Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 184 of 322
Found at i:60540170 original size:22 final size:21
Alignment explanation
Indices: 60540101--60540171 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 21
60540091 AAAATACATT
* *
60540101 TTCTTTCTTTCTTTTTTCTCTT
1 TTCTTTCTTTC-TTTTCCTCTC
* * *
60540123 TTCTTTCTTTATTTTCTTTTC
1 TTCTTTCTTTCTTTTCCTCTC
*
60540144 TTTCTTTCTTTCTTCTCCCTCTC
1 -TTCTTTCTTTCTT-TTCCTCTC
60540167 TTCTT
1 TTCTT
60540172 CCTTATGTTC
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
21 6 0.16
22 27 0.71
23 5 0.13
ACGTcount: A:0.01, C:0.27, G:0.00, T:0.72
Consensus pattern (21 bp):
TTCTTTCTTTCTTTTCCTCTC
Found at i:60542265 original size:93 final size:96
Alignment explanation
Indices: 60542095--60542316 Score: 269
Period size: 93 Copynumber: 2.3 Consensus size: 96
60542085 GGGATAAGAT
* ** * *
60542095 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTCGATGCCATGTACCA
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTAACTAGCACAACAAAGTCGACGCCATGTACCA
60542160 GACAAGTCTTACACTAACTT-TCATATATCGAG
65 GACAAGTCTTACACTAACTTGT-ATATATCGAG
*
60542192 GCCGATGCCATGTCCCAGACAGGTCTTATACTAAC-A-CACAAC-AAG-CTGACGCCATGT-CCT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAACTAGCACAACAAAGTC-GACGCCATGTACC-
* *
60542252 AGACAGGTCTTACACTAACTTGTATATCTCGAG
64 AGACAAGTCTTACACTAACTTGTATATATCGAG
* *
60542285 GCTGATG-CATGTCCCAGACATGTCTTACACTA
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTA
60542317 GCTTTCGTCT
Statistics
Matches: 111, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
92 26 0.23
93 47 0.42
94 6 0.05
95 1 0.01
96 11 0.10
97 20 0.18
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.24
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTAACTAGCACAACAAAGTCGACGCCATGTACCAG
ACAAGTCTTACACTAACTTGTATATATCGAG
Found at i:60542350 original size:46 final size:46
Alignment explanation
Indices: 60542289--60542410 Score: 165
Period size: 46 Copynumber: 2.7 Consensus size: 46
60542279 CTCGAGGCTG
* * *
60542289 ATGCATGTCCCAGACATGTCTTACACTAGCTTTCGT-CTCAAAGCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAT-AAAGCCA
* ***
60542335 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGGCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATAAAGCCA
60542381 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
60542411 ACACATATCA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 66 0.99
47 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATAAAGCCA
Found at i:60549140 original size:25 final size:25
Alignment explanation
Indices: 60549112--60549162 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
60549102 GCTTAGTAAG
60549112 TTAGCATGTAAATAATAATCAACTT
1 TTAGCATGTAAATAATAATCAACTT
60549137 TTAGCATGTAAATAATAATCAACTT
1 TTAGCATGTAAATAATAATCAACTT
60549162 T
1 T
60549163 AAACATACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.37
Consensus pattern (25 bp):
TTAGCATGTAAATAATAATCAACTT
Found at i:60549174 original size:24 final size:24
Alignment explanation
Indices: 60549119--60549175 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
60549109 AAGTTAGCAT
* *
60549119 GTAAATAATAATCAACTTTTAGCA
1 GTAAATAATAATCAACTTTAAACA
60549143 TGTAAATAATAATCAACTTTAAACA
1 -GTAAATAATAATCAACTTTAAACA
60549168 -TACAATAA
1 GTA-AATAA
60549176 CATACACATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 2 0.07
24 5 0.17
25 22 0.76
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.32
Consensus pattern (24 bp):
GTAAATAATAATCAACTTTAAACA
Found at i:60549548 original size:42 final size:42
Alignment explanation
Indices: 60549485--60549592 Score: 105
Period size: 42 Copynumber: 2.6 Consensus size: 42
60549475 TAGCCTAGCT
*** * * *
60549485 ATGGTCTTACACG-ATTTTCATATCGATGCCATGTCCCAAAC
1 ATGGTCTTACACGTAAACTCATAACGATGACATATCCCAAAC
* *
60549526 ATGGTAC-TACACG-AAATCTCATAACGATGACATATCCCAGAT
1 ATGGT-CTTACACGTAAA-CTCATAACGATGACATATCCCAAAC
60549568 ATGGTCTTACACGTAAACTCATAAC
1 ATGGTCTTACACGTAAACTCATAAC
60549593 CCTAATGTCA
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
41 13 0.24
42 39 0.71
43 3 0.05
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (42 bp):
ATGGTCTTACACGTAAACTCATAACGATGACATATCCCAAAC
Found at i:60551764 original size:48 final size:48
Alignment explanation
Indices: 60551696--60552032 Score: 284
Period size: 48 Copynumber: 6.9 Consensus size: 48
60551686 AGGGTAAGAT
* * *
60551696 GCCGACGCCATGT-CTCGGACATGGTCTCACACTGGCTCACATATCAAA
1 GCCGATGCCATGTCCT-AGACATGGTCTTACACTGGCTCACATATCAAA
* * *
60551744 GTCGATGCCATGTCCTGGACATGGTCTTACACTGGCTCACACATCAAA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATATCAAA
* * * *
60551792 GTCGATGCCATGT-CTCAGACATGGTCTTACACTGACTCTCATATATCAAG
1 GCCGATGCCATGTCCT-AGACATGGTCTTACACTG--GCTCACATATCAAA
* * * **
60551842 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTGTCGGTA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACA--TATC-AAA
** * * * * *
60551893 -TTGATGCCATGTCCTAGACATGGTCTTACACTAGCTTTCATATCTCGAG
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGC--TCACATATCAAA
* * * * * * *
60551942 GCCGATGCCATGTCCCAGACATTGTATTACACTAGCTCTCATCTCAAT
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATATCAAA
* * *
60551990 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCCCATA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATA
60552033 ATGTGGTTGG
Statistics
Matches: 236, Mismatches: 42, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
47 2 0.01
48 120 0.51
49 3 0.01
50 107 0.45
51 1 0.00
52 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATATCAAA
Found at i:60551855 original size:50 final size:50
Alignment explanation
Indices: 60551696--60552020 Score: 283
Period size: 50 Copynumber: 6.6 Consensus size: 50
60551686 AGGGTAAGAT
* * * * * * *
60551696 GCCGACGCCATGTCTCGGACATGGTCTCACACTG--GCTCACATATCAAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCAAG
* ** * * * *
60551744 GTCGATGCCATGTCCTGGACATGGTCTTACACTG--GCTCACACATCAAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCAAG
* *
60551792 GTCGATGCCATGTCTCAGACATGGTCTTACACTGACTCTCATATATCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCAAG
* * *
60551842 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTGTC--G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCAAG
** * * * *
60551890 GTATTGATGCCATGTCCTAGACATGGTCTTACACT-AGCTTTCATATCTCGAG
1 G--CCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATCAAG
* * * *
60551942 GCCGATGCCATGTCCCAGACATTGTATTACACT-AGCTCTC--ATCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATCAAG
60551990 GCCGATGCCATGTCCCAGACATGGTCTTACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACA
60552021 TTGGCTCCCA
Statistics
Matches: 235, Mismatches: 35, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
48 110 0.47
50 123 0.52
52 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (50 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCAAG
Found at i:60551869 original size:98 final size:98
Alignment explanation
Indices: 60551702--60552020 Score: 353
Period size: 100 Copynumber: 3.3 Consensus size: 98
60551692 AGATGCCGAC
* * * * * * **
60551702 GCCATGTCTCGGACATGGTCTCACACTG--GCTCACATATCAAAGTCGATGCCATGTCCTGGACA
1 GCCATGTCTCAGACATGGTCTTACACTGACTCTCATATATCAAGGCCGATGCCATGTCCCAGACA
*
60551765 TGGTCTTACACTGGCTCACA-CATCAAAGTCGAT
66 TGGTCTTACACTGGCTCTCATC-TCAAAGTCGAT
60551798 GCCATGTCTCAGACATGGTCTTACACTGACTCTCATATATCAAGGCCGATGCCATGTCCCAGACA
1 GCCATGTCTCAGACATGGTCTTACACTGACTCTCATATATCAAGGCCGATGCCATGTCCCAGACA
** *
60551863 TGGTCTTACACTGGCTCTCATCTGTCGGTA-TTGAT
66 TGGTCTTACACTGGCTCTCATC--TC-AAAGTCGAT
* * *
60551898 GCCATGTC-CTAGACATGGTCTTACACT-AGCTTTCATATCTCGAGGCCGATGCCATGTCCCAGA
1 GCCATGTCTC-AGACATGGTCTTACACTGA-CTCTCATATATCAAGGCCGATGCCATGTCCCAGA
* * * * *
60551961 CATTGTATTACACTAGCTCTCATCTCAATGCCGAT
64 CATGGTCTTACACTGGCTCTCATCTCAAAGTCGAT
*
60551996 GCCATGTCCCAGACATGGTCTTACA
1 GCCATGTCTCAGACATGGTCTTACA
60552021 TTGGCTCCCA
Statistics
Matches: 190, Mismatches: 24, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
96 26 0.14
98 76 0.40
99 4 0.02
100 83 0.44
101 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (98 bp):
GCCATGTCTCAGACATGGTCTTACACTGACTCTCATATATCAAGGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCTCTCATCTCAAAGTCGAT
Found at i:60551994 original size:148 final size:145
Alignment explanation
Indices: 60551696--60552081 Score: 399
Period size: 148 Copynumber: 2.6 Consensus size: 145
60551686 AGGGTAAGAT
* * * * * *** *
60551696 GCCGACGCCATGTCTCGGACATGGTCTCACACTGGCTCACAT-ATCAAAGTCGATGCCATGTCCT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATAAT-GTGGTTGATGCCATGTCCT
* * * * *
60551760 GGACATGGTCTTACACTGGCTCACACATCAAAGTCGATGCCATGTCTCAGACATGGTCTTACACT
65 AGACATGGTCTTACACTAGCTCACACATCAAAGCCGATGCCATGTCCCAGACATGGTATTACACT
60551825 GACTCTCATATATCAAG
130 GACTCTCA-ATATCAAG
* *
60551842 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-CTGTCGGTATTGATGCCATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATAATGT-GG--TTGATGCCATGTC
* * * *
60551906 CTAGACATGGTCTTACACTAGCTTTCATATC-TCGAGGCCGATGCCATGTCCCAGACATTGTATT
63 CTAGACATGGTCTTACACTAGC--TCACA-CATCAAAGCCGATGCCATGTCCCAGACATGGTATT
* *
60551970 ACACT-AGCTCTC-ATCTCAAT
125 ACACTGA-CTCTCAATATCAAG
* * *
60551990 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCCCATAATGTGGTTGGTG-CATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATAATGTGGTTGATGCCATGTCCTA
* *
60552054 GACAT-GTCTTACACTAGCACACATATCA
66 GACATGGTCTTACACTAGCTCACACATCA
60552082 CCCAAATGTC
Statistics
Matches: 201, Mismatches: 30, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
142 5 0.02
144 13 0.06
145 13 0.06
146 44 0.22
148 80 0.40
149 4 0.02
150 41 0.20
151 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (145 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATAATGTGGTTGATGCCATGTCCTA
GACATGGTCTTACACTAGCTCACACATCAAAGCCGATGCCATGTCCCAGACATGGTATTACACTG
ACTCTCAATATCAAG
Found at i:60556685 original size:17 final size:17
Alignment explanation
Indices: 60556665--60556718 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
60556655 TGAATTTGAC
60556665 TCAAAACTGAATATCAA
1 TCAAAACTGAATATCAA
* * * * *
60556682 TCAAAATTAAATTTGAC
1 TCAAAACTGAATATCAA
60556699 TCAAAACTGAATATCAA
1 TCAAAACTGAATATCAA
60556716 TCA
1 TCA
60556719 TTTTTAGCCA
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (17 bp):
TCAAAACTGAATATCAA
Found at i:60556695 original size:34 final size:34
Alignment explanation
Indices: 60556651--60556718 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
60556641 CATGATTCTT
*
60556651 AAATTGAATTTGACTCAAAACTGAATATCAATCA
1 AAATTAAATTTGACTCAAAACTGAATATCAATCA
60556685 AAATTAAATTTGACTCAAAACTGAATATCAATCA
1 AAATTAAATTTGACTCAAAACTGAATATCAATCA
60556719 TTTTTAGCCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (34 bp):
AAATTAAATTTGACTCAAAACTGAATATCAATCA
Found at i:60556761 original size:11 final size:11
Alignment explanation
Indices: 60556745--60556769 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
60556735 GATTTGAATA
60556745 TAACCTAATTT
1 TAACCTAATTT
60556756 TAACCTAATTT
1 TAACCTAATTT
60556767 TAA
1 TAA
60556770 TAGTAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (11 bp):
TAACCTAATTT
Found at i:60557928 original size:23 final size:21
Alignment explanation
Indices: 60557878--60557938 Score: 61
Period size: 23 Copynumber: 2.8 Consensus size: 21
60557868 TATACCTTAG
*
60557878 ATTAAAATT-TTGATTTTTCT
1 ATTAAAATTATTTATTTTTCT
60557898 ATTAAAAATTTATTTATTTTTACT
1 ATT-AAAA-TTATTTATTTTT-CT
*
60557922 ATTAAAAATTAATTATT
1 ATT-AAAATTATTTATT
60557939 ATATGTCAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 3 0.09
21 4 0.11
22 2 0.06
23 16 0.46
24 10 0.29
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (21 bp):
ATTAAAATTATTTATTTTTCT
Found at i:60565461 original size:24 final size:24
Alignment explanation
Indices: 60565406--60565462 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
60565396 TATATCATAT
* *
60565406 TATAAATAAAAAATTAAATTATAA
1 TATATATATAAAATTAAATTATAA
* *
60565430 AATTTATATAAAATTAAA-TATACA
1 TATATATATAAAATTAAATTATA-A
60565454 TATATATAT
1 TATATATAT
60565463 GTGTAAATTC
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 4 0.15
24 22 0.85
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (24 bp):
TATATATATAAAATTAAATTATAA
Found at i:60566663 original size:18 final size:17
Alignment explanation
Indices: 60566604--60566666 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 17
60566594 TCTAATTCTA
**
60566604 ATAATTATAATTGCATC
1 ATAATTATAATTTAATC
*
60566621 ATCAATCATAATTCGTAACTC
1 AT-AATTATAATT--TAA-TC
60566642 ATAATTATAATTATAATC
1 ATAATTATAATT-TAATC
60566660 ATAATTA
1 ATAATTA
60566667 ATATATTAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
17 2 0.05
18 18 0.49
19 3 0.08
20 10 0.27
21 4 0.11
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.40
Consensus pattern (17 bp):
ATAATTATAATTTAATC
Found at i:60569939 original size:25 final size:25
Alignment explanation
Indices: 60569911--60569959 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
60569901 ATTGGCTTAT
*
60569911 TATTT-TTTTCTTCTTTTTAAGTTTA
1 TATTTATTTACTT-TTTTTAAGTTTA
*
60569936 TATTTATTTACTTTTTTTTAGTTT
1 TATTTATTTACTTTTTTTAAGTTT
60569960 TTTATTCTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.16, C:0.06, G:0.04, T:0.73
Consensus pattern (25 bp):
TATTTATTTACTTTTTTTAAGTTTA
Found at i:60569953 original size:26 final size:24
Alignment explanation
Indices: 60569911--60569959 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
60569901 ATTGGCTTAT
*
60569911 TATTTTTTTCTTCTTTTTAAGTTTA
1 TATTTTTTACTTCTTTTT-AGTTTA
*
60569936 TATTTATTTACTTTTTTTTAGTTT
1 TATTT-TTTACTTCTTTTTAGTTT
60569960 TTTATTCTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.16, C:0.06, G:0.04, T:0.73
Consensus pattern (24 bp):
TATTTTTTACTTCTTTTTAGTTTA
Found at i:60569982 original size:17 final size:16
Alignment explanation
Indices: 60569936--60569995 Score: 59
Period size: 17 Copynumber: 3.5 Consensus size: 16
60569926 TTTAAGTTTA
60569936 TATTTATTTACTTTTTTT
1 TATTTATTTA--TTTTTT
*
60569954 TAGTTT-TTTATTCTTCT
1 TA-TTTATTTATT-TTTT
60569971 TATTTATTTATTTATTT
1 TATTTATTTATTT-TTT
60569988 TATTTATT
1 TATTTATT
60569996 ATTATTAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
16 6 0.17
17 21 0.58
18 6 0.17
19 3 0.08
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (16 bp):
TATTTATTTATTTTTT
Found at i:60569989 original size:9 final size:9
Alignment explanation
Indices: 60569932--60570008 Score: 57
Period size: 10 Copynumber: 8.0 Consensus size: 9
60569922 TCTTTTTAAG
60569932 TTTATATTTA
1 TTTAT-TTTA
*
60569942 TTTACTTTTT
1 TTTA-TTTTA
*
60569952 TTTAGTTTTT
1 TTTA-TTTTA
*
60569962 TATTCTTCTTA
1 T-TTATT-TTA
60569973 TTTA-TTTA
1 TTTATTTTA
60569981 TTTATTTTA
1 TTTATTTTA
60569990 TTTATTATTA
1 TTTATT-TTA
*
60570000 TTAATTTTA
1 TTTATTTTA
60570009 AAAAACTTGA
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
8 7 0.12
9 14 0.25
10 29 0.52
11 6 0.11
ACGTcount: A:0.22, C:0.04, G:0.01, T:0.73
Consensus pattern (9 bp):
TTTATTTTA
Found at i:60570087 original size:12 final size:12
Alignment explanation
Indices: 60570015--60570088 Score: 50
Period size: 12 Copynumber: 6.2 Consensus size: 12
60570005 TTTAAAAAAC
*
60570015 TTGAAATGTATAT
1 TTGAAAT-TATTT
60570028 TTGAAA-TATTT
1 TTGAAATTATTT
60570039 TAT-AATATT-TTT
1 T-TGAA-ATTATTT
*
60570051 TT-AAA-AATTT
1 TTGAAATTATTT
60570061 TTGAATATATATTT
1 TTGAA-AT-TATTT
60570075 TTGAAATTATTT
1 TTGAAATTATTT
60570087 TT
1 TT
60570089 TAAAATTTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 17
0.71 0.04 0.24
Matches are distributed among these distances:
10 6 0.12
11 12 0.24
12 14 0.28
13 9 0.18
14 9 0.18
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (12 bp):
TTGAAATTATTT
Found at i:60570089 original size:14 final size:14
Alignment explanation
Indices: 60570057--60570088 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
60570047 TTTTTTAAAA
60570057 ATTTTTGAATATAT
1 ATTTTTGAATATAT
60570071 ATTTTTGAA-AT-T
1 ATTTTTGAATATAT
60570083 ATTTTT
1 ATTTTT
60570089 TAAAATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 2 0.11
14 9 0.50
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (14 bp):
ATTTTTGAATATAT
Found at i:60570238 original size:24 final size:25
Alignment explanation
Indices: 60570192--60570238 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
60570182 AATGTATATC
* *
60570192 TTAATTTTATATTTTAATTATTTTT
1 TTAATTTTACATTATAATTATTTTT
60570217 TTAATTTTACA-TATAATTATTT
1 TTAATTTTACATTATAATTATTT
60570239 AAATTATGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (25 bp):
TTAATTTTACATTATAATTATTTTT
Found at i:60570377 original size:17 final size:17
Alignment explanation
Indices: 60570355--60570405 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 17
60570345 TTAAAAAATA
60570355 AAAAAAAATATATTTTT
1 AAAAAAAATATATTTTT
60570372 AAAAAAAATATGACTTTTTT
1 AAAAAAAATAT-A--TTTTT
* *
60570392 AAAATACATATATT
1 AAAAAAAATATATT
60570406 AAAAAAAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
17 13 0.45
18 1 0.03
19 1 0.03
20 14 0.48
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (17 bp):
AAAAAAAATATATTTTT
Found at i:60570432 original size:13 final size:13
Alignment explanation
Indices: 60570414--60570438 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60570404 TTAAAAAAAG
60570414 TAAAAATTTAAAT
1 TAAAAATTTAAAT
60570427 TAAAAATTTAAA
1 TAAAAATTTAAA
60570439 AATTTAAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
TAAAAATTTAAAT
Found at i:60572795 original size:30 final size:30
Alignment explanation
Indices: 60572759--60572858 Score: 137
Period size: 30 Copynumber: 3.3 Consensus size: 30
60572749 GCAGAGCACA
*
60572759 TCATATCACCCGAACATTGGCGGTTCAAGT
1 TCATATCACCCGAACATAGGCGGTTCAAGT
* * *
60572789 TCATATCACTCGGACATGGGCGGTTCAAGT
1 TCATATCACCCGAACATAGGCGGTTCAAGT
* *
60572819 TCATATCACCCGAACATAAGCGGTTCGAGT
1 TCATATCACCCGAACATAGGCGGTTCAAGT
*
60572849 TCATTTCACC
1 TCATATCACC
60572859 TAGAGCAACC
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (30 bp):
TCATATCACCCGAACATAGGCGGTTCAAGT
Found at i:60575595 original size:42 final size:42
Alignment explanation
Indices: 60575530--60575614 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 42
60575520 TTATACGAAT
*
60575530 GCTCGTGTGAACAGGCCATGTGCCTCACACGACTCCAGACAC
1 GCTCGTATGAACAGGCCATGTGCCTCACACGACTCCAGACAC
*
60575572 GCTCGTATGAACAGGCCGA-GTGCCTCACACGGCTCCAGACAC
1 GCTCGTATGAACAGGCC-ATGTGCCTCACACGACTCCAGACAC
60575614 G
1 G
60575615 GCCATGTCTC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
42 39 0.98
43 1 0.03
ACGTcount: A:0.24, C:0.35, G:0.26, T:0.15
Consensus pattern (42 bp):
GCTCGTATGAACAGGCCATGTGCCTCACACGACTCCAGACAC
Found at i:60585596 original size:20 final size:21
Alignment explanation
Indices: 60585571--60585618 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
60585561 AATGCTATAT
*
60585571 AGAGGCACCATA-GTGCAACC
1 AGAGGCACCAAATGTGCAACC
*
60585591 AGAGGCA-CAAATGTGCAATC
1 AGAGGCACCAAATGTGCAACC
60585611 AGAGGCAC
1 AGAGGCAC
60585619 TGAAGTGCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 21 0.88
ACGTcount: A:0.38, C:0.25, G:0.27, T:0.10
Consensus pattern (21 bp):
AGAGGCACCAAATGTGCAACC
Found at i:60585626 original size:20 final size:20
Alignment explanation
Indices: 60585582--60585678 Score: 83
Period size: 20 Copynumber: 4.8 Consensus size: 20
60585572 GAGGCACCAT
* *
60585582 AGTGCAACCAGAGGCAC-AA
1 AGTGCAATCAGAGGCACTGA
60585601 ATGTGCAATCAGAGGCACTGA
1 A-GTGCAATCAGAGGCACTGA
*
60585622 AGTGCAAAT-AGAGACACTGA
1 AGTGC-AATCAGAGGCACTGA
* *
60585642 ATTG-TATACAGAGGCACTGA
1 AGTGCAAT-CAGAGGCACTGA
* *
60585662 AATGCAAACAGAGGCAC
1 AGTGCAATCAGAGGCAC
60585679 GAATGTGCTG
Statistics
Matches: 63, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
18 2 0.03
19 1 0.02
20 54 0.86
21 6 0.10
ACGTcount: A:0.40, C:0.20, G:0.26, T:0.14
Consensus pattern (20 bp):
AGTGCAATCAGAGGCACTGA
Found at i:60585626 original size:40 final size:41
Alignment explanation
Indices: 60585582--60585686 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 41
60585572 GAGGCACCAT
* *
60585582 AGTGCAACCAGAGGCACAAATGTGCAAT-CAGAGGCACTGA
1 AGTGCAAACAGAGGCACGAATGTGCAATACAGAGGCACTGA
* * *
60585622 AGTGCAAATAGAGACACTGAAT-TG-TATACAGAGGCACTGA
1 AGTGCAAACAGAGGCAC-GAATGTGCAATACAGAGGCACTGA
*
60585662 AATGCAAACAGAGGCACGAATGTGC
1 AGTGCAAACAGAGGCACGAATGTGC
60585687 TGTGACAGCC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
39 6 0.11
40 44 0.83
41 3 0.06
ACGTcount: A:0.39, C:0.19, G:0.27, T:0.15
Consensus pattern (41 bp):
AGTGCAAACAGAGGCACGAATGTGCAATACAGAGGCACTGA
Found at i:60599830 original size:40 final size:40
Alignment explanation
Indices: 60599775--60599887 Score: 208
Period size: 40 Copynumber: 2.8 Consensus size: 40
60599765 GAAAAAAAAA
60599775 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
*
60599815 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
*
60599855 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGC
60599888 TGGTCGTTAC
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
Found at i:60600026 original size:90 final size:90
Alignment explanation
Indices: 60599873--60600052 Score: 333
Period size: 90 Copynumber: 2.0 Consensus size: 90
60599863 GGTTAAGTCC
60599873 CGAAGGCATTTGTGCTGGTCGTTACATCCGAGCCAAATTCCGAAGGTATTTATGTTTGGAAAGGT
1 CGAAGGCATTTGTGCTGGTCGTTACATCCGAGCCAAATTCCGAAGGTATTTATGTTTGGAAAGGT
*
60599938 GCGACTTTATCGTAATAATTCCGAT
66 GCGACTCTATCGTAATAATTCCGAT
*
60599963 CGAAGGCATTTGTGCTGGTTGTTACATCCGAGCCAAATTCCGAAGGTATTTATGTTTGGAAAGGT
1 CGAAGGCATTTGTGCTGGTCGTTACATCCGAGCCAAATTCCGAAGGTATTTATGTTTGGAAAGGT
*
60600028 GCGACTCTGTCGTAATAATTCCGAT
66 GCGACTCTATCGTAATAATTCCGAT
60600053 TAATGTGCTC
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
90 87 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (90 bp):
CGAAGGCATTTGTGCTGGTCGTTACATCCGAGCCAAATTCCGAAGGTATTTATGTTTGGAAAGGT
GCGACTCTATCGTAATAATTCCGAT
Found at i:60600169 original size:112 final size:112
Alignment explanation
Indices: 60599972--60600196 Score: 423
Period size: 112 Copynumber: 2.0 Consensus size: 112
60599962 TCGAAGGCAT
*
60599972 TTGTGCTGGTTGTTACATCCGAGCCAAATTCCGAAGGTATTTATGTTTGGAAAGGTGCGACTCTG
1 TTGTGCTGGTTGTTACATCCGAGCCAAATTCCGAAGGTATTTATGTTTGGAAAGGTGCGACTCTA
60600037 TCGTAATAATTCCGATTAATGTGCTCATAATCCCTAATATGACCATG
66 TCGTAATAATTCCGATTAATGTGCTCATAATCCCTAATATGACCATG
* *
60600084 TTGTGCTGGTTGTTACATCCGAGCCAAATTTCGAAGGTATTTATGTTTGGAAAGGTGCGACTTTA
1 TTGTGCTGGTTGTTACATCCGAGCCAAATTCCGAAGGTATTTATGTTTGGAAAGGTGCGACTCTA
60600149 TCGTAATAATTCCGATTAATGTGCTCATAATCCCTAATATGACCATG
66 TCGTAATAATTCCGATTAATGTGCTCATAATCCCTAATATGACCATG
60600196 T
1 T
60600197 ATGGATCGTA
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
112 110 1.00
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (112 bp):
TTGTGCTGGTTGTTACATCCGAGCCAAATTCCGAAGGTATTTATGTTTGGAAAGGTGCGACTCTA
TCGTAATAATTCCGATTAATGTGCTCATAATCCCTAATATGACCATG
Found at i:60609417 original size:57 final size:56
Alignment explanation
Indices: 60609340--60609462 Score: 167
Period size: 57 Copynumber: 2.2 Consensus size: 56
60609330 TTTTAATAAG
* *
60609340 ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACCATATT-TTAACATA
1 ATTATTATTAAAAATAATTTAATAAAA-AA-AAATAATTTAACAACATTCTTAACATA
* * * *
60609397 ATTATTATTAAATATAATTTAATAAAAAAATATAATTTAATAACATTCTTAATATA
1 ATTATTATTAAAAATAATTTAATAAAAAAAAATAATTTAACAACATTCTTAACATA
60609453 ATTATTATTA
1 ATTATTATTA
60609463 TATGAATTAA
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
55 14 0.24
56 19 0.32
57 26 0.44
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (56 bp):
ATTATTATTAAAAATAATTTAATAAAAAAAAATAATTTAACAACATTCTTAACATA
Found at i:60609916 original size:44 final size:43
Alignment explanation
Indices: 60609848--60609934 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 43
60609838 TATAAATACA
*
60609848 TAAGGCAACCAATTTGATGCCTTTTCCAACTTGGATACCCAACC
1 TAAGGCAACCAATTTAATGCCTTTTCCAACTT-GATACCCAACC
* * *
60609892 TAAGGCAACCAATTTAATGTCTTTTCTAACTTGATACTCAACC
1 TAAGGCAACCAATTTAATGCCTTTTCCAACTTGATACCCAACC
60609935 AATTCCTGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 10 0.26
44 29 0.74
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.31
Consensus pattern (43 bp):
TAAGGCAACCAATTTAATGCCTTTTCCAACTTGATACCCAACC
Found at i:60615282 original size:31 final size:31
Alignment explanation
Indices: 60615247--60615356 Score: 96
Period size: 31 Copynumber: 3.4 Consensus size: 31
60615237 AATGGGAAGA
60615247 AGAATGAAAAAAAGAAGATGCTTCAGACGTG
1 AGAATGAAAAAAAGAAGATGCTTCAGACGTG
* * * * *
60615278 AGAATGAAAAAGAGAGAGA-GGTTGGAAGGAAATGGG
1 AGAATGAAAAAAAGA-AGATGCTT--CA-G--ACGTG
*
60615314 AAGAATGAAAAAAAGAAGTTGCTTCAGACGTG
1 -AGAATGAAAAAAAGAAGATGCTTCAGACGTG
60615346 AGAATGAAAAA
1 AGAATGAAAAA
60615357 GAGGGAGAAG
Statistics
Matches: 60, Mismatches: 11, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
31 28 0.47
32 6 0.10
33 1 0.02
34 2 0.03
35 1 0.02
36 5 0.08
37 17 0.28
ACGTcount: A:0.50, C:0.05, G:0.30, T:0.15
Consensus pattern (31 bp):
AGAATGAAAAAAAGAAGATGCTTCAGACGTG
Found at i:60615337 original size:68 final size:70
Alignment explanation
Indices: 60615209--60615364 Score: 253
Period size: 68 Copynumber: 2.2 Consensus size: 70
60615199 GGATAGAAGC
*
60615209 ATGAAAAAGAGTGAGAAGGTTGGAAGGAAATGGGAAGAAGAATGAAAAAAAGAAGATGCTTCAGA
1 ATGAAAAAGAGAGAG-AGGTTGGAAGGAAATGGG-AGAAGAATGAAAAAAAGAAGATGCTTCAGA
60615274 CGTGAGA
64 CGTGAGA
*
60615281 ATGAAAAAGAGAGAGAGGTTGGAAGGAAAT-GG-GAAGAATGAAAAAAAGAAGTTGCTTCAGACG
1 ATGAAAAAGAGAGAGAGGTTGGAAGGAAATGGGAGAAGAATGAAAAAAAGAAGATGCTTCAGACG
60615344 TGAGA
66 TGAGA
*
60615349 ATGAAAAAGAGGGAGA
1 ATGAAAAAGAGAGAGA
60615365 AGGGTAAAGT
Statistics
Matches: 81, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
68 50 0.62
70 2 0.02
71 15 0.19
72 14 0.17
ACGTcount: A:0.49, C:0.04, G:0.34, T:0.13
Consensus pattern (70 bp):
ATGAAAAAGAGAGAGAGGTTGGAAGGAAATGGGAGAAGAATGAAAAAAAGAAGATGCTTCAGACG
TGAGA
Found at i:60617002 original size:31 final size:31
Alignment explanation
Indices: 60616964--60617027 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
60616954 TCCAATAACA
*
60616964 TGGATATATTTTATGAAAAATCACTCAGGGG
1 TGGATATATTTTATGAAAAATCACTCAGAGG
*
60616995 TGGATATATTTTATGAAAAATCAGTCAGAGG
1 TGGATATATTTTATGAAAAATCACTCAGAGG
60617026 TG
1 TG
60617028 TTTTTTCATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.33
Consensus pattern (31 bp):
TGGATATATTTTATGAAAAATCACTCAGAGG
Found at i:60630487 original size:30 final size:30
Alignment explanation
Indices: 60630422--60630485 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
60630412 TAGTGGGATG
60630422 GAAAATGGCAGCTCCGTTAAGTTTGTAACA
1 GAAAATGGCAGCTCCGTTAAGTTTGTAACA
* *
60630452 GAAAATGGTAGCTCCGTTATGTTTGTAAC-
1 GAAAATGGCAGCTCCGTTAAGTTTGTAACA
60630481 GAAAA
1 GAAAA
60630486 ATTGTTAGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 5 0.16
30 27 0.84
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.28
Consensus pattern (30 bp):
GAAAATGGCAGCTCCGTTAAGTTTGTAACA
Found at i:60631449 original size:26 final size:26
Alignment explanation
Indices: 60631410--60631493 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
60631400 TGATACAAAT
* *
60631410 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
60631436 TGTTAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
60631462 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
60631488 TGATAA
1 TGATAA
60631494 GAATTTCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:60633411 original size:33 final size:34
Alignment explanation
Indices: 60633346--60633411 Score: 82
Period size: 32 Copynumber: 2.0 Consensus size: 34
60633336 CCATACTGTT
*
60633346 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTA
1 ATCTGAATAAGGGGCTAAGGCCCAGTTCATTGTA
**
60633380 ATCTGAA-AA-GGGCTCTGGCCCAGTATCATTGT
1 ATCTGAATAAGGGGCTAAGGCCCAGT-TCATTGT
60633412 TACCTAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 13 0.46
33 8 0.29
34 7 0.25
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (34 bp):
ATCTGAATAAGGGGCTAAGGCCCAGTTCATTGTA
Found at i:60635255 original size:18 final size:18
Alignment explanation
Indices: 60635232--60635268 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
60635222 AATGGAGCAA
*
60635232 ATGGAGAAGGAAGAAAAG
1 ATGGAGAAAGAAGAAAAG
*
60635250 ATGGAGAAAGAAGGAAAG
1 ATGGAGAAAGAAGAAAAG
60635268 A
1 A
60635269 AGTAAAGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.38, T:0.05
Consensus pattern (18 bp):
ATGGAGAAAGAAGAAAAG
Found at i:60635994 original size:13 final size:13
Alignment explanation
Indices: 60635973--60636010 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
60635963 ATAGGTATGA
*
60635973 TATTATTAATTTT
1 TATTTTTAATTTT
60635986 TATTTTTAATTTT
1 TATTTTTAATTTT
60635999 TAATTTTTAATT
1 T-ATTTTTAATT
60636011 ATTTTCATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 13 0.57
14 10 0.43
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TATTTTTAATTTT
Found at i:60635997 original size:7 final size:7
Alignment explanation
Indices: 60635978--60636010 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
60635968 TATGATATTA
60635978 TTAATTT
1 TTAATTT
60635985 TT-ATTT
1 TTAATTT
60635991 TTAATTT
1 TTAATTT
60635998 TTAATTT
1 TTAATTT
60636005 TTAATT
1 TTAATT
60636011 ATTTTCATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTAATTT
Found at i:60637775 original size:16 final size:16
Alignment explanation
Indices: 60637756--60637805 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
60637746 ATTTAATATT
*
60637756 TAATATTTAATATAAA
1 TAATATTTAAAATAAA
*
60637772 TAATATTCAAAATAAA
1 TAATATTTAAAATAAA
*
60637788 AAATAATTTATAAATAAA
1 TAAT-ATTTA-AAATAAA
60637806 AGAAGTTGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 17 0.61
17 4 0.14
18 7 0.25
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (16 bp):
TAATATTTAAAATAAA
Found at i:60641065 original size:122 final size:122
Alignment explanation
Indices: 60640848--60641090 Score: 477
Period size: 122 Copynumber: 2.0 Consensus size: 122
60640838 TTTTATATAG
60640848 TTCTAACTTATTAATGCCAACAATTTTTATTTTTTTTATCAATAGTTTTTCTTAAATGGTACTTA
1 TTCTAACTTATTAATGCCAACAATTTTTATTTTTTTTATCAATAGTTTTTCTTAAATGGTACTTA
60640913 ATTGAATATACCTAACTACAATAAGTTATTTATAAAGCTAAACATAAATTTTAATTA
66 ATTGAATATACCTAACTACAATAAGTTATTTATAAAGCTAAACATAAATTTTAATTA
*
60640970 TTCTAACTTATTAATGCCAACAATTTTTATTTTTTTTATCAATAGTTTTTCTTAAATGGTACTTG
1 TTCTAACTTATTAATGCCAACAATTTTTATTTTTTTTATCAATAGTTTTTCTTAAATGGTACTTA
60641035 ATTGAATATACCTAACTACAATAAGTTATTTATAAAGCTAAACATAAATTTTAATT
66 ATTGAATATACCTAACTACAATAAGTTATTTATAAAGCTAAACATAAATTTTAATT
60641091 GATATATAAC
Statistics
Matches: 120, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
122 120 1.00
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (122 bp):
TTCTAACTTATTAATGCCAACAATTTTTATTTTTTTTATCAATAGTTTTTCTTAAATGGTACTTA
ATTGAATATACCTAACTACAATAAGTTATTTATAAAGCTAAACATAAATTTTAATTA
Found at i:60641456 original size:106 final size:106
Alignment explanation
Indices: 60641271--60641481 Score: 413
Period size: 106 Copynumber: 2.0 Consensus size: 106
60641261 ATTTGTTTTT
60641271 GTCGGTTTAGGTGATTCTATAGTTTCGTGTTAGAAATTAACTGATACAGACGAGATTATCAAAAG
1 GTCGGTTTAGGTGATTCTATAGTTTCGTGTTAGAAATTAACTGATACAGACGAGATTATCAAAAG
60641336 GAAAGCAAGGCAAATCTAAAGACAATTTACAAACCCAAAAC
66 GAAAGCAAGGCAAATCTAAAGACAATTTACAAACCCAAAAC
*
60641377 GTCGGTTTAGGTGATTCTATAGTTTCGTGTTAGAAATTAACTGATACATACGAGATTATCAAAAG
1 GTCGGTTTAGGTGATTCTATAGTTTCGTGTTAGAAATTAACTGATACAGACGAGATTATCAAAAG
60641442 GAAAGCAAGGCAAATCTAAAGACAATTTACAAACCCAAAA
66 GAAAGCAAGGCAAATCTAAAGACAATTTACAAACCCAAAA
60641482 GATCAAATCA
Statistics
Matches: 104, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
106 104 1.00
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (106 bp):
GTCGGTTTAGGTGATTCTATAGTTTCGTGTTAGAAATTAACTGATACAGACGAGATTATCAAAAG
GAAAGCAAGGCAAATCTAAAGACAATTTACAAACCCAAAAC
Found at i:60653269 original size:69 final size:70
Alignment explanation
Indices: 60653094--60653269 Score: 228
Period size: 71 Copynumber: 2.5 Consensus size: 70
60653084 CTTTTCAAGG
* * * *
60653094 AAAATCAACTCATATTGCGAGAGATGAGTTAAGCCTTAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
60653159 GTTTT
66 GTTTT
* * ** * *
60653164 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
60653229 TGTTTT
65 TGTTTT
**
60653235 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCT
60653270 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
69 31 0.34
71 60 0.66
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.35
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
GTTTT
Found at i:60653650 original size:158 final size:158
Alignment explanation
Indices: 60653280--60653789 Score: 471
Period size: 161 Copynumber: 3.2 Consensus size: 158
60653270 TTTAATTTTT
* * ** * * *
60653280 TGTTTTTC--AAAATCAACTCATTTTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATT
1 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGATGAGGTAAT
* ** ** * * * * ** * *
60653343 TTCAATTT-TTGTGTTTTAATTTCAACTCATATTGCGACAGGTGAGTTGAGCCTTGGGGCACGAT
66 TTCAATTTCATGTG-TCAAAAATCAACTCATATTGCAAGAGATGAGTGGAGCC-TCAGACACGCT
* * * *
60653407 GAGGTA-TCTTTAATTTCTGCTTTTCAGTTCA
129 GAGGTATTC-TCAATTTCT-ATTTTCAATTTA
* * *
60653438 TGCTTCTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAA
1 TGTTTTTCAA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGATGAGGTAA
* * * *
60653503 TTTCAATTT-ATGT-TCCAGAATCAAGTCATATTGCAAGAGATGAGTGGAGCCTC-GACTCGCCT
65 TTTCAATTTCATGTGTCAAAAATCAACTCATATTGCAAGAGATGAGTGGAGCCTCAGA--C-AC-
*
60653565 GCTGAGGTATTCTCAATTT-TCGTTTT-AATTTA
126 GCTGAGGTATTCTCAATTTCT-ATTTTCAATTTA
* * *
60653597 TGTTTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGGCTCAGGACACGATGAGGTAAT
1 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGATGAGGTAAT
* * * *
60653662 TTCAATTTCCGTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCT
66 TTCAATTT-CATGTGTCAAAAATCAACTCATATTGCAAGAGATGAGTGGAGCCTCA-GACACGCT
* *
60653727 GAGGTATTTTCAATTTCTATTTTCAGTTTA
129 GAGGTATTCTCAATTTCTATTTTCAATTTA
*
60653757 TGTTTTTCAGAAAATCAACTCATATTGCGAGAG
1 TGTTTTTCAAAAAATCAACTCATATTGCGAGAG
60653790 TTTATAAGTC
Statistics
Matches: 289, Mismatches: 48, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
157 1 0.00
158 66 0.23
159 63 0.22
160 46 0.16
161 109 0.38
162 2 0.01
163 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.35
Consensus pattern (158 bp):
TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGATGAGGTAAT
TTCAATTTCATGTGTCAAAAATCAACTCATATTGCAAGAGATGAGTGGAGCCTCAGACACGCTGA
GGTATTCTCAATTTCTATTTTCAATTTA
Found at i:60653690 original size:73 final size:73
Alignment explanation
Indices: 60653606--60653743 Score: 231
Period size: 73 Copynumber: 1.9 Consensus size: 73
60653596 ATGTTTTTCA
* *
60653606 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGGCTCAGGACACGATGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTC
60653671 CGTTTGTC
66 CGTTTGTC
* * *
60653679 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTC
60653744 TATTTTCAGT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
73 60 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.28
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTC
CGTTTGTC
Found at i:60657373 original size:25 final size:25
Alignment explanation
Indices: 60657324--60657374 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
60657314 GGTACAAAGT
* *
60657324 AGAGTAGAACTAAACAGAACGGAGC
1 AGAGTAGAACGAAACAGAACAGAGC
* *
60657349 AGAGTAGAACGAAATAGAGCAGAGC
1 AGAGTAGAACGAAACAGAACAGAGC
60657374 A
1 A
60657375 TGTATGTTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.49, C:0.14, G:0.29, T:0.08
Consensus pattern (25 bp):
AGAGTAGAACGAAACAGAACAGAGC
Found at i:60658297 original size:42 final size:42
Alignment explanation
Indices: 60658247--60658334 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
60658237 ACACACGTTC
*
60658247 ATGTCCTTGCTCGTGTGGCTCACA-GAGCTTGGGCACACGCCT
1 ATGTCCTTGCTCGTGTGGCTCACACG-GCCTGGGCACACGCCT
*
60658289 ATGTCCTTGCTCGTGTGGCTCATACGGCCTGGGCACACGCCT
1 ATGTCCTTGCTCGTGTGGCTCACACGGCCTGGGCACACGCCT
60658331 ATGT
1 ATGT
60658335 TATCTACTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
42 42 0.98
43 1 0.02
ACGTcount: A:0.14, C:0.31, G:0.28, T:0.27
Consensus pattern (42 bp):
ATGTCCTTGCTCGTGTGGCTCACACGGCCTGGGCACACGCCT
Found at i:60658449 original size:42 final size:42
Alignment explanation
Indices: 60658385--60658569 Score: 235
Period size: 42 Copynumber: 4.4 Consensus size: 42
60658375 ACAGCCTGAA
* ** * * **
60658385 CACATGCCCATGTTTTTACCCGTGTGGCTTATATGACCCAGG
1 CACACGCCCATGTCCTTACCCGTGTGGCTTACACGACCTGGG
*
60658427 CACACGCCCATGTCCTTACCCGTGTGGCTTACACAACCTGGG
1 CACACGCCCATGTCCTTACCCGTGTGGCTTACACGACCTGGG
* * *
60658469 CACATGCCCATGTCTTTACCCGTGTGGCTCACACGACCTGGG
1 CACACGCCCATGTCCTTACCCGTGTGGCTTACACGACCTGGG
* *
60658511 CACACGCCCATGTCCTTACCTGTGTGGCTCACACGACCTGGG
1 CACACGCCCATGTCCTTACCCGTGTGGCTTACACGACCTGGG
* *
60658553 CACACGTCTATGTCCTT
1 CACACGCCCATGTCCTT
60658570 GGTCGTGTGG
Statistics
Matches: 126, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 126 1.00
ACGTcount: A:0.18, C:0.35, G:0.22, T:0.25
Consensus pattern (42 bp):
CACACGCCCATGTCCTTACCCGTGTGGCTTACACGACCTGGG
Found at i:60658513 original size:84 final size:84
Alignment explanation
Indices: 60658371--60658556 Score: 264
Period size: 84 Copynumber: 2.2 Consensus size: 84
60658361 AAACAGTGAG
* ** * * * *
60658371 TTACACAGCCTGAACACATGCCCATGTTTTTACCCGTGTGGCTTATATGACCCAGGCACACGCCC
1 TTACACAACCTGGGCACATGCCCATGTCTTTACCCGTGTGGCTCACACGACCCAGGCACACGCCC
60658436 ATGTCCTTACCCGTGTGGC
66 ATGTCCTTACCCGTGTGGC
**
60658455 TTACACAACCTGGGCACATGCCCATGTCTTTACCCGTGTGGCTCACACGACCTGGGCACACGCCC
1 TTACACAACCTGGGCACATGCCCATGTCTTTACCCGTGTGGCTCACACGACCCAGGCACACGCCC
*
60658520 ATGTCCTTACCTGTGTGGC
66 ATGTCCTTACCCGTGTGGC
* *
60658539 TCACACGACCTGGGCACA
1 TTACACAACCTGGGCACA
60658557 CGTCTATGTC
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
84 90 1.00
ACGTcount: A:0.20, C:0.35, G:0.22, T:0.24
Consensus pattern (84 bp):
TTACACAACCTGGGCACATGCCCATGTCTTTACCCGTGTGGCTCACACGACCCAGGCACACGCCC
ATGTCCTTACCCGTGTGGC
Found at i:60660852 original size:15 final size:15
Alignment explanation
Indices: 60660834--60660867 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
60660824 CTGAACAGAA
*
60660834 TAGAACAAAATTGAG
1 TAGAACAAAATAGAG
*
60660849 TAGAACAGAATAGAG
1 TAGAACAAAATAGAG
60660864 TAGA
1 TAGA
60660868 GCATGTATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.24, T:0.18
Consensus pattern (15 bp):
TAGAACAAAATAGAG
Found at i:60661251 original size:59 final size:59
Alignment explanation
Indices: 60661167--60661301 Score: 234
Period size: 59 Copynumber: 2.3 Consensus size: 59
60661157 TAGAATTTTA
* *
60661167 TTAAAGTAATAATTTAATTTTAAAAGTAGGACAACTTTTTAACTATAATTTTATATTATTT
1 TTAAAGT--TAATTTAAATTAAAAAGTAGGACAACTTTTTAACTATAATTTTATATTATTT
60661228 TTAAAGTTAATTTAAATTAAAAAGTAGGACAACTTTTTAACTATAATTTTATATTATTT
1 TTAAAGTTAATTTAAATTAAAAAGTAGGACAACTTTTTAACTATAATTTTATATTATTT
60661287 TTAAAGTTAATTTAA
1 TTAAAGTTAATTTAA
60661302 TAATATGATT
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
59 65 0.90
61 7 0.10
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.47
Consensus pattern (59 bp):
TTAAAGTTAATTTAAATTAAAAAGTAGGACAACTTTTTAACTATAATTTTATATTATTT
Found at i:60665547 original size:20 final size:20
Alignment explanation
Indices: 60665522--60665575 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
60665512 TTCAATATTA
60665522 CTTAAAACAAGCATACGAAG
1 CTTAAAACAAGCATACGAAG
60665542 CTTAAAACAAGCATACGAAG
1 CTTAAAACAAGCATACGAAG
*
60665562 CTTAAAACATGCAT
1 CTTAAAACAAGCAT
60665576 TCGGGACTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.48, C:0.20, G:0.13, T:0.19
Consensus pattern (20 bp):
CTTAAAACAAGCATACGAAG
Found at i:60667844 original size:93 final size:97
Alignment explanation
Indices: 60667738--60667911 Score: 239
Period size: 98 Copynumber: 1.8 Consensus size: 97
60667728 AGTTATACAA
* * * * * *
60667738 GCTAGTGTAAGACCTATTTGGGACATGGCGTCAG-CTTG-T-TGTG-TGTCATTGTAAGACCTGT
1 GCTAGTGTAAGACCTATTTGGAACATGGCATCAGTCTCGATATATGAAGTCAGTGTAAGACCTGT
60667799 CTAGGACATGGCATCAGCATCGATAGATGATT
66 CTAGGACATGGCATCAGCATCGATAGATGATT
* *
60667831 GCTAGTGTAAGACCTGTTTGGAACATGGCATCGGTCTCGATATATGAAAGTCAGTGTAAGACCTG
1 GCTAGTGTAAGACCTATTTGGAACATGGCATCAGTCTCGATATATG-AAGTCAGTGTAAGACCTG
60667896 TCTAGGACATGGCATC
65 TCTAGGACATGGCATC
60667912 GACTTTGATG
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
93 30 0.44
94 3 0.04
95 1 0.01
96 3 0.04
98 31 0.46
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (97 bp):
GCTAGTGTAAGACCTATTTGGAACATGGCATCAGTCTCGATATATGAAGTCAGTGTAAGACCTGT
CTAGGACATGGCATCAGCATCGATAGATGATT
Found at i:60667912 original size:49 final size:49
Alignment explanation
Indices: 60667782--60667912 Score: 160
Period size: 49 Copynumber: 2.7 Consensus size: 49
60667772 CTTGTTGTGT
* * **
60667782 GTCATTGTAAGACCTGTCTAGGACATGGCATCAGCATCGATAGATGATT
1 GTCAGTGTAAGACCTGTCTAGGACATGGCATCGGCATCGATAGATGAAA
* *
60667831 G-CTAGTGTAAGACCTGT-TTGGAACATGGCATCGGTC-TCGATATATGAAA
1 GTC-AGTGTAAGACCTGTCTAGG-ACATGGCATCGG-CATCGATAGATGAAA
60667880 GTCAGTGTAAGACCTGTCTAGGACATGGCATCG
1 GTCAGTGTAAGACCTGTCTAGGACATGGCATCG
60667913 ACTTTGATGT
Statistics
Matches: 70, Mismatches: 7, Indels: 10
0.80 0.08 0.11
Matches are distributed among these distances:
48 4 0.06
49 61 0.87
50 5 0.07
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTAGGACATGGCATCGGCATCGATAGATGAAA
Found at i:60669978 original size:23 final size:23
Alignment explanation
Indices: 60669952--60670050 Score: 112
Period size: 23 Copynumber: 4.3 Consensus size: 23
60669942 TTGATGAACA
60669952 GTAAGCTCTATCGAGCTGAAACG
1 GTAAGCTCTATCGAGCTGAAACG
*
60669975 GTAAGCTTTATCGAGCTGAAACG
1 GTAAGCTCTATCGAGCTGAAACG
* * * *
60669998 GTAAGCTTTATCGAGTTG-ATCA
1 GTAAGCTCTATCGAGCTGAAACG
* *
60670020 GTAAGCTCT-TACGAGCTTAAATG
1 GTAAGCTCTAT-CGAGCTGAAACG
60670043 GTAAGCTC
1 GTAAGCTC
60670051 CAATGAGCTA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
21 1 0.02
22 15 0.23
23 48 0.75
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (23 bp):
GTAAGCTCTATCGAGCTGAAACG
Found at i:60670046 original size:45 final size:46
Alignment explanation
Indices: 60669952--60670110 Score: 121
Period size: 45 Copynumber: 3.4 Consensus size: 46
60669942 TTGATGAACA
*
60669952 GTAAGCTCTATCGAGCTGAAACGGTAAGCTTTATCGAGCTGAAACG
1 GTAAGCTCTATCGAGCTGAAACAGTAAGCTTTATCGAGCTGAAACG
* * * * *
60669998 GTAAGCTTTATCGAGTTG-ATCAGTAAGCTCTTA-CGAGCTTAAATG
1 GTAAGCTCTATCGAGCTGAAACAGTAAGCT-TTATCGAGCTGAAACG
* * * *
60670043 GTAAGCTCCAAT-GAGCTAAAAATAGTAAGCTCTT-TCAAGCTGATATATCG
1 GTAAGCT-CTATCGAGCT-GAAACAGTAAGCT-TTATCGAGCTGA-A-A-CG
60670093 GTAAGCTC-ATACGAGCTG
1 GTAAGCTCTAT-CGAGCTG
60670111 TGGTGGGTCC
Statistics
Matches: 87, Mismatches: 16, Indels: 17
0.73 0.13 0.14
Matches are distributed among these distances:
45 30 0.34
46 21 0.24
47 18 0.21
48 3 0.03
49 2 0.02
50 13 0.15
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (46 bp):
GTAAGCTCTATCGAGCTGAAACAGTAAGCTTTATCGAGCTGAAACG
Found at i:60686984 original size:23 final size:23
Alignment explanation
Indices: 60686958--60687005 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
60686948 GTTATGTATA
*
60686958 TTATATATTATCTATTATATTAT
1 TTATATATTAACTATTATATTAT
* * *
60686981 TTATTTATTAAGTATTATTTTAT
1 TTATATATTAACTATTATATTAT
60687004 TT
1 TT
60687006 TAAAAGGATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (23 bp):
TTATATATTAACTATTATATTAT
Found at i:60687110 original size:24 final size:24
Alignment explanation
Indices: 60687083--60687130 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
60687073 AAAAAAACCC
60687083 AATATATT-TTATCATTCTTTTATA
1 AATATATTGTTATCA-TCTTTTATA
* *
60687107 AATATTTTGTTATCATGTTTTATA
1 AATATATTGTTATCATCTTTTATA
60687131 TATTGTATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58
Consensus pattern (24 bp):
AATATATTGTTATCATCTTTTATA
Found at i:60687390 original size:35 final size:35
Alignment explanation
Indices: 60687313--60687391 Score: 140
Period size: 35 Copynumber: 2.3 Consensus size: 35
60687303 ATTGATATTG
*
60687313 TATTACTCTTTTTTGTATATCATACATTATTTAAT
1 TATTACTTTTTTTTGTATATCATACATTATTTAAT
*
60687348 TATTACTTTTTTTTGTATATCATGCATTATTTAAT
1 TATTACTTTTTTTTGTATATCATACATTATTTAAT
60687383 TATTACTTT
1 TATTACTTT
60687392 GTATGTTTGT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 42 1.00
ACGTcount: A:0.27, C:0.10, G:0.04, T:0.59
Consensus pattern (35 bp):
TATTACTTTTTTTTGTATATCATACATTATTTAAT
Found at i:60698826 original size:17 final size:18
Alignment explanation
Indices: 60698804--60699543 Score: 768
Period size: 18 Copynumber: 42.3 Consensus size: 18
60698794 ATGGAAATAT
60698804 AATCTT-CA-ATGATATGC
1 AATCTTACATATGAT-TGC
*
60698821 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60698839 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60698856 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60698874 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60698891 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60698909 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60698926 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60698944 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60698961 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60698979 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60698996 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60699014 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60699031 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60699049 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60699066 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60699084 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60699101 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60699119 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60699136 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60699154 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60699171 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60699189 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60699206 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60699224 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60699241 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60699259 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60699276 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60699294 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60699311 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60699329 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60699346 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60699364 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60699381 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60699399 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60699416 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60699434 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60699451 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60699469 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60699486 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
* *
60699504 AATCTTAGATATGA-TAC
1 AATCTTACATATGATTGC
*
60699521 AATCTTAGATATGATTGC
1 AATCTTACATATGATTGC
60699539 AATCT
1 AATCT
60699544 ATGTTTTTTT
Statistics
Matches: 660, Mismatches: 41, Indels: 43
0.89 0.06 0.06
Matches are distributed among these distances:
17 326 0.49
18 329 0.50
19 5 0.01
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (18 bp):
AATCTTACATATGATTGC
Found at i:60698843 original size:35 final size:35
Alignment explanation
Indices: 60698820--60699543 Score: 1448
Period size: 35 Copynumber: 20.7 Consensus size: 35
60698810 CAATGATATG
60698820 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60698855 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60698890 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60698925 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60698960 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60698995 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60699030 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60699065 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60699100 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60699135 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60699170 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60699205 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60699240 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60699275 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60699310 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60699345 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60699380 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60699415 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60699450 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60699485 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
60699520 CAATCTTAGATATGATTGCAATCT
1 CAATCTTAGATATGATTGCAATCT
60699544 ATGTTTTTTT
Statistics
Matches: 689, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 689 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:60705015 original size:14 final size:14
Alignment explanation
Indices: 60705008--60705055 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
60704998 AAAAAAAGAG
60705008 AAAAAAA-AG-AAA
1 AAAAAAAGAGAAAA
*
60705020 AGAAAAAGAGAAAA
1 AAAAAAAGAGAAAA
*
60705034 AAATAAAGAGAAAA
1 AAAAAAAGAGAAAA
60705048 AAGAAAAA
1 AA-AAAAA
60705056 AATGGAGAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
12 6 0.21
13 2 0.07
14 17 0.59
15 4 0.14
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (14 bp):
AAAAAAAGAGAAAA
Found at i:60705028 original size:22 final size:22
Alignment explanation
Indices: 60704996--60705058 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
60704986 CTTCTATTTC
60704996 AAAA-AAAAAGAGAAAAAAA-A
1 AAAAGAAAAAGAGAAAAAAATA
60705016 GAAAAGAAAAAGAGAAAAAAATA
1 -AAAAGAAAAAGAGAAAAAAATA
*
60705039 AAGAGAAAAA-AGAAAAAAAT
1 AAAAGAAAAAGAGAAAAAAAT
60705059 GGAGAGGCCA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
21 14 0.36
22 24 0.62
23 1 0.03
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (22 bp):
AAAAGAAAAAGAGAAAAAAATA
Found at i:60706076 original size:44 final size:44
Alignment explanation
Indices: 60705935--60706114 Score: 179
Period size: 44 Copynumber: 4.1 Consensus size: 44
60705925 CAAAGAAACA
* * *
60705935 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * * **
60705979 AGATCTGACATTCCTGTGCTCTCT-GCGAAGCAGATTGAAGATTTC
1 AGATTTGGCATCCCTGTG-TTTATAGGGAA-CAGATCGAAGATAGC
*
60706024 AGCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
60706067 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
60706111 AGAT
1 AGAT
60706115 CTAACCTTCA
Statistics
Matches: 108, Mismatches: 20, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
42 2 0.02
43 16 0.15
44 73 0.68
45 16 0.15
46 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:60706314 original size:119 final size:119
Alignment explanation
Indices: 60706103--60706580 Score: 778
Period size: 119 Copynumber: 4.0 Consensus size: 119
60706093 GAACAGATCG
*
60706103 AAGATAGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
60706168 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
*
60706222 AAGATAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
*
60706287 TGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* *
60706341 AATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTGGGCATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
* * *
60706406 TGTTTACAAGGAACCAATCGAGGACATAGCAGATTTGCCTCTCAGTCGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* * * * *
60706460 AATATAGCAGATCTAACCTTCAGCTGTTTATACTGAAGCAGATCCACGATGGTTTGGCATCCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
* * * * *
60706525 TGCTTACAAGGAACAAATCGACGACATTGAAGATATGACTCTCA-ACTGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGAC-GTTCTCA
60706579 AA
1 AA
60706581 CAGACTCAAG
Statistics
Matches: 335, Mismatches: 23, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
118 1 0.00
119 334 1.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.29
Consensus pattern (119 bp):
AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
Found at i:60706647 original size:83 final size:83
Alignment explanation
Indices: 60706507--60706662 Score: 242
Period size: 83 Copynumber: 1.9 Consensus size: 83
60706497 GCAGATCCAC
* *
60706507 GATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGACGACATTGAAGATATGACTCTCA-AC
1 GATGGTTCGGCATCCTTGTGCTTACAAGGAACAAATCGACGACATAGAAGATATGACTCTCAGAC
60706571 TGTTCTCAAACAGACTCAA
66 -GTTCTCAAACAGACTCAA
* * * *
60706590 GATGGTTCGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTAGCAGATTTGACTCTCAGAC
1 GATGGTTCGGCATCCTTGTGCTTACAAGGAACAAATCGACGACATAGAAGATATGACTCTCAGAC
60706655 GTTCTCAA
66 GTTCTCAA
60706663 GTATAGCAGA
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
83 64 0.97
84 2 0.03
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.26
Consensus pattern (83 bp):
GATGGTTCGGCATCCTTGTGCTTACAAGGAACAAATCGACGACATAGAAGATATGACTCTCAGAC
GTTCTCAAACAGACTCAA
Found at i:60706736 original size:202 final size:202
Alignment explanation
Indices: 60706385--60706782 Score: 618
Period size: 202 Copynumber: 2.0 Consensus size: 202
60706375 GAAGCAGATC
* * * * *
60706385 CAAGATGATTGGGCATTCTTGTGTTTACAAGGAACCAATCGAGGACATAGCAGATTTGCCTCTCA
1 CAAGATGATTCGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
* * * *
60706450 GTCGTTCTCAAATATAGCAGATCTAACCTTCAGCTGTTTATACTGAAGCAGATCCACGATGGTTT
66 GACGTTCTCAAATATAGCAGATCTAACCTTCAGCTGTTTATACTGAAGCAGATCCAAGATGATTG
*
60706515 GGCATCCTTGTGCTTACAAGGAACAAATCGACGACATTGAAGATATGACTCTCA-ACTGTTCTCA
131 GGCATCCTTGTGCTTACAAGGAACAAATCGACGACATAGAAGATATGACTCTCAGAC-GTTCTCA
60706579 AACAGACT
195 AACAGACT
* *
60706587 CAAGATGGTTCGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTAGCAGATTTGACTCTCA
1 CAAGATGATTCGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
*
60706652 GACGTTCTCAAGTATAGCAGATCTAACCTTCAGCTGTTTATACTGAAGCAGATCCAAGATGATTG
66 GACGTTCTCAAATATAGCAGATCTAACCTTCAGCTGTTTATACTGAAGCAGATCCAAGATGATTG
* * * * *
60706717 GGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAA
131 GGCATCCTTGTGCTTACAAGGAACAAATCGACGACATAGAAGATATGACTCTCAGACGTTCTCAA
60706782 A
196 A
60706783 TATAACAGAT
Statistics
Matches: 177, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
202 175 0.99
203 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (202 bp):
CAAGATGATTCGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
GACGTTCTCAAATATAGCAGATCTAACCTTCAGCTGTTTATACTGAAGCAGATCCAAGATGATTG
GGCATCCTTGTGCTTACAAGGAACAAATCGACGACATAGAAGATATGACTCTCAGACGTTCTCAA
ACAGACT
Found at i:60706798 original size:119 final size:119
Alignment explanation
Indices: 60706587--60707139 Score: 883
Period size: 119 Copynumber: 4.6 Consensus size: 119
60706577 CAAACAGACT
* * * * *
60706587 CAAGATGGTTCGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTAGCAGATTTGACTCTCA
1 CAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
* * *
60706652 GACGTTCTCAAGTATAGCAGATCTAACCTTCAGCTGTTTATACTGAAGCAGATC
66 GACGTTCTCAAATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATC
*
60706706 CAAGATGATTGGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
1 CAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
60706771 GACGTTCTCAAATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATC
66 GACGTTCTCAAATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATC
*
60706825 CAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
1 CAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
60706890 GACGTTCTCAAATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATC
66 GACGTTCTCAAATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATC
* * * *
60706944 CAAGATGATTTGGTATTCTTGTGTTTACAA-GAGATAAATCGAGGACATAGGAAATTTGACTCTC
1 CAAGATGATTTGGCATTCTTGTGTTTACAAGGA-ACAAATCGAGGACATAGCAGATTTGACTCTC
*
60707008 AGACGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATC
65 AGACGTTCTCAAATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATC
* * * * * *
60707063 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGAAGATATGACTCTCA
1 CAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
* *
60707128 AATGTTCTCAAA
66 GACGTTCTCAAA
60707140 CAGACTCAAG
Statistics
Matches: 407, Mismatches: 25, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
118 2 0.00
119 403 0.99
120 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (119 bp):
CAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
GACGTTCTCAAATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATC
Found at i:60706855 original size:321 final size:321
Alignment explanation
Indices: 60706266--60706901 Score: 1058
Period size: 321 Copynumber: 2.0 Consensus size: 321
60706256 AAAGCAGATC
* * *
60706266 CAAGATGATTTGGCATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCA
1 CAAGATGATTCGGCATCCTTGTGCTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCA
60706331 GACGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTG
66 GACGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTG
* * *
60706396 GGCATTCTTGTGTTTACAAGGAACCAATCGAGGACATAGCAGATTTGCCTCTCAGTCGTTCTCAA
131 GGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAA
* * * *
60706461 ATATAGCAGATCTAACCTTCAGCTGTTTATACTGAAGCAGATCCACGATGGTTTGGCATCCTTGT
196 ATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
*
60706526 GCTTACAAGGAACAAATCGACGACATTGAAGATATGACTCTCA-ACTGTTCTCAAACAGACT
261 GCTTACAAGGAACAAATCGACGACATAGAAGATATGACTCTCAGAC-GTTCTCAAACAGACT
* * *
60706587 CAAGATGGTTCGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTAGCAGATTTGACTCTCA
1 CAAGATGATTCGGCATCCTTGTGCTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCA
* *
60706652 GACGTTCTCAAGTATAGCAGATCTAACCTTCAGCTGTTTATACTGAAGCAGATCCAAGATGATTG
66 GACGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTG
60706717 GGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAA
131 GGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAA
* *
60706782 ATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGT
196 ATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
* * * *
60706847 GTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
261 GCTTACAAGGAACAAATCGACGACATAGAAGATATGACTCTCAGACGTTCTCAAA
60706902 TATAACAGAT
Statistics
Matches: 292, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
321 290 0.99
322 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (321 bp):
CAAGATGATTCGGCATCCTTGTGCTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCA
GACGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTG
GGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAA
ATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
GCTTACAAGGAACAAATCGACGACATAGAAGATATGACTCTCAGACGTTCTCAAACAGACT
Found at i:60706974 original size:440 final size:440
Alignment explanation
Indices: 60706147--60707020 Score: 1450
Period size: 440 Copynumber: 2.0 Consensus size: 440
60706137 GAAGCAGATC
* * *
60706147 CAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
1 CAAGATGATTCGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
*
60706212 GACGTTCTCAAAGATAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTT
66 GACGTTCTCAAAGATAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTG
60706277 GGCATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAA
131 GGCATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAA
*
60706342 ATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTGGGCATTCTTGT
196 ATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTGGGCATTCTTGT
* * * *
60706407 GTTTACAAGGAACCAATCGAGGACATAGCAGATTTGCCTCTCAGTCGTTCTCAAATATAGCAGAT
261 GTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAACAGAT
* * *
60706472 CTAACCTTCAGCTGTTTATACTGAAGCAGATCCACGATGGTTTGGCATCCTTGTGCTTACAAG-G
326 CTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGAG
*
60706536 AACAAATCGACGACAT-TGAAGATATGACTCTCA-ACTGTTCTCAAACAGACT
391 -ACAAATCGACGACATAGGAA-ATATGACTCTCAGAC-GTTCTCAAACAGACT
* *
60706587 CAAGATGGTTCGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTAGCAGATTTGACTCTCA
1 CAAGATGATTCGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
* *
60706652 GACGTTCTC-AAGTATAGCAGATCTAACCTTCAGCTGTTTATACTGAAGCAGATCCAAGATGATT
66 GACGTTCTCAAAG-ATAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATT
*
60706716 GGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
130 GGGCATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* *
60706781 AATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
195 AATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTGGGCATTCTTG
60706846 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAACAGA
260 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAACAGA
* * *
60706911 TCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGA
325 TCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGA
* * *
60706976 GATAAATCGAGGACATAGGAAATTTGACTCTCAGACGTTCTCAAA
390 GACAAATCGACGACATAGGAAATATGACTCTCAGACGTTCTCAAA
60707021 TATAGCAGAT
Statistics
Matches: 404, Mismatches: 26, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
439 3 0.01
440 395 0.98
441 6 0.01
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (440 bp):
CAAGATGATTCGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
GACGTTCTCAAAGATAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTG
GGCATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAA
ATATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTGGGCATTCTTGT
GTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAACAGAT
CTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGAG
ACAAATCGACGACATAGGAAATATGACTCTCAGACGTTCTCAAACAGACT
Found at i:60707163 original size:559 final size:558
Alignment explanation
Indices: 60706106--60707210 Score: 1960
Period size: 559 Copynumber: 2.0 Consensus size: 558
60706096 CAGATCGAAG
*
60706106 ATAGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGATTGGGCATTCTTGTGT
*
60706171 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAGCAGATCT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAACAGATCT
60706236 AACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGAAAC
131 AACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGAAAC
*
60706301 AAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAGCAGATCTAACCTTCAGAT
196 AAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAACAGATCTAACCTTCAGAT
60706366 GTTTATACTGAAGCAGATCCAAGATGATTGGGCATTCTTGTGTTTACAAGGAACCAATCGAGGAC
261 GTTTATACTGAAGCAGATCCAAGATGATTGGGCATTCTTGTGTTTACAAGGAA-CAATCGAGGAC
* * * *
60706431 ATAGCAGATTTGCCTCTCAGTCGTTCTCAAATATAGCAGATCTAACCTTCAGCTGTTTATACTGA
325 ATAGCAAATTTGACTCTCAGACGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGA
*
60706496 AGCAGATCCACGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGACGACATTGAAGATAT
390 AGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGACGACATTGAAGATAT
*
60706561 GACTCTCAACTGTTCTCAAACAGACTCAAGATGGTTCGGCATCCTTGTGCTTACAAGGAACAAAT
455 GACTCTCAAATGTTCTCAAACAGACTCAAGATGGTTCGGCATCCTTGTGCTTACAAGGAACAAAT
* *
60706626 CGAGGACCTAGCAGATTTGACTCTCAGACGTTCTCAAGT
520 CGAGGACATAGCAGATATGACTCTCAGACGTTCTCAAGT
* *
60706665 ATAGCAGATCTAACCTTCAGCTGTTTATACTGAAGCAGATCCAAGATGATTGGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGATTGGGCATTCTTGTGT
*
60706730 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAACAGATCT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAACAGATCT
* * *
60706795 AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAAC
131 AACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGAAAC
60706860 AAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAACAGATCTAACCTTCAGAT
196 AAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAACAGATCTAACCTTCAGAT
* *
60706925 GTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAGATA-AATCGAGGA
261 GTTTATACTGAAGCAGATCCAAGATGATTGGGCATTCTTGTGTTTACAAG-GA-ACAATCGAGGA
*
60706989 CATAGGAAATTTGACTCTCAGACGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTG
324 CATAGCAAATTTGACTCTCAGACGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTG
*
60707054 AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGAAGATA
389 AAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGACGACATTGAAGATA
*
60707119 TGACTCTCAAATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAA
454 TGACTCTCAAATGTTCTCAAACAGACTCAAGATGGTTCGGCATCCTTGTGCTTACAAGGAACAAA
**
60707184 TCGAGGACATTTCAGATATGACTCTCA
519 TCGAGGACATAGCAGATATGACTCTCA
60707211 AAATGTTCTC
Statistics
Matches: 520, Mismatches: 24, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
559 517 0.99
560 2 0.00
561 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.29
Consensus pattern (558 bp):
ATAGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGATTGGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAACAGATCT
AACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGAAAC
AAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAACAGATCTAACCTTCAGAT
GTTTATACTGAAGCAGATCCAAGATGATTGGGCATTCTTGTGTTTACAAGGAACAATCGAGGACA
TAGCAAATTTGACTCTCAGACGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAA
GCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGACGACATTGAAGATATG
ACTCTCAAATGTTCTCAAACAGACTCAAGATGGTTCGGCATCCTTGTGCTTACAAGGAACAAATC
GAGGACATAGCAGATATGACTCTCAGACGTTCTCAAGT
Found at i:60707268 original size:84 final size:83
Alignment explanation
Indices: 60707063--60707486 Score: 740
Period size: 83 Copynumber: 5.1 Consensus size: 83
60707053 GAAGCAGATC
*
60707063 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGAAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
60707128 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
*
60707146 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTTCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC-
60707211 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
*
60707230 CAAGATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
60707295 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
60707313 CAAGATGGTTTGTCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
60707378 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * *
60707396 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTTGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
60707461 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
60707480 CAAGATG
1 CAAGATG
60707487 ATTCGACATC
Statistics
Matches: 326, Mismatches: 13, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
83 171 0.52
84 155 0.48
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:60707499 original size:167 final size:167
Alignment explanation
Indices: 60707063--60707499 Score: 741
Period size: 167 Copynumber: 2.6 Consensus size: 167
60707053 GAAGCAGATC
*
60707063 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGAAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
*
60707128 AATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACA
66 AATGTTCTCAAACAGACTCAAGATGGTTTGACATCCTTGTGCTTACAAGGAACAAATCGAGGACA
* *
60707193 TTTCAGATATGACTCTCAAAATGTTCTCAAACAGACT
131 TTGCAGACATGACTCTCAAAATGTTCTCAAACAGACT
*
60707230 CAAGATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
* *
60707295 AATGTTCTCAAACAGACTCAAGATGGTTTGTCATCCTTGTGCTTACAAGGAACAAATCGAGGACC
66 AATGTTCTCAAACAGACTCAAGATGGTTTGACATCCTTGTGCTTACAAGGAACAAATCGAGGACA
60707360 TTGCAGACATGACTCTC-AAATGTTCTCAAACAGACT
131 TTGCAGACATGACTCTCAAAATGTTCTCAAACAGACT
* * * *
60707396 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTTGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
* *
60707461 AAATGTTCTCAAACAGACTCAAGATGATTCGACATCCTT
65 AAATGTTCTCAAACAGACTCAAGATGGTTTGACATCCTT
60707500 ACAAATCGAA
Statistics
Matches: 255, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
166 30 0.12
167 225 0.88
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27
Consensus pattern (167 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACTCAAGATGGTTTGACATCCTTGTGCTTACAAGGAACAAATCGAGGACA
TTGCAGACATGACTCTCAAAATGTTCTCAAACAGACT
Found at i:60707923 original size:35 final size:35
Alignment explanation
Indices: 60707877--60708596 Score: 1431
Period size: 35 Copynumber: 20.5 Consensus size: 35
60707867 ATAATCTTCA
60707877 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
60707913 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60707948 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60707983 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60708018 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60708053 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60708088 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60708123 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60708158 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60708193 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60708228 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60708263 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60708298 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60708333 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60708368 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60708403 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60708438 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60708473 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60708508 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60708543 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
60708578 ATGATTGCAATCTTAGATA
1 ATGATTGCAATCTTAGATA
60708597 NNNNNNNNNN
Statistics
Matches: 684, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
35 679 0.99
36 5 0.01
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:60715140 original size:24 final size:24
Alignment explanation
Indices: 60715113--60715160 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
60715103 AAAAAAACCC
60715113 AATATATT-TTATCATTCTTTTATA
1 AATATATTGTTATCA-TCTTTTATA
* *
60715137 AATATTTTGTTATCATGTTTTATA
1 AATATATTGTTATCATCTTTTATA
60715161 TATTGTATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58
Consensus pattern (24 bp):
AATATATTGTTATCATCTTTTATA
Found at i:60715383 original size:34 final size:34
Alignment explanation
Indices: 60715333--60715410 Score: 138
Period size: 34 Copynumber: 2.3 Consensus size: 34
60715323 ATTGATATTG
60715333 TATTACTTTTTTTTGTATATCATACATTATTTAAT
1 TATTAC-TTTTTTTGTATATCATACATTATTTAAT
*
60715368 TATTACTTTTTTTGTATATCATGCATTATTTAAT
1 TATTACTTTTTTTGTATATCATACATTATTTAAT
60715402 TATTACTTT
1 TATTACTTT
60715411 GTATGTTTGT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
34 36 0.86
35 6 0.14
ACGTcount: A:0.27, C:0.09, G:0.04, T:0.60
Consensus pattern (34 bp):
TATTACTTTTTTTGTATATCATACATTATTTAAT
Found at i:60718593 original size:47 final size:46
Alignment explanation
Indices: 60718527--60718656 Score: 142
Period size: 47 Copynumber: 2.8 Consensus size: 46
60718517 GAGTTATTGT
60718527 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-ATGA-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CACATTGA-GAC
* * * *
60718573 GAGCCAGTGCAAGACTATGTCTTGGACATGGCAT-TG-ACATTGAGAC
1 GAGCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCACATTGAGAC
60718619 GAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GA--GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
60718657 TACCAGATGT
Statistics
Matches: 68, Mismatches: 8, Indels: 14
0.76 0.09 0.16
Matches are distributed among these distances:
45 7 0.10
46 20 0.29
47 26 0.38
48 15 0.22
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCACATTGAGAC
Found at i:60719955 original size:55 final size:56
Alignment explanation
Indices: 60719883--60720001 Score: 127
Period size: 55 Copynumber: 2.2 Consensus size: 56
60719873 CGTGTGCAAC
* * *
60719883 ACTGACTT-TAGGGCACGGCCAT-GACACATGCTCGTGTGGCATACCCTTGGACAAT
1 ACTGACTTATAGGACACGGCCATAG-CACATGCCCGTGTGGCATACCCGTGGACAAT
* * * * * *
60719938 ACTGACTTATA-GACACGGCTATAGCACATGCCCTTGTGTCCTACCCGTGGATAGT
1 ACTGACTTATAGGACACGGCCATAGCACATGCCCGTGTGGCATACCCGTGGACAAT
60719993 ACTGACTTA
1 ACTGACTTA
60720002 AAAGTTTAAG
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
55 50 0.94
56 3 0.06
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (56 bp):
ACTGACTTATAGGACACGGCCATAGCACATGCCCGTGTGGCATACCCGTGGACAAT
Found at i:60720969 original size:47 final size:47
Alignment explanation
Indices: 60720893--60721061 Score: 139
Period size: 47 Copynumber: 3.6 Consensus size: 47
60720883 AAGCTTAGCA
* * *
60720893 GATGCATGTCCCAGACATGTCTGAGACTGGCTACCATCATTGAGGCC
1 GATGCATGTCCCAGACACGTCTTACACTGGCTACCATCATTGAGGCC
* *
60720940 GATGCATGTCCCAGGCACGTCTTACACTGGC-ACTCATC-TCT-ACGCC
1 GATGCATGTCCCAGACACGTCTTACACTGGCTAC-CATCAT-TGAGGCC
* * * * * * * * *
60720986 GATGCCATGTCTCAGACATGGTCTTACACTAGTTATCGT-AATGTGGCT
1 GATG-CATGTCCCAGACA-CGTCTTACACTGGCTACCATCATTGAGGCC
*
60721034 GATGCATGTCCTAGACACGTCTTACACT
1 GATGCATGTCCCAGACACGTCTTACACT
60721062 AGCCCTCGTC
Statistics
Matches: 96, Mismatches: 19, Indels: 15
0.74 0.15 0.12
Matches are distributed among these distances:
46 21 0.22
47 55 0.57
48 19 0.20
49 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACACGTCTTACACTGGCTACCATCATTGAGGCC
Found at i:60721084 original size:46 final size:48
Alignment explanation
Indices: 60720937--60721109 Score: 139
Period size: 47 Copynumber: 3.7 Consensus size: 48
60720927 CATCATTGAG
* * * * * *
60720937 GCCGATG-CATGTCCCAGGCA-CGTCTTACACTGGCACTCATCTCTAC
1 GCCGATGCCATGTCCTAGACATCGTCTTACACTAGCACTCGTCTCAAT
* *
60720983 GCCGATGCCATGT-CTCAGACATGGTCTTACACTAGTTA-TCG--T-AATGT
1 GCCGATGCCATGTCCT-AGACATCGTCTTACACTAG-CACTCGTCTCAA--T
* *
60721030 GGCTGATG-CATGTCCTAGACA-CGTCTTACACTAGCCCTCGTCTCAAT
1 -GCCGATGCCATGTCCTAGACATCGTCTTACACTAGCACTCGTCTCAAT
*
60721077 GCCGATGCCATGTCCTAGACATGGTCTTACACT
1 GCCGATGCCATGTCCTAGACATCGTCTTACACT
60721110 GGTTCTCACA
Statistics
Matches: 99, Mismatches: 14, Indels: 26
0.71 0.10 0.19
Matches are distributed among these distances:
45 1 0.01
46 30 0.30
47 33 0.33
48 32 0.32
49 3 0.03
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCTAGACATCGTCTTACACTAGCACTCGTCTCAAT
Found at i:60722858 original size:29 final size:29
Alignment explanation
Indices: 60722792--60722862 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 29
60722782 TATATATTGG
60722792 GTTCGCACACTTAGTGCCATGCACTTTAA
1 GTTCGCACACTTAGTGCCATGCACTTTAA
** *
60722821 ACTCACACACTTAGTGCCATGCA-TTTCAA
1 GTTCGCACACTTAGTGCCATGCACTTT-AA
60722850 GTTCGCACACTTA
1 GTTCGCACACTTA
60722863 CCTTTTCCGC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
28 3 0.09
29 32 0.91
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (29 bp):
GTTCGCACACTTAGTGCCATGCACTTTAA
Found at i:60723032 original size:29 final size:29
Alignment explanation
Indices: 60722970--60723036 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
60722960 AATCAACTAT
*
60722970 GCACACTTAGTGCCATGTACTTTAAACTC
1 GCACACTTAGTGCCATGCACTTTAAACTC
* **
60722999 ACACACTTAGTGCCATGCA-TTTCAAGTTC
1 GCACACTTAGTGCCATGCACTTT-AAACTC
60723028 GCACACTTA
1 GCACACTTA
60723037 CCTTTTCCGC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATGCACTTTAAACTC
Found at i:60723178 original size:29 final size:30
Alignment explanation
Indices: 60723144--60723216 Score: 107
Period size: 29 Copynumber: 2.5 Consensus size: 30
60723134 AATCAACTAT
*
60723144 GCACACTTAGTGCCATGTAC-TTTAAACTC
1 GCACACTTAGTGCCATGTACATTTAAACCC
60723173 GCACACTTAGTG-C-TGTACAATTTAAACCC
1 GCACACTTAGTGCCATGTAC-ATTTAAACCC
60723202 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
60723217 ATCTCATGAC
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
27 5 0.13
28 1 0.03
29 32 0.82
30 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (30 bp):
GCACACTTAGTGCCATGTACATTTAAACCC
Found at i:60723210 original size:174 final size:174
Alignment explanation
Indices: 60722796--60723185 Score: 762
Period size: 174 Copynumber: 2.2 Consensus size: 174
60722786 TATTGGGTTC
*
60722796 GCACACTTAGTGCCATGCACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACT
1 GCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACT
60722861 TACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATAGAA
66 TACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATAGAA
60722926 AATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACTAT
131 AATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACTAT
60722970 GCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACT
1 GCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACT
60723035 TACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATAGAA
66 TACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATAGAA
60723100 AATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACTAT
131 AATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACTAT
*
60723144 GCACACTTAGTGCCATGTACTTTAAACTCGCACACTTAGTGC
1 GCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGC
60723186 TGTACAATTT
Statistics
Matches: 214, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 214 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (174 bp):
GCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACT
TACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATAGAA
AATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACTAT
Found at i:60724948 original size:30 final size:30
Alignment explanation
Indices: 60724907--60724964 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
60724897 AATTTCACAT
* *
60724907 CTTTGGTAAAATGACCATTTTGCCCCTAGG
1 CTTTGGCAAAATGACCATTTTACCCCTAGG
60724937 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
60724965 TATTCGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGG
Found at i:60728955 original size:8 final size:7
Alignment explanation
Indices: 60728937--60729014 Score: 84
Period size: 7 Copynumber: 10.9 Consensus size: 7
60728927 AATGACCCCT
60728937 ACCCTAA
1 ACCCTAA
60728944 ACCCTAAA
1 ACCCT-AA
60728952 ACCCTAA
1 ACCCTAA
60728959 ACCCTAA
1 ACCCTAA
*
60728966 ACCATAA
1 ACCCTAA
*
60728973 ACCTTAAA
1 ACCCT-AA
*
60728981 ACCTTAA
1 ACCCTAA
* *
60728988 ATCTTAA
1 ACCCTAA
*
60728995 AGCCTAA
1 ACCCTAA
60729002 ACCCTAA
1 ACCCTAA
60729009 ACCCTA
1 ACCCTA
60729015 CATACTTGGT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
7 49 0.78
8 14 0.22
ACGTcount: A:0.45, C:0.35, G:0.01, T:0.19
Consensus pattern (7 bp):
ACCCTAA
Found at i:60728980 original size:29 final size:29
Alignment explanation
Indices: 60728939--60729014 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 29
60728929 TGACCCCTAC
60728939 CCTAAACCCTAAAACCCTAAACCCTAAA-
1 CCTAAACCCTAAAACCCTAAACCCTAAAG
* * * *
60728967 CCATAAACCTTAAAACCTTAAATCTTAAAG
1 CC-TAAACCCTAAAACCCTAAACCCTAAAG
60728997 CCTAAACCCT-AAACCCTA
1 CCTAAACCCTAAAACCCTA
60729015 CATACTTGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
28 9 0.22
29 29 0.73
30 2 0.05
ACGTcount: A:0.45, C:0.34, G:0.01, T:0.20
Consensus pattern (29 bp):
CCTAAACCCTAAAACCCTAAACCCTAAAG
Found at i:60733353 original size:40 final size:40
Alignment explanation
Indices: 60733306--60733450 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
60733296 CTCGCACAAG
* * * * *
60733306 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
60733346 GCCTTCGGGACTTAGCTCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
60733386 GCCTTC-GGATCTTAGTCCAGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
60733427 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
60733451 CATTCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.03
40 56 0.64
41 26 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:60733681 original size:61 final size:61
Alignment explanation
Indices: 60733586--60733707 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
60733576 GCATGATTTT
60733586 GATTTACTTAAGACATAATCTAATCGAATCATAATTTAAGTCCCATTACTCGAAAACTTAC
1 GATTTACTTAAGACATAATCTAATCGAATCATAATTTAAGTCCCATTACTCGAAAACTTAC
60733647 GATTTACTTAAGACATAATCTAATCGAATCATAATTTAAGTCCCATTACTCGAAAACTTAC
1 GATTTACTTAAGACATAATCTAATCGAATCATAATTTAAGTCCCATTACTCGAAAACTTAC
60733708 CTCGGATGTT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (61 bp):
GATTTACTTAAGACATAATCTAATCGAATCATAATTTAAGTCCCATTACTCGAAAACTTAC
Found at i:60742778 original size:39 final size:40
Alignment explanation
Indices: 60742653--60742837 Score: 184
Period size: 40 Copynumber: 4.7 Consensus size: 40
60742643 GCTACTCGTT
* *
60742653 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
60742693 CAAATGCCTTCGGGACTTAACCC-GAATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAA-TTAGTAACTCGCA
* * *
60742733 CCAATGCCTT-GGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
60742772 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
60742813 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60742838 CATCATTCGA
Statistics
Matches: 119, Mismatches: 17, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
39 35 0.29
40 72 0.61
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:60745095 original size:30 final size:30
Alignment explanation
Indices: 60745054--60745111 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
60745044 AATTTCACAT
* *
60745054 CTTTGGTAAAATGACCATTTTGCCCCTAGG
1 CTTTGGCAAAATGACCATTTTACCCCTAGG
60745084 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
60745112 TATTCGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGG
Found at i:60748117 original size:16 final size:16
Alignment explanation
Indices: 60748093--60748143 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
60748083 GGTTGGGGGG
60748093 AATGAAATAGAGTTGT
1 AATGAAATAGAGTTGT
* * *
60748109 AATGTAATAGAGCTCT
1 AATGAAATAGAGTTGT
* *
60748125 AATAAAATAAAGTTGT
1 AATGAAATAGAGTTGT
60748141 AAT
1 AAT
60748144 CAATAATTCA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.47, C:0.04, G:0.18, T:0.31
Consensus pattern (16 bp):
AATGAAATAGAGTTGT
Found at i:60748334 original size:28 final size:27
Alignment explanation
Indices: 60748277--60748334 Score: 62
Period size: 28 Copynumber: 2.1 Consensus size: 27
60748267 TAGTAGAAAT
* ** *
60748277 TTTTTGATAGATGATTATTATTTTTTA
1 TTTTTAATAGATGATTATTAAATTTAA
*
60748304 TTTTTAATAAGATTATTATTAAATTTAA
1 TTTTTAAT-AGATGATTATTAAATTTAA
60748332 TTT
1 TTT
60748335 AATAAATTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 7 0.28
28 18 0.72
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (27 bp):
TTTTTAATAGATGATTATTAAATTTAA
Found at i:60748459 original size:57 final size:58
Alignment explanation
Indices: 60748315--60748469 Score: 174
Period size: 57 Copynumber: 2.7 Consensus size: 58
60748305 TTTTAATAAG
* * * *
60748315 ATTATTATTAAATTTAATTTAATAAATTAATAATAAATAATTTAATCATATTTTAACATA
1 ATTATTATTAAATATAAATTAATAAA--AATAATATATAATTTAATAATATTTTAACATA
*
60748375 ATTATTATTAAATAAAAATTAAT-AAAATAATATATAATTTAATAATATTCTT-A-AT-
1 ATTATTATTAAATATAAATTAATAAAAATAATATATAATTTAATAATATT-TTAACATA
* *
60748430 ATTATTATTAAAATATGAATTAATAAAAATCATAATATAA
1 ATTATTATT-AAATATAAATTAATAAAAATAAT-ATATAA
60748470 AATATTATAA
Statistics
Matches: 83, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
55 9 0.11
56 14 0.17
57 30 0.36
58 8 0.10
59 2 0.02
60 20 0.24
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.43
Consensus pattern (58 bp):
ATTATTATTAAATATAAATTAATAAAAATAATATATAATTTAATAATATTTTAACATA
Found at i:60752026 original size:92 final size:93
Alignment explanation
Indices: 60751869--60752054 Score: 200
Period size: 92 Copynumber: 2.0 Consensus size: 93
60751859 TTAAAAAATA
* * * *
60751869 AAATATATTTAACATAATGATAAATATATAAAAAATATTTTTTATTATATAATTATTAATTTATT
1 AAATATATTTAACATAATGAT-AATATATAAAAAATATTATTGATCATATAATTAATAATTTATT
* *
60751934 T-A-TATAAATAAAGGAGTTATTAATTTC
65 TGATTATAAATAAAAGAGATATTAATTTC
* * * *
60751961 AAATATTTTTAACATTATGAT-ATATATAAAATATA-TATTGATCATATAATTACATATTTATTA
1 AAATATATTTAACATAATGATAATATATAAAAAATATTATTGATCATATAATTA-ATA-AT-TTA
60752024 TTTGATTTTATAAATAAAAGAGATATTAATT
63 TTTGA--TTATAAATAAAAGAGATATTAATT
60752055 AAAAAAACTT
Statistics
Matches: 77, Mismatches: 10, Indels: 10
0.79 0.10 0.10
Matches are distributed among these distances:
89 14 0.18
90 15 0.19
91 1 0.01
92 25 0.32
93 1 0.01
96 21 0.27
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.46
Consensus pattern (93 bp):
AAATATATTTAACATAATGATAATATATAAAAAATATTATTGATCATATAATTAATAATTTATTT
GATTATAAATAAAAGAGATATTAATTTC
Found at i:60757671 original size:40 final size:40
Alignment explanation
Indices: 60757640--60757889 Score: 292
Period size: 40 Copynumber: 6.3 Consensus size: 40
60757630 GGACTAAGAT
* *
60757640 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATATCAAA-TCCGGGTTAAGTC
* *
60757680 CCGAAGGCCTTTGTGCGAGATA-CTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATC-AAATCCGGGTTAAGTC
* *
60757720 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
* *
60757760 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
* * * *
60757800 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
* * * * *
60757840 CCGAAGGCATT-GTGTGAGTTA-CTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATATC-AAATCCGGGTTAAGTC
60757879 CCGAAGGCATT
1 CCGAAGGCATT
60757890 TGAACGAGGA
Statistics
Matches: 194, Mismatches: 13, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
39 33 0.17
40 158 0.81
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
Found at i:60757724 original size:80 final size:79
Alignment explanation
Indices: 60757587--60757889 Score: 342
Period size: 80 Copynumber: 3.8 Consensus size: 79
60757577 TTGAATGCTG
* * * * * **
60757587 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
* * *
60757650 TTGTGCGAGATACAAA
64 TCGTGCGAGTTATAAA
* *
60757666 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
60757731 CGTGCGAGTTATTAAA
65 CGTGCGAGTTA-TAAA
* * *
60757747 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
*
60757812 GTGCGAGTTGTTAAA
66 GTGCGAGTT-ATAAA
* * * * * *
60757827 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
60757890 TGAACGAGGA
Statistics
Matches: 192, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
79 36 0.19
80 145 0.76
81 11 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTATAAA
Found at i:60757803 original size:120 final size:119
Alignment explanation
Indices: 60757587--60757889 Score: 358
Period size: 120 Copynumber: 2.5 Consensus size: 119
60757577 TTGAATGCTG
* * * * * *
60757587 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
* * *
60757651 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
64 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
* *
60757707 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTC
* * * * **
60757772 GTGCGAGTTATTAAA-TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
65 GTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
* * * * *
60757827 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATT
60757890 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
119 35 0.22
120 115 0.73
121 7 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:60762231 original size:15 final size:16
Alignment explanation
Indices: 60762199--60762231 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
60762189 GACTTCATAT
*
60762199 TAATTTTAACTAGGAA
1 TAATTTTAACTAGAAA
60762215 TAATTTT-ACTAGAAA
1 TAATTTTAACTAGAAA
60762230 TA
1 TA
60762232 TTAAATAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.39
Consensus pattern (16 bp):
TAATTTTAACTAGAAA
Found at i:60770042 original size:17 final size:18
Alignment explanation
Indices: 60769991--60770043 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 18
60769981 TTCTTGATTG
* *
60769991 GTTTATTGAATTATTTTT
1 GTTTATTTATTTATTTTT
* *
60770009 GTTTATTTTTTTCTTTTT
1 GTTTATTTATTTATTTTT
*
60770027 G-TTCTTTATTTATTTTT
1 GTTTATTTATTTATTTTT
60770044 ACCTCTTCAA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 13 0.46
18 15 0.54
ACGTcount: A:0.13, C:0.04, G:0.08, T:0.75
Consensus pattern (18 bp):
GTTTATTTATTTATTTTT
Found at i:60772645 original size:27 final size:26
Alignment explanation
Indices: 60772614--60772679 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 26
60772604 TACATTTTTT
60772614 TAAACCCAATTGAATAAACCCAAACCC
1 TAAACCCAATTGAAT-AACCCAAACCC
* * *
60772641 TAAACCCGATTCTAATAACCCAAACGC
1 TAAACCCAATT-GAATAACCCAAACCC
* *
60772668 GAGACCCAATTG
1 TAAACCCAATTG
60772680 GACTCAAAGA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
27 28 0.90
28 3 0.10
ACGTcount: A:0.42, C:0.32, G:0.09, T:0.17
Consensus pattern (26 bp):
TAAACCCAATTGAATAACCCAAACCC
Found at i:60780285 original size:19 final size:19
Alignment explanation
Indices: 60780261--60780298 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
60780251 TATATATGCG
60780261 CGTAGTAAGGGAATTCCTC
1 CGTAGTAAGGGAATTCCTC
60780280 CGTAGTAAGGGAATTCCTC
1 CGTAGTAAGGGAATTCCTC
60780299 AATCGAATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (19 bp):
CGTAGTAAGGGAATTCCTC
Found at i:60792335 original size:21 final size:18
Alignment explanation
Indices: 60792292--60792327 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
60792282 CGTTTTTCCA
60792292 ACATGGTTGAAGCAGCAG
1 ACATGGTTGAAGCAGCAG
60792310 ACATGGTTGAAGCAGCAG
1 ACATGGTTGAAGCAGCAG
60792328 TAACCATGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.33, T:0.17
Consensus pattern (18 bp):
ACATGGTTGAAGCAGCAG
Found at i:60795609 original size:13 final size:13
Alignment explanation
Indices: 60795591--60795617 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
60795581 TATGATCTAT
60795591 GTTCTTTTGTTAC
1 GTTCTTTTGTTAC
60795604 GTTCTTTTGTTAC
1 GTTCTTTTGTTAC
60795617 G
1 G
60795618 GGGCTGAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.15, G:0.19, T:0.59
Consensus pattern (13 bp):
GTTCTTTTGTTAC
Found at i:60804321 original size:40 final size:39
Alignment explanation
Indices: 60804260--60804448 Score: 163
Period size: 39 Copynumber: 4.8 Consensus size: 39
60804250 CAAATCCAAT
* * *
60804260 CACCACCACAAAGCATGCGGGACTTTAAGCCCGGATATAA
1 CACCAGCACAAGGCCTGCGGGACTTT-AGCCCGGATATAA
* *
60804300 TACCCGCACAAGGCCTGCGGGACTTTAGCCCGGATATAA
1 CACCAGCACAAGGCCTGCGGGACTTTAGCCCGGATATAA
* * **
60804339 CATCAGCACGAATGCCTTTGGGAC-TTAGCCCGGATATAA
1 CACCAGCAC-AAGGCCTGCGGGACTTTAGCCCGGATATAA
* * * *
60804378 CACCAGCACAAATGCCTTCGGGA-ATTAGCCCGAATATATA
1 CACCAGCAC-AAGGCCTGCGGGACTTTAGCCCGGATATA-A
* *
60804418 TC-TCA-CACAAGGCCTGCGGGTC-TTAGCCCGG
1 -CACCAGCACAAGGCCTGCGGGACTTTAGCCCGG
60804449 TTAAAATCCT
Statistics
Matches: 124, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 18 0.15
39 70 0.56
40 35 0.28
41 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.23, T:0.19
Consensus pattern (39 bp):
CACCAGCACAAGGCCTGCGGGACTTTAGCCCGGATATAA
Found at i:60804367 original size:39 final size:39
Alignment explanation
Indices: 60804277--60804415 Score: 165
Period size: 39 Copynumber: 3.5 Consensus size: 39
60804267 ACAAAGCATG
* * * *
60804277 CGGGACTTTAAGCCCGGATATAATACCCGCACAAGGCCTG
1 CGGGACTTT-AGCCCGGATATAACACCAGCACAATGCCTT
*
60804317 CGGGACTTTAGCCCGGATATAACATCAGCACGAATGCCTT
1 CGGGACTTTAGCCCGGATATAACACCAGCAC-AATGCCTT
*
60804357 TGGGAC-TTAGCCCGGATATAACACCAGCACAAATGCCTT
1 CGGGACTTTAGCCCGGATATAACACCAGCAC-AATGCCTT
* *
60804396 CGGGA-ATTAGCCCGAATATA
1 CGGGACTTTAGCCCGGATATA
60804416 TATCTCACAC
Statistics
Matches: 87, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 67 0.77
40 20 0.23
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.20
Consensus pattern (39 bp):
CGGGACTTTAGCCCGGATATAACACCAGCACAATGCCTT
Found at i:60808004 original size:30 final size:30
Alignment explanation
Indices: 60807958--60808017 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
60807948 TTCTCGAGCC
60807958 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* *
60807988 TAGGGGCAAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAAGTGTAATTATGCAAAAGTT
60808018 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:60818652 original size:57 final size:56
Alignment explanation
Indices: 60818473--60818649 Score: 185
Period size: 57 Copynumber: 3.1 Consensus size: 56
60818463 TAGAAATGGT
* * *
60818473 GAAAATGTAGAAATTGGAAACAATTTGTAAAAT-AATTATGGTTTTCTCCAAAATGAAAT
1 GAAAATGGAGAAA-TGGAAAC-ATTTGT-AAATGAA-TATGGTTTTCTCCAAACTGAAAA
* * ** * * *
60818532 TAAAATAGAGAAACAGAAACATTTGGAAATGATTATAGTTTTCTCCAAACTGAAAA
1 GAAAATGGAGAAATGGAAACATTTGTAAATGAATATGGTTTTCTCCAAACTGAAAA
* * *
60818588 TGAAAATGGAGAAATGGAATCATTTATAAATGAATATGGCTTTCTCCAAACTGAAAA
1 -GAAAATGGAGAAATGGAAACATTTGTAAATGAATATGGTTTTCTCCAAACTGAAAA
60818645 GAAAA
1 GAAAA
60818650 ATGAAAATGA
Statistics
Matches: 96, Mismatches: 20, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
56 29 0.30
57 52 0.54
58 5 0.05
59 10 0.10
ACGTcount: A:0.47, C:0.09, G:0.16, T:0.28
Consensus pattern (56 bp):
GAAAATGGAGAAATGGAAACATTTGTAAATGAATATGGTTTTCTCCAAACTGAAAA
Found at i:60820322 original size:20 final size:20
Alignment explanation
Indices: 60820299--60820340 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
60820289 TGATTGAAAC
*
60820299 TGGACATTAAGAACCTTACT
1 TGGACATTAAAAACCTTACT
60820319 TGGACATTAAAAACCTTACT
1 TGGACATTAAAAACCTTACT
60820339 TG
1 TG
60820341 TTTTTTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (20 bp):
TGGACATTAAAAACCTTACT
Found at i:60835660 original size:9 final size:9
Alignment explanation
Indices: 60835646--60835690 Score: 90
Period size: 9 Copynumber: 5.0 Consensus size: 9
60835636 GAGTTGACTT
60835646 GAATAATTC
1 GAATAATTC
60835655 GAATAATTC
1 GAATAATTC
60835664 GAATAATTC
1 GAATAATTC
60835673 GAATAATTC
1 GAATAATTC
60835682 GAATAATTC
1 GAATAATTC
60835691 AATTCAATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.33
Consensus pattern (9 bp):
GAATAATTC
Found at i:60837942 original size:26 final size:26
Alignment explanation
Indices: 60837913--60838016 Score: 172
Period size: 26 Copynumber: 4.0 Consensus size: 26
60837903 TGGTACAAAT
60837913 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
60837939 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
60837965 TGATAATGGGTTGGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
60837991 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
60838017 AGATGAGAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.32, C:0.08, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:60841649 original size:12 final size:12
Alignment explanation
Indices: 60841632--60841662 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
60841622 AGTATTATCA
60841632 TAATATACTCTT
1 TAATATACTCTT
60841644 TAATATACTCTT
1 TAATATACTCTT
60841656 TAATATA
1 TAATATA
60841663 AAATGTGCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (12 bp):
TAATATACTCTT
Found at i:60848990 original size:48 final size:50
Alignment explanation
Indices: 60848824--60848997 Score: 173
Period size: 48 Copynumber: 3.6 Consensus size: 50
60848814 TATAATGTCA
* * * **
60848824 ATGCCATGTCCCAGACATGGTCTTACACCAGCTCATC-CAT-TAAAT--CG
1 ATGCCATGTCCCAAACATGGTCTTACACTAACT-ATCACATATACGTGCCG
* * * * *
60848871 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCCGTGTCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAACTATCACATATACGTGCCG
* *
60848921 ATGCCATGTCCCATACGTGGTCTTACACTAAC-AT-AGC-TATACGTGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAACTATCA-CATATACGTGCCG
60848969 ATGCCATGTCCCAAACATGGTCTTACACT
1 ATGCCATGTCCCAAACATGGTCTTACACT
60848998 GACACATCTC
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
46 2 0.02
47 33 0.31
48 39 0.36
49 2 0.02
50 31 0.29
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (50 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAACTATCACATATACGTGCCG
Found at i:60849109 original size:46 final size:45
Alignment explanation
Indices: 60848817--60849184 Score: 186
Period size: 46 Copynumber: 7.8 Consensus size: 45
60848807 CATAGGGTAT
* *
60848817 AATGTCAATGCCATGTCCCAGACATGGTCTTACACCAGCTCATC-CATTA
1 AATGTCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCTC--TA
*
60848866 AA--TCGATGCCATGTCCCAGACATGGTCTTACACT-GACTCTCACATA
1 AATGTCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCTCTC-TA
** * * * ** *
60848912 TCCGTGTCGATGCCATGTCCCATACGTGGTCTTACACTAACATAGCTATA
1 --AATGTCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-TCTCTCTA
** * * *
60848962 CGTGCCGATGCCATGTCCCAAACATGGTCTTACACT-GACACATCTCGT-
1 AATGTCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTC-TCTC-TA
* *
60849010 AA--TCGATGCATGTCCCAGACATGTGTTACACTTGCT-TACATCTTGA
1 AATGTCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-C-TC-T-A
* *
60849056 AA--CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTC
1 AATGTCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC-TCTA
* *
60849100 AATGTCGATGCCATGTCCCAGACATGGTTTTACACTAG--CTCTCAA
1 AATGTCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCTCTA
60849145 AATGTGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 AATGT---CGATGCATGTCCCAGACATGTCTTACACTAGC
60849185 ACACAATTAA
Statistics
Matches: 257, Mismatches: 37, Indels: 52
0.74 0.11 0.15
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 15 0.06
45 22 0.09
46 65 0.25
47 63 0.25
48 52 0.20
49 3 0.01
50 33 0.13
51 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (45 bp):
AATGTCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCTCTA
Found at i:60849136 original size:48 final size:47
Alignment explanation
Indices: 60848815--60849184 Score: 254
Period size: 47 Copynumber: 7.9 Consensus size: 47
60848805 AACATAGGGT
* *
60848815 ATAATGTCAATGCCATGTCCCAGACATGGTCTTACACCAGCTCATC-C
1 ATAATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCTC
* *
60848862 ATTAA-ATCGATGCCATGTCCCAGACATGGTCTTACACT-GACTCTCAC
1 A-TAATGTCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCTC
* * * * **
60848909 ATATCCGTGTCGATGCCATGTCCCATACGTGGTCTTACACTAACATAGCT-
1 ATA---ATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGC-TCTCTC
* * * *
60848959 ATACGTGCCGATGCCATGTCCCAAACATGGTCTTACACT-GACACATCTC
1 ATA-ATGTCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTC-TCTC
* * *
60849008 GTAA--TCGATG-CATGTCCCAGACAT-GTGTTACACTTGCT-TACATC
1 ATAATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-C-TC
* **
60849052 TTGAA-ACCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTC
1 AT-AATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-TC
*
60849098 -TCAATGTCGATGCCATGTCCCAGACATGGTTTTACACTAG--CTCTC
1 AT-AATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTC
*
60849143 AAAATGTGGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 ATAATGT---CGATGCCATGTCCCAGACATGGTCTTACACTAGC
60849185 ACACAATTAA
Statistics
Matches: 262, Mismatches: 35, Indels: 52
0.75 0.10 0.15
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 13 0.05
45 26 0.10
46 63 0.24
47 65 0.25
48 55 0.21
49 2 0.01
50 34 0.13
51 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (47 bp):
ATAATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTC
Done.