Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 175 of 322
Found at i:57276776 original size:48 final size:48
Alignment explanation
Indices: 57276702--57276884 Score: 142
Period size: 48 Copynumber: 3.9 Consensus size: 48
57276692 GGATATATTA
* * * * *
57276702 CCGATACCATATCTCAGGCATGGTCTTGCACTAGCACTCATCTTTGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTTTGTG
* * * *
57276750 CCGATGCCATGTCCCAGACATGGTCTTACATTGGCTA-TCATAGTATG-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGC-ACTCAT-CTTTGTG
* * * * *
57276798 CTGAT-ACATGTCCCAGACAT-GTCTTACACTAGCCCTCGTC-TGGATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTTTG-TG
* * * *
57276844 CCGATGCTATGTCTCAGACATGGTCTTACACTGGCTCTCAT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCAT
57276885 AATATGGTCG
Statistics
Matches: 103, Mismatches: 25, Indels: 14
0.73 0.18 0.10
Matches are distributed among these distances:
44 1 0.01
46 19 0.18
47 26 0.25
48 53 0.51
49 4 0.04
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.30
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTTTGTG
Found at i:57276885 original size:94 final size:94
Alignment explanation
Indices: 57276748--57276921 Score: 262
Period size: 94 Copynumber: 1.9 Consensus size: 94
57276738 CTCATCTTTG
* *
57276748 TGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTATCATAGTATGG-CTGATA-CATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATATGGTC-GA-AGCATGTCC
57276811 CAGACATGTCTTACACTAGCCCTCGTCTGGA
64 CAGACATGTCTTACACTAGCCCTCGTCTGGA
* * * *
57276842 TGCCGATGCTATGTCTCAGACATGGTCTTACACTGGCTCTCATAATATGGTCGAAGCATGTCCTA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATATGGTCGAAGCATGTCCCA
57276907 GACATGTCTTACACT
66 GACATGTCTTACACT
57276922 GGCGCACAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
93 1 0.01
94 70 0.97
95 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (94 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATATGGTCGAAGCATGTCCCA
GACATGTCTTACACTAGCCCTCGTCTGGA
Found at i:57276903 original size:47 final size:45
Alignment explanation
Indices: 57276757--57276924 Score: 151
Period size: 47 Copynumber: 3.6 Consensus size: 45
57276747 GTGCCGATGC
* * *
57276757 CATGTCCCAGACATGGTCTTACATTGGCTATCATAGTATGGCTGATA-
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATATGGC-GA-AG
* * * * * *
57276804 CATGTCCCAGACATGTCTTACACTAGCCCTCGT-CTGGATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATAAT--ATGGCGAAG
*
57276850 CTATGTCTCAGACATGGTCTTACACTGGCTCTCATAATATGGTCGAAG
1 C-ATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATATGG-CGAAG
*
57276898 CATGTCCTAGACATGTCTTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
57276925 GCACAAATCA
Statistics
Matches: 97, Mismatches: 17, Indels: 15
0.75 0.13 0.12
Matches are distributed among these distances:
45 1 0.01
46 30 0.31
47 44 0.45
48 21 0.22
49 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATAATATGGCGAAG
Found at i:57278774 original size:35 final size:35
Alignment explanation
Indices: 57278727--57278797 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 35
57278717 TATCTATAAC
*
57278727 TGTATCTACATCTGAAATGGGCTCAGG-CTCGAATA
1 TGTATCTACATCTGAAATGGGCCCAGGCCT-GAATA
* * *
57278762 TGTATCTGCATCTTACATGGGCCCAGGCCTGAATA
1 TGTATCTACATCTGAAATGGGCCCAGGCCTGAATA
57278797 T
1 T
57278798 TAATCTATCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 29 0.94
36 2 0.06
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (35 bp):
TGTATCTACATCTGAAATGGGCCCAGGCCTGAATA
Found at i:57284198 original size:14 final size:14
Alignment explanation
Indices: 57284179--57284205 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
57284169 AAACCAAAAT
57284179 AAAACAAAAATAAA
1 AAAACAAAAATAAA
57284193 AAAACAAAAATAA
1 AAAACAAAAATAA
57284206 TTAGGTCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.85, C:0.07, G:0.00, T:0.07
Consensus pattern (14 bp):
AAAACAAAAATAAA
Found at i:57292866 original size:39 final size:39
Alignment explanation
Indices: 57292782--57293094 Score: 425
Period size: 39 Copynumber: 8.0 Consensus size: 39
57292772 CAAATCCAAT
* * * *
57292782 CACCACCACAAA-GCATGCGGGACTTTAAGCCCGAATATAA
1 CACCAGCACAAATGCCTTCGGGAC-TT-AGCCCGGATATAA
* * *
57292822 TACCAGCACAAA-GCCTACGGGACTTTAGCCCGGATCTAA
1 CACCAGCACAAATGCCTTCGGGAC-TTAGCCCGGATATAA
* *
57292861 CACCAGCACAAATACCTTCGGGGCTTAGCCCGGATATAA
1 CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
*
57292900 CACCAGCACGAATGCCTTCGAGG-CTTAGCCCGGATATAA
1 CACCAGCACAAATGCCTTCG-GGACTTAGCCCGGATATAA
*
57292939 CACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAA
1 CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
57292978 CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
* **
57293017 CACCAGCACGAATGCCTTTAGGACTTAGCCCGGATATAA
1 CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
* *
57293056 CACCAGCACAAATGCCTTCGAGCCTTAGCCCGGATATAA
1 CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
57293095 TTCTCCATTA
Statistics
Matches: 247, Mismatches: 23, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
38 2 0.01
39 213 0.86
40 32 0.13
ACGTcount: A:0.31, C:0.31, G:0.20, T:0.18
Consensus pattern (39 bp):
CACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
Found at i:57296078 original size:27 final size:27
Alignment explanation
Indices: 57296045--57296203 Score: 173
Period size: 27 Copynumber: 5.9 Consensus size: 27
57296035 CTGCCAGAAT
* *
57296045 AGATAATGTGACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
*
57296072 AAATAATCGTGGCAGAGCCACCAGA-AC
1 AGATAAT-GTGGCAGAGCCACCAGATAC
*
57296099 AGATATATGTGGCAGAGCCGCCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
* *
57296126 AGATAATCATGGCATAGCCACCAGA-AC
1 AGATAAT-GTGGCAGAGCCACCAGATAC
*
57296153 AGATATATATGGCAGAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
*
57296180 AGATAATTGTGGCATAGCCACCAG
1 AGATAA-TGTGGCAGAGCCACCAG
57296204 GACGCTTCCT
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
26 3 0.03
27 91 0.81
28 19 0.17
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:57296103 original size:54 final size:54
Alignment explanation
Indices: 57296038--57296203 Score: 235
Period size: 54 Copynumber: 3.1 Consensus size: 54
57296028 AGCATGGCTG
* * * * *
57296038 CCAGAATAGATA-ATGTGACAGAGTCACCAGATACAAATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTGGCATAGCCA
* *
57296092 CCAGAACAGATATATGTGGCAGAGCCGCCAGATCAGATAATCATGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
* *
57296146 CCAGAACAGATATATATGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
57296200 CCAG
1 CCAG
57296204 GACGCTTCCT
Statistics
Matches: 100, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 83 0.83
55 17 0.17
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
Found at i:57297782 original size:26 final size:26
Alignment explanation
Indices: 57297746--57297881 Score: 254
Period size: 26 Copynumber: 5.2 Consensus size: 26
57297736 CATGAAATTC
*
57297746 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
57297772 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
57297798 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
57297824 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
57297850 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
57297876 TTATCA
1 TTATCA
57297882 ATTTGTATCA
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
26 109 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.32
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:57299472 original size:59 final size:58
Alignment explanation
Indices: 57299378--57299494 Score: 180
Period size: 59 Copynumber: 2.0 Consensus size: 58
57299368 CTTTCACTTG
57299378 CTGGCATGTCAGACATTTCCCTACAAACTCCGTTACTTCTCGTTTAAGTCCAGGCCAC
1 CTGGCATGTCAGACATTTCCCTACAAACTCCGTTACTTCTCGTTTAAGTCCAGGCCAC
* * ** *
57299436 CNTGGCATGTCAGACATTTCTCTATAATTTCTGTTACTTCTCGTTTAAGTCCAGGCCAC
1 C-TGGCATGTCAGACATTTCCCTACAAACTCCGTTACTTCTCGTTTAAGTCCAGGCCAC
57299495 TAGTACAATT
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 1 0.02
59 52 0.98
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.33
Consensus pattern (58 bp):
CTGGCATGTCAGACATTTCCCTACAAACTCCGTTACTTCTCGTTTAAGTCCAGGCCAC
Found at i:57302593 original size:80 final size:80
Alignment explanation
Indices: 57302460--57302615 Score: 294
Period size: 80 Copynumber: 1.9 Consensus size: 80
57302450 ACTTCAAACT
57302460 TAAATAAAAGGATGTCCAGTTCACCAGAAGAAAATCAAACTTTTAGAACGGGTGGCCACTCCGAA
1 TAAATAAAAGGATGTCCAGTTCACCAGAAGAAAATCAAACTTTTAGAACGGGTGGCCACTCCGAA
*
57302525 TTCCCTCACAGCTCG
66 TTCCCTAACAGCTCG
*
57302540 TAAATAAAATGATGTCCAGTTCACCAGAAGAAAATCAAACTTTTAGAACGGGTGGCCACTCCGAA
1 TAAATAAAAGGATGTCCAGTTCACCAGAAGAAAATCAAACTTTTAGAACGGGTGGCCACTCCGAA
57302605 TTCCCTAACAG
66 TTCCCTAACAG
57302616 TTCCAAGCCC
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 74 1.00
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.22
Consensus pattern (80 bp):
TAAATAAAAGGATGTCCAGTTCACCAGAAGAAAATCAAACTTTTAGAACGGGTGGCCACTCCGAA
TTCCCTAACAGCTCG
Found at i:57302924 original size:73 final size:73
Alignment explanation
Indices: 57302839--57302981 Score: 232
Period size: 73 Copynumber: 2.0 Consensus size: 73
57302829 ATAACACCCC
* * *
57302839 CGTACCAGCCTTACACCATGTGAGGAGACTACTCGACCCACCCAACCGCTACACACTACAGAAAT
1 CGTACCAACCTTACACCATGTGAGGAGACAACTCGACCCACCCAACCGCTACACACCACAGAAAT
57302904 TGCAGCGA
66 TGCAGCGA
* * *
57302912 CGTACCAACCTTACACCGTGTGGGGAGACAACTCGACCCACCCAACCGCTACACACCACAGAATT
1 CGTACCAACCTTACACCATGTGAGGAGACAACTCGACCCACCCAACCGCTACACACCACAGAAAT
57302977 TGCAG
66 TGCAG
57302982 TATGGCTGCC
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 64 1.00
ACGTcount: A:0.31, C:0.36, G:0.18, T:0.15
Consensus pattern (73 bp):
CGTACCAACCTTACACCATGTGAGGAGACAACTCGACCCACCCAACCGCTACACACCACAGAAAT
TGCAGCGA
Found at i:57303045 original size:28 final size:27
Alignment explanation
Indices: 57302990--57303182 Score: 198
Period size: 27 Copynumber: 7.1 Consensus size: 27
57302980 AGTATGGCTG
* **
57302990 CCAGA-ACAGATAATGTGACAGATTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
57303016 CCAGATACAGATAATCGTGGCAGAGTCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
57303044 CCAGATACAGATAATCGTGGCAAAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
* *
57303072 CCAGA-ACAGATATATGTGTCAAAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
* *
57303099 CCAGAT-CAGATAATCATGGCATAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
57303126 CCAGA-ACAAATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
57303153 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
57303180 CCA
1 CCA
57303183 AGACGCTTCC
Statistics
Matches: 145, Mismatches: 13, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
26 8 0.06
27 92 0.63
28 45 0.31
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.18
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:57303125 original size:54 final size:54
Alignment explanation
Indices: 57303014--57303182 Score: 241
Period size: 54 Copynumber: 3.1 Consensus size: 54
57303004 GTGACAGATT
* *
57303014 CACCAGATACAGATA-ATCGTGGCAGAGTCACCAGATACAGATAATCGTGGCAAAGC
1 CACCAGA-ACAGATATAT-GTGGCAGAGCCACCAGAT-CAGATAATCGTGGCATAGC
* * *
57303070 CACCAGAACAGATATATGTGTCAAAGCCACCAGATCAGATAATCATGGCATAGC
1 CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGC
* *
57303124 CACCAGAACAAATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGC
1 CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGC
57303178 CACCA
1 CACCA
57303183 AGACGCTTCC
Statistics
Matches: 102, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
54 71 0.70
55 22 0.22
56 9 0.09
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.17
Consensus pattern (54 bp):
CACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGC
Found at i:57303179 original size:81 final size:83
Alignment explanation
Indices: 57302990--57303182 Score: 225
Period size: 81 Copynumber: 2.4 Consensus size: 83
57302980 AGTATGGCTG
* * ** * * *
57302990 CCAGAACAGATA-ATGTGACAGATTCACCAGATACAGATAATCGTGGCAGAGTCACCAGATACAG
1 CCAGAACAGATATATGTGGCAAAGCCACCAGATACAGATAATCATGGCAGAGCCACCAGATACAA
57303054 ATAATCGTGGCAAAGCCA
66 ATAATCGTGGCAAAGCCA
* *
57303072 CCAGAACAGATATATGTGTCAAAGCCACCAGAT-CAGATAATCATGGCATAGCCACCAGA-ACAA
1 CCAGAACAGATATATGTGGCAAAGCCACCAGATACAGATAATCATGGCAGAGCCACCAGATACAA
*
57303135 ATATAT-GTGGCAGAGCCA
66 ATA-ATCGTGGCAAAGCCA
* *
57303153 CCAGATCAGATA-ATTGTGGCATAGCCACCA
1 CCAGAACAGATATA-TGTGGCAAAGCCACCA
57303183 AGACGCTTCC
Statistics
Matches: 96, Mismatches: 12, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
80 1 0.01
81 42 0.44
82 37 0.39
83 16 0.17
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.18
Consensus pattern (83 bp):
CCAGAACAGATATATGTGGCAAAGCCACCAGATACAGATAATCATGGCAGAGCCACCAGATACAA
ATAATCGTGGCAAAGCCA
Found at i:57303217 original size:60 final size:60
Alignment explanation
Indices: 57303150--57303269 Score: 222
Period size: 60 Copynumber: 2.0 Consensus size: 60
57303140 TGTGGCAGAG
*
57303150 CCACCAGATCAGATAATTGTGGCATAGCCACCAAGACGCTTCCTCCATAATATACCCCAT
1 CCACCAGATCAGATAATTGTGGCATAGCCACCAAGACGCTTCCTCCATAATATAACCCAT
*
57303210 CCACCAGATCAGATAATTGTGGCATAGCCACCAGGACGCTTCCTCCATAATATAACCCAT
1 CCACCAGATCAGATAATTGTGGCATAGCCACCAAGACGCTTCCTCCATAATATAACCCAT
57303270 GTCCCCATGC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.32, C:0.33, G:0.14, T:0.22
Consensus pattern (60 bp):
CCACCAGATCAGATAATTGTGGCATAGCCACCAAGACGCTTCCTCCATAATATAACCCAT
Found at i:57303572 original size:94 final size:94
Alignment explanation
Indices: 57303411--57303598 Score: 331
Period size: 94 Copynumber: 2.0 Consensus size: 94
57303401 CATAGGGGTA
*
57303411 TTATAGTAATTTAGCTACTTTTAGGGTTTTTATGCATATACTAACTATTTACGTACTATCAGAAC
1 TTATAGTAATTTAGCTACTTTTAGGGTTTTCATGCATATACTAACTATTTACGTACTATCAGAAC
*
57303476 ACTTACCGCGCATACTTACCGAATTGGGC
66 ACTTACCGCGCATACTTACCAAATTGGGC
*
57303505 TTATAGTAATTTAGCTACTTTTAGGGTTTTCATGCATATCCTAACTATTTACGTACTATCAGAAC
1 TTATAGTAATTTAGCTACTTTTAGGGTTTTCATGCATATACTAACTATTTACGTACTATCAGAAC
**
57303570 ACTTATTGCGCATACTTACCAAATTGGGC
66 ACTTACCGCGCATACTTACCAAATTGGGC
57303599 CCATTGGCCC
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 89 1.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (94 bp):
TTATAGTAATTTAGCTACTTTTAGGGTTTTCATGCATATACTAACTATTTACGTACTATCAGAAC
ACTTACCGCGCATACTTACCAAATTGGGC
Found at i:57304047 original size:73 final size:73
Alignment explanation
Indices: 57303923--57304069 Score: 267
Period size: 73 Copynumber: 2.0 Consensus size: 73
57303913 ATTAACCCCT
*
57303923 TACAATATTCGGCCAACCACACCTACAGATCATAGTAAGCTTATAAGAAATCAATAAGCAACTCA
1 TACAATATTCGGCCAACCACACCTACAAATCATAGTAAGCTTATAAGAAATCAATAAGCAACTCA
57303988 TTAACAAA
66 TTAACAAA
* *
57303996 TACACTATTCGGCCAACCACACCTACAAATCATAGTAGGCTTATAAGAAATCAATAAGCAACTCA
1 TACAATATTCGGCCAACCACACCTACAAATCATAGTAAGCTTATAAGAAATCAATAAGCAACTCA
57304061 TTAACAAA
66 TTAACAAA
57304069 T
1 T
57304070 TTTTGTCAAT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.44, C:0.24, G:0.10, T:0.22
Consensus pattern (73 bp):
TACAATATTCGGCCAACCACACCTACAAATCATAGTAAGCTTATAAGAAATCAATAAGCAACTCA
TTAACAAA
Found at i:57309242 original size:43 final size:43
Alignment explanation
Indices: 57309181--57309265 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
57309171 AAACGAGATT
57309181 GAGGAATAAATTCCTTTGAATTAGCTTCTAGCAAAGCTAAGTC
1 GAGGAATAAATTCCTTTGAATTAGCTTCTAGCAAAGCTAAGTC
57309224 GAGGAATAAATTCCTTTGAATTAGCTTCTAGCAAAGCTAAGT
1 GAGGAATAAATTCCTTTGAATTAGCTTCTAGCAAAGCTAAGT
57309266 ATTTTTCTCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (43 bp):
GAGGAATAAATTCCTTTGAATTAGCTTCTAGCAAAGCTAAGTC
Found at i:57312391 original size:48 final size:48
Alignment explanation
Indices: 57312335--57312492 Score: 235
Period size: 48 Copynumber: 3.3 Consensus size: 48
57312325 CACAAAGTAA
* *
57312335 GATGCCAATGCCATATCCCGGATATGGTCTTAAATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
57312383 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* * * * *
57312431 AATGCCAATGCCATGTCCCAGACATGGTATTACATGGGATCACATAAC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
**
57312479 GATGGAAATGCCAT
1 GATGCCAATGCCAT
57312493 GTCGTAGACA
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 100 1.00
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.25
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
Found at i:57312493 original size:48 final size:48
Alignment explanation
Indices: 57312335--57312514 Score: 234
Period size: 48 Copynumber: 3.8 Consensus size: 48
57312325 CACAAAGTAA
* * *
57312335 GATGCCAATGCCATATCCCGGATATGGTCTTAAATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
*
57312383 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* * * *
57312431 AATGCCAATGCCATGTCCCAGACATGGTATTACATGGGATCACATAAC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
** * ** *
57312479 GATGGAAATGCCATGTCGTAGACATGGTTTTACATG
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATG
57312515 ACGTCACATA
Statistics
Matches: 119, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 119 1.00
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:57321543 original size:46 final size:44
Alignment explanation
Indices: 57321423--57321644 Score: 157
Period size: 46 Copynumber: 4.9 Consensus size: 44
57321413 TGGGTTATTG
* * *
57321423 TGAG-CTAGTGTAAGACATGTCTGAGACATGCATAGGCCAT-ATTA
1 TGAGTCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-TGA-GA
* * *
57321467 TGAGAGCTTGTGTAAGACCATGTGTGGGACATGGCATCGGCGCTGAGA
1 TGAG-TCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTGAGA
* **
57321515 TGAGTCTAGTATAAGACATGTCTGGGACATGCATTAGCCTCGAGA
1 TGAGTCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-GAGA
* *
57321560 TGTAAG-CTAGTGTAAGACATGTCTGAGACATTCATCGG-CTACGAGA
1 TG--AGTCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT--GAGA
* * * *
57321606 CGTGTC-AGTGTAAGTCCGTGTCTGGGACATGGCATCGGC
1 TGAGTCTAGTGTAAG-ACATGTCTGGGACAT-GCATCGGC
57321645 AAAGATGTGC
Statistics
Matches: 142, Mismatches: 22, Indels: 25
0.75 0.12 0.13
Matches are distributed among these distances:
44 15 0.11
45 27 0.19
46 62 0.44
47 23 0.16
48 13 0.09
49 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (44 bp):
TGAGTCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTGAGA
Found at i:57323593 original size:46 final size:45
Alignment explanation
Indices: 57323499--57323679 Score: 143
Period size: 46 Copynumber: 3.9 Consensus size: 45
57323489 CACTGACACA
* * * *
57323499 TCTCGCAGC-CGATGCATGTCCCATACATGTCTTACATTGGCTTACG
1 TCTCG-AGCTCGATGCATGTCCCAGACATGTCTTACACTAGCCT-CG
* *
57323545 TCTCGAGCTCAATGCATGTCCCAGACATGTCTTACACTAGCAGTCG
1 TCTCGAGCTCGATGCATGTCCCAGACATGTCTTACACTAGC-CTCG
* * * *
57323591 TCTCGATG-TCGATGCCACGTCCCAAACATGGTCTTACACTGGCTCTCA
1 TCTCGA-GCTCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-CTCG
* * * *
57323639 TATTGTGGC-CGATGCATGTCCTAGACATGTCTTACACTAGC
1 TCTCG-AGCTCGATGCATGTCCCAGACATGTCTTACACTAGC
57323680 TCACACGAGT
Statistics
Matches: 109, Mismatches: 19, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
45 3 0.03
46 58 0.53
47 25 0.23
48 23 0.21
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.29
Consensus pattern (45 bp):
TCTCGAGCTCGATGCATGTCCCAGACATGTCTTACACTAGCCTCG
Found at i:57323625 original size:94 final size:92
Alignment explanation
Indices: 57323508--57323679 Score: 213
Period size: 94 Copynumber: 1.8 Consensus size: 92
57323498 ATCTCGCAGC
* * * * *
57323508 CGATGCATGTCCCATACATGTCTTACATTGGCT-TACGTCTCG-AGCTCAATGCATGTCCCAGAC
1 CGATGCACGTCCCAAACATGTCTTACACTGGCTCT-CATATCGTAGC-CAATGCATGTCCCAGAC
57323571 ATGTCTTACACTAGCAGTCGTCTCGATGT
64 ATGTCTTACACTAGCAGTCGTCTCGATGT
* * * *
57323600 CGATGCCACGTCCCAAACATGGTCTTACACTGGCTCTCATATTGTGGCCGATGCATGTCCTAGAC
1 CGATG-CACGTCCCAAACAT-GTCTTACACTGGCTCTCATATCGTAGCCAATGCATGTCCCAGAC
57323665 ATGTCTTACACTAGC
64 ATGTCTTACACTAGC
57323680 TCACACGAGT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
92 5 0.07
93 12 0.18
94 47 0.70
95 3 0.04
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (92 bp):
CGATGCACGTCCCAAACATGTCTTACACTGGCTCTCATATCGTAGCCAATGCATGTCCCAGACAT
GTCTTACACTAGCAGTCGTCTCGATGT
Found at i:57325937 original size:17 final size:18
Alignment explanation
Indices: 57325910--57325943 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
57325900 CACACAATAA
*
57325910 ACCCAAAATAATCCCAAC
1 ACCCAAAATAAGCCCAAC
57325928 ACCC-AAATAAGCCCAA
1 ACCCAAAATAAGCCCAA
57325944 GAGGAGAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.38, G:0.03, T:0.09
Consensus pattern (18 bp):
ACCCAAAATAAGCCCAAC
Found at i:57327840 original size:28 final size:29
Alignment explanation
Indices: 57327809--57327867 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 29
57327799 AAAGTGATTT
*
57327809 TTGACAAAAATGTAAAT-TAGGGATTAAA
1 TTGACAAAAATGTAAATAGAGGGATTAAA
* *
57327837 TTGAGAAAAATGTAAATAGAGGGGTTAAA
1 TTGACAAAAATGTAAATAGAGGGATTAAA
57327866 TT
1 TT
57327868 ATGAAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 16 0.59
29 11 0.41
ACGTcount: A:0.47, C:0.02, G:0.22, T:0.29
Consensus pattern (29 bp):
TTGACAAAAATGTAAATAGAGGGATTAAA
Found at i:57328484 original size:43 final size:43
Alignment explanation
Indices: 57328405--57328486 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
57328395 ATTGTGTTTA
* * *
57328405 CGTGTAAGACCATGTCTGCGACATTGGTATCGTTATATGATTT
1 CGTGTAAGACCACGTCTGCGACATTGGCATCATTATATGATTT
* **
57328448 CGTGTAAGACCACGTCTGGGATGTTGGCATCATTATATG
1 CGTGTAAGACCACGTCTGCGACATTGGCATCATTATATG
57328487 TTAACATGTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGCGACATTGGCATCATTATATGATTT
Found at i:57336631 original size:5 final size:4
Alignment explanation
Indices: 57336604--57336644 Score: 50
Period size: 4 Copynumber: 10.2 Consensus size: 4
57336594 TTGCTTGTAC
57336604 ATAA ATAA ATAA ATAA ATAAA ATGAA AT-- ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA AT-AA AT-AA ATAA ATAA ATAA ATAA A
57336645 GGCTCAAGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
2 2 0.06
4 23 0.70
5 8 0.24
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:57350550 original size:84 final size:84
Alignment explanation
Indices: 57350409--57350571 Score: 317
Period size: 84 Copynumber: 1.9 Consensus size: 84
57350399 TGAGTACTAA
57350409 TATTTACTTTCTTTTTATTATCTAGCCTAAAAATTAAGAGGTTTGGTTATCTAAACTAATTACTA
1 TATTTACTTTCTTTTTATTATCTAGCCTAAAAATTAAGAGGTTTGGTTATCTAAACTAATTACTA
57350474 ACTAAGAATGCACAGCTAG
66 ACTAAGAATGCACAGCTAG
*
57350493 TATTTACTTTCTTTTTATTATCTAGCCTAAAAATTAAGAGGTTTGGTTTTCTAAACTAATTACTA
1 TATTTACTTTCTTTTTATTATCTAGCCTAAAAATTAAGAGGTTTGGTTATCTAAACTAATTACTA
57350558 ACTAAGAATGCACA
66 ACTAAGAATGCACA
57350572 AAAAGAAAAT
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 78 1.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.40
Consensus pattern (84 bp):
TATTTACTTTCTTTTTATTATCTAGCCTAAAAATTAAGAGGTTTGGTTATCTAAACTAATTACTA
ACTAAGAATGCACAGCTAG
Found at i:57351139 original size:93 final size:93
Alignment explanation
Indices: 57350979--57351155 Score: 318
Period size: 93 Copynumber: 1.9 Consensus size: 93
57350969 TAACTCGATC
* *
57350979 TATGGATTCCCTTATTAGGTTTCACCCTAATCCGACAAAATCTTATCACCCTATCTCTAAGCGTG
1 TATGGATTCCCTTATTAGGTTTCACCCTAATCCGAAAAAATCTTATCACCCTATCTCTAAGCATG
*
57351044 CAATCAACTCTGCTTAATTATGACAAAT
66 CAATCAACTCCGCTTAATTATGACAAAT
*
57351072 TATGGATTCCCTTATTAGGTTTCACCCTAATTCGAAAAAATCTTATCACCCTATCTCTAAGCATG
1 TATGGATTCCCTTATTAGGTTTCACCCTAATCCGAAAAAATCTTATCACCCTATCTCTAAGCATG
57351137 CAATCAACTCCGCTTAATT
66 CAATCAACTCCGCTTAATT
57351156 GTGAAAAACT
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 80 1.00
ACGTcount: A:0.30, C:0.26, G:0.10, T:0.34
Consensus pattern (93 bp):
TATGGATTCCCTTATTAGGTTTCACCCTAATCCGAAAAAATCTTATCACCCTATCTCTAAGCATG
CAATCAACTCCGCTTAATTATGACAAAT
Found at i:57351285 original size:53 final size:54
Alignment explanation
Indices: 57351217--57351326 Score: 186
Period size: 53 Copynumber: 2.1 Consensus size: 54
57351207 GACTTGAATC
* * *
57351217 AATATCCTGGAATATCAAAACAAGAATTAATAACACATAATTAATAATAAGTCA
1 AATATCCTGGAATATCAAAACAAGAATTAAGAACACATAATTAAGAACAAGTCA
57351271 AATA-CCTGGAATATCAAAACAAGAATTAAGAACACATAATTAAGAACAAGTCA
1 AATATCCTGGAATATCAAAACAAGAATTAAGAACACATAATTAAGAACAAGTCA
57351324 AAT
1 AAT
57351327 GTTTATCATA
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
53 49 0.92
54 4 0.08
ACGTcount: A:0.55, C:0.14, G:0.09, T:0.23
Consensus pattern (54 bp):
AATATCCTGGAATATCAAAACAAGAATTAAGAACACATAATTAAGAACAAGTCA
Found at i:57351779 original size:227 final size:227
Alignment explanation
Indices: 57351368--57351820 Score: 723
Period size: 227 Copynumber: 2.0 Consensus size: 227
57351358 GATCCGTCTT
* * *
57351368 AGGTTTCATTCCCCTTAGGTATTTAGGGGGTTTAGTTCATACTTATGAAATAAAACATCTTAAAA
1 AGGTTTCATTCCCCTTAGGTATTTAGGGGGGTTAGTTCATACTTATGAAAGAAAACATCTCAAAA
*
57351433 GCATAAAGATAACAAAACATAAGAAAACCTGAAACTCCTGAAGGAACTTGAAGGGAGATCTTCAG
66 GCATAAAGATAACAAAACATAAGAAAACCTAAAACTCCTGAAGGAACTTGAAGGGAGATCTTCAG
* *
57351498 TCTTGATGATGAATCCAACTTCTAAGATGGATCAATCGTCTTTCCTTTAGTAATTCCTCGCTTCC
131 TCTTGATGATGAATCCAACTTCTAAGATGGATCAATCGGCTTTCCTTTAGTAATTCCTCGCTCCC
*
57351563 TACTCTCTGTCCCCCTCTAAGTGCATCCTCAG
196 TACACTCTGTCCCCCTCTAAGTGCATCCTCAG
57351595 AGGTTTCATTCCCCTTAGGTATTTAGGGGGGTTAGCTT-ATACTTATGAAAGAAAACATCTCAAA
1 AGGTTTCATTCCCCTTAGGTATTTAGGGGGGTTAG-TTCATACTTATGAAAGAAAACATCTCAAA
*
57351659 AGCATAAAGATAACAAAACATAAGAAAA-CTCAAAACTCCTGAAGGAACTTGAAGGGAGATCTTG
65 AGCATAAAGATAACAAAACATAAGAAAACCT-AAAACTCCTGAAGGAACTTGAAGGGAGATCTTC
* *** * * *
57351723 GGTCTTGATGATGAATCTGGCTTCTGAGATGGATCAATCGGCTTT-CTTTGAGTAATTGCTTGCT
129 AGTCTTGATGATGAATCCAACTTCTAAGATGGATCAATCGGCTTTCCTTT-AGTAATTCCTCGCT
57351787 CCCTACACTCTGTCCCCCTCTAAGTGCATCCTCA
193 CCCTACACTCTGTCCCCCTCTAAGTGCATCCTCA
57351821 AGTGTTTAAA
Statistics
Matches: 208, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
226 6 0.03
227 200 0.96
228 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (227 bp):
AGGTTTCATTCCCCTTAGGTATTTAGGGGGGTTAGTTCATACTTATGAAAGAAAACATCTCAAAA
GCATAAAGATAACAAAACATAAGAAAACCTAAAACTCCTGAAGGAACTTGAAGGGAGATCTTCAG
TCTTGATGATGAATCCAACTTCTAAGATGGATCAATCGGCTTTCCTTTAGTAATTCCTCGCTCCC
TACACTCTGTCCCCCTCTAAGTGCATCCTCAG
Found at i:57361484 original size:13 final size:13
Alignment explanation
Indices: 57361466--57361491 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
57361456 ATATTTTTAT
57361466 CCCATGCTTAGCA
1 CCCATGCTTAGCA
57361479 CCCATGCTTAGCA
1 CCCATGCTTAGCA
57361492 TATTTTTGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.38, G:0.15, T:0.23
Consensus pattern (13 bp):
CCCATGCTTAGCA
Found at i:57365483 original size:47 final size:48
Alignment explanation
Indices: 57365410--57365592 Score: 164
Period size: 47 Copynumber: 3.9 Consensus size: 48
57365400 AAGGTAAGGT
*
57365410 GCCGATGCCATGTCCTAGACACGGTCTTACATTGGCTCAT-ATCTCAA
1 GCCGATGCCATGTCCTAGACATGGTCTTACATTGGCTCATCATCTCAA
* * * * *
57365457 GTCGATGCCATGT-CTCAGACATGGTCTTATACTGACT-ATCATCTCGTA
1 GCCGATGCCATGTCCT-AGACATGGTCTTACATTGGCTCATCATCTC-AA
* * * * * * * *
57365505 GCCGATG-CATATCCCAGACAT-TTCTCACAGTAGC-CCTCGTCTCAA
1 GCCGATGCCATGTCCTAGACATGGTCTTACATTGGCTCATCATCTCAA
57365550 TGCCGATGCCATGTCCTAGACATGGTCTTACATTGGCTC-TCAT
1 -GCCGATGCCATGTCCTAGACATGGTCTTACATTGGCTCATCAT
57365593 AATGTGGCCG
Statistics
Matches: 102, Mismatches: 25, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
45 1 0.01
46 24 0.24
47 56 0.55
48 20 0.20
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.30
Consensus pattern (48 bp):
GCCGATGCCATGTCCTAGACATGGTCTTACATTGGCTCATCATCTCAA
Found at i:57391358 original size:21 final size:22
Alignment explanation
Indices: 57391332--57391372 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
57391322 CACTTGACAC
57391332 AGGGGCA-CACGCCCGTGTGGG
1 AGGGGCACCACGCCCGTGTGGG
*
57391353 AGGGGCACCACGTCCGTGTG
1 AGGGGCACCACGCCCGTGTG
57391373 AGCATTCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.15, C:0.29, G:0.44, T:0.12
Consensus pattern (22 bp):
AGGGGCACCACGCCCGTGTGGG
Found at i:57392891 original size:19 final size:19
Alignment explanation
Indices: 57392875--57392912 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
57392865 GGGTAAGCAT
57392875 TTACATGCTTAGTAAGCTC
1 TTACATGCTTAGTAAGCTC
57392894 TTACATGCTTAGTAAGCTC
1 TTACATGCTTAGTAAGCTC
57392913 AAATAGCCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (19 bp):
TTACATGCTTAGTAAGCTC
Found at i:57395512 original size:47 final size:47
Alignment explanation
Indices: 57395421--57395690 Score: 205
Period size: 47 Copynumber: 5.8 Consensus size: 47
57395411 AGGGTAAGGT
* * * *
57395421 GCCGATGTCATGTCCTAGACACGGTCTTACACTGGCTCAT-ATCTCAAA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCT-ATCATCTCGAA
* * * *
57395469 TCC-ATGCCATGTCCCAGACATGGTCTTATACTAACTATCATCTCGTA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTATCATCTCGAA
* * * *
57395516 GCCAATGCATGTCCCAGACAT-GTTTTACACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTAT-CATCTCGAA
* ** *
57395562 GCCGATGAATGTCCCAGACAT-GTCTTACACTAGCCCTCGTCTC-AA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTATCATCTCGAA
* * * * **
57395607 TGCCGATGCCATGTACCAGACATGGTCTTACACTGGCTTTCATAAT-GTG
1 -GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTATCAT-CTCGAA
* *
57395656 GCCGATACATGTCCCAGACAT-ATCTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCT
57395691 CACACATGAA
Statistics
Matches: 177, Mismatches: 36, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
45 2 0.01
46 73 0.41
47 75 0.42
48 26 0.15
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTATCATCTCGAA
Found at i:57395575 original size:46 final size:45
Alignment explanation
Indices: 57395477--57395686 Score: 165
Period size: 46 Copynumber: 4.5 Consensus size: 45
57395467 AATCCATGCC
* ** * *
57395477 ATGTCCCAGACATGGTCTTATACTAACTATCATCTCGTA-GCCAATGC
1 ATGTCCCAGACAT-GTCTTACACTGGCT-TCATCTCG-AGGCCGATGA
*
57395524 ATGTCCCAGACATGTTTTACACTGGCTTACATCTCGAGGCCGATGA
1 ATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGAGGCCGATGA
* * * * * *
57395570 ATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGATGCC
1 ATGTCCCAGACATGTCTTACACT-GGCTTCATCTCGAGGCCGATG-A
* * *
57395617 ATGTACCAGACATGGTCTTACACTGGCTTTCATAAT-GTGGCCGAT-A
1 ATGTCCCAGACAT-GTCTTACACTGGC-TTCAT-CTCGAGGCCGATGA
*
57395663 CATGTCCCAGACATATCTTACACT
1 -ATGTCCCAGACATGTCTTACACT
57395687 AGCTCACACA
Statistics
Matches: 131, Mismatches: 24, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
45 2 0.02
46 67 0.51
47 42 0.32
48 19 0.15
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (45 bp):
ATGTCCCAGACATGTCTTACACTGGCTTCATCTCGAGGCCGATGA
Found at i:57400213 original size:3 final size:3
Alignment explanation
Indices: 57400205--57400375 Score: 342
Period size: 3 Copynumber: 57.0 Consensus size: 3
57400195 TTTTAAAGCA
57400205 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
57400253 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
57400301 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
57400349 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
57400376 AGGGAGTGAT
Statistics
Matches: 168, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 168 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:57400723 original size:3 final size:3
Alignment explanation
Indices: 57400715--57400748 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
57400705 TGGATTTCTC
*
57400715 CCT CCT CCT CCT CCT CCT TCT CCT CCT CCT CCT C
1 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT C
57400749 ATTATTATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (3 bp):
CCT
Found at i:57401272 original size:7 final size:8
Alignment explanation
Indices: 57401250--57401274 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
57401240 TGATTTGAAT
57401250 TATAAAAA
1 TATAAAAA
57401258 TATAAAAA
1 TATAAAAA
57401266 TATAAAAA
1 TATAAAAA
57401274 T
1 T
57401275 GAAAAGATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (8 bp):
TATAAAAA
Found at i:57413026 original size:20 final size:20
Alignment explanation
Indices: 57413003--57413045 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
57412993 TAAATTGATG
57413003 CTCAAATTAAACAATTGTAT
1 CTCAAATTAAACAATTGTAT
57413023 CTCAAATTAAACAATTGTAT
1 CTCAAATTAAACAATTGTAT
57413043 CTC
1 CTC
57413046 TTGGTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.19, G:0.05, T:0.35
Consensus pattern (20 bp):
CTCAAATTAAACAATTGTAT
Found at i:57418560 original size:25 final size:25
Alignment explanation
Indices: 57418512--57418560 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
57418502 CCAAAATTCT
*
57418512 AAGGAAAATATTTTTTTGAACAATCC
1 AAGGAAAATATTTTATTG-ACAATCC
57418538 AAGGAAAATATTTTAATTG-CAAT
1 AAGGAAAATATTTT-ATTGACAAT
57418561 AGGATGGGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 4 0.19
26 14 0.67
27 3 0.14
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.35
Consensus pattern (25 bp):
AAGGAAAATATTTTATTGACAATCC
Found at i:57429001 original size:21 final size:21
Alignment explanation
Indices: 57428975--57429016 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
57428965 TGCTTGAGTA
*
57428975 TTTAAATGTTTAATGATAGAT
1 TTTAAAGGTTTAATGATAGAT
57428996 TTTAAAGGTTTAATGATAGAT
1 TTTAAAGGTTTAATGATAGAT
57429017 ATACAAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (21 bp):
TTTAAAGGTTTAATGATAGAT
Found at i:57429531 original size:34 final size:34
Alignment explanation
Indices: 57429488--57429559 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
57429478 TATGAATGCC
57429488 TTGATGATATGTTGTATTCGTTACCGAGCCTCGT
1 TTGATGATATGTTGTATTCGTTACCGAGCCTCGT
57429522 TTGATGATATGTTGTATTCGTTACCGAGCCTCGT
1 TTGATGATATGTTGTATTCGTTACCGAGCCTCGT
57429556 TTGA
1 TTGA
57429560 ACTATGTGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.18, C:0.17, G:0.24, T:0.42
Consensus pattern (34 bp):
TTGATGATATGTTGTATTCGTTACCGAGCCTCGT
Found at i:57429680 original size:23 final size:22
Alignment explanation
Indices: 57429644--57429732 Score: 72
Period size: 23 Copynumber: 3.8 Consensus size: 22
57429634 AGACTCACCA
*
57429644 CAGCTCGTAAGAGCTTACTGTTT
1 CAGCTCAT-AGAGCTTACTGTTT
* *
57429667 CAGCTCATTGGAGCTTACCGATTT
1 CAGCTCA-TAGAGCTTACTG-TTT
* *
57429691 -AGCTTGATAGAGCTTACTATTTT
1 CAGC-TCATAGAGCTTACT-GTTT
57429714 CAGCTCAATAGAGCTTACT
1 CAGCTC-ATAGAGCTTACT
57429733 ATTTATCAGC
Statistics
Matches: 52, Mismatches: 8, Indels: 11
0.73 0.11 0.15
Matches are distributed among these distances:
23 31 0.60
24 21 0.40
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (22 bp):
CAGCTCATAGAGCTTACTGTTT
Found at i:57429724 original size:24 final size:24
Alignment explanation
Indices: 57429653--57429745 Score: 93
Period size: 24 Copynumber: 3.9 Consensus size: 24
57429643 ACAGCTCGTA
* *
57429653 AGAGCTTACT-GTTTCAGCTCATT
1 AGAGCTTACTATTTTCAGCTCAAT
* * **
57429676 GGAGCTTACCGA-TTT-AGCTTGAT
1 AGAGCTTA-CTATTTTCAGCTCAAT
57429699 AGAGCTTACTATTTTCAGCTCAAT
1 AGAGCTTACTATTTTCAGCTCAAT
57429723 AGAGCTTACTATTTATCAGCTCA
1 AGAGCTTACTATTT-TCAGCTCA
57429746 GGAGGAGCTT
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
22 2 0.04
23 22 0.39
24 24 0.43
25 8 0.14
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (24 bp):
AGAGCTTACTATTTTCAGCTCAAT
Found at i:57434922 original size:40 final size:40
Alignment explanation
Indices: 57434858--57435163 Score: 459
Period size: 40 Copynumber: 7.6 Consensus size: 40
57434848 CCAGCATGAT
* * * *
57434858 TGCTCTTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTC-TTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * * *
57434899 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
57434939 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
57434979 TGCTCTTCGGGACTTAGCCCGGTTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
57435019 TGCTCTTCGGGACTTAGCCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
57435059 TGCTCTTCGGGACTTAGCCCGGTTACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
57435099 TGCTCTTCGGGACTTAGCCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
57435139 TGCTCTTTGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATA
57435164 TATATATAAC
Statistics
Matches: 240, Mismatches: 25, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
40 235 0.98
41 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:57436506 original size:37 final size:37
Alignment explanation
Indices: 57436442--57436550 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
57436432 AGCTCAGACG
* *
57436442 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
57436479 AAATCTCCACACGTAGTCATCGAGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
57436516 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
57436551 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:57436818 original size:47 final size:47
Alignment explanation
Indices: 57436756--57437181 Score: 663
Period size: 47 Copynumber: 9.1 Consensus size: 47
57436746 ACATATTTCG
* * *
57436756 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
* *
57436803 TATTGACCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
57436850 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
57436897 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
** * * * *
57436944 CATTGGCCATTCAACCTTATCACATATATGAATGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
*
57436991 TATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
** * * * *
57437038 CATTGGCCATTCAACCTTATCACATATATGAATGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
*
57437085 TATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
* *
57437132 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
57437179 CAT
1 CAT
57437182 AAAATCCTAA
Statistics
Matches: 342, Mismatches: 37, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 342 1.00
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
Found at i:57436854 original size:94 final size:94
Alignment explanation
Indices: 57436756--57437178 Score: 738
Period size: 94 Copynumber: 4.5 Consensus size: 94
57436746 ACATATTTCG
*
57436756 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCATATTGACCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCATATTGGCCATTCGGCCTT
57436821 ATCACACATATGCATGCTCACATTCATCA
66 ATCACACATATGCATGCTCACATTCATCA
* * * *
57436850 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCATATTGGCCATTCGGCCTT
57436915 ATCACACATATGCATGCTCACATTCATCA
66 ATCACACATATGCATGCTCACATTCATCA
** *
57436944 CATTGGCCATTCAACCTTATCACATATATGAATGTTCATATTCATCATATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCATATTGGCCATTCGGCCTT
57437009 ATCACACATATGCATGCTCACATTCATCA
66 ATCACACATATGCATGCTCACATTCATCA
** *
57437038 CATTGGCCATTCAACCTTATCACATATATGAATGTTCATATTCATCATATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCATATTGGCCATTCGGCCTT
57437103 ATCACACATATGCATGCTCACATTCATCA
66 ATCACACATATGCATGCTCACATTCATCA
*
57437132 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCA
57437179 CATAAAATCC
Statistics
Matches: 313, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 313 1.00
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCATATTGGCCATTCGGCCTT
ATCACACATATGCATGCTCACATTCATCA
Found at i:57436873 original size:22 final size:22
Alignment explanation
Indices: 57436846--57436920 Score: 57
Period size: 23 Copynumber: 3.3 Consensus size: 22
57436836 GCTCACATTC
57436846 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
57436868 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
57436892 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
57436915 ATCACA
1 ATCACA
57436921 CATATGCATG
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 11 0.28
23 12 0.30
24 12 0.30
25 5 0.12
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.29
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:57439945 original size:69 final size:70
Alignment explanation
Indices: 57439830--57439963 Score: 225
Period size: 69 Copynumber: 1.9 Consensus size: 70
57439820 TAGTTTATTA
* * * *
57439830 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTG
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
57439895 CTTAG
66 CTTAG
57439900 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
57439964 TTATGTGCTA
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 37 0.62
70 23 0.38
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
CTTAG
Found at i:57441090 original size:45 final size:45
Alignment explanation
Indices: 57441023--57441241 Score: 304
Period size: 45 Copynumber: 4.9 Consensus size: 45
57441013 TGTTGATTTG
*
57441023 ATTATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGAT
1 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT
*
57441068 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAG
1 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT
* *
57441113 ATTATTCGGGCCTTTGAGCCTAGCAGGCTACAATGTCGGTGAGAT
1 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT
* *
57441158 ACTATTCGGG-CTTTCGAGCCTAGCAAGCTATAATGCCGGTGA-A-
1 ATTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGAT
* * *
57441201 ATGATATCGGGCC-TCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 ATTAT-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
57441242 ATGAATTCGG
Statistics
Matches: 157, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
42 11 0.07
43 16 0.10
44 11 0.07
45 119 0.76
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (45 bp):
ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT
Found at i:57445676 original size:16 final size:17
Alignment explanation
Indices: 57445637--57445677 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
57445627 AAACTTCAGG
*
57445637 TTAATAAT-ATGTTATA
1 TTAATAATAATGTAATA
*
57445653 TTATTAATAATGTAAT-
1 TTAATAATAATGTAATA
57445669 TTAATAATA
1 TTAATAATA
57445678 TAAAAATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (17 bp):
TTAATAATAATGTAATA
Found at i:57446643 original size:55 final size:55
Alignment explanation
Indices: 57446583--57446694 Score: 127
Period size: 55 Copynumber: 2.0 Consensus size: 55
57446573 AAACTAAATC
* *
57446583 TTAAAAAAATTCAATAATTTTTAAATAATTTAATTATTT-TTTTTAAAATTGAAAA
1 TTAAAAAAATTCAATAATTTTAAAATAATTGAATTATTTATTTTTAAAATT-AAAA
*** * * * *
57446638 TTAAAACTTTTCAGTACTTTTAAAATAATTGGATTATTTATTTTTAATATTAAAA
1 TTAAAAAAATTCAATAATTTTAAAATAATTGAATTATTTATTTTTAAAATTAAAA
57446693 TT
1 TT
57446695 TATAAATTTG
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
55 37 0.79
56 10 0.21
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.49
Consensus pattern (55 bp):
TTAAAAAAATTCAATAATTTTAAAATAATTGAATTATTTATTTTTAAAATTAAAA
Found at i:57449434 original size:193 final size:193
Alignment explanation
Indices: 57449097--57449480 Score: 623
Period size: 193 Copynumber: 2.0 Consensus size: 193
57449087 AAACTTTGCA
*
57449097 TAAGCGTATTGTTAATCTTTTTGCTCAGCTTTGGATAGAGTTTCGGTTGTAGATGGATTTTGAGT
1 TAAGCGTATTGTTAATCTTTTTGCTCAGCTTTGGATAGAGTTTCGGTTGTAGATGGATTCTGAGT
* * *
57449162 AGTGGGTGGTTGAGGATGAGTGATTAGTAATCAAAATTAGTTTTTATCTTTTGTTTAAAAAAAAT
66 AATGGATGGTTGAGGATGAGTGATTAGTAATCAAAATTAGTTTTTATCTTTTATTTAAAAAAAAT
* *
57449227 CCTAATTCTCTCTCT-TACAGAAATTCTGCT-CAGAATTTTTGACGTGCTTTCTTTTCCTCTGCT
131 CCTAATTCTCTCTCTCAACAGAAATTCTACTACA-AA-TTTTGACGTGCTTTCTTTTCCTCTGCT
57449290 TAAGCGTATTGTTAATCTTTTTGCTCAGCTTTGGATAGAGTTTCGGTTGCTA-ATGGATTCTGAG
1 TAAGCGTATTGTTAATCTTTTTGCTCAGCTTTGGATAGAGTTTCGGTTG-TAGATGGATTCTGAG
57449354 TAATGGATGGTTGAGGATGAGTGATTAGTAATCAAAATTAGTTTTTATCTTTTATTTCAAAAAAA
65 TAATGGATGGTTGAGGATGAGTGATTAGTAATCAAAATTAGTTTTTATCTTTTATTT--AAAAAA
* *
57449419 AATCCTGATTCTCTCTC-CAACCGAAATTCTACTACAAATTTTGACGTGCTTTCTTTTCCTCT
128 AATCCTAATTCTCTCTCTCAACAGAAATTCTACTACAAATTTTGACGTGCTTTCTTTTCCTCT
57449481 ACCATCTTTC
Statistics
Matches: 178, Mismatches: 8, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
193 114 0.64
194 26 0.15
195 36 0.20
196 2 0.01
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (193 bp):
TAAGCGTATTGTTAATCTTTTTGCTCAGCTTTGGATAGAGTTTCGGTTGTAGATGGATTCTGAGT
AATGGATGGTTGAGGATGAGTGATTAGTAATCAAAATTAGTTTTTATCTTTTATTTAAAAAAAAT
CCTAATTCTCTCTCTCAACAGAAATTCTACTACAAATTTTGACGTGCTTTCTTTTCCTCTGCT
Found at i:57451421 original size:40 final size:40
Alignment explanation
Indices: 57451377--57451452 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
57451367 TTGTGCCTCA
* *
57451377 TATAGTCGAAGCTATTCT-AATTTGCACACTAAGTGCTATT
1 TATAGCCGAAGCTATTCTGAA-ATGCACACTAAGTGCTATT
*
57451417 TATAGCCGAAGCTATTTTGAAATGCACACTAAGTGC
1 TATAGCCGAAGCTATTCTGAAATGCACACTAAGTGC
57451453 CAAACGTAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 30 0.94
41 2 0.06
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (40 bp):
TATAGCCGAAGCTATTCTGAAATGCACACTAAGTGCTATT
Found at i:57472633 original size:24 final size:25
Alignment explanation
Indices: 57472601--57472652 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
57472591 AGTTTATAAA
*
57472601 TTAGTTTTTTG-AAGTCTTT-TTTAT
1 TTAGGTTTTTGTAA-TCTTTATTTAT
*
57472625 TTAGGTTTTTGTTATCTTTATTTAT
1 TTAGGTTTTTGTAATCTTTATTTAT
57472650 TTA
1 TTA
57472653 TTTATCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 15 0.62
25 9 0.38
ACGTcount: A:0.17, C:0.04, G:0.12, T:0.67
Consensus pattern (25 bp):
TTAGGTTTTTGTAATCTTTATTTAT
Found at i:57473108 original size:10 final size:10
Alignment explanation
Indices: 57473089--57473122 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
57473079 ATGTGATGCC
*
57473089 AAATGGATAG
1 AAATGAATAG
57473099 AAATGAATAG
1 AAATGAATAG
*
57473109 AAATAAATAG
1 AAATGAATAG
57473119 AAAT
1 AAAT
57473123 AATGAAGTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.62, C:0.00, G:0.18, T:0.21
Consensus pattern (10 bp):
AAATGAATAG
Found at i:57473123 original size:10 final size:10
Alignment explanation
Indices: 57473095--57473124 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
57473085 TGCCAAATGG
*
57473095 ATAGAAATGA
1 ATAGAAATAA
57473105 ATAGAAATAA
1 ATAGAAATAA
57473115 ATAGAAATAA
1 ATAGAAATAA
57473125 TGAAGTAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.20
Consensus pattern (10 bp):
ATAGAAATAA
Found at i:57473245 original size:14 final size:13
Alignment explanation
Indices: 57473223--57473275 Score: 61
Period size: 13 Copynumber: 3.9 Consensus size: 13
57473213 GAATTATTAT
*
57473223 TTAACTAATTATAA
1 TTAAATAATTA-AA
57473237 TTAAATAATTAAA
1 TTAAATAATTAAA
* *
57473250 ATAAAAAATTAAA
1 TTAAATAATTAAA
57473263 TTAAATTAATTAA
1 TTAAA-TAATTAA
57473276 TCATTATGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
13 17 0.52
14 16 0.48
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (13 bp):
TTAAATAATTAAA
Found at i:57474939 original size:21 final size:21
Alignment explanation
Indices: 57474895--57474936 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
57474885 TTAAGATTAA
* *
57474895 TAATTTAATATTCATTAATTT
1 TAATTTAATATTAATAAATTT
57474916 TAATTTAAT-TTAATAAATTT
1 TAATTTAATATTAATAAATTT
57474936 T
1 T
57474937 TAAAATAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
TAATTTAATATTAATAAATTT
Found at i:57475696 original size:9 final size:8
Alignment explanation
Indices: 57475661--57475718 Score: 64
Period size: 9 Copynumber: 7.0 Consensus size: 8
57475651 TAAAAACTAT
57475661 TTTTAAAA
1 TTTTAAAA
57475669 TTTTAAAA
1 TTTTAAAA
*
57475677 TCATTAAAA
1 T-TTTAAAA
57475686 TTATTAAAA
1 TT-TTAAAA
57475695 TTTATAAAA
1 TTT-TAAAA
*
57475704 TTAT-AAA
1 TTTTAAAA
57475711 TTTTAAAA
1 TTTTAAAA
57475719 AATAATTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
7 6 0.14
8 14 0.33
9 22 0.52
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (8 bp):
TTTTAAAA
Found at i:57475715 original size:17 final size:18
Alignment explanation
Indices: 57475659--57475728 Score: 65
Period size: 17 Copynumber: 4.0 Consensus size: 18
57475649 TATAAAAACT
*
57475659 ATTTTTAAAATT-TTAAA
1 ATTTATAAAATTATTAAA
*
57475676 A-TCATTAAAATTATTAAA
1 ATTTA-TAAAATTATTAAA
57475694 ATTTATAAAATTA-TAAA
1 ATTTATAAAATTATTAAA
* * *
57475711 TTTTAAAAAATAATTAAA
1 ATTTATAAAATTATTAAA
57475729 TATTAATATC
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
16 1 0.02
17 22 0.51
18 18 0.42
19 2 0.05
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTATAAAATTATTAAA
Found at i:57475853 original size:16 final size:18
Alignment explanation
Indices: 57475816--57475858 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
57475806 ATTTGACAAA
*
57475816 AAATATAAATTAAAAGATT
1 AAATA-AAATGAAAAGATT
57475835 AAA-AAAATGAAAA-ATT
1 AAATAAAATGAAAAGATT
57475851 AAATAAAA
1 AAATAAAA
57475859 AATTATAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 6 0.27
17 12 0.55
18 1 0.05
19 3 0.14
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (18 bp):
AAATAAAATGAAAAGATT
Found at i:57478877 original size:18 final size:18
Alignment explanation
Indices: 57478856--57478890 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
57478846 AAAATAAAAA
57478856 AAAATAAAAAAAGTAATT
1 AAAATAAAAAAAGTAATT
* *
57478874 AAAATAATAATAGTAAT
1 AAAATAAAAAAAGTAAT
57478891 CATTTAATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (18 bp):
AAAATAAAAAAAGTAATT
Found at i:57486235 original size:43 final size:42
Alignment explanation
Indices: 57486116--57486273 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 42
57486106 AAGCTCGTAA
* ***
57486116 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACAAAATCAAATA-CG
* * **
57486159 ATGCC-ACTATCCCAAACAAGGTCTTACACAAAATCAAATACG
1 ATGCCAAC-GTCCCAGACGTGGTCTTACACAAAATCAAATACG
*
57486201 ATGCCAACGTCCCAGACGTGGTCCTACACAAAAATCATAAGT-CG
1 ATGCCAACGTCCCAGACGTGGTCTTACAC-AAAATCA-AA-TACG
* *
57486245 ATGCCAACGTACCAGATGTGGTCTTACAC
1 ATGCCAACGTCCCAGACGTGGTCTTACAC
57486274 GACTACACAT
Statistics
Matches: 94, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
42 24 0.26
43 39 0.41
44 30 0.32
45 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.22
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACAAAATCAAATACG
Found at i:57488502 original size:11 final size:11
Alignment explanation
Indices: 57488486--57488511 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
57488476 CCTAGCCCTA
57488486 TTTTTTTATGT
1 TTTTTTTATGT
57488497 TTTTTTTATGT
1 TTTTTTTATGT
57488508 TTTT
1 TTTT
57488512 GAGATCCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.85
Consensus pattern (11 bp):
TTTTTTTATGT
Found at i:57490977 original size:23 final size:23
Alignment explanation
Indices: 57490947--57490992 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
57490937 AGGGGTGTTA
57490947 CATGTTAAAGATTTTAGATTTTT
1 CATGTTAAAGATTTTAGATTTTT
57490970 CATGTTAAAGATTTTAGATTTTT
1 CATGTTAAAGATTTTAGATTTTT
57490993 TCATTAATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.04, G:0.13, T:0.52
Consensus pattern (23 bp):
CATGTTAAAGATTTTAGATTTTT
Found at i:57492227 original size:21 final size:21
Alignment explanation
Indices: 57492196--57492269 Score: 64
Period size: 21 Copynumber: 3.5 Consensus size: 21
57492186 TGTGTCTAAT
57492196 TTTGAAATATTGATGTATACCA
1 TTTG-AATATTGATGTATACCA
* **
57492218 TTTGAATATTGTAT-CA-AGAA
1 TTTGAATATTG-ATGTATACCA
*
57492238 TGAT-AATATTGATGTATACCA
1 T-TTGAATATTGATGTATACCA
57492259 TTTGAATATTG
1 TTTGAATATTG
57492270 TATCAAGAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 11
0.67 0.14 0.19
Matches are distributed among these distances:
19 2 0.05
20 12 0.31
21 19 0.49
22 6 0.15
ACGTcount: A:0.36, C:0.07, G:0.15, T:0.42
Consensus pattern (21 bp):
TTTGAATATTGATGTATACCA
Found at i:57492258 original size:41 final size:41
Alignment explanation
Indices: 57492201--57492282 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
57492191 CTAATTTTGA
57492201 AATATTGATGTATACCATTTGAATATTGTATCAAGAATGAT
1 AATATTGATGTATACCATTTGAATATTGTATCAAGAATGAT
57492242 AATATTGATGTATACCATTTGAATATTGTATCAAGAATGAT
1 AATATTGATGTATACCATTTGAATATTGTATCAAGAATGAT
57492283 TTTTTAATAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (41 bp):
AATATTGATGTATACCATTTGAATATTGTATCAAGAATGAT
Found at i:57492581 original size:13 final size:13
Alignment explanation
Indices: 57492555--57492598 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
57492545 ATTATGTGTT
57492555 AAATGTGTAAATG
1 AAATGTGTAAATG
57492568 AAATG-GTAAGATG
1 AAATGTGTAA-ATG
*
57492581 AAATGTTTAAATG
1 AAATGTGTAAATG
57492594 AAATG
1 AAATG
57492599 GCTATACGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 4 0.14
13 21 0.75
14 3 0.11
ACGTcount: A:0.48, C:0.00, G:0.23, T:0.30
Consensus pattern (13 bp):
AAATGTGTAAATG
Found at i:57492668 original size:13 final size:13
Alignment explanation
Indices: 57492565--57492659 Score: 52
Period size: 13 Copynumber: 7.4 Consensus size: 13
57492555 AAATGTGTAA
* *
57492565 ATGAAATGGTAAG
1 ATGAAATGGTTAT
* *
57492578 ATGAAATGTTTAA
1 ATGAAATGGTTAT
*
57492591 ATGAAATGGCTAT
1 ATGAAATGGTTAT
* *
57492604 ACGAACATGCTTAT
1 ATGAA-ATGGTTAT
***
57492618 ATGAAA-AAATAT
1 ATGAAATGGTTAT
*
57492630 AT-ATAT-GTATAT
1 ATGAAATGGT-TAT
57492642 ATGAAATGGTTAT
1 ATGAAATGGTTAT
57492655 ATGAA
1 ATGAA
57492660 GTGTTTATAC
Statistics
Matches: 60, Mismatches: 17, Indels: 10
0.69 0.20 0.11
Matches are distributed among these distances:
11 2 0.03
12 10 0.17
13 36 0.60
14 12 0.20
ACGTcount: A:0.45, C:0.04, G:0.18, T:0.33
Consensus pattern (13 bp):
ATGAAATGGTTAT
Found at i:57496185 original size:48 final size:47
Alignment explanation
Indices: 57496093--57496211 Score: 152
Period size: 48 Copynumber: 2.6 Consensus size: 47
57496083 TAGTGTAGGA
* * * *
57496093 CATGTCTGAGACAT-GCATCGGC-TGTGAGATGTGTCAGTGTAAGAC
1 CATGTCTGGGACATGGCATCGGCACGTGAGAGGTGTCAGTATAAGAC
*
57496138 CATGTCTGGGACATGGCATCGGCACGTATAGAGGTGTCAGTATAAGAC
1 CATGTCTGGGACATGGCATCGGCACGT-GAGAGGTGTCAGTATAAGAC
* *
57496186 CATGTCTAGGACATGGCCTCGGCACG
1 CATGTCTGGGACATGGCATCGGCACG
57496212 AAAATGTGAA
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
45 13 0.20
46 8 0.12
47 2 0.03
48 41 0.64
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (47 bp):
CATGTCTGGGACATGGCATCGGCACGTGAGAGGTGTCAGTATAAGAC
Found at i:57496248 original size:50 final size:48
Alignment explanation
Indices: 57496127--57496347 Score: 150
Period size: 48 Copynumber: 4.6 Consensus size: 48
57496117 TGAGATGTGT
* *
57496127 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGAGGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAAAGGTGG
* * * *
57496175 CAGTATAAGACCATGTCTAGGACATGGCCTCGGCACG-A-AAATGTGAAAG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAAAGGTG---G
* * * *** * *
57496224 CTAGTGTAAGACCATGTCTGGGACATGGCGTTGGC-CTTGATTTTGATAGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGT-ATAAAGGT-GG
* * * *
57496274 CAGTGTAAGACCACGTTTGGGACATGGCATC-G-AC-T-TCATGGATGAG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAAAGG-TG-G
57496320 CCAGTGTAAGACCATGTCTGGGACATGG
1 -CAGTGTAAGACCATGTCTGGGACATGG
57496348 TGTCGGTATT
Statistics
Matches: 134, Mismatches: 27, Indels: 25
0.72 0.15 0.13
Matches are distributed among these distances:
45 4 0.03
46 6 0.04
47 27 0.20
48 36 0.27
49 28 0.21
50 30 0.22
51 1 0.01
52 1 0.01
53 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAAAGGTGG
Found at i:57497130 original size:20 final size:21
Alignment explanation
Indices: 57497091--57497130 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
57497081 GTTACAATGA
57497091 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
57497112 CCACACGGGCGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
57497131 GTTTCAAGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.10, C:0.40, G:0.30, T:0.20
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:57500257 original size:16 final size:16
Alignment explanation
Indices: 57500236--57500269 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
57500226 TAGAGTTTTC
*
57500236 TTTATGTTTTTTTATT
1 TTTATGTTTTGTTATT
57500252 TTTATGTTTTGTTATT
1 TTTATGTTTTGTTATT
57500268 TT
1 TT
57500270 CATACTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.79
Consensus pattern (16 bp):
TTTATGTTTTGTTATT
Found at i:57504557 original size:11 final size:11
Alignment explanation
Indices: 57504541--57504566 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
57504531 CTGAATTAAT
57504541 CCTCACTTTTC
1 CCTCACTTTTC
57504552 CCTCACTTTTC
1 CCTCACTTTTC
57504563 CCTC
1 CCTC
57504567 CATTTTTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.50, G:0.00, T:0.42
Consensus pattern (11 bp):
CCTCACTTTTC
Found at i:57504575 original size:12 final size:12
Alignment explanation
Indices: 57504544--57504580 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
57504534 AATTAATCCT
57504544 CACTTTTCCCT-
1 CACTTTTCCCTC
57504555 CACTTTTCCCTC
1 CACTTTTCCCTC
*
57504567 CA-TTTTTCCTC
1 CACTTTTCCCTC
57504578 CAC
1 CAC
57504581 ACAACTAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 21 0.91
12 2 0.09
ACGTcount: A:0.11, C:0.46, G:0.00, T:0.43
Consensus pattern (12 bp):
CACTTTTCCCTC
Found at i:57506238 original size:5 final size:6
Alignment explanation
Indices: 57506223--57506261 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
57506213 TCTTATTATC
* *
57506223 TTTTTA TTTTTA TTTTTA TTTTTC TTTTTC TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
57506262 CCATTTCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.10, C:0.05, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:57506267 original size:24 final size:24
Alignment explanation
Indices: 57506221--57506267 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
57506211 AATCTTATTA
**
57506221 TCTTTTTATTTTTATTTTTATTTT
1 TCTTTTTATTTTTATTTCCATTTT
*
57506245 TCTTTTTCTTTTTATTTCCATTT
1 TCTTTTTATTTTTATTTCCATTT
57506268 CAATTTTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.79
Consensus pattern (24 bp):
TCTTTTTATTTTTATTTCCATTTT
Found at i:57512667 original size:45 final size:45
Alignment explanation
Indices: 57512607--57512721 Score: 135
Period size: 48 Copynumber: 2.5 Consensus size: 45
57512597 CAAGAGCTAA
* * *
57512607 TGTAAGA-CATGTCTGGGACATGCATCAGCTGCG-AGATGTGTCAT
1 TGTAAGACCATGTCTGGGACATGCATCAGC-ACGTAGAGGTGTCAG
*
57512651 TGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGAGGTGTCAG
1 TGTAAGACCATGTCTGGGACAT-GCATCAGCACG--TAGAGGTGTCAG
*
57512699 TATAAGACCATGTCTGGGACATG
1 TGTAAGACCATGTCTGGGACATG
57512722 GCCTCGGTAC
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
44 7 0.11
45 16 0.26
46 7 0.11
47 1 0.02
48 30 0.49
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (45 bp):
TGTAAGACCATGTCTGGGACATGCATCAGCACGTAGAGGTGTCAG
Found at i:57513694 original size:41 final size:41
Alignment explanation
Indices: 57513607--57513696 Score: 153
Period size: 41 Copynumber: 2.2 Consensus size: 41
57513597 TGTGTCTAGG
*
57513607 CCGTGTGCGACACACGGTCAGCCCCATGGGTGTGTTCTCGA
1 CCGTGTGTGACACACGGTCAGCCCCATGGGTGTGTTCTCGA
*
57513648 CCGTGTGTGACACACGGTCAGCCCCATGGGTGTGTTCTCGG
1 CCGTGTGTGACACACGGTCAGCCCCATGGGTGTGTTCTCGA
*
57513689 TCGTGTGT
1 CCGTGTGT
57513697 CCGCTATACG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.12, C:0.29, G:0.33, T:0.26
Consensus pattern (41 bp):
CCGTGTGTGACACACGGTCAGCCCCATGGGTGTGTTCTCGA
Found at i:57522498 original size:58 final size:60
Alignment explanation
Indices: 57522417--57522617 Score: 156
Period size: 69 Copynumber: 3.2 Consensus size: 60
57522407 ATCACTTTAA
* **
57522417 TATTAAATTAATATAATACTTA-T-CAAGATAAATATTAGGTTGAATTTAATATTAAATC
1 TATTAAATTAATAAAATACTTACTACAAGATAAATATTAAATTGAATTTAATATTAAATC
** * *
57522475 TATTAAATTAATAAAATTTTTATCTACAAGATAAATATTAAATTTAATTTAATATTAAGATAA
1 TATTAAATTAATAAAATACTTA-CTACAAGATAAATATTAAATTGAATTTAATATTAA-AT-C
** * ** *
57522538 TCACTTTAATATTAAATTAACAA-AAATACTATTAAGATAGGTATTAAATTAAATTTAATATTAA
1 T-A--TTAA-ATT-AA-TAA-AATACTTACTA-CAAGATAAATATTAAATTGAATTTAATATTAA
57522602 ATC
58 ATC
*
57522605 TATTAAAATAATA
1 TATTAAATTAATA
57522618 TTATTTTTGG
Statistics
Matches: 114, Mismatches: 16, Indels: 23
0.75 0.10 0.15
Matches are distributed among these distances:
58 19 0.17
60 1 0.01
61 31 0.27
62 4 0.04
63 3 0.03
64 5 0.04
66 5 0.04
67 4 0.04
68 7 0.06
69 33 0.29
70 2 0.02
ACGTcount: A:0.50, C:0.05, G:0.04, T:0.41
Consensus pattern (60 bp):
TATTAAATTAATAAAATACTTACTACAAGATAAATATTAAATTGAATTTAATATTAAATC
Found at i:57538317 original size:21 final size:22
Alignment explanation
Indices: 57538293--57538348 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
57538283 AGCTAGAGAA
* *
57538293 TGAAATGAAATTAGATTG-AAT
1 TGAAATGAAATAAGAATGAAAT
57538314 TGAAATGAAATAAGAATGACAAT
1 TGAAATGAAATAAGAATGA-AAT
*
57538337 TGATATGAAATA
1 TGAAATGAAATA
57538349 GTACAGAGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 16 0.53
23 14 0.47
ACGTcount: A:0.52, C:0.02, G:0.18, T:0.29
Consensus pattern (22 bp):
TGAAATGAAATAAGAATGAAAT
Found at i:57541652 original size:14 final size:14
Alignment explanation
Indices: 57541626--57541659 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
57541616 TGACAGAATC
57541626 AAGAAAGGAAGAGG
1 AAGAAAGGAAGAGG
57541640 AAAGAAA-GAAGAGG
1 -AAGAAAGGAAGAGG
57541654 AAGAAA
1 AAGAAA
57541660 AACATCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 7 0.37
15 6 0.32
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (14 bp):
AAGAAAGGAAGAGG
Found at i:57545549 original size:9 final size:9
Alignment explanation
Indices: 57545522--57545567 Score: 56
Period size: 9 Copynumber: 4.9 Consensus size: 9
57545512 ACCTATAAAC
*
57545522 AAACATATT
1 AAACACATT
*
57545531 AAAACTCATT
1 -AAACACATT
57545541 AAACACATT
1 AAACACATT
57545550 AAACACATTT
1 AAACACA-TT
57545560 AAACACAT
1 AAACACAT
57545568 ATTATACTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 16 0.50
10 16 0.50
ACGTcount: A:0.54, C:0.20, G:0.00, T:0.26
Consensus pattern (9 bp):
AAACACATT
Found at i:57545682 original size:54 final size:54
Alignment explanation
Indices: 57545620--57545802 Score: 294
Period size: 54 Copynumber: 3.4 Consensus size: 54
57545610 CAACAATAAA
* * ** * ** *
57545620 TTATTCCAGTAACTAAATTAGGTAAGATGAACTTAATTAACTAAGGTGAGTAAT
1 TTATTCCAGCAACTTAATTAACTAAGATGAACTCAATTAACTAAGACGAGGAAT
57545674 TTATTCCAGCAACTTAATTAACTAAGATGAACTCAATTAACTAAGACGAGGAAT
1 TTATTCCAGCAACTTAATTAACTAAGATGAACTCAATTAACTAAGACGAGGAAT
57545728 TTATTCCAGCAACTTAATTAACTAAGATGAACTCAATTAACTAAGACGAGGAAT
1 TTATTCCAGCAACTTAATTAACTAAGATGAACTCAATTAACTAAGACGAGGAAT
57545782 TTATTCCAGCAACTTAATTAA
1 TTATTCCAGCAACTTAATTAA
57545803 TTAAACTAAA
Statistics
Matches: 121, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 121 1.00
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.31
Consensus pattern (54 bp):
TTATTCCAGCAACTTAATTAACTAAGATGAACTCAATTAACTAAGACGAGGAAT
Found at i:57546682 original size:16 final size:16
Alignment explanation
Indices: 57546661--57546692 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
57546651 TTTCCAGAAT
57546661 CAATAACACAATTCAC
1 CAATAACACAATTCAC
57546677 CAATAACACAATTCAC
1 CAATAACACAATTCAC
57546693 AAGCTTTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (16 bp):
CAATAACACAATTCAC
Found at i:57555116 original size:23 final size:26
Alignment explanation
Indices: 57555065--57555119 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 26
57555055 TATTATAAAA
57555065 ATATTAT-TTAATTAAAACATTATAG
1 ATATTATATTAATTAAAACATTATAG
57555090 --ATTATATTAATT-AAA-ATTA-AG
1 ATATTATATTAATTAAAACATTATAG
57555111 ATATTATAT
1 ATATTATAT
57555120 GAAAGGAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
21 2 0.07
22 4 0.15
23 15 0.56
24 6 0.22
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (26 bp):
ATATTATATTAATTAAAACATTATAG
Found at i:57555284 original size:18 final size:19
Alignment explanation
Indices: 57555250--57555285 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
57555240 TATTATTTAT
57555250 TATAATTATTAAATTAAAA
1 TATAATTATTAAATTAAAA
*
57555269 TATATTTATT-AATTAAA
1 TATAATTATTAAATTAAA
57555286 TAACTATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TATAATTATTAAATTAAAA
Found at i:57555445 original size:27 final size:27
Alignment explanation
Indices: 57555402--57555460 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
57555392 TTTATACTTG
57555402 TTATTAAATAGATATTTATTATT-ATTA
1 TTATTAAATAGATATTTA-TATTAATTA
*
57555429 TTATTAAAT-TATAATTTATATTAATTA
1 TTATTAAATAGAT-ATTTATATTAATTA
57555456 -TATTA
1 TTATTA
57555461 TGAGATTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 11 0.38
27 18 0.62
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (27 bp):
TTATTAAATAGATATTTATATTAATTA
Found at i:57556500 original size:6 final size:6
Alignment explanation
Indices: 57556485--57556515 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
57556475 ATTGAGTTGT
57556485 AATT-A AATTGA AATTGA AATTGA AATTGA AA
1 AATTGA AATTGA AATTGA AATTGA AATTGA AA
57556516 AGTAATATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.55, C:0.00, G:0.13, T:0.32
Consensus pattern (6 bp):
AATTGA
Found at i:57563841 original size:3 final size:3
Alignment explanation
Indices: 57563833--57563863 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
57563823 TAATATCAGA
57563833 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
57563864 TTCATACAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:57567995 original size:2 final size:2
Alignment explanation
Indices: 57567988--57568026 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
57567978 GAAAGACACC
57567988 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
57568027 ATGGGCATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:57568760 original size:2 final size:2
Alignment explanation
Indices: 57568753--57568826 Score: 82
Period size: 2 Copynumber: 38.0 Consensus size: 2
57568743 CAGCTTTAAT
*
57568753 TC TC TC TC TC TC TC TC TC TC TC TC TC TC GT- TC TT TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC -TC TC TC TC TC TC TC
* * *
57568795 TC TC TC TC TT TC TT TC -C T- TT TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
57568827 ATATCAAATA
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
1 3 0.05
2 57 0.93
3 1 0.02
ACGTcount: A:0.00, C:0.43, G:0.01, T:0.55
Consensus pattern (2 bp):
TC
Found at i:57572874 original size:61 final size:61
Alignment explanation
Indices: 57572799--57572920 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
57572789 GTAAGCCCCT
57572799 TAATCTTCCAGGCTTCAACCCATATGGGGTGCTAACCTACTAATACTATATATAATTACAG
1 TAATCTTCCAGGCTTCAACCCATATGGGGTGCTAACCTACTAATACTATATATAATTACAG
57572860 TAATCTTCCAGGCTTCAACCCATATGGGGTGCTAACCTACTAATACTATATATAATTACAG
1 TAATCTTCCAGGCTTCAACCCATATGGGGTGCTAACCTACTAATACTATATATAATTACAG
57572921 AGGAGTTCGT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (61 bp):
TAATCTTCCAGGCTTCAACCCATATGGGGTGCTAACCTACTAATACTATATATAATTACAG
Found at i:57573849 original size:22 final size:22
Alignment explanation
Indices: 57573818--57573862 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
57573808 TGAGCAACAG
57573818 TAAGTCTAAGCTTCAATAACTT
1 TAAGTCTAAGCTTCAATAACTT
*
57573840 TAAGTTTAAGCTTCAATAACTT
1 TAAGTCTAAGCTTCAATAACTT
57573862 T
1 T
57573863 CTCTAGTTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.40
Consensus pattern (22 bp):
TAAGTCTAAGCTTCAATAACTT
Found at i:57575935 original size:919 final size:920
Alignment explanation
Indices: 57574276--57576106 Score: 3486
Period size: 919 Copynumber: 2.0 Consensus size: 920
57574266 GAGGGCTATG
57574276 AACTGATCGGTTTTCTCGATGGCACTTTGGCTAGTCCACTGCGGTTTGTGCAGTCTCTAGACGGC
1 AACTGATCGGTTTTCTCGATGGCACTTTGGCTAGTCCACTGCGGTTTGTGCAGTCTCTAGACGGC
57574341 TCGCTCATTCCGAATCCTGATGCTTCAACCTTTGTGCAACAAGATCGGTTATTAACCTCATGGCT
66 TCGCTCATTCCGAATCCTGATGCTTCAACCTTTGTGCAACAAGATCGGTTATTAACCTCATGGCT
57574406 TCTTTCCACAATTAATCATTCTATTTTGTCTTCTTTTGCAGAGGCTCGATCTGCTTGTGATGTAT
131 TCTTTCCACAATTAATCATTCTATTTTGTCTTCTTTTGCAGAGGCTCGATCTGCTTGTGATGTAT
57574471 GGACTACCGCAACCCGTCTTTTTGCCCCTTTCACTGGAGCGAAGCTTGCTCGTCTTCGACACGAT
196 GGACTACCGCAACCCGTCTTTTTGCCCCTTTCACTGGAGCGAAGCTTGCTCGTCTTCGACACGAT
57574536 TTGCTTTCTCTCAAGAAAGGCAGTCTTTCAATCAAAGAATTTGTGGCCAAAATCCAGAATATGAG
261 TTGCTTTCTCTCAAGAAAGGCAGTCTTTCAATCAAAGAATTTGTGGCCAAAATCCAGAATATGAG
57574601 TGCTTTGATAACTGTCTCTGGTTCGTGCATCTCAGAAGAAGAGAAGGTCCAAACTCTGCTTGTGG
326 TGCTTTGATAACTGTCTCTGGTTCGTGCATCTCAGAAGAAGAGAAGGTCCAAACTCTGCTTGTGG
*
57574666 GCTTACCCTCTGATTTTGATTCTGTCATTACGCTCGCCTCGTTCTCATCGGAACCTTTGCGATTT
391 GCTTACCCTCTGATTTTGATTCTGTCATTACGCTCGCCTCGTTCTCATCAGAACCTTTGCGATTT
* *
57574731 CAACAACTTGTTGAAGTGCTTCTTGAGTTCGAGAATCGTCAGGCGCGTGTAGCTTCAGAGATACC
456 CAACAACTTGTTGAAGAGCTTCTTGAGTTCGAGAATCGTCAAGCGCGTGTAGCTTCAGAGATACC
* *
57574796 TCTTCATTCTAATCTCTTGGAGACTGTTCCTTTACCGATCATAGGGGGTTATGTTCGTGGTGTTC
521 TCTTCATGCTAATCTCTTGGAGACTGTTCCTTTACCGATCATAGGGGGTTATGTTCGTGGTATTC
* *
57574861 GTCCCCCATCTAGAGGTCGTGGGCGTGGGTTTTGATCCCGAGTTCAATGCCAAATCTGCGGATGG
586 ATCCCCCATCTAGAGGTCGTGGGCGTGGGTTCTGATCCCGAGTTCAATGCCAAATCTGCGGATGG
57574926 TTTGGGCATCTTACTCAATGGTGTTTCTACCGTTACGACCGTGACCATGAGGGATCGTCGTCGGA
651 TTTGGGCATCTTACTCAATGGTGTTTCTACCGTTACGACCGTGACCATGAGGGATCGTCGTCGGA
* *
57574991 TGCTTGAGCATCGTCTTCGGTAGGTCGTCGATGGACATCCATCTGATTCTGTTGTCAAATCTGTT
716 TGCTTGAGCATCGTCTTCAGTAGGTCGTCGATGGACATCCATCTGACTCTGTTGTCAAATCTGTT
57575056 TTGAATAAATGTAGTATTTCTTCAAATAAA-TTTCTATGGACACTGCATGCTCTGCATGTCAAAA
781 TTGAATAAATGTAGTATTTCTTCAAATAAATTTTCTATGGACACTGCATGCTCTGCATGTCAAAA
57575120 AAGGAAATCACATAAATTGCCCTTTACCGATTCGACCACTAAATACACTAATCCGTTTACTTTGG
846 AAGGAAATCACATAAATTGCCCTTTACCGATTCGACCACTAAATACACTAATCCGTTTACTTTGG
57575185 TTATGTTAAC
911 TTATGTTAAC
57575195 AACTGATCGGTTTTCTCGATGGCACTTTGGCTAGTCCACTGCGGTTTGTGCAGTCTCTAGACGGC
1 AACTGATCGGTTTTCTCGATGGCACTTTGGCTAGTCCACTGCGGTTTGTGCAGTCTCTAGACGGC
57575260 TCGCTCATTCCGAATCCTGATGCTTCAACCTTTGTGCAACAAGATCGGTTATTAACCTCATGGCT
66 TCGCTCATTCCGAATCCTGATGCTTCAACCTTTGTGCAACAAGATCGGTTATTAACCTCATGGCT
57575325 TCTTTCCACAATTAATCATTCTATTTTGTCTTCTTTTGCAGAGGCTCGATCTGCTTGTGATGTAT
131 TCTTTCCACAATTAATCATTCTATTTTGTCTTCTTTTGCAGAGGCTCGATCTGCTTGTGATGTAT
*
57575390 GGACTACCGTAACCCGTCTTTTTGCCCCTTTCACTAGG-GCGAAGCTTGCTCGTCTTCGACACGA
196 GGACTACCGCAACCCGTCTTTTTGCCCCTTTCACT-GGAGCGAAGCTTGCTCGTCTTCGACACGA
57575454 TTTGCTTTCTCTCAAGAAAGGCAGTCTTTCAATCAAAGAATTTGTGGCCAAAATCCAGAATATGA
260 TTTGCTTTCTCTCAAGAAAGGCAGTCTTTCAATCAAAGAATTTGTGGCCAAAATCCAGAATATGA
57575519 GTGCTTTGATAACTGTCTCTGGTTCGTGCATCTCAGAAGAAGAGAAGGTCCAAACTCTGCTTGTG
325 GTGCTTTGATAACTGTCTCTGGTTCGTGCATCTCAGAAGAAGAGAAGGTCCAAACTCTGCTTGTG
57575584 GGCTTACCCTCTGATTTTGATTCTGTCATTACGCTCGCCTCGTTCTCATCAGAACCTTTGCGATT
390 GGCTTACCCTCTGATTTTGATTCTGTCATTACGCTCGCCTCGTTCTCATCAGAACCTTTGCGATT
* *
57575649 TCAACAACTTGTTGAAGAGCTTCTTGAGTTCGAGAATCTTCAAGCGCGTGTGGCTTCAGAGATAC
455 TCAACAACTTGTTGAAGAGCTTCTTGAGTTCGAGAATCGTCAAGCGCGTGTAGCTTCAGAGATAC
* *
57575714 CTCTTCATGCTAATCTCTTGGAGACTGTTCCTTTACCGATCATAGGGGGTTCTGTTCGTGTTATT
520 CTCTTCATGCTAATCTCTTGGAGACTGTTCCTTTACCGATCATAGGGGGTTATGTTCGTGGTATT
57575779 CATCCCCCATCTAGAGGTCGTGGGCGTGGGTTCTGATCCCGAGTTCAATGCCAAATCTGCGGATG
585 CATCCCCCATCTAGAGGTCGTGGGCGTGGGTTCTGATCCCGAGTTCAATGCCAAATCTGCGGATG
*
57575844 GTTTGGGCATCTTGCTCAATGGTGTTTCTACCGTTACGACCGTGACCATGAGGGATCGTCGTCGG
650 GTTTGGGCATCTTACTCAATGGTGTTTCTACCGTTACGACCGTGACCATGAGGGATCGTCGTCGG
57575909 ATGCTTGAGCATCGTCTTCAGTAGGTCGTCGATGGACATCCATCTGACTCTGTTGTCAAATCTGT
715 ATGCTTGAGCATCGTCTTCAGTAGGTCGTCGATGGACATCCATCTGACTCTGTTGTCAAATCTGT
*
57575974 TTTGAATAAATGTAGTATTTCTTCAAATAAATTTTGTATGGACACTGCATGCTCTGCATGTCAAA
780 TTTGAATAAATGTAGTATTTCTTCAAATAAATTTTCTATGGACACTGCATGCTCTGCATGTCAAA
*
57576039 AAAGGAAATCACATAAATTGCCCTTTACCGATTCGACCACTAAATACACTGATCCGTTTACTTTG
845 AAAGGAAATCACATAAATTGCCCTTTACCGATTCGACCACTAAATACACTAATCCGTTTACTTTG
57576104 GTT
910 GTT
57576107 GTTTCTGATC
Statistics
Matches: 893, Mismatches: 17, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
919 792 0.89
920 101 0.11
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.33
Consensus pattern (920 bp):
AACTGATCGGTTTTCTCGATGGCACTTTGGCTAGTCCACTGCGGTTTGTGCAGTCTCTAGACGGC
TCGCTCATTCCGAATCCTGATGCTTCAACCTTTGTGCAACAAGATCGGTTATTAACCTCATGGCT
TCTTTCCACAATTAATCATTCTATTTTGTCTTCTTTTGCAGAGGCTCGATCTGCTTGTGATGTAT
GGACTACCGCAACCCGTCTTTTTGCCCCTTTCACTGGAGCGAAGCTTGCTCGTCTTCGACACGAT
TTGCTTTCTCTCAAGAAAGGCAGTCTTTCAATCAAAGAATTTGTGGCCAAAATCCAGAATATGAG
TGCTTTGATAACTGTCTCTGGTTCGTGCATCTCAGAAGAAGAGAAGGTCCAAACTCTGCTTGTGG
GCTTACCCTCTGATTTTGATTCTGTCATTACGCTCGCCTCGTTCTCATCAGAACCTTTGCGATTT
CAACAACTTGTTGAAGAGCTTCTTGAGTTCGAGAATCGTCAAGCGCGTGTAGCTTCAGAGATACC
TCTTCATGCTAATCTCTTGGAGACTGTTCCTTTACCGATCATAGGGGGTTATGTTCGTGGTATTC
ATCCCCCATCTAGAGGTCGTGGGCGTGGGTTCTGATCCCGAGTTCAATGCCAAATCTGCGGATGG
TTTGGGCATCTTACTCAATGGTGTTTCTACCGTTACGACCGTGACCATGAGGGATCGTCGTCGGA
TGCTTGAGCATCGTCTTCAGTAGGTCGTCGATGGACATCCATCTGACTCTGTTGTCAAATCTGTT
TTGAATAAATGTAGTATTTCTTCAAATAAATTTTCTATGGACACTGCATGCTCTGCATGTCAAAA
AAGGAAATCACATAAATTGCCCTTTACCGATTCGACCACTAAATACACTAATCCGTTTACTTTGG
TTATGTTAAC
Found at i:57580704 original size:47 final size:46
Alignment explanation
Indices: 57580602--57580724 Score: 165
Period size: 47 Copynumber: 2.7 Consensus size: 46
57580592 TTCACATAAT
* * * * * *
57580602 GATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCACT
1 GATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACACC
* *
57580648 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACC
1 GATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACACC
57580695 GATGCCATATCCCAGATATGGTCTTATACG
1 GATGCCATATCCCAGATATGGTCTTATACG
57580725 GAAATCACTT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 27 0.40
47 41 0.60
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (46 bp):
GATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACACC
Found at i:57580785 original size:31 final size:31
Alignment explanation
Indices: 57580742--57580859 Score: 173
Period size: 31 Copynumber: 3.8 Consensus size: 31
57580732 CTTGTCACTT
* *
57580742 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
57580773 GTAGTCTGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
57580804 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
***
57580835 GTAGCAAAAGCTACCACTTTTCACT
1 GTAGCCGGAGCTACCACTTTTCACT
57580860 TGTCATTTGT
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 78 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAG
Found at i:57580934 original size:50 final size:51
Alignment explanation
Indices: 57580842--57580963 Score: 210
Period size: 50 Copynumber: 2.4 Consensus size: 51
57580832 CAGGTAGCAA
* * *
57580842 AAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGTGTAGCCG
1 AAGCTATCACTTATCACTTGTCATTTATCCTTGATCAGATAAGTGTAGCCG
57580893 AAGCTATCACTTATCACTT-TCATTTATCCTTGATCAGATAAGTGTAGCCG
1 AAGCTATCACTTATCACTTGTCATTTATCCTTGATCAGATAAGTGTAGCCG
57580943 AAGCTATCACTTATCACTTGT
1 AAGCTATCACTTATCACTTGT
57580964 TGCCATGGTC
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
50 49 0.73
51 18 0.27
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (51 bp):
AAGCTATCACTTATCACTTGTCATTTATCCTTGATCAGATAAGTGTAGCCG
Found at i:57582050 original size:16 final size:18
Alignment explanation
Indices: 57582019--57582053 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
57582009 CAATTAACCC
57582019 CTCAATTAAGATAATTTT
1 CTCAATTAAGATAATTTT
57582037 CTCAATT-A-ATAATTTT
1 CTCAATTAAGATAATTTT
57582053 C
1 C
57582054 CTAGACATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 1 0.06
18 7 0.41
ACGTcount: A:0.37, C:0.14, G:0.03, T:0.46
Consensus pattern (18 bp):
CTCAATTAAGATAATTTT
Found at i:57583068 original size:357 final size:357
Alignment explanation
Indices: 57582407--57583122 Score: 1414
Period size: 357 Copynumber: 2.0 Consensus size: 357
57582397 TTCCATGGTG
*
57582407 TTTTTTCTGATGAGAATGCAGAAAAATAAAGGGAAATCTAGATAATTCCACTTTAGTCCTAGCTT
1 TTTTTGCTGATGAGAATGCAGAAAAATAAAGGGAAATCTAGATAATTCCACTTTAGTCCTAGCTT
57582472 TATTAAGTAAATTTTGTAATTTTCCAATTTTGCCCTTAATTCTACTAATTTTCTTGCTGATTTCA
66 TATTAAGTAAATTTTGTAATTTTCCAATTTTGCCCTTAATTCTACTAATTTTCTTGCTGATTTCA
57582537 TGCCATTGCCGTCCAGCCCAAAGAGACCTTGGGTCTATTTCCCTTTTAAACCCTCTTTCTTTTCT
131 TGCCATTGCCGTCCAGCCCAAAGAGACCTTGGGTCTATTTCCCTTTTAAACCCTCTTTCTTTTCT
57582602 CATTTAAGCTATTTAATCATTTCCCAAATTTTGCATTTAATACAATCTAGTCCTTTTTGTTCAAT
196 CATTTAAGCTATTTAATCATTTCCCAAATTTTGCATTTAATACAATCTAGTCCTTTTTGTTCAAT
57582667 TAACTATCAGAACTTTAAAATTTCTTGACGAAACTTTAATACTGACTTATTAACACTCCATAATT
261 TAACTATCAGAACTTTAAAATTTCTTGACGAAACTTTAATACTGACTTATTAACACTCCATAATT
57582732 ATTTATAAAAATATTTATGGCTCGATTTAAAA
326 ATTTATAAAAATATTTATGGCTCGATTTAAAA
57582764 TTTTTGCTGATGAGAATGCAGAAAAATAAAGGGAAATCTAGATAATTCCACTTTAGTCCTAGCTT
1 TTTTTGCTGATGAGAATGCAGAAAAATAAAGGGAAATCTAGATAATTCCACTTTAGTCCTAGCTT
57582829 TATTAAGTAAATTTTGTAATTTTCCAATTTTGCCCTTAATTCTACTAATTTTCTTGCTGATTTCA
66 TATTAAGTAAATTTTGTAATTTTCCAATTTTGCCCTTAATTCTACTAATTTTCTTGCTGATTTCA
57582894 TGCCATTGCCGTCCAGCCCAAAGAGACCTTGGGTCTATTTCCCTTTTAAACCCTCTTTCTTTTCT
131 TGCCATTGCCGTCCAGCCCAAAGAGACCTTGGGTCTATTTCCCTTTTAAACCCTCTTTCTTTTCT
57582959 CATTTAAGCTATTTAATCATTTCCCAAATTTTGCATTTAATACAATCTAGTCCTTTTTGTTCAAT
196 CATTTAAGCTATTTAATCATTTCCCAAATTTTGCATTTAATACAATCTAGTCCTTTTTGTTCAAT
57583024 TAACTATCAGAACTTTAAAATTTCTTGACGAAACTTTAATACTGACTTATTAACACTCCATAATT
261 TAACTATCAGAACTTTAAAATTTCTTGACGAAACTTTAATACTGACTTATTAACACTCCATAATT
*
57583089 ATTTATAAAAATATTTATGGCTTGATTTAAAA
326 ATTTATAAAAATATTTATGGCTCGATTTAAAA
57583121 TT
1 TT
57583123 CCTGAGGTCT
Statistics
Matches: 357, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
357 357 1.00
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.41
Consensus pattern (357 bp):
TTTTTGCTGATGAGAATGCAGAAAAATAAAGGGAAATCTAGATAATTCCACTTTAGTCCTAGCTT
TATTAAGTAAATTTTGTAATTTTCCAATTTTGCCCTTAATTCTACTAATTTTCTTGCTGATTTCA
TGCCATTGCCGTCCAGCCCAAAGAGACCTTGGGTCTATTTCCCTTTTAAACCCTCTTTCTTTTCT
CATTTAAGCTATTTAATCATTTCCCAAATTTTGCATTTAATACAATCTAGTCCTTTTTGTTCAAT
TAACTATCAGAACTTTAAAATTTCTTGACGAAACTTTAATACTGACTTATTAACACTCCATAATT
ATTTATAAAAATATTTATGGCTCGATTTAAAA
Found at i:57619119 original size:29 final size:31
Alignment explanation
Indices: 57619050--57619127 Score: 79
Period size: 31 Copynumber: 2.6 Consensus size: 31
57619040 AAATCAAAAG
*
57619050 TAAAGCTTCAAGTATATATTTGAACCGCAAC
1 TAAAGCTTCAAGTATATATTTGAACCGAAAC
* * * * *
57619081 TAGAGTTTCACGTATATATTTGCACC-AAAT
1 TAAAGCTTCAAGTATATATTTGAACCGAAAC
*
57619111 TAAAG-TTCATGTATATA
1 TAAAGCTTCAAGTATATA
57619128 ATTGTACATT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
29 11 0.28
30 6 0.15
31 22 0.56
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (31 bp):
TAAAGCTTCAAGTATATATTTGAACCGAAAC
Found at i:57621359 original size:22 final size:22
Alignment explanation
Indices: 57621334--57621380 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
57621324 GTAGGTACTG
*
57621334 AAGTGCGGAAC-GATAAGCACCA
1 AAGTGCGAAACAG-TAAGCACCA
*
57621356 AAGTGCGAAACAGTAAGCACTA
1 AAGTGCGAAACAGTAAGCACCA
57621378 AAG
1 AAG
57621381 CGTAAGATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.45, C:0.19, G:0.26, T:0.11
Consensus pattern (22 bp):
AAGTGCGAAACAGTAAGCACCA
Found at i:57622712 original size:18 final size:17
Alignment explanation
Indices: 57622674--57622712 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
57622664 AGGCCAATAT
*
57622674 GGGCGTGTAGGCCACAT
1 GGGCGTGTAGGCCACAC
57622691 GGGCGTGTAGGCCCACAC
1 GGGCGTGTAGG-CCACAC
57622709 GGGC
1 GGGC
57622713 AAACCAATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.15, C:0.28, G:0.44, T:0.13
Consensus pattern (17 bp):
GGGCGTGTAGGCCACAC
Found at i:57623854 original size:15 final size:16
Alignment explanation
Indices: 57623834--57623866 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
57623824 GACAATGTGA
*
57623834 TTATGT-TTGATGGAT
1 TTATGTGTTAATGGAT
57623849 TTATGTGTTAATGGAT
1 TTATGTGTTAATGGAT
57623865 TT
1 TT
57623867 TCATGTGAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55
Consensus pattern (16 bp):
TTATGTGTTAATGGAT
Found at i:57624992 original size:15 final size:16
Alignment explanation
Indices: 57624972--57625004 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
57624962 GACAATGTGA
*
57624972 TTATGT-TTGATGGAT
1 TTATGTGTTAATGGAT
57624987 TTATGTGTTAATGGAT
1 TTATGTGTTAATGGAT
57625003 TT
1 TT
57625005 TCATGTGAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55
Consensus pattern (16 bp):
TTATGTGTTAATGGAT
Found at i:57631453 original size:9 final size:10
Alignment explanation
Indices: 57631430--57631455 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
57631420 TTTTTTCTAG
57631430 AAAAAATAAT
1 AAAAAATAAT
57631440 AAAAAATAAT
1 AAAAAATAAT
57631450 AAAAAA
1 AAAAAA
57631456 GAGAAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAAATAAT
Found at i:57632064 original size:22 final size:24
Alignment explanation
Indices: 57632039--57632086 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
57632029 TTAATTTTAA
57632039 TATTAC-TTA-TACTATTATATTT
1 TATTACGTTATTACTATTATATTT
*
57632061 TATTACTGTTATTATTATTATATTT
1 TATTAC-GTTATTACTATTATATTT
57632086 T
1 T
57632087 TATTTATTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 6 0.27
24 3 0.14
25 13 0.59
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.62
Consensus pattern (24 bp):
TATTACGTTATTACTATTATATTT
Found at i:57632282 original size:14 final size:15
Alignment explanation
Indices: 57632264--57632301 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
57632254 TTATATTACG
57632264 TATATTATTTTTTTA
1 TATATTATTTTTTTA
*
57632279 -ATATTAGATTTTTTA
1 TATATTA-TTTTTTTA
57632294 TATATTAT
1 TATATTAT
57632302 GTATATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 4
0.76 0.08 0.16
Matches are distributed among these distances:
14 6 0.32
15 7 0.37
16 6 0.32
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (15 bp):
TATATTATTTTTTTA
Found at i:57632333 original size:26 final size:24
Alignment explanation
Indices: 57632286--57632398 Score: 90
Period size: 24 Copynumber: 4.5 Consensus size: 24
57632276 TTAATATTAG
57632286 ATTTTTTATATATTATGTATATAT
1 ATTTTTTATATATTATGTATATAT
*
57632310 ATTTTTATATCATATTAT-T-CATAT
1 ATTTTT-TAT-ATATTATGTATATAT
* * *
57632334 ATCTTAT-TATCTTATGTATATAT
1 ATTTTTTATATATTATGTATATAT
57632357 ATTTTTTAATAACTATATTATGTATATAT
1 A-TTTTT--T-A-TATATTATGTATATAT
57632386 ATTCTTTTA-ATAT
1 ATT-TTTTATATAT
57632399 CTTATTATCT
Statistics
Matches: 70, Mismatches: 8, Indels: 22
0.70 0.08 0.22
Matches are distributed among these distances:
21 6 0.09
22 2 0.03
23 6 0.09
24 21 0.30
25 4 0.06
26 9 0.13
27 1 0.01
28 2 0.03
29 19 0.27
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (24 bp):
ATTTTTTATATATTATGTATATAT
Found at i:57632387 original size:29 final size:29
Alignment explanation
Indices: 57632345--57632406 Score: 99
Period size: 29 Copynumber: 2.1 Consensus size: 29
57632335 TCTTATTATC
57632345 TTATGTATATATATT-TTTTAATAACTATA
1 TTATGTATATATATTCTTTTAATAACT-TA
*
57632374 TTATGTATATATATTCTTTTAATATCTTA
1 TTATGTATATATATTCTTTTAATAACTTA
57632403 TTAT
1 TTAT
57632407 CTTATTATCT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 21 0.68
30 10 0.32
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (29 bp):
TTATGTATATATATTCTTTTAATAACTTA
Found at i:57632457 original size:25 final size:25
Alignment explanation
Indices: 57632429--57632489 Score: 104
Period size: 25 Copynumber: 2.4 Consensus size: 25
57632419 ATACTCAAAA
* *
57632429 ATATTATGTATGTATTTTTAACACT
1 ATATTACGTACGTATTTTTAACACT
57632454 ATATTACGTACGTATTTTTAACACT
1 ATATTACGTACGTATTTTTAACACT
57632479 ATATTACGTAC
1 ATATTACGTAC
57632490 ATGCTTTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (25 bp):
ATATTACGTACGTATTTTTAACACT
Found at i:57632497 original size:25 final size:25
Alignment explanation
Indices: 57632444--57632499 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
57632434 ATGTATGTAT
* *
57632444 TTTTAACACTATATTACGTACGTAT
1 TTTTAACACTATATTACGTACATAC
*
57632469 TTTTAACACTATATTACGTACATGC
1 TTTTAACACTATATTACGTACATAC
57632494 TTTTAA
1 TTTTAA
57632500 TATCATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.32, C:0.16, G:0.07, T:0.45
Consensus pattern (25 bp):
TTTTAACACTATATTACGTACATAC
Found at i:57632541 original size:23 final size:26
Alignment explanation
Indices: 57632296--57632544 Score: 80
Period size: 25 Copynumber: 9.6 Consensus size: 26
57632286 ATTTTTTATA
*
57632296 TATTATGTATATATATTTTTATATCA-
1 TATTATGTATATAT-TTTTAATATCAT
* *
57632322 TATTAT-TCATATA-TCTTATTATC-T
1 TATTATGT-ATATATTTTTAATATCAT
* *
57632346 TATGTATATATAT-TTTTTAATAAC-T
1 TAT-TATGTATATATTTTTAATATCAT
57632371 ATATTATGTATATATATTCTTTTAATATC-T
1 -TATTATG--TATATA-T-TTTTAATATCAT
* * *
57632401 TATTATCT-TAT-TATCTTAATACTCAAAAA
1 TATTATGTATATAT-TTTTAATA-TC---AT
* *
57632430 TATTATGTATGTATTTTTAACA-C-T
1 TATTATGTATATATTTTTAATATCAT
* ** *
57632454 ATATTACGTACGTATTTTTAACA-C-T
1 -TATTATGTATATATTTTTAATATCAT
* * **
57632479 ATATTACGTACATGCTTTTAATATCAT
1 -TATTATGTATATATTTTTAATATCAT
57632506 TATTATGTATATATTTTTAATAT-A-
1 TATTATGTATATATTTTTAATATCAT
*
57632530 TA-TATGTGTATATTT
1 TATTATGTATATATTT
57632545 ATGTAGTATT
Statistics
Matches: 174, Mismatches: 28, Indels: 45
0.70 0.11 0.18
Matches are distributed among these distances:
23 12 0.07
24 20 0.11
25 63 0.36
26 38 0.22
27 7 0.04
28 1 0.01
29 14 0.08
30 18 0.10
31 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.05, T:0.53
Consensus pattern (26 bp):
TATTATGTATATATTTTTAATATCAT
Found at i:57632627 original size:20 final size:19
Alignment explanation
Indices: 57632602--57632651 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 19
57632592 ATGTATATAA
57632602 TATATATTTTTAATACTAT
1 TATATATTTTTAATACTAT
*
57632621 GTATATACTTTTTAATATTAT
1 -TATATA-TTTTTAATACTAT
57632642 TATTATATTT
1 TA-TATATTT
57632652 ATATTTTAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 11 0.41
21 16 0.59
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (19 bp):
TATATATTTTTAATACTAT
Found at i:57632772 original size:21 final size:21
Alignment explanation
Indices: 57632746--57632789 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
57632736 TATATGTATA
*
57632746 TATATTTATTATTATTATCAT
1 TATATTTATTATTAATATCAT
*
57632767 TATATTTATTATTAATATTAT
1 TATATTTATTATTAATATCAT
57632788 TA
1 TA
57632790 GTACTAGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
TATATTTATTATTAATATCAT
Done.