Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 192 of 322
Found at i:63148042 original size:26 final size:26
Alignment explanation
Indices: 63148004--63148061 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
63147994 CATGAAATTC
63148004 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
63148030 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
63148056 TTATCA
1 TTATCA
63148062 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:63154004 original size:61 final size:61
Alignment explanation
Indices: 63153889--63154005 Score: 144
Period size: 61 Copynumber: 1.9 Consensus size: 61
63153879 ATGTGAAATC
* * *
63153889 AACATGGCCTGGACTTCCATACACGGGCAAACCACACGCCCGTGTAGTTCTAGCAGGCTCT
1 AACACGGCCTGGACTTCCATACACGGGCAAACCACACGCCCATGTACTTCTAGCAGGCTCT
* * * * * * *
63153950 AACACGGCCTGGACTTCCTTACATGGGTAGACCACATGCCCATGTCCTTTTAGCAG
1 AACACGGCCTGGACTTCCATACACGGGCAAACCACACGCCCATGTACTTCTAGCAG
63154006 AATTGAGCAT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
61 46 1.00
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.22
Consensus pattern (61 bp):
AACACGGCCTGGACTTCCATACACGGGCAAACCACACGCCCATGTACTTCTAGCAGGCTCT
Found at i:63155803 original size:20 final size:20
Alignment explanation
Indices: 63155780--63155820 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
63155770 AAGCAGTAGC
63155780 TCATCCATATAAATAGTATT
1 TCATCCATATAAATAGTATT
63155800 TCATCCATATAAATAGTATT
1 TCATCCATATAAATAGTATT
63155820 T
1 T
63155821 ATGCTCATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.15, G:0.05, T:0.41
Consensus pattern (20 bp):
TCATCCATATAAATAGTATT
Found at i:63156088 original size:24 final size:24
Alignment explanation
Indices: 63155991--63156089 Score: 71
Period size: 24 Copynumber: 4.2 Consensus size: 24
63155981 AAGTTCTATT
* *
63155991 GAGCTG-AAACGGTAAGCTCTGAC
1 GAGCTGAAAACAGTAAGCTCTTAC
* * **
63156014 GAGTTGAGAACACCAAGCTCTTAC
1 GAGCTGAAAACAGTAAGCTCTTAC
* * *
63156038 GAGCT-AGAACGGTAAG-T-TTCAAT
1 GAGCTGAAAACAGTAAGCTCTT--AC
63156061 GAGCTGAAAACAGTAAGCTCTTAC
1 GAGCTGAAAACAGTAAGCTCTTAC
63156085 GAGCT
1 GAGCT
63156090 AATATATCGG
Statistics
Matches: 56, Mismatches: 14, Indels: 11
0.69 0.17 0.14
Matches are distributed among these distances:
21 2 0.04
22 1 0.02
23 19 0.34
24 31 0.55
25 1 0.02
26 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.21
Consensus pattern (24 bp):
GAGCTGAAAACAGTAAGCTCTTAC
Found at i:63157864 original size:24 final size:24
Alignment explanation
Indices: 63157837--63157886 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
63157827 TTTTTATGGT
63157837 CCTATAAAATGCAGACTTAGCTTC
1 CCTATAAAATGCAGACTTAGCTTC
*
63157861 CCTATAAAATGTAGACTTAGCTTC
1 CCTATAAAATGCAGACTTAGCTTC
63157885 CC
1 CC
63157887 CTTTTGATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (24 bp):
CCTATAAAATGCAGACTTAGCTTC
Found at i:63160156 original size:226 final size:226
Alignment explanation
Indices: 63159762--63160213 Score: 895
Period size: 226 Copynumber: 2.0 Consensus size: 226
63159752 AATGACAATT
63159762 TTGTCAAAAATCACTTTACAAATGTTGTTTATATAAAAACAAGCATACATTTTCTATCACCAAAC
1 TTGTCAAAAATCACTTTACAAATGTTGTTTATATAAAAACAAGCATACATTTTCTATCACCAAAC
63159827 ATCAAAATACACATAGATTCATCGATGGAAAAACCCTAAATGTTTAACAATTTTGCAAAATAGTC
66 ATCAAAATACACATAGATTCATCGATGGAAAAACCCTAAATGTTTAACAATTTTGCAAAATAGTC
63159892 CCTGGGCTAGCTAGATTAAGCTGTAACGATCTCAAAAACATAGAAATTATTAAAAACAAGACAAA
131 CCTGGGCTAGCTAGATTAAGCTGTAACGATCTCAAAAACATAGAAATTATTAAAAACAAGACAAA
63159957 AACCATACTTAAATGAGCAACAATGCCTTGG
196 AACCATACTTAAATGAGCAACAATGCCTTGG
63159988 TTGTCAAAAATCACTTTACAAATGTTGTTTATATAAAAACAAGCATACATTTTCTATCACCAAAC
1 TTGTCAAAAATCACTTTACAAATGTTGTTTATATAAAAACAAGCATACATTTTCTATCACCAAAC
63160053 ATCAAAATACACATAGATTCATCGATGGAAAAACCCTAAATGTTTAACAATTTTGCAAAATAGTC
66 ATCAAAATACACATAGATTCATCGATGGAAAAACCCTAAATGTTTAACAATTTTGCAAAATAGTC
63160118 CCTGGGCTAGCTAGATTAAGCTGTAACGATCTCAAAAACATAGAAATTATTAAAAACAAGACAAA
131 CCTGGGCTAGCTAGATTAAGCTGTAACGATCTCAAAAACATAGAAATTATTAAAAACAAGACAAA
*
63160183 AATCATACTTAAATGAGCAACAATGCCTTGG
196 AACCATACTTAAATGAGCAACAATGCCTTGG
63160214 CCAAAACTCA
Statistics
Matches: 225, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
226 225 1.00
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (226 bp):
TTGTCAAAAATCACTTTACAAATGTTGTTTATATAAAAACAAGCATACATTTTCTATCACCAAAC
ATCAAAATACACATAGATTCATCGATGGAAAAACCCTAAATGTTTAACAATTTTGCAAAATAGTC
CCTGGGCTAGCTAGATTAAGCTGTAACGATCTCAAAAACATAGAAATTATTAAAAACAAGACAAA
AACCATACTTAAATGAGCAACAATGCCTTGG
Found at i:63163267 original size:20 final size:20
Alignment explanation
Indices: 63163242--63163279 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
63163232 CATAGGCAAG
*
63163242 GTCAAAATTTTTTAGAGAGT
1 GTCAAAATTTTTAAGAGAGT
63163262 GTCAAAATTTTTAAGAGA
1 GTCAAAATTTTTAAGAGA
63163280 TTTAAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.05, G:0.18, T:0.37
Consensus pattern (20 bp):
GTCAAAATTTTTAAGAGAGT
Found at i:63166451 original size:40 final size:40
Alignment explanation
Indices: 63166396--63166472 Score: 136
Period size: 40 Copynumber: 1.9 Consensus size: 40
63166386 AAATAAAAAA
63166396 GATTTTACAAAATTATCAATGGAGCAATTTTTTAATTAAT
1 GATTTTACAAAATTATCAATGGAGCAATTTTTTAATTAAT
* *
63166436 GATTTTACAAAATTATCAATGGGGTAATTTTTTAATT
1 GATTTTACAAAATTATCAATGGAGCAATTTTTTAATT
63166473 TCTCTAAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (40 bp):
GATTTTACAAAATTATCAATGGAGCAATTTTTTAATTAAT
Found at i:63169366 original size:24 final size:24
Alignment explanation
Indices: 63169335--63169383 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
63169325 TTTTTTAAAA
63169335 TTATTTATAATATTT-ATAT-TATG
1 TTATTTATAAT-TTTGATATATATG
63169358 TTATATTATAATTTTGATATATATG
1 TTAT-TTATAATTTTGATATATATG
63169383 T
1 T
63169384 ATGAGATGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 7 0.30
24 11 0.48
25 5 0.22
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (24 bp):
TTATTTATAATTTTGATATATATG
Found at i:63169795 original size:26 final size:26
Alignment explanation
Indices: 63169766--63169873 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
63169756 TGGTACAAAT
63169766 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
63169792 TGATAGTGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
63169818 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
63169844 TAATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
63169870 TGAT
1 TGAT
63169874 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:63171568 original size:32 final size:27
Alignment explanation
Indices: 63171486--63171572 Score: 124
Period size: 27 Copynumber: 3.2 Consensus size: 27
63171476 AGGAAGCATC
*
63171486 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
*
63171513 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
63171540 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
63171567 CTGGTG
1 CTGGTG
63171573 ACTTCATCAC
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
26 7 0.13
27 47 0.85
28 1 0.02
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:63177765 original size:26 final size:25
Alignment explanation
Indices: 63177726--63177833 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 25
63177716 TGGTACAAAT
63177726 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
*
63177752 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
*
63177778 TGATAATGGGTTAGGTAAATGCTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
63177804 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
63177830 TGAT
1 TGAT
63177834 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
25 4 0.05
26 69 0.92
27 2 0.03
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.35
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:63177804 original size:52 final size:52
Alignment explanation
Indices: 63177726--63177833 Score: 180
Period size: 52 Copynumber: 2.1 Consensus size: 52
63177716 TGGTACAAAT
*
63177726 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGCTCCATGATAATGGATTAGGTAAATATTCCA
* * *
63177778 TGATAATGGGTTAGGTAAATGCTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGCTCCATGATAATGGATTAGGTAAATATTCCA
63177830 TGAT
1 TGAT
63177834 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.35
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGCTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:63178548 original size:242 final size:242
Alignment explanation
Indices: 63178123--63178605 Score: 948
Period size: 242 Copynumber: 2.0 Consensus size: 242
63178113 GAGCATTTAG
*
63178123 TCATGAATTAAAATGAAGGAAATGGTTGTTGTTTCATGTTCTTTTGATGAAAAATGGAAGATAGG
1 TCATGAATTAAAATGAAAGAAATGGTTGTTGTTTCATGTTCTTTTGATGAAAAATGGAAGATAGG
63178188 TGAAGTTGAGCCAAACAAATAAGCATGCATGTGCCTTAGTTGTTAAAGGGAAAAATCGGCTAACA
66 TGAAGTTGAGCCAAACAAATAAGCATGCATGTGCCTTAGTTGTTAAAGGGAAAAATCGGCTAACA
63178253 TGTTGTGCTTTAAAATGATGAATGGAGATTATACTTAAGTAAAATCATAGATATGTGATTATTCA
131 TGTTGTGCTTTAAAATGATGAATGGAGATTATACTTAAGTAAAATCATAGATATGTGATTATTCA
63178318 TTGGTGATATACATGTTTAAATAACATGCATGCAAGTTATGTGTGAT
196 TTGGTGATATACATGTTTAAATAACATGCATGCAAGTTATGTGTGAT
*
63178365 TCATGAATTAAAATGAAAGAAATTGTTGTTGTTTCATGTTCTTTTGATGAAAAATGGAAGATAGG
1 TCATGAATTAAAATGAAAGAAATGGTTGTTGTTTCATGTTCTTTTGATGAAAAATGGAAGATAGG
63178430 TGAAGTTGAGCCAAACAAATAAGCATGCATGTGCCTTAGTTGTTAAAGGGAAAAATCGGCTAACA
66 TGAAGTTGAGCCAAACAAATAAGCATGCATGTGCCTTAGTTGTTAAAGGGAAAAATCGGCTAACA
63178495 TGTTGTGCTTTAAAATGATGAATGGAGATTATACTTAAGTAAAATCATAGATATGTGATTATTCA
131 TGTTGTGCTTTAAAATGATGAATGGAGATTATACTTAAGTAAAATCATAGATATGTGATTATTCA
63178560 TTGGTGATATACATGTTTAAATAACATGCATGCAAGTTATGTGTGA
196 TTGGTGATATACATGTTTAAATAACATGCATGCAAGTTATGTGTGA
63178606 AAGAATGATT
Statistics
Matches: 239, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
242 239 1.00
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.34
Consensus pattern (242 bp):
TCATGAATTAAAATGAAAGAAATGGTTGTTGTTTCATGTTCTTTTGATGAAAAATGGAAGATAGG
TGAAGTTGAGCCAAACAAATAAGCATGCATGTGCCTTAGTTGTTAAAGGGAAAAATCGGCTAACA
TGTTGTGCTTTAAAATGATGAATGGAGATTATACTTAAGTAAAATCATAGATATGTGATTATTCA
TTGGTGATATACATGTTTAAATAACATGCATGCAAGTTATGTGTGAT
Found at i:63179339 original size:40 final size:39
Alignment explanation
Indices: 63179263--63179340 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
63179253 AAAAGTCGAA
*
63179263 AAGCCGAAATGCCGAAAACCGGTATTTTGTAGATTTGCG
1 AAGCCGAAATGCCGAAAACCGGTATTTTGGAGATTTGCG
*
63179302 AAGCCGAAATGCCGAAAAGTCGGTATTTTGG-GAATTTGC
1 AAGCCGAAATGCCGAAAA-CCGGTATTTTGGAG-ATTTGC
63179341 TAGTGTGCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
39 19 0.54
40 16 0.46
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.26
Consensus pattern (39 bp):
AAGCCGAAATGCCGAAAACCGGTATTTTGGAGATTTGCG
Found at i:63179777 original size:27 final size:26
Alignment explanation
Indices: 63179737--63179876 Score: 172
Period size: 27 Copynumber: 5.2 Consensus size: 26
63179727 AGGAAGCGTC
*
63179737 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
63179764 CTGGTGGCTCTGCCACATATATATGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
63179791 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
63179818 TTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
63179845 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
63179872 CTGGT
1 CTGGT
63179877 TACTTTGTCA
Statistics
Matches: 97, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 10 0.10
27 85 0.88
28 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:63179823 original size:54 final size:53
Alignment explanation
Indices: 63179737--63179876 Score: 217
Period size: 54 Copynumber: 2.6 Consensus size: 53
63179727 AGGAAGCGTC
63179737 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATATGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATATGTT
* *
63179791 CTGGTGGCTATGCCACGATTATCTGATTTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATATGTT
* *
63179845 CTGGTGGCTCTGCCACAATATCTGTATCTGGT
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGT
63179877 TACTTTGTCA
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 7 0.09
54 72 0.91
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATATGTT
Found at i:63179888 original size:27 final size:26
Alignment explanation
Indices: 63179737--63179895 Score: 140
Period size: 27 Copynumber: 5.9 Consensus size: 26
63179727 AGGAAGCGTC
* * *
63179737 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* *
63179764 CTGGTGGCTCTGCCACATATATATGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
* * *
63179791 CTGGTGGCTATGCCACGATTATCTGATT
1 CTGGTGACTCTGCCAC-AATATCTG-TT
*
63179819 -TGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
63179845 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
* * *
63179872 CTGGTTACTTTGTCACAATATCTG
1 CTGGTGACTCTGCCACAATATCTG
63179896 GCAGCCTCGC
Statistics
Matches: 114, Mismatches: 12, Indels: 12
0.83 0.09 0.09
Matches are distributed among these distances:
26 11 0.10
27 99 0.87
28 4 0.04
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:63190842 original size:48 final size:48
Alignment explanation
Indices: 63190762--63190882 Score: 152
Period size: 48 Copynumber: 2.5 Consensus size: 48
63190752 GTCAAGTCCT
* ** * *
63190762 AGACATAGTCTTACACGAAATCACATATCGATGCCAATGCTATATCCC
1 AGACATAGTCTTACATGGGATCACATACCGATGCCAATGCCATATCCC
* * * * *
63190810 ATATATGGTCTTACTTGGGATCACATACCGATGCCAATGCCATGTCCC
1 AGACATAGTCTTACATGGGATCACATACCGATGCCAATGCCATATCCC
63190858 AGACATAGTCTTACATGGGATCACA
1 AGACATAGTCTTACATGGGATCACA
63190883 ATGCCATGGC
Statistics
Matches: 59, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (48 bp):
AGACATAGTCTTACATGGGATCACATACCGATGCCAATGCCATATCCC
Found at i:63190924 original size:37 final size:37
Alignment explanation
Indices: 63190844--63190944 Score: 105
Period size: 37 Copynumber: 2.7 Consensus size: 37
63190834 ATACCGATGC
* * *
63190844 CAATGCCATGTCCCAGAC-ATAGTCTTACATGGGATCA
1 CAATGCCATGGCCCAG-CTATGGTCTTACATGGCATCA
* *
63190881 CAATGCCATGGCCCAGCTATGGTCTTACATGTCATTA
1 CAATGCCATGGCCCAGCTATGGTCTTACATGGCATCA
* * * *
63190918 CGATGCCATAGTCCTGCTATGGTCTTA
1 CAATGCCATGGCCCAGCTATGGTCTTA
63190945 TACGTACTCA
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
36 1 0.02
37 53 0.98
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (37 bp):
CAATGCCATGGCCCAGCTATGGTCTTACATGGCATCA
Found at i:63196368 original size:44 final size:42
Alignment explanation
Indices: 63196271--63196419 Score: 144
Period size: 44 Copynumber: 3.5 Consensus size: 42
63196261 GGTGCTTTGA
* * *
63196271 ATATCTGCACACTTAGTGCTACAACAATTAGCCGAAGCTAGAACG
1 ATATC-GCACACTTAGTGCCAC-TCAATTAGCCGAAGCTAG-TCG
63196316 AT-TCCGCACACTTAGTGCCATCTCAATTAGCCGAAGCTAAGTCG
1 ATAT-CGCACACTTAGTGCCA-CTCAATTAGCCGAAGCT-AGTCG
* **
63196360 GTATCGCACACTTAGTG-C-CTC-ATATAGCCGAAGCTAGTTT
1 ATATCGCACACTTAGTGCCACTCAAT-TAGCCGAAGCTAGTCG
*
63196400 AAATCGCACACTTAGTGCCA
1 ATATCGCACACTTAGTGCCA
63196420 AATACTATTG
Statistics
Matches: 89, Mismatches: 8, Indels: 17
0.78 0.07 0.15
Matches are distributed among these distances:
40 20 0.22
41 15 0.17
43 1 0.01
44 46 0.52
45 7 0.08
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (42 bp):
ATATCGCACACTTAGTGCCACTCAATTAGCCGAAGCTAGTCG
Found at i:63204719 original size:47 final size:47
Alignment explanation
Indices: 63204668--63204796 Score: 161
Period size: 47 Copynumber: 2.7 Consensus size: 47
63204658 TTAGGATTCT
* * *
63204668 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGGATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCA
* * * *
63204715 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* *
63204762 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGGATGTGAAAGTGTATATATGTGATAAG
63204797 TCCCGAAGGG
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
46 1 0.01
47 68 0.99
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.27
Consensus pattern (47 bp):
ATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:63206979 original size:38 final size:38
Alignment explanation
Indices: 63206915--63206989 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
63206905 AATCCGAGTT
*
63206915 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
63206953 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
63206990 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:63207107 original size:40 final size:40
Alignment explanation
Indices: 63207047--63207443 Score: 483
Period size: 40 Copynumber: 9.9 Consensus size: 40
63207037 CTCGATGATG
* * *
63207047 ATCCGGGCTAAGTCCAGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGTGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
** * *
63207087 ATCCGTGCTAAACCCCGAAGAGCATTCATGCTATTGATGT
1 ATCCGTGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* * *
63207127 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGTGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
** * *
63207167 ATCCGTGCTAAACCCCGAAGAGCATTCATGCTATTGATGT
1 ATCCGTGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* *
63207207 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGTGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* *
63207247 ATCCAG-GCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCC-GTGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
** *
63207287 ATCCGTGCTAAACCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGTGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* *
63207327 ATCCAG-GCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCC-GTGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
** * *
63207367 ATCCGTGCTAAACCCCGAAGAGCATTCATGCTGGTGTTAT
1 ATCCGTGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* * * *
63207407 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGTGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
63207444 CGTGTATTCG
Statistics
Matches: 303, Mismatches: 50, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.01
40 299 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
ATCCGTGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
Found at i:63208840 original size:85 final size:85
Alignment explanation
Indices: 63208697--63209045 Score: 680
Period size: 85 Copynumber: 4.1 Consensus size: 85
63208687 GGCCGGCCAT
63208697 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
63208762 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
63208782 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
63208847 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
63208867 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
63208932 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
63208952 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
*
63209017 GTTAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
63209037 GGGCATGGG
1 GAGCATGGG
63209046 CAATAAAATA
Statistics
Matches: 262, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 262 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:63217753 original size:45 final size:45
Alignment explanation
Indices: 63217692--63217779 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
63217682 CCAAAACATG
*
63217692 TGTCACATACATCATGAACTCAGACTACAACTCAATGAGCTCACA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGCTCACA
* *
63217737 TGTCACATATATCATGAACTCAGACCATAACTCAATGAGCTCA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGCTCA
63217780 TATTTCAAGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.38, C:0.27, G:0.11, T:0.24
Consensus pattern (45 bp):
TGTCACATACATCATGAACTCAGACCACAACTCAATGAGCTCACA
Found at i:63223124 original size:40 final size:40
Alignment explanation
Indices: 63223035--63223298 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
63223025 TTGAATGATG
* *
63223035 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
63223074 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
63223114 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63223153 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63223193 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
63223233 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
63223274 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63223299 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 53 0.26
40 143 0.69
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63223316 original size:120 final size:118
Alignment explanation
Indices: 63223035--63223331 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
63223025 TTGAATGATG
* *
63223035 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
63223095 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
63223153 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
63223218 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
63223274 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
63223332 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:63230832 original size:40 final size:40
Alignment explanation
Indices: 63230743--63231006 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
63230733 TTGAATGATG
* *
63230743 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
63230782 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
63230822 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63230861 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63230901 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
63230941 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
63230982 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63231007 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 53 0.26
40 143 0.69
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63231024 original size:120 final size:118
Alignment explanation
Indices: 63230743--63231039 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
63230733 TTGAATGATG
* *
63230743 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
63230803 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
63230861 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
63230926 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
63230982 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
63231040 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:63234038 original size:23 final size:23
Alignment explanation
Indices: 63234011--63234054 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
63234001 CATGTTAATA
63234011 ATAAATGCAATC-ATCATGCATTC
1 ATAAAT-CAATCAATCATGCATTC
*
63234034 ATAAATCATTCAATCATGCAT
1 ATAAATCAATCAATCATGCAT
63234055 ATTAAGGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (23 bp):
ATAAATCAATCAATCATGCATTC
Found at i:63244113 original size:47 final size:47
Alignment explanation
Indices: 63244055--63245060 Score: 1904
Period size: 47 Copynumber: 21.4 Consensus size: 47
63244045 CAGCCAAGAC
63244055 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
63244102 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63244149 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63244196 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63244243 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63244290 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63244337 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63244384 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63244431 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63244478 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63244525 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63244572 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63244619 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63244666 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63244713 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63244760 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63244807 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
63244854 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
63244901 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
63244948 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
63244995 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
63245042 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
63245061 TCCCGAAGGG
Statistics
Matches: 942, Mismatches: 17, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 942 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:63245235 original size:37 final size:37
Alignment explanation
Indices: 63245179--63245257 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
63245169 CCGAGCTCTA
* *
63245179 AAGACCCGATGACTACGTGTGCGA-ATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTG-GAGATTATGTCCGGGT
*
63245216 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
63245253 AAGAC
1 AAGAC
63245258 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 2 0.05
37 36 0.95
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:63251554 original size:29 final size:29
Alignment explanation
Indices: 63251520--63251593 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
63251510 TAATCAACCG
*
63251520 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
63251549 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
63251578 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
63251594 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:63254100 original size:27 final size:27
Alignment explanation
Indices: 63254070--63254172 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 27
63254060 ATTATTGAAA
* *
63254070 TACCCTCGACTTGTAAAATTACCAATG
1 TACCCTCGATTTATAAAATTACCAATG
* ** *
63254097 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCAATG
* ** *
63254124 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCAATG
*
63254151 TACCCTCGATTTATAGAATTAC
1 TACCCTCGATTTATAAAATTAC
63254173 TGTTTTACCC
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.30, C:0.24, G:0.10, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAATG
Found at i:63254177 original size:27 final size:27
Alignment explanation
Indices: 63254097--63254227 Score: 190
Period size: 27 Copynumber: 4.9 Consensus size: 27
63254087 ATTACCAATG
* *
63254097 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
63254124 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
63254151 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
63254178 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
63254205 TATCCTCGATTTACACAATTACT
1 TACCCTCGATTTACAGAATTACT
63254228 AAAATACCCT
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:63254205 original size:54 final size:54
Alignment explanation
Indices: 63254070--63254254 Score: 199
Period size: 54 Copynumber: 3.4 Consensus size: 54
63254060 ATTATTGAAA
* ** ** * *
63254070 TACCCTCGACTTGTAAAATTACCAATGTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
63254124 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
* * * * * * ****
63254178 TACCCTTGATTTACAGAATTACTGTTTTATCCTCGATTTACACAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
* *
63254232 TACCCTTGGTTTACAAAATTACC
1 TACCCTCGATTTACAAAATTACC
63254255 AAAATACCCT
Statistics
Matches: 111, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 111 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
Found at i:63254252 original size:81 final size:81
Alignment explanation
Indices: 63254097--63254253 Score: 188
Period size: 81 Copynumber: 1.9 Consensus size: 81
63254087 ATTACCAATG
* ****
63254097 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
* *
63254162 TATAGAATTACTGTTT
66 TACAAAATTACTGTTT
* * * * * * *
63254178 TACCCTTGATTTACAGAATTACTGTTTTATCCTCGATTTACACAATTACTAAAATACCCTTGGTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
63254243 TACAAAATTAC
66 TACAAAATTAC
63254254 CAAAATACCC
Statistics
Matches: 62, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 62 1.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
TACAAAATTACTGTTT
Found at i:63254330 original size:80 final size:81
Alignment explanation
Indices: 63254221--63254423 Score: 259
Period size: 80 Copynumber: 2.5 Consensus size: 81
63254211 CGATTTACAC
**
63254221 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCA-ATCAGTAAAATTACCAA
1 AATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCT-AGAT-AGTAAAATTACCAA
63254284 AATACC-CTAGTCTGTAA
64 AATACCACTAGTCTGTAA
* * *
63254301 AATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAAA
1 AATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGATAGTAAAATTACCAAAA
* * *
63254366 TACCACTGGTTTGTGA
66 TACCACTAGTCTGTAA
** **
63254382 AATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACC
1 AATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACC
63254424 ACTGATTTAC
Statistics
Matches: 106, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
80 56 0.53
81 50 0.47
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
AATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGATAGTAAAATTACCAAAA
TACCACTAGTCTGTAA
Found at i:63254369 original size:54 final size:54
Alignment explanation
Indices: 63254271--63254451 Score: 226
Period size: 54 Copynumber: 3.4 Consensus size: 54
63254261 CCCTCAATCA
* * *
63254271 GTAAAATTACCAAAATA-CCCTAG-TCTGTAAAATTGCTAAAATACCCCTGGTTT
1 GTAAAATTACCAAAATACCCCTAGAT-TGTAAAATTACCAAAATACCACTGGTTT
63254324 GTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAAATACCACTGGTTT
1 GTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAAATACCACTGGTTT
* * * *
63254378 GTGAAATTACCGAAATACCCTTA-ATTTGTAAAATTACCAAAATACCACTGATTT
1 GTAAAATTACCAAAATACCCCTAGA-TTGTAAAATTACCAAAATACCACTGGTTT
**
63254432 ACAAAATTA-CAGAAATACCC
1 GTAAAATTACCA-AAATACCC
63254452 TTGACTTTCT
Statistics
Matches: 113, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
53 19 0.17
54 93 0.82
55 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.28
Consensus pattern (54 bp):
GTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAAATACCACTGGTTT
Found at i:63254423 original size:81 final size:81
Alignment explanation
Indices: 63254246--63254423 Score: 227
Period size: 81 Copynumber: 2.2 Consensus size: 81
63254236 CTTGGTTTAC
* *
63254246 AAAATTACCAAAATA-CCCTCAATCAGTAAAATTACCAAAATACCCTAGTCTGTAAAATTGCTAA
1 AAAATTACCAAAATACCCCTCAATCAGTAAAATTACCAAAATACCCTAGTCTGTAAAATTACCAA
**
63254310 AATACCCCTGGTTTGT
66 AATACCCCTAATTTGT
* * * *
63254326 AAAATTACCAAAATACCCCT-AGAT-TGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACC
1 AAAATTACCAAAATACCCCTCA-ATCAGTAAAATTACCAAAATACC-CTAGTCTGTAAAATTACC
* *
63254389 GAAATACCCTTAATTTGT
64 AAAATACCCCTAATTTGT
63254407 AAAATTACCAAAATACC
1 AAAATTACCAAAATACC
63254424 ACTGATTTAC
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
80 35 0.41
81 50 0.59
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTCAATCAGTAAAATTACCAAAATACCCTAGTCTGTAAAATTACCAA
AATACCCCTAATTTGT
Found at i:63254431 original size:27 final size:26
Alignment explanation
Indices: 63254221--63254479 Score: 200
Period size: 27 Copynumber: 9.6 Consensus size: 26
63254211 CGATTTACAC
* * **
63254221 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCC-TGATTTGTAA
* **
63254248 AATTACCAAAATACCCTCAATCAGTAA
1 AATTACCAAAATACCCT-GATTTGTAA
*
63254275 AATTACCAAAATACCCT-AGTCTGTAA
1 AATTACCAAAATACCCTGA-TTTGTAA
* * *
63254301 AATTGCTAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATA-CCCTGATTTGTAA
63254328 AATTACCAAAATACCCCTAGA-TTGTAA
1 AATTACCAAAATA-CCCT-GATTTGTAA
* *
63254355 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACC-CTGATTTGTAA
* *
63254382 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCC-TGATTTGTAA
**
63254409 AATTACCAAAATACCACTGATTTACAA
1 AATTACCAAAATACC-CTGATTTGTAA
*
63254436 AATTA-CAGAAATACCCTTGACTTTCTAAA
1 AATTACCA-AAATACCC-TGA-TTTGT-AA
**
63254465 AATTATAAAAATACC
1 AATTACCAAAATACC
63254480 ATTGGTTTAC
Statistics
Matches: 190, Mismatches: 28, Indels: 26
0.78 0.11 0.11
Matches are distributed among these distances:
25 1 0.01
26 25 0.13
27 144 0.76
28 5 0.03
29 14 0.07
30 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCTGATTTGTAA
Found at i:63254452 original size:54 final size:53
Alignment explanation
Indices: 63254212--63254509 Score: 215
Period size: 54 Copynumber: 5.5 Consensus size: 53
63254202 TTTTATCCTC
* ** **
63254212 GATTTACACAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACC-CT
1 GATTTACAAAATTAC-AAAATACCCTTAATTTGTAAAATTACCAAAATACCACT
* * * * * * * * *
63254265 CAATCAGTAAAATTACCAAAATACCC-TAGTCTGTAAAATTGCTAAAATACCCCT
1 GATTTA-CAAAATTA-CAAAATACCCTTAATTTGTAAAATTACCAAAATACCACT
* ** *
63254319 GGTTTGTAAAATTACCAAAATACCCCTAGA-TTGTAAAATTACCAAAATACCACT
1 GATTTACAAAATTA-CAAAATACCCTTA-ATTTGTAAAATTACCAAAATACCACT
* *** *
63254373 GGTTTGTGAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCACT
1 GATTTACAAAATTA-CAAAATACCCTTAATTTGTAAAATTACCAAAATACCACT
* * ** *
63254427 GATTTACAAAATTACAGAAATACCCTTGACTTTCTAAAAATTATAAAAATACCATT
1 GATTTACAAAATTACA-AAATACCCTT-AATTTGT-AAAATTACCAAAATACCACT
* *
63254483 GGTTTACAAAATTACTGAAATACCCTT
1 GATTTACAAAATTAC-AAAATACCCTT
63254510 GGTTTATAGA
Statistics
Matches: 199, Mismatches: 36, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
53 43 0.22
54 109 0.55
55 6 0.03
56 41 0.21
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (53 bp):
GATTTACAAAATTACAAAATACCCTTAATTTGTAAAATTACCAAAATACCACT
Found at i:63254503 original size:27 final size:27
Alignment explanation
Indices: 63254214--63254529 Score: 127
Period size: 27 Copynumber: 11.7 Consensus size: 27
63254204 TTATCCTCGA
* * *
63254214 TTTACACAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCATTGG
* **
63254241 TTTACAAAATTACCAAAATACC-CTCA
1 TTTACAAAATTACCAAAATACCATTGG
* * * * *
63254267 ATCAGTAAAATTACCAAAATACC-CTAG
1 TTTA-CAAAATTACCAAAATACCATTGG
* ** * * **
63254294 TCTGTAAAATTGCTAAAATACCCCTGG
1 TTTACAAAATTACCAAAATACCATTGG
** ** *
63254321 TTTGTAAAATTACCAAAATACCCCTAG
1 TTTACAAAATTACCAAAATACCATTGG
* ** *
63254348 ATTGTAAAATTACCAAAATACCACTGG
1 TTTACAAAATTACCAAAATACCATTGG
*** * * **
63254375 TTTGTGAAATTACCGAAATACCCTTAA
1 TTTACAAAATTACCAAAATACCATTGG
** * *
63254402 TTTGTAAAATTACCAAAATACCACTGA
1 TTTACAAAATTACCAAAATACCATTGG
* *
63254429 TTTACAAAATTA-CAGAAATACCCTTGAC
1 TTTACAAAATTACCA-AAATACCATTG-G
**
63254457 TTT-CTAAAAATTATAAAAATACCATTGG
1 TTTAC--AAAATTACCAAAATACCATTGG
** *
63254485 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCATTGG
* * *
63254512 TTTATAGATTTACCAAAA
1 TTTACAAAATTACCAAAA
63254530 CACCCTTGTA
Statistics
Matches: 228, Mismatches: 53, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
26 21 0.09
27 182 0.80
28 6 0.03
29 18 0.08
30 1 0.00
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCATTGG
Found at i:63254632 original size:27 final size:27
Alignment explanation
Indices: 63254555--63254632 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
63254545 AAATGACTAA
* * *
63254555 AATACCCCTAT-TAGGTAAAAAGACTGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
63254582 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
63254609 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
63254633 GAATATGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 1 0.02
27 39 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:63256816 original size:46 final size:46
Alignment explanation
Indices: 63256749--63256920 Score: 206
Period size: 46 Copynumber: 3.7 Consensus size: 46
63256739 AACCCGCCCT
* *
63256749 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
* * *
63256795 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCA
* * * *
63256843 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
63256888 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
63256921 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 2 0.02
46 60 0.57
47 28 0.27
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCA
Found at i:63256861 original size:93 final size:93
Alignment explanation
Indices: 63256754--63256924 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
63256744 GCCCTTAAGT
* * *
63256754 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63256819 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
63256847 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63256912 CGAGTTCGGATGC
66 CGAGTTCGGATGC
63256925 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:63258220 original size:25 final size:24
Alignment explanation
Indices: 63258186--63258242 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
63258176 GGATATTACA
*
63258186 CCCCAATTTACCAAAAAGGGCTTTG
1 CCCCAGTTTACC-AAAAGGGCTTTG
* *
63258211 CCCCAGTTTATCAAACGGGCTTTG
1 CCCCAGTTTACCAAAAGGGCTTTG
63258235 CCCCAGTT
1 CCCCAGTT
63258243 ATTAAAAGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 19 0.66
25 10 0.34
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.26
Consensus pattern (24 bp):
CCCCAGTTTACCAAAAGGGCTTTG
Found at i:63258255 original size:24 final size:24
Alignment explanation
Indices: 63258199--63258255 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
63258189 CAATTTACCA
63258199 AAAAGGGCTTTGCCCCAGTTTATC
1 AAAAGGGCTTTGCCCCAGTTTATC
* *
63258223 AAACGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
63258246 AAAAGAGGCT
1 AAAAG-GGCT
63258256 AGGCCTCCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 8 0.28
24 21 0.72
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:63258600 original size:31 final size:31
Alignment explanation
Indices: 63258461--63258601 Score: 219
Period size: 31 Copynumber: 4.5 Consensus size: 31
63258451 CGTTTACAGT
*
63258461 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
63258492 AAAGGCTTCGGCCTAATGATATAATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
63258523 TAAGGCTTCGCCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
63258554 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
63258585 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
63258602 AACCGTTAAA
Statistics
Matches: 101, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 101 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:63260953 original size:54 final size:54
Alignment explanation
Indices: 63260893--63261077 Score: 208
Period size: 54 Copynumber: 3.4 Consensus size: 54
63260883 CTCAACTTGT
* *
63260893 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTAC
1 AAAATTACCAAATTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTAC
* *** *
63260947 AGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTAC
1 AAAATTACCAAATTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTAC
**** * * *** *
63261001 AAAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAATTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTAC
*
63261055 AAAATTACCAAAATACCCTCGAT
1 AAAATTACCAAATTACCCTCGAT
63261078 CAGTAAAATT
Statistics
Matches: 110, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 110 1.00
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (54 bp):
AAAATTACCAAATTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTAC
Found at i:63261044 original size:27 final size:27
Alignment explanation
Indices: 63260876--63261317 Score: 189
Period size: 27 Copynumber: 16.3 Consensus size: 27
63260866 TCAATTATTG
* * * *
63260876 AAATACCCTCAACTTGTAAAATTACCA
1 AAATACCCTCGATTTATAAAATTACTA
* * *
63260903 AAGTACCCTCGATTTATAGAATTACCA
1 AAATACCCTCGATTTATAAAATTACTA
*** * * * **
63260930 TTTTACCCTTGATTTACAGAATTACCG
1 AAATACCCTCGATTTATAAAATTACTA
*** * *
63260957 TTTTACCCTCGATTTATAGAATTACTG
1 AAATACCCTCGATTTATAAAATTACTA
*** * * *
63260984 TTTTACCCTTGATTTACAAAATTACTG
1 AAATACCCTCGATTTATAAAATTACTA
*** *
63261011 TTTTACCCTCGATTTACAAAATTACTA
1 AAATACCCTCGATTTATAAAATTACTA
* * * *
63261038 AAATACCCTTGGTTTACAAAATTACCA
1 AAATACCCTCGATTTATAAAATTACTA
* *
63261065 AAATACCCTCGA-TCAGTAAAATTACCA
1 AAATACCCTCGATTTA-TAAAATTACTA
* * * * *
63261092 AAATACTCTAG-TCTGTAAAATTGCTA
1 AAATACCCTCGATTTATAAAATTACTA
* * *
63261118 AAATACCC-CTGGTTTGTAAAATTACCA
1 AAATACCCTC-GATTTATAAAATTACTA
* * *
63261145 AAATACCC-CTAGTTTGTAAAATTACCA
1 AAATACCCTCGA-TTTATAAAATTACTA
* * * * *
63261172 AGATACCACTAG-TTTGTGAAATTACTG
1 AAATACC-CTCGATTTATAAAATTACTA
* * *
63261199 AAATACCCTCAATTTGTAAAATTACCA
1 AAATACCCTCGATTTATAAAATTACTA
*
63261226 AAATACCC-CTGATTTATAAAATTACAA
1 AAATACCCTC-GATTTATAAAATTACTA
*
63261253 AAATACCCAT-GACTTTCTAAAAATTA-TAA
1 AAATACCC-TCGA-TTTAT-AAAATTACT-A
* * * * *
63261282 AAATACCATTGGTTTACAAAATTACTG
1 AAATACCCTCGATTTATAAAATTACTA
63261309 AAATACCCT
1 AAATACCCT
63261318 TGGTTTGTAG
Statistics
Matches: 333, Mismatches: 66, Indels: 32
0.77 0.15 0.07
Matches are distributed among these distances:
26 22 0.07
27 285 0.86
28 10 0.03
29 16 0.05
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATACCCTCGATTTATAAAATTACTA
Found at i:63261120 original size:26 final size:27
Alignment explanation
Indices: 63261028--63261260 Score: 222
Period size: 27 Copynumber: 8.7 Consensus size: 27
63261018 CTCGATTTAC
* * * **
63261028 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
63261055 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* *
63261082 AAAATTACCAAAATA-CTCTAGTCTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* * *
63261108 AAAATTGCTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
63261135 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
63261162 AAAATTACCAAGATACCACTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* ** *
63261189 GAAATTACTGAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACCCCT-AGTTTGT
*
63261216 AAAATTACCAAAATACCCCT-GATTTAT
1 AAAATTACCAAAATACCCCTAG-TTTGT
*
63261243 AAAATTACAAAAATACCC
1 AAAATTACCAAAATACCC
63261261 ATGACTTTCT
Statistics
Matches: 169, Mismatches: 32, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
26 24 0.14
27 141 0.83
28 4 0.02
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:63261223 original size:81 final size:81
Alignment explanation
Indices: 63261028--63261259 Score: 256
Period size: 81 Copynumber: 2.9 Consensus size: 81
63261018 CTCGATTTAC
* ** ** **
63261028 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGATCAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCT-GATTTGTAAAATTACCA
*
63261092 AAATA-CTCTAGTCTGT
65 AAATACCACTAGTCTGT
* **
63261108 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCA
1 AAAATTACTAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTGA-TTTGTAAAATTACCA
* *
63261172 AGATACCACTAGTTTGT
65 AAATACCACTAGTCTGT
* * * *
63261189 GAAATTACTGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTATAAAATTACAA
1 AAAATTACTAAAATACCCCT-AATTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCA
63261253 AAATACC
65 AAATACC
63261260 CATGACTTTC
Statistics
Matches: 130, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
79 1 0.01
80 59 0.45
81 69 0.53
82 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAA
AATACCACTAGTCTGT
Found at i:63261407 original size:27 final size:27
Alignment explanation
Indices: 63261364--63261437 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
63261354 AAATGACTAA
* *
63261364 AATACCCTTATTA-GGTAAAAAGACTGT
1 AATACCCCTA-TAGGGTAAAAAGACCGT
**
63261391 AA-AGCCCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCTATAGGGTAAAAAGACCGT
*
63261418 AATACCCCTATATGGTAAAA
1 AATACCCCTATAGGGTAAAA
63261438 TGATGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (27 bp):
AATACCCCTATAGGGTAAAAAGACCGT
Found at i:63262520 original size:31 final size:31
Alignment explanation
Indices: 63262485--63262594 Score: 186
Period size: 31 Copynumber: 3.5 Consensus size: 31
63262475 CGTTTACAGT
*
63262485 AAAGGCTTCGGCCCAATGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGG
63262516 AAAGGCTTCGGCCCAGTGATATGATTTAT-G
1 AAAGGCTTCGGCCCAGTGATATGATTTATGG
*
63262546 ATAAGGCTTCGGCCCAGTGATATGATTTATGA
1 A-AAGGCTTCGGCCCAGTGATATGATTTATGG
63262578 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
63262595 AGCCGTTAAA
Statistics
Matches: 75, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
30 2 0.03
31 72 0.96
32 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGG
Found at i:63267442 original size:42 final size:43
Alignment explanation
Indices: 63267381--63267494 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 43
63267371 TGAGATTTAT
* * *
63267381 GTGTAAGACCATGTTTGGGACA-TCGGCATC-ATATATGATTTC
1 GTGTAAGACCATATCTGGGACAGT-GGCATCGATATATGATTAC
* *
63267423 GTGTAAGACCCTATCTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCATATCTGGGACAGTGGCATCGATATATGATTAC
* *
63267466 ATGTAAGACCAGATCTGGGAC-GTTGGCAT
1 GTGTAAGACCATATCTGGGACAG-TGGCAT
63267495 TATACGAGCT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 26 0.43
43 35 0.57
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATATCTGGGACAGTGGCATCGATATATGATTAC
Found at i:63273782 original size:50 final size:50
Alignment explanation
Indices: 63273657--63273787 Score: 140
Period size: 49 Copynumber: 2.6 Consensus size: 50
63273647 TAGGGTATGA
* *
63273657 TGCCGATGCTATGTCCCAGACATGGTCTTACACTGGCTATCGAGATCGAG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGAGATCCAG
*** ** * ** *
63273707 -GTTTATGCCATGTCCTGGACATGGTCTTACACTGGCTCTC-ATCTCTCTG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGAGATC-CAG
63273756 TGCCGATGCCATGTCCCAGACATGGTCTTACA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACA
63273788 TTGACATATC
Statistics
Matches: 63, Mismatches: 16, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
48 3 0.05
49 34 0.54
50 26 0.41
ACGTcount: A:0.19, C:0.28, G:0.23, T:0.30
Consensus pattern (50 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGAGATCCAG
Found at i:63277409 original size:39 final size:39
Alignment explanation
Indices: 63277357--63277775 Score: 505
Period size: 39 Copynumber: 10.7 Consensus size: 39
63277347 ATTTGATGTA
*
63277357 TATCCGGACTTAAGGTCCGCAGGCTTTGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
63277396 TATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* *
63277435 TATCCGGACTTACGGTCCGCAGGCTTCATGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * *
63277474 TATCCGGGCTTAAAGACTCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTC-CGCAGGCTTCGTGCTGGAATTG
* * * * *
63277514 TATCCGGACTTAAGATCCGCAGGCTTCGTACTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
63277553 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTAGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* *
63277592 TATCCGGACTTAAGGTCCGCAGACTTCATGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * *
63277631 TATCCGGGCTTAAAGACCAGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCC-GCAGGCTTCGTGCTGGAATTG
* * * * * *
63277671 TATCCGGACTTAAGATCCGCAGGCGTCGTACTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
** * * * * *
63277710 TATCTAGACTTAAGGTCTGCAGGCTTCGTACTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * *
63277749 TATCCGGGCTTAAAGTCCCGTAGGCTT
1 TATCCGGACTTAAGGT-CCGCAGGCTT
63277776 TGTGTTGGTG
Statistics
Matches: 327, Mismatches: 50, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
39 252 0.77
40 75 0.23
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
Found at i:63277753 original size:157 final size:157
Alignment explanation
Indices: 63277357--63277766 Score: 624
Period size: 157 Copynumber: 2.6 Consensus size: 157
63277347 ATTTGATGTA
* * * * * *
63277357 TATCCGGACTTAAGGTCCGCAGGCTTTGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTT
1 TATCCGGACTTAAGATCCGCAGGCTTCGTACTGGTACTATATCCGGACTTAAGGTCCGCAGGCTT
* * *
63277422 CATGCTGGAATTGTATCCGGACTTACGGTCCGCAGGCTTCATGCTGGAATTGTATCCGGGCTTAA
66 CGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGACTTCATGCTGGAATTGTATCCGGGCTTAA
63277487 AGACTCGCAGGCTTCGTGCTGGAATTG
131 AGACTCGCAGGCTTCGTGCTGGAATTG
63277514 TATCCGGACTTAAGATCCGCAGGCTTCGTACTGGTACTATATCCGGACTTAAGGTCCGCAGGCTT
1 TATCCGGACTTAAGATCCGCAGGCTTCGTACTGGTACTATATCCGGACTTAAGGTCCGCAGGCTT
*
63277579 CGTGCTAGAATTGTATCCGGACTTAAGGTCCGCAGACTTCATGCTGGAATTGTATCCGGGCTTAA
66 CGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGACTTCATGCTGGAATTGTATCCGGGCTTAA
63277644 AGAC-CAGCAGGCTTCGTGCTGGAATTG
131 AGACTC-GCAGGCTTCGTGCTGGAATTG
* ** *
63277671 TATCCGGACTTAAGATCCGCAGGCGTCGTACTGGTACTATATCTAGACTTAAGGTCTGCAGGCTT
1 TATCCGGACTTAAGATCCGCAGGCTTCGTACTGGTACTATATCCGGACTTAAGGTCCGCAGGCTT
* * * * * *
63277736 CGTACTGGTACTATATCCGGGCTTAAAGTCC
66 CGTGCTGGAATTGTATCCGGACTTAAGGTCC
63277767 CGTAGGCTTT
Statistics
Matches: 231, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
156 1 0.00
157 230 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.28
Consensus pattern (157 bp):
TATCCGGACTTAAGATCCGCAGGCTTCGTACTGGTACTATATCCGGACTTAAGGTCCGCAGGCTT
CGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGACTTCATGCTGGAATTGTATCCGGGCTTAA
AGACTCGCAGGCTTCGTGCTGGAATTG
Found at i:63277774 original size:118 final size:117
Alignment explanation
Indices: 63277357--63277775 Score: 507
Period size: 118 Copynumber: 3.6 Consensus size: 117
63277347 ATTTGATGTA
* *
63277357 TATCCGGACTTAAGGTCCGCAGGCTTTGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTT
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAAGTCCGCAGGCTT
* * *
63277422 CATGCTGGAATTGTATCCGGACTTACGGTCCGCAGGCTTCATGCTGGAATTG
66 CGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * *
63277474 TATCCGGGCTTAAAGACTCGCAGGCTTCGTGCTGGAATTGTATCCGGACTT-AAGATCCGCAGGC
1 TATCCGGACTTAAGGTC-CGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAAG-TCCGCAGGC
* * * * *
63277538 TTCGTACTGGTACTATATCCGGACTTAAGGTCCGCAGGCTTCGTGCTAGAATTG
64 TTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * *
63277592 TATCCGGACTTAAGGTCCGCAGACTTCATGCTGGAATTGTATCCGGGCTTAAAGACCAGCAGGCT
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAAGTCC-GCAGGCT
* * * * * *
63277657 TCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCGTCGTACTGGTACTA
65 TCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
** * * * * * * *
63277710 TATCTAGACTTAAGGTCTGCAGGCTTCGTACTGGTACTATATCCGGGCTTAAAGTCCCGTAGGCT
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAAGT-CCGCAGGCT
63277775 T
65 T
63277776 TGTGTTGGTG
Statistics
Matches: 255, Mismatches: 42, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
117 48 0.19
118 205 0.80
119 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.28
Consensus pattern (117 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAAGTCCGCAGGCTT
CGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
Found at i:63286352 original size:56 final size:56
Alignment explanation
Indices: 63286285--63286495 Score: 350
Period size: 56 Copynumber: 3.8 Consensus size: 56
63286275 GAAGTATATG
* *
63286285 TGGCATCGATATGTGACTCTAATATATGTGTACGAGTAAGTCCACGTTTAATACGT
1 TGGCATCGATATGTGACTCTGATATATGTGTACGAGTAAGACCACGTTTAATACGT
*
63286341 TGGCATCGATATGTGACTCTGATATATGTGTACGAGTAAGACCACGTTTAATACGA
1 TGGCATCGATATGTGACTCTGATATATGTGTACGAGTAAGACCACGTTTAATACGT
* * *
63286397 TGGCTTCGATATGTAACTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACGT
1 TGGCATCGATATGTGACTCTGATATATGTGTACGAGTAAGACCACGTTTAATACGT
* *
63286453 TGGCATCGATATATGACTCCGATATATGTGTACGAGTAAGACC
1 TGGCATCGATATGTGACTCTGATATATGTGTACGAGTAAGACC
63286496 CTGTCTGGGG
Statistics
Matches: 143, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 143 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.32
Consensus pattern (56 bp):
TGGCATCGATATGTGACTCTGATATATGTGTACGAGTAAGACCACGTTTAATACGT
Found at i:63293097 original size:56 final size:55
Alignment explanation
Indices: 63293006--63293214 Score: 283
Period size: 56 Copynumber: 3.7 Consensus size: 55
63292996 AGTATATGTG
* * ** * *
63293006 GCATTGATATGTAACTCTAATATATGTGTACGAGTAAGTCCACGTTTAATACATT
1 GCATCGATATGTGACTCCGATATATGTGTACGAGTAAGACCACGTTTAATACGTT
* *
63293061 AGCATCGATATGTGACTCCGATATATGTGTGCGAGTAAGACCATGTTTAATACGTT
1 -GCATCGATATGTGACTCCGATATATGTGTACGAGTAAGACCACGTTTAATACGTT
* * *
63293117 GGATTCGATATGTGACTCCGATATATGTGTGCGAGGAAGACCACGTTTAATACGTT
1 GCA-TCGATATGTGACTCCGATATATGTGTACGAGTAAGACCACGTTTAATACGTT
*
63293173 GGCATCGATATATGACTCCGATATATGTGTACGAGTAAGACC
1 -GCATCGATATGTGACTCCGATATATGTGTACGAGTAAGACC
63293215 CTGTCTGGGG
Statistics
Matches: 136, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
55 2 0.01
56 132 0.97
57 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (55 bp):
GCATCGATATGTGACTCCGATATATGTGTACGAGTAAGACCACGTTTAATACGTT
Found at i:63293208 original size:112 final size:112
Alignment explanation
Indices: 63293011--63293214 Score: 318
Period size: 112 Copynumber: 1.8 Consensus size: 112
63293001 ATGTGGCATT
* * * *
63293011 GATATGTAACTCTAATATATGTGTACGAGTAAGTCCACGTTTAATACATTAGCATCGATATGTGA
1 GATATGTAACTCCAATATATGTGTACGAGGAAGACCACGTTTAATACATTAGCATCGATATATGA
*
63293076 CTCCGATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGATTC
66 CTCCGATATATGTGTACGAGTAAGACCATGTTTAATACGTTGGATTC
* * * * *
63293123 GATATGTGACTCCGATATATGTGTGCGAGGAAGACCACGTTTAATACGTTGGCATCGATATATGA
1 GATATGTAACTCCAATATATGTGTACGAGGAAGACCACGTTTAATACATTAGCATCGATATATGA
63293188 CTCCGATATATGTGTACGAGTAAGACC
66 CTCCGATATATGTGTACGAGTAAGACC
63293215 CTGTCTGGGG
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
112 82 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (112 bp):
GATATGTAACTCCAATATATGTGTACGAGGAAGACCACGTTTAATACATTAGCATCGATATATGA
CTCCGATATATGTGTACGAGTAAGACCATGTTTAATACGTTGGATTC
Found at i:63297833 original size:24 final size:24
Alignment explanation
Indices: 63297792--63297838 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
63297782 GCTTTATCAT
* *
63297792 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTAGAGGCCAAGCC-CTTTTA
63297817 ATAACTAG-GGCCAAGCCCTTTT
1 ATAACTAGAGGCCAAGCCCTTTT
63297839 TGGTAAACTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 8 0.40
25 7 0.35
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (24 bp):
ATAACTAGAGGCCAAGCCCTTTTA
Found at i:63297839 original size:24 final size:25
Alignment explanation
Indices: 63297812--63297863 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
63297802 GCCTAGCCTC
*
63297812 TTTTAAT-AACTAGGGCCAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
** *
63297836 TTTTGGTAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
63297861 TTT
1 TTT
63297864 CGCACTTCCT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:63297935 original size:21 final size:21
Alignment explanation
Indices: 63297911--63297951 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
63297901 TATAATGAGT
*
63297911 ATATCATAACATATCATGTAC
1 ATATAATAACATATCATGTAC
**
63297932 ATATAATTTCATATCATGTA
1 ATATAATAACATATCATGTA
63297952 TAACAATATC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.39
Consensus pattern (21 bp):
ATATAATAACATATCATGTAC
Found at i:63309586 original size:21 final size:21
Alignment explanation
Indices: 63309559--63309619 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
63309549 TATAATGAGT
63309559 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
63309580 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
63309601 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
63309620 ATAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:63309618 original size:10 final size:10
Alignment explanation
Indices: 63309559--63309619 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
63309549 TATAATGAGT
63309559 ATATCATAG-C
1 ATATCAT-GTC
63309569 ATATCATGTGC
1 ATATCATGT-C
* **
63309580 ATCTCATAAC
1 ATATCATGTC
63309590 ATATCATGTGC
1 ATATCATGT-C
63309601 ATATCATGTC
1 ATATCATGTC
63309611 ATATCATGT
1 ATATCATGT
63309620 ATAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:63315889 original size:31 final size:31
Alignment explanation
Indices: 63315851--63315929 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
63315841 TTTAACGGTT
*
63315851 ACTGGGCCAAAGCCTTTTCATAAATCAAATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
*
63315882 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
*
63315913 ACCGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
63315930 ATTGTAAACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCAAATC
Found at i:63316015 original size:42 final size:42
Alignment explanation
Indices: 63315953--63316044 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
63315943 TAGCCCATAG
* *
63315953 GCCCATTTCAATAACCCATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
* *
63315995 GCTCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
63316037 GCCCATTT
1 GCCCATTT
63316045 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:63316212 original size:24 final size:24
Alignment explanation
Indices: 63316185--63316242 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
63316175 GCCTAGCCTC
63316185 TTTTAATAAC-TAGGGAAAAGCCCT
1 TTTTAATAACAT-GGGAAAAGCCCT
* *
63316209 TTTTGATAAACATGGGCAAAGCCCT
1 TTTTAAT-AACATGGGAAAAGCCCT
*
63316234 TTTCAATAA
1 TTTTAATAA
63316243 ATTGGGGCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 8 0.29
25 19 0.68
26 1 0.04
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (24 bp):
TTTTAATAACATGGGAAAAGCCCT
Found at i:63316248 original size:24 final size:23
Alignment explanation
Indices: 63316179--63316248 Score: 59
Period size: 24 Copynumber: 2.9 Consensus size: 23
63316169 CTAGAGGCCT
* *
63316179 AGCCTCTTTTAATAACTAGGGAAA
1 AGCC-CTTTTAATAAATTGGGAAA
* * *
63316203 AGCCCTTTTTGATAAACATGGGCAA
1 AGCCC-TTTTAATAAA-TTGGGAAA
63316228 AGCCCTTTTCAATAAATTGGG
1 AGCCCTTTT-AATAAATTGGG
63316249 GCATAGACCT
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
23 1 0.03
24 20 0.56
25 15 0.42
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (23 bp):
AGCCCTTTTAATAAATTGGGAAA
Found at i:63317215 original size:27 final size:27
Alignment explanation
Indices: 63317185--63317292 Score: 85
Period size: 27 Copynumber: 3.9 Consensus size: 27
63317175 GTAAATCTAC
63317185 AAACTAAGGGTATTTCAGTAATTTTGT
1 AAACTAAGGGTATTTCAGTAATTTTGT
* *
63317212 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACTAAGGGTATTTC-AGTAATTTTGT
* **
63317238 AAAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAACT-AAGGGTATTTCAGTAATTTTGT
* * **
63317268 AAATTAGGGGTATTTTGGTAATTTT
1 AAACTAAGGGTATTTCAGTAATTTT
63317293 ACAAATTGAG
Statistics
Matches: 65, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
26 1 0.02
27 39 0.60
28 8 0.12
29 16 0.25
30 1 0.02
ACGTcount: A:0.32, C:0.06, G:0.18, T:0.44
Consensus pattern (27 bp):
AAACTAAGGGTATTTCAGTAATTTTGT
Found at i:63317298 original size:27 final size:27
Alignment explanation
Indices: 63317248--63317404 Score: 147
Period size: 27 Copynumber: 5.8 Consensus size: 27
63317238 AAAAAGTCAA
* ** *
63317248 GGGTATTTTTGTAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
63317275 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
63317301 AGAGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
*
63317329 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
63317356 GGGTATTTTGGTAATTCTATCATAC-AG
1 GGGTATTTTGGTAATTTTA-CAAACTAG
** *
63317383 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTACAA
63317405 TCGAGGGTAA
Statistics
Matches: 105, Mismatches: 22, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
26 4 0.04
27 96 0.91
28 5 0.05
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:63317344 original size:110 final size:108
Alignment explanation
Indices: 63317165--63317371 Score: 236
Period size: 110 Copynumber: 1.9 Consensus size: 108
63317155 CATCCTACAA
* * ***
63317165 GGGTGTTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTA
1 GGGTATTTTGGTAAATCTACAAACTAAGAGTATTTCAGTAATTTCACAAACCAATGGTATTTCTA
* *
63317230 TAATTTTTAAAAAGTCAAGGGTATTTTTGTAATTTTGTAAATTAG
66 TAA-TTTTAAAAACT-AAGGGTATTTTGGTAATTTTGTAAATTAG
* * * * * *
63317275 GGGTATTTTGGTAATTTTACAAATTGAGAGTATTTCGGTAATTTCACAAACCAGTGGTATTT-TG
1 GGGTATTTTGGTAAATCTACAAACTAAGAGTATTTCAGTAATTTCACAAACCAATGGTATTTCT-
* * *
63317339 GTAATTTTACAAACTAGGGGTATTTTGGTAATT
65 ATAATTTTAAAAACTAAGGGTATTTTGGTAATT
63317372 CTATCATACA
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
108 16 0.20
109 10 0.12
110 54 0.68
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.42
Consensus pattern (108 bp):
GGGTATTTTGGTAAATCTACAAACTAAGAGTATTTCAGTAATTTCACAAACCAATGGTATTTCTA
TAATTTTAAAAACTAAGGGTATTTTGGTAATTTTGTAAATTAG
Found at i:63317389 original size:81 final size:81
Alignment explanation
Indices: 63317249--63317404 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 81
63317239 AAAAGTCAAG
* ** * * ** *
63317249 GGTATTTTTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGAGTATTTCGGT
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTACAAACAGAGAGTATTTCAGT
63317314 AATTTCACAAACCAGT
66 AATTTCACAAACCAGT
* *
63317330 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCATACAG-GGGTATTTCAG
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTA-CAAACAGAGAGTATTTCAG
63317394 TAATTTCACAA
65 TAATTTCACAA
63317405 TCGAGGGTAA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
81 60 0.94
82 4 0.06
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTACAAACAGAGAGTATTTCAGT
AATTTCACAAACCAGT
Found at i:63317486 original size:27 final size:27
Alignment explanation
Indices: 63317407--63317478 Score: 108
Period size: 27 Copynumber: 2.7 Consensus size: 27
63317397 TTTCACAATC
**
63317407 GAGGGTAAAACGGTAATTTTGTAAGCT
1 GAGGGTAAAACGGTAATTTTGTAAATT
*
63317434 GAGGGTAAAATGGTAATTTTGTAAATT
1 GAGGGTAAAACGGTAATTTTGTAAATT
*
63317461 GAGGGTAAAACGATAATT
1 GAGGGTAAAACGGTAATT
63317479 CTATAAATCA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.38, C:0.04, G:0.28, T:0.31
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTTTGTAAATT
Found at i:63317492 original size:27 final size:27
Alignment explanation
Indices: 63317435--63317494 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
63317425 TTGTAAGCTG
* * * * **
63317435 AGGGTAAAATGGTAATTTTGTAAATTG
1 AGGGTAAAACGATAATTCTATAAATCA
63317462 AGGGTAAAACGATAATTCTATAAATCA
1 AGGGTAAAACGATAATTCTATAAATCA
63317489 AGGGTA
1 AGGGTA
63317495 CTTTGGTAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.42, C:0.05, G:0.23, T:0.30
Consensus pattern (27 bp):
AGGGTAAAACGATAATTCTATAAATCA
Found at i:63321825 original size:40 final size:40
Alignment explanation
Indices: 63321781--63322042 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
63321771 GCTCCTCGTT
* *
63321781 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
63321821 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
63321861 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
63321900 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
63321939 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
63321978 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
63322019 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63322043 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:63329192 original size:56 final size:56
Alignment explanation
Indices: 63329106--63329217 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
63329096 TCAGCATCTG
63329106 CCTTTAAGGTAGACTTTACCTATTTCATAGTCTCCATGATTCAACTAGCCCTTTTA
1 CCTTTAAGGTAGACTTTACCTATTTCATAGTCTCCATGATTCAACTAGCCCTTTTA
*
63329162 CCTTTAAGGTAGACTTTACCTATTTCATAGTCTCCATGATTTAACTAGCCCTTTTA
1 CCTTTAAGGTAGACTTTACCTATTTCATAGTCTCCATGATTCAACTAGCCCTTTTA
63329218 GCATAAATAG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.25, C:0.24, G:0.11, T:0.40
Consensus pattern (56 bp):
CCTTTAAGGTAGACTTTACCTATTTCATAGTCTCCATGATTCAACTAGCCCTTTTA
Found at i:63330441 original size:47 final size:47
Alignment explanation
Indices: 63330363--63330662 Score: 519
Period size: 47 Copynumber: 6.4 Consensus size: 47
63330353 CCCTTCGGGA
* * * * * *
63330363 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63330410 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63330457 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63330504 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63330551 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63330598 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63330645 CTTATCACATATACACAC
1 CTTATCACATATATACAC
63330663 CTTGTACATC
Statistics
Matches: 242, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 242 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63333726 original size:48 final size:48
Alignment explanation
Indices: 63333612--63333719 Score: 146
Period size: 48 Copynumber: 2.2 Consensus size: 48
63333602 GCCACAATAT
* *
63333612 ATATACACATCTCATACATATTTCACATTAGCCATTTGGCTTTACCAC
1 ATATACATACCTCATACATATTTCACATTAGCCATTTGGCTTTACCAC
* **
63333660 ATATGCATGGCTCATACATATTTCACATTAGCC-TTTCGGCTTTACCAC
1 ATATACATACCTCATACATATTTCACATTAGCCATTT-GGCTTTACCAC
*
63333708 ATATATATACCT
1 ATATACATACCT
63333720 TGTACATCAA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
47 3 0.06
48 48 0.94
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (48 bp):
ATATACATACCTCATACATATTTCACATTAGCCATTTGGCTTTACCAC
Found at i:63335034 original size:26 final size:27
Alignment explanation
Indices: 63334989--63335041 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
63334979 TTAAATTCTG
* *
63334989 GCATGCATTCGGACACTTAAAAATTCA
1 GCATACATTCGAACACTTAAAAATTCA
*
63335016 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAAATTCA
63335042 CTAGCTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAAATTCA
Found at i:63345960 original size:81 final size:80
Alignment explanation
Indices: 63345814--63345976 Score: 265
Period size: 81 Copynumber: 2.0 Consensus size: 80
63345804 TTGGACGCAA
63345814 ATGTATAACCCGAAATTGTATGTTTGTTTGTGTGATAAGTCCGATAATGCCTCGTAACCTATTCT
1 ATGTATAACCCGAAATTGTATGTTTGTTTGTGTGATAAGTCCGATAATGCCTC-TAACCTATTCT
63345879 GACGTTGAATACGGAT
65 GACGTTGAATACGGAT
* * *
63345895 ATGTATAGCCCGAAATTGTATGTTTGTTTGTGTGATAAGTCTGATAATGCCT-TATACTCTGTTC
1 ATGTATAACCCGAAATTGTATGTTTGTTTGTGTGATAAGTCCGATAATGCCTCTA-AC-CTATTC
63345959 TGACGTTGAATACGGAT
64 TGACGTTGAATACGGAT
63345976 A
1 A
63345977 AGGGTGTTAC
Statistics
Matches: 77, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
79 2 0.03
80 2 0.03
81 73 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.37
Consensus pattern (80 bp):
ATGTATAACCCGAAATTGTATGTTTGTTTGTGTGATAAGTCCGATAATGCCTCTAACCTATTCTG
ACGTTGAATACGGAT
Found at i:63349481 original size:39 final size:39
Alignment explanation
Indices: 63349438--63349653 Score: 245
Period size: 39 Copynumber: 5.5 Consensus size: 39
63349428 CTTCGGAACT
* * * ** * **
63349438 TTAAGCCCGGATATATTTCCAGCACGTAACCTACAAACC
1 TTAAGTCCAGATATAATTCCAGCATATAGCCTACGGACC
* * *
63349477 TTAAGTCCAAATTATAATTCCAACATATAGCCTGCGGACC
1 TTAAGTCCAGA-TATAATTCCAGCATATAGCCTACGGACC
*
63349517 TTAAGTCCAGATATATTTCCAGCATATAGCCTACGGACC
1 TTAAGTCCAGATATAATTCCAGCATATAGCCTACGGACC
* * *
63349556 TTAAGTCCGGATATAATTCCAACATATAGCCTGCGGACC
1 TTAAGTCCAGATATAATTCCAGCATATAGCCTACGGACC
* * * *
63349595 TTAAGTTCGGATATAATTCCAGCATATAGCTTGCGGACC
1 TTAAGTCCAGATATAATTCCAGCATATAGCCTACGGACC
63349634 TTAAGTCCAGAT-TAATTCCA
1 TTAAGTCCAGATATAATTCCA
63349654 AATATCATGC
Statistics
Matches: 152, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
38 8 0.05
39 114 0.75
40 30 0.20
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (39 bp):
TTAAGTCCAGATATAATTCCAGCATATAGCCTACGGACC
Found at i:63349600 original size:78 final size:78
Alignment explanation
Indices: 63349438--63349658 Score: 302
Period size: 78 Copynumber: 2.8 Consensus size: 78
63349428 CTTCGGAACT
* ** * ** *
63349438 TTAAGCCCGGATATATTTCCAGCACGTAACCTACAAACCTTAAGTCCAAATTATAATTCCAACAT
1 TTAAGTCCGGATATATTTCCAGCATATAGCCTACGGACCTTAAGTCCAGA-TATAATTCCAACAT
63349503 ATAGCCTGCGGACC
65 ATAGCCTGCGGACC
* *
63349517 TTAAGTCCAGATATATTTCCAGCATATAGCCTACGGACCTTAAGTCCGGATATAATTCCAACATA
1 TTAAGTCCGGATATATTTCCAGCATATAGCCTACGGACCTTAAGTCCAGATATAATTCCAACATA
63349582 TAGCCTGCGGACC
66 TAGCCTGCGGACC
* * * *
63349595 TTAAGTTCGGATATAATTCCAGCATATAGCTTGCGGACCTTAAGTCCAGAT-TAATTCCAA-ATA
1 TTAAGTCCGGATATATTTCCAGCATATAGCCTACGGACCTTAAGTCCAGATATAATTCCAACATA
63349658 T
66 T
63349659 CATGCATATT
Statistics
Matches: 127, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
76 4 0.03
77 9 0.07
78 73 0.57
79 41 0.32
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (78 bp):
TTAAGTCCGGATATATTTCCAGCATATAGCCTACGGACCTTAAGTCCAGATATAATTCCAACATA
TAGCCTGCGGACC
Found at i:63350639 original size:11 final size:12
Alignment explanation
Indices: 63350618--63350646 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
63350608 CTTTCATTTC
63350618 TAATGTTATAAG
1 TAATGTTATAAG
63350630 TAAT-TTATAAG
1 TAATGTTATAAG
63350641 TAATGT
1 TAATGT
63350647 CGAATGCTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (12 bp):
TAATGTTATAAG
Found at i:63357204 original size:39 final size:38
Alignment explanation
Indices: 63357190--63357324 Score: 180
Period size: 39 Copynumber: 3.4 Consensus size: 38
63357180 CTACACGTAA
* *
63357190 CCTGCGAACCTTAAGTCCGAATTATAATTCTAGCATATAG
1 CCTGCGGACCTTAAGT-CGGA-TATAATTCTAGCATATAG
* *
63357230 CCTGCGGACCTTAAGCCCGGATATATTTCTAGCATATAG
1 CCTGCGGACCTTAAG-TCGGATATAATTCTAGCATATAG
* *
63357269 CCTGCGGACCTTAAGTCTGGATATAATTCCATCATATAG
1 CCTGCGGACCTTAAGTC-GGATATAATTCTAGCATATAG
63357308 CCTGCGGACCTTAAGTC
1 CCTGCGGACCTTAAGTC
63357325 CAGATTAATT
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.01
39 67 0.79
40 17 0.20
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (38 bp):
CCTGCGGACCTTAAGTCGGATATAATTCTAGCATATAG
Found at i:63357252 original size:79 final size:78
Alignment explanation
Indices: 63357161--63357322 Score: 218
Period size: 79 Copynumber: 2.1 Consensus size: 78
63357151 CTTCTACACT
* * *
63357161 TTAAGCTCGGATATATTTCCTA-CACGTAACCTGCGAACCTTAAGTCCGAATTATAATTCTAGCA
1 TTAAGCCCGGATATATTT-CTAGCACATAACCTGCGAACCTTAAGTCCGAA-TATAATTCCAGCA
63357225 TATAGCCTGCGGACC
64 TATAGCCTGCGGACC
* * * * * *
63357240 TTAAGCCCGGATATATTTCTAGCATATAGCCTGCGGACCTTAAGTCTGGATATAATTCCATCATA
1 TTAAGCCCGGATATATTTCTAGCACATAACCTGCGAACCTTAAGTCCGAATATAATTCCAGCATA
63357305 TAGCCTGCGGACC
66 TAGCCTGCGGACC
63357318 TTAAG
1 TTAAG
63357323 TCCAGATTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
78 34 0.47
79 39 0.53
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (78 bp):
TTAAGCCCGGATATATTTCTAGCACATAACCTGCGAACCTTAAGTCCGAATATAATTCCAGCATA
TAGCCTGCGGACC
Found at i:63367054 original size:19 final size:19
Alignment explanation
Indices: 63367030--63367066 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
63367020 CCTTTTTACT
63367030 TAAATTCGTTGTTAAAACA
1 TAAATTCGTTGTTAAAACA
63367049 TAAATTCGTTGTTAAAAC
1 TAAATTCGTTGTTAAAAC
63367067 TAAGTAATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.38
Consensus pattern (19 bp):
TAAATTCGTTGTTAAAACA
Found at i:63369945 original size:36 final size:36
Alignment explanation
Indices: 63369905--63369976 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
63369895 AATTAATATG
*
63369905 TAGGGATAGGATGCATTTTTATCTAAAATTTTCTTT
1 TAGGGAAAGGATGCATTTTTATCTAAAATTTTCTTT
63369941 TAGGGAAAGGATGCATTTTTATCTAAAATTTTCTTT
1 TAGGGAAAGGATGCATTTTTATCTAAAATTTTCTTT
63369977 CAGTTTTCTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.46
Consensus pattern (36 bp):
TAGGGAAAGGATGCATTTTTATCTAAAATTTTCTTT
Found at i:63371969 original size:44 final size:45
Alignment explanation
Indices: 63371906--63371995 Score: 128
Period size: 44 Copynumber: 2.0 Consensus size: 45
63371896 CCAAAACATG
* * * *
63371906 TGTCACAGACATCATGAACTCA-ACTACAACTCAATGAGTTTAGA
1 TGTCACAAACATCATGAACTCAGACCAAAACTCAATGAGTTCAGA
*
63371950 TGTCACAAATATCATGAACTCAGACCAAAACTCAATGAGTTCAGA
1 TGTCACAAACATCATGAACTCAGACCAAAACTCAATGAGTTCAGA
63371995 T
1 T
63371996 CACGATAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 20 0.50
45 20 0.50
ACGTcount: A:0.40, C:0.22, G:0.13, T:0.24
Consensus pattern (45 bp):
TGTCACAAACATCATGAACTCAGACCAAAACTCAATGAGTTCAGA
Found at i:63379888 original size:17 final size:18
Alignment explanation
Indices: 63379866--63379899 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63379856 TCACATTGAA
63379866 GTGTTTT-AGTGAAAACT
1 GTGTTTTCAGTGAAAACT
*
63379883 GTGTTTTCATTGAAAAC
1 GTGTTTTCAGTGAAAAC
63379900 CCTTCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACT
Found at i:63382405 original size:79 final size:81
Alignment explanation
Indices: 63382262--63382445 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
63382252 TACTCGTTCA
* *
63382262 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACACAAATGCCTTCGGGACTTAACTCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGGACTTAACTCGGA
* *
63382326 TTTAGTAAC-TCGCACC
66 TATAGTAACTTAGCA-C
* *
63382342 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTT-AGTCCG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGGA-CTTAACT-CG
* *
63382403 GATATGGTCACTTAGCAC
64 GATATAGTAACTTAGCAC
*
63382421 AAAGCCTTCGGGACTTAGCCCGGAA
1 AATGCCTTCGGGACTTAGCCCGGAA
63382446 ATCATTCGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 5 0.06
79 56 0.62
80 29 0.32
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGGACTTAACTCGGA
TATAGTAACTTAGCAC
Found at i:63382444 original size:40 final size:40
Alignment explanation
Indices: 63382260--63382444 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
63382250 GCTACTCGTT
* *
63382260 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACT-AGCA
* * * *
63382300 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
63382340 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* * *
63382379 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
63382420 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63382445 AATCATTCGT
Statistics
Matches: 122, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 77 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:63395395 original size:75 final size:75
Alignment explanation
Indices: 63395272--63395570 Score: 589
Period size: 75 Copynumber: 4.0 Consensus size: 75
63395262 GCCGTACCCG
63395272 ACGTTGGGATAGGGTTCGAAGCATTACCAAGACTTTACATTTGAAACGTACCAAATTGGGTCACC
1 ACGTTGGGATAGGGTTCGAAGCATTACCAAGACTTTACATTTGAAACGTACCAAATTGGGTCACC
63395337 AAGTTTTTAT
66 AAGTTTTTAT
63395347 ACGTTGGGATAGGGTTCGAAGCATTACCAAGACTTTACATTTGAAACGTACCAAATTGGGTCACC
1 ACGTTGGGATAGGGTTCGAAGCATTACCAAGACTTTACATTTGAAACGTACCAAATTGGGTCACC
63395412 AAGTTTTTAT
66 AAGTTTTTAT
63395422 ACGTTGGGATAGGGTTCGAAGCATTACCAAGACTTTACATTTGAAACGTACCAAATTGGGTCACC
1 ACGTTGGGATAGGGTTCGAAGCATTACCAAGACTTTACATTTGAAACGTACCAAATTGGGTCACC
63395487 AAGTTTTTAT
66 AAGTTTTTAT
*
63395497 ACGTTGGGATAGGGTTCGAAGCATTACCAAGACTTTACATTTGAAATGTACCAAATTGGGTCACC
1 ACGTTGGGATAGGGTTCGAAGCATTACCAAGACTTTACATTTGAAACGTACCAAATTGGGTCACC
63395562 AAGTTTTTA
66 AAGTTTTTA
63395571 CTCAAATTTT
Statistics
Matches: 223, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 223 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (75 bp):
ACGTTGGGATAGGGTTCGAAGCATTACCAAGACTTTACATTTGAAACGTACCAAATTGGGTCACC
AAGTTTTTAT
Found at i:63406278 original size:559 final size:558
Alignment explanation
Indices: 63405222--63406339 Score: 1640
Period size: 559 Copynumber: 2.0 Consensus size: 558
63405212 TTTTGAACAT
**
63405222 AAACCCTAGCATGAAATATGGGTAGAAATGAAAAGAGCAAACTACCGGGATTTCAAAAATACAAA
1 AAACCCTAGCATGAAATATGGGTAGAAATGAAAAGAGCAAACTACCGAAATTTCAAAAATACAAA
* * *
63405287 GAACATGAAAAACGGGGCTTGGGAGCACTTACTATTGAGCTTGAAAAGCTTGGAAACCCTTGCTA
66 GAACATGAAAAACGGGACTTGGGAGCACTTACTATTGAGCTTGAAAAGCTTGAAAACCCTAGCTA
* *
63405352 TGATGGCTTAGGAATTTAGGCTAGACAAGGAAAAAGAATGGCTGAATTTTGCCTTCTTTTTCCCA
131 TGAGGGCTTAGGAATTTAGACTAGACAAGGAAAAAGAATGGCTGAATTTTGCCTTCTTTTTCCCA
* * *
63405417 TTTTATTTCATAAGTATGCCAAATGACCAAAATGTCCTTAAGCCATTTCTTAAAAATTTCATCCA
196 TTTTATTTCATAAGAATGCCAAATAACCAAAATGCCCTTAAGCCATTTCTTAAAAATTTCATCCA
** ** *
63405482 TGCAAGCCCATTTTTGTCTGAAAACTTAAAAATTGGGCAAATTGCTCCCCAAGACCTTCTATTTT
261 TGCAAGCCCATTTTTGTCCAAAAACTTAAAAATTGGAAAAATTGCTCCCCAAGACCTTCTAATTT
* * * *
63405547 ATAATCTAAAACAATTTTATGCAAATTTCTTCTAGAATCCAAGTTTTGCAATTTATTCAATTTAG
326 ATAATCGAAAACAATTTCATACAAATTGCTTCTAGAATCCAAGTTTTGCAATTTATTCAATTTAG
* * * * * *
63405612 TTCCTAATTTCCAATTGGACATCTTATACTTAGGAATTCTTCACGAAACTTTAAGACATGCGTAT
391 TCCCTAATTTCCAATTGGACACCTTATACTAAAGAATTCTTCACGAAACTTTAACACATGCATAT
* *
63405677 ACTCATATTCTAGGCCTCATAATAATCATAAAATAAATATTTTGGTGTC-GAATTTGTGGTCCCG
456 ACTCATATTCTAGGCCTCATAATAATCATAAAATAAATATTTTGATGTCTG-ATTTGTGGTCCCA
63405741 AAACCACTATTCTGACTAGGCCCTATTTCAGGATGTTAC
520 AAACCACTATTCTGACTAGGCCCTATTTCAGGATGTTAC
* * * *
63405780 AAACCCTAGCATGAAATATGGGTAGAAATGGAGAGAGCAAGCTACTGAAATTTCAAAAATACAAA
1 AAACCCTAGCATGAAATATGGGTAGAAATGAAAAGAGCAAACTACCGAAATTTCAAAAATACAAA
* *
63405845 GAACATTAAAAACGGGATTTGGGAGCACTTACTATTGAGCTTGAAAAGCTTGAAAACCCTAGCTA
66 GAACATGAAAAACGGGACTTGGGAGCACTTACTATTGAGCTTGAAAAGCTTGAAAACCCTAGCTA
* * * * * *
63405910 TGGAGGGCTT-GAGAGTTTCGACTGGTACAAAGG-AGAA-AATGGCTGATTTTTG-TTTCATTTT
131 T-GAGGGCTTAG-GAATTTAGACTAG-AC-AAGGAAAAAGAATGGCTGAATTTTGCCTTC-TTTT
* *
63405971 TCCCATTTTATTTCATTAA-AATGCCAAATAACCAAAATGCCCTTAAGCCCTTTCTTTAAAATTT
191 TCCCATTTTATTTCA-TAAGAATGCCAAATAACCAAAATGCCCTTAAGCCATTTCTTAAAAATTT
* * * * *
63406035 CATTCATGCAAGCCCATTTTTGTCCAAAAACTTAGAAATTGGAAAAATTTCTCTCTAAGACCTTC
255 CATCCATGCAAGCCCATTTTTGTCCAAAAACTTAAAAATTGGAAAAATTGCTCCCCAAGACCTTC
63406100 TAATTTATAATCGAAAACAATTTCATACAAATTGCTTCTAGAATCCAAGTTTTGCAATTTATTCA
320 TAATTTATAATCGAAAACAATTTCATACAAATTGCTTCTAGAATCCAAGTTTTGCAATTTATTCA
*
63406165 ATTTAGTCCCTAATTTCCAATTGGACACC-T-TACTCAAAGAATTTCTTCATGAAACTTTAACAC
385 ATTTAGTCCCTAATTTCCAATTGGACACCTTATACT-AAAGAA-TTCTTCACGAAACTTTAACAC
*
63406228 ATGCATATTCTCATATTCTAGGCCTCATAATAATCATAAAATAAATATTTTGATGTCTGATTTGT
448 ATGCATATACTCATATTCTAGGCCTCATAATAATCATAAAATAAATATTTTGATGTCTGATTTGT
* * *
63406293 GGTCCTAAAACCACTATTCTGACTAGGCCTTATTTCGGGATGTTAC
513 GGTCCCAAAACCACTATTCTGACTAGGCCCTATTTCAGGATGTTAC
63406339 A
1 A
63406340 TCTAGGCTTC
Statistics
Matches: 500, Mismatches: 51, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
557 4 0.01
558 129 0.26
559 354 0.71
560 9 0.02
561 4 0.01
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.32
Consensus pattern (558 bp):
AAACCCTAGCATGAAATATGGGTAGAAATGAAAAGAGCAAACTACCGAAATTTCAAAAATACAAA
GAACATGAAAAACGGGACTTGGGAGCACTTACTATTGAGCTTGAAAAGCTTGAAAACCCTAGCTA
TGAGGGCTTAGGAATTTAGACTAGACAAGGAAAAAGAATGGCTGAATTTTGCCTTCTTTTTCCCA
TTTTATTTCATAAGAATGCCAAATAACCAAAATGCCCTTAAGCCATTTCTTAAAAATTTCATCCA
TGCAAGCCCATTTTTGTCCAAAAACTTAAAAATTGGAAAAATTGCTCCCCAAGACCTTCTAATTT
ATAATCGAAAACAATTTCATACAAATTGCTTCTAGAATCCAAGTTTTGCAATTTATTCAATTTAG
TCCCTAATTTCCAATTGGACACCTTATACTAAAGAATTCTTCACGAAACTTTAACACATGCATAT
ACTCATATTCTAGGCCTCATAATAATCATAAAATAAATATTTTGATGTCTGATTTGTGGTCCCAA
AACCACTATTCTGACTAGGCCCTATTTCAGGATGTTAC
Found at i:63409982 original size:6 final size:6
Alignment explanation
Indices: 63409971--63410023 Score: 79
Period size: 6 Copynumber: 8.3 Consensus size: 6
63409961 TTCTTTTCAG
63409971 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTCATT GTTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT-A-T -TTTTAT TTTTAT
63410022 TT
1 TT
63410024 CTTAGACTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
6 36 0.82
7 2 0.05
8 2 0.05
9 4 0.09
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:63409985 original size:18 final size:18
Alignment explanation
Indices: 63409959--63410023 Score: 76
Period size: 18 Copynumber: 3.4 Consensus size: 18
63409949 ATTTAATTTC
*
63409959 TTTTCTTTTCAGTTTTAT
1 TTTTATTTTCAGTTTTAT
* *
63409977 TTTTATTTTTATTTTTAT
1 TTTTATTTTCAGTTTTAT
63409995 TTTTATTTTTCATTGTTTTAT
1 TTTTA-TTTTCA--GTTTTAT
63410016 TTTTATTT
1 TTTTATTT
63410024 CTTAGACTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
18 20 0.51
19 5 0.13
20 3 0.08
21 11 0.28
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.78
Consensus pattern (18 bp):
TTTTATTTTCAGTTTTAT
Found at i:63412884 original size:47 final size:47
Alignment explanation
Indices: 63412827--63413312 Score: 759
Period size: 47 Copynumber: 10.4 Consensus size: 47
63412817 ATTGATGTAC
* * *
63412827 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * *
63412874 AAGTATATATATATGTGATAGGGCTGAGTGGCCAACGTGATGAATGTGA
1 AAG--TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
63412923 AAGTGTATATA--TG-T---GCCGAGTGGCCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * *
63412964 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
63413011 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
63413058 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
63413105 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
63413152 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
63413199 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
63413246 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
63413293 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
63413313 TCCCGAAGGG
Statistics
Matches: 418, Mismatches: 13, Indels: 16
0.94 0.03 0.04
Matches are distributed among these distances:
41 37 0.09
43 2 0.00
44 2 0.00
45 2 0.00
47 330 0.79
49 45 0.11
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:63415806 original size:38 final size:38
Alignment explanation
Indices: 63415742--63415816 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
63415732 AATCCGAGTT
*
63415742 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
63415780 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
63415817 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:63415929 original size:40 final size:40
Alignment explanation
Indices: 63415874--63416153 Score: 380
Period size: 40 Copynumber: 7.0 Consensus size: 40
63415864 CTCGACAATG
63415874 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
*
63415914 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
* * *
63415954 ATCCAGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
* *
63415994 ATCCGGGCTAAGTCCTGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
* * *
63416034 ATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
* ** * * * *
63416074 ATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
* * * *
63416114 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
63416154 GTATTCGGGC
Statistics
Matches: 210, Mismatches: 30, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 210 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
Found at i:63417644 original size:46 final size:45
Alignment explanation
Indices: 63417594--63417769 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
63417584 GGTTGAGCAT
63417594 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGC
* * * * *
63417640 CCGAACTCATTGAGTTGAGTCCGAATTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--GC
* * *
63417685 ATCCGAGCTCGTTGACTTGAGTCCGAGTTCACTTATGGATGTGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGC
*
63417733 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
63417770 CGGGTTACAT
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 62 0.58
47 24 0.22
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGC
Found at i:63431528 original size:27 final size:27
Alignment explanation
Indices: 63431497--63431728 Score: 304
Period size: 27 Copynumber: 8.6 Consensus size: 27
63431487 TAAATTGTAC
*
63431497 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* ** *
63431524 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGACTATGT
* * *
63431550 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAGTTGACTATGT
*
63431578 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
63431606 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
63431633 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* * *
63431660 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
63431687 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
63431714 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63431729 GACTCAATAT
Statistics
Matches: 182, Mismatches: 20, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
27 158 0.87
28 24 0.13
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:63431692 original size:109 final size:108
Alignment explanation
Indices: 63431497--63431728 Score: 313
Period size: 109 Copynumber: 2.1 Consensus size: 108
63431487 TAAATTGTAC
* *
63431497 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
* * *
63431562 TGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
66 TGCGAATTGACCACGCAGCACTAAGTGTGCGAG-TTGACTATAT
** *
63431606 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATG-TAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGT
* ** * *
63431670 GTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATAT
65 GTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATAT
*
63431714 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63431729 GACTCAATAT
Statistics
Matches: 108, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
108 23 0.21
109 85 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
TGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATAT
Found at i:63437983 original size:48 final size:48
Alignment explanation
Indices: 63437900--63437993 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
63437890 AGGGAATTCT
* * *
63437900 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTAACTTAGGCGTTTTTACG
63437948 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTAACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTAACTTAGGCGTTTTTA
63437994 AGCCAAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
47 2 0.05
48 39 0.95
ACGTcount: A:0.20, C:0.13, G:0.27, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTAACTTAGGCGTTTTTACG
Found at i:63438521 original size:46 final size:46
Alignment explanation
Indices: 63438451--63438623 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
63438441 TGGGCATCCA
*
63438451 AGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * * *
63438497 ACCTCGTTGAGTTGAGTCCCAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* * *
63438544 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGCGAACGCCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * *
63438590 AGCTCGTTGAGTTGACTCCAAGTTCGCTTATGGA
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
63438624 CGGGTTACAT
Statistics
Matches: 100, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 55 0.55
47 27 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (46 bp):
AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:63438602 original size:93 final size:93
Alignment explanation
Indices: 63438443--63438615 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
63438433 AGGATATTTG
* *
63438443 GGCATCCAAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATGTCCGACCTCGTTGAG
1 GGCATCCAAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAACGCCCGACCTCGTTGAG
* *
63438508 TTGAGTCCCAGTTCGTGAGATGTAACTA
66 TTGACTCCAAGTTCGTGAGATGTAACTA
* * * *
63438536 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCAAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAACGCCCGACCTCGTTGAG
63438601 TTGACTCCAAGTTCG
66 TTGACTCCAAGTTCG
63438616 CTTATGGACG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCAAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAACGCCCGACCTCGTTGAG
TTGACTCCAAGTTCGTGAGATGTAACTA
Found at i:63446158 original size:46 final size:46
Alignment explanation
Indices: 63446091--63446219 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
63446081 TATTTGAGCA
* *
63446091 TCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
63446137 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
63446183 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63446220 GCGGGTTACA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.18, C:0.22, G:0.31, T:0.29
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:63456908 original size:21 final size:21
Alignment explanation
Indices: 63456884--63456925 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
63456874 TGAACTTGTT
63456884 GGGAAGAGATCGCAACATGTC
1 GGGAAGAGATCGCAACATGTC
63456905 GGGAAGAGATCGCAACATGTC
1 GGGAAGAGATCGCAACATGTC
63456926 TATTTACTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.33, T:0.14
Consensus pattern (21 bp):
GGGAAGAGATCGCAACATGTC
Found at i:63459368 original size:51 final size:51
Alignment explanation
Indices: 63459292--63459411 Score: 186
Period size: 51 Copynumber: 2.4 Consensus size: 51
63459282 AACTCAGTTA
* *
63459292 TCCGGATAAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATTAT
1 TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAAT
* * *
63459343 TCCGGATGAAATATGAAGCTCTTGTTGAAGTTAGAGCAACAAGGTAATAAT
1 TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAAT
*
63459394 TCCGGATGAAGTATGAAG
1 TCCGGATGAAATATGAAG
63459412 TAAGTTTGAG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (51 bp):
TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAAT
Found at i:63468088 original size:24 final size:24
Alignment explanation
Indices: 63468061--63468109 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
63468051 AAGAAAAGTT
63468061 AAGAATTACTGCATATAAGACATA
1 AAGAATTACTGCATATAAGACATA
63468085 AAGAATTACTGCATATAAGACATA
1 AAGAATTACTGCATATAAGACATA
63468109 A
1 A
63468110 TAATCATACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.12, G:0.12, T:0.24
Consensus pattern (24 bp):
AAGAATTACTGCATATAAGACATA
Found at i:63473376 original size:17 final size:17
Alignment explanation
Indices: 63473354--63473388 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
63473344 GCTAAGCTTT
63473354 ATCACACTTTATTCGAC
1 ATCACACTTTATTCGAC
63473371 ATCACACTTTATTCGAC
1 ATCACACTTTATTCGAC
63473388 A
1 A
63473389 GCACCAACAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (17 bp):
ATCACACTTTATTCGAC
Found at i:63474118 original size:27 final size:28
Alignment explanation
Indices: 63474058--63474118 Score: 65
Period size: 27 Copynumber: 2.2 Consensus size: 28
63474048 AAATCATAAA
**
63474058 TTGGTACTTAATTTTTTTTTGTCACAAG
1 TTGGTACTTAATCATTTTTTGTCACAAG
*
63474086 -TAGTACTTAAATCATTTTTT-TC-CAAG
1 TTGGTACTT-AATCATTTTTTGTCACAAG
63474112 TTGGTAC
1 TTGGTAC
63474119 CTCTATTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
26 4 0.15
27 14 0.52
28 9 0.33
ACGTcount: A:0.25, C:0.13, G:0.13, T:0.49
Consensus pattern (28 bp):
TTGGTACTTAATCATTTTTTGTCACAAG
Found at i:63474317 original size:19 final size:19
Alignment explanation
Indices: 63474289--63474325 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
63474279 AAGACAAAAA
*
63474289 ATATTATTTTTTCTTTTAT
1 ATATTATTTTTACTTTTAT
*
63474308 ATATTGTTTTTACTTTTA
1 ATATTATTTTTACTTTTA
63474326 AATTTTTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.70
Consensus pattern (19 bp):
ATATTATTTTTACTTTTAT
Found at i:63476495 original size:48 final size:48
Alignment explanation
Indices: 63476360--63476588 Score: 262
Period size: 48 Copynumber: 4.8 Consensus size: 48
63476350 TCTTAAATCG
* * * *
63476360 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCGATACCA
1 ATGCCATATCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
**
63476408 ATGCCATATCCCA-ATGTGGTCTTACATGAGATCACATATCGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
* * * * *
63476455 ATGTCATATCCCATATATGGTCTTACATGGGATCACATATCAATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
* * * * * *
63476503 ATGCCATGTCTCAGACATGGTTTTACATGGGATAACACATCGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
* * * *
63476551 ATGTCATGTCCTAGACGTGGTCTTACATGAGATCACAT
1 ATGCCATATCCCAGACATGGTCTTACATGAGATCACAT
63476589 GTAACCCTAA
Statistics
Matches: 153, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
47 41 0.27
48 112 0.73
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (48 bp):
ATGCCATATCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
Found at i:63482300 original size:27 final size:27
Alignment explanation
Indices: 63482269--63482323 Score: 94
Period size: 27 Copynumber: 2.0 Consensus size: 27
63482259 TAAATAAGTG
63482269 TTAATAAATATG-CTTTTAATCTGAACA
1 TTAATAAATATGTC-TTTAATCTGAACA
63482296 TTAATAAATATGTCTTTAATCTGAACA
1 TTAATAAATATGTCTTTAATCTGAACA
63482323 T
1 T
63482324 GTTAATTAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.42
Consensus pattern (27 bp):
TTAATAAATATGTCTTTAATCTGAACA
Found at i:63484271 original size:19 final size:18
Alignment explanation
Indices: 63484240--63484292 Score: 52
Period size: 20 Copynumber: 2.8 Consensus size: 18
63484230 GAAAGAATTT
*
63484240 GAAAAAGAAAAAAAGAGTGA
1 GAAAAAGAAAAAGAGA-T-A
* *
63484260 GAAAAAGCAAAATGAGATT
1 GAAAAAG-AAAAAGAGATA
63484279 GAAAAAGAAAAAGA
1 GAAAAAGAAAAAGA
63484293 ATGCGAGCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 6 0.21
19 7 0.25
20 8 0.29
21 7 0.25
ACGTcount: A:0.68, C:0.02, G:0.23, T:0.08
Consensus pattern (18 bp):
GAAAAAGAAAAAGAGATA
Found at i:63485427 original size:22 final size:23
Alignment explanation
Indices: 63485401--63485445 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
63485391 CATACTTTGT
63485401 TTTGGTTAACTAC-TATTCTCTG
1 TTTGGTTAACTACATATTCTCTG
63485423 TTTGGTTAACTACATTATTCTCT
1 TTTGGTTAACTACA-TATTCTCT
63485446 ATCATTGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 13 0.62
24 8 0.38
ACGTcount: A:0.20, C:0.18, G:0.11, T:0.51
Consensus pattern (23 bp):
TTTGGTTAACTACATATTCTCTG
Done.