Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 15 of 322
Found at i:4113077 original size:23 final size:23
Alignment explanation
Indices: 4113033--4113092 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
4113023 CTTTGAGCCC
*
4113033 TTTTATTTTACTATTATATTTATT
1 TTTTATTTTA-TTTTATATTTATT
4113057 TTTTATTTTATTTTA-ATTTTATT
1 TTTTATTTTATTTTATA-TTTATT
* *
4113080 TTGTCTTTTATTT
1 TTTTATTTTATTT
4113093 CTTTTTGAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 1 0.03
23 21 0.66
24 10 0.31
ACGTcount: A:0.20, C:0.03, G:0.02, T:0.75
Consensus pattern (23 bp):
TTTTATTTTATTTTATATTTATT
Found at i:4120185 original size:37 final size:38
Alignment explanation
Indices: 4120143--4120222 Score: 153
Period size: 37 Copynumber: 2.1 Consensus size: 38
4120133 TTATTCAATG
4120143 CTAATAAAAATTCATTAGAATTCATCATTAAATACTCT
1 CTAATAAAAATTCATTAGAATTCATCATTAAATACTCT
4120181 -TAATAAAAATTCATTAGAATTCATCATTAAATACTCT
1 CTAATAAAAATTCATTAGAATTCATCATTAAATACTCT
4120218 CTAAT
1 CTAAT
4120223 TTCCTTACAT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
37 37 0.90
38 4 0.10
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.38
Consensus pattern (38 bp):
CTAATAAAAATTCATTAGAATTCATCATTAAATACTCT
Found at i:4121653 original size:16 final size:17
Alignment explanation
Indices: 4121609--4121654 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
4121599 GAGGAACTTT
4121609 AAATAACTAAAATAAAC
1 AAATAACTAAAATAAAC
**
4121626 AAATAAGAAAAAT-AAC
1 AAATAACTAAAATAAAC
*
4121642 AAATGACTAAAAT
1 AAATAACTAAAAT
4121655 CAATAAACCA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
16 13 0.54
17 11 0.46
ACGTcount: A:0.70, C:0.09, G:0.04, T:0.17
Consensus pattern (17 bp):
AAATAACTAAAATAAAC
Found at i:4127244 original size:27 final size:27
Alignment explanation
Indices: 4127208--4127262 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
4127198 TACCTAAAGA
4127208 GATGAGATTCTTCCTCAAACCAAGCAT
1 GATGAGATTCTTCCTCAAACCAAGCAT
* * *
4127235 GATGAGATTCTTCTTCAAATCAGGCAT
1 GATGAGATTCTTCCTCAAACCAAGCAT
4127262 G
1 G
4127263 TGTCTAACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (27 bp):
GATGAGATTCTTCCTCAAACCAAGCAT
Found at i:4143564 original size:18 final size:18
Alignment explanation
Indices: 4143543--4143616 Score: 85
Period size: 18 Copynumber: 4.1 Consensus size: 18
4143533 CCAACTACTG
* *
4143543 TATACGTGAACAGTACTA
1 TATACGTGAATAGTACCA
* *
4143561 TATACGTAAATAGTACCG
1 TATACGTGAATAGTACCA
* *
4143579 TATACATGAATAGTTCCA
1 TATACGTGAATAGTACCA
*
4143597 TATACGTGAATAGTGCCA
1 TATACGTGAATAGTACCA
4143615 TA
1 TA
4143617 AATGGTCGTA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (18 bp):
TATACGTGAATAGTACCA
Found at i:4148000 original size:153 final size:153
Alignment explanation
Indices: 4147707--4148008 Score: 394
Period size: 153 Copynumber: 2.0 Consensus size: 153
4147697 ACTAAGGGAC
* * * *
4147707 TGCAATCTTGGTGAAGGAGATATCCATAGTGCTATTTCTTGTCTATCCTCTTTGACAAACCTTGA
1 TGCAATATTGGTGAAGGAGATATCCATAGTGATATTTCTGGTCTATCCTCATTGACAAACCTTGA
* * **
4147772 TCTTAGCGGTAACAATTTCAACAGCATACCAGCGTCTCTTACTCGACTCTCCAAGCTTGAATTTC
66 TCTTAGCGGTAACAATTTCAACAGCATACCAGCGTCTCTTACTCGACTCTCCAAGCCTCAAAATC
*
4147837 TTATATTGTCAAATTGCAGCCTG
131 TTATAGTGTCAAATTGCAGCCTG
* **
4147860 TGCAATATTGGTGAAGGAGATATTCC-TAGTGATATTTCTGGTCTATCCTCATTGAGAATTCTTG
1 TGCAATATTGGTGAAGGAGATA-TCCATAGTGATATTTCTGGTCTATCCTCATTGACAAACCTTG
* * * * * *
4147924 ATCTTAGTGGTAACAATTTCACCAGCATAGCTGCGTCTCTTACTCGTCTTTCC-AGTCCTCAAAA
65 ATCTTAGCGGTAACAATTTCAACAGCATACCAGCGTCTCTTACTCGACTCTCCAAG-CCTCAAAA
4147988 TCTTGA-AGTGTCAAATTGCAG
129 TCTT-ATAGTGTCAAATTGCAG
4148009 TGAGCTTGAA
Statistics
Matches: 128, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
152 2 0.02
153 122 0.95
154 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (153 bp):
TGCAATATTGGTGAAGGAGATATCCATAGTGATATTTCTGGTCTATCCTCATTGACAAACCTTGA
TCTTAGCGGTAACAATTTCAACAGCATACCAGCGTCTCTTACTCGACTCTCCAAGCCTCAAAATC
TTATAGTGTCAAATTGCAGCCTG
Found at i:4149872 original size:22 final size:22
Alignment explanation
Indices: 4149847--4149891 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
4149837 AACTACTTCT
4149847 TGTTTAGAATAAATTAGAGTTC
1 TGTTTAGAATAAATTAGAGTTC
4149869 TGTTTAGAATAAATTAGAGTTC
1 TGTTTAGAATAAATTAGAGTTC
4149891 T
1 T
4149892 AGTATACTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.04, G:0.18, T:0.42
Consensus pattern (22 bp):
TGTTTAGAATAAATTAGAGTTC
Found at i:4164058 original size:15 final size:17
Alignment explanation
Indices: 4164038--4164074 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
4164028 TATAGTGAAA
4164038 AAAATTGGAA-GGAT-G
1 AAAATTGGAAGGGATAG
*
4164053 AAAATTTGAAGGGATAG
1 AAAATTGGAAGGGATAG
4164070 AAAAT
1 AAAAT
4164075 ATATTTTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 9 0.47
16 4 0.21
17 6 0.32
ACGTcount: A:0.51, C:0.00, G:0.27, T:0.22
Consensus pattern (17 bp):
AAAATTGGAAGGGATAG
Found at i:4177256 original size:9 final size:9
Alignment explanation
Indices: 4177234--4177334 Score: 53
Period size: 9 Copynumber: 10.7 Consensus size: 9
4177224 ATTTGCTATT
*
4177234 TTATTTTCA
1 TTATTTTTA
*
4177243 ATATTTTT-
1 TTATTTTTA
4177251 TGTATTTTTA
1 T-TATTTTTA
4177261 TTATTTTTA
1 TTATTTTTA
4177270 TTATTATTT-
1 TTATT-TTTA
* *
4177279 TCTATTATTG
1 T-TATTTTTA
*
4177289 TTATTATTA
1 TTATTTTTA
*
4177298 GTATATTATTA
1 -T-TATTTTTA
*
4177309 TTATTCTTAA
1 TTATT-TTTA
*
4177319 TGTATTATTA
1 T-TATTTTTA
4177329 TTATTT
1 TTATTT
4177335 ATTTTCCACT
Statistics
Matches: 73, Mismatches: 10, Indels: 18
0.72 0.10 0.18
Matches are distributed among these distances:
9 44 0.60
10 17 0.23
11 12 0.16
ACGTcount: A:0.26, C:0.03, G:0.04, T:0.67
Consensus pattern (9 bp):
TTATTTTTA
Found at i:4177273 original size:3 final size:3
Alignment explanation
Indices: 4177253--4177514 Score: 98
Period size: 3 Copynumber: 87.0 Consensus size: 3
4177243 ATATTTTTTG
* * * * *
4177253 TAT TTT TAT TAT TTT TAT TAT TAT TTT CTAT TAT TGT TAT TAT TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
* *
4177299 TA- TAT TAT TAT TAT TCT TAAT GTAT TAT TAT TATT TAT T-T TCCAC
1 TAT TAT TAT TAT TAT TAT T-AT -TAT TAT TAT TA-T TAT TAT T--AT
* * * * * *
4177344 T-T TAT TAT TGT TAT T-G TAT TAT CAC TAT TAT TAT CAT CA- TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * ** **
4177389 TA- AACT AAT TAA T-T TA- TAT TA- CAT TAT ATAT T-T CCT T-T TCG
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
4177430 TATT TACT TACGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TA-T TA-T TA--T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * **
4177479 T-T TCGT TGT TGG TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
4177515 CGTTTTCATC
Statistics
Matches: 197, Mismatches: 39, Indels: 46
0.70 0.14 0.16
Matches are distributed among these distances:
2 17 0.09
3 155 0.79
4 20 0.10
5 5 0.03
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:4177287 original size:22 final size:21
Alignment explanation
Indices: 4177253--4177333 Score: 72
Period size: 23 Copynumber: 3.6 Consensus size: 21
4177243 ATATTTTTTG
*
4177253 TATTTTTATTATTTTTATTAT
1 TATTTTTATTATTGTTATTAT
4177274 TATTTTCTATTATTGTTATTAT
1 TATTTT-TATTATTGTTATTAT
* * *
4177296 TAGTATATTATTATTATTCTTAAT
1 TA-T-TTTTATTATTGTTATT-AT
*
4177320 GTATTATTATTATT
1 -TATTTTTATTATT
4177334 TATTTTCCAC
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
21 6 0.12
22 16 0.31
23 22 0.43
24 5 0.10
25 2 0.04
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (21 bp):
TATTTTTATTATTGTTATTAT
Found at i:4177306 original size:20 final size:20
Alignment explanation
Indices: 4177262--4177333 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
4177252 GTATTTTTAT
* * *
4177262 TATTTTTATTATTATT-TTC
1 TATTATTATTATTATTAATA
* *
4177281 TATTATTGTTATTATTAGTA
1 TATTATTATTATTATTAATA
* *
4177301 TATTATTATTATTCTTAATG
1 TATTATTATTATTATTAATA
4177321 TATTATTATTATT
1 TATTATTATTATT
4177334 TATTTTCCAC
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
19 14 0.32
20 30 0.68
ACGTcount: A:0.28, C:0.03, G:0.04, T:0.65
Consensus pattern (20 bp):
TATTATTATTATTATTAATA
Found at i:4177309 original size:17 final size:17
Alignment explanation
Indices: 4177284--4177331 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
4177274 TATTTTCTAT
*
4177284 TATTGTTATTATTAGTA
1 TATTATTATTATTAGTA
**
4177301 TATTATTATTATTCTTA
1 TATTATTATTATTAGTA
4177318 -ATGTATTATTATTA
1 TAT-TATTATTATTA
4177332 TTTATTTTCC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
16 2 0.08
17 24 0.92
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.60
Consensus pattern (17 bp):
TATTATTATTATTAGTA
Found at i:4179858 original size:2 final size:2
Alignment explanation
Indices: 4179853--4179883 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
4179843 TTGTTTTAGT
4179853 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
4179884 TTTAACTCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:4184300 original size:12 final size:12
Alignment explanation
Indices: 4184283--4184308 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
4184273 TGAATGCGAT
4184283 GAGATGTCTTTC
1 GAGATGTCTTTC
4184295 GAGATGTCTTTC
1 GAGATGTCTTTC
4184307 GA
1 GA
4184309 AGGCACACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.15, G:0.27, T:0.38
Consensus pattern (12 bp):
GAGATGTCTTTC
Found at i:4187619 original size:15 final size:15
Alignment explanation
Indices: 4187586--4187620 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
4187576 AAATATAATT
*
4187586 TTTAAATTTAAAAAA
1 TTTAAATATAAAAAA
4187601 -TTAAATATAAAAAA
1 TTTAAATATAAAAAA
4187615 TTTAAA
1 TTTAAA
4187621 GATTATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TTTAAATATAAAAAA
Found at i:4196191 original size:12 final size:12
Alignment explanation
Indices: 4196174--4196203 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
4196164 TTGAGCTCAA
*
4196174 ATCTGTATTTGT
1 ATCTGTATTTGC
4196186 ATCTGTATTTGC
1 ATCTGTATTTGC
4196198 ATCTGT
1 ATCTGT
4196204 TTTCGACTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.13, G:0.17, T:0.53
Consensus pattern (12 bp):
ATCTGTATTTGC
Found at i:4198586 original size:18 final size:17
Alignment explanation
Indices: 4198553--4198591 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
4198543 TTGTATAAAT
4198553 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
4198571 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
4198588 TGTG
1 TGTG
4198592 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:4198686 original size:75 final size:75
Alignment explanation
Indices: 4198596--4198743 Score: 296
Period size: 75 Copynumber: 2.0 Consensus size: 75
4198586 AATGTGGAAG
4198596 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
1 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
4198661 GGTTGAACAT
66 GGTTGAACAT
4198671 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
1 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
4198736 GGTTGAAC
66 GGTTGAAC
4198744 TTAGGAATAG
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.33
Consensus pattern (75 bp):
GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
GGTTGAACAT
Found at i:4198919 original size:23 final size:23
Alignment explanation
Indices: 4198892--4198989 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
4198882 AGTGTTATTG
4198892 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
4198915 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
4198938 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
4198960 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
4198983 ATCAGTG
1 ATCAGTG
4198990 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:4198958 original size:45 final size:45
Alignment explanation
Indices: 4198894--4198982 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
4198884 TGTTATTGAT
* *
4198894 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
4198939 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
4198983 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:4214365 original size:14 final size:12
Alignment explanation
Indices: 4214330--4214360 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
4214320 GTGTGTGCGG
*
4214330 CCGTGTGCTAGA
1 CCGTGTGATAGA
4214342 CCGTGTGATAGA
1 CCGTGTGATAGA
4214354 CCGTGTG
1 CCGTGTG
4214361 TGATATTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.23, G:0.35, T:0.26
Consensus pattern (12 bp):
CCGTGTGATAGA
Found at i:4214415 original size:29 final size:29
Alignment explanation
Indices: 4214373--4214441 Score: 129
Period size: 29 Copynumber: 2.4 Consensus size: 29
4214363 ATATTAAGAT
*
4214373 GACCACACGGGCGTTTGCTTGGCCGTGTG
1 GACCACACGGGCGTGTGCTTGGCCGTGTG
4214402 GACCACACGGGCGTGTGCTTGGCCGTGTG
1 GACCACACGGGCGTGTGCTTGGCCGTGTG
4214431 GACCACACGGG
1 GACCACACGGG
4214442 TCAGCCACCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.13, C:0.29, G:0.39, T:0.19
Consensus pattern (29 bp):
GACCACACGGGCGTGTGCTTGGCCGTGTG
Found at i:4219211 original size:17 final size:16
Alignment explanation
Indices: 4219183--4219234 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
4219173 CTTCATATAT
*
4219183 TTTCACTTCTTTTTCC
1 TTTCATTTCTTTTTCC
*
4219199 TTTCATATTCTTTTTCA
1 TTTCAT-TTCTTTTTCC
*
4219216 TTTCATTTCTCTTTCC
1 TTTCATTTCTTTTTCC
4219232 TTT
1 TTT
4219235 GTTTTCCCCC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
16 16 0.52
17 15 0.48
ACGTcount: A:0.10, C:0.25, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTCATTTCTTTTTCC
Found at i:4222530 original size:29 final size:30
Alignment explanation
Indices: 4222491--4222548 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
4222481 AACCTTTCCC
*
4222491 CTTAGCTTTTATGGCTAAACTAGAACCCTT
1 CTTAGCTTTTATGGCTAAACTAAAACCCTT
*
4222521 CTTAG-TTTTATGGCTTAACTAAAACCCT
1 CTTAGCTTTTATGGCTAAACTAAAACCCT
4222549 CCTAATTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.28, C:0.22, G:0.12, T:0.38
Consensus pattern (30 bp):
CTTAGCTTTTATGGCTAAACTAAAACCCTT
Found at i:4237275 original size:155 final size:155
Alignment explanation
Indices: 4236993--4237305 Score: 484
Period size: 155 Copynumber: 2.0 Consensus size: 155
4236983 AGAAACAGAC
*
4236993 GCATGATGTCACAACGAGCAAGAGGCAACATCGTGACGAGGGTCATCGGGACAAGCAAAGATCTC
1 GCATGATGTCACAACGAGCAAGAGGCAACATCGTGACAAGGGTCATCGGGACAAGCAAAGATCTC
*
4237058 TTGAGGTAGGAGCAGGGGCAACGTCACGAAGAGGAGAGTCATGACGTCACAACGATATCTCACCT
66 TTGAGGTAGGAGCAGGGGCAACGTCACGAAGAGGAGAGTCATGACGTCACAACGATACCTCACCT
*
4237123 AATGTAGCTGCGTTTTATACTCCAA
131 AATGTAGCTGCGTTTTAGACTCCAA
* * *
4237148 GCATGATGTCA-AGACGAGCAAGCGGCAACGTCGTGACAAGGGTCATCGGGACGAGCAAAGATCT
1 GCATGATGTCACA-ACGAGCAAGAGGCAACATCGTGACAAGGGTCATCGGGACAAGCAAAGATCT
* * * * * * *
4237212 CTTGAGGTAGGAGTAGGGGCGATGTCACGAAGATGAGAGTCATGATGTCGCGACGATACCTCACC
65 CTTGAGGTAGGAGCAGGGGCAACGTCACGAAGAGGAGAGTCATGACGTCACAACGATACCTCACC
*
4237277 TAATGTAGTTGCGTTTTAGACTCCAA
130 TAATGTAGCTGCGTTTTAGACTCCAA
4237303 GCA
1 GCA
4237306 GGACTTCTTC
Statistics
Matches: 143, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
154 1 0.01
155 142 0.99
ACGTcount: A:0.30, C:0.21, G:0.29, T:0.19
Consensus pattern (155 bp):
GCATGATGTCACAACGAGCAAGAGGCAACATCGTGACAAGGGTCATCGGGACAAGCAAAGATCTC
TTGAGGTAGGAGCAGGGGCAACGTCACGAAGAGGAGAGTCATGACGTCACAACGATACCTCACCT
AATGTAGCTGCGTTTTAGACTCCAA
Found at i:4240914 original size:11 final size:11
Alignment explanation
Indices: 4240898--4240934 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
4240888 GATGTCCATC
4240898 CAGAGAATTTG
1 CAGAGAATTTG
*
4240909 CAGAGAATTTAC
1 CAGAGAATTT-G
4240921 CAGAGAATTTG
1 CAGAGAATTTG
4240932 CAG
1 CAG
4240935 CAAGCGAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (11 bp):
CAGAGAATTTG
Found at i:4242379 original size:29 final size:29
Alignment explanation
Indices: 4242337--4242394 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
4242327 TTCCGCAATC
* *
4242337 ATGGTGTTCGGTAATCGTTTTTTCACAAA
1 ATGGTGCTCGGTAATCGTATTTTCACAAA
4242366 ATGGTGCTCGGTAATCGTATTTTCACAAA
1 ATGGTGCTCGGTAATCGTATTTTCACAAA
4242395 CTTATGCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.38
Consensus pattern (29 bp):
ATGGTGCTCGGTAATCGTATTTTCACAAA
Found at i:4244119 original size:276 final size:276
Alignment explanation
Indices: 4243626--4244174 Score: 1019
Period size: 276 Copynumber: 2.0 Consensus size: 276
4243616 TTTTGTGCGG
4243626 TAGAAATGCGACTCAATGGAGAAGTGCGATTGAAAGACTTAAAAGAGACTCTAATAAAGAAATTC
1 TAGAAATGCGACTCAATGGAGAAGTGCGATTGAAAGACTTAAAAGAGACTCTAATAAAGAAATTC
4243691 TCGATAAACTTCGAATCAGTTTTGATGGACTGGAAGAAAGGGAGAAGAATATATTTTTAGATATA
66 TCGATAAACTTCGAATCAGTTTTGATGGACTGGAAGAAAGGGAGAAGAATATATTTTTAGATATA
* *
4243756 GCATGCTTCTTCAATGGGGAGAAGAAAGATTTTGTAATCAAAGTATTGGATGGTTGTGAGTTTTT
131 GCATGCTTCTTCAATGGGGAGAAGAAAGATTTTGTAATCAAAGTATTGAATGGTTGTGAATTTTT
*
4243821 TCCTGATATCGGAATTGATGTTCTCGTTAAAAAATCTC-TCGTAAAAGTCGATAAACACAACAAA
196 TCCTGATATCGGAATTGATGTTCTCATTAAAAAATCTCTTC-TAAAAGTCGATAAACACAACAAA
4243885 AATTTGAAGATGCATGA
260 AATTTGAAGATGCATGA
4243902 TAGAAATGCGACTCAATGGAGAAGTGCGATTGAAAGACTTAAAAGAGACTCTAATAAAGAAATTC
1 TAGAAATGCGACTCAATGGAGAAGTGCGATTGAAAGACTTAAAAGAGACTCTAATAAAGAAATTC
4243967 TCGATAAACTTCGAATCAGTTTTGATGGACTGGAAGAAAGGGAGAAGAATATATTTTTAGATATA
66 TCGATAAACTTCGAATCAGTTTTGATGGACTGGAAGAAAGGGAGAAGAATATATTTTTAGATATA
4244032 GCATGCTTCTTCAATGGGGAGAAGAAAGATTTTGTAATCAAAGTATTGAATGGTTGTGAATTTTT
131 GCATGCTTCTTCAATGGGGAGAAGAAAGATTTTGTAATCAAAGTATTGAATGGTTGTGAATTTTT
* * * *
4244097 TTCTGATATTGGAATTGATGTTCTCATTAAAAAATCTCTTCTAAAAGTCGATGAACACAACAAAT
196 TCCTGATATCGGAATTGATGTTCTCATTAAAAAATCTCTTCTAAAAGTCGATAAACACAACAAAA
4244162 ATTTGAAGATGCA
261 ATTTGAAGATGCA
4244175 CGACTTGTTG
Statistics
Matches: 265, Mismatches: 7, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
276 263 0.99
277 2 0.01
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.30
Consensus pattern (276 bp):
TAGAAATGCGACTCAATGGAGAAGTGCGATTGAAAGACTTAAAAGAGACTCTAATAAAGAAATTC
TCGATAAACTTCGAATCAGTTTTGATGGACTGGAAGAAAGGGAGAAGAATATATTTTTAGATATA
GCATGCTTCTTCAATGGGGAGAAGAAAGATTTTGTAATCAAAGTATTGAATGGTTGTGAATTTTT
TCCTGATATCGGAATTGATGTTCTCATTAAAAAATCTCTTCTAAAAGTCGATAAACACAACAAAA
ATTTGAAGATGCATGA
Found at i:4244656 original size:27 final size:24
Alignment explanation
Indices: 4244605--4244652 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
4244595 AATGTATGTA
*
4244605 TTTTTGAAATATTAATGGTATATT
1 TTTTTGAAAAATTAATGGTATATT
4244629 TTTTTGAGAAAATTAATGGTATAT
1 TTTTTGA-AAAATTAATGGTATAT
4244653 ATTTAATGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (24 bp):
TTTTTGAAAAATTAATGGTATATT
Found at i:4246490 original size:153 final size:153
Alignment explanation
Indices: 4246105--4246473 Score: 582
Period size: 153 Copynumber: 2.4 Consensus size: 153
4246095 ATATTCCACC
** * * *
4246105 TGATATTTCTGGTCTATCCTCTTTG-GAAATACTTGATCTTAGTGGTAACAAATTCGTCAGCATA
1 TGATATTTCTGGTCTATCCTCTTTGAGTTAT-CTTAATCTTAGTGGTAACAATTTCATCAGCATA
* * *
4246169 CCTGCATCTCTTACTCGACTCTCGAAGCTTGCATATCTTATATTGTCAAATTGCAACTTGTGCAC
65 CCTGCATCTCTTACTCGACTCTCAAAGCTTGAATATCTTATATTGTCAAATTGCAACATGTGCAC
*
4246234 TTTTGGTGAAGCAGATACTCATAG
130 TCTTGGTGAAGCAGATACTCATAG
4246258 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
1 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
*
4246323 CTGCATCTCTTACTCGACTCTCAAAGCTT-AAGTCTCTTGA-ATTGTCAAATTGCAACATGTGCA
66 CTGCATCTCTTACTCGACTCTCAAAGCTTGAA-TATCTT-ATATTGTCAAATTGCAACATGTGCA
4246386 CTCTTGGTGAAGCAGATACTCATAG
129 CTCTTGGTGAAGCAGATACTCATAG
* *
4246411 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTTATCTTAGTGGTAACAATTTCATTAGCAT
1 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCAT
4246474 TCCTTTGGCT
Statistics
Matches: 201, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
152 1 0.00
153 196 0.98
154 4 0.02
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.38
Consensus pattern (153 bp):
TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
CTGCATCTCTTACTCGACTCTCAAAGCTTGAATATCTTATATTGTCAAATTGCAACATGTGCACT
CTTGGTGAAGCAGATACTCATAG
Found at i:4250460 original size:41 final size:41
Alignment explanation
Indices: 4250403--4250601 Score: 287
Period size: 41 Copynumber: 4.9 Consensus size: 41
4250393 GACTTTTCGG
4250403 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
4250444 GGGCTTTAGCGGCGTTTTTATGTAAGCG-CGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
* * * *
4250484 GGGATTTAGCAGCGTTTTTATTTAAGCGCCGTTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
* *
4250525 GGGATTTAGTGGCGTTTTTA-GTAAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGT-AAGCGCCGCTAATGTTCT
* *
4250566 GGGCTTTAGCGGCGTTTTTGT-TGATGCGCCGCTAAT
1 GGGCTTTAGCGGCGTTTTTATGT-AAGCGCCGCTAAT
4250602 TCGCAGGCCT
Statistics
Matches: 142, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
40 38 0.27
41 104 0.73
ACGTcount: A:0.16, C:0.17, G:0.29, T:0.38
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
Found at i:4250542 original size:81 final size:82
Alignment explanation
Indices: 4250407--4250601 Score: 279
Period size: 81 Copynumber: 2.4 Consensus size: 82
4250397 TTTCGGGGGC
*
4250407 TTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGT-AAGC
1 TTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCTGGGATTTAGCGGCGTTTTTA-GTAAAGC
4250471 G-CGCTAATGTTCTGGGA
65 GCCGCTAATGTTCTGGGA
* * * *
4250488 TTTAGCAGCGTTTTTATTTAAGCGCCGTTAATGTTCTGGGATTTAGTGGCGTTTTTAGTAAAGCG
1 TTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCTGGGATTTAGCGGCGTTTTTAGTAAAGCG
*
4250553 CCGCTAATGTTCTGGGC
66 CCGCTAATGTTCTGGGA
* *
4250570 TTTAGCGGCGTTTTTGT-TGATGCGCCGCTAAT
1 TTTAGCGGCGTTTTTATGT-AAGCGCCGCTAAT
4250602 TCGCAGGCCT
Statistics
Matches: 101, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
80 2 0.02
81 58 0.57
82 41 0.41
ACGTcount: A:0.16, C:0.17, G:0.28, T:0.38
Consensus pattern (82 bp):
TTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCTGGGATTTAGCGGCGTTTTTAGTAAAGCG
CCGCTAATGTTCTGGGA
Found at i:4250673 original size:122 final size:122
Alignment explanation
Indices: 4250407--4250678 Score: 284
Period size: 122 Copynumber: 2.2 Consensus size: 122
4250397 TTTCGGGGGC
* * * *
4250407 TTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGTAAGCG
1 TTTAGTGGCATTTTTAGGAAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGTAAGCG
* * * ** * * * *
4250472 CGCTAATGTTCTGGGATTTAGCAGCGTTTTTATTTAAGCGCCGTTAATGTTCTGGGA
66 CGCTAATGTGCAGGCATTTAGCAGCGTTTTTATAAAAACGCCGCTAATGCTCTGCGA
* * * *
4250529 TTTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTGT-TGATGC
1 TTTAGTGGCATTTTTAGGAAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGT-AAGC
* * *
4250593 GCCGCTAAT-TCGCAGGCCTTTAGCGGCGCTTTTT-TAAAAAACGCCGCTAATGCTCT-CTA
65 G-CGCTAATGT-GCAGGCATTTAGCAGCG-TTTTTAT-AAAAACGCCGCTAATGCTCTGCGA
4250652 TTTAGTGGCATTTTT-GGAAAGCGCCGC
1 TTTAGTGGCATTTTTAGGAAAGCGCCGC
4250679 AAAAAAATTA
Statistics
Matches: 125, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
121 1 0.01
122 69 0.55
123 35 0.28
124 20 0.16
ACGTcount: A:0.18, C:0.19, G:0.27, T:0.36
Consensus pattern (122 bp):
TTTAGTGGCATTTTTAGGAAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGTAAGCG
CGCTAATGTGCAGGCATTTAGCAGCGTTTTTATAAAAACGCCGCTAATGCTCTGCGA
Found at i:4251065 original size:23 final size:23
Alignment explanation
Indices: 4251039--4251119 Score: 71
Period size: 23 Copynumber: 3.5 Consensus size: 23
4251029 ATAGTATGTA
4251039 GTTTAAGGGTTTTATAGTTTAAG
1 GTTTAAGGGTTTTATAGTTTAAG
*
4251062 GTTTAA-TGTTTACTATAGTATGT-A-
1 GTTTAAGGGTTT--TATAGT-T-TAAG
* *
4251086 GTTTAAGGGTTTCATAGTTTATG
1 GTTTAAGGGTTTTATAGTTTAAG
4251109 GTTT-AGGGTTT
1 GTTTAAGGGTTT
4251120 GTTATATTGG
Statistics
Matches: 47, Mismatches: 4, Indels: 15
0.71 0.06 0.23
Matches are distributed among these distances:
21 1 0.02
22 12 0.26
23 15 0.32
24 12 0.26
25 6 0.13
26 1 0.02
ACGTcount: A:0.23, C:0.02, G:0.25, T:0.49
Consensus pattern (23 bp):
GTTTAAGGGTTTTATAGTTTAAG
Found at i:4251155 original size:22 final size:21
Alignment explanation
Indices: 4251130--4251170 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
4251120 GTTATATTGG
4251130 GTTTGTGA-TTTAGTGTTTTAAA
1 GTTTG-GAGTTTAGT-TTTTAAA
4251152 GTTTGGAGTTTAGTTTTTA
1 GTTTGGAGTTTAGTTTTTA
4251171 TAGTCAGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.20, C:0.00, G:0.24, T:0.56
Consensus pattern (21 bp):
GTTTGGAGTTTAGTTTTTAAA
Found at i:4253837 original size:12 final size:12
Alignment explanation
Indices: 4253820--4253856 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
4253810 AACTAGAGGC
4253820 ATTCGTATGTCT
1 ATTCGTATGTCT
4253832 ATTCGTATGTCT
1 ATTCGTATGTCT
4253844 ATTCGTATGTCT
1 ATTCGTATGTCT
4253856 A
1 A
4253857 AGTATATCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.49
Consensus pattern (12 bp):
ATTCGTATGTCT
Found at i:4255063 original size:29 final size:29
Alignment explanation
Indices: 4255021--4255078 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
4255011 TAAATCTTCT
4255021 TCCATTTGTCAACTATTTCATTTCCAAAA
1 TCCATTTGTCAACTATTTCATTTCCAAAA
4255050 TCCATTTGTCAACTATTTCATTTCCAAAA
1 TCCATTTGTCAACTATTTCATTTCCAAAA
4255079 ATATATTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (29 bp):
TCCATTTGTCAACTATTTCATTTCCAAAA
Found at i:4255239 original size:9 final size:9
Alignment explanation
Indices: 4255208--4255264 Score: 57
Period size: 9 Copynumber: 6.7 Consensus size: 9
4255198 TTAAAGTTCA
4255208 AATTT-CAT
1 AATTTACAT
* *
4255216 AACTTACGT
1 AATTTACAT
*
4255225 ATTTTACAT
1 AATTTACAT
4255234 AATTTACAT
1 AATTTACAT
4255243 AA-TT-CAT
1 AATTTACAT
*
4255250 AATTTACAA
1 AATTTACAT
4255259 AATTTA
1 AATTTA
4255265 AATATATAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
7 5 0.13
8 8 0.21
9 26 0.67
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (9 bp):
AATTTACAT
Found at i:4255252 original size:16 final size:16
Alignment explanation
Indices: 4255231--4255262 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
4255221 ACGTATTTTA
*
4255231 CATAATTTACATAATT
1 CATAATTTACAAAATT
4255247 CATAATTTACAAAATT
1 CATAATTTACAAAATT
4255263 TAAATATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (16 bp):
CATAATTTACAAAATT
Found at i:4255389 original size:12 final size:12
Alignment explanation
Indices: 4255357--4255426 Score: 72
Period size: 12 Copynumber: 6.0 Consensus size: 12
4255347 CATAATATCC
*
4255357 TAACTTACATAG
1 TAACTTACATAA
* *
4255369 TATCGTACATAA
1 TAACTTACATAA
4255381 TAACTTACA-AA
1 TAACTTACATAA
4255392 -AACTTACATAA
1 TAACTTACATAA
*
4255403 TAACCTACATAA
1 TAACTTACATAA
* *
4255415 TACCTTATATAA
1 TAACTTACATAA
4255427 CAATACATAA
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
10 8 0.17
11 4 0.09
12 35 0.74
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.31
Consensus pattern (12 bp):
TAACTTACATAA
Found at i:4255494 original size:9 final size:9
Alignment explanation
Indices: 4255480--4256025 Score: 528
Period size: 9 Copynumber: 60.0 Consensus size: 9
4255470 CACAAAAACA
4255480 ATAACTTAC
1 ATAACTTAC
4255489 ATAACTTAC
1 ATAACTTAC
*
4255498 ATAAACTTGC
1 AT-AACTTAC
* *
4255508 ATAAATTAA
1 ATAACTTAC
*
4255517 ATAACTTGC
1 ATAACTTAC
* *
4255526 ATAAATTAA
1 ATAACTTAC
4255535 ATAACTTAC
1 ATAACTTAC
4255544 ATAACTTAC
1 ATAACTTAC
*
4255553 ATAACCTAC
1 ATAACTTAC
4255562 ATAACTTAC
1 ATAACTTAC
4255571 ATAACTTAC
1 ATAACTTAC
*
4255580 ATAAACTTGC
1 AT-AACTTAC
* *
4255590 ATAAATTAA
1 ATAACTTAC
*
4255599 ATAACTTGC
1 ATAACTTAC
* *
4255608 ATAAATTAA
1 ATAACTTAC
4255617 ATAACTTAC
1 ATAACTTAC
4255626 ATAACTTAC
1 ATAACTTAC
4255635 --AACTTAC
1 ATAACTTAC
4255642 ATAACTTACAC
1 ATAACTT--AC
*
4255653 ATAAATTA-
1 ATAACTTAC
4255661 AGTAACTTTAC
1 A-TAAC-TTAC
**
4255672 GGAACTTAC
1 ATAACTTAC
4255681 ATAACTTAC
1 ATAACTTAC
*
4255690 ATAACCTAC
1 ATAACTTAC
4255699 ATAACTTAC
1 ATAACTTAC
* *
4255708 GTAAATTA-
1 ATAACTTAC
4255716 AGTAACTTAC
1 A-TAACTTAC
4255726 ATAACTTAC
1 ATAACTTAC
*
4255735 ATAACCTAC
1 ATAACTTAC
* * *
4255744 ATAAGTAAA
1 ATAACTTAC
4255753 ATAACTTAC
1 ATAACTTAC
4255762 ATAACTTAC
1 ATAACTTAC
*
4255771 ATAACCTAC
1 ATAACTTAC
4255780 ATAACTTAC
1 ATAACTTAC
4255789 ATAACTTAC
1 ATAACTTAC
*
4255798 ATAAACTTGC
1 AT-AACTTAC
* *
4255808 ATAAATTAA
1 ATAACTTAC
4255817 ATAACTTAC
1 ATAACTTAC
4255826 ATAACTTAC
1 ATAACTTAC
*
4255835 ATAACGTAC
1 ATAACTTAC
* *
4255844 ATAAATTAA
1 ATAACTTAC
4255853 ATAACTTAC
1 ATAACTTAC
4255862 ATAACTTAC
1 ATAACTTAC
*
4255871 ATAAATTA-
1 ATAACTTAC
4255879 AGTAACTTAC
1 A-TAACTTAC
4255889 ATAACTTAC
1 ATAACTTAC
*
4255898 ATAAACTTGC
1 AT-AACTTAC
* *
4255908 ATAAATTAA
1 ATAACTTAC
4255917 ATAACTTAC
1 ATAACTTAC
4255926 ATAACTTAC
1 ATAACTTAC
* *
4255935 ACAACCTAC
1 ATAACTTAC
* *
4255944 ATAAATTGC
1 ATAACTTAC
***
4255953 AATGGGTTAC
1 -ATAACTTAC
4255963 ATAACTTAC
1 ATAACTTAC
* *
4255972 ATAACCTAT
1 ATAACTTAC
* *
4255981 ATAAATTAA
1 ATAACTTAC
4255990 ATAACTTAC
1 ATAACTTAC
4255999 ATAACTTAC
1 ATAACTTAC
*
4256008 ATAAATTA-
1 ATAACTTAC
4256016 AGTAACTTAC
1 A-TAACTTAC
4256026 CCGTGCAAAT
Statistics
Matches: 429, Mismatches: 90, Indels: 35
0.77 0.16 0.06
Matches are distributed among these distances:
7 7 0.02
8 3 0.01
9 366 0.85
10 45 0.10
11 8 0.02
ACGTcount: A:0.47, C:0.18, G:0.03, T:0.31
Consensus pattern (9 bp):
ATAACTTAC
Found at i:4255612 original size:100 final size:99
Alignment explanation
Indices: 4255492--4256025 Score: 635
Period size: 100 Copynumber: 5.3 Consensus size: 99
4255482 AACTTACATA
* * * * * *
4255492 ACTTACATAAACTTGCATAAATTAAATAACTTGCATAAATTAAATAACTTACATAACTTACATAA
1 ACTTACAT-AACTTGCATAAATTAAATAACTTACATAACTTACATAACCTACATAAATTAAATAA
* *
4255557 CCTACATAACTTACATAACTTACATAAACTTGCATA
65 CTTACATAACTTACATAACTTACAT-AACTTACATA
* * * *
4255593 AATTAAATAACTTGCATAAATTAAATAACTTACATAACTTAC--AACTTACATAACTTACACATA
1 ACTTACATAACTTGCATAAATTAAATAACTTACATAACTTACATAACCTACATAAATTA-A-ATA
* **
4255656 AATTA-AGTAACTTTACGGAACTTACATAACTTACATA
64 ACTTACA-TAAC-TTACATAACTTACATAACTTACATA
* * * * * *
4255693 ACCTACATAACTTACGTAAATTAAGTAACTTACATAACTTACATAACCTACATAAGTAAAATAAC
1 ACTTACATAACTTGCATAAATTAAATAACTTACATAACTTACATAACCTACATAAATTAAATAAC
*
4255758 TTACATAACTTACATAACCTACATAACTTACATA
66 TTACATAACTTACATAACTTACATAACTTACATA
*
4255792 ACTTACATAAACTTGCATAAATTAAATAACTTACATAACTTACATAACGTACATAAATTAAATAA
1 ACTTACAT-AACTTGCATAAATTAAATAACTTACATAACTTACATAACCTACATAAATTAAATAA
*
4255857 CTTACATAACTTACATAAATTA-AGTAACTTACATA
65 CTTACATAACTTACATAACTTACA-TAACTTACATA
* * *
4255892 ACTTACATAAACTTGCATAAATTAAATAACTTACATAACTTACACAACCTACATAAATTGCAATG
1 ACTTACAT-AACTTGCATAAATTAAATAACTTACATAACTTACATAACCTACATAAATT-AAATA
** * * * *
4255957 GGTTACATAACTTACATAACCTATATAAATTAAATA
64 ACTTACATAACTTACATAACTTACATAACTTACATA
* *
4255993 ACTTACATAACTTACATAAATTAAGTAACTTAC
1 ACTTACATAACTTGCATAAATTAAATAACTTAC
4256026 CCGTGCAAAT
Statistics
Matches: 377, Mismatches: 45, Indels: 23
0.85 0.10 0.05
Matches are distributed among these distances:
98 15 0.04
99 31 0.08
100 258 0.68
101 60 0.16
102 13 0.03
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (99 bp):
ACTTACATAACTTGCATAAATTAAATAACTTACATAACTTACATAACCTACATAAATTAAATAAC
TTACATAACTTACATAACTTACATAACTTACATA
Found at i:4256013 original size:64 final size:65
Alignment explanation
Indices: 4255894--4256014 Score: 163
Period size: 64 Copynumber: 1.9 Consensus size: 65
4255884 CTTACATAAC
* * * *
4255894 TTACATAAACTTGCATAAATTAAATAACTTACATAACTTACACAACCTACATAAATTGCAATGGG
1 TTACATAAACTTACATAAACTAAATAAATTAAATAACTTACACAACCTACATAAATTGCAATGGG
* * * *
4255959 TTACAT-AACTTACATAACCTATATAAATTAAATAACTTACATAACTTACATAAATT
1 TTACATAAACTTACATAAACTAAATAAATTAAATAACTTACACAACCTACATAAATT
4256015 AAGTAACTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
64 42 0.88
65 6 0.12
ACGTcount: A:0.46, C:0.17, G:0.04, T:0.32
Consensus pattern (65 bp):
TTACATAAACTTACATAAACTAAATAAATTAAATAACTTACACAACCTACATAAATTGCAATGGG
Found at i:4259755 original size:66 final size:66
Alignment explanation
Indices: 4259685--4259816 Score: 212
Period size: 66 Copynumber: 2.0 Consensus size: 66
4259675 GACCACAGTT
* *
4259685 GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAGAA-CAGATGCGGCAGCGAGAGAAG
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCGACAACTTA-AAGCAGATGCGGCAGCCAGAGAAG
4259749 CA
65 CA
* *
4259751 GAGGTTCAAAAGAAATATGAAGAACTCCAGCGACAACTTAAAGCTGATGCGGCATCCAGAGAAGC
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCGACAACTTAAAGCAGATGCGGCAGCCAGAGAAGC
4259816 A
66 A
4259817 AAGGCTGCAG
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
65 2 0.03
66 59 0.97
ACGTcount: A:0.42, C:0.19, G:0.25, T:0.14
Consensus pattern (66 bp):
GAGGTTCAAAAGAAATATGAAGAACTCCAGCGACAACTTAAAGCAGATGCGGCAGCCAGAGAAGC
A
Found at i:4260235 original size:43 final size:43
Alignment explanation
Indices: 4260174--4260361 Score: 215
Period size: 43 Copynumber: 4.4 Consensus size: 43
4260164 AAAAGTGGCG
4260174 TTTGTGTAAAAAGCGCCGCTAAAGAACAT-TAGCTTTAGCGGCA
1 TTTGTGTAAAAAGCGCCGCTAAAGAACATGT-GCTTTAGCGGCA
* * * * * *
4260217 TTTGTGTTAGAAGTGCCGCTAAAGAACATGTTCTTTAGTGGCG
1 TTTGTGTAAAAAGCGCCGCTAAAGAACATGTGCTTTAGCGGCA
* *
4260260 TTTGTGTAAAAAGCGCCGCTAAAGAACATGTTCTTCAGC-G--
1 TTTGTGTAAAAAGCGCCGCTAAAGAACATGTGCTTTAGCGGCA
* * *
4260300 TTTGTGTAGAAAA-CGCCGCTAAAGAACATGTTCTTCAGCGGCG
1 TTTGTGTA-AAAAGCGCCGCTAAAGAACATGTGCTTTAGCGGCA
*
4260343 TTTGTGTAGAAAGCGCCGC
1 TTTGTGTAAAAAGCGCCGC
4260362 AAATACTTTT
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
40 34 0.27
41 5 0.04
42 4 0.03
43 83 0.65
44 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (43 bp):
TTTGTGTAAAAAGCGCCGCTAAAGAACATGTGCTTTAGCGGCA
Found at i:4260346 original size:83 final size:85
Alignment explanation
Indices: 4260170--4260361 Score: 266
Period size: 83 Copynumber: 2.3 Consensus size: 85
4260160 AACAAAAAGT
* **
4260170 GGCGTTTGTGTAAAAAGCGCCGCTAAAGAACATTAGCTTTAGCGGCATTTGTGTTAGAAGTGCCG
1 GGCGTTTGTGTAAAAAGCGCCGCTAAAGAACATTAGCTTCAGCGG-ATTTGTGTTAGAAACGCCG
* *
4260235 CTAAAGAACATGTTCTTTAGT
65 CTAAAGAACATGTTCTTCAGC
*
4260256 GGCGTTTGTGTAAAAAGCGCCGCTAAAGAACATGT-TCTTCAGC-G-TTTGTG-TAGAAAACGCC
1 GGCGTTTGTGTAAAAAGCGCCGCTAAAGAACAT-TAGCTTCAGCGGATTTGTGTTAG-AAACGCC
4260317 GCTAAAGAACATGTTCTTCAGC
64 GCTAAAGAACATGTTCTTCAGC
*
4260339 GGCGTTTGTGTAGAAAGCGCCGC
1 GGCGTTTGTGTAAAAAGCGCCGC
4260362 AAATACTTTT
Statistics
Matches: 97, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
82 3 0.03
83 53 0.55
85 1 0.01
86 39 0.40
87 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (85 bp):
GGCGTTTGTGTAAAAAGCGCCGCTAAAGAACATTAGCTTCAGCGGATTTGTGTTAGAAACGCCGC
TAAAGAACATGTTCTTCAGC
Found at i:4266652 original size:147 final size:147
Alignment explanation
Indices: 4266385--4266678 Score: 579
Period size: 147 Copynumber: 2.0 Consensus size: 147
4266375 TCCATCAATC
*
4266385 CGGGTGCTTAAGAGCCTTAAACTTTTTAATTTAAGAGATTGCAAAAGTCTTAGGACTCTTCCAAC
1 CGGGTGCTTAACAGCCTTAAACTTTTTAATTTAAGAGATTGCAAAAGTCTTAGGACTCTTCCAAC
4266450 CAAAATTGGAATGGAATCTCTTGAAACATTAATTCTTTCGGGCTGCTCAAGTCTTGTAAGGTTTC
66 CAAAATTGGAATGGAATCTCTTGAAACATTAATTCTTTCGGGCTGCTCAAGTCTTGTAAGGTTTC
4266515 CGGAGATTGATGGGAAA
131 CGGAGATTGATGGGAAA
4266532 CGGGTGCTTAACAGCCTTAAACTTTTTAATTTAAGAGATTGCAAAAGTCTTAGGACTCTTCCAAC
1 CGGGTGCTTAACAGCCTTAAACTTTTTAATTTAAGAGATTGCAAAAGTCTTAGGACTCTTCCAAC
4266597 CAAAATTGGAATGGAATCTCTTGAAACATTAATTCTTTCGGGCTGCTCAAGTCTTGTAAGGTTTC
66 CAAAATTGGAATGGAATCTCTTGAAACATTAATTCTTTCGGGCTGCTCAAGTCTTGTAAGGTTTC
4266662 CGGAGATTGATGGGAAA
131 CGGAGATTGATGGGAAA
4266679 ATGGAACGTC
Statistics
Matches: 146, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
147 146 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (147 bp):
CGGGTGCTTAACAGCCTTAAACTTTTTAATTTAAGAGATTGCAAAAGTCTTAGGACTCTTCCAAC
CAAAATTGGAATGGAATCTCTTGAAACATTAATTCTTTCGGGCTGCTCAAGTCTTGTAAGGTTTC
CGGAGATTGATGGGAAA
Found at i:4270781 original size:21 final size:21
Alignment explanation
Indices: 4270749--4270789 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
4270739 GAACATTTGG
4270749 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
4270770 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
4270790 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:4273968 original size:43 final size:43
Alignment explanation
Indices: 4273921--4274101 Score: 263
Period size: 43 Copynumber: 4.2 Consensus size: 43
4273911 TAGTGAAAAT
4273921 GCCGCTATAAGTCTTGGCCTTTAGCGGCATTTTTTTTACAAAC
1 GCCGCTATAAGTCTTGGCCTTTAGCGGCATTTTTTTTACAAAC
*
4273964 GCCGCTAAAAGTCTTGGCCTTTAGCGGCACTTTTGTTTTACAAAC
1 GCCGCTATAAGTCTTGGCCTTTAGCGGCA-TTTT-TTTTACAAAC
* * ** *
4274009 GCCGCTATAAGTCTTGGCCTTTAGTGACGCTTTTTTTGCAAAC
1 GCCGCTATAAGTCTTGGCCTTTAGCGGCATTTTTTTTACAAAC
* * *
4274052 GCCGCTATAAGTCTTAGCCATTAGCGGCGTTTTTTTTACAAAC
1 GCCGCTATAAGTCTTGGCCTTTAGCGGCATTTTTTTTACAAAC
4274095 GCCGCTA
1 GCCGCTA
4274102 GTTTAGGTAT
Statistics
Matches: 123, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
43 81 0.66
44 7 0.06
45 35 0.28
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (43 bp):
GCCGCTATAAGTCTTGGCCTTTAGCGGCATTTTTTTTACAAAC
Found at i:4274029 original size:88 final size:86
Alignment explanation
Indices: 4273921--4274101 Score: 263
Period size: 88 Copynumber: 2.1 Consensus size: 86
4273911 TAGTGAAAAT
* * * *
4273921 GCCGCTATAAGTCTTGGCCTTTAGCGGCATTTTTTTTACAAACGCCGCTAAAAGTCTTGGCCTTT
1 GCCGCTATAAGTCTTGGCCTTTAGCGACACTTTTTTTACAAACGCCGCTAAAAGTCTTAGCCATT
4273986 AGCGGCACTTTTGTTTTACAAAC
66 AGCGGC-CTTTT-TTTTACAAAC
* * * *
4274009 GCCGCTATAAGTCTTGGCCTTTAGTGACGCTTTTTTTGCAAACGCCGCTATAAGTCTTAGCCATT
1 GCCGCTATAAGTCTTGGCCTTTAGCGACACTTTTTTTACAAACGCCGCTAAAAGTCTTAGCCATT
*
4274074 AGCGGCGTTTTTTTTACAAAC
66 AGCGGCCTTTTTTTTACAAAC
4274095 GCCGCTA
1 GCCGCTA
4274102 GTTTAGGTAT
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
86 17 0.20
87 4 0.05
88 63 0.75
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (86 bp):
GCCGCTATAAGTCTTGGCCTTTAGCGACACTTTTTTTACAAACGCCGCTAAAAGTCTTAGCCATT
AGCGGCCTTTTTTTTACAAAC
Found at i:4274438 original size:24 final size:21
Alignment explanation
Indices: 4274396--4274454 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
4274386 ATTTTGCTCT
* *
4274396 GCCTCCCTCGCTGTTGCCGTC
1 GCCTCCCTCGCTGCTGCCGCC
*
4274417 GCCTTCCTCGCTGCTGCCGCC
1 GCCTCCCTCGCTGCTGCCGCC
4274438 GCCTCCCTCGCTGCTGC
1 GCCTCCCTCGCTGCTGC
4274455 ATCTGCTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.00, C:0.51, G:0.24, T:0.25
Consensus pattern (21 bp):
GCCTCCCTCGCTGCTGCCGCC
Found at i:4274870 original size:13 final size:14
Alignment explanation
Indices: 4274844--4274872 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
4274834 ACTAACGACG
4274844 AATTAAACCATTAT
1 AATTAAACCATTAT
4274858 AATTAAA-CATTAT
1 AATTAAACCATTAT
4274871 AA
1 AA
4274873 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:4274895 original size:17 final size:19
Alignment explanation
Indices: 4274869--4274907 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
4274859 ATTAAACATT
*
4274869 ATAAATATTTA-TAA-TAA
1 ATAAAAATTTATTAAGTAA
4274886 ATAAAAATTTATTAAGTAA
1 ATAAAAATTTATTAAGTAA
4274905 ATA
1 ATA
4274908 TACCATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 10 0.53
18 3 0.16
19 6 0.32
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
ATAAAAATTTATTAAGTAA
Found at i:4277687 original size:9 final size:9
Alignment explanation
Indices: 4277674--4277746 Score: 100
Period size: 9 Copynumber: 8.6 Consensus size: 9
4277664 AATTTATGTA
*
4277674 TTATGTAAA
1 TTATGTAAG
4277683 TTATGTAAG
1 TTATGTAAG
4277692 TTATGT-A-
1 TTATGTAAG
4277699 TTATGTAAG
1 TTATGTAAG
4277708 TTATGTAAG
1 TTATGTAAG
*
4277717 TTGTGT-A-
1 TTATGTAAG
4277724 TTATGTAAG
1 TTATGTAAG
4277733 TTATGTAAG
1 TTATGTAAG
4277742 TTATG
1 TTATG
4277747 ATATAAAAGA
Statistics
Matches: 57, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
7 11 0.19
8 4 0.07
9 42 0.74
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:4277688 original size:16 final size:17
Alignment explanation
Indices: 4277662--4277746 Score: 79
Period size: 16 Copynumber: 5.0 Consensus size: 17
4277652 TGATATGATA
4277662 TAAATTTATGTA-TTATG
1 TAAA-TTATGTAGTTATG
4277679 TAAATTATGTAAGTTATG
1 TAAATTATGT-AGTTATG
4277697 T--ATTATGTAAGTTATG
1 TAAATTATGT-AGTTATG
* *
4277713 TAAGTTGTGTA-TTATG
1 TAAATTATGTAGTTATG
*
4277729 TAAGTTATGTAAGTTATG
1 TAAATTATGT-AGTTATG
4277747 ATATAAAAGA
Statistics
Matches: 59, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
16 36 0.61
17 7 0.12
18 16 0.27
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.48
Consensus pattern (17 bp):
TAAATTATGTAGTTATG
Found at i:4277695 original size:25 final size:25
Alignment explanation
Indices: 4277667--4277746 Score: 142
Period size: 25 Copynumber: 3.2 Consensus size: 25
4277657 TGATATAAAT
*
4277667 TTATGTATTATGTAAATTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAG
4277692 TTATGTATTATGTAAGTTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAG
*
4277717 TTGTGTATTATGTAAGTTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAG
4277742 TTATG
1 TTATG
4277747 ATATAAAAGA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 52 1.00
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (25 bp):
TTATGTATTATGTAAGTTATGTAAG
Found at i:4278447 original size:30 final size:31
Alignment explanation
Indices: 4278362--4278451 Score: 85
Period size: 30 Copynumber: 2.8 Consensus size: 31
4278352 ACACCTATGG
4278362 AAAGAAACATAAAGCAGACAGTCAGCAGCAAAATA
1 AAAGAAACATAAAG-AGACAGT-A--AGCAAAATA
* ** *
4278397 AAATGATATTTACA-AGACAGTAAGCAAAAT-
1 AAA-GAAACATAAAGAGACAGTAAGCAAAATA
4278427 AAAGAAACATAAAGAGACAGTAAGC
1 AAAGAAACATAAAGAGACAGTAAGC
4278452 CCTAAAATTC
Statistics
Matches: 45, Mismatches: 8, Indels: 9
0.73 0.13 0.15
Matches are distributed among these distances:
29 6 0.13
30 14 0.31
31 8 0.18
33 1 0.02
34 7 0.16
35 3 0.07
36 6 0.13
ACGTcount: A:0.57, C:0.13, G:0.17, T:0.13
Consensus pattern (31 bp):
AAAGAAACATAAAGAGACAGTAAGCAAAATA
Found at i:4287575 original size:153 final size:153
Alignment explanation
Indices: 4287190--4287558 Score: 564
Period size: 153 Copynumber: 2.4 Consensus size: 153
4287180 ATATTTCACC
* ** *
4287190 TGATATTTCTGGTCTATCCTGTTTG-GAAATACTTGATCTTAGTGGTAACAATTTCATCAGCATA
1 TGATATTTCTGGTCTATCCTCTTTGAGTTAT-CTTAATCTTAGTGGTAACAATTTCATCAGCATA
* * * *
4287254 CCTGCATCTCTTACTCGACTCTCGAAGCTTGCATATCTTATATTGTCAAATTGCAACTTGTGCAC
65 CCTGCATCTCTTACTCGACTCTCAAAGCTTGAATATCTTATATTATCAAATTGCAACATGTGCAC
*
4287319 TTTTGGTGAAACAGATACTCATAG
130 TCTTGGTGAAACAGATACTCATAG
*
4287343 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAAGAATTTCATCAGCATAC
1 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
*
4287408 CTGCATCTCTTACTCGACTCTCAAAGCTT-AAGTCTCTTGA-ATTATCAAATTGCAACATGTGCA
66 CTGCATCTCTTACTCGACTCTCAAAGCTTGAA-TATCTT-ATATTATCAAATTGCAACATGTGCA
*
4287471 CTCTTGGTGAAGCAGATACTCATAG
129 CTCTTGGTGAAACAGATACTCATAG
* *
4287496 TGATATTTCTGGTCTATCCTCTTAGAGTTATCTTTATCTTAGTGGTAACAATTTCATCAGCAT
1 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCAT
4287559 TCCTTTGGCT
Statistics
Matches: 198, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
152 1 0.01
153 193 0.97
154 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (153 bp):
TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
CTGCATCTCTTACTCGACTCTCAAAGCTTGAATATCTTATATTATCAAATTGCAACATGTGCACT
CTTGGTGAAACAGATACTCATAG
Found at i:4287615 original size:153 final size:152
Alignment explanation
Indices: 4287190--4287607 Score: 545
Period size: 153 Copynumber: 2.7 Consensus size: 152
4287180 ATATTTCACC
* ** *
4287190 TGATATTTCTGGTCTATCCTGTTTG-GAAATACTTGATCTTAGTGGTAACAATTTCATCAGCATA
1 TGATATTTCTGGTCTATCCTCTTTGAGTTAT-CTTAATCTTAGTGGTAACAATTTCATCAGCATA
* * *
4287254 CCTGCATCTCTTACTCGACTCTCGAAGCTTGCATA-TCTT-ATATTGTCAAATTGCAACTTGTGC
65 CCTGCATCTCTTACTCGACTCTCAAAGC-T-CAAATTCTTGA-ATTGTCAAATTGCAACATGTGC
*
4287317 ACTTTTGGTGAAACAGATACTCATAG
127 ACTCTTGGTGAAACAGATACTCATAG
*
4287343 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAAGAATTTCATCAGCATAC
1 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
* * *
4287408 CTGCATCTCTTACTCGACTCTCAAAGCTTAAGTCTCTTGAATTATCAAATTGCAACATGTGCACT
66 CTGCATCTCTTACTCGACTCTCAAAGCTCAAAT-TCTTGAATTGTCAAATTGCAACATGTGCACT
*
4287473 CTTGGTGAAGCAGATACTCATAG
130 CTTGGTGAAACAGATACTCATAG
* * *
4287496 TGATATTTCTGGTCTATCCTCTTAGAGTTATCTTTATCTTAGTGGTAACAATTTCATCAGCATTC
1 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
**** * * * *
4287561 CTTTGGCTCTTACTCAACTTTCCAGGCTCAAATTGCTTGAATTGTCA
66 CTGCATCTCTTACTCGACTCTCAAAGCTCAAATT-CTTGAATTGTCA
4287608 GGTTGCAAGA
Statistics
Matches: 232, Mismatches: 28, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
151 1 0.00
152 2 0.01
153 225 0.97
154 4 0.02
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (152 bp):
TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
CTGCATCTCTTACTCGACTCTCAAAGCTCAAATTCTTGAATTGTCAAATTGCAACATGTGCACTC
TTGGTGAAACAGATACTCATAG
Found at i:4291084 original size:153 final size:153
Alignment explanation
Indices: 4290825--4291805 Score: 1731
Period size: 153 Copynumber: 6.4 Consensus size: 153
4290815 ATATTCCACC
4290825 TGATATTTCTGGTCTATCCTCTTTGGTATCTCTTGATCTTAGTGGTAATAATTTCATCAGCATAC
1 TGATATTTCTGGTCTATCCTCTTTGGTATCTCTTGATCTTAGTGGTAATAATTTCATCAGCATAC
4290890 CTGCATCTCTTACTCGACTCTCGAAGCTTGAAAATCTTAAATTGTCAAATTGCAACATGTGCACT
66 CTGCATCTCTTACTCGACTCTCGAAGCTTGAAAATCTTAAATTGTCAAATTGCAACATGTGCACT
4290955 TTTGGTGAAGCAGATACTCATAG
131 TTTGGTGAAGCAGATACTCATAG
4290978 TGATATTTCTGGTCTATCCTCTTTGGTATCTCTTGATCTTAGTGGTAATAATTTCATCAGCATAC
1 TGATATTTCTGGTCTATCCTCTTTGGTATCTCTTGATCTTAGTGGTAATAATTTCATCAGCATAC
4291043 CTGCATCTCTTACTCGACTCTCGAAGCTTGAAAATCTTAAATTGTCAAATTGCAACATGTGCACT
66 CTGCATCTCTTACTCGACTCTCGAAGCTTGAAAATCTTAAATTGTCAAATTGCAACATGTGCACT
4291108 TTTGGTGAAGCAGATACTCATAG
131 TTTGGTGAAGCAGATACTCATAG
4291131 TGATATTTCTGGTCTATCCTCTTTGGTATCTCTTGATCTTAGTGGTAATAATTTCATCAGCATAC
1 TGATATTTCTGGTCTATCCTCTTTGGTATCTCTTGATCTTAGTGGTAATAATTTCATCAGCATAC
4291196 CTGCATCTCTTACTCGACTCTCGAAGCTTGAAAATCTTAAATTGTCAAATTGCAACATGTGCACT
66 CTGCATCTCTTACTCGACTCTCGAAGCTTGAAAATCTTAAATTGTCAAATTGCAACATGTGCACT
4291261 TTTGGTGAAGCAGATACTCATAG
131 TTTGGTGAAGCAGATACTCATAG
4291284 TGATATTTCTGGTCTATCCTCTTTGGTATCTCTTGATCTTAGTGGTAATAATTTCATCAGCATAC
1 TGATATTTCTGGTCTATCCTCTTTGGTATCTCTTGATCTTAGTGGTAATAATTTCATCAGCATAC
4291349 CTGCATCTCTTACTCGACTCTCGAAGCTTGAAAATCTTAAATTGTCAAATTGCAACATGTGCACT
66 CTGCATCTCTTACTCGACTCTCGAAGCTTGAAAATCTTAAATTGTCAAATTGCAACATGTGCACT
4291414 TTTGGTGAAGCAGATACTCATAG
131 TTTGGTGAAGCAGATACTCATAG
4291437 TGATATTTCTGGTCTATCCTCTTTGGTATCTCTTGATCTTAGTGGTAATAATTTCATCAGCATAC
1 TGATATTTCTGGTCTATCCTCTTTGGTATCTCTTGATCTTAGTGGTAATAATTTCATCAGCATAC
4291502 CTGCATCTCTTACTCGACTCTCGAAGCTTGAAAATCTTAAATTGTCAAATTGCAACATGTGCACT
66 CTGCATCTCTTACTCGACTCTCGAAGCTTGAAAATCTTAAATTGTCAAATTGCAACATGTGCACT
4291567 TTTGGTGAAGCAGATACTCATAG
131 TTTGGTGAAGCAGATACTCATAG
* * * *
4291590 TGATATTTCTGGTCTATCCTCTTT-G-AGTCATCTTAATCTTAATGGTAACAATTTCATCAGCAA
1 TGATATTTCTGGTCTATCCTCTTTGGTA-TC-TCTTGATCTTAGTGGTAATAATTTCATCAGCAT
* * * * *
4291653 ACCTGCATCTCTTACTCGACTCTCAAAGC-T-CAAGTCACTTCACTTGTCAAATTGCAACATGTG
64 ACCTGCATCTCTTACTCGACTCTCGAAGCTTGAAAAT--CTTAAATTGTCAAATTGCAACATGTG
* *
4291716 CACTCTTGGTGAAGCAGATACTAATAG
127 CACTTTTGGTGAAGCAGATACTCATAG
* * * *
4291743 TGACATTTTTGGTCTATCCTCTTTGAGTTATCT-TT-ATCTTTGTGGTAACAATTTCATCAGCAT
1 TGATATTTCTGGTCTATCCTCTTTG-G-TATCTCTTGATCTTAGTGGTAATAATTTCATCAGCAT
4291806 TCCTTCGGCT
Statistics
Matches: 804, Mismatches: 16, Indels: 16
0.96 0.02 0.02
Matches are distributed among these distances:
151 4 0.00
152 4 0.00
153 789 0.98
154 2 0.00
155 2 0.00
156 2 0.00
157 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (153 bp):
TGATATTTCTGGTCTATCCTCTTTGGTATCTCTTGATCTTAGTGGTAATAATTTCATCAGCATAC
CTGCATCTCTTACTCGACTCTCGAAGCTTGAAAATCTTAAATTGTCAAATTGCAACATGTGCACT
TTTGGTGAAGCAGATACTCATAG
Found at i:4303931 original size:41 final size:41
Alignment explanation
Indices: 4303874--4303984 Score: 213
Period size: 41 Copynumber: 2.7 Consensus size: 41
4303864 TTACAGATCC
*
4303874 TATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCAAACCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATCATATCAAACCT
4303915 TATCTCCCTGAAGTTGCAGTAGAGCAGATCATATCAAACCT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATCATATCAAACCT
4303956 TATCTCCCTGAAGTTGCAGTAGAGCAGAT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGAT
4303985 TAAAGCCACA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
41 69 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.28
Consensus pattern (41 bp):
TATCTCCCTGAAGTTGCAGTAGAGCAGATCATATCAAACCT
Found at i:4305910 original size:3 final size:3
Alignment explanation
Indices: 4305902--4305941 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
4305892 TATACATTTC
* * *
4305902 ATT ATT ATT ATC ATT ATT ATT ATT ATT ATC ATT TTT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
4305942 GTGTTTAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:4309936 original size:27 final size:25
Alignment explanation
Indices: 4309885--4309932 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
4309875 AATGTATGTA
4309885 TTTTTGAAATATTAATGGTATATTT
1 TTTTTGAAATATTAATGGTATATTT
4309910 TTTTGTGAAA-ATTAATGGTATAT
1 TTTT-TGAAATATTAATGGTATAT
4309933 ATTTAATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (25 bp):
TTTTTGAAATATTAATGGTATATTT
Found at i:4311708 original size:153 final size:155
Alignment explanation
Indices: 4311372--4311743 Score: 572
Period size: 153 Copynumber: 2.4 Consensus size: 155
4311362 ATATTCCACC
* * *
4311372 TGATATTTCTGGTCTATCCTCTTTG-GTATCTCTTGATCTTAGTGGTAATAATTTCATCAGCATA
1 TGATATTTCTGGTCTATCCTCTTTGAGT-TATCTTAATCTTAGTGGTAACAATTTCATCAGCATA
* *
4311436 CCTGCATCTCTTACTCGACTCTCGAAGCTTGCAAATCTTATATTAATGTCAAATTGCAACATGTG
65 CCTGCATCTCTTACTCGACTCTCAAAGCTTACAAATCTTATATT-ATGTCAAATTGCAACATGTG
*
4311501 CACTTTTGGTGAAGCAGATACTCATAG
129 CACTCTTGGTGAAGCAGATACTCATAG
* *
4311528 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAAGAATTTCATCCGCATAC
1 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
** *
4311593 CTGCATCTCTTACTCGACTCTCAAAGCTTACGTATCTTGA-A-T-TGTCTAATTGCAACATGTGC
66 CTGCATCTCTTACTCGACTCTCAAAGCTTACAAATCTT-ATATTATGTCAAATTGCAACATGTGC
4311655 ACTCTTGGTGAAGCAGATACTCATAG
130 ACTCTTGGTGAAGCAGATACTCATAG
* *
4311681 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTATTGGTAACAATTTCACCAGCAT
1 TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCAT
4311744 TCCTTTGGCT
Statistics
Matches: 200, Mismatches: 14, Indels: 7
0.90 0.06 0.03
Matches are distributed among these distances:
153 103 0.51
155 1 0.00
156 93 0.47
157 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.39
Consensus pattern (155 bp):
TGATATTTCTGGTCTATCCTCTTTGAGTTATCTTAATCTTAGTGGTAACAATTTCATCAGCATAC
CTGCATCTCTTACTCGACTCTCAAAGCTTACAAATCTTATATTATGTCAAATTGCAACATGTGCA
CTCTTGGTGAAGCAGATACTCATAG
Found at i:4317773 original size:12 final size:12
Alignment explanation
Indices: 4317758--4317793 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
4317748 TTTATACATT
4317758 TCATTATTATTA
1 TCATTATTATTA
4317770 TCATTATTATTA
1 TCATTATTATTA
*
4317782 TCATTTTTATTA
1 TCATTATTATTA
4317794 GTGTTTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.61
Consensus pattern (12 bp):
TCATTATTATTA
Found at i:4319292 original size:14 final size:14
Alignment explanation
Indices: 4319252--4319306 Score: 51
Period size: 14 Copynumber: 4.0 Consensus size: 14
4319242 AGTCTAAAGG
*
4319252 TTTACATTTATTTT
1 TTTACTTTTATTTT
* *
4319266 TTTAGTTCT-TTTT
1 TTTACTTTTATTTT
4319279 TTTACTTTTATTTT
1 TTTACTTTTATTTT
*
4319293 TATT-TTTTTATTTT
1 T-TTACTTTTATTTT
4319307 CACTTGTATG
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
13 11 0.33
14 20 0.61
15 2 0.06
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTACTTTTATTTT
Found at i:4324376 original size:841 final size:841
Alignment explanation
Indices: 4322721--4324617 Score: 3532
Period size: 841 Copynumber: 2.3 Consensus size: 841
4322711 GACCCCTATG
* * *
4322721 CTCATATACTTAC-GTTTTCTAGTTTCTTTGTGG-ATATTGAGCGATCTATTTTCTGATTTTGAA
1 CTCATATACTTACTG-TTTCTAGTTTCTTTCTGGCGTATTGAGCGATCAATTTTCTGATTTTGAA
* * ** * * * * * * * *
4322784 CACCAGATTGAGATATCCA-TCTCCTT-TCATACATCCTCATGTTGTCGTTACCGTCAACTTCTT
65 CACTACATCCACATAT--ATTTTTCTTCTCAAACATCGTCATGTTGTCATTACCTTCAACTTCCT
* * * *
4322847 CCTCCATTTCTAAAAAGAAATATGACGTTTTCTTGAGTTTTAGAGGTGAAGATACTCGCAACAAC
128 CATACATTTCTAGAAAGAAATATGATGTTTTCTTGAGTTTTAGAGGTGAAGATACTCGCAACAAC
4322912 TTCACGGATCATCTTTATGATGCTATAACTAATAGAAAAGTCAACAATATTAATTATATGTCTAA
193 TTCACGGATCATCTTTATGATGCTATAACTAATAGAAAAGTCAACAATATTAATTATATGTCTAA
4322977 CTAATAACATTATAAAAATATATGATTAAATTAGGCTAGAAATTAAATCTTAAATTTAGGCATAA
258 CTAATAACATTATAAAAATATATGATTAAATTAGGCTAGAAATTAAATCTTAAATTTAGGCATAA
4323042 TAAAAAAACTAGAATTGAAATTCTAACATTTTCTTATAATGTAAAAGAAAAAAAATCATCTACAT
323 TAAAAAAACTAGAATTGAAATTCTAACATTTTCTTATAATGTAAAAGAAAAAAAATCATCTACAT
4323107 TAAATTAATAAATTGTATTCGTACATAAAATTTTATGATAGTGAGTAAATATAAGTTATTTTAGT
388 TAAATTAATAAATTGTATTCGTACATAAAATTTTATGATAGTGAGTAAATATAAGTTATTTTAGT
4323172 CTGCACCTAATGAACATTTTAAATGCTTCAAATAGAACTTAATCATATAAAAGGCAAAATGTGAG
453 CTGCACCTAATGAACATTTTAAATGCTTCAAATAGAACTTAATCATATAAAAGGCAAAATGTGAG
4323237 GGACCGAATTTTAAATAACACATTGTCCTCCCTGGACAGGTGTCTCCAAATACTCCTTTAATATA
518 GGACCGAATTTTAAATAACACATTGTCCTCCCTGGACAGGTGTCTCCAAATACTCCTTTAATATA
4323302 TAGTTATATAGACAATTATATGATTATGTCAATGAAAGTAAAACACAAACCGTCCAACACTTTAC
583 TAGTTATATAGACAATTATATGATTATGTCAATGAAAGTAAAACACAAACCGTCCAACACTTTAC
4323367 TTATTACTTAAAATTACTGTAGGCTCCATTTTGTCAACACCCACCTTCTTGGATTCTTCCTCGAA
648 TTATTACTTAAAATTACTGTAGGCTCCATTTTGTCAACACCCACCTTCTTGGATTCTTCCTCGAA
4323432 AGAACATGCATCACCCAATGTCAACACCTACTCGTATTCATTTCGAAAATTCAAAGGTTATAGAG
713 AGAACATGCATCACCCAATGTCAACACCTACTCGTATTCATTTCGAAAATTCAAAGGTTATAGAG
4323497 AAATTGCTTAGAAAAGTCCTTTATTCTTCCCTGGAATTTTCATCTGTTTTTCTCAATCTTCACT
778 AAATTGCTTAGAAAAGTCCTTTATTCTTCCCTGGAATTTTCATCTGTTTTTCTCAATCTTCACT
4323561 CTCATATACTTACTGTTTCTAGTTTCTTTCTGGCGTATTGAGCGATCAATTTTCTGATTTTGAAC
1 CTCATATACTTACTGTTTCTAGTTTCTTTCTGGCGTATTGAGCGATCAATTTTCTGATTTTGAAC
4323626 ACTACATCCACATATATTTTTCTTCTCAAACATCGTCATGTTGTCATTACCTTCAACTTCCTCAT
66 ACTACATCCACATATATTTTTCTTCTCAAACATCGTCATGTTGTCATTACCTTCAACTTCCTCAT
4323691 ACATTTCTAGAAAGAAATATGATGTTTTCTTGAGTTTTAGAGGTGAAGATACTCGCAACAACTTC
131 ACATTTCTAGAAAGAAATATGATGTTTTCTTGAGTTTTAGAGGTGAAGATACTCGCAACAACTTC
4323756 ACGGATCATCTTTATGATGCTATAACTAATAGAAAAGTCAACAATATTAATTATATGTCTAACTA
196 ACGGATCATCTTTATGATGCTATAACTAATAGAAAAGTCAACAATATTAATTATATGTCTAACTA
4323821 ATAACATTATAAAAATATATGATTAAATTAGGCTAGAAATTAAATCTTAAATTTAGGCATAATAA
261 ATAACATTATAAAAATATATGATTAAATTAGGCTAGAAATTAAATCTTAAATTTAGGCATAATAA
4323886 AAAAACTAGAATTGAAATTCTAACATTTTCTTATAATGTAAAAGAAAAAAAATCATCTACATTAA
326 AAAAACTAGAATTGAAATTCTAACATTTTCTTATAATGTAAAAGAAAAAAAATCATCTACATTAA
4323951 ATTAATAAATTGTATTCGTACATAAAATTTTATGATAGTGAGTAAATATAAGTTATTTTAGTCTG
391 ATTAATAAATTGTATTCGTACATAAAATTTTATGATAGTGAGTAAATATAAGTTATTTTAGTCTG
4324016 CACCTAATGAACATTTTAAATGCTTCAAATAGAACTTAATCATATAAAAGGCAAAATGTGAGGGA
456 CACCTAATGAACATTTTAAATGCTTCAAATAGAACTTAATCATATAAAAGGCAAAATGTGAGGGA
4324081 CCGAATTTTAAATAACACATTGTCCTCCCTGGACAGGTGTCTCCAAATACTCCTTTAATATATAG
521 CCGAATTTTAAATAACACATTGTCCTCCCTGGACAGGTGTCTCCAAATACTCCTTTAATATATAG
4324146 TTATATAGACAATTATATGATTATGTCAATGAAAGTAAAACACAAACCGTCCAACACTTTACTTA
586 TTATATAGACAATTATATGATTATGTCAATGAAAGTAAAACACAAACCGTCCAACACTTTACTTA
4324211 TTACTTAAAATTACTGTAGGCTCCATTTTGTCAACACCCACCTTCTTGGATTCTTCCTCGAAAGA
651 TTACTTAAAATTACTGTAGGCTCCATTTTGTCAACACCCACCTTCTTGGATTCTTCCTCGAAAGA
4324276 ACATGCATCACCCAATGTCAACACCTACTCGTATTCATTTCGAAAATTCAAAGGTTATAGAGAAA
716 ACATGCATCACCCAATGTCAACACCTACTCGTATTCATTTCGAAAATTCAAAGGTTATAGAGAAA
4324341 TTGCTTAGAAAAGTCCTTTATTCTTCCCTGGAATTTTCATCTGTTTTTCTCAATCTTCACT
781 TTGCTTAGAAAAGTCCTTTATTCTTCCCTGGAATTTTCATCTGTTTTTCTCAATCTTCACT
4324402 CTCATATACTTACTGTTTCTAGTTTCTTTCTGGCGTATTGAGCGATCAATTTTCTGATTTTGAAC
1 CTCATATACTTACTGTTTCTAGTTTCTTTCTGGCGTATTGAGCGATCAATTTTCTGATTTTGAAC
4324467 ACTACATCCACATATATTTTTCTTCTCAAACATCGTCATGTTGTCATTACCTTCAACTTCCTCAT
66 ACTACATCCACATATATTTTTCTTCTCAAACATCGTCATGTTGTCATTACCTTCAACTTCCTCAT
*
4324532 ACATTTCTAGAAAGAAATATGATGTTTTCTTGAGTTTTAGAGGTGAAGATACTCGCAAAAACTTC
131 ACATTTCTAGAAAGAAATATGATGTTTTCTTGAGTTTTAGAGGTGAAGATACTCGCAACAACTTC
* * *
4324597 ACCGATCATCTCTATGCTGCT
196 ACGGATCATCTTTATGATGCT
4324618 CTAAAGAGGA
Statistics
Matches: 1030, Mismatches: 23, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
839 1 0.00
840 35 0.03
841 994 0.97
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.36
Consensus pattern (841 bp):
CTCATATACTTACTGTTTCTAGTTTCTTTCTGGCGTATTGAGCGATCAATTTTCTGATTTTGAAC
ACTACATCCACATATATTTTTCTTCTCAAACATCGTCATGTTGTCATTACCTTCAACTTCCTCAT
ACATTTCTAGAAAGAAATATGATGTTTTCTTGAGTTTTAGAGGTGAAGATACTCGCAACAACTTC
ACGGATCATCTTTATGATGCTATAACTAATAGAAAAGTCAACAATATTAATTATATGTCTAACTA
ATAACATTATAAAAATATATGATTAAATTAGGCTAGAAATTAAATCTTAAATTTAGGCATAATAA
AAAAACTAGAATTGAAATTCTAACATTTTCTTATAATGTAAAAGAAAAAAAATCATCTACATTAA
ATTAATAAATTGTATTCGTACATAAAATTTTATGATAGTGAGTAAATATAAGTTATTTTAGTCTG
CACCTAATGAACATTTTAAATGCTTCAAATAGAACTTAATCATATAAAAGGCAAAATGTGAGGGA
CCGAATTTTAAATAACACATTGTCCTCCCTGGACAGGTGTCTCCAAATACTCCTTTAATATATAG
TTATATAGACAATTATATGATTATGTCAATGAAAGTAAAACACAAACCGTCCAACACTTTACTTA
TTACTTAAAATTACTGTAGGCTCCATTTTGTCAACACCCACCTTCTTGGATTCTTCCTCGAAAGA
ACATGCATCACCCAATGTCAACACCTACTCGTATTCATTTCGAAAATTCAAAGGTTATAGAGAAA
TTGCTTAGAAAAGTCCTTTATTCTTCCCTGGAATTTTCATCTGTTTTTCTCAATCTTCACT
Found at i:4325141 original size:53 final size:54
Alignment explanation
Indices: 4325044--4325153 Score: 195
Period size: 54 Copynumber: 2.1 Consensus size: 54
4325034 TATATATGTA
4325044 TGTATGTATGTATAACTTTTTTTTTCCCCTAATCCAATGTGTTTAATTGAAAAG
1 TGTATGTATGTATAACTTTTTTTTTCCCCTAATCCAATGTGTTTAATTGAAAAG
* *
4325098 TGTATGTATGTATAACTTTTTTTTTTCCC-AATCCTATGTGTTTAATTGAAAAG
1 TGTATGTATGTATAACTTTTTTTTTCCCCTAATCCAATGTGTTTAATTGAAAAG
4325151 TGT
1 TGT
4325154 CATATTTAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
53 26 0.48
54 28 0.52
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.48
Consensus pattern (54 bp):
TGTATGTATGTATAACTTTTTTTTTCCCCTAATCCAATGTGTTTAATTGAAAAG
Found at i:4325167 original size:54 final size:54
Alignment explanation
Indices: 4325055--4325167 Score: 156
Period size: 53 Copynumber: 2.1 Consensus size: 54
4325045 GTATGTATGT
* **
4325055 ATAACTTTTTTTTTCCCCTAATCCAATGTGTTTAATTGAAAAGTGTATGTATGT
1 ATAACTTTTTTTTTCCCCTAATCCAATGTGTTTAATTGAAAAGTGTATATATAA
* * *
4325109 ATAACTTTTTTTTTTCCC-AATCCTATGTGTTTAATTGAAAAGTGTCATATTTAA
1 ATAACTTTTTTTTTCCCCTAATCCAATGTGTTTAATTGAAAAGTGT-ATATATAA
4325163 ATAAC
1 ATAAC
4325168 AGATCTTGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 26 0.50
54 26 0.50
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.46
Consensus pattern (54 bp):
ATAACTTTTTTTTTCCCCTAATCCAATGTGTTTAATTGAAAAGTGTATATATAA
Found at i:4330716 original size:3 final size:3
Alignment explanation
Indices: 4330708--4330754 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
4330698 ATTAGCATTG
4330708 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
4330755 CACTATTTAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:4331201 original size:6 final size:6
Alignment explanation
Indices: 4331190--4331218 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
4331180 CGCACCTATA
4331190 TATATC TATATC TATATC TATATC TATAT
1 TATATC TATATC TATATC TATATC TATAT
4331219 ATGTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (6 bp):
TATATC
Found at i:4331292 original size:19 final size:20
Alignment explanation
Indices: 4331270--4331307 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
4331260 TCTATGTATT
*
4331270 TTTTATATATAT-TACATAA
1 TTTTATATACATATACATAA
4331289 TTTTATATACATATACATA
1 TTTTATATACATATACATA
4331308 GATGTACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (20 bp):
TTTTATATACATATACATAA
Found at i:4338348 original size:44 final size:42
Alignment explanation
Indices: 4338280--4338366 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 42
4338270 CGAATTAGTT
4338280 TTCCATACAGATTTCTACATTATTAATATGGAGGATGATAAC
1 TTCCATACAGATTTCTACATTATTAATATGGAGGATGATAAC
* *
4338322 NNTTCCCTACAGATTTCTACATTATTAATTTGGAGGATGATAAC
1 --TTCCATACAGATTTCTACATTATTAATATGGAGGATGATAAC
4338366 T
1 T
4338367 CAACTAATTC
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
42 1 0.02
44 40 0.98
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.37
Consensus pattern (42 bp):
TTCCATACAGATTTCTACATTATTAATATGGAGGATGATAAC
Found at i:4339964 original size:17 final size:17
Alignment explanation
Indices: 4339938--4339984 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
4339928 AATTTTGCTA
4339938 TTATTATTATTTAC-TATT
1 TTATT-TTATTTACAT-TT
*
4339956 TTATTTTATTTTCATTT
1 TTATTTTATTTACATTT
4339973 TTATTTTTATTT
1 TTA-TTTTATTT
4339985 TTGCAGGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 12 0.46
18 14 0.54
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.74
Consensus pattern (17 bp):
TTATTTTATTTACATTT
Found at i:4339972 original size:23 final size:23
Alignment explanation
Indices: 4339938--4339985 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
4339928 AATTTTGCTA
4339938 TTATTATTATTTACTA-TTTTATT
1 TTATTATTATTT-CTATTTTTATT
*
4339961 TTATT-TTCATTTTTATTTTTATT
1 TTATTATT-ATTTCTATTTTTATT
4339984 TT
1 TT
4339986 TGCAGGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (23 bp):
TTATTATTATTTCTATTTTTATT
Found at i:4339986 original size:6 final size:6
Alignment explanation
Indices: 4339954--4339986 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
4339944 TTATTTACTA
*
4339954 TTTTA- TTTTAT TTTCAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
4339987 GCAGGAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:4340431 original size:3 final size:3
Alignment explanation
Indices: 4340425--4340463 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
4340415 ATAAAAAAAG
4340425 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
4340464 CTCCTCTGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:4343341 original size:49 final size:49
Alignment explanation
Indices: 4343278--4343387 Score: 159
Period size: 49 Copynumber: 2.2 Consensus size: 49
4343268 ACTTTACCTG
* **
4343278 AAAAAGAAG-AAACCAAGGTGAAAACCTGCAAAGGGCACCTTGAGTCCT
1 AAAAAAAAGAAAACCAAGGTGAAAACCTGCAAAGGGCACCTTGAGTCAA
* *
4343326 AAAAAAAAGAAAACCAAGGTGAAAACCTGCAAAGGGCGCTTTGAGTCAA
1 AAAAAAAAGAAAACCAAGGTGAAAACCTGCAAAGGGCACCTTGAGTCAA
4343375 AAAAAGAAAGAAA
1 AAAAA-AAAGAAA
4343388 GAAAAGAAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
48 8 0.15
49 40 0.73
50 7 0.13
ACGTcount: A:0.51, C:0.16, G:0.22, T:0.11
Consensus pattern (49 bp):
AAAAAAAAGAAAACCAAGGTGAAAACCTGCAAAGGGCACCTTGAGTCAA
Found at i:4343408 original size:16 final size:15
Alignment explanation
Indices: 4343385--4343414 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
4343375 AAAAAGAAAG
4343385 AAAGAAAAGAAAAAC
1 AAAGAAAAGAAAAAC
4343400 AAAGAAAAAGAAAAA
1 AAAG-AAAAGAAAAA
4343415 AAGAGAGGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.83, C:0.03, G:0.13, T:0.00
Consensus pattern (15 bp):
AAAGAAAAGAAAAAC
Found at i:4343416 original size:19 final size:19
Alignment explanation
Indices: 4343373--4343416 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
4343363 GCTTTGAGTC
*
4343373 AAAAAAAGAAAGAAAGAAA
1 AAAAAAACAAAGAAAGAAA
* *
4343392 AGAAAAACAAAGAAA-AAG
1 AAAAAAACAAAGAAAGAAA
4343410 AAAAAAA
1 AAAAAAA
4343417 GAGAGGCTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.84, C:0.02, G:0.14, T:0.00
Consensus pattern (19 bp):
AAAAAAACAAAGAAAGAAA
Found at i:4343551 original size:41 final size:42
Alignment explanation
Indices: 4343489--4343568 Score: 126
Period size: 41 Copynumber: 1.9 Consensus size: 42
4343479 CCCAAAAAGG
*
4343489 GCAGCTCAAATTTTGATCAGAATGGGACATGAGGTGATCAGA
1 GCAGCTCAAATTTTGACCAGAATGGGACATGAGGTGATCAGA
* *
4343531 GCAGC-CAAATTTTGACCAGAATGGGGCATGTGGTGATC
1 GCAGCTCAAATTTTGACCAGAATGGGACATGAGGTGATC
4343569 TTGCTATACC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
41 30 0.86
42 5 0.14
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (42 bp):
GCAGCTCAAATTTTGACCAGAATGGGACATGAGGTGATCAGA
Found at i:4344853 original size:89 final size:89
Alignment explanation
Indices: 4344726--4344906 Score: 231
Period size: 89 Copynumber: 2.0 Consensus size: 89
4344716 GTAGTGAAAC
* * * * *
4344726 AGATTGAAGACACCAGCCTCACCTCCCTGAGTTTGCAGC-AGAGCGGAGTAAAAATAGC-AGATC
1 AGATCGAAAACACCAGCCTCACCTCCCTGAGTTGGCAGCGA-AGCAGACTAAAAATAGCAAG-TC
* *
4344789 TTGTCTTTCTGTATTGGCAGCGAAGT
64 TTGTCTTCCTGTATTGCCAGCGAAGT
* * *
4344815 AGATCGAAAACACCAGCCTCACCTCCCTGAGTTGGCAGCGAAGTAGACTGAAGATAGCAAGTCTT
1 AGATCGAAAACACCAGCCTCACCTCCCTGAGTTGGCAGCGAAGCAGACTAAAAATAGCAAGTCTT
*
4344880 GTCTTCCTGTATTGCCAGTGAAGT
66 GTCTTCCTGTATTGCCAGCGAAGT
4344904 AGA
1 AGA
4344907 CTGAAGATTT
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
89 76 0.96
90 3 0.04
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (89 bp):
AGATCGAAAACACCAGCCTCACCTCCCTGAGTTGGCAGCGAAGCAGACTAAAAATAGCAAGTCTT
GTCTTCCTGTATTGCCAGCGAAGT
Found at i:4345406 original size:44 final size:43
Alignment explanation
Indices: 4345356--4345940 Score: 158
Period size: 44 Copynumber: 13.7 Consensus size: 43
4345346 AAATTAATCC
**
4345356 TATCTCTCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCT
1 TATCTCTCTGAAGTTGCAGTAGAGTAGA-TAAAACCACAGATCT
*** *
4345400 TATCTCTCTGAAGTTGCAGTAGAGTAGATCGTATCA-AG-TCT
1 TATCTCTCTGAAGTTGCAGTAGAGTAGATAAAACCACAGATCT
* * * * * * * *
4345441 TATCTCCCT-AAGTAGTAGTGGAGAAGACAGAAGA-AATCA-ATCC
1 TATCTCTCTGAAGTTGCAGTAGAGTAGATA-AA-ACCA-CAGATCT
* * *
4345484 TATCTCCCTGAAGTTGTAGTGGAGT-GAATTAAAACCACAGATCT
1 TATCTCTCTGAAGTTGCAGTAGAGTAG-A-TAAAACCACAGATCT
*** *
4345528 TATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCA-AG-TCT
1 TATCTCTCTGAAGTTGCAGTAGAGTAGATAAAACCACAGATCT
* ** * ** * * * *
4345569 TATCTCCCT-AAGCAGTAGCGGAGCAGATAGAAGA-AATTA-ATCC
1 TATCTCTCTGAAGTTGCAGTAGAGTAGATA-AA-ACCA-CAGATCT
* * **
4345612 TATCTCCCTGAAGTTACAGT-GAAGCGGATTAAAACCACAGATCT
1 TATCTCTCTGAAGTTGCAGTAG-AGTAGA-TAAAACCACAGATCT
* *** *
4345656 TACCTCTC-GAAAGTTGCAGTAGAGTAGATCGCATCA-AG-TCT
1 TATCTCTCTG-AAGTTGCAGTAGAGTAGATAAAACCACAGATCT
* ** * * * * *
4345697 TATCTCCCT-AAGCAGTAGTGGAGCAGACATAAGAA--ATTA-ATCC
1 TATCTCTCTGAAGTTGCAGTAGAGTAG--ATAA-AACCA-CAGATCT
* * * * *
4345740 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACCAGAGATCT
1 TATCTCTCTGAAGTTGCAGTAGAGTAGA-TAAAACCACAGATCT
* *** *
4345784 TATCTCTCTGAAGTTGCAGTAAAGTAGATCGCATCA-AG-TCT
1 TATCTCTCTGAAGTTGCAGTAGAGTAGATAAAACCACAGATCT
* ** * * * * * * *
4345825 TATCTC-CAT-AGGCAGTAGTGGAGCAGACAGAAGA-AATTA-ATCC
1 TATCTCTC-TGAAGTTGCAGTAGAGTAGATA-AA-ACCA-CAGATCT
* * *
4345868 TATCTCCCTGAAGTTGCAGTAAAGTGGATTAAAACCACAGATCT
1 TATCTCTCTGAAGTTGCAGTAGAGTAGA-TAAAACCACAGATCT
4345912 TATCTCTCTGAAGTTGCAGTAGAGTAGAT
1 TATCTCTCTGAAGTTGCAGTAGAGTAGAT
4345941 CGCATCAAGT
Statistics
Matches: 383, Mismatches: 112, Indels: 93
0.65 0.19 0.16
Matches are distributed among these distances:
40 51 0.13
41 45 0.12
42 16 0.04
43 78 0.20
44 187 0.49
45 6 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (43 bp):
TATCTCTCTGAAGTTGCAGTAGAGTAGATAAAACCACAGATCT
Found at i:4346320 original size:128 final size:128
Alignment explanation
Indices: 4345093--4346288 Score: 1802
Period size: 128 Copynumber: 9.3 Consensus size: 128
4345083 TTTAAGCCAC
* * *
4345093 CAATCCTATCTTCCTGAAGTTGCAGTGGAACGGATTAAAACCATAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * *
4345158 GCAGTAGAGTACATCGCATTAAGTCTTATCTCCCTAAGCAGTAGTGGAGAAGACAGAAGAAAT
66 GCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
* * **
4345221 CAATCCAATCTCCCTAAAGTTATAGTGGAGCGGATTCAAAACCACAGATCTTATCTCTCTGAAGT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATT-AAAACCACAGATCTTATCTCTCTGAAGT
* * *
4345286 TGCAGTAGAGTAGATTGCATTAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
65 TGCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
* * *
4345350 TAATCCTATCTCTCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * *
4345415 GCAGTAGAGTAGATCGTATCAAGTCTTATCTCCCTAAGTAGTAGTGGAGAAGACAGAAGAAAT
66 GCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
* * *
4345478 CAATCCTATCTCCCTGAAGTTGTAGTGGAGTGAATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* *
4345543 GCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGATAGAAGAAAT
66 GCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
* * * *
4345606 TAATCCTATCTCCCTGAAGTTACAGTGAAGCGGATTAAAACCACAGATCTTACCTCTC-GAAAGT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTG-AAGT
*
4345670 TGCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACATAAGAAAT
65 TGCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
* * * *
4345734 TAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACCAGAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * *
4345799 GCAGTAAAGTAGATCGCATCAAGTCTTATCTCCATAGGCAGTAGTGGAGCAGACAGAAGAAAT
66 GCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
* ** *
4345862 TAATCCTATCTCCCTGAAGTTGCAGTAAAGTGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
4345927 GCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
66 GCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
* * * * *
4345990 CAATCCTATCTCTCTAAATTTACAGTGGAACGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * * *
4346055 GTAGTAAAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGATAGAAGAAAT
66 GCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
* * * *
4346118 TAATCCTATCTCCCTGAAGTTACAGTGAAGCGGATTAAAACCACAGATCTTACCTCTC-GAAAGT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTG-AAGT
* * * *
4346182 TGCAGTAGAGTAGATCGCATCATGTATTATTTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAAT
65 TGCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
* * * *
4346246 CAATTCTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAACCA
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCA
4346289 TGAATCTCGT
Statistics
Matches: 965, Mismatches: 99, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
127 2 0.00
128 846 0.88
129 117 0.12
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (128 bp):
CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
GCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
Found at i:4346985 original size:27 final size:26
Alignment explanation
Indices: 4346921--4346985 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 26
4346911 ATAGATGTGA
* *
4346921 CTTTTTCATTTTTTTAATTTTTTCTT
1 CTTTTTCATTTATTCAATTTTTTCTT
* *
4346947 CTTTATTTATTTATTCATTTTTTTCTT
1 CTTT-TTCATTTATTCAATTTTTTCTT
4346974 CTTTTTACATTT
1 CTTTTT-CATTT
4346986 TGTACATGAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.19
27 26 0.81
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.74
Consensus pattern (26 bp):
CTTTTTCATTTATTCAATTTTTTCTT
Found at i:4347784 original size:3 final size:3
Alignment explanation
Indices: 4347776--4347801 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
4347766 ATTAGCATTG
4347776 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
4347802 CACTATTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:4348248 original size:6 final size:6
Alignment explanation
Indices: 4348237--4348265 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
4348227 CGCACCTATA
4348237 TATATC TATATC TATATC TATATC TATAT
1 TATATC TATATC TATATC TATATC TATAT
4348266 ATGTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (6 bp):
TATATC
Found at i:4348339 original size:19 final size:20
Alignment explanation
Indices: 4348317--4348354 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
4348307 TCTATGTATT
*
4348317 TTTTATATATAT-TACATAA
1 TTTTATATACATATACATAA
4348336 TTTTATATACATATACATA
1 TTTTATATACATATACATA
4348355 GATGTACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (20 bp):
TTTTATATACATATACATAA
Found at i:4352790 original size:30 final size:30
Alignment explanation
Indices: 4352754--4352814 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
4352744 CAAATTTCAG
* * *
4352754 GAGCCACACGGGTTGGGCACACGCCCTTGT
1 GAGCCACACGGGCTGGACACACGCCCATGT
4352784 GAGCCACACGGGCTGGACACACGCCCATGT
1 GAGCCACACGGGCTGGACACACGCCCATGT
4352814 G
1 G
4352815 CCAGCCCGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.20, C:0.34, G:0.33, T:0.13
Consensus pattern (30 bp):
GAGCCACACGGGCTGGACACACGCCCATGT
Found at i:4353488 original size:12 final size:12
Alignment explanation
Indices: 4353471--4353495 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4353461 ACTTGTAAAG
4353471 TTATTATATAAT
1 TTATTATATAAT
4353483 TTATTATATAAT
1 TTATTATATAAT
4353495 T
1 T
4353496 ATGTTATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTATTATATAAT
Found at i:4367369 original size:9 final size:9
Alignment explanation
Indices: 4367341--4367370 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
4367331 TCTCTTTTCG
4367341 GTAGCATCT
1 GTAGCATCT
*
4367350 GAAGCATCT
1 GTAGCATCT
4367359 GTAGCATCT
1 GTAGCATCT
4367368 GTA
1 GTA
4367371 TCACTCTCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (9 bp):
GTAGCATCT
Found at i:4370189 original size:13 final size:13
Alignment explanation
Indices: 4370173--4370197 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4370163 AGTATTCAAT
4370173 CCAACCCAATTAC
1 CCAACCCAATTAC
4370186 CCAACCCAATTA
1 CCAACCCAATTA
4370198 ATCATAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.44, G:0.00, T:0.16
Consensus pattern (13 bp):
CCAACCCAATTAC
Found at i:4370316 original size:9 final size:9
Alignment explanation
Indices: 4370296--4370362 Score: 91
Period size: 9 Copynumber: 7.4 Consensus size: 9
4370286 GTAGTGATTC
*
4370296 AATTCAGTT
1 AATTCGGTT
*
4370305 AATTCGGGT
1 AATTCGGTT
4370314 AATTCGAG-T
1 AATTCG-GTT
4370323 AATTCGGTT
1 AATTCGGTT
4370332 AATTCGGTT
1 AATTCGGTT
*
4370341 AATTTGGTT
1 AATTCGGTT
4370350 AATTCGGTT
1 AATTCGGTT
4370359 AATT
1 AATT
4370363 TTTAACCAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
8 1 0.02
9 50 0.96
10 1 0.02
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (9 bp):
AATTCGGTT
Found at i:4373005 original size:16 final size:16
Alignment explanation
Indices: 4372973--4373006 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4372963 ATTGTTTTAG
*
4372973 TTATTTATTTAATTTT
1 TTATTTATTTAACTTT
*
4372989 TTATTTATTTAGCTTT
1 TTATTTATTTAACTTT
4373005 TT
1 TT
4373007 TTAACTTGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (16 bp):
TTATTTATTTAACTTT
Found at i:4376512 original size:42 final size:42
Alignment explanation
Indices: 4376453--4376536 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
4376443 TATCCCTAAA
4376453 TTTCCTTTTATCTTCAATTTAGTCCCTACAAGATGAAAAACC
1 TTTCCTTTTATCTTCAATTTAGTCCCTACAAGATGAAAAACC
*
4376495 TTTCCTTTTGTCTTCAATTTAGTCCCTACAAGATGAAAAACC
1 TTTCCTTTTATCTTCAATTTAGTCCCTACAAGATGAAAAACC
4376537 ATAAACAACC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (42 bp):
TTTCCTTTTATCTTCAATTTAGTCCCTACAAGATGAAAAACC
Found at i:4377237 original size:18 final size:18
Alignment explanation
Indices: 4377214--4377256 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
4377204 CAATAGGTTT
4377214 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
*
4377232 TTAATTAAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
4377250 TTAATTA
1 TTAATTA
4377257 CATGTTGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:4378052 original size:34 final size:32
Alignment explanation
Indices: 4378014--4378080 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 32
4378004 TTTTTTAAAT
4378014 AAATA-TCAAAAATTTATTTTAAAAATTAAAAAAA
1 AAATATTCAAAAA--TATTTT-AAAATTAAAAAAA
*
4378048 AAATATTTTAAAAATATTTTAAAATTAAAAAAA
1 AAATA-TTCAAAAATATTTTAAAATTAAAAAAA
4378081 TTTTAAAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
33 13 0.43
34 11 0.37
36 6 0.20
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.34
Consensus pattern (32 bp):
AAATATTCAAAAATATTTTAAAATTAAAAAAA
Found at i:4378060 original size:11 final size:11
Alignment explanation
Indices: 4378046--4378152 Score: 81
Period size: 11 Copynumber: 10.4 Consensus size: 11
4378036 AAATTAAAAA
4378046 AAAAATATTTT
1 AAAAATATTTT
4378057 AAAAATATTTT
1 AAAAATATTTT
4378068 --AAA-A--TT
1 AAAAATATTTT
*
4378074 AAAAAAATTTT
1 AAAAATATTTT
*
4378085 AAAAGTATTTT
1 AAAAATATTTT
4378096 AAAAATATTTT
1 AAAAATATTTT
4378107 --AAA-A--TT
1 AAAAATATTTT
*
4378113 AAAAAAATTTT
1 AAAAATATTTT
4378124 AAAAAAAGTATTTT
1 --AAAAA-TATTTT
*
4378138 AAAAGTATTTT
1 AAAAATATTTT
4378149 AAAA
1 AAAA
4378153 TTAAAAAAAT
Statistics
Matches: 78, Mismatches: 5, Indels: 26
0.72 0.05 0.24
Matches are distributed among these distances:
6 4 0.05
8 8 0.10
9 8 0.10
11 44 0.56
12 4 0.05
13 5 0.06
14 5 0.06
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:4378096 original size:39 final size:40
Alignment explanation
Indices: 4378045--4378162 Score: 193
Period size: 39 Copynumber: 2.9 Consensus size: 40
4378035 AAAATTAAAA
*
4378045 AAAAAATATTTTAAAAATATTTTAAAATTAAAAAAATTTT
1 AAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATTTT
4378085 -AAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATTTT
1 AAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATTTT
*
4378124 AAAAAAAGTATTTTAAAAGTATTTTAAAATTAAAAAAAT
1 --AAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAAT
4378163 AAAAAAAAAT
Statistics
Matches: 73, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
39 38 0.52
42 35 0.48
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (40 bp):
AAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATTTT
Found at i:4380419 original size:15 final size:13
Alignment explanation
Indices: 4380385--4380418 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
4380375 TATACATTAT
*
4380385 TTATTTTATTTTC
1 TTATTTTATATTC
4380398 TTATTTTATATTC
1 TTATTTTATATTC
4380411 TTGATTTT
1 TT-ATTTT
4380419 TTTAGGCTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.18, C:0.06, G:0.03, T:0.74
Consensus pattern (13 bp):
TTATTTTATATTC
Found at i:4383824 original size:111 final size:110
Alignment explanation
Indices: 4383602--4383890 Score: 384
Period size: 111 Copynumber: 2.6 Consensus size: 110
4383592 TGGTCAAATG
* * * * ** **
4383602 GAAAAATCGAAACCCAGCGCATTAGGGCACGTTTCCTTAAATTTCCAAACGCAAAATATTATCTT
1 GAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTT
* * *
4383667 A-CTTCGAAATTTTTAAAAGGATATTTAGACATTTGGTTGAATGA
66 ATTTTCGAAATTTTTAAAAGGATATTAAGACATTTGGTTGAACGA
* *
4383711 GAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAACGCAAAACATTGCCT
1 GAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTT-CCAAACGCAAAATATTGCCT
*
4383776 TATTTTAC-AAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGA
65 TATTTT-CGAAATTTTTAAAAGGATATTAAGACATTTGGTTGAACGA
* * * *
4383822 GAAAAATCGACACCCACCACCTTAGGGCACGTTTTCTCGAATTTCCAAATGCTAAATATTGCCTC
1 GAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTT
4383887 ATTT
66 ATTT
4383891 AGAAAATTTT
Statistics
Matches: 157, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
109 37 0.24
110 40 0.25
111 79 0.50
112 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (110 bp):
GAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTT
ATTTTCGAAATTTTTAAAAGGATATTAAGACATTTGGTTGAACGA
Found at i:4385639 original size:44 final size:44
Alignment explanation
Indices: 4385586--4385686 Score: 130
Period size: 44 Copynumber: 2.3 Consensus size: 44
4385576 CCTCGATCTA
* * *
4385586 CTCCGCTACTGCTGAGGAAGGCAAGATCTACCATCTTTGACCTG
1 CTCCACTACTGCTGAGGAAGACAAGATCTACCATCTTCGACCTG
* * * *
4385630 CTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTG
1 CTCCACTACTGCTGAGGAAGACAAGATCTACCATCTTCGACCTG
*
4385674 CTCCACTATTGCT
1 CTCCACTACTGCT
4385687 TAGGGAGATA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.28
Consensus pattern (44 bp):
CTCCACTACTGCTGAGGAAGACAAGATCTACCATCTTCGACCTG
Found at i:4385687 original size:44 final size:43
Alignment explanation
Indices: 4385610--4385786 Score: 203
Period size: 44 Copynumber: 4.0 Consensus size: 43
4385600 AGGAAGGCAA
4385610 GATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAG
1 GATCTACCATC-TTGACCTGCTCCACTACTGCTTAGGGAGATAG
*
4385654 GATCTACCATCTTCGACCTGCTCCACTATTGCTTAGGGAGATAG
1 GATCTACCATCTT-GACCTGCTCCACTACTGCTTAGGGAGATAG
***** * * * *
4385698 GA-CTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAG
1 GATCTACCATCTT-GACCTGCTCCACTACTGCTTAGGGAGATAG
* *
4385741 GATCTACCATCTTTATCCTGCCCCACTACTGCTTAGGGAGATAG
1 GATCTACCATCTTGA-CCTGCTCCACTACTGCTTAGGGAGATAG
4385785 GA
1 GA
4385787 CTGGTGGCTT
Statistics
Matches: 108, Mismatches: 22, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
43 35 0.32
44 73 0.68
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.29
Consensus pattern (43 bp):
GATCTACCATCTTGACCTGCTCCACTACTGCTTAGGGAGATAG
Found at i:4385732 original size:43 final size:43
Alignment explanation
Indices: 4385627--4385819 Score: 181
Period size: 44 Copynumber: 4.4 Consensus size: 43
4385617 CATCTTTGAC
***** ** *
4385627 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGAC
1 CTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAAT
*
4385671 CTGCTCCACTATTGCTTAGGGAGATAGGACTGGTGGCTTAAAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAAT
* * ***** *
4385714 CTGCTTCACTACTGCTTAGGAAGATAGGATCTACCATCTT-TAT
1 CTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAAT
*
4385757 CCTGCCCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAAT
1 -CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAAT
*
4385801 CTGCTTCACTACTGCTTAG
1 CTGCTCCACTACTGCTTAG
4385820 ATAAGATTCG
Statistics
Matches: 117, Mismatches: 29, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
43 56 0.48
44 61 0.52
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (43 bp):
CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAAT
Found at i:4385772 original size:175 final size:175
Alignment explanation
Indices: 4385452--4385773 Score: 425
Period size: 175 Copynumber: 1.8 Consensus size: 175
4385442 TTGATGCGAT
*
4385452 CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAGGG
* * * * *
4385517 AGATAGGACTGGTGGCTTTAATTTGCTTCCTACTACCTTGGAAAGATAAGATTTGCCGTCCTCGA
66 AGATAGGACTGGTGGCTTAAATCTGCTTCCTACTACCTTGGAAAGATAAGATCTACCATCCTCGA
* *
4385582 TCTACTCCGCTACTGCTGAGGAAGGCAAGATCTACCATCTTTGAC
131 TCTACCCCACTACTGCTGAGGAAGGCAAGATCTACCATCTTTGAC
* * * * * *
4385627 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTATTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAGGG
* * *
4385692 AGATAGGACTGGTGGCTTAAATCTGCTTCACTACT-GCTTAGG-AAGATAGGATCTACCAT-CTT
66 AGATAGGACTGGTGGCTTAAATCTGCTTC-CTACTACCTT-GGAAAGATAAGATCTACCATCCTC
* *
4385754 TATCCTGCCCCACTACTGCT
129 GAT-CTACCCCACTACTGCT
4385774 TAGGGAGATA
Statistics
Matches: 125, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
174 4 0.03
175 114 0.91
176 7 0.06
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (175 bp):
CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAGGG
AGATAGGACTGGTGGCTTAAATCTGCTTCCTACTACCTTGGAAAGATAAGATCTACCATCCTCGA
TCTACCCCACTACTGCTGAGGAAGGCAAGATCTACCATCTTTGAC
Found at i:4385774 original size:87 final size:87
Alignment explanation
Indices: 4385412--4385819 Score: 335
Period size: 87 Copynumber: 4.7 Consensus size: 87
4385402 TTTCTTCTGT
* * * * * *
4385412 CTGCTCCACTACTGCTTAGGGAGATAAGACTTGAT-GC---GATCTGCTCCACTACTGCTTAGGG
1 CTGCCCCACTACTGCTTAGGGAGATAGGAC-TGGTGGCTTAAATCTGCTTCACTACTGCTTAGGA
* * *
4385473 AGATAAGATCTACAATCTTCAAC
65 AGATAGGATCTACCATCTTCGAC
* * * * * * *
4385496 CTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTTAATTTGCTTC-CTACTACCTT-GGA
1 CTGCCCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACT-GCTTAGG-
* * * * * *
4385559 AAGATAAGATTTGCCGTCCTCGAT
64 AAGATAGGATCTACCATCTTCGAC
* * * * * ** * ***** ** * * *
4385583 CTACTCCGCTACTGCTGAGGAAGGCAAGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGG
1 CTGCCCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGA
4385648 AGATAGGATCTACCATCTTCGAC
65 AGATAGGATCTACCATCTTCGAC
* *
4385671 CTGCTCCACTATTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
1 CTGCCCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
*
4385736 GATAGGATCTACCATCTT-TATC
66 GATAGGATCTACCATCTTCGA-C
4385758 CTGCCCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAG
1 CTGCCCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAG
4385820 ATAAGATTCG
Statistics
Matches: 252, Mismatches: 62, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
83 3 0.01
84 28 0.11
86 8 0.03
87 153 0.61
88 53 0.21
89 7 0.03
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (87 bp):
CTGCCCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAA
GATAGGATCTACCATCTTCGAC
Found at i:4386001 original size:86 final size:86
Alignment explanation
Indices: 4385892--4387261 Score: 2319
Period size: 86 Copynumber: 15.9 Consensus size: 86
4385882 AGTCTGGTCT
* *
4385892 GCTGTTAACGCAGGAAGGCAAGATCTGTTTCTTTAACCAACTCCACTGCAACCGATGGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
* *
4385957 GCTTTGTTTTCGATCTACTTC
66 GCTTTGTTTTTGATCTGCTTC
* * *
4385978 GCTGTTAACACAAGAAGGCAAGATCAGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
*
4386043 GCTTTGTTTTTTATCTGCTTC
66 GCTTTGTTTTTGATCTGCTTC
*
4386064 GCTGTTAACGCAGGAAGGCAAGATCAGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
*
4386129 GCTTTGTTTTTTATCTGCTTC
66 GCTTTGTTTTTGATCTGCTTC
*
4386150 GCTGTTAACGCAGGAAGGCAAGATCAGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
*
4386215 GCTTTGTTTTTGATCTGTTTC
66 GCTTTGTTTTTGATCTGCTTC
4386236 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
*
4386301 GCTTTGTTTTTTATCTGCTTC
66 GCTTTGTTTTTGATCTGCTTC
** *
4386322 GCTGTTAACGCAGGAAGGCAAGATCTATTTCTTTAACCAGCTCCACTGCAACTGATGGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
*
4386387 GCTTTGTTTTCGATCTGCTTC
66 GCTTTGTTTTTGATCTGCTTC
*
4386408 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATCGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
*
4386473 GCTTTGTTTTTGATCTACTTC
66 GCTTTGTTTTTGATCTGCTTC
*
4386494 GCTGTTAACGCAGGAAGGCAAGATCAGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
**
4386559 GCTTTGTTTTCAATCTGCTTC
66 GCTTTGTTTTTGATCTGCTTC
** *
4386580 GCTGTTAACGCAGGAAGGCAAGATCTATTTCTTTAACCAGCTCCACTGCAACTGATGGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
* *
4386645 GCTTTGTTTTCGATCTGCTCC
66 GCTTTGTTTTTGATCTGCTTC
*
4386666 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGTTCCACTGCAACCGATGGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
* *
4386731 GCTTTGTTTTCGATTTGCTTC
66 GCTTTGTTTTTGATCTGCTTC
*
4386752 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATCGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
*
4386817 GCTTTGTTTTTGATCTACTTC
66 GCTTTGTTTTTGATCTGCTTC
* *
4386838 GCTGTTAACGCAGGAAGGCAAGATCAGCTTCTTTAACCAGCTCCACTGCAACCGATCGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
*
4386903 GCTTTGTTTTTGATCTACTTC
66 GCTTTGTTTTTGATCTGCTTC
* *
4386924 GCTGTTAACGCAGGAAGGCAAGATCAGCTTCTTTAACCAGCTCCACTGCAACCGATCGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
*
4386989 GCTTTGTTTTTGATCTACTTC
66 GCTTTGTTTTTGATCTGCTTC
4387010 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
* *
4387075 GCTTTGTTTTCGATCTGTTTC
66 GCTTTGTTTTTGATCTGCTTC
* * *
4387096 GCTGTTAACGC-GGAAGGCAAGATCTGTTTCTTTAACTAGCTCCACTGCAACCGATGGAGGAAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
*
4387160 GCTTTGTTTTCGATCTGCTTC
66 GCTTTGTTTTTGATCTGCTTC
4387181 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
1 GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
* *
4387246 GCTTTATTTTTAATCT
66 GCTTTGTTTTTGATCT
4387262 TCACTGATCT
Statistics
Matches: 1219, Mismatches: 64, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
85 81 0.07
86 1138 0.93
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (86 bp):
GCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAG
GCTTTGTTTTTGATCTGCTTC
Found at i:4388485 original size:7 final size:7
Alignment explanation
Indices: 4388473--4388512 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
4388463 TTAGCCTCTC
4388473 CATTTTT
1 CATTTTT
4388480 CA-TTTT
1 CATTTTT
4388486 CATTTTT
1 CATTTTT
4388493 CATTTTT
1 CATTTTT
*
4388500 CA-TTCT
1 CATTTTT
4388506 CATTTTT
1 CATTTTT
4388513 TTTTCTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 11 0.38
7 18 0.62
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (7 bp):
CATTTTT
Found at i:4388491 original size:13 final size:14
Alignment explanation
Indices: 4388473--4388512 Score: 57
Period size: 13 Copynumber: 3.0 Consensus size: 14
4388463 TTAGCCTCTC
4388473 CATTTTTCA-TTTT
1 CATTTTTCATTTTT
4388486 CATTTTTCATTTTT
1 CATTTTTCATTTTT
*
4388500 CA-TTCTCATTTTT
1 CATTTTTCATTTTT
4388513 TTTTCTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 19 0.76
14 6 0.24
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (14 bp):
CATTTTTCATTTTT
Found at i:4388496 original size:20 final size:20
Alignment explanation
Indices: 4388473--4388512 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
4388463 TTAGCCTCTC
*
4388473 CATTTTTCATTTTCATTTTT
1 CATTTTTCATTCTCATTTTT
4388493 CATTTTTCATTCTCATTTTT
1 CATTTTTCATTCTCATTTTT
4388513 TTTTCTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (20 bp):
CATTTTTCATTCTCATTTTT
Found at i:4393296 original size:111 final size:112
Alignment explanation
Indices: 4392684--4393332 Score: 965
Period size: 112 Copynumber: 5.9 Consensus size: 112
4392674 ATATTTGGCT
** * * * ** * **
4392684 ATTTGGTCAAATG-GAAAAATCGAAACCCAGCGCATTAGGGCACATTTCCTTAAATTT-CCAAAC
1 ATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
* * ** * * **
4392747 GCAAAATATTATCTTACTTCG-AAAT-TTTTAAAAGGATATTTAGTC
66 ACAAAACATTGCCTTATTTTGAAAATATTTTAAAAGGATATTTAACC
4392792 ATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
1 ATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
4392857 ACAAAACATTGCCTTATTTTGAAAATATTTTAAAAGGATATTTAACC
66 ACAAAACATTGCCTTATTTTGAAAATATTTTAAAAGGATATTTAACC
4392904 ATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
1 ATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
4392969 ACAAAACATTGCCTTATTTTGAAAATATTTTAAAAGGATATTTAACC
66 ACAAAACATTGCCTTATTTTGAAAATATTTTAAAAGGATATTTAACC
4393016 ATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
1 ATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
4393081 ACAAAACATTGCCTTATTTTGAAAATATTTTAAAAGGATATTTAACC
66 ACAAAACATTGCCTTATTTTGAAAATATTTTAAAAGGATATTTAACC
*
4393128 ATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCAAATTTCCCAAAC
1 ATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
*
4393193 GCAAAACATTGCCTTATTTT-ACAAAT-TTTTAAAAGGATA-TTAAGCC
66 ACAAAACATTGCCTTATTTTGA-AAATATTTTAAAAGGATATTTAA-CC
* * *
4393239 ATTTGGTTGAACGAGAAAAATCGACACCCACCACCTTAGGGCACGTTTTCTCGAATTT-CCAAAC
1 ATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
* * * * *
4393303 GCTAAATATTGCCTCATTTAGAAAA-ATTTT
66 ACAAAACATTGCCTTATTTTGAAAATATTTT
4393333 CTTTTTTGAA
Statistics
Matches: 505, Mismatches: 28, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
108 11 0.02
109 36 0.07
110 54 0.11
111 75 0.15
112 329 0.65
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.31
Consensus pattern (112 bp):
ATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
ACAAAACATTGCCTTATTTTGAAAATATTTTAAAAGGATATTTAACC
Found at i:4396308 original size:24 final size:24
Alignment explanation
Indices: 4396280--4396331 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
4396270 TTAGTAAGTC
* *
4396280 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
4396304 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
4396328 AAAT
1 AAAT
4396332 CTTCTGGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:4398055 original size:24 final size:24
Alignment explanation
Indices: 4398015--4398072 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
4398005 ATATGGAAAG
* *
4398015 AAAT-AAAAATATTTTATATTAAT
1 AAATAAAAAATATATTATACTAAT
*
4398038 AAATAAAAAATATATTATGCTAAT
1 AAATAAAAAATATATTATACTAAT
*
4398062 AAATAATAAAT
1 AAATAAAAAAT
4398073 TTTCTAGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 4 0.13
24 26 0.87
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (24 bp):
AAATAAAAAATATATTATACTAAT
Found at i:4398541 original size:42 final size:42
Alignment explanation
Indices: 4398447--4398529 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
4398437 AAGCTCGAGC
** *
4398447 TCAAGTTCGA-TCTTGAGTATGAAAATTGATAAACAAGTTTAA
1 TCAAGTTCGAGT-TTGAGTACAAAAATTGATAAACAAGCTTAA
*
4398489 TCAAGTTCGAGTTTGAGTACAAAAATTGATAAATAAGCTTA
1 TCAAGTTCGAGTTTGAGTACAAAAATTGATAAACAAGCTTA
4398530 TTTGAATTCG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 35 0.97
43 1 0.03
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.33
Consensus pattern (42 bp):
TCAAGTTCGAGTTTGAGTACAAAAATTGATAAACAAGCTTAA
Found at i:4406492 original size:24 final size:23
Alignment explanation
Indices: 4406465--4406522 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 23
4406455 AAAGAGAAAT
*
4406465 GTATGTATTTTTGAAATATTAATG
1 GTATATATTTTTGAAA-ATTAATG
*
4406489 GTATATTTTTTTTGAAAATTAATG
1 GTATA-TATTTTTGAAAATTAATG
*
4406513 CTATATATTT
1 GTATATATTT
4406523 AATGTACTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 4 0.14
24 15 0.52
25 10 0.34
ACGTcount: A:0.33, C:0.02, G:0.12, T:0.53
Consensus pattern (23 bp):
GTATATATTTTTGAAAATTAATG
Found at i:4422376 original size:18 final size:18
Alignment explanation
Indices: 4422328--4422396 Score: 77
Period size: 18 Copynumber: 3.8 Consensus size: 18
4422318 CCTAACTACT
* *
4422328 GTATACGTGAACAGTATC
1 GTATACGTGAATAGTGTC
*
4422346 GTATATGTGAATAGTGTC
1 GTATACGTGAATAGTGTC
*
4422364 GTATACGTAAATAGTG-C
1 GTATACGTGAATAGTGTC
*
4422381 TGTATACATGAATAGT
1 -GTATACGTGAATAGT
4422397 ACCGTAAACG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
17 1 0.02
18 42 0.98
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (18 bp):
GTATACGTGAATAGTGTC
Found at i:4426280 original size:3 final size:3
Alignment explanation
Indices: 4426274--4426324 Score: 70
Period size: 3 Copynumber: 17.7 Consensus size: 3
4426264 AAAAGAGAGA
* *
4426274 AAG AAG AAG -AG GAG AAG GAG AAG AAG AAG AAG -AG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
4426320 AAG AA
1 AAG AA
4426325 AGTTTATAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
2 4 0.09
3 39 0.91
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:4426299 original size:20 final size:20
Alignment explanation
Indices: 4426274--4426324 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
4426264 AAAAGAGAGA
* *
4426274 AAGAAGAAGAGGAGAAGGAG
1 AAGAAGAAGAAGAGAAGAAG
4426294 AAGAAGAAGAAGAGAAGAAG
1 AAGAAGAAGAAGAGAAGAAG
4426314 AAGAAGAAGAA
1 AAGAAGAAGAA
4426325 AGTTTATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (20 bp):
AAGAAGAAGAAGAGAAGAAG
Found at i:4426315 original size:17 final size:17
Alignment explanation
Indices: 4426266--4426323 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 17
4426256 AGAAAAAAAA
4426266 AAGAGAGAA-AGAAGAAG
1 AAGA-AGAAGAGAAGAAG
*
4426283 -AGGAGAAG-G-AGAAG
1 AAGAAGAAGAGAAGAAG
4426297 AAGAAGAAGAGAAGAAG
1 AAGAAGAAGAGAAGAAG
4426314 AAGAAGAAGA
1 AAGAAGAAGA
4426324 AAGTTTATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
14 5 0.14
15 12 0.34
16 3 0.09
17 15 0.43
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (17 bp):
AAGAAGAAGAGAAGAAG
Done.