Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 147 of 322
Found at i:48302866 original size:13 final size:13
Alignment explanation
Indices: 48302858--48302882 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48302848 CGAAATTAAT
48302858 AATAAAAATAAAA
1 AATAAAAATAAAA
48302871 AATAAAAATAAA
1 AATAAAAATAAA
48302883 CTTTCTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AATAAAAATAAAA
Found at i:48304986 original size:55 final size:55
Alignment explanation
Indices: 48304927--48305033 Score: 142
Period size: 55 Copynumber: 1.9 Consensus size: 55
48304917 AAAATTTGAC
** *
48304927 AGGTTCGACCACGGGTGTTCGACACCGGCGTGTCGCACGCCCGTGCTATTTTATT
1 AGGTTCGACCACGGGTCCTCCACACCGGCGTGTCGCACGCCCGTGCTATTTTATT
* * * * *
48304982 AGGTTCGTCCATGGTTCCTCCACACGGGCGTGTCGCACGCCCGTGTTATTTT
1 AGGTTCGACCACGGGTCCTCCACACCGGCGTGTCGCACGCCCGTGCTATTTT
48305034 GGCAGGCTCG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 44 1.00
ACGTcount: A:0.13, C:0.30, G:0.28, T:0.29
Consensus pattern (55 bp):
AGGTTCGACCACGGGTCCTCCACACCGGCGTGTCGCACGCCCGTGCTATTTTATT
Found at i:48313048 original size:20 final size:21
Alignment explanation
Indices: 48313023--48313061 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
48313013 CCCAATGTAC
48313023 TTTTCATATACA-CATATAAT
1 TTTTCATATACATCATATAAT
*
48313043 TTTTCATTTACATCATATA
1 TTTTCATATACATCATATA
48313062 TGATTTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTTCATATACATCATATAAT
Found at i:48313288 original size:43 final size:42
Alignment explanation
Indices: 48313233--48313399 Score: 178
Period size: 43 Copynumber: 4.0 Consensus size: 42
48313223 ATATCGTACA
*
48313233 ATGCCAACATCCCAGACGTGGTCTTACATGCTATCACATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACG-TATCACATATCG
* *
48313276 ATGCC-ACTATCCCAGACAG-GGTCTTACACGAATCAAATA-CG
1 ATGCCAAC-ATCCCAGAC-GTGGTCTTACACGTATCACATATCG
* * ** * *
48313317 ATGTCGATGTCCCGGACATGGTCTTACACGTGATCACATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGT-ATCACATATCG
* *
48313360 ATGCCAACATCCAAGACGTGGTCTTACACGAATCACATAT
1 ATGCCAACATCCCAGACGTGGTCTTACACGTATCACATAT
48313400 AGGAAATCTT
Statistics
Matches: 100, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
41 24 0.24
42 26 0.26
43 49 0.49
44 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAACATCCCAGACGTGGTCTTACACGTATCACATATCG
Found at i:48321181 original size:50 final size:49
Alignment explanation
Indices: 48321058--48321253 Score: 221
Period size: 50 Copynumber: 3.9 Consensus size: 49
48321048 TCTATTATGA
* * * *
48321058 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * **
48321108 CGATCACATGTGTAGTACAAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
48321158 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTGCCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
48321208 TGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
48321254 GCTTTGGCTA
Statistics
Matches: 120, Mismatches: 25, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
49 39 0.32
50 43 0.36
51 38 0.32
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:48325144 original size:13 final size:13
Alignment explanation
Indices: 48325126--48325150 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48325116 TATGGTCTAC
48325126 GATTTCGCGAAAT
1 GATTTCGCGAAAT
48325139 GATTTCGCGAAA
1 GATTTCGCGAAA
48325151 ATTTTGTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (13 bp):
GATTTCGCGAAAT
Found at i:48326613 original size:50 final size:51
Alignment explanation
Indices: 48326492--48326680 Score: 222
Period size: 50 Copynumber: 3.8 Consensus size: 51
48326482 TGAGGCCACA
* * *
48326492 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTAGATCACG
* * ** *
48326543 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTAGATCACG
* * * ***
48326593 TGTGTTGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TTTG-TCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTAGATCACG
*
48326642 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
48326681 GCTTTGGCTA
Statistics
Matches: 117, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 38 0.32
50 45 0.38
51 34 0.29
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTAGATCACG
Found at i:48330543 original size:27 final size:27
Alignment explanation
Indices: 48330511--48330562 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
48330501 TTAAGACCCC
48330511 AGTTTGTAAAAGTACCAAAATACCCTT
1 AGTTTGTAAAAGTACCAAAATACCCTT
* * *
48330538 AGTTTGTAAAATTACCGAATTACCC
1 AGTTTGTAAAAGTACCAAAATACCC
48330563 CTATAAGGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (27 bp):
AGTTTGTAAAAGTACCAAAATACCCTT
Found at i:48333931 original size:193 final size:193
Alignment explanation
Indices: 48333602--48333975 Score: 541
Period size: 193 Copynumber: 1.9 Consensus size: 193
48333592 CTGAATATAG
* * * *
48333602 TGTAACACCCCTAACCTCCATCTGTCGTCAGAATAGGGTTTCAGAATATTACCTAAACTTTAAGA
1 TGTAACACCCCTAACCTCCATCTATCGTCAGAATAGGGTTTCAGAACAATACCGAAACTTTAAGA
** * *
48333667 ATGTTTTACAAATAATCTATGTAAATTACTATTCATTAACCGAGATCATTCAAAACATCCCTGAA
66 ACATTTTACAAATAATCTATGTAAATTACTATTCATTAACCAAGATCATTAAAAACATCCCTGAA
* * * * * * *
48333732 TTGGACCTTGAAGGCCTAATACGAGCATTAGATTCGAGTCGAGACTTAATCGGGCACTCCAAA
131 TTGGACCCTCAAGGCCCAATACAAGCACTAAAGTCGAGTCGAGACTTAATCGGGCACTCCAAA
* * *
48333795 TGTAACACCCCTAACCTGCATCTATCGTCAGAATAGGGTTTCAGAGCAATACCGAAACTTTCAGA
1 TGTAACACCCCTAACCTCCATCTATCGTCAGAATAGGGTTTCAGAACAATACCGAAACTTTAAGA
* * * *
48333860 ACATTTTACAAATAATTTATGTAAATTACTATTTATTAACCAAGATCATTAAAAACGTCCCTTAA
66 ACATTTTACAAATAATCTATGTAAATTACTATTCATTAACCAAGATCATTAAAAACATCCCTGAA
*
48333925 TTGGACCCTCAAGGCCCAATACAAGCACTAAAGTCGAGTCGGGACTTAATC
131 TTGGACCCTCAAGGCCCAATACAAGCACTAAAGTCGAGTCGAGACTTAATC
48333976 AGGAACTCTA
Statistics
Matches: 158, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
193 158 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.28
Consensus pattern (193 bp):
TGTAACACCCCTAACCTCCATCTATCGTCAGAATAGGGTTTCAGAACAATACCGAAACTTTAAGA
ACATTTTACAAATAATCTATGTAAATTACTATTCATTAACCAAGATCATTAAAAACATCCCTGAA
TTGGACCCTCAAGGCCCAATACAAGCACTAAAGTCGAGTCGAGACTTAATCGGGCACTCCAAA
Found at i:48335754 original size:13 final size:13
Alignment explanation
Indices: 48335736--48335760 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48335726 GATATTATAT
48335736 GTGTGAAAATTTC
1 GTGTGAAAATTTC
48335749 GTGTGAAAATTT
1 GTGTGAAAATTT
48335761 TATTGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:48337032 original size:43 final size:44
Alignment explanation
Indices: 48336874--48337037 Score: 171
Period size: 43 Copynumber: 3.8 Consensus size: 44
48336864 ATAGGATTCT
* *
48336874 GATATGTGA-TTTCATGTAAGACCACGTCTGGGAC-GTTGGAATC
1 GATATGTGAGTTACATGTAAGACCACGTCTGGGACAG-TGGCATC
* * * *
48336917 GATTTGTGATTTACATGTAAGACCATGTTTGGGACA-TCGGCATC
1 GATATGTGAGTTACATGTAAGACCACGTCTGGGACAGT-GGCATC
* **
48336961 G-TATATGAGTT-TGTGTAAGACC-CTGTCTGGGACAGTGGCATC
1 GATATGTGAGTTACATGTAAGACCAC-GTCTGGGACAGTGGCATC
48337003 GATATGTGA-TTACATGTAAGACCACGTCTGGGACA
1 GATATGTGAGTTACATGTAAGACCACGTCTGGGACA
48337038 TTAGCGTTGT
Statistics
Matches: 98, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
42 27 0.28
43 42 0.43
44 29 0.30
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.30
Consensus pattern (44 bp):
GATATGTGAGTTACATGTAAGACCACGTCTGGGACAGTGGCATC
Found at i:48345301 original size:157 final size:157
Alignment explanation
Indices: 48345015--48345487 Score: 937
Period size: 157 Copynumber: 3.0 Consensus size: 157
48345005 CCAGGGGTTA
*
48345015 ATTTGGAAAACTATTAAAGGTTGAAGAACATGCCATGAATTTGTTTGAATTGGTTTTGATACTAT
1 ATTTGGAAAACTATTAAAGGTTGAAGAACATGCCATGAATTTGTTTGAATTGGTTTTGATACAAT
48345080 TTGATGGATTATTTGTCTTTGTTGTAAAATAAACATGTTTTTTTGTTGTTGAATTTTGGAATGAG
66 TTGATGGATTATTTGTCTTTGTTGTAAAATAAACATGTTTTTTTGTTGTTGAATTTTGGAATGAG
48345145 GGATTAAATCATTAAAGGTGTAAATCT
131 GGATTAAATCATTAAAGGTGTAAATCT
48345172 ATTTGGAAAACTATTAAAGGTTGAAGAACATGCCATGAATTTGTTTGAATTGGTTTTGATACAAT
1 ATTTGGAAAACTATTAAAGGTTGAAGAACATGCCATGAATTTGTTTGAATTGGTTTTGATACAAT
48345237 TTGATGGATTATTTGTCTTTGTTGTAAAATAAACATGTTTTTTTGTTGTTGAATTTTGGAATGAG
66 TTGATGGATTATTTGTCTTTGTTGTAAAATAAACATGTTTTTTTGTTGTTGAATTTTGGAATGAG
48345302 GGATTAAATCATTAAAGGTGTAAATCT
131 GGATTAAATCATTAAAGGTGTAAATCT
48345329 ATTTGGAAAACTATTAAAGGTTGAAGAACATGCCATGAATTTGTTTGAATTGGTTTTGATACAAT
1 ATTTGGAAAACTATTAAAGGTTGAAGAACATGCCATGAATTTGTTTGAATTGGTTTTGATACAAT
48345394 TTGATGGATTATTTGTCTTTGTTGTAAAATAAACATGTTTTTTTGTTGTTGAATTTTGGAATGAG
66 TTGATGGATTATTTGTCTTTGTTGTAAAATAAACATGTTTTTTTGTTGTTGAATTTTGGAATGAG
48345459 GGATTAAATCATTAAAGGTGTAAATCT
131 GGATTAAATCATTAAAGGTGTAAATCT
48345486 AT
1 AT
48345488 GGGTTTTATT
Statistics
Matches: 315, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
157 315 1.00
ACGTcount: A:0.32, C:0.06, G:0.20, T:0.42
Consensus pattern (157 bp):
ATTTGGAAAACTATTAAAGGTTGAAGAACATGCCATGAATTTGTTTGAATTGGTTTTGATACAAT
TTGATGGATTATTTGTCTTTGTTGTAAAATAAACATGTTTTTTTGTTGTTGAATTTTGGAATGAG
GGATTAAATCATTAAAGGTGTAAATCT
Found at i:48348870 original size:40 final size:39
Alignment explanation
Indices: 48348786--48348970 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
48348776 TTGAATGATG
* * * *
48348786 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGC-GAGTTACTAAA
* * *
48348826 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
48348866 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
48348905 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
48348946 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
48348971 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 35 0.28
40 79 0.63
41 12 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:48348923 original size:79 final size:81
Alignment explanation
Indices: 48348786--48348970 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
48348776 TTGAATGATG
* *
48348786 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
48348850 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
48348865 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
48348927 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
48348945 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
48348971 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:48348992 original size:79 final size:79
Alignment explanation
Indices: 48348839--48349003 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
48348829 GGACTAAGAT
* **
48348839 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
48348904 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
48348918 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
48348981 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
48348997 CCGAAGG
1 CCGAAGG
48349004 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:48351384 original size:47 final size:44
Alignment explanation
Indices: 48351316--48351578 Score: 183
Period size: 47 Copynumber: 5.6 Consensus size: 44
48351306 TTTGTGCGCT
* *
48351316 AGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCC-TA-TATGAGAGCC
* ** * *
48351362 AGTGTAAGACCATGTCTGGGACATGGCATCGATACAGAAATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-A-GCCTATATGAGAGCC
* * *
48351410 AGAGTAAGACATGTTTGGGACATGCATCAGCCTCGACA-GAGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCT--ATATGAG--AGCC
* * * * *
48351457 AGTGTAAGACGTGTCTGGGACACGCATC-GGCTA-A-GAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTATATGA---GAGCC
*
48351501 AGTGTAAGACATGTCTGGGACATGCATCAGCGCGCATGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCA--GC-C-TATATGAGAGCC
48351549 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
48351579 GGCAATTTAT
Statistics
Matches: 170, Mismatches: 27, Indels: 36
0.73 0.12 0.15
Matches are distributed among these distances:
43 3 0.02
44 30 0.18
45 4 0.02
46 20 0.12
47 55 0.32
48 32 0.19
49 17 0.10
50 7 0.04
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTATATGAGAGCC
Found at i:48357914 original size:15 final size:15
Alignment explanation
Indices: 48357894--48357922 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
48357884 TTTTAGATTT
48357894 TTTAAAAAAATTAAA
1 TTTAAAAAAATTAAA
48357909 TTTAAAAAAATTAA
1 TTTAAAAAAATTAA
48357923 TAAAAGAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
TTTAAAAAAATTAAA
Found at i:48365561 original size:46 final size:46
Alignment explanation
Indices: 48365494--48365668 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
48365484 TGTAACCCGC
*
48365494 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTAGCAT
* *
48365540 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-GCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGTTAGCAT
* *** * * * * *
48365586 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTTGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCGTTAGCAT
* *
48365633 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
48365669 ATGCCCAAAT
Statistics
Matches: 104, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
46 69 0.66
47 34 0.33
48 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTAGCAT
Found at i:48365614 original size:93 final size:93
Alignment explanation
Indices: 48365502--48365671 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
48365492 GCCCATAAGT
* * *
48365502 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
48365567 CGAGCTCGGATGGCTAGTTACATCTCTC
66 CGAGCTCGGATGGCTAGTTACATCTCTC
* * *
48365595 GAACTCGGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
*
48365660 CGAGTTCGGATG
66 CGAGCTCGGATG
48365672 CCCAAATATC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCGGATGGCTAGTTACATCTCTC
Found at i:48369246 original size:16 final size:16
Alignment explanation
Indices: 48369227--48369258 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
48369217 CAATTTTTAT
*
48369227 AAAATTTTTGTTTTTG
1 AAAATCTTTGTTTTTG
48369243 AAAATCTTTGTTTTTG
1 AAAATCTTTGTTTTTG
48369259 TAAACCCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.03, G:0.12, T:0.59
Consensus pattern (16 bp):
AAAATCTTTGTTTTTG
Found at i:48370301 original size:27 final size:28
Alignment explanation
Indices: 48370247--48370306 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 28
48370237 TGTGACAGTT
* *
48370247 ACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGATACAAATAATCGTAGCAGAGCC
* *
48370275 ACCAGAT-CAAATAATTGTAGCATAGCC
1 ACCAGATACAAATAATCGTAGCAGAGCC
48370302 ACCAG
1 ACCAG
48370307 GACGCTTCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 21 0.75
28 7 0.25
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.17
Consensus pattern (28 bp):
ACCAGATACAAATAATCGTAGCAGAGCC
Found at i:48377396 original size:19 final size:19
Alignment explanation
Indices: 48377372--48377411 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
48377362 TGTGCCATCG
*
48377372 TAAATTCATAGGCATAACT
1 TAAATTCATAAGCATAACT
*
48377391 TAAATTTATAAGCATAACT
1 TAAATTCATAAGCATAACT
48377410 TA
1 TA
48377412 CACATTTTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.35
Consensus pattern (19 bp):
TAAATTCATAAGCATAACT
Found at i:48388905 original size:46 final size:45
Alignment explanation
Indices: 48388855--48389044 Score: 156
Period size: 46 Copynumber: 4.1 Consensus size: 45
48388845 GCTAGTGTAA
*
48388855 GACAT-CATCGACCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 GACATGCATCGACCACA-GATGAGAGCCAGTGTAAGA-CATGTCTGG
* * * * **
48388901 GACATGGCATCG-GCATTAAGACGAGAGCTAGTGTAAGACATGTCTAA
1 GACAT-GCATCGACCA--CAGATGAGAGCCAGTGTAAGACATGTCTGG
* *
48388948 GACATGCATCTACCTCGAGATGTA-AGCCAGTGTAAGACATGTCTGG
1 GACATGCATCGACCAC-AGATG-AGAGCCAGTGTAAGACATGTCTGG
* * *
48388994 GACATGCATCGACTAC-GA-GATGTGTCAGTGTAAGACCATGTCTGG
1 GACATGCATCGACCACAGATGA-GAGCCAGTGTAAGA-CATGTCTGG
48389039 GACATG
1 GACATG
48389045 GCATTGGCAC
Statistics
Matches: 114, Mismatches: 20, Indels: 21
0.74 0.13 0.14
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 13 0.11
45 15 0.13
46 46 0.40
47 16 0.14
48 21 0.18
49 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.23
Consensus pattern (45 bp):
GACATGCATCGACCACAGATGAGAGCCAGTGTAAGACATGTCTGG
Found at i:48396673 original size:46 final size:45
Alignment explanation
Indices: 48396538--48396757 Score: 182
Period size: 46 Copynumber: 4.8 Consensus size: 45
48396528 TTATTTGTGT
* *
48396538 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GAT-AGA
* * * * *
48396584 GCCAGCGTAAGACCATATCTGGGACATGGCATCGGCATTGAGATAAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAT-AGA
48396632 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAT-GTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAG--A
* * * *
48396678 G-TCAGTGTAAGACATATCTAGGACATGCATCGG-CTAAGAGAT-GC
1 GCT-AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATAGA
*
48396722 G-TCAGAGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
48396758 ACGGATATTT
Statistics
Matches: 144, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
44 12 0.08
45 15 0.10
46 67 0.47
47 26 0.18
48 23 0.16
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.22
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGA
Found at i:48400733 original size:21 final size:20
Alignment explanation
Indices: 48400709--48400748 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
48400699 GTGATAACGA
48400709 CCACACGAGCGTGTTGCCCTT
1 CCACACGAGCGTG-TGCCCTT
* *
48400730 CCACATGGGCGTGTGCCCT
1 CCACACGAGCGTGTGCCCT
48400749 ATTTCAAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.12, C:0.38, G:0.28, T:0.23
Consensus pattern (20 bp):
CCACACGAGCGTGTGCCCTT
Found at i:48407969 original size:12 final size:12
Alignment explanation
Indices: 48407952--48407977 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
48407942 CATTCCGAAG
48407952 TATATATATACA
1 TATATATATACA
48407964 TATATATATACA
1 TATATATATACA
48407976 TA
1 TA
48407978 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:48408488 original size:27 final size:27
Alignment explanation
Indices: 48408457--48408634 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
48408447 TAAATTGTAC
48408457 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
48408484 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
48408510 ATGCACTAAGTGTGCAAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
48408538 GGCACTAAGTGTGCAAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
48408566 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
48408593 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
48408620 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
48408635 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:48408625 original size:82 final size:81
Alignment explanation
Indices: 48408454--48408633 Score: 209
Period size: 82 Copynumber: 2.2 Consensus size: 81
48408444 GATTAAATTG
* * *
48408454 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCAATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
48408519 GTGTGCAAATTGACCA
66 GTGTGCAAATTGACCA
* * ** *
48408535 TGCGGCACTAAGTGTGCAAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCAA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
48408599 AAGTGTGCGAGTTGATTA
64 AAGTGTGCAAATTGACCA
* *
48408617 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
48408634 GGACTCAATA
Statistics
Matches: 81, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 64 0.79
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCAATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCAAATTGACCA
Found at i:48411384 original size:45 final size:45
Alignment explanation
Indices: 48411324--48411416 Score: 123
Period size: 45 Copynumber: 2.1 Consensus size: 45
48411314 ATCTTTAATG
* * *
48411324 TGTCATAAGTTTATTAATTGTGTCCTATTTAGTACAGTATTTTAA
1 TGTCATAAGTCTATTAATTGTGTCCTACTTAGTACAGCATTTTAA
* * * *
48411369 TGTCTTAAGTCTATTAATTTTGTCTTACTTAGTATAGCATTTTAA
1 TGTCATAAGTCTATTAATTGTGTCCTACTTAGTACAGCATTTTAA
48411414 TGT
1 TGT
48411417 GTCTTTGTTC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.51
Consensus pattern (45 bp):
TGTCATAAGTCTATTAATTGTGTCCTACTTAGTACAGCATTTTAA
Found at i:48414129 original size:43 final size:42
Alignment explanation
Indices: 48413994--48414142 Score: 135
Period size: 44 Copynumber: 3.5 Consensus size: 42
48413984 TGTGATTTCG
** * * * *
48413994 TGTAAGACCAAGTCTGGGACGTTGGCATCG-ATTTGAGTTTTA
1 TGTAAGACCCTGTCTGGGACATCGGCATCGTATTTGA-TATCA
*
48414036 TGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGATATCA
1 --TGTAAGACCCTGTCTGGGACATCGGCATCGTATTTGATATCA
*
48414080 TGTAAGACCCTGTCTGGGATAGT-GGCATCGATATTTGAT-TACA
1 TGTAAGACCCTGTCTGGGACA-TCGGCATCG-TATTTGATAT-CA
48414123 TGTAAGACCAC-GTCTGGGAC
1 TGTAAGACC-CTGTCTGGGAC
48414143 GTTGGCATTC
Statistics
Matches: 92, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
42 27 0.29
43 28 0.30
44 31 0.34
45 6 0.07
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCCTGTCTGGGACATCGGCATCGTATTTGATATCA
Found at i:48414149 original size:43 final size:42
Alignment explanation
Indices: 48413994--48414150 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 42
48413984 TGTGATTTCG
* **
48413994 TGTAAGACCAAGTCTGGGACGTTGGCATCG-ATTTGAGTTTTATG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGA---TTACA
* * *
48414038 TGTAAGACCATGTCTGGGACATCGGCATCGTATTTGA-TATCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTA-CA
*
48414080 TGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCG-TATTTGATTACA
48414123 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
48414151 TCTATGAGCT
Statistics
Matches: 95, Mismatches: 10, Indels: 17
0.78 0.08 0.14
Matches are distributed among these distances:
41 2 0.02
42 25 0.26
43 32 0.34
44 30 0.32
45 6 0.06
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTACA
Found at i:48414909 original size:20 final size:22
Alignment explanation
Indices: 48414870--48414910 Score: 59
Period size: 20 Copynumber: 1.9 Consensus size: 22
48414860 TATATGTTTG
48414870 GTATGATTTTGGCTTATGAATGA
1 GTATGATTTTGGC-TATGAATGA
48414893 GTATGA-TTTGG-TATGAAT
1 GTATGATTTTGGCTATGAAT
48414911 TTAGAGTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
22 5 0.28
23 6 0.33
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (22 bp):
GTATGATTTTGGCTATGAATGA
Found at i:48417818 original size:37 final size:37
Alignment explanation
Indices: 48417768--48418021 Score: 490
Period size: 37 Copynumber: 6.9 Consensus size: 37
48417758 GGAAATATAT
48417768 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
48417805 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
48417842 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
48417879 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
48417916 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
48417953 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
48417990 TCCGGGTAAGACCCGATAACTACGTGTGGAGA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA
48418022 CTATTCGAGC
Statistics
Matches: 215, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 215 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:48419427 original size:40 final size:40
Alignment explanation
Indices: 48419365--48419536 Score: 272
Period size: 40 Copynumber: 4.3 Consensus size: 40
48419355 GAGTTATATA
* *
48419365 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATG
* *
48419405 TATCTGGGCTAAGTTCCAAAGAGCAGTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATG
* *
48419445 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
1 TATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATG
* *
48419485 TATCCGGGCTAAGTTCCAAAGAGCATTCATGCTAGTGATA
1 TATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATG
48419525 TATCCGGGCTAA
1 TATCCGGGCTAA
48419537 ACCTCGAAGG
Statistics
Matches: 120, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 120 1.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATG
Found at i:48419498 original size:80 final size:80
Alignment explanation
Indices: 48419362--48419558 Score: 299
Period size: 80 Copynumber: 2.5 Consensus size: 80
48419352 TGAGAGTTAT
* *
48419362 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCTGGGCTAAGTTCCAAAGA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAGTTCCAAAGA
*
48419427 GCAGTCGTGCTAGTG
66 GCAGTCATGCTAGTG
* *
48419442 ATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAGTTCCAAAGA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAGTTCCAAAGA
*
48419507 GCATTCATGCTAGTG
66 GCAGTCATGCTAGTG
* *
48419522 ATATATCCGGGCTAA-ACCTCGAAG-GCATTCATGCTAG
1 ATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTAG
48419559 AGTTATGAGG
Statistics
Matches: 106, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
79 13 0.12
80 93 0.88
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAGTTCCAAAGA
GCAGTCATGCTAGTG
Found at i:48419654 original size:57 final size:57
Alignment explanation
Indices: 48419564--48419731 Score: 237
Period size: 57 Copynumber: 2.9 Consensus size: 57
48419554 GCTAGAGTTA
* * * * *
48419564 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTGTGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
**
48419621 TGAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
* * * *
48419678 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGT
1 TGAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT
48419732 CAGTGGGCAC
Statistics
Matches: 98, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 98 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAAT
Found at i:48419695 original size:29 final size:29
Alignment explanation
Indices: 48419596--48419697 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
48419586 CTTCAACCGA
* * * *
48419596 GCACTGTGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
* ** *
48419625 GCACTATGTGTGCAAG-TTCTTCAATCGA-
1 GCACTATGTGTGCGAGATTAGT-AATTGAG
*
48419653 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
48419682 GCACTATGTGTGCGAG
1 GCACTATGTGTGCGAG
48419698 TTCTTTAATC
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 22 0.37
29 37 0.63
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATTAGTAATTGAG
Found at i:48419706 original size:29 final size:28
Alignment explanation
Indices: 48419568--48419724 Score: 127
Period size: 28 Copynumber: 5.5 Consensus size: 28
48419558 GAGTTATGAG
* * * *
48419568 GCACTGTGTGTGCAAGTTCTTCAACCGA
1 GCACTATGTGTGCGAGTTCTTTAATCGA
* * * ** * *
48419596 GCACTGTGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTCTTTAATCGA
* *
48419624 GGCACTATGTGTGCAAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATCGA
** *
48419653 GCACTATGTGTGCGAGATT-GGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTTAATCGA
48419681 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATCGA
*
48419710 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
48419725 AATCAGTCAG
Statistics
Matches: 100, Mismatches: 25, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
28 56 0.56
29 44 0.44
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATCGA
Found at i:48422332 original size:37 final size:37
Alignment explanation
Indices: 48422282--48422387 Score: 194
Period size: 37 Copynumber: 2.9 Consensus size: 37
48422272 GGAAATATAT
48422282 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
48422319 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
48422356 TCCGGGTAAGACCCGATAACTACGTGTGGAGA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA
48422388 CTATTCGAGC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:48435113 original size:43 final size:43
Alignment explanation
Indices: 48435059--48435187 Score: 143
Period size: 43 Copynumber: 3.0 Consensus size: 43
48435049 GCTGGTGAAT
* * * * *
48435059 AATATTATCGGGCTTTGGGCCTAGCGGGCTATAATGTCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGA
*
48435102 GATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGA
* *** * *
48435145 AATGATATCGGGCTTCAACCCTAGCAGGCGA-AATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGA
48435187 A
1 A
48435188 TGAGTTCAGA
Statistics
Matches: 73, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 11 0.15
43 62 0.85
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (43 bp):
AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGA
Found at i:48435268 original size:40 final size:41
Alignment explanation
Indices: 48435121--48435267 Score: 136
Period size: 40 Copynumber: 3.6 Consensus size: 41
48435111 GGGCTTCGGG
* * *
48435121 CCTAGCAGGCTATAATGCCGATGAAATG-ATATCGGGCTTCAAC
1 CCTAGCAGGCTA-AATGCCGGTG-AATGAAT-TCGGGCTTAAAA
* * * * *
48435164 CCTAGCAGGCGAAATGCCGGTGAATGAGTTCAGACTTAAAG
1 CCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAAA
* *** *
48435205 TCTAGCAGGCTTCGTGCCGGTG-ATGAATTCGGGTTTAAAA
1 CCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAAA
48435245 CCTAGCAGGCTAAATGCCGGTGA
1 CCTAGCAGGCTAAATGCCGGTGA
48435268 TTTGATAAAA
Statistics
Matches: 81, Mismatches: 21, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
40 31 0.38
41 29 0.36
42 10 0.12
43 11 0.14
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (41 bp):
CCTAGCAGGCTAAATGCCGGTGAATGAATTCGGGCTTAAAA
Found at i:48439847 original size:46 final size:46
Alignment explanation
Indices: 48439747--48439909 Score: 199
Period size: 46 Copynumber: 3.5 Consensus size: 46
48439737 ATTGTGAGCT
* * *
48439747 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTTGAGATGA-AGCC
48439795 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCTTGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTTGAGATG-AAGCC
* * *
48439841 AATGTAAGA-CATGTTTGGGACATGCATCGG-CTACGAGATG-AGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-TGAGATGAAGCC
*
48439885 AGTGTAAGACCATGTCTAGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
48439910 GCATTGGCAT
Statistics
Matches: 103, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
44 12 0.12
45 15 0.15
46 52 0.50
47 15 0.15
48 9 0.09
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTTGAGATGAAGCC
Found at i:48442322 original size:10 final size:10
Alignment explanation
Indices: 48442307--48442340 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
48442297 AATTTTAGAT
48442307 TTAAAAAAAA
1 TTAAAAAAAA
48442317 TTAAAAAAAA
1 TTAAAAAAAA
*
48442327 -TAAAAATAA
1 TTAAAAAAAA
48442336 TTAAA
1 TTAAA
48442341 TTTTAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (10 bp):
TTAAAAAAAA
Found at i:48442931 original size:21 final size:21
Alignment explanation
Indices: 48442905--48442947 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
48442895 TGACTTAATA
48442905 TATTTATAGGATACAGTTCAT
1 TATTTATAGGATACAGTTCAT
48442926 TATTTATAGGATACAGTTCAT
1 TATTTATAGGATACAGTTCAT
48442947 T
1 T
48442948 GGTAAAGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (21 bp):
TATTTATAGGATACAGTTCAT
Found at i:48443267 original size:31 final size:30
Alignment explanation
Indices: 48443225--48443309 Score: 91
Period size: 31 Copynumber: 2.8 Consensus size: 30
48443215 GATTAAATCA
*
48443225 AAATTAAAGTTTAAAGTATACATTTGAACC
1 AAATTAAAGTTTAAAGTATACAATTGAACC
* * * * * *
48443255 ACAATTAGAGTTTCACGTGTATAATTGCACC
1 A-AATTAAAGTTTAAAGTATACAATTGAACC
48443286 AAATTAAAGTTTAAA-TATACAATT
1 AAATTAAAGTTTAAAGTATACAATT
48443310 ATACATTAAA
Statistics
Matches: 42, Mismatches: 12, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
29 7 0.17
30 12 0.29
31 23 0.55
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.34
Consensus pattern (30 bp):
AAATTAAAGTTTAAAGTATACAATTGAACC
Found at i:48443525 original size:23 final size:23
Alignment explanation
Indices: 48443493--48443537 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
48443483 ACAAATATAA
48443493 TTTTACACTAGTATAAGTATATT
1 TTTTACACTAGTATAAGTATATT
*
48443516 TTTTATACTAGTATAAGTATAT
1 TTTTACACTAGTATAAGTATAT
48443538 CTTTATTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.49
Consensus pattern (23 bp):
TTTTACACTAGTATAAGTATATT
Found at i:48444345 original size:31 final size:32
Alignment explanation
Indices: 48444299--48444360 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
48444289 TTATTTACAG
*
48444299 TGCATTATTTTTTAACATTCAGATAGGTTCAA
1 TGCATTATTTTTTAACATTAAGATAGGTTCAA
* *
48444331 TGCATTA-TTTTTAACGTTAAGATCGGTTCA
1 TGCATTATTTTTTAACATTAAGATAGGTTCA
48444361 GAAAATATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 20 0.74
32 7 0.26
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.44
Consensus pattern (32 bp):
TGCATTATTTTTTAACATTAAGATAGGTTCAA
Found at i:48447079 original size:40 final size:40
Alignment explanation
Indices: 48446996--48447178 Score: 140
Period size: 40 Copynumber: 4.6 Consensus size: 40
48446986 TTGAATGCTG
* * * * *
48446996 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* *
48447036 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
** * *
48447076 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
48447116 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* * *
48447155 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATT
48447179 TGAACGAGGA
Statistics
Matches: 124, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
39 36 0.29
40 77 0.62
41 10 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:48447160 original size:39 final size:39
Alignment explanation
Indices: 48447049--48447178 Score: 179
Period size: 40 Copynumber: 3.3 Consensus size: 39
48447039 GGACTAAGAT
* * *
48447049 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
*
48447089 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * *
48447129 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
48447168 CCGAAGGCATT
1 CCGAAGGCATT
48447179 TGAACGAGGA
Statistics
Matches: 81, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 38 0.47
40 43 0.53
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:48449417 original size:28 final size:28
Alignment explanation
Indices: 48449356--48449410 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
48449346 GTCCCTGGCC
*
48449356 CGTGTC-CGTCACATGGCCTAAACACGCT
1 CGTGTCTC-TCACACGGCCTAAACACGCT
*
48449384 CGTGTCTCTCACACGGCCTAGACACGC
1 CGTGTCTCTCACACGGCCTAAACACGC
48449411 CTGTGTCATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 23 0.96
29 1 0.04
ACGTcount: A:0.20, C:0.38, G:0.22, T:0.20
Consensus pattern (28 bp):
CGTGTCTCTCACACGGCCTAAACACGCT
Found at i:48461135 original size:45 final size:45
Alignment explanation
Indices: 48461021--48461136 Score: 153
Period size: 45 Copynumber: 2.6 Consensus size: 45
48461011 AATGAAACCG
* * *
48461021 GACCAACTCAATGAGCTCGGA-TGCTTCACATATATCACGAACTTG
1 GACCAACTCAACGAGCTCGGATTTC-TCACATATATCACGAACTTA
* * **
48461066 GACCAACTCAACAAGTTCAAATTTCTCACATATATCACGAACTTA
1 GACCAACTCAACGAGCTCGGATTTCTCACATATATCACGAACTTA
48461111 GACCAACTCAACGAGCTCGGATTTCT
1 GACCAACTCAACGAGCTCGGATTTCT
48461137 AAATTCCTAG
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 57 0.97
46 2 0.03
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.25
Consensus pattern (45 bp):
GACCAACTCAACGAGCTCGGATTTCTCACATATATCACGAACTTA
Found at i:48463861 original size:42 final size:41
Alignment explanation
Indices: 48463812--48463920 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 41
48463802 TTGATGCCTC
*
48463812 TGTCCCAGACA-GAGTCTTACACGAAA-TCAGATACGATG-TTG
1 TGTCCCAGACACG-GTCTTACACGAAACTCA-AT-CGAGGCTTG
* *
48463853 ATGTCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCTTG
1 -TGTCCCAGACACGGTCTTACACG-AAA-CTCAATCGAGGCTTG
48463897 TGTCCCAGACACGGTCTTACACGA
1 TGTCCCAGACACGGTCTTACACGA
48463921 TATCTGAGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 10
0.81 0.06 0.14
Matches are distributed among these distances:
42 21 0.36
43 29 0.50
44 5 0.09
45 3 0.05
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (41 bp):
TGTCCCAGACACGGTCTTACACGAAACTCAATCGAGGCTTG
Found at i:48481010 original size:47 final size:47
Alignment explanation
Indices: 48480924--48481042 Score: 139
Period size: 47 Copynumber: 2.5 Consensus size: 47
48480914 TATTTGAATA
* * * *
48480924 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGACAAGGCCGAATGGCCAACGTGATG
* * *
48480973 AATGTGAAAGCGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATG
* *
48481020 GATGTGAAAGTGTATAAATGTGA
1 AATGTGAAAGTGTATATATGTGA
48481043 TAAGTCCCGA
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
47 49 0.82
49 11 0.18
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATG
Found at i:48487253 original size:48 final size:48
Alignment explanation
Indices: 48487167--48487298 Score: 169
Period size: 48 Copynumber: 2.8 Consensus size: 48
48487157 ATGTGTTATG
* * *
48487167 TGTGATCCCATGTAAGACCACGTCTTGGACATGGCATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCAATA
* * *
48487215 TGTGATCCCATGTAAGACCATATCTGGGATATGACATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCAATA
**
48487263 TGTGAT--TTTGTGAAGACCATGTCTGGGACATGACAT
1 TGTGATCCCATGT-AAGACCATGTCTGGGACATGACAT
48487299 CGATATGAGA
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
46 3 0.04
47 22 0.30
48 48 0.66
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCAATA
Found at i:48490610 original size:20 final size:20
Alignment explanation
Indices: 48490587--48490648 Score: 70
Period size: 25 Copynumber: 2.9 Consensus size: 20
48490577 CTCGTTCCAC
48490587 ATTCAATTTAAAGACATACA
1 ATTCAATTTAAAGACATACA
*
48490607 ATTCAATGTCAAGTAAACACATACA
1 ATTCAAT-T----TAAAGACATACA
48490632 ATTCAATTTAAAGACAT
1 ATTCAATTTAAAGACAT
48490649 TTATTTGCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
20 15 0.43
21 1 0.03
24 1 0.03
25 18 0.51
ACGTcount: A:0.48, C:0.16, G:0.06, T:0.29
Consensus pattern (20 bp):
ATTCAATTTAAAGACATACA
Found at i:48492188 original size:41 final size:43
Alignment explanation
Indices: 48492121--48492244 Score: 139
Period size: 41 Copynumber: 2.9 Consensus size: 43
48492111 GACACCGATA
*
48492121 TATGTGGTTACGTGTAAGACCATGTCTGGGACA-TCGGCATC-G
1 TATGTGATTACGTGTAAGACCATGTCTGGGACAGT-GGCATCGG
* * *
48492163 TATTTGATT-CGTGTAAGACCTTGTCTGGGATAGTGGCATCGG
1 TATGTGATTACGTGTAAGACCATGTCTGGGACAGTGGCATCGG
* * *
48492205 TATGTGATTACATGTAAGACCACGTCTAGGAC-GTTGGCAT
1 TATGTGATTACGTGTAAGACCATGTCTGGGACAG-TGGCAT
48492245 TGTACAATAT
Statistics
Matches: 68, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
41 27 0.40
42 18 0.26
43 23 0.34
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (43 bp):
TATGTGATTACGTGTAAGACCATGTCTGGGACAGTGGCATCGG
Found at i:48493763 original size:28 final size:29
Alignment explanation
Indices: 48493709--48493768 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
48493699 ATTTATTCCA
* *
48493709 CAATTTAACTCCTTAATTTACACTTTTCT
1 CAATTTAACTCCCTAATTGACACTTTTCT
* *
48493738 CAATTTAA-TCCCTAATTGACATTTTTGT
1 CAATTTAACTCCCTAATTGACACTTTTCT
48493766 CAA
1 CAA
48493769 AAATCACTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 19 0.70
29 8 0.30
ACGTcount: A:0.30, C:0.22, G:0.03, T:0.45
Consensus pattern (29 bp):
CAATTTAACTCCCTAATTGACACTTTTCT
Found at i:48497404 original size:93 final size:93
Alignment explanation
Indices: 48497245--48497417 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
48497235 CGCCCATAAG
** * * *
48497245 CGAACTCGGGCTCAAATCAACGATCTCGGGCGTTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAAATCAACGATCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
48497310 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* *
48497338 CGAACTCGAACTCAACTCAACGAGT-TCGGACATTCGCATCCATAAGTGAACTGGGACTCAACTC
1 CGAACTCGAACTCAAATCAACGA-TCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
48497402 AACGAGTTCGGATGCC
65 AACGAGTTCGGATGCC
48497418 CAAATATCCC
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGAACTCAAATCAACGATCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:48497406 original size:46 final size:46
Alignment explanation
Indices: 48497238--48497413 Score: 155
Period size: 46 Copynumber: 3.8 Consensus size: 46
48497228 TGTAACCCGC
* * * *
48497238 CCATAAGCGAACTCGGGCTCAAATCAACGA-TCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGT-TCGGACATTCGCAT
* * *
48497284 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
48497334 --TTCA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
48497377 CCATAAGTGAACTGGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
48497414 TGCCCAAATA
Statistics
Matches: 102, Mismatches: 18, Indels: 20
0.73 0.13 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 57 0.56
47 29 0.28
48 1 0.01
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:48499887 original size:15 final size:15
Alignment explanation
Indices: 48499811--48499887 Score: 50
Period size: 15 Copynumber: 5.1 Consensus size: 15
48499801 GAAAACCGAT
*
48499811 TAAAGAAATCCAAGA
1 TAAAGAAACCCAAGA
* *
48499826 TAGAGAAACCC-GGAA
1 TAAAGAAACCCAAG-A
* *
48499841 TAAAGAAA-TCTAGAA
1 TAAAGAAACCCAAG-A
* * *
48499856 TAAAGAGATCCAGGA
1 TAAAGAAACCCAAGA
48499871 TAAAGAAACCCAAGA
1 TAAAGAAACCCAAGA
48499886 TA
1 TA
48499888 CGATACTATG
Statistics
Matches: 46, Mismatches: 13, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
14 2 0.04
15 42 0.91
16 2 0.04
ACGTcount: A:0.55, C:0.14, G:0.18, T:0.13
Consensus pattern (15 bp):
TAAAGAAACCCAAGA
Found at i:48501744 original size:47 final size:47
Alignment explanation
Indices: 48501690--48502141 Score: 653
Period size: 47 Copynumber: 9.6 Consensus size: 47
48501680 TATTTGAATA
* *
48501690 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATG
1 AATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
48501737 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
48501784 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
48501831 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
48501878 AATGTGAACATGTGTATGTGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
48501925 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
48501972 AATGTGAA-AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
48502021 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
48502068 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
48502115 GATGTGGAA-GTGTATAAATGTGATAAG
1 AATGT-GAACATGTATATATGTGATAAG
48502142 TCCCGAAGGG
Statistics
Matches: 381, Mismatches: 17, Indels: 14
0.92 0.04 0.03
Matches are distributed among these distances:
46 2 0.01
47 329 0.86
48 4 0.01
49 45 0.12
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:48501870 original size:141 final size:141
Alignment explanation
Indices: 48501690--48502141 Score: 719
Period size: 141 Copynumber: 3.2 Consensus size: 141
48501680 TATTTGAATA
* *
48501690 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAACATGTGTATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
* *
48501755 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATG
48501819 GCCAATGTGATG
130 GCCAATGTGATG
* *
48501831 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTAT
* *
48501895 GTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
65 GTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
48501960 GCCAATGTGATG
130 GCCAATGTGATG
**
48501972 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
* *
48502037 TATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
64 TGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
48502102 GGCCAATGTGATG
129 GGCCAATGTGATG
* * *
48502115 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
48502142 TCCCGAAGGG
Statistics
Matches: 287, Mismatches: 19, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
140 2 0.01
141 153 0.53
142 1 0.00
143 131 0.46
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
CCAATGTGATG
Found at i:48502019 original size:22 final size:22
Alignment explanation
Indices: 48501991--48502113 Score: 63
Period size: 22 Copynumber: 5.3 Consensus size: 22
48501981 GTGTATATAT
48501991 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
48502013 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
*
48502037 TATGAGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * ***
48502060 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
48502084 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
48502107 ATGTGAT
1 ATGTGAT
48502114 GGATGTGGAA
Statistics
Matches: 71, Mismatches: 18, Indels: 24
0.63 0.16 0.21
Matches are distributed among these distances:
22 22 0.31
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:48510793 original size:24 final size:24
Alignment explanation
Indices: 48510766--48510828 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
48510756 AAGTGTACAT
* *
48510766 TGGCACTATGTGTGCGGTGTAGTA
1 TGGCACTATGTGTGCGGAGTAGAA
* * *
48510790 TGGCACAATGTGTCCGGAGTTGAA
1 TGGCACTATGTGTGCGGAGTAGAA
*
48510814 TAGCACTATGTGTGC
1 TGGCACTATGTGTGC
48510829 TGATTTGAAT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGAGTAGAA
Found at i:48522086 original size:53 final size:53
Alignment explanation
Indices: 48521912--48522115 Score: 140
Period size: 53 Copynumber: 3.8 Consensus size: 53
48521902 AGGGTTTAAG
* * * * * * * *
48521912 GATACCAAGTAAGACCATGCCAAGGCATGACATTGGTAGGTTTTACAAGGCAAG
1 GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAAA
* * * * * * * *
48521966 GAAATCATG-ATAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAA
1 GATACCACGTA-AGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAA
* ** * * * *
48522021 GATCCCTTGTAAGACCATGCCAAGGCATGGTAATGGTGAGTTCATAAGGCAAG
1 GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
* *
48522074 GATACCACGTAAGACCGTGTCAAGACATGGCAATGGTAAGTT
1 GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
48522116 TAAAAAAGAA
Statistics
Matches: 112, Mismatches: 34, Indels: 9
0.72 0.22 0.06
Matches are distributed among these distances:
53 44 0.39
54 32 0.29
55 35 0.31
56 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
GATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
Found at i:48526127 original size:39 final size:39
Alignment explanation
Indices: 48526084--48526272 Score: 128
Period size: 39 Copynumber: 4.8 Consensus size: 39
48526074 CTATGGGACT
* *
48526084 TTAAGCCCGGATATAGTACCAGTACGAAGGCTACAGACC
1 TTAAGCCCGGATATAGTACCAGCACGAAGCCTACAGACC
* * * *
48526123 TTAAGTCTC-GATATAGTACCAGCACGAAGCCTGCGGATC
1 TTAAG-CCCGGATATAGTACCAGCACGAAGCCTACAGACC
* * * * * * * * *
48526162 TTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCT
1 TTAAGCCCGGATATAGTACCAGCACGAAGCCTAC-AGACC
* * * * *
48526202 TTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACC
1 TTAAGCCCGGATATAGTACCAGCACGAAGCCTACAGACC
** * * *
48526241 TTAAGTTCGGATACAATTCCAGCACGAAGCCT
1 TTAAGCCCGGATATAGTACCAGCACGAAGCCT
48526273 GCGGGTCTTT
Statistics
Matches: 126, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
38 1 0.01
39 89 0.71
40 36 0.29
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.21
Consensus pattern (39 bp):
TTAAGCCCGGATATAGTACCAGCACGAAGCCTACAGACC
Found at i:48526217 original size:40 final size:40
Alignment explanation
Indices: 48526141--48526335 Score: 268
Period size: 40 Copynumber: 4.9 Consensus size: 40
48526131 CGATATAGTA
* *
48526141 CCAGCACGAAGCCTGCGGATC-TTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
*
48526180 CCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* * **
48526220 CCAGCACGAAGCCTGC-GGACCTTAAGTTCGGATACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* *
48526259 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATATAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
* * *
48526299 GCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACA
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
48526336 CATCAAATAT
Statistics
Matches: 135, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 54 0.40
40 81 0.60
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.21
Consensus pattern (40 bp):
CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
Found at i:48526224 original size:79 final size:79
Alignment explanation
Indices: 48526141--48526335 Score: 291
Period size: 79 Copynumber: 2.5 Consensus size: 79
48526131 CGATATAGTA
48526141 CCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAA
*
48526206 GCCCGGATACAATT
66 GCCCAGATACAATT
* * *
48526220 CCAGCACGAAGCCTGCGGACCTTAAGTTCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAA
*
48526285 GCCCAGATATAATT
66 GCCCAGATACAATT
* * * * *
48526299 GCAGCACAAAGCCTGTGGGTCTTTAAGCCCGGATACA
1 CCAGCACGAAGCCTGCGGATC-TTAAGTCCGGATACA
48526336 CATCAAATAT
Statistics
Matches: 103, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 90 0.87
80 13 0.13
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.21
Consensus pattern (79 bp):
CCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAA
GCCCAGATACAATT
Found at i:48526273 original size:39 final size:39
Alignment explanation
Indices: 48526119--48526313 Score: 212
Period size: 39 Copynumber: 4.9 Consensus size: 39
48526109 GAAGGCTACA
* * *
48526119 GACCTTAAGTCTC-GATATAGTACCAGCACGAAGCCTGCG
1 GACCTTAAGTC-CGGATACAATTCCAGCACGAAGCCTGCG
* *
48526158 GATCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGG
1 GACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGC-G
* * *
48526198 GTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCG
1 GACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCG
*
48526237 GACCTTAAGTTCGGATACAATTCCAGCACGAAGCCTGCGG
1 GACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGC-G
* * * * * * *
48526277 GTCTTTAAGCCCAGATATAATTGCAGCACAAAGCCTG
1 GACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTG
48526314 TGGGTCTTTA
Statistics
Matches: 131, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
38 1 0.01
39 66 0.50
40 64 0.49
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.21
Consensus pattern (39 bp):
GACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCG
Found at i:48533070 original size:39 final size:39
Alignment explanation
Indices: 48533011--48533202 Score: 168
Period size: 39 Copynumber: 4.9 Consensus size: 39
48533001 TACGGGACTT
* * * *
48533011 TAAGCCCGGATATAGTACCAGTACGAAGCTTGCGGACCT
1 TAAGTCCGGATATAGTACCAGCACGAAGCCTGCGGACCG
* *
48533050 TATGTCCGGATATAGTACCAGCACGAAGCCTGCGGATCG
1 TAAGTCCGGATATAGTACCAGCACGAAGCCTGCGGACCG
* * ****
48533089 TAAGTCCGGATATAATTCCAGCACGAAGCCTGCGGGTTTT
1 TAAGTCCGGATATAGTACCAGCACGAAGCCTGC-GGACCG
* * * * * * *
48533129 TAAGCCCGGATACAATTCCAGCATGAAGCCTGCAGACCT
1 TAAGTCCGGATATAGTACCAGCACGAAGCCTGCGGACCG
* * * *
48533168 TAAGTCCAGATACAATTCCAGCACGAAGCCTGCGG
1 TAAGTCCGGATATAGTACCAGCACGAAGCCTGCGG
48533203 GTCTTTAAGC
Statistics
Matches: 129, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 96 0.74
40 33 0.26
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21
Consensus pattern (39 bp):
TAAGTCCGGATATAGTACCAGCACGAAGCCTGCGGACCG
Found at i:48533149 original size:40 final size:40
Alignment explanation
Indices: 48532996--48533301 Score: 280
Period size: 40 Copynumber: 7.7 Consensus size: 40
48532986 CACCAACACA
* * * * * *
48532996 AAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
* * * * * * * *
48533036 AAGCTTGC-GGACCTTATGTCCGGATATAGTACCAGCACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
* * * *
48533075 AAGCCTGCGGATC-GTAAGTCCGGATATAATTCCAGCACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
* *
48533114 AAGCCTGCGGGTTTTTAAGCCCGGATACAATTCCAGCATG
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
* * * * *
48533154 AAGCCTGC-AGACCTTAAGTCCAGATACAATTCCAGCACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
* * * *
48533193 AAGCCTGCGGGTCTTTAAGCCCGAATATAATTCTAGCACA
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
* *
48533233 AAGCCGGTGGGTCTTTAAGCCCGGATACAATTCCAG--CG
1 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
48533271 TATAGCCTGCGGGTCTTTAAGCCCGGATACA
1 -A-AGCCTGCGGGTCTTTAAGCCCGGATACA
48533302 CATCAAATAT
Statistics
Matches: 218, Mismatches: 43, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
38 1 0.00
39 100 0.46
40 117 0.54
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.22
Consensus pattern (40 bp):
AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
Found at i:48533157 original size:79 final size:79
Alignment explanation
Indices: 48533067--48533301 Score: 294
Period size: 79 Copynumber: 3.0 Consensus size: 79
48533057 GGATATAGTA
* * *
48533067 CCAGCACGAAGCCTGCGGATCGTAAGTCCGGATATAATTCCAGCACGAAGCCTGCGGGTTTTTAA
1 CCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
48533132 GCCCGGATACAATT
66 GCCCGGATACAATT
* * * *
48533146 CCAGCATGAAGCCTGCAGACCTTAAGTCCAGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
* *
48533211 GCCCGAATATAATT
66 GCCCGGATACAATT
* * * * * *
48533225 CTAGCACAAAGCCGGTGGGTCTTTAAGCCCGGATACAATTCCAG--CGTATAGCCTGCGGGTCTT
1 CCAGCACGAAGCCTGCGGATC-TTAAGTCCGGATACAATTCCAGCACG-A-AGCCTGCGGGTCTT
48533288 TAAGCCCGGATACA
63 TAAGCCCGGATACA
48533302 CATCAAATAT
Statistics
Matches: 132, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
78 2 0.02
79 84 0.64
80 46 0.35
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (79 bp):
CCAGCACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
GCCCGGATACAATT
Found at i:48533280 original size:119 final size:118
Alignment explanation
Indices: 48532992--48533269 Score: 331
Period size: 118 Copynumber: 2.3 Consensus size: 118
48532982 CAATCACCAA
** * * * * * * * * *
48532992 CACAAAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTACGAAGCTTGCGGACCTTATGTCC
1 CACAAAGCCGGCGGGTCTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCAGACCTTAAGTCC
* * * * * *
48533057 GGATATAGTACCAGCACGAAGCCTGCGGATCGTAAGTCCGGATATAATTCCAG
66 AGATACAATTCCAGCACGAAGCCTGCGGATCGTAAGCCCGAATATAATTCCAG
* * *
48533110 CACGAAGCCTGCGGGTTTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCAGACCTTAAGTCC
1 CACAAAGCCGGCGGGTCTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCAGACCTTAAGTCC
* * *
48533175 AGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGAATATAATTCTAG
66 AGATACAATTCCAGCACGAAGCCTGCGGATC-GTAAGCCCGAATATAATTCCAG
*
48533229 CACAAAGCCGGTGGGTCTTTAAGCCCGGATACAATTCCAGC
1 CACAAAGCCGGCGGGTCTTTAAGCCCGGATACAATTCCAGC
48533270 GTATAGCCTG
Statistics
Matches: 134, Mismatches: 25, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
118 79 0.59
119 55 0.41
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (118 bp):
CACAAAGCCGGCGGGTCTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCAGACCTTAAGTCC
AGATACAATTCCAGCACGAAGCCTGCGGATCGTAAGCCCGAATATAATTCCAG
Found at i:48543148 original size:357 final size:358
Alignment explanation
Indices: 48542493--48543585 Score: 2071
Period size: 357 Copynumber: 3.1 Consensus size: 358
48542483 CATATTATTA
48542493 GGTATGTTTTTGAATATGGAATTGAGTAGTTGAATTATATGTTTGAGAAAATGTTTTGAGTCATG
1 GGTATGTTTTTGAATATGGAATTGAGTAGTTGAATTATATGTTTGAGAAAATGTTTTGAGTCATG
48542558 ATATTAGGCATGAATTTGGCTTGTAAATGTTGGTGTATACAACCATTTAAGTTGGCTTGAATTAT
66 ATATTAGGCATGAATTTGGCTTGTAAATGTTGGTGTATACAACCATTTAAGTTGGCTTGAATTAT
48542623 ATGTTTGATGAATGTTATATGTGATGTATATGATGTCCTAAGTGTTGCTTCCTTGAAATGGTTGT
131 ATGTTTGATGAATGTTATATGTGATGTATATGATGTCCTAAGTGTTGCTTCCTTGAAATGGTTGT
48542688 ATGGATGCTCTTTTGGTTAGTTATTGGTTGATGTATTAATGCTTGAGGAATGGTAAATTTTGGTA
196 ATGGATGCTCTTTTGGTTAGTTATTGGTTGATGTATTAATGCTTGAGGAATGGTAAATTTTGGTA
48542753 TGATTTGTGGATGATGAAGTGGTATGTTTGAGAAGTATAATTTGGTTGATAGAAAGGTGAGAAAA
261 TGATTTGTGGATGATGAAGTGGTATGTTTGAGAAGTATAATTTGGTTGATAGAAAGGTGAGAAAA
48542818 TG-ATTTAGAAGTTATGTAAGTTGTGATGAATT
326 TGCATTTAGAAGTTATGTAAGTTGTGATGAATT
48542850 GGTATGTTTTTGAATATGGAATTGAGTAGTTGAATTATATGTTTGAGAAAATGTTTTGAGTCATG
1 GGTATGTTTTTGAATATGGAATTGAGTAGTTGAATTATATGTTTGAGAAAATGTTTTGAGTCATG
48542915 ATATTAGGCATGAATTTGGCTTGTAAATGTTGGTGTATACAACCATTTAAGTTGGCTTGAATTAT
66 ATATTAGGCATGAATTTGGCTTGTAAATGTTGGTGTATACAACCATTTAAGTTGGCTTGAATTAT
48542980 ATGTTTGATGAATGTTATATGTGATGTATATGATGTCCTAAGTGTTGCTTCCTTGAAATGGTTGT
131 ATGTTTGATGAATGTTATATGTGATGTATATGATGTCCTAAGTGTTGCTTCCTTGAAATGGTTGT
48543045 ATGGATGCTCTTTTGGTTAGTTATTGGTTGATGTATTAATGCTTGAGGAATGGTAAATTTTGGTA
196 ATGGATGCTCTTTTGGTTAGTTATTGGTTGATGTATTAATGCTTGAGGAATGGTAAATTTTGGTA
48543110 TGATTTGTGGATGATGAAGTGGTATGTTTGAGAAGTATAATTTGGTTGATAGAAAGGTGAGAAAA
261 TGATTTGTGGATGATGAAGTGGTATGTTTGAGAAGTATAATTTGGTTGATAGAAAGGTGAGAAAA
48543175 TGCATTTAGAAGTTATGTAAGTTGTGATGAATT
326 TGCATTTAGAAGTTATGTAAGTTGTGATGAATT
48543208 GGTATGTTTTTGAATATGGAATTGAGTAGTTGAATTATATGTTTGAGAAAATGTTTTGAGTCATG
1 GGTATGTTTTTGAATATGGAATTGAGTAGTTGAATTATATGTTTGAGAAAATGTTTTGAGTCATG
* *** * *
48543273 ATATTAGGCATGAACTTGGCTTGTAAATGTTGGTGTATATGGCCGTTTAAGTTGGCTTGGATTAT
66 ATATTAGGCATGAATTTGGCTTGTAAATGTTGGTGTATACAACCATTTAAGTTGGCTTGAATTAT
*
48543338 ATGTTTGATGAATGTTATATGTGATGTATATGATGTCCTAAGTGTTGGCTTGCTTGAAATGGTTG
131 ATGTTTGATGAATGTTATATGTGATGTATATGATGTCCTAAGTGTT-GCTTCCTTGAAATGGTTG
*
48543403 TATGGGTGCTCTTTTGGTTAGTTATTGGTTGATGTATTAATGCTTGAGGAATGGTAAATTTTGGT
195 TATGGATGCTCTTTTGGTTAGTTATTGGTTGATGTATTAATGCTTGAGGAATGGTAAATTTTGGT
* *
48543468 ATGATTTGAGGATGATGAAGTGGTATGTTTAAGAAGTATAATTTGGTTGATAGAAAGGTGAGAAA
260 ATGATTTGTGGATGATGAAGTGGTATGTTTGAGAAGTATAATTTGGTTGATAGAAAGGTGAGAAA
*
48543533 ATGCATTTAGAAGTTATGTAAGTTGTGATGATTT
325 ATGCATTTAGAAGTTATGTAAGTTGTGATGAATT
48543567 GGTATGTTTTTGAATATGG
1 GGTATGTTTTTGAATATGG
48543586 CATGATATGT
Statistics
Matches: 723, Mismatches: 11, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
357 327 0.45
358 200 0.28
359 196 0.27
ACGTcount: A:0.27, C:0.04, G:0.27, T:0.41
Consensus pattern (358 bp):
GGTATGTTTTTGAATATGGAATTGAGTAGTTGAATTATATGTTTGAGAAAATGTTTTGAGTCATG
ATATTAGGCATGAATTTGGCTTGTAAATGTTGGTGTATACAACCATTTAAGTTGGCTTGAATTAT
ATGTTTGATGAATGTTATATGTGATGTATATGATGTCCTAAGTGTTGCTTCCTTGAAATGGTTGT
ATGGATGCTCTTTTGGTTAGTTATTGGTTGATGTATTAATGCTTGAGGAATGGTAAATTTTGGTA
TGATTTGTGGATGATGAAGTGGTATGTTTGAGAAGTATAATTTGGTTGATAGAAAGGTGAGAAAA
TGCATTTAGAAGTTATGTAAGTTGTGATGAATT
Found at i:48549292 original size:21 final size:20
Alignment explanation
Indices: 48549268--48549306 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
48549258 AAACCTGTAT
48549268 ATCTATCAACAAACATTCATA
1 ATCTATCAACAAAC-TTCATA
*
48549289 ATCTATCAAGAAACTTCA
1 ATCTATCAACAAACTTCA
48549307 AAATACACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.23, G:0.03, T:0.28
Consensus pattern (20 bp):
ATCTATCAACAAACTTCATA
Found at i:48550310 original size:20 final size:20
Alignment explanation
Indices: 48550272--48550310 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
48550262 TGATTGATTA
* *
48550272 TGATTGAATTATATTTGAAT
1 TGATTAAATTATATGTGAAT
*
48550292 TGATTAAATTGTATGTGAA
1 TGATTAAATTATATGTGAA
48550311 ATGTATGTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (20 bp):
TGATTAAATTATATGTGAAT
Found at i:48552243 original size:79 final size:81
Alignment explanation
Indices: 48552107--48552291 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
48552097 TTGAATGATG
* *
48552107 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
48552171 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
48552186 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
48552248 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
48552266 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
48552292 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:48552305 original size:40 final size:40
Alignment explanation
Indices: 48552108--48552291 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
48552098 TGAATGATGT
* * * *
48552108 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
48552148 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
48552188 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
48552226 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
48552267 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
48552292 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:48552313 original size:79 final size:79
Alignment explanation
Indices: 48552160--48552324 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
48552150 GGACTAAGAT
* * **
48552160 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
48552225 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
48552239 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
48552302 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
48552318 CCGAAGG
1 CCGAAGG
48552325 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:48559619 original size:39 final size:40
Alignment explanation
Indices: 48559524--48559746 Score: 273
Period size: 39 Copynumber: 5.7 Consensus size: 40
48559514 TTGAATGATG
*
48559524 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
48559562 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
48559603 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
48559642 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
48559681 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
48559720 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
48559747 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
39 93 0.56
40 61 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:48559710 original size:79 final size:81
Alignment explanation
Indices: 48559524--48559746 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
48559514 TTGAATGATG
* * *
48559524 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
48559585 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
48559603 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
48559665 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
48559681 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
48559745 TG
66 TG
48559747 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:48559768 original size:79 final size:79
Alignment explanation
Indices: 48559524--48559779 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
48559514 TTGAATGATG
* * * *
48559524 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
48559585 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
48559603 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
48559667 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
48559681 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
48559745 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
48559761 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
48559780 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 45 0.29
79 70 0.46
80 36 0.24
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:48568195 original size:26 final size:26
Alignment explanation
Indices: 48568166--48568217 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
48568156 TGGGAGTCTA
*
48568166 GCTATACATGCCATACATATAAACTG
1 GCTATACATACCATACATATAAACTG
*
48568192 GCTATACATATCATACATATAAACTG
1 GCTATACATACCATACATATAAACTG
48568218 TGATAGTGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (26 bp):
GCTATACATACCATACATATAAACTG
Found at i:48576010 original size:46 final size:44
Alignment explanation
Indices: 48575957--48576122 Score: 156
Period size: 46 Copynumber: 3.6 Consensus size: 44
48575947 AGATTTGTGT
*
48575957 GCCAGTGTAAGACATGTCTGGGACATGCATTGGCCGCATTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATT--CCGCATTATGAGA
*
48576003 GCCAGTGTAAGACCATGTCTGGGACATAGCA-TCGGCATTGA-GACGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATTCCGCATT-ATGA-GA
* * * * *
48576049 GGGCTAGTGTAAGACATGTATGGGACATGCATCAACCACAGTATGAGA
1 --GCCAGTGTAAGACATGTCTGGGACATGCAT--TCCGCATTATGAGA
*
48576097 GCCAGTGTAAAACATGTCTGGGACAT
1 GCCAGTGTAAGACATGTCTGGGACAT
48576123 ACATCGACCT
Statistics
Matches: 99, Mismatches: 11, Indels: 20
0.76 0.08 0.15
Matches are distributed among these distances:
45 8 0.08
46 40 0.40
47 28 0.28
48 17 0.17
49 6 0.06
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATTCCGCATTATGAGA
Found at i:48576078 original size:94 final size:92
Alignment explanation
Indices: 48575960--48576128 Score: 248
Period size: 94 Copynumber: 1.8 Consensus size: 92
48575950 TTTGTGTGCC
* *** * * * *
48575960 AGTGTAAGACATGTCTGGGACATGCATTGGCCGCATTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTATGGGACATGCATCAACCACAGTATGAGAGCCAGTGTAA-AACATGTCTGG
48576025 GACATAGCATCGGCATTGAGACGAGGGCT
65 GACATA-CATCGGCATTGAGACGAGGGCT
48576054 AGTGTAAGACATGTATGGGACATGCATCAACCACAGTATGAGAGCCAGTGTAAAACATGTCTGGG
1 AGTGTAAGACATGTATGGGACATGCATCAACCACAGTATGAGAGCCAGTGTAAAACATGTCTGGG
48576119 ACATACATCG
66 ACATACATCG
48576129 ACCTCGAGAT
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
92 5 0.07
93 16 0.24
94 46 0.69
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.22
Consensus pattern (92 bp):
AGTGTAAGACATGTATGGGACATGCATCAACCACAGTATGAGAGCCAGTGTAAAACATGTCTGGG
ACATACATCGGCATTGAGACGAGGGCT
Found at i:48576146 original size:46 final size:46
Alignment explanation
Indices: 48575957--48576168 Score: 144
Period size: 46 Copynumber: 4.6 Consensus size: 46
48575947 AGATTTGTGT
* * * * * *
48575957 GCCAGTGTAAGACATGTCTGGGACATGCATTGGCCGCA-TTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATACATCGACCTCAGATAT-AGA
* * * ** *
48576003 GCCAGTGTAAGACCATGTCTGGGACATAGCATCGGCATTGAGA-CGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACATA-CATCGAC-CTCAGATATAGA
* * * * *
48576051 GCTAGTGTAAGACATGTATGGGACATGCATCAACCACAG-TATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATACATCGACCTCAGATAT-AGA
* *
48576097 GCCAGTGTAAAACATGTCTGGGACATACATCGACCTCGAGATAT-TA
1 GCCAGTGTAAGACATGTCTGGGACATACATCGACCTC-AGATATAGA
* * *
48576143 GCCAGTGTCAGACATGTTTGGAACAT
1 GCCAGTGTAAGACATGTCTGGGACAT
48576169 GTGTCGGCTA
Statistics
Matches: 126, Mismatches: 32, Indels: 16
0.72 0.18 0.09
Matches are distributed among these distances:
45 2 0.02
46 73 0.58
47 29 0.23
48 21 0.17
49 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATACATCGACCTCAGATATAGA
Found at i:48576220 original size:44 final size:44
Alignment explanation
Indices: 48575958--48576220 Score: 106
Period size: 46 Copynumber: 5.8 Consensus size: 44
48575948 GATTTGTGTG
* * *
48575958 CCAGTGTAAGACATGTCTGGGACATGCATTGGC-CGCA-TTATGATA
1 CCAGTGTAAGACATGTCTAGGACATGCATCGGCTCG-AGATAT--TA
* * * ***
48576003 GCCAGTGTAAGACCATGTCTGGGACATAGCATCGGCATTGAGACGAGGG
1 -CCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGC-TCGAGA-TATTA
* * * ** * *
48576052 CTAGTGTAAGACATGTATGGGACATGCATCAAC-C-ACAGTATGAGA
1 CCAGTGTAAGACATGTCTAGGACATGCATCGGCTCGAGA-TAT--TA
* * * *
48576097 GCCAGTGTAAAACATGTCTGGGACATACATCGACCTCGAGATATTA
1 -CCAGTGTAAGACATGTCTAGGACATGCATCG-GCTCGAGATATTA
* * ** *
48576143 GCCAGTGTCAGACATGT-TTGGAACATGTGTCGGCTACGAGATGTT-
1 -CCAGTGTAAGACATGTCTAGG-ACATGCATCGGCT-CGAGATATTA
*
48576188 CTAGTGTAAGACATGTCTAGGACATGCATCGGC
1 CCAGTGTAAGACATGTCTAGGACATGCATCGGC
48576221 ATGGTTACAT
Statistics
Matches: 164, Mismatches: 38, Indels: 32
0.70 0.16 0.14
Matches are distributed among these distances:
43 3 0.02
44 24 0.15
45 9 0.05
46 74 0.45
47 28 0.17
48 21 0.13
49 3 0.02
50 1 0.01
51 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (44 bp):
CCAGTGTAAGACATGTCTAGGACATGCATCGGCTCGAGATATTA
Found at i:48582646 original size:79 final size:81
Alignment explanation
Indices: 48582509--48582691 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
48582499 TTGAATGATG
* * *
48582509 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATT
48582573 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * *
48582588 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCA
48582650 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
48582668 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
48582692 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:48582707 original size:40 final size:40
Alignment explanation
Indices: 48582510--48582693 Score: 232
Period size: 40 Copynumber: 4.6 Consensus size: 40
48582500 TGAATGATGT
* * * * *
48582510 CCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
48582550 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
48582590 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
48582629 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
48582669 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
48582694 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
39 35 0.27
40 85 0.66
41 8 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:48582724 original size:79 final size:79
Alignment explanation
Indices: 48582561--48582726 Score: 203
Period size: 79 Copynumber: 2.1 Consensus size: 79
48582551 CGGACTAAGA
* **
48582561 TCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTA
1 TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTA
*
48582626 TAACCGGGCTAAGT
66 TAACCGGGCTAAAT
* * *
48582640 CCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 TCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-
* *
48582703 CTATATCC-GGTTAAAT
63 CTATAACCGGGCTAAAT
48582719 TCCGAAGG
1 TCCGAAGG
48582727 TACGTGATTT
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTA
TAACCGGGCTAAAT
Found at i:48586595 original size:49 final size:49
Alignment explanation
Indices: 48586537--48586709 Score: 188
Period size: 49 Copynumber: 3.5 Consensus size: 49
48586527 GGTACGCATT
* * *
48586537 GTAGCCTGCACTTAGTACTACACATTCGACCAATAATCTGGTAGACGTA
1 GTAGCCTGCACTTAGTACTACACATTCGACCAATTATCCGGTAGACATA
* * * *
48586586 GTAGCCTGCACTTAGTACTACACACGT-GATCACAGTTTTCGGGTACG-CATA
1 GTAGCCTGCACTTAGTACTACACA-TTCGA-C-CAATTATCCGGTA-GACATA
* * *
48586637 GTAGCCTGCACTTAGTACTGCACATGCGACCAATTATCCGGTACACATA
1 GTAGCCTGCACTTAGTACTACACATTCGACCAATTATCCGGTAGACATA
* *
48586686 GCAGCCTACACTTAGTACTACACA
1 GTAGCCTGCACTTAGTACTACACA
48586710 CGTGACCTCA
Statistics
Matches: 102, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
49 61 0.60
50 3 0.03
51 37 0.36
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
GTAGCCTGCACTTAGTACTACACATTCGACCAATTATCCGGTAGACATA
Found at i:48586644 original size:100 final size:100
Alignment explanation
Indices: 48586527--48586714 Score: 295
Period size: 100 Copynumber: 1.9 Consensus size: 100
48586517 GAAGCTATCT
* * * * * *
48586527 GGTACGCATTGTAGCCTGCACTTAGTACTACACATTCGACCAATAATCTGGTAGACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACATAGCAGCC
*
48586592 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TACACTTAGTACTACACACGTGATCACAGTTTTCG
* *
48586627 GGTACGCATAGTAGCCTGCACTTAGTACTGCACATGCGACCAATTATCCGGTACACATAGCAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACATAGCAGCC
48586692 TACACTTAGTACTACACACGTGA
66 TACACTTAGTACTACACACGTGA
48586715 CCTCACCATA
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACATAGCAGCC
TACACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:48591762 original size:46 final size:47
Alignment explanation
Indices: 48591571--48591748 Score: 208
Period size: 46 Copynumber: 3.9 Consensus size: 47
48591561 AAACCGCCCC
* *
48591571 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
* *
48591617 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCATCCA
* * *
48591665 TCA-CGAACTCGGACTCAACTTAACGAGTTCGGA-CATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
48591710 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-CATTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTC
48591749 AACCATCCTA
Statistics
Matches: 111, Mismatches: 12, Indels: 18
0.79 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 63 0.57
47 30 0.27
48 3 0.03
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
Found at i:48592196 original size:30 final size:30
Alignment explanation
Indices: 48592162--48592221 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
48592152 ATTTAATACG
48592162 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
48592192 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
48592222 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:48599269 original size:93 final size:93
Alignment explanation
Indices: 48599162--48599332 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
48599152 GCCCCTAAGT
* * *
48599162 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGATCTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
48599227 CGAGTTCGGATGCATAGTTACATTTCAC
66 CGAGTTCGGATGCATAGTTACATTTCAC
* *
48599255 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
48599320 CGAGTTCGGATGC
66 CGAGTTCGGATGC
48599333 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCATAGTTACATTTCAC
Found at i:48599329 original size:46 final size:46
Alignment explanation
Indices: 48599157--48599329 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
48599147 AACCCGCCCC
* * *
48599157 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
* * *
48599203 TAAGTGATCTCGGACTCAACTCAACGAGTTCGGATGCATAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CAT--TCACATCCA
* * *
48599251 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
48599296 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
48599330 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 4 0.04
45 5 0.05
46 60 0.57
47 28 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
Found at i:48599784 original size:30 final size:30
Alignment explanation
Indices: 48599750--48599809 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
48599740 ATTTAATACG
48599750 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
48599780 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
48599810 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:48609674 original size:79 final size:82
Alignment explanation
Indices: 48609563--48609747 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
48609553 GCTACTCGTT
* * *
48609563 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
48609626 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
48609643 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
48609706 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
48609723 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48609748 CATCATTCGA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:48609747 original size:40 final size:40
Alignment explanation
Indices: 48609544--48609747 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
48609534 CGGAATTTAA
** * *
48609544 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGTCATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48609584 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
48609624 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48609663 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
48609703 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
48609743 CCGGA
1 CCGGA
48609748 CATCATTCGA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 93 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:48610994 original size:53 final size:56
Alignment explanation
Indices: 48610877--48611049 Score: 307
Period size: 56 Copynumber: 3.1 Consensus size: 56
48610867 TATTAGTTTA
*
48610877 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
*
48610933 TTGCCCATGCTTCTTATTTTATTTTTCCATT-A-AC-ACATGTTTCATGACATCTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
48610986 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
48611042 TTGCCCAT
1 TTGCCCAT
48611050 CATCCCTTGT
Statistics
Matches: 111, Mismatches: 3, Indels: 6
0.93 0.03 0.05
Matches are distributed among these distances:
53 49 0.44
54 3 0.03
55 3 0.03
56 56 0.50
ACGTcount: A:0.22, C:0.23, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:48616961 original size:79 final size:82
Alignment explanation
Indices: 48616850--48617034 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
48616840 GCTACTCGTT
* * *
48616850 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
48616913 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
48616930 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
48616993 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
48617010 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48617035 CATCATTCGA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:48617034 original size:40 final size:40
Alignment explanation
Indices: 48616831--48617034 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
48616821 CGGAATTTAA
** * *
48616831 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGTCATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48616871 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
48616911 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48616950 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
48616990 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
48617030 CCGGA
1 CCGGA
48617035 CATCATTCGA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 93 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:48618281 original size:53 final size:56
Alignment explanation
Indices: 48618164--48618336 Score: 307
Period size: 56 Copynumber: 3.1 Consensus size: 56
48618154 TATTAGTTTA
*
48618164 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
*
48618220 TTGCCCATGCTTCTTATTTTATTTTTCCATT-A-AC-ACATGTTTCATGACATCTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
48618273 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
48618329 TTGCCCAT
1 TTGCCCAT
48618337 CATCCCTTGT
Statistics
Matches: 111, Mismatches: 3, Indels: 6
0.93 0.03 0.05
Matches are distributed among these distances:
53 49 0.44
54 3 0.03
55 3 0.03
56 56 0.50
ACGTcount: A:0.22, C:0.23, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:48620229 original size:27 final size:27
Alignment explanation
Indices: 48620207--48620272 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
48620197 GGAATGATTA
*
48620207 TTTTACCCTTATGTGGCAAAATGACTG
1 TTTTGCCCTTATGTGGCAAAATGACTG
*
48620234 TTTTGCTCTTATGTGGCAAAATGACTG
1 TTTTGCCCTTATGTGGCAAAATGACTG
48620261 TTTTGCCCTTAT
1 TTTTGCCCTTAT
48620273 ATGGTTAGCT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.42
Consensus pattern (27 bp):
TTTTGCCCTTATGTGGCAAAATGACTG
Found at i:48624872 original size:25 final size:25
Alignment explanation
Indices: 48624844--48624894 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
48624834 CCCTTATAAT
* *
48624844 GTGAAAATGACCATTTTTCCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
*
48624869 GTGAAAATGACCGTTATACCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
48624894 G
1 G
48624895 GATGTGCTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (25 bp):
GTGAAAATGACCATTATACCCCTAG
Found at i:48624949 original size:10 final size:10
Alignment explanation
Indices: 48624934--48624972 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
48624924 CTGATTTGTA
48624934 CATGATATGC
1 CATGATATGC
48624944 CATGATATGC
1 CATGATATGC
*
48624954 ACATGTTATGC
1 -CATGATATGC
48624965 CATGATAT
1 CATGATAT
48624973 ATTCATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
CATGATATGC
Found at i:48624949 original size:21 final size:21
Alignment explanation
Indices: 48624933--48624972 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
48624923 ACTGATTTGT
48624933 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
*
48624954 ACATGTTATGCCATGATAT
1 ACATGATATGCCATGATAT
48624973 ATTCATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:48637715 original size:30 final size:30
Alignment explanation
Indices: 48637679--48637741 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
48637669 ACTTAACAAG
*
48637679 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAAAAAAATTAA
*
48637709 CAAATGTCTTTAAAATAATAAAAAAATTAA
1 CAAATGTCTCTAAAATAATAAAAAAATTAA
48637739 CAA
1 CAA
48637742 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.59, C:0.11, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAAAAAAATTAA
Found at i:48641884 original size:27 final size:26
Alignment explanation
Indices: 48641854--48642028 Score: 163
Period size: 27 Copynumber: 6.5 Consensus size: 26
48641844 AAATTGTACA
*
48641854 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTG
* *
48641881 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCG-ATTGACTATG-TG
* * *
48641908 GCACTAAGCGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTG
48641935 GCACTAAGTGTGCGAGTCTGACTATGTG
1 GCACTAAGTGTGCGA-T-TGACTATGTG
* *
48641963 GCACTAAGTGTGCGATTTGATTCTGTG
1 GCACTAAGTGTGCGA-TTGACTATGTG
* * *
48641990 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTG
*
48642017 GCACTGAGTGTG
1 GCACTAAGTGTG
48642029 TGGGCTCAAT
Statistics
Matches: 125, Mismatches: 18, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
26 1 0.01
27 97 0.78
28 27 0.22
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTG
Found at i:48650078 original size:46 final size:45
Alignment explanation
Indices: 48650026--48650184 Score: 162
Period size: 46 Copynumber: 3.4 Consensus size: 45
48650016 TGGGCATCCA
48650026 AACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACT-ATGGATGTGAACGTCCG
* *
48650072 AACTCGTTGAGTTTAGTCCGAGTTCA-TA-AGATGT-AACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGTGAAC---G--TCCG
* * * *
48650119 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCT
1 AACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGTGAACGTCCG
* *
48650165 AGCTCATTGAGTTGAGTCCG
1 AACTCGTTGAGTTGAGTCCG
48650185 GGTTTGCTTA
Statistics
Matches: 95, Mismatches: 9, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
45 2 0.02
46 46 0.48
47 28 0.29
48 1 0.01
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGTGAACGTCCG
Found at i:48655505 original size:39 final size:39
Alignment explanation
Indices: 48655229--48655504 Score: 417
Period size: 39 Copynumber: 7.1 Consensus size: 39
48655219 ATGCAAGGCA
48655229 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
48655268 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGTTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
48655307 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
48655346 CTGGAAATATATCCGGGCCAATGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
48655385 CTGGAAATGTATCCGGGCTAAAGTCCTGCAGGCTTCGGG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
48655424 CTTGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * * *
48655463 CTGAAAATGTATCCAGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
48655502 CTG
1 CTG
48655505 ATAATATAAT
Statistics
Matches: 211, Mismatches: 26, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 211 1.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:48658900 original size:66 final size:66
Alignment explanation
Indices: 48658759--48658893 Score: 243
Period size: 66 Copynumber: 2.0 Consensus size: 66
48658749 ATAATGCTTA
48658759 TGAGATGAATGTTAAGATAGCATTGTATGAGAGAGGTATGGTTGCAATTACTGAACTTTGTTGTA
1 TGAGATGAATGTTAAGATAGCATTGTATGAGAGAGGTATGGTTGCAATTACTGAACTTTGTTGTA
48658824 T
66 T
* * *
48658825 TGAGATGAATGTTAAGATAGCATTGTATGAGTGTGGTATGGTTGCAATTAGTGAACTTTGTTGTA
1 TGAGATGAATGTTAAGATAGCATTGTATGAGAGAGGTATGGTTGCAATTACTGAACTTTGTTGTA
48658890 T
66 T
48658891 TGA
1 TGA
48658894 ATTGAATTTT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.29, C:0.05, G:0.28, T:0.38
Consensus pattern (66 bp):
TGAGATGAATGTTAAGATAGCATTGTATGAGAGAGGTATGGTTGCAATTACTGAACTTTGTTGTA
T
Found at i:48659059 original size:75 final size:75
Alignment explanation
Indices: 48658936--48659074 Score: 215
Period size: 75 Copynumber: 1.9 Consensus size: 75
48658926 ATGTGATTGG
* * *
48658936 AAAGACTGAAGGGAAATGAAAGTAATTCATGACCGTCTAAAAATAGTTTCAGATTTGCAGAAAAA
1 AAAGACTGAAGGGAAATAAAAGTAATTCATGACCGTCTAAAAACAGTTTCAGATTGGCAGAAAAA
48659001 TAGTTTCAGA
66 TAGTTTCAGA
* * * *
48659011 AAAGAGTGAGGGGAAATAAAAGTAATTCGTGACCGTCTAAAAGCAGTTTCAGATTGGCAGAAAA
1 AAAGACTGAAGGGAAATAAAAGTAATTCATGACCGTCTAAAAACAGTTTCAGATTGGCAGAAAA
48659075 TATATGTGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 57 1.00
ACGTcount: A:0.43, C:0.11, G:0.23, T:0.23
Consensus pattern (75 bp):
AAAGACTGAAGGGAAATAAAAGTAATTCATGACCGTCTAAAAACAGTTTCAGATTGGCAGAAAAA
TAGTTTCAGA
Found at i:48661302 original size:39 final size:39
Alignment explanation
Indices: 48661258--48661572 Score: 531
Period size: 39 Copynumber: 8.1 Consensus size: 39
48661248 ATGCAAGACA
*
48661258 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
48661297 CTGGAAATGTATCCGGGCTAAGGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
48661336 CTGGAAATATATCCAGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
48661375 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
48661414 CTGGAAATATATCCGGGCCAATGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
48661453 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
48661492 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
48661531 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
48661570 CTG
1 CTG
48661573 ATAATATAAT
Statistics
Matches: 257, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 257 1.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:48667360 original size:39 final size:39
Alignment explanation
Indices: 48667306--48667560 Score: 225
Period size: 40 Copynumber: 6.4 Consensus size: 39
48667296 AAACCAAGTA
* * *
48667306 CCTTCGGGATTTAGCCGGATATAGCT-GCTCGCTCAAATG
1 CCTTCGGGACTTAGCCGGATATAG-TAACTCGCACAAATG
*
48667345 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
*
48667385 CCTTCGGGACTTAGCCCGGA-ATTAGTCAC-CAGCACAAATG
1 CCTTCGGGACTTAG-CCGGATA-TAGTAACTC-GCACAAATG
* * *
48667425 CCTTTGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAG-CCGGATA-TAGTAACTCGCACAAATG
* * *
48667465 CCTTCGGGACTTAGCATGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGC-CGGATA-TAGTAACTCGCACAAATG
* * * *
48667505 CCTTCGAGATTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAG-CCGGATA-TAGTAACTCGCACAAATG
*
48667545 CCTTCGGTACTTAGCC
1 CCTTCGGGACTTAGCC
48667561 CGGTTACCAT
Statistics
Matches: 193, Mismatches: 16, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
39 18 0.09
40 174 0.90
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
Found at i:48667377 original size:40 final size:40
Alignment explanation
Indices: 48667339--48667563 Score: 344
Period size: 40 Copynumber: 5.6 Consensus size: 40
48667329 GCTGCTCGCT
* * *
48667339 CAAATGCCTTCGAGACTTAGCCCGG-ATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCA
*
48667379 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACCAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
*
48667419 CAAATGCCTTTGGGACTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
**
48667459 CAAATGCCTTCGGGACTTAGCATGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
* *
48667499 CAAATGCCTTCGAGATTTAGCCCGGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
*
48667539 CAAATGCCTTCGGTACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
48667564 TTACCATCCG
Statistics
Matches: 168, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 166 0.99
41 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCACTAGCA
Found at i:48673026 original size:40 final size:40
Alignment explanation
Indices: 48672936--48673159 Score: 283
Period size: 40 Copynumber: 5.6 Consensus size: 40
48672926 TGGATGATAA
* * * * **
48672936 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
48672976 CCGGGC-AAGTCTC-AAGGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAA-GGCATTTGTGCGAGTTACTAAAT
* *
48673015 CTGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
48673055 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
48673095 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
48673135 CCGGGCTATGTCCCGAAGACATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
48673160 AGTGAGTAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
38 2 0.01
39 28 0.17
40 128 0.79
41 4 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:48681177 original size:40 final size:40
Alignment explanation
Indices: 48681073--48681256 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
48681063 TGGATGATAA
* * * * **
48681073 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
48681113 CTGGGC-AAGTCCCGAAGGCCTTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
48681152 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
48681192 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
48681232 CCGGGCTATGTCCCGAAGACATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
48681257 AGCAAGTAGC
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
39 30 0.24
40 93 0.74
41 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:48686194 original size:40 final size:40
Alignment explanation
Indices: 48686124--48686421 Score: 401
Period size: 40 Copynumber: 7.5 Consensus size: 40
48686114 AAACCAAGTA
* *
48686124 CCTTCGGGATTTAG-CCGG-ATATAG-CTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAAT-TAGTC-ACTCGCACAAATG
* *
48686163 CCTTCGGGACCTAGCCCGG-ATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAT-TAGTCACTCGCACAAATG
*
48686203 CCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAT-TAGTCACTCGCACAAATG
*
48686243 CCTTCGGGACTTAGCCTGGAATTAGTCAC-CAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGTCACTC-GCACAAATG
*
48686283 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGTCACTCGCACAAATG
* * *
48686323 GCTTCGGGACTTAGCCCGGAATTAGTCACTAGTACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGTCACTCGCACAAATG
* *
48686363 CCTTCGGGATTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGTCACTCGCACAAATG
48686403 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
48686422 TTACCATCCG
Statistics
Matches: 239, Mismatches: 15, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
39 13 0.05
40 224 0.94
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAATTAGTCACTCGCACAAATG
Found at i:48693527 original size:96 final size:96
Alignment explanation
Indices: 48693396--48694526 Score: 1986
Period size: 96 Copynumber: 11.8 Consensus size: 96
48693386 GATAATTGTG
* * *
48693396 ATGTG-AA-TGTATATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
*
48693459 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCTGAATGGCCAATGTGATGA
48693490 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
48693555 ATGTGATAAGGCTGAATGGCCAATGTGATGA
66 ATGTGATAAGGCTGAATGGCCAATGTGATGA
48693586 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
48693651 ATGTGATAAGGCTGAATGGCCAATGTGATGA
66 ATGTGATAAGGCTGAATGGCCAATGTGATGA
48693682 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
48693747 ATGTGATAAGGCTGAATGGCCAATGTGATGA
66 ATGTGATAAGGCTGAATGGCCAATGTGATGA
48693778 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
48693843 ATGTGATAAGGCTGAATGGCCAATGTGATGA
66 ATGTGATAAGGCTGAATGGCCAATGTGATGA
48693874 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
48693939 ATGTGATAAGGCTGAATGGCCAATGTGATGA
66 ATGTGATAAGGCTGAATGGCCAATGTGATGA
48693970 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
48694035 ATGTGATAAGGCTGAATGGCCAATGTGATGA
66 ATGTGATAAGGCTGAATGGCCAATGTGATGA
48694066 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
48694131 ATGTGATAAGGCTGAATGGCCAATGTGATGA
66 ATGTGATAAGGCTGAATGGCCAATGTGATGA
48694162 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
48694227 ATGTGATAAGGCTGAATGGCCAATGTGATGA
66 ATGTGATAAGGCTGAATGGCCAATGTGATGA
* *
48694258 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTG--TAC
*
48694323 ATATGTGATAAGGCCT-AATGGCCGATGTGATGA
64 ATATGTGATAAGG-CTGAATGGCCAATGTGATGA
* *
48694356 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTG--TAC
*
48694421 ATATGTGATAAGGCCT-AATGGCCGATGTGATGA
64 ATATGTGATAAGG-CTGAATGGCCAATGTGATGA
* * * * * * * * * *
48694454 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
48694517 ATGTGATAAG
66 ATGTGATAAG
48694527 TCCCGAAGGG
Statistics
Matches: 1017, Mismatches: 15, Indels: 10
0.98 0.01 0.01
Matches are distributed among these distances:
94 19 0.02
95 2 0.00
96 854 0.84
98 140 0.14
99 2 0.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTACAT
ATGTGATAAGGCTGAATGGCCAATGTGATGA
Done.