATAAGCTCGAGGATTGTCGAGGACTGTCACCACACTAT
42150834 CAAATAT
66 CAAATAT
42150841 CATTTTTTTATAGATATCAAAGCTGCTATAAGCTCGAGGATTGTCGAGGACTGTCACCACACTAT
1 CATTTTTTTATAGATATCAAAGCTGCTATAAGCTCGAGGATTGTCGAGGACTGTCACCACACTAT
42150906 CAAATAT
66 CAAATAT
42150913 CATTTT
1 CATTTT
42150919 GGTAACTTTT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (72 bp):
CATTTTTTTATAGATATCAAAGCTGCTATAAGCTCGAGGATTGTCGAGGACTGTCACCACACTAT
CAAATAT
Found at i:42152622 original size:54 final size:54
Alignment explanation
Indices: 42152558--42152905 Score: 210
Period size: 54 Copynumber: 6.4 Consensus size: 54
42152548 AATACTTTAG
* *
42152558 TTTACTAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGA
1 TTTA-TAAAATTACCAAAATACCCTTAGTTTGTAAAATTACTGAAATACCCTCGA
* ** * * *
42152613 TTTGTAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCTCGA
1 TTTATAAAATTACCAAAATACCCTTAG-TTTGTAAAATTACTGAAA-TACCCTCGA
* * * * * * ** *
42152667 TTTACAGAATTA--AAATTTTACCC-TCGATTTATAGAATTACT-ATTTTACCCTTGA
1 TTTATAAAATTACCAAA--ATACCCTTAG-TTTGTAAAATTACTGA-AATACCCTCGA
* * *** * ***
42152721 TTTATAGAATTACTATTTTACCCTT-GATT-TACAGAATTACTGTTTTACCCTCGA
1 TTTATAAAATTACCAAAATACCCTTAGTTTGTA-A-AATTACTGAAATACCCTCGA
* * ** *
42152775 TTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCC-CTA
1 TTTATAAAATTACCAAAATACCCTTAGTTTGTAAAATTACTGAAATACCCTCGA
* * * * *
42152828 GTTTGTAAAATTATCAAAATACCCTTGGTTTGTGAAATTACTGAAATACCCTCAA
1 -TTTATAAAATTACCAAAATACCCTTAGTTTGTAAAATTACTGAAATACCCTCGA
*
42152883 TTTGTAAAATTACCAAAATACCC
1 TTTATAAAATTACCAAAATACCC
42152906 CTGATTTACA
Statistics
Matches: 230, Mismatches: 46, Indels: 35
0.74 0.15 0.11
Matches are distributed among these distances:
52 4 0.02
53 12 0.05
54 199 0.87
55 12 0.05
56 3 0.01
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.36
Consensus pattern (54 bp):
TTTATAAAATTACCAAAATACCCTTAGTTTGTAAAATTACTGAAATACCCTCGA
Found at i:42152639 original size:27 final size:27
Alignment explanation
Indices: 42152563--42152989 Score: 178
Period size: 27 Copynumber: 15.7 Consensus size: 27
42152553 TTTAGTTTAC
* *
42152563 TAAAATTACCGAAATACCCT-TAGTTTG
1 TAAAATTACTGAAATACCCTCGA-TTTG
*
42152590 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* *
42152617 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* *
42152644 TAAAATTAC-CAAAGTACCCTCGATTTA
1 TAAAATTACTGAAA-TACCCTCGATTTG
* * *
42152671 CAGAATTA---AAATTTTACCCTCGATTTA
1 TAAAATTACTGAAA---TACCCTCGATTTG
* ** * *
42152698 TAGAATTACT-ATTTTACCCTTGATTTA
1 TAAAATTACTGA-AATACCCTCGATTTG
* ** * *
42152725 TAGAATTACT-ATTTTACCCTTGATTTA
1 TAAAATTACTGA-AATACCCTCGATTTG
* * *** *
42152752 CAGAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACTGAAATACCCTCGATTTG
* * *
42152779 CAAAATTACTAAAATACCCT-TAGTTTG
1 TAAAATTACTGAAATACCCTCGA-TTTG
** *
42152806 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACTGAAATACCCTCGA-TTTG
* * *
42152833 TAAAATTA-TCAAAATACCCTTGGTTTG
1 TAAAATTACT-GAAATACCCTCGATTTG
* *
42152860 TGAAATTACTGAAATACCCTCAATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
** *
42152887 TAAAATTACCAAAATACCC-CTGATTTA
1 TAAAATTACTGAAATACCCTC-GATTTG
* * * * *
42152914 CAAAGTTA-TAGAAATACCTTTGACTTTC
1 TAAAATTACT-GAAATACCCTCGA-TTTG
* * * *
42152942 TAAAAATTA-TAGAAATACCATTGGTTTA
1 T-AAAATTACT-GAAATACCCTCGATTTG
*
42152970 CAAAATTACTGAAATACCCT
1 TAAAATTACTGAAATACCCT
42152990 TAGTTTGTAG
Statistics
Matches: 324, Mismatches: 57, Indels: 38
0.77 0.14 0.09
Matches are distributed among these distances:
25 3 0.01
26 5 0.02
27 287 0.89
28 9 0.03
29 20 0.06
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.35
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGATTTG
Found at i:42152689 original size:81 final size:82
Alignment explanation
Indices: 42152604--42152915 Score: 257
Period size: 81 Copynumber: 3.9 Consensus size: 82
42152594 AATACTGAAA
* * *
42152604 TACCCTCGATTTGTAAAATTACTGAAATA-CCTTCGACTTGTAAAATTACCAAAGTACCCTCGAT
1 TACCCTCGATTTATAAAATTACTGAAATACCCTTCGATTTGTAAAATTACCAAAATACCCTCGAT
42152668 TTACAGAATTAAAATTT
66 TTACAGAATTAAAATTT
* ** * * * *** *
42152685 TACCCTCGATTTATAGAATTACT-ATTTTACCCTT-GATTTATAGAATTACTATTTTACCCTTGA
1 TACCCTCGATTTATAAAATTACTGA-AATACCCTTCGATTTGTAAAATTACCAAAATACCCTCGA
***
42152748 TTTACAGAATTACTGTTT
65 TTTACAGAATTAAAATTT
* * * * *
42152766 TACCCTCGATTTACAAAATTACTAAAATACCCTTAG-TTTGTAAAATTACCAAAATACCCCTAGT
1 TACCCTCGATTTATAAAATTACTGAAATACCCTTCGATTTGTAAAATTACCAAAATA-CCCTCGA
*
42152830 TTGTA-A-AATTATCAAA--A
65 TT-TACAGAATTA--AAATTT
* * * * *
42152847 TACCCTTGGTTTGTGAAATTACTGAAATACCC-TCAATTTGTAAAATTACCAAAATACCC-CTGA
1 TACCCTCGATTTATAAAATTACTGAAATACCCTTCGATTTGTAAAATTACCAAAATACCCTC-GA
42152910 TTTACA
65 TTTACA
42152916 AAGTTATAGA
Statistics
Matches: 179, Mismatches: 41, Indels: 23
0.74 0.17 0.09
Matches are distributed among these distances:
79 2 0.01
80 9 0.05
81 152 0.85
82 14 0.08
83 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.36
Consensus pattern (82 bp):
TACCCTCGATTTATAAAATTACTGAAATACCCTTCGATTTGTAAAATTACCAAAATACCCTCGAT
TTACAGAATTAAAATTT
Found at i:42153113 original size:27 final size:27
Alignment explanation
Indices: 42153036--42153113 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
42153026 AAATGACTAA
* *
42153036 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
42153063 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
42153090 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
42153114 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:42154321 original size:25 final size:25
Alignment explanation
Indices: 42154274--42154321 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
42154264 TTATAATTTG
* * *
42154274 AAAATGACCATTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
42154299 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
42154322 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:42154383 original size:20 final size:20
Alignment explanation
Indices: 42154358--42154408 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
42154348 ATTTTGATAA
*
42154358 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
42154378 ACATGACATGTATGATATGC
1 ACATGACATGTATGATATGC
*
42154398 ACATGAGATGT
1 ACATGACATGT
42154409 TCATAAATGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (20 bp):
ACATGACATGTATGATATGC
Found at i:42154536 original size:25 final size:24
Alignment explanation
Indices: 42154455--42154623 Score: 220
Period size: 25 Copynumber: 7.0 Consensus size: 24
42154445 AAGAAGTGCA
*
42154455 AAAGGGCTTATGCCCCAGTTAT-C
1 AAAGGGCTTATGCCCCAGTTATAT
42154478 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
42154501 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
42154526 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
42154551 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
*
42154575 AAAGGGCTTTTGCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
42154599 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
42154624 GATAAAGCAG
Statistics
Matches: 133, Mismatches: 7, Indels: 10
0.89 0.05 0.07
Matches are distributed among these distances:
23 44 0.33
24 31 0.23
25 58 0.44
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:42154618 original size:49 final size:47
Alignment explanation
Indices: 42154454--42154622 Score: 216
Period size: 49 Copynumber: 3.5 Consensus size: 47
42154444 GAAGAAGTGC
*
42154454 AAAAGGGCTTATGCCCCAGTTAT-CAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* **
42154500 TAAAGGGCTTATGCCCCAGTTATGATGAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAAGGGCTTATGCCCCAGTTAT
*
42154548 GATAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTACT
1 -A-AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
*
42154598 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
42154623 TGATAAAGCA
Statistics
Matches: 108, Mismatches: 8, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
46 22 0.20
48 30 0.28
49 33 0.31
50 23 0.21
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:42154869 original size:31 final size:31
Alignment explanation
Indices: 42154815--42154878 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
42154805 CGTTTACAGT
* * *
42154815 AAAGGCTTCGGCCCAGTAATATGATATTTGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
**
42154846 AAAGGCTTCAGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
42154877 AA
1 AA
42154879 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:42157085 original size:29 final size:29
Alignment explanation
Indices: 42157040--42157096 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
42157030 CATCTGAGGG
42157040 GAGGCATGGGTTCGAATCCCATGGCAAGC
1 GAGGCATGGGTTCGAATCCCATGGCAAGC
*
42157069 GAGGCATGGGTTTGAATCCCATGGCAAG
1 GAGGCATGGGTTCGAATCCCATGGCAAG
42157097 AAAGGAGCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.25, C:0.21, G:0.35, T:0.19
Consensus pattern (29 bp):
GAGGCATGGGTTCGAATCCCATGGCAAGC
Found at i:42157656 original size:278 final size:278
Alignment explanation
Indices: 42157158--42157714 Score: 1078
Period size: 278 Copynumber: 2.0 Consensus size: 278
42157148 TAAACTCTGA
42157158 TGTTGGAGGGATCCCACATCGGGAAGCTAACATAAGAGTGGATACAAAGCTGGCTTTAAATAGAG
1 TGTTGGAGGGATCCCACATCGGGAAGCTAACATAAGAGTGGATACAAAGCTGGCTTTAAATAGAG
42157223 GGAACCATGAGGAGAGTAAAGGCACCTTTCTTGGCTGATACCTTTCGTTGTATGGCGTGCTCGTT
66 GGAACCATGAGGAGAGTAAAGGCACCTTTCTTGGCTGATACCTTTCGTTGTATGGCGTGCTCGTT
42157288 TGGGTTGGGCGTCGGCTAAGAGTGCTCGGAGTGTGGATTAACTCCAGTCTCCTATCAAGTGTGTA
131 TGGGTTGGGCGTCGGCTAAGAGTGCTCGGAGTGTGGATTAACTCCAGTCTCCTATCAAGTGTGTA
* *
42157353 TTTCTTACTACTCTAGCTGTAGGATGGCTACTTCGGGTCGCGATGGGTCGAAAGGGGTCATGTGG
196 TTTCTTACTACTCTAGCTATAGGATGGCTACTTCGGGCCGCGATGGGTCGAAAGGGGTCATGTGG
42157418 GCCTAATGGGCCTACAGG
261 GCCTAATGGGCCTACAGG
42157436 TGTTGGAGGGATCCCACATCGGGAAGCTAACATAAGAGTGGATACAAAGCTGGCTTTAAATAGAG
1 TGTTGGAGGGATCCCACATCGGGAAGCTAACATAAGAGTGGATACAAAGCTGGCTTTAAATAGAG
42157501 GGAACCATGAGGAGAGTAAAGGCACCTTTCTTGGCTGATACCTTTCGTTGTATGGCGTGCTCGTT
66 GGAACCATGAGGAGAGTAAAGGCACCTTTCTTGGCTGATACCTTTCGTTGTATGGCGTGCTCGTT
*
42157566 TGGGTTGGGCGTCGGCTAAGAGTGCTCGGAGTGTGGATTAACTCCAGTCTCCTATCAGGTGTGTA
131 TGGGTTGGGCGTCGGCTAAGAGTGCTCGGAGTGTGGATTAACTCCAGTCTCCTATCAAGTGTGTA
*
42157631 TTTCTTACTACTCTAGCTATAGGATGGCTACTTCGGGCCGCGATGGGTCGAAAGGGGTCATGTTG
196 TTTCTTACTACTCTAGCTATAGGATGGCTACTTCGGGCCGCGATGGGTCGAAAGGGGTCATGTGG
42157696 GCCTAATGGGCCTACAGG
261 GCCTAATGGGCCTACAGG
42157714 T
1 T
42157715 CCAATTGGAT
Statistics
Matches: 275, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
278 275 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (278 bp):
TGTTGGAGGGATCCCACATCGGGAAGCTAACATAAGAGTGGATACAAAGCTGGCTTTAAATAGAG
GGAACCATGAGGAGAGTAAAGGCACCTTTCTTGGCTGATACCTTTCGTTGTATGGCGTGCTCGTT
TGGGTTGGGCGTCGGCTAAGAGTGCTCGGAGTGTGGATTAACTCCAGTCTCCTATCAAGTGTGTA
TTTCTTACTACTCTAGCTATAGGATGGCTACTTCGGGCCGCGATGGGTCGAAAGGGGTCATGTGG
GCCTAATGGGCCTACAGG
Found at i:42157966 original size:27 final size:27
Alignment explanation
Indices: 42157890--42157996 Score: 128
Period size: 27 Copynumber: 4.0 Consensus size: 27
42157880 TTTAGTTTAC
* *
42157890 TAAAATTACCGAAATACCCT-TAGTTTG
1 TAAAATTACTGAAATACCCTCGA-TTTG
*
42157917 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* *
42157944 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCCTCGATTTG
*
42157971 TAAAATTAC-CAAAGTACCCTCGATTT
1 TAAAATTACTGAAA-TACCCTCGATTT
42157997 ACAGAATTAC
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 3 0.04
27 65 0.94
28 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGATTTG
Found at i:42158004 original size:27 final size:27
Alignment explanation
Indices: 42157985--42158845 Score: 1641
Period size: 27 Copynumber: 31.9 Consensus size: 27
42157975 ATTACCAAAG
* * *
42157985 TACCCTCGATTTACAGAATTACAATTT
1 TACCCTTGATTTATAGAATTACTATTT
*
42158012 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158039 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158066 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158093 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158120 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158147 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158174 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158201 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158228 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158255 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158282 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158309 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158336 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158363 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158390 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158417 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158444 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158471 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158498 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158525 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158552 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158579 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158606 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158633 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158660 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158687 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158714 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158741 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
42158768 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTATTT
*
42158795 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTTGATTTATAGAATTACTATTT
** * *
42158822 TACCCTCAATTTACAAAATTACTA
1 TACCCTTGATTTATAGAATTACTA
42158846 AAATACCCTT
Statistics
Matches: 825, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
27 825 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.47
Consensus pattern (27 bp):
TACCCTTGATTTATAGAATTACTATTT
Done.