Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 194 of 322
Found at i:63879931 original size:20 final size:20
Alignment explanation
Indices: 63879850--63879938 Score: 81
Period size: 20 Copynumber: 4.5 Consensus size: 20
63879840 CTTAAAGTAA
* * *
63879850 AGTATTGATACTTTTCTCAA
1 AGTATTGATACCTTTATCAT
* * * *
63879870 AGTTTTGATACTTTTATTAA
1 AGTATTGATACCTTTATCAT
*
63879890 AGTATT-ATACCTTTATTAT
1 AGTATTGATACCTTTATCAT
*
63879909 AGTATTGATACCTTTATCCT
1 AGTATTGATACCTTTATCAT
*
63879929 AGTATCGATA
1 AGTATTGATA
63879939 TCGTTTTATG
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
19 17 0.29
20 42 0.71
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.47
Consensus pattern (20 bp):
AGTATTGATACCTTTATCAT
Found at i:63880820 original size:18 final size:18
Alignment explanation
Indices: 63880797--63880833 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
63880787 TAAAGTAAAG
63880797 TTCTTGAAGTACTTACCT
1 TTCTTGAAGTACTTACCT
63880815 TTCTTGAAGTACTTACCT
1 TTCTTGAAGTACTTACCT
63880833 T
1 T
63880834 GTCTCTCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.46
Consensus pattern (18 bp):
TTCTTGAAGTACTTACCT
Found at i:63885876 original size:40 final size:40
Alignment explanation
Indices: 63885824--63886055 Score: 349
Period size: 40 Copynumber: 5.8 Consensus size: 40
63885814 AGATGTAGCC
*
63885824 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
**
63885864 GTTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
63885904 ACGCGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
63885944 ACTCGCACAAATACCATCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
63885984 ACTCGCACAAATGCCTTTGGTACTTAGCCCGGA-ATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
*
63886024 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
63886056 TTATCATCCG
Statistics
Matches: 172, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 1 0.01
40 171 0.99
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:63895342 original size:40 final size:40
Alignment explanation
Indices: 63895265--63895562 Score: 519
Period size: 40 Copynumber: 7.5 Consensus size: 40
63895255 AAACCAAGTA
* * * *
63895265 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
63895304 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63895344 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63895384 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63895424 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63895464 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63895504 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63895544 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
63895563 TTATCATCCG
Statistics
Matches: 251, Mismatches: 6, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
39 13 0.05
40 238 0.95
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63901244 original size:3 final size:3
Alignment explanation
Indices: 63901221--63901260 Score: 57
Period size: 3 Copynumber: 14.0 Consensus size: 3
63901211 TCGTAATATA
*
63901221 ATT ATT -TT -TT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
63901261 TAAAAACTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 4 0.12
3 30 0.88
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (3 bp):
ATT
Found at i:63902003 original size:39 final size:39
Alignment explanation
Indices: 63901944--63902083 Score: 226
Period size: 39 Copynumber: 3.6 Consensus size: 39
63901934 ATCGTGATTT
* * *
63901944 GAAGCCTGAAGTCTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCTGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
63901983 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGTTAAACG
1 GAAGCCTGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
63902022 GAAGCCTGAAGGCTAACTGAAGCACACAAGTGCTAGACG
1 GAAGCCTGAAGGCTAACTGAAGCACACAAGTGCTAAACG
63902061 GAAGCCTGAAGGCTAACTGAAGC
1 GAAGCCTGAAGGCTAACTGAAGC
63902084 TCATCAGAGC
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 93 1.00
ACGTcount: A:0.36, C:0.22, G:0.27, T:0.14
Consensus pattern (39 bp):
GAAGCCTGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:63904034 original size:27 final size:27
Alignment explanation
Indices: 63904004--63904065 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
63903994 AACAAAATAT
* **
63904004 TAAACATGGGATAGTCCATTGGGACAC
1 TAAACATGGGATAGCCCATAAGGACAC
*
63904031 TAAACATGGGATAGCCCGTAAGGACAC
1 TAAACATGGGATAGCCCATAAGGACAC
63904058 TAAACATG
1 TAAACATG
63904066 AAGGTCCTGG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.19
Consensus pattern (27 bp):
TAAACATGGGATAGCCCATAAGGACAC
Found at i:63906598 original size:74 final size:74
Alignment explanation
Indices: 63906472--63906618 Score: 258
Period size: 74 Copynumber: 2.0 Consensus size: 74
63906462 TTTGTTATAT
* *
63906472 TGTGTATTGAAAAGGGTGTTATTTATGCACAATGAAAATTTATTGAACGATATTGATTGATACCA
1 TGTGTATTGAAAAGGGTGCTATTTATGCACAATGAAAATTTACTGAACGATATTGATTGATACCA
63906537 ATACAATGA
66 ATACAATGA
* *
63906546 TGTGTATTGAAAAGGGTGCTATTTATGCACAATGAAAATTTACTGAATGATATTGATTGATACTA
1 TGTGTATTGAAAAGGGTGCTATTTATGCACAATGAAAATTTACTGAACGATATTGATTGATACCA
63906611 ATACAATG
66 ATACAATG
63906619 GTAATTGGAA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.37, C:0.08, G:0.19, T:0.35
Consensus pattern (74 bp):
TGTGTATTGAAAAGGGTGCTATTTATGCACAATGAAAATTTACTGAACGATATTGATTGATACCA
ATACAATGA
Found at i:63914803 original size:26 final size:26
Alignment explanation
Indices: 63914774--63914933 Score: 275
Period size: 26 Copynumber: 6.2 Consensus size: 26
63914764 TGGTACAAAT
63914774 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
63914800 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
63914826 TGATAATGAGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
63914852 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
63914878 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
63914904 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
63914930 TGAT
1 TGAT
63914934 GGGCATTTCA
Statistics
Matches: 125, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 125 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:63927957 original size:26 final size:26
Alignment explanation
Indices: 63927928--63928000 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 26
63927918 AATTTTCTCC
63927928 AAATTTTATTAGGGGTAAAATCATCA
1 AAATTTTATTAGGGGTAAAATCATCA
** **
63927954 AAATTTTAACAGGGGATAAAATTGTCA
1 AAATTTTATTAGGGG-TAAAATCATCA
*
63927981 AAATTTTATTA-GAGTAAAAT
1 AAATTTTATTAGGGGTAAAAT
63928001 TTGGATCAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
25 6 0.15
26 15 0.38
27 18 0.46
ACGTcount: A:0.45, C:0.05, G:0.15, T:0.34
Consensus pattern (26 bp):
AAATTTTATTAGGGGTAAAATCATCA
Found at i:63932718 original size:19 final size:19
Alignment explanation
Indices: 63932679--63932718 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
63932669 CACGTTCACC
*
63932679 TTTCTCTCTTTTTTTGGTT
1 TTTCTCTCTTTTTTTAGTT
*
63932698 TTTCTTTCTTTTTTTA-TT
1 TTTCTCTCTTTTTTTAGTT
63932716 TTT
1 TTT
63932719 GGTAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.03, C:0.12, G:0.05, T:0.80
Consensus pattern (19 bp):
TTTCTCTCTTTTTTTAGTT
Found at i:63948950 original size:21 final size:21
Alignment explanation
Indices: 63948924--63948966 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
63948914 TTCCTTGTCC
63948924 CATTCCATACTTTGTCACTTA
1 CATTCCATACTTTGTCACTTA
63948945 CATTCCATACTTTGTCACTTA
1 CATTCCATACTTTGTCACTTA
63948966 C
1 C
63948967 CGCATATCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.30, G:0.05, T:0.42
Consensus pattern (21 bp):
CATTCCATACTTTGTCACTTA
Found at i:63953890 original size:53 final size:53
Alignment explanation
Indices: 63953790--63953996 Score: 144
Period size: 53 Copynumber: 3.8 Consensus size: 53
63953780 TTCATTTTTA
* * ** *
63953790 AACTTACCATTGCCATGTCTTGGCATAGTCTTATGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGGCATAGTCTTACATGGGATCCTTGCCTTATG
* * *
63953843 AACTCACCATTGCCATGCCTTGGCATGGTTTTACATGGGATCTTTGCCTTATTG
1 AACTCACCATTGCCATGCCTTGGCATAGTCTTACATGGGATCCTTGCCTTA-TG
** * ** * * * * *** * *
63953897 TATTTTATTAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTCACCATTGCCATGCCTTGGCATAGTCTTACATGGGATCCTTGCCTTAT-G
* * * * *
63953952 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTCACCATTGCCATGCCTTGGCATAGTCTTACATGGGATCCTT
63953997 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 32, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 43 0.36
54 39 0.33
55 37 0.31
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.40
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGGCATAGTCTTACATGGGATCCTTGCCTTATG
Found at i:63957344 original size:27 final size:27
Alignment explanation
Indices: 63957274--63957554 Score: 480
Period size: 27 Copynumber: 10.6 Consensus size: 27
63957264 TAAATTGTGC
*
63957274 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
63957301 AG--CTTA--GTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
63957324 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
63957351 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
63957378 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
63957405 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
63957432 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
63957459 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
63957486 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
63957513 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
63957540 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63957555 GACTCAATAT
Statistics
Matches: 244, Mismatches: 6, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
23 19 0.08
25 6 0.02
27 219 0.90
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:63975319 original size:22 final size:24
Alignment explanation
Indices: 63975274--63975321 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
63975264 TAATCTTTAA
63975274 TATATAATTATATCTATTATAATT
1 TATATAATTATATCTATTATAATT
63975298 TATAT-ATTA-ATCT-TTATCAATT
1 TATATAATTATATCTATTAT-AATT
63975320 TA
1 TA
63975322 GCATAGAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 4 0.17
24 5 0.22
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATAATTATATCTATTATAATT
Found at i:63985766 original size:27 final size:27
Alignment explanation
Indices: 63985736--63985922 Score: 250
Period size: 27 Copynumber: 7.0 Consensus size: 27
63985726 CCCTAATTGA
* *
63985736 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGATTGTTTTGCCCTTATGTGG
63985763 TAAAATGATTGTTTTGCCCTTATGTGG
1 TAAAATGATTGTTTTGCCCTTATGTGG
*
63985790 TAAAATGATTGTTTTGCCCTTATATGG
1 TAAAATGATTGTTTTGCCCTTATGTGG
* *
63985817 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGATTGTTTTGCCCTTATGTGG
* *
63985844 TAAAATGTTTGTTTTTCCCTTATGTGG
1 TAAAATGATTGTTTTGCCCTTATGTGG
** * **
63985871 TAAGTTGACTGTTTTGCCCTTACATGG
1 TAAAATGATTGTTTTGCCCTTATGTGG
*
63985898 TAAGATGATTGTTTTGCCC-TATGTG
1 TAAAATGATTGTTTTGCCCTTATGTG
63985923 ATGTATTTAT
Statistics
Matches: 139, Mismatches: 21, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 4 0.03
27 135 0.97
ACGTcount: A:0.22, C:0.13, G:0.20, T:0.44
Consensus pattern (27 bp):
TAAAATGATTGTTTTGCCCTTATGTGG
Found at i:63985871 original size:81 final size:81
Alignment explanation
Indices: 63985736--63985922 Score: 286
Period size: 81 Copynumber: 2.3 Consensus size: 81
63985726 CCCTAATTGA
*
63985736 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGATTGTTTTGCCCTTATGTGGTAAAATGATTG
1 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACTG
*
63985801 TTTTGCCCTTATATGG
66 TTTTGCCCTTACATGG
* * **
63985817 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGTTTGTTTTTCCCTTATGTGGTAAGTTGACTG
1 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACTG
63985882 TTTTGCCCTTACATGG
66 TTTTGCCCTTACATGG
* * *
63985898 TAAGATGATTGTTTTGCCC-TATGTG
1 TAAAATGACTATTTTGCCCTTATGTG
63985923 ATGTATTTAT
Statistics
Matches: 97, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 6 0.06
81 91 0.94
ACGTcount: A:0.22, C:0.13, G:0.20, T:0.44
Consensus pattern (81 bp):
TAAAATGACTATTTTGCCCTTATGTGGTAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACTG
TTTTGCCCTTACATGG
Found at i:63989508 original size:27 final size:27
Alignment explanation
Indices: 63989467--63989680 Score: 216
Period size: 27 Copynumber: 8.0 Consensus size: 27
63989457 CGCTAATTGA
* * *
63989467 TAAAATTACTATTTTTCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
63989494 TAAAATGACTGTTTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
63989521 TAATATGACTGTCTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
** *
63989548 TAAAATGACTGTTTTGCTTTTATGTTG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
63989575 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * * * *
63989602 TAAGATGATTGTTTTACCTTTATGTAG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * **
63989629 TAAAATGACTATGTTT-CCCCTACATGG
1 TAAAATGACTGT-TTTGCCCTTATGTGG
*
63989656 TAAGATGACTGTTTTGCCC-TATGTG
1 TAAAATGACTGTTTTGCCCTTATGTG
63989681 ATGTATATAT
Statistics
Matches: 151, Mismatches: 34, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
26 7 0.05
27 141 0.93
28 3 0.02
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.43
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGG
Found at i:63990028 original size:24 final size:24
Alignment explanation
Indices: 63989996--63990071 Score: 98
Period size: 24 Copynumber: 3.2 Consensus size: 24
63989986 AGGACTTGTA
* *
63989996 TACTATTACTGCATTGATTACCGT
1 TACTATTACTGCACTGATTACTGT
*
63990020 TACTATTACTGCACTGATTATTGT
1 TACTATTACTGCACTGATTACTGT
* * *
63990044 TACTGTTACTACACTGATTTCTGT
1 TACTATTACTGCACTGATTACTGT
63990068 TACT
1 TACT
63990072 GTACTGTTTA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.45
Consensus pattern (24 bp):
TACTATTACTGCACTGATTACTGT
Found at i:63990048 original size:18 final size:18
Alignment explanation
Indices: 63990046--63990092 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
63990036 ATTATTGTTA
*
63990046 CTGTTACTACACTGATTT
1 CTGTTACTGCACTGATTT
*
63990064 CTGTTACTGTACTG-TTT
1 CTGTTACTGCACTGATTT
*
63990081 ATTGTTACTGCA
1 -CTGTTACTGCA
63990093 ATAGGCCAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 3 0.12
18 21 0.88
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (18 bp):
CTGTTACTGCACTGATTT
Found at i:63990771 original size:65 final size:65
Alignment explanation
Indices: 63990667--63991532 Score: 1330
Period size: 65 Copynumber: 13.3 Consensus size: 65
63990657 NNNNNNTTAT
** *
63990667 GTTTTTAATTGTTTAGGGTTTTTCAGCTTGATTAGGGTTTAGGAAAAATTAAATTAGGGTATTAG
1 GTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGTTTAGGAAAAATTAAATTAGGGTATTAG
*
63990732 GTTTTTAATTGTTTA-GGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTATTA
1 GTTTTTAATTGTTTAGGGTTTTT-GGGTTTGATTAGGGTTTAGGAAAAATTAAATTAGGGTATTA
*
63990796 T
65 G
* * *
63990797 TTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTATTAG
1 GTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGTTTAGGAAAAATTAAATTAGGGTATTAG
*
63990862 GTTTTTAATTGTTTA-GGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTATTA
1 GTTTTTAATTGTTTAGGGTTTTT-GGGTTTGATTAGGGTTTAGGAAAAATTAAATTAGGGTATTA
*
63990926 T
65 G
* * *
63990927 TTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTATTAG
1 GTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGTTTAGGAAAAATTAAATTAGGGTATTAG
*
63990992 GTTTTTAATTGTTTA-GGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTATTA
1 GTTTTTAATTGTTTAGGGTTTTT-GGGTTTGATTAGGGTTTAGGAAAAATTAAATTAGGGTATTA
*
63991056 T
65 G
* * *
63991057 TTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTATTAG
1 GTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGTTTAGGAAAAATTAAATTAGGGTATTAG
*
63991122 GTTTTTAATTGTTTA-GGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTATTA
1 GTTTTTAATTGTTTAGGGTTTTT-GGGTTTGATTAGGGTTTAGGAAAAATTAAATTAGGGTATTA
*
63991186 T
65 G
* * *
63991187 TTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTATTAG
1 GTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGTTTAGGAAAAATTAAATTAGGGTATTAG
*
63991252 GTTTTTAATTGTTTA-GGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTATTA
1 GTTTTTAATTGTTTAGGGTTTTT-GGGTTTGATTAGGGTTTAGGAAAAATTAAATTAGGGTATTA
*
63991316 T
65 G
* * *
63991317 TTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTATTAG
1 GTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGTTTAGGAAAAATTAAATTAGGGTATTAG
*
63991382 GTTTTTAATTGTTTA-GGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTATTA
1 GTTTTTAATTGTTTAGGGTTTTT-GGGTTTGATTAGGGTTTAGGAAAAATTAAATTAGGGTATTA
*
63991446 T
65 G
* * *
63991447 TTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTATTAG
1 GTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGTTTAGGAAAAATTAAATTAGGGTATTAG
*
63991512 GTTTTTAATTGTTTAAGGTTT
1 GTTTTTAATTGTTTAGGGTTT
63991533 AATTTTTTTA
Statistics
Matches: 727, Mismatches: 62, Indels: 24
0.89 0.08 0.03
Matches are distributed among these distances:
64 42 0.06
65 643 0.88
66 42 0.06
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (65 bp):
GTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGTTTAGGAAAAATTAAATTAGGGTATTAG
Found at i:63990901 original size:130 final size:130
Alignment explanation
Indices: 63990663--63991532 Score: 1677
Period size: 130 Copynumber: 6.7 Consensus size: 130
63990653 NNNNNNNNNN
* ** * * *
63990663 TTATGTTTTTAATTGTTTAGGGTTTTTCAGCTTGATTAGGGTTTAGGAAAAATTAAATTAGGGTA
1 TTATTTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTA
63990728 TTAGGTTTTTAATTGTTTAGGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTA
66 TTAGGTTTTTAATTGTTTAGGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTA
63990793 TTATTTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTA
1 TTATTTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTA
63990858 TTAGGTTTTTAATTGTTTAGGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTA
66 TTAGGTTTTTAATTGTTTAGGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTA
63990923 TTATTTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTA
1 TTATTTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTA
63990988 TTAGGTTTTTAATTGTTTAGGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTA
66 TTAGGTTTTTAATTGTTTAGGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTA
63991053 TTATTTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTA
1 TTATTTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTA
63991118 TTAGGTTTTTAATTGTTTAGGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTA
66 TTAGGTTTTTAATTGTTTAGGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTA
63991183 TTATTTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTA
1 TTATTTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTA
63991248 TTAGGTTTTTAATTGTTTAGGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTA
66 TTAGGTTTTTAATTGTTTAGGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTA
63991313 TTATTTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTA
1 TTATTTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTA
63991378 TTAGGTTTTTAATTGTTTAGGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTA
66 TTAGGTTTTTAATTGTTTAGGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTA
63991443 TTATTTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTA
1 TTATTTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTA
63991508 TTAGGTTTTTAATTGTTTAAGGTTT
66 TTAGGTTTTTAATTGTTT-AGGTTT
63991533 AATTTTTTTA
Statistics
Matches: 733, Mismatches: 6, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
130 727 0.99
131 6 0.01
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (130 bp):
TTATTTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAGGGATTAGAAAAAATTAAATTAGGGTA
TTAGGTTTTTAATTGTTTAGGTTTTTGGGGTTTGATTAGGGTTTAGGAAAATTTAAATTAGGGTA
Found at i:63991642 original size:29 final size:29
Alignment explanation
Indices: 63991564--63991642 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
63991554 TTGTTCAAGG
* *
63991564 AAAAATAATTTTGACAATATGGGTTTTGA
1 AAAAATAATTTTGACAAGATGGGTTCTGA
* * *
63991593 AAAAATAAATTT-ACCATGATGTGTTCTGA
1 AAAAATAATTTTGA-CAAGATGGGTTCTGA
*
63991622 AAAAATTATTTTGACAAGATG
1 AAAAATAATTTTGACAAGATG
63991643 ATTTTTTTTT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
28 1 0.03
29 38 0.95
30 1 0.03
ACGTcount: A:0.43, C:0.06, G:0.15, T:0.35
Consensus pattern (29 bp):
AAAAATAATTTTGACAAGATGGGTTCTGA
Found at i:63992395 original size:50 final size:48
Alignment explanation
Indices: 63992312--63992406 Score: 136
Period size: 50 Copynumber: 1.9 Consensus size: 48
63992302 TATGGCTTGT
* * *
63992312 CATGAATCCTAAATCAATATATAATCTGGATCACATGCTAACTCCTAC
1 CATGAATCCTAAACCAACATATAATCTGGATCACACGCTAACTCCTAC
*
63992360 CATGAATCCTAAACCATGACATGTAATCTGGATCACACGCTAACTCC
1 CATGAATCCTAAACCA--ACATATAATCTGGATCACACGCTAACTCC
63992407 GGAACGATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
48 15 0.37
50 26 0.63
ACGTcount: A:0.36, C:0.27, G:0.11, T:0.26
Consensus pattern (48 bp):
CATGAATCCTAAACCAACATATAATCTGGATCACACGCTAACTCCTAC
Found at i:63992504 original size:39 final size:38
Alignment explanation
Indices: 63992450--63992526 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 38
63992440 TCATATCGAT
63992450 TTTCCTACATTTCAATATATTCTTAGTGGAAGAGCGGC
1 TTTCCTACATTTCAATATATTCTTAGTGGAAGAGCGGC
*
63992488 NTTTCCTACATTTCAATATATTCTTAGTTGAAGAGCGGC
1 -TTTCCTACATTTCAATATATTCTTAGTGGAAGAGCGGC
63992527 CAATGTGTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.38
Consensus pattern (38 bp):
TTTCCTACATTTCAATATATTCTTAGTGGAAGAGCGGC
Found at i:63993702 original size:21 final size:21
Alignment explanation
Indices: 63993676--63993748 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 21
63993666 TACCGGCTAT
63993676 TATTAAAAAAATTATAAAAAA
1 TATTAAAAAAATTATAAAAAA
** **
63993697 TATTAATTAAATTATAAAATT
1 TATTAAAAAAATTATAAAAAA
* *
63993718 TA-AATAAAAAATT-TAAATAA
1 TATTA-AAAAAATTATAAAAAA
63993738 TATTAAAAAAA
1 TATTAAAAAAA
63993749 CGAAATTAAC
Statistics
Matches: 39, Mismatches: 11, Indels: 5
0.71 0.20 0.09
Matches are distributed among these distances:
20 13 0.33
21 26 0.67
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
TATTAAAAAAATTATAAAAAA
Found at i:63993720 original size:14 final size:14
Alignment explanation
Indices: 63993703--63993735 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
63993693 AAAATATTAA
*
63993703 TTAAATTATAAAAT
1 TTAAATTAAAAAAT
63993717 TTAAA-TAAAAAAT
1 TTAAATTAAAAAAT
63993730 TTAAAT
1 TTAAAT
63993736 AATATTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
TTAAATTAAAAAAT
Found at i:63993728 original size:13 final size:13
Alignment explanation
Indices: 63993712--63993737 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63993702 ATTAAATTAT
63993712 AAAATTTAAATAA
1 AAAATTTAAATAA
63993725 AAAATTTAAATAA
1 AAAATTTAAATAA
63993738 TATTAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAATTTAAATAA
Found at i:63994964 original size:31 final size:31
Alignment explanation
Indices: 63994924--63995009 Score: 109
Period size: 31 Copynumber: 2.7 Consensus size: 31
63994914 AACCCTTCCT
*
63994924 GCATTAAATCCAACCAAAAACAGCAAATATA
1 GCATAAAATCCAACCAAAAACAGCAAATATA
* * *
63994955 GCATGAAATCTAACCAAAAACAGCAAATGTA
1 GCATAAAATCCAACCAAAAACAGCAAATATA
*
63994986 GCATAAAAAATACAACCAAAAACA
1 GCAT--AAAATCCAACCAAAAACA
63995010 TTAAATCTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
31 32 0.68
33 15 0.32
ACGTcount: A:0.57, C:0.21, G:0.08, T:0.14
Consensus pattern (31 bp):
GCATAAAATCCAACCAAAAACAGCAAATATA
Found at i:63995268 original size:21 final size:21
Alignment explanation
Indices: 63995244--63995298 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
63995234 ACTGCCATCA
63995244 CTGCTGCCTCTGCCTCCCTCG
1 CTGCTGCCTCTGCCTCCCTCG
* *
63995265 CTGCTACCGCTGCCTCCCTCG
1 CTGCTGCCTCTGCCTCCCTCG
63995286 CTGCTGCCTCTGC
1 CTGCTGCCTCTGC
63995299 TCTAAGTTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.02, C:0.51, G:0.20, T:0.27
Consensus pattern (21 bp):
CTGCTGCCTCTGCCTCCCTCG
Found at i:63995712 original size:11 final size:11
Alignment explanation
Indices: 63995696--63995720 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63995686 TTAAAACTAC
63995696 TAACGACGAAT
1 TAACGACGAAT
63995707 TAACGACGAAT
1 TAACGACGAAT
63995718 TAA
1 TAA
63995721 AACATTATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.20
Consensus pattern (11 bp):
TAACGACGAAT
Found at i:63995738 original size:13 final size:14
Alignment explanation
Indices: 63995715--63995743 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
63995705 ATTAACGACG
63995715 AATTAAAACATTAT
1 AATTAAAACATTAT
63995729 AATT-AAACATTAT
1 AATTAAAACATTAT
63995742 AA
1 AA
63995744 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAAACATTAT
Found at i:64000809 original size:9 final size:9
Alignment explanation
Indices: 64000795--64000938 Score: 55
Period size: 9 Copynumber: 16.0 Consensus size: 9
64000785 TAAGTATAAT
64000795 TAAGTTATG
1 TAAGTTATG
64000804 TAAGTTATG
1 TAAGTTATG
* * *
64000813 ATATGATATA
1 -TAAGTTATG
*
64000823 T-ATTTATG
1 TAAGTTATG
*
64000831 T-A-CTATG
1 TAAGTTATG
64000838 TAAGTTATG
1 TAAGTTATG
*
64000847 TAAATTATG
1 TAAGTTATG
* *
64000856 TACGATATGATA
1 TAAG-T-T-ATG
*
64000868 TATATTTATG
1 TA-AGTTATG
64000878 T-A-TTATG
1 TAAGTTATG
64000885 TAAGTTATG
1 TAAGTTATG
* *
64000894 CAAATTATG
1 TAAGTTATG
* *
64000903 TAAGTTGTT
1 TAAGTTATG
**
64000912 TATCTTATG
1 TAAGTTATG
*
64000921 TAAATTATG
1 TAAGTTATG
*
64000930 TAAGATATG
1 TAAGTTATG
64000939 ATATATATTT
Statistics
Matches: 96, Mismatches: 30, Indels: 18
0.67 0.21 0.12
Matches are distributed among these distances:
7 11 0.11
8 8 0.08
9 60 0.62
10 10 0.10
11 2 0.02
12 5 0.05
ACGTcount: A:0.35, C:0.03, G:0.16, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:64000844 original size:43 final size:43
Alignment explanation
Indices: 64000795--64000902 Score: 153
Period size: 47 Copynumber: 2.4 Consensus size: 43
64000785 TAAGTATAAT
*
64000795 TAAGTTATGTAAGTTATGATATGATATATATTTATGTACTATG
1 TAAGTTATGTAAATTATGATATGATATATATTTATGTACTATG
*
64000838 TAAGTTATGTAAATTATGTACGATATGATATATATTTATGTATTATG
1 TAAGTTATGTAAATTA--T--GATATGATATATATTTATGTACTATG
*
64000885 TAAGTTATGCAAATTATG
1 TAAGTTATGTAAATTATG
64000903 TAAGTTGTTT
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
43 16 0.28
45 2 0.03
47 40 0.69
ACGTcount: A:0.36, C:0.03, G:0.16, T:0.45
Consensus pattern (43 bp):
TAAGTTATGTAAATTATGATATGATATATATTTATGTACTATG
Found at i:64000857 original size:18 final size:18
Alignment explanation
Indices: 64000834--64000938 Score: 61
Period size: 18 Copynumber: 5.7 Consensus size: 18
64000824 ATTTATGTAC
64000834 TATGTAAGTTATGTAAAT
1 TATGTAAGTTATGTAAAT
* *
64000852 TATGTACGATATGATATATATT
1 TATGTAAGTTATG-TA-A-A-T
*
64000874 TATGT-A-TTATGTAAGT
1 TATGTAAGTTATGTAAAT
* * *
64000890 TATGCAAATTATGTAAGT
1 TATGTAAGTTATGTAAAT
* * **
64000908 TGTTTATCTTATGTAAAT
1 TATGTAAGTTATGTAAAT
*
64000926 TATGTAAGATATG
1 TATGTAAGTTATG
64000939 ATATATATTT
Statistics
Matches: 64, Mismatches: 17, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
16 5 0.08
17 1 0.02
18 42 0.66
19 4 0.06
20 5 0.08
21 1 0.02
22 6 0.09
ACGTcount: A:0.35, C:0.03, G:0.16, T:0.46
Consensus pattern (18 bp):
TATGTAAGTTATGTAAAT
Found at i:64000875 original size:47 final size:47
Alignment explanation
Indices: 64000812--64000904 Score: 168
Period size: 47 Copynumber: 2.0 Consensus size: 47
64000802 TGTAAGTTAT
*
64000812 GATATGATATATATTTATGTACTATGTAAGTTATGTAAATTATGTAC
1 GATATGATATATATTTATGTACTATGTAAGTTATGCAAATTATGTAC
*
64000859 GATATGATATATATTTATGTATTATGTAAGTTATGCAAATTATGTA
1 GATATGATATATATTTATGTACTATGTAAGTTATGCAAATTATGTA
64000905 AGTTGTTTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.45
Consensus pattern (47 bp):
GATATGATATATATTTATGTACTATGTAAGTTATGCAAATTATGTAC
Found at i:64001316 original size:98 final size:100
Alignment explanation
Indices: 64001204--64001486 Score: 437
Period size: 103 Copynumber: 2.8 Consensus size: 100
64001194 CAATATTTAA
* * * *
64001204 AAATACAATTTAATTTAATTAGATTATTTAACAA-AAAATAAAAGTAAACAAAATATTTTTCGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTT-GTG
64001268 ATTAAAATAAAATAAAAAATA-TTT-AAAAAACTTT
65 ATTAAAATAAAATAAAAAATATTTTAAAAAAACTTT
* * *
64001302 AAATATAATATAATTTAATTAGGTAATTTAAAAATAAAATAAGAGTAGACAAAATATTTTTGTGA
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTGTGA
64001367 TTAAAATAAAATGCAATAAAATATTTTAAAAAAACTTT
66 TTAAAATAAAAT--AA-AAAATATTTTAAAAAAACTTT
64001405 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTTGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATA-TTTTTGTG
64001470 ATTAAAATAAAATAAAA
65 ATTAAAATAAAATAAAA
64001487 TAACATATTC
Statistics
Matches: 168, Mismatches: 10, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
98 45 0.27
99 24 0.14
100 2 0.01
101 8 0.05
102 5 0.03
103 63 0.38
104 21 0.12
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (100 bp):
AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTGTGA
TTAAAATAAAATAAAAAATATTTTAAAAAAACTTT
Found at i:64004560 original size:9 final size:9
Alignment explanation
Indices: 64004546--64004602 Score: 66
Period size: 9 Copynumber: 6.7 Consensus size: 9
64004536 AAGTTTAAAT
64004546 CATTAAAAA
1 CATTAAAAA
64004555 CATTAAAAA
1 CATTAAAAA
*
64004564 CATT-AAAT
1 CATTAAAAA
64004572 CATTAAAAA
1 CATTAAAAA
* *
64004581 AATT--AAT
1 CATTAAAAA
64004588 CATTAAAAA
1 CATTAAAAA
64004597 CATTAA
1 CATTAA
64004603 TTTTCATTTG
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
7 5 0.13
8 7 0.18
9 27 0.69
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (9 bp):
CATTAAAAA
Found at i:64004588 original size:16 final size:16
Alignment explanation
Indices: 64004555--64004603 Score: 80
Period size: 16 Copynumber: 3.0 Consensus size: 16
64004545 TCATTAAAAA
64004555 CATTAAAAACATTAAAT
1 CATTAAAAACATT-AAT
*
64004572 CATTAAAAAAATTAAT
1 CATTAAAAACATTAAT
64004588 CATTAAAAACATTAAT
1 CATTAAAAACATTAAT
64004604 TTTCATTTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 18 0.60
17 12 0.40
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.31
Consensus pattern (16 bp):
CATTAAAAACATTAAT
Found at i:64006420 original size:60 final size:59
Alignment explanation
Indices: 64006354--64006748 Score: 213
Period size: 60 Copynumber: 6.7 Consensus size: 59
64006344 TAAATTAATT
*
64006354 TTATTAATCTTTTAAATAAAATAAAATTAATTTGTATAATTTTATAAACTTTTAATAAAA
1 TTATTAATCTTTTAAATAAAATAAAATTAATTTGTATAATTTTATAAA-TTTAAATAAAA
* *
64006414 TTATTAAACTTTTAAATAAAATAAAATTAATTTGTATAATTATATAAACTTTTAAAT--AA
1 TTATTAATCTTTTAAATAAAATAAAATTAATTTGTATAATTTTATAAA--TTTAAATAAAA
** *
64006473 TT-TT-A--TTTTATTTAAAAGT-AAATTAATTT-TATTAATCTTT-TAAA-TAAAATAAAA
1 TTATTAATCTTTTAAATAAAA-TAAAATTAATTTGTA-TAAT-TTTATAAATTTAAATAAAA
** * *
64006527 TTAATTTGTATAAT-TTTATAAACTTTTAATAAAATT-A--T-TA-AACTTT-TAAA-TAAAATA
1 TT-A----T-TAATCTTT-TAAA--TAAAATAAAATTAATTTGTATAATTTTATAAATTTAAATA
64006584 AAA
57 AAA
** * * ** * * * ** **
64006587 TTAATTTGTATAATTATTTAAACTTTTAAA-TAATTT-TAT--TTTATTTAAAAGTAAATTAATT
1 TT-ATTAATCT-TTTAAATAAA--ATAAAATTAATTTGTATAATTT-TATAAATTTAAA-TAAAA
*
64006648 TTATTAATCTTTTAAATAAAATAAAATTAATTTGTATAATTTTATAAACTTTTAATAAAA
1 TTATTAATCTTTTAAATAAAATAAAATTAATTTGTATAATTTTATAAA-TTTAAATAAAA
*
64006708 TTATTAAACTTTTAAATAAAATAAAATTAATTTGTATAATT
1 TTATTAATCTTTTAAATAAAATAAAATTAATTTGTATAATT
64006749 NNNNNNNNNN
Statistics
Matches: 257, Mismatches: 42, Indels: 72
0.69 0.11 0.19
Matches are distributed among these distances:
52 5 0.02
54 8 0.03
55 31 0.12
56 12 0.05
57 8 0.03
58 12 0.05
59 18 0.07
60 124 0.48
61 20 0.08
62 1 0.00
63 6 0.02
64 2 0.01
65 2 0.01
66 8 0.03
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.48
Consensus pattern (59 bp):
TTATTAATCTTTTAAATAAAATAAAATTAATTTGTATAATTTTATAAATTTAAATAAAA
Found at i:64006474 original size:20 final size:20
Alignment explanation
Indices: 64006389--64006474 Score: 70
Period size: 20 Copynumber: 4.3 Consensus size: 20
64006379 ATTAATTTGT
*
64006389 ATAATTTTATAAACTTTTAA
1 ATAATTATATAAACTTTTAA
*
64006409 TAAAATTAT-TAAACTTTTAA
1 -ATAATTATATAAACTTTTAA
* * **
64006429 ATAA-AATA-AAATTAATTTGT
1 ATAATTATATAAACT--TTTAA
64006449 ATAATTATATAAACTTTTAA
1 ATAATTATATAAACTTTTAA
64006469 ATAATT
1 ATAATT
64006475 TTATTTTATT
Statistics
Matches: 49, Mismatches: 11, Indels: 11
0.69 0.15 0.15
Matches are distributed among these distances:
18 6 0.12
19 3 0.06
20 27 0.55
21 9 0.18
22 4 0.08
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.45
Consensus pattern (20 bp):
ATAATTATATAAACTTTTAA
Found at i:64006535 original size:147 final size:147
Alignment explanation
Indices: 64006268--64006748 Score: 953
Period size: 147 Copynumber: 3.3 Consensus size: 147
64006258 AAATAATTTG
64006268 TATTAAACTTTTAAATAAAATAAAATTAATTTGTATAATTATTTAAACTTTTAAATAATTTTATT
1 TATTAAACTTTTAAATAAAATAAAATTAATTTGTATAATTATTTAAACTTTTAAATAATTTTATT
64006333 TTATTTAAAAGTAAATTAATTTTATTAATCTTTTAAATAAAATAAAATTAATTTGTATAATTTTA
66 TTATTTAAAAGTAAATTAATTTTATTAATCTTTTAAATAAAATAAAATTAATTTGTATAATTTTA
64006398 TAAACTTTTAATAAAAT
131 TAAACTTTTAATAAAAT
*
64006415 TATTAAACTTTTAAATAAAATAAAATTAATTTGTATAATTATATAAACTTTTAAATAATTTTATT
1 TATTAAACTTTTAAATAAAATAAAATTAATTTGTATAATTATTTAAACTTTTAAATAATTTTATT
64006480 TTATTTAAAAGTAAATTAATTTTATTAATCTTTTAAATAAAATAAAATTAATTTGTATAATTTTA
66 TTATTTAAAAGTAAATTAATTTTATTAATCTTTTAAATAAAATAAAATTAATTTGTATAATTTTA
64006545 TAAACTTTTAATAAAAT
131 TAAACTTTTAATAAAAT
64006562 TATTAAACTTTTAAATAAAATAAAATTAATTTGTATAATTATTTAAACTTTTAAATAATTTTATT
1 TATTAAACTTTTAAATAAAATAAAATTAATTTGTATAATTATTTAAACTTTTAAATAATTTTATT
64006627 TTATTTAAAAGTAAATTAATTTTATTAATCTTTTAAATAAAATAAAATTAATTTGTATAATTTTA
66 TTATTTAAAAGTAAATTAATTTTATTAATCTTTTAAATAAAATAAAATTAATTTGTATAATTTTA
64006692 TAAACTTTTAATAAAAT
131 TAAACTTTTAATAAAAT
64006709 TATTAAACTTTTAAATAAAATAAAATTAATTTGTATAATT
1 TATTAAACTTTTAAATAAAATAAAATTAATTTGTATAATT
64006749 NNNNNNNNNN
Statistics
Matches: 332, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
147 332 1.00
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (147 bp):
TATTAAACTTTTAAATAAAATAAAATTAATTTGTATAATTATTTAAACTTTTAAATAATTTTATT
TTATTTAAAAGTAAATTAATTTTATTAATCTTTTAAATAAAATAAAATTAATTTGTATAATTTTA
TAAACTTTTAATAAAAT
Found at i:64006604 original size:39 final size:39
Alignment explanation
Indices: 64006559--64006708 Score: 124
Period size: 39 Copynumber: 3.6 Consensus size: 39
64006549 CTTTTAATAA
64006559 AATTATTAAACTTTTAAATAAAATAAAATTAATTTGTAT
1 AATTATTAAACTTTTAAATAAAATAAAATTAATTTGTAT
* ** * *
64006598 AATTATTTAAACTTTTAAAT-AATTTTATTTTATTTAAAAGTAAATT
1 AATTA-TTAAACTTTTAAATAAAATAAAATTAATTT----GT--A-T
*
64006644 AATTTTATTAATCTTTTAAATAAAATAAAATTAATTTGTAT
1 AA--TTATTAAACTTTTAAATAAAATAAAATTAATTTGTAT
*
64006685 AATTTTATAAACTTTT-AATAAAAT
1 AATTAT-TAAACTTTTAAATAAAAT
64006709 TATTAAACTT
Statistics
Matches: 86, Mismatches: 13, Indels: 24
0.70 0.11 0.20
Matches are distributed among these distances:
39 26 0.30
40 22 0.26
41 3 0.03
42 1 0.01
43 2 0.02
44 2 0.02
45 1 0.01
46 3 0.03
47 13 0.15
48 13 0.15
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (39 bp):
AATTATTAAACTTTTAAATAAAATAAAATTAATTTGTAT
Found at i:64006621 original size:20 final size:20
Alignment explanation
Indices: 64006536--64006621 Score: 54
Period size: 20 Copynumber: 4.3 Consensus size: 20
64006526 ATTAATTTGT
64006536 ATAATT-TTATAAACTTTTAA
1 ATAATTATT-TAAACTTTTAA
*
64006556 TAAAATTA-TTAAACTTTTAA
1 -ATAATTATTTAAACTTTTAA
* * * **
64006576 ATAA--AATAAAATTAATTTGT
1 ATAATTATTTAAACT--TTTAA
64006596 ATAATTATTTAAACTTTTAA
1 ATAATTATTTAAACTTTTAA
64006616 ATAATT
1 ATAATT
64006622 TTATTTTATT
Statistics
Matches: 48, Mismatches: 11, Indels: 13
0.67 0.15 0.18
Matches are distributed among these distances:
17 1 0.02
18 5 0.10
19 3 0.06
20 27 0.56
21 6 0.12
22 6 0.12
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (20 bp):
ATAATTATTTAAACTTTTAA
Found at i:64008437 original size:79 final size:82
Alignment explanation
Indices: 64008326--64008510 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
64008316 GCTACTCGTT
* *
64008326 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
64008389 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
64008406 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
64008469 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
64008486 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64008511 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:64008510 original size:40 final size:40
Alignment explanation
Indices: 64008307--64008510 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
64008297 CGGAATTTAA
** *
64008307 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
64008347 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
64008387 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
64008426 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
64008466 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
64008506 CCGGA
1 CCGGA
64008511 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:64009729 original size:57 final size:57
Alignment explanation
Indices: 64009636--64009765 Score: 197
Period size: 57 Copynumber: 2.3 Consensus size: 57
64009626 ATGAACAAAA
* * *
64009636 TTTTTCTTTTCTTTTCTTTAACTCACGGCAATGGGGGGGGGGGAAACAACCACACAC
1 TTTTTTTTTTCTTTTCTTTAACCCACGGCAAGGGGGGGGGGGGAAACAACCACACAC
* * *
64009693 TTTTTTTTTTTTTTTCTTTAACCCCCGGGAAGGGGGGGGGGGGAAACAACCACACAC
1 TTTTTTTTTTCTTTTCTTTAACCCACGGCAAGGGGGGGGGGGGAAACAACCACACAC
*
64009750 TTTTTTTTTTGTTTTC
1 TTTTTTTTTTCTTTTC
64009766 ATCATATTCC
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 66 1.00
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.38
Consensus pattern (57 bp):
TTTTTTTTTTCTTTTCTTTAACCCACGGCAAGGGGGGGGGGGGAAACAACCACACAC
Found at i:64010242 original size:21 final size:21
Alignment explanation
Indices: 64010218--64010271 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
64010208 TATATACCCT
*
64010218 AAACCTTAAACTCAAAATAAC
1 AAACCTTAAACCCAAAATAAC
** *
64010239 AAACCCCAAGCCCAAAATAAC
1 AAACCTTAAACCCAAAATAAC
64010260 AAACCTTAAACC
1 AAACCTTAAACC
64010272 ATAAACTTAA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.54, C:0.31, G:0.02, T:0.13
Consensus pattern (21 bp):
AAACCTTAAACCCAAAATAAC
Found at i:64011016 original size:18 final size:17
Alignment explanation
Indices: 64010993--64011027 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
64010983 AAAATCAGTT
*
64010993 TCAAATATCAAAATAAAA
1 TCAAAT-TCAAAACAAAA
64011011 TCAAATTCAAAACAAAA
1 TCAAATTCAAAACAAAA
64011028 ATAAGAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.66, C:0.14, G:0.00, T:0.20
Consensus pattern (17 bp):
TCAAATTCAAAACAAAA
Found at i:64011215 original size:41 final size:41
Alignment explanation
Indices: 64011170--64011530 Score: 485
Period size: 41 Copynumber: 8.8 Consensus size: 41
64011160 TTTTGACCAA
*
64011170 AAACGCCGCTATTGCTCGATTTTTAGTGGCGTTTGGACTTG
1 AAACGCCGCTATTGCTCGATTTTTAGTGGCGTTTGGACCTG
* * * ** *
64011211 AAACGCCGCTATTGCTCGGTTTTTACTGGCTTTTTCACTTG
1 AAACGCCGCTATTGCTCGATTTTTAGTGGCGTTTGGACCTG
* * *
64011252 AAACGCCGTTATTGCTCGGTTTTTAGTGGCGTTTGGACTTG
1 AAACGCCGCTATTGCTCGATTTTTAGTGGCGTTTGGACCTG
* *
64011293 AAACGCCGCTATTGCTTGGTTTTTAGTGGCG-TTGGACCTG
1 AAACGCCGCTATTGCTCGATTTTTAGTGGCGTTTGGACCTG
* *
64011333 AAACGCCACTATTGCTCGATTTTTAGTGGCGTTTGGAACTG
1 AAACGCCGCTATTGCTCGATTTTTAGTGGCGTTTGGACCTG
** * *
64011374 AAACATCACTATTGCTC-AGTTTTTAGTGGCGTTTGGACATG
1 AAACGCCGCTATTGCTCGA-TTTTTAGTGGCGTTTGGACCTG
* * *
64011415 AAACGTCGCTATTGCTCGGTTTTTAGTGGCATTTGGACCTG
1 AAACGCCGCTATTGCTCGATTTTTAGTGGCGTTTGGACCTG
64011456 AAACGCCGCTATTGCTCGATTTTTAGTGGCGTTTGGACCTG
1 AAACGCCGCTATTGCTCGATTTTTAGTGGCGTTTGGACCTG
*
64011497 AAACGCTGCTATTGCTC-AGTTTTTAGTGGCGTTT
1 AAACGCCGCTATTGCTCGA-TTTTTAGTGGCGTTT
64011531 TATTCTAAAC
Statistics
Matches: 286, Mismatches: 30, Indels: 8
0.88 0.09 0.02
Matches are distributed among these distances:
40 38 0.13
41 248 0.87
ACGTcount: A:0.18, C:0.20, G:0.25, T:0.37
Consensus pattern (41 bp):
AAACGCCGCTATTGCTCGATTTTTAGTGGCGTTTGGACCTG
Found at i:64011440 original size:163 final size:164
Alignment explanation
Indices: 64011170--64011530 Score: 530
Period size: 163 Copynumber: 2.2 Consensus size: 164
64011160 TTTTGACCAA
* * *
64011170 AAACGCCGCTATTGCTCGATTTTTAGTGGCGTTTGGACTTGAAACGCCGCTATTGCTCGGTTTTT
1 AAACGCCGCTATTGCTCGATTTTTAGTGGCGTTTGGACTTGAAACACCACTATTGCTCAGTTTTT
* * * * * *
64011235 ACTGGCTTTTTCACTTGAAACGCCGTTATTGCTCGGTTTTTAGTGGCGTTTGGACTTGAAACGCC
66 ACTGGCGTTTGCACATGAAACGCCGCTATTGCTCGGTTTTTAGTGGCATTTGGACCTGAAACGCC
* *
64011300 GCTATTGCTTGGTTTTTAGTGGCG-TTGGACCTG
131 GCTATTGCTCGATTTTTAGTGGCGTTTGGACCTG
* *
64011333 AAACGCCACTATTGCTCGATTTTTAGTGGCGTTTGGAAC-TGAAACATCACTATTGCTCAGTTTT
1 AAACGCCGCTATTGCTCGATTTTTAGTGGCGTTTGG-ACTTGAAACACCACTATTGCTCAGTTTT
* * *
64011397 TAGTGGCGTTTGGACATGAAACGTCGCTATTGCTCGGTTTTTAGTGGCATTTGGACCTGAAACGC
65 TACTGGCGTTTGCACATGAAACGCCGCTATTGCTCGGTTTTTAGTGGCATTTGGACCTGAAACGC
64011462 CGCTATTGCTCGATTTTTAGTGGCGTTTGGACCTG
130 CGCTATTGCTCGATTTTTAGTGGCGTTTGGACCTG
*
64011497 AAACGCTGCTATTGCTC-AGTTTTTAGTGGCGTTT
1 AAACGCCGCTATTGCTCGA-TTTTTAGTGGCGTTT
64011531 TATTCTAAAC
Statistics
Matches: 177, Mismatches: 18, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
163 136 0.77
164 41 0.23
ACGTcount: A:0.18, C:0.20, G:0.25, T:0.37
Consensus pattern (164 bp):
AAACGCCGCTATTGCTCGATTTTTAGTGGCGTTTGGACTTGAAACACCACTATTGCTCAGTTTTT
ACTGGCGTTTGCACATGAAACGCCGCTATTGCTCGGTTTTTAGTGGCATTTGGACCTGAAACGCC
GCTATTGCTCGATTTTTAGTGGCGTTTGGACCTG
Found at i:64014077 original size:21 final size:20
Alignment explanation
Indices: 64014053--64014101 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
64014043 CTTTTTTAAC
64014053 CAATAATTTTAAA-TTAAATT
1 CAATAATTTTAAAGTT-AATT
*
64014073 ACAATTATTTTTAAAGTTAATT
1 -CAA-TAATTTTAAAGTTAATT
64014095 CAATAAT
1 CAATAAT
64014102 ATGATGATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
20 3 0.12
21 6 0.25
22 13 0.54
23 2 0.08
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (20 bp):
CAATAATTTTAAAGTTAATT
Found at i:64014713 original size:20 final size:22
Alignment explanation
Indices: 64014676--64014715 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
64014666 TAGTATGATA
*
64014676 AAAAAAGAATTTATAAGCAAGT
1 AAAAAAGAATTTAAAAGCAAGT
64014698 AAAAAA-AA-TTAAAAGCAA
1 AAAAAAGAATTTAAAAGCAA
64014716 ATCATCATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.68, C:0.05, G:0.10, T:0.17
Consensus pattern (22 bp):
AAAAAAGAATTTAAAAGCAAGT
Found at i:64029406 original size:22 final size:22
Alignment explanation
Indices: 64029378--64029499 Score: 70
Period size: 22 Copynumber: 5.3 Consensus size: 22
64029368 TTCCACATCC
64029378 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
64029400 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
64029424 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
64029447 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
64029471 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
64029494 ATCACA
1 ATCACA
64029500 CATACACATG
Statistics
Matches: 72, Mismatches: 16, Indels: 24
0.64 0.14 0.21
Matches are distributed among these distances:
22 27 0.38
23 12 0.17
24 12 0.17
25 21 0.29
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:64029413 original size:47 final size:47
Alignment explanation
Indices: 64029371--64030271 Score: 1538
Period size: 47 Copynumber: 19.1 Consensus size: 47
64029361 TATACACTTC
* * *
64029371 CACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA-TGTT
* **
64029418 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
64029465 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
64029512 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
64029559 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
64029606 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
64029653 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
64029700 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
64029747 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
64029794 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
64029841 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
64029888 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
64029935 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
* * **
64029982 CACATTCATCACATTGGCCATTCGGCCTTATCTCAGATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
* *
64030029 CATATTCATCACATTGGCCATTCGACCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
* * **
64030076 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
64030123 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
* *
64030170 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCAC--ACATACACA-TGTT
* * * *
64030219 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA-TGTT
64030266 CACATT
1 CACATT
64030272 TATTCAAATA
Statistics
Matches: 821, Mismatches: 29, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
46 1 0.00
47 778 0.95
49 41 0.05
50 1 0.00
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.31
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
Found at i:64039502 original size:24 final size:25
Alignment explanation
Indices: 64039461--64039509 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
64039451 GTAAAAGAAG
64039461 TCCAAATTCAACAGAAAAAATCAGT
1 TCCAAATTCAACAGAAAAAATCAGT
64039486 TCCAAATTCAACA-AAAAAATCAGT
1 TCCAAATTCAACAGAAAAAATCAGT
64039510 AGAAAAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.53, C:0.20, G:0.06, T:0.20
Consensus pattern (25 bp):
TCCAAATTCAACAGAAAAAATCAGT
Found at i:64039517 original size:25 final size:25
Alignment explanation
Indices: 64039464--64039517 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
64039454 AAAGAAGTCC
***
64039464 AAATTCAACAGAAAAAATCAGTTCC
1 AAATTCAACAGAAAAAATCAGTGAA
64039489 AAATTCAACA-AAAAAATCAGTAGAA
1 AAATTCAACAGAAAAAATCAGT-GAA
64039514 AAAT
1 AAAT
64039518 ATGAAATTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 11 0.44
25 14 0.56
ACGTcount: A:0.59, C:0.15, G:0.07, T:0.19
Consensus pattern (25 bp):
AAATTCAACAGAAAAAATCAGTGAA
Found at i:64055252 original size:26 final size:27
Alignment explanation
Indices: 64055201--64055253 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
64055191 ACACTCGATC
* *
64055201 CACAGCACACTGGCAATATCCGAGCCA
1 CACAGCACACGGGCAATATCCAAGCCA
*
64055228 CACA-CACACGGGCAATATTCAAGCCA
1 CACAGCACACGGGCAATATCCAAGCCA
64055254 ACATGGGCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.36, C:0.36, G:0.17, T:0.11
Consensus pattern (27 bp):
CACAGCACACGGGCAATATCCAAGCCA
Found at i:64057347 original size:9 final size:9
Alignment explanation
Indices: 64057333--64057390 Score: 59
Period size: 9 Copynumber: 6.3 Consensus size: 9
64057323 GACTTTTGAG
64057333 TTTATTTAT
1 TTTATTTAT
64057342 TTTA-TTAT
1 TTTATTTAT
64057350 TTT-TATTAT
1 TTTAT-TTAT
64057359 TTT-TTTAAT
1 TTTATTT-AT
64057368 TTTAATTTTAT
1 TTT-A-TTTAT
64057379 TTTATTTAT
1 TTTATTTAT
64057388 TTT
1 TTT
64057391 TGAAGACTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
8 9 0.21
9 25 0.58
10 1 0.02
11 5 0.12
12 3 0.07
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTATTTAT
Found at i:64057360 original size:17 final size:17
Alignment explanation
Indices: 64057333--64057388 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
64057323 GACTTTTGAG
64057333 TTTATTTATTTTATTATT
1 TTTA-TTATTTTATTATT
* *
64057351 TTTATTATTTTTTTAAT
1 TTTATTATTTTATTATT
64057368 TTTA--ATTTTATT-TT
1 TTTATTATTTTATTATT
64057382 ATTTATT
1 -TTTATT
64057389 TTTGAAGACT
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
14 1 0.03
15 11 0.35
17 15 0.48
18 4 0.13
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTATTATTTTATTATT
Found at i:64083544 original size:16 final size:16
Alignment explanation
Indices: 64083523--64083562 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
64083513 TCTTAGAAGA
64083523 ATAAAGAATACAAAAC
1 ATAAAGAATACAAAAC
64083539 ATAAAGAATACAAAAC
1 ATAAAGAATACAAAAC
*
64083555 ACAAAGAA
1 ATAAAGAA
64083563 AACCCTAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.70, C:0.12, G:0.07, T:0.10
Consensus pattern (16 bp):
ATAAAGAATACAAAAC
Found at i:64084634 original size:27 final size:27
Alignment explanation
Indices: 64084604--64084655 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
64084594 TTAACATCCT
*
64084604 GACCATTTGGATTATTATCGAGACCAA
1 GACCATTTGGATTATCATCGAGACCAA
*
64084631 GACCATTTGGATTATCATTGAGACC
1 GACCATTTGGATTATCATCGAGACC
64084656 GAGATCGTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (27 bp):
GACCATTTGGATTATCATCGAGACCAA
Found at i:64084755 original size:44 final size:44
Alignment explanation
Indices: 64084705--64084795 Score: 112
Period size: 44 Copynumber: 2.1 Consensus size: 44
64084695 TGCCTTCTTC
64084705 GCAAAGTTCTATCGATATCAA-AGTCAAAAGGATACTCTTTGTTA
1 GCAAAGTTCTATCGATATCAAGA-TCAAAAGGATACTCTTTGTTA
* * * ** *
64084749 GCAAAGTTCTTTTGATCTCTGGATCAAAAGGATATTCTTTGTTA
1 GCAAAGTTCTATCGATATCAAGATCAAAAGGATACTCTTTGTTA
64084793 GCA
1 GCA
64084796 GGAATGTCTC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
44 39 0.98
45 1 0.03
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (44 bp):
GCAAAGTTCTATCGATATCAAGATCAAAAGGATACTCTTTGTTA
Found at i:64085905 original size:76 final size:77
Alignment explanation
Indices: 64085781--64085941 Score: 243
Period size: 76 Copynumber: 2.1 Consensus size: 77
64085771 GATTTTGTAT
* * *
64085781 CATAATTTTGCATTAATTAAAAGATTTTTTATTAATTAATTTTTATTGTAATTATTCATGCAATT
1 CATAATTTTGCATTAATTAAAAGAATATTTATTAATTAATTTTTATTGTAATTACTCATGCAATT
64085846 TAATTGATGAAC
66 TAATTGATGAAC
* *
64085858 CATACTTTTGTATTAATTAAAA-AATATTTATTAATTAATTTTTATTGTAATTACTCATGCAATT
1 CATAATTTTGCATTAATTAAAAGAATATTTATTAATTAATTTTTATTGTAATTACTCATGCAATT
* *
64085922 TACTTGATGCAC
66 TAATTGATGAAC
*
64085934 CACAATTT
1 CATAATTT
64085942 AATTAAAAGA
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
76 55 0.73
77 20 0.27
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.48
Consensus pattern (77 bp):
CATAATTTTGCATTAATTAAAAGAATATTTATTAATTAATTTTTATTGTAATTACTCATGCAATT
TAATTGATGAAC
Found at i:64090243 original size:20 final size:20
Alignment explanation
Indices: 64090220--64090257 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
64090210 TTAAATTCTA
64090220 AAAGATAAATAAAAATAATT
1 AAAGATAAATAAAAATAATT
* *
64090240 AAAGATAATTAAAGATAA
1 AAAGATAAATAAAAATAA
64090258 ATGCTAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (20 bp):
AAAGATAAATAAAAATAATT
Found at i:64091495 original size:14 final size:14
Alignment explanation
Indices: 64091476--64091524 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
64091466 AGTGGAGATG
64091476 AAATCAAACAGACA
1 AAATCAAACAGACA
**
64091490 AAATCATAACTAGATG
1 AAATCA-AAC-AGACA
64091506 AAATCAAACAGACA
1 AAATCAAACAGACA
64091520 AAATC
1 AAATC
64091525 GTAACTAACT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 14 0.48
15 6 0.21
16 9 0.31
ACGTcount: A:0.59, C:0.18, G:0.08, T:0.14
Consensus pattern (14 bp):
AAATCAAACAGACA
Found at i:64091505 original size:30 final size:30
Alignment explanation
Indices: 64091471--64091531 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
64091461 AAAACAGTGG
64091471 AGATGAAATCAAACAGACAAAATCATAACT
1 AGATGAAATCAAACAGACAAAATCATAACT
*
64091501 AGATGAAATCAAACAGACAAAATCGTAACT
1 AGATGAAATCAAACAGACAAAATCATAACT
64091531 A
1 A
64091532 ACTCAGTAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.16, G:0.11, T:0.16
Consensus pattern (30 bp):
AGATGAAATCAAACAGACAAAATCATAACT
Found at i:64091511 original size:16 final size:14
Alignment explanation
Indices: 64091471--64091517 Score: 58
Period size: 14 Copynumber: 3.2 Consensus size: 14
64091461 AAAACAGTGG
64091471 AGATGAAATCAAAC
1 AGATGAAATCAAAC
**
64091485 AGACAAAATCATAAC
1 AGATGAAATCA-AAC
64091500 TAGATGAAATCAAAC
1 -AGATGAAATCAAAC
64091515 AGA
1 AGA
64091518 CAAAATCGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 12 0.44
15 6 0.22
16 9 0.33
ACGTcount: A:0.57, C:0.15, G:0.13, T:0.15
Consensus pattern (14 bp):
AGATGAAATCAAAC
Found at i:64093489 original size:40 final size:40
Alignment explanation
Indices: 64093395--64093619 Score: 242
Period size: 40 Copynumber: 5.6 Consensus size: 40
64093385 TATTCGAATG
*
64093395 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
64093436 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
64093476 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
64093516 ATATCCGGGCTAA-AACCTGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCC-GAAGGCATTTGTGCTAGTGACT
* *
64093556 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * *
64093596 ACATCCGGGCTAAGACCCAAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
64093620 CTTGTGCAAG
Statistics
Matches: 156, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
39 4 0.03
40 120 0.77
41 31 0.20
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:64093575 original size:80 final size:80
Alignment explanation
Indices: 64093395--64093655 Score: 287
Period size: 80 Copynumber: 3.3 Consensus size: 80
64093385 TATTCGAATG
* * * *
64093395 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGAACCGAAGGC
*
64093460 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * *
64093476 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAA-AACCTGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAACC-GAAGGC
* *
64093540 ATTTGTGCTAG-CGACT
65 ATTCGTGCGAGTCG-CT
* * * * * *
64093556 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCAAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAACCGAAGGCA
* * *
64093621 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
64093635 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
64093656 ATTACTTGAG
Statistics
Matches: 153, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
78 14 0.09
79 17 0.11
80 87 0.57
81 35 0.23
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGAACCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:64093609 original size:120 final size:121
Alignment explanation
Indices: 64093395--64093655 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 121
64093385 TATTCGAATG
** * *
64093395 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * *
64093460 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
* * *
64093516 ATATCCGGGCTAAAACCTGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * * * *
64093579 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCAAAGGC-CTTGTGCAAG-TAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGA-TT
*
64093635 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAAACCCGAAG
64093656 ATTACTTGAG
Statistics
Matches: 119, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
118 14 0.12
119 19 0.16
120 56 0.47
121 30 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
Found at i:64101634 original size:40 final size:40
Alignment explanation
Indices: 64101540--64101764 Score: 224
Period size: 40 Copynumber: 5.6 Consensus size: 40
64101530 TATTCGAATG
* *
64101540 ATATCCGGGCTAAG-TCTCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATC-CGAAGGCATTTGTGCTA-GCGACT
* * * * *
64101581 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-CGACT
* *
64101621 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* *
64101661 ATATCCGGGCTAA-AACCTAAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCC-GAAGGCATTTGTGCTAGCGACT
* * *
64101701 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
* * *
64101741 ACATCCAGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
64101765 CTTGTGCAAG
Statistics
Matches: 154, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
39 4 0.03
40 118 0.77
41 30 0.19
42 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
Found at i:64101752 original size:80 final size:79
Alignment explanation
Indices: 64101540--64101800 Score: 242
Period size: 80 Copynumber: 3.3 Consensus size: 79
64101530 TATTCGAATG
* * * * *
64101540 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGG-CTAAGAACCAAAGGC
*
64101605 ATTCGTGCGAGTTGCT
64 ATTCGTGCGAGTCGCT
* * *
64101621 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAA-AACCTAAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC-GGCTAAGAACC-AAAGGC
* *
64101685 ATTTGTGCTAG-CGACT
64 ATTCGTGCGAGTCG-CT
* * * * * *
64101701 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCAGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC-GGCTAAGAACCAAAGGCA
* * *
64101766 TT-GTGCAAGTAGTT
65 TTCGTGCGAGTCGCT
* *
64101780 ATATCC-GACTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
64101801 ATTACTTGAG
Statistics
Matches: 149, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
78 13 0.09
79 17 0.11
80 83 0.56
81 36 0.24
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGCTAAGAACCAAAGGCAT
TCGTGCGAGTCGCT
Found at i:64103518 original size:21 final size:21
Alignment explanation
Indices: 64103494--64103551 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
64103484 ACATCCAAAC
*
64103494 AAAATAAAGTAATAATAAAATA
1 AAAATAAAG-AAAAATAAAATA
*
64103516 AAAATTAAGAAAAATAAAATA
1 AAAATAAAGAAAAATAAAATA
*
64103537 AATAA-AAATAAAAAT
1 AA-AATAAAGAAAAAT
64103552 TGGGTTGCCT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 21 0.68
22 10 0.32
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (21 bp):
AAAATAAAGAAAAATAAAATA
Found at i:64103534 original size:15 final size:15
Alignment explanation
Indices: 64103510--64103549 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
64103500 AAGTAATAAT
*
64103510 AAAATAAAAATTAAGA
1 AAAAT-AAAATAAAGA
*
64103526 AAAATAAAATAAATA
1 AAAATAAAATAAAGA
64103541 AAAATAAAA
1 AAAATAAAA
64103550 ATTGGGTTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (15 bp):
AAAATAAAATAAAGA
Found at i:64105300 original size:28 final size:28
Alignment explanation
Indices: 64105268--64105393 Score: 171
Period size: 29 Copynumber: 4.4 Consensus size: 28
64105258 AGTAAGTCCA
*
64105268 CACACTTAGTGTTATATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
*
64105296 CACACTTAGTGCTTACATAATCAAACTCG
1 CACACTTAGTGC-TATATAATCAAACTCG
*
64105325 CACACTTAGTGCTATATAATCAAACTTG
1 CACACTTAGTGCTATATAATCAAACTCG
** * *
64105353 CACACTTAGTGCTATGCAATTTAAACCCG
1 CACACTTAGTGCTATATAA-TCAAACTCG
64105382 CACACTTAGTGC
1 CACACTTAGTGC
64105394 CAATCTCATG
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 42 0.48
29 45 0.52
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (28 bp):
CACACTTAGTGCTATATAATCAAACTCG
Found at i:64105341 original size:57 final size:57
Alignment explanation
Indices: 64105268--64105393 Score: 182
Period size: 57 Copynumber: 2.2 Consensus size: 57
64105258 AGTAAGTCCA
* *
64105268 CACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAACCCG
* * * *
64105325 CACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAACCCG
1 CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAACCCG
64105382 CACACTTAGTGC
1 CACACTTAGTGC
64105394 CAATCTCATG
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
57 59 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (57 bp):
CACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAACCCG
Found at i:64111249 original size:46 final size:46
Alignment explanation
Indices: 64111123--64111295 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
64111113 TATTTGAGTT
* *
64111123 CCGAGCTCGTTGAGTTGAGTCCGAGTTCG-TGA--GATG-TAACTAGGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAAC-A--C
* * * *
64111168 ATCCGAACTCATTGAGTTGAGTTCC-AGTTCACTTATGGATGCGAACGC
1 --CCGAGCTCGTTGAGTTGAG-TCCGAGTTCGCTTATGGATGCGAACAC
*
64111216 CCGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGGATGCGAACAC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACAC
64111262 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTAT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTAT
64111296 AGGTGGGTTA
Statistics
Matches: 108, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
45 3 0.03
46 70 0.65
47 22 0.20
48 6 0.06
50 4 0.04
51 3 0.03
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACAC
Found at i:64125812 original size:10 final size:10
Alignment explanation
Indices: 64125799--64125832 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
64125789 ATAAATACAA
64125799 ATAATTAAAG
1 ATAATTAAAG
64125809 ATAATTAAAG
1 ATAATTAAAG
*
64125819 ATAAATAAAG
1 ATAATTAAAG
64125829 ATAA
1 ATAA
64125833 ATGCTAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (10 bp):
ATAATTAAAG
Found at i:64125833 original size:10 final size:10
Alignment explanation
Indices: 64125789--64125834 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
64125779 ATTCTAAAAT
64125789 ATAAATACAA-
1 ATAAATA-AAG
*
64125799 ATAATTAAAG
1 ATAAATAAAG
*
64125809 ATAATTAAAG
1 ATAAATAAAG
64125819 ATAAATAAAG
1 ATAAATAAAG
64125829 ATAAAT
1 ATAAAT
64125835 GCTAATATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
9 2 0.06
10 31 0.94
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (10 bp):
ATAAATAAAG
Found at i:64126402 original size:100 final size:100
Alignment explanation
Indices: 64126189--64129147 Score: 877
Period size: 100 Copynumber: 30.6 Consensus size: 100
64126179 TGTAAGTGCT
* * * * *
64126189 AAATTGGGACGAAATCGATTATCATGCCAAACTAACCAGCCAAACTGCCCTGCCAAAATTTGGTT
1 AAATT-GGACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATT
*
64126254 GAATGCAAATATAAGAGGACAATTT-TATAAGCATTC
65 GAATGCAAAAATAAGAGGAC-ATTTATATAAGCATTC
* * * * * *
64126290 AAATTGGAACAAAATGGACTATCAAGCCAAACTACCCAGCTAAACTACTCTGACAAAA-TTGATT
1 AAATTGG-ACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATT
* * *
64126354 GAAAGCAAAAATAAGATGACATTTATATAAGGATTC
65 GAATGCAAAAATAAGAGGACATTTATATAAGCATTC
* * * *
64126390 AAATTGCGACAAAATAAACTGTCATGCCAAACTACACAACCAAACTGCCCTGCCAAAATTTGATT
1 AAATTG-GACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATT
*
64126455 GAATGCAAAATTAAGAGGACA-TTACTATAAGCATTC
65 GAATGCAAAAATAAGAGGACATTTA-TATAAGCATTC
* ** * * * * * * ** *
64126491 AATTTGGGATGAAGTAGATTGTCATGTCAAACTACTCTGCCAAACCACCCTG-CAAATATTTGCT
1 AAATT-GGACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAA-ATTTGAT
* * * * * *
64126555 TAAATGCAAAATTAAGAGAACATTTCTATTAGCATTT
64 TGAATGCAAAAATAAGAGGACATTTATATAAGCATTC
* * * *
64126592 AAATTGGGACGAAATGGATTGTCATGCC--A--A---A--C-AACT--CC-GCCAAAATTTGATT
1 AAATT-GGACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATT
* *
64126644 GAATG-AAAAATTAAGAGGACATTTCTGTAAGCATTC
65 GAATGCAAAAA-TAAGAGGACATTTATATAAGCATTC
* * * * * **
64126680 AAATTGGGACGAAATGGACTGTAATGCCAAACTACCCAGCCAAACTGCCCTACCAAAATGAGATT
1 AAATT-GGACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATT
* ** * *
64126745 GAATGCAAAATTAAGAATACATTTCTTTAAGCATTC
65 GAATGCAAAAATAAGAGGACATTTATATAAGCATTC
* * * * * * *
64126781 AAATTGGA-AGGAAAT-TA--AT--TG-----TTA---GGCTAAACTACCTTGCTAAAA-TTGAT
1 AAATTGGACA--AAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGAT
* * *
64126831 TGAATGCAAAATTAAGAGGAAATTTCTATAAGCATTC
64 TGAATGCAAAAATAAGAGGACATTTATATAAGCATTC
** * * * * * *
64126868 AAATTGAGATGAAATGGATTGTCATGCCAAACTACCTAGCCAAATTGCCCTACCAAAATTTGATT
1 AAATTG-GACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATT
***
64126933 GAATGC-ACTTTAAGAGGACATTTATATAAGCATTC
65 GAATGCAAAAATAAGAGGACATTTATATAAGCATTC
* * * * * *
64126968 AAATTAGGACGAAATGGACTGTCATTCCAAACTACCCTAG-CAAATTGCCCTACCAAAA-TTGAT
1 AAATT-GGACAAAATAGACTATCATGCCAAACTACCC-AGCCAAACTGCCCTGCCAAAATTTGAT
* * * *
64127031 TAAATGCAAAAATAAAAGGATATTTCTATAAGCATTC
64 TGAATGCAAAAATAAGAGGACATTTATATAAGCATTC
* * ** * * * * * *
64127068 AAATTGGGAAAAAAATGGGTTGTCATGCCAAACTACACAACCAAACGGCCCTACCAAAATTTTAT
1 AAATT-GG-ACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGAT
*
64127133 TGAATG-AAAAATCAAGAGGACATTTCTATAAGCATTTC
64 TGAATGCAAAAAT-AAGAGGACATTTATATAAGCA-TTC
* * * * ** *** * ** *
64127171 AATTTGGGACGAAATGGACTGTCATATCAAACTACCTTCCCAAACTGCCCT-ACAGTATTTGCTT
1 AAATT-GGACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATT
* * * * * *
64127235 GAATCCATAATTAAGAGGACATTTCTATTAGCATTT
65 GAATGCAAAAATAAGAGGACATTTATATAAGCATTC
* * *
64127271 AAATTGGA-ATGAAATCGACTGTTATGCCAAACT----------ACT---CTGCCAAAATTTGAT
1 AAATTGGACA--AAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGAT
* * * * *
64127322 TTAATACACAATTAAGAGGACATTTATATAGGCATTC
64 TGAATGCAAAAATAAGAGGACATTTATATAAGCATTC
* * * * * * * *
64127359 AAATTGGGACAAAATAAACTGTCATACCGAACTACCCAGCCAAACTACCATGCTAAAA-ATGATT
1 AAATT-GGACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATT
* *
64127423 GAATGCAAAATTAAGAGAACATTTCA-ATAAGCATTC
65 GAATGCAAAAATAAGAGGACATTT-ATATAAGCATTC
* * * * * ** * * *
64127459 AAATTAGGACCAAAT-GAACTATCATGCAAAACTACTCATCCATACTTTCTTG-AAAAAATTGAT
1 AAATT-GGACAAAATAG-ACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGAT
* * * * *
64127522 TGAACGCAAAATTCAGAAGACATTTCTATAAGCATTC
64 TGAATGCAAAAATAAGAGGACATTTATATAAGCATTC
* * * **
64127559 AAATTGGGAC--GA-A-ACTACCAAT-CTAAACT-----GCC---CTG-CC--AA--AATTTGAT
1 AAATT-GGACAAAATAGACTATC-ATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGAT
* * * *
64127606 TGAATG-AAAAATTAAAAGGGCATTTCTATAA-AAGTTC
64 TGAATGCAAAAA-TAAGAGGACATTTATATAAGCA-TTC
* * *
64127643 AAATTGAGACTAAATGGACTGTCATGCCAAACT-----G-C--A-----CTGCCAAAATTTGATT
1 AAATTG-GACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATT
* * *
64127695 GAATGCAAAATTAAGAGGACATTTCTATAAACATTC
65 GAATGCAAAAATAAGAGGACATTTATATAAGCATTC
** * * * * ** *
64127731 AAATTAGGATGAAATGGACTGTCATGCCAAACTACCCTA-CAAAAATTG-ATTGAATGCAAAA-T
1 AAATT-GGACAAAATAGACTATCATGCCAAACTACCC-AGC-CAAACTGCCCTG---CCAAAATT
* * * ** * * * * *
64127793 T-A-AG-A-GGACATTTCAATAGG-CATTCAAATTGAG-A-TG
60 TGATTGAATGCAAAAAT-AAGAGGACATTTATA-TAAGCATTC
* *** * * * * * * * * *
64127829 AAA-TAGACTGTCAT-GCCAAAC-TACC--A--AGCCA--AA--CTGCCCTGACAAATTTTTATT
1 AAATTGGAC-AAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATT
* * * * *
64127883 AAAAGCAAAATTAAGAGAACATTTTTATAAG-AGTTC
65 GAATGCAAAAATAAGAGGACATTTATATAAGCA-TTC
* * * * *
64127919 AAATTGGGACGAAATAGACTATTATGCCAAACTACTCC-GCCAAATTACTCTAG--AAGAATTTG
1 AAATT-GGACAAAATAGACTATCATGCCAAACTAC-CCAGCCAAACTGCCCT-GCCAA-AATTTG
* *
64127981 ATTGAATGCAAAAATAAGAGGAAATTTTTATAA--A--C
62 ATTGAATGCAAAAATAAGAGGACATTTATATAAGCATTC
** * * * * ** **
64128016 --ATTGGGATGAAATGGACTCTCATGTCAAACTACCTAATCAAACTATCCTGCCAAAA-TTGATT
1 AAATT-GGACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATT
* * * *
64128078 GAATGCAAAATTTAGAAGACATTTTTATAAGCATTC
65 GAATGCAAAAATAAGAGGACATTTATATAAGCATTC
* * * * * * ** * *
64128114 AAATTAGGACGAAATAAAC-AGTTATCCCAAACTACCCAACCAAACTACTTTGCCAAGATTTTAT
1 AAATT-GGACAAAATAGACTA-TCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGAT
* * * *
64128178 TAAATGCAAAATTAAGAGGGCATTTCTATAAG-AGTTC
64 TGAATGCAAAAATAAGAGGACATTTATATAAGCA-TTC
*** * * * * * * *
64128215 AAATTGAGGTGAATTGGGCTGTCATGCCAAACTACCCAGCCAAACTACCCTTCCAAAATTTTATT
1 AAATTG-GACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATT
* * **
64128280 GAATGCAAAATTAAGATGACATTTCCATAAGCATTC
65 GAATGCAAAAATAAGAGGACATTTATATAAGCATTC
* * * * * * * ***
64128316 AAATTGGGACGAAATAGACTGTCATGGCAAACTTCTCAACCAAATTTGGTTAAATG-CAAAA-TT
1 AAATT-GGACAAAATAGACTATCATGCCAAACTACCCAGCCAAA-CT-G--CCCTGCCAAAATTT
* * **** * * ** *
64128379 -A--AAAGGACATTTCTATA-A-G-CATTCAAATTTGGA--C
61 GATTGAATG-CAAAAATA-AGAGGACATTTATATAAGCATTC
*** * * * *
64128413 GAAA-TGGACGGTCATGCCAAACTACCTA-GCCAAACT-----G-C---CT----TTCTAAAA-T
1 -AAATTGGAC-AAAAT---AGACTATC-ATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATT
* * *
64128462 TGATTGAATGCAAAATTAATAGGACATTTCTATAAGCATTC
60 TGATTGAATGCAAAAATAAGAGGACATTTATATAAGCATTC
* * * * * *
64128503 AAATCGGGACGAAAT-GAACTGTCATGCAAAACTACCCAGCCAAATTGCCTTGCC-AAATTTGAT
1 AAAT-TGGACAAAATAG-ACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGAT
* * * * * *
64128566 TGAACGTAAAATTTAGAGGAAATTTCTATAAGCATTC
64 TGAATGCAAAAATAAGAGGACATTTATATAAGCATTC
* **
64128603 AAATTAGGACGAAATAGACTGCCATGCCAAACT----A-CC-AA--G---T--CAAAATTTGATT
1 AAATT-GGACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATT
* * * *
64128655 GAATGTAAAACTAAGAGAACATTTCTATAAG-AGTTC
65 GAATGCAAAAATAAGAGGACATTTATATAAGCA-TTC
* * * * * *
64128691 AAATTGGGACAAAATGGAC-AGTTATGCCAAAATTCCCAGCCAAATTTCCCTGCCAAAATTTGAT
1 AAATT-GGACAAAATAGACTA-TCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGAT
* * * *
64128755 TGAATGCAAAATTAAGA-AAAATTT-TCGATAAACATTC
64 TGAATGCAAAAATAAGAGGACATTTAT--ATAAGCATTC
* * * * *
64128792 AAATTGGGA-AGAAAT-GAACTGTCATTCCAAACTACCTAGCCAAACTTCCCTG-CAAAAATTGA
1 AAATT-GGACA-AAATAG-ACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGA
* * * * *
64128854 TCGAATGCGAAATTAAGAAGACATTTCTATAAGCATTC
63 TTGAATGCAAAAATAAGAGGACATTTATATAAGCATTC
* * * * * * * *
64128892 GAATTGGTACAAAATGGACTGTCATTCCAAACTA-CCAACAAAATTTCCCTGCCAAAATTTGATT
1 AAATTGG-ACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATT
* * *
64128956 GAATGCAAAATTAAGAGGACACTTCA-ATAAACATTC
65 GAATGCAAAAATAAGAGGACA-TTTATATAAGCATTC
* * * * *
64128992 AAATTGGGA-AGAAATTGACTGTCATGCCAAACTACCCAGCCAAACTTCCCT-ACAAAAATTGAT
1 AAATT-GGACA-AAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGAT
* * *
64129055 TGAATGCAAAATTAAGAGGACATTTCTATAAACATTC
64 TGAATGCAAAAATAAGAGGACATTTATATAAGCATTC
* * * * *
64129092 AAATTGGTACGAAATGGACTCTCATGCCAAACTACCCAGCCAAATTGTCCTGCCAA
1 AAATTGG-ACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAA
64129148 TGTCATAACG
Statistics
Matches: 2164, Mismatches: 465, Indels: 458
0.70 0.15 0.15
Matches are distributed among these distances:
83 7 0.00
84 49 0.02
85 4 0.00
86 11 0.01
87 75 0.03
88 296 0.14
89 29 0.01
90 16 0.01
91 18 0.01
92 13 0.01
93 7 0.00
94 39 0.02
95 45 0.02
96 27 0.01
97 18 0.01
98 19 0.01
99 68 0.03
100 703 0.32
101 615 0.28
102 80 0.04
103 14 0.01
104 10 0.00
105 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (100 bp):
AAATTGGACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTG
AATGCAAAAATAAGAGGACATTTATATAAGCATTC
Found at i:64126514 original size:101 final size:100
Alignment explanation
Indices: 64126189--64128348 Score: 1520
Period size: 101 Copynumber: 22.3 Consensus size: 100
64126179 TGTAAGTGCT
* * * *
64126189 AAATTGGGACGAAATCGATTATCATGCCAAACTAACCAGCCAAACTGCCCTGCCAAAATTTGGTT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACT-ACCAGCCAAACTGCCCTGCCAAAATTTGATT
64126254 GAATGC-AAATATAAGAGGACAATTT-TATAAGCATTC
65 GAATGCAAAAT-TAAGAGGAC-ATTTCTATAAGCATTC
* * * * * * * *
64126290 AAATTGGAACAAAATGGACTATCAAGCCAAACTACCCAGCTAAACTACTCTGACAAAA-TTGATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTA-CCAGCCAAACTGCCCTGCCAAAATTTGATT
* * * * *
64126354 GAAAGCAAAAATAAGATGACATTTATATAAGGATTC
65 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * ** *
64126390 AAATTGCGACAAAATAAACTGTCATGCCAAACTACACAACCAAACTGCCCTGCCAAAATTTGATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTAC-CAGCCAAACTGCCCTGCCAAAATTTGATT
*
64126455 GAATGCAAAATTAAGAGGACATTACTATAAGCATTC
65 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * * * * ** *
64126491 AATTTGGGATGAAGTAGATTGTCATGTCAAACTACTCTGCCAAACCACCCTG-CAAATATTTGCT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTAC-CAGCCAAACTGCCCTGCCAAA-ATTTGAT
* * * *
64126555 TAAATGCAAAATTAAGAGAACATTTCTATTAGCATTT
64 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
*
64126592 AAATTGGGACGAAATGGATTGTCATGCC--A--A--A--C-AACT--CC-GCCAAAATTTGATTG
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCAGCCAAACTGCCCTGCCAAAATTTGATTG
* *
64126645 AATGAAAAATTAAGAGGACATTTCTGTAAGCATTC
66 AATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * **
64126680 AAATTGGGACGAAATGGACTGTAATGCCAAACTACCCAGCCAAACTGCCCTACCAAAATGAGATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTA-CCAGCCAAACTGCCCTGCCAAAATTTGATT
** *
64126745 GAATGCAAAATTAAGAATACATTTCTTTAAGCATTC
65 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * ** * * * * *
64126781 AAATTGGAAGGAAATTAATTGTTAGGCTAAACT---A--C---CT----TGCTAAAA-TTGATTG
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCAGCCAAACTGCCCTGCCAAAATTTGATTG
*
64126833 AATGCAAAATTAAGAGGAAATTTCTATAAGCATTC
66 AATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * *
64126868 AAATTGAGATGAAATGGATTGTCATGCCAAACTACCTAGCCAAATTGCCCTACCAAAATTTGATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACC-AGCCAAACTGCCCTGCCAAAATTTGATT
** *
64126933 GAATGC-ACTTTAAGAGGACATTTATATAAGCATTC
65 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * *
64126968 AAATTAGGACGAAATGGACTGTCATTCCAAACTACCCTAG-CAAATTGCCCTACCAAAA-TTGAT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTA-CC-AGCCAAACTGCCCTGCCAAAATTTGAT
* * * *
64127031 TAAATGCAAAAATAAAAGGATATTTCTATAAGCATTC
64 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
** ** * * * *
64127068 AAATTGGGAAAAAAATGGGTTGTCATGCCAAACTACACAACCAAACGGCCCTACCAAAATTTTAT
1 AAATTGGG-ACGAAATGGACTGTCATGCCAAACTAC-CAGCCAAACTGCCCTGCCAAAATTTGAT
* *
64127133 TGAATGAAAAATCAAGAGGACATTTCTATAAGCATTTC
64 TGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTC
* ** ** * ** *
64127171 AATTTGGGACGAAATGGACTGTCATATCAAACTACCTTCCCAAACTGCCCT-ACAGTATTTGCTT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACC-AGCCAAACTGCCCTGCCAAAATTTGATT
* * * *
64127235 GAATCCATAATTAAGAGGACATTTCTATTAGCATTT
65 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * *
64127271 AAATTGGAATGAAATCGACTGTTATGCCAAACT---------ACT---CTGCCAAAATTTGATTT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCAGCCAAACTGCCCTGCCAAAATTTGATTG
* * * *
64127324 AATACACAATTAAGAGGACATTTATATAGGCATTC
66 AATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* ** * * * * * *
64127359 AAATTGGGACAAAATAAACTGTCATACCGAACTACCCAGCCAAACTACCATGCTAAAA-ATGATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTA-CCAGCCAAACTGCCCTGCCAAAATTTGATT
* *
64127423 GAATGCAAAATTAAGAGAACATTTCAATAAGCATTC
65 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * * * * ** * * *
64127459 AAATTAGGACCAAATGAACTATCATGCAAAACTACTCATCCATACTTTCTTG-AAAAAATTGATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTAC-CAGCCAAACTGCCCTGCCAAAATTTGATT
* * *
64127523 GAACGCAAAATTCAGAAGACATTTCTATAAGCATTC
65 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* **
64127559 AAATTGGGACGAAACT--AC---CAAT-CTAAACT----GCC---CTG-CC--AA--AATTTGAT
1 AAATTGGGACGAAA-TGGACTGTC-ATGCCAAACTACCAGCCAAACTGCCCTGCCAAAATTTGAT
* * * *
64127606 TGAATGAAAAATTAAAAGGGCATTTCTATAA-AAGTTC
64 TGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTC
* *
64127643 AAATTGAGACTAAATGGACTGTCATGCCAAACT----G-C--A-----CTGCCAAAATTTGATTG
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCAGCCAAACTGCCCTGCCAAAATTTGATTG
*
64127696 AATGCAAAATTAAGAGGACATTTCTATAAACATTC
66 AATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * *
64127731 AAATTAGGATGAAATGGACTGTCATGCCAAACT---------A---CCCT-ACAAAAATTGATTG
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCAGCCAAACTGCCCTGCCAAAATTTGATTG
* *
64127783 AATGCAAAATTAAGAGGACATTTCAATAGGCATTC
66 AATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * * *
64127818 AAATTGAGATGAAATAGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGACAAATTTTTATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACC-AGCCAAACTGCCCTGCCAAAATTTGATT
* * * *
64127883 AAAAGCAAAATTAAGAGAACATTTTTATAAG-AGTTC
65 GAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTC
* * * * * * *
64127919 AAATTGGGACGAAATAGACTATTATGCCAAACTACTCCGCCAAATTACTCTAG--AAGAATTTGA
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTAC-CAGCCAAACTGCCCT-GCCAA-AATTTGA
* * *
64127982 TTGAATGCAAAAATAAGAGGAAATTTTTATAA--A--C
63 TTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * ** **
64128016 --ATTGGGATGAAATGGACTCTCATGTCAAACTACCTAATCAAACTATCCTGCCAAAA-TTGATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACC-AGCCAAACTGCCCTGCCAAAATTTGATT
* * *
64128078 GAATGCAAAATTTAGAAGACATTTTTATAAGCATTC
65 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* ** * * * * * ** * *
64128114 AAATTAGGACGAAATAAACAGTTATCCCAAACTACCCAACCAAACTACTTTGCCAAGATTTTATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTA-CCAGCCAAACTGCCCTGCCAAAATTTGATT
* *
64128179 AAATGCAAAATTAAGAGGGCATTTCTATAAG-AGTTC
65 GAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTC
* * * * * *
64128215 AAATTGAGG-TGAATTGGGCTGTCATGCCAAACTACCCAGCCAAACTACCCTTCCAAAATTTTAT
1 AAATTG-GGACGAAATGGACTGTCATGCCAAACTA-CCAGCCAAACTGCCCTGCCAAAATTTGAT
* *
64128279 TGAATGCAAAATTAAGATGACATTTCCATAAGCATTC
64 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* *
64128316 AAATTGGGACGAAATAGACTGTCATGGCAAACT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACT
64128349 TCTCAACCAA
Statistics
Matches: 1625, Mismatches: 325, Indels: 218
0.75 0.15 0.10
Matches are distributed among these distances:
83 2 0.00
84 48 0.03
85 2 0.00
86 2 0.00
87 141 0.09
88 213 0.13
89 7 0.00
90 4 0.00
91 6 0.00
92 4 0.00
93 1 0.00
94 34 0.02
95 40 0.02
96 11 0.01
97 7 0.00
98 8 0.00
99 24 0.01
100 388 0.24
101 604 0.37
102 69 0.04
103 10 0.01
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (100 bp):
AAATTGGGACGAAATGGACTGTCATGCCAAACTACCAGCCAAACTGCCCTGCCAAAATTTGATTG
AATGCAAAATTAAGAGGACATTTCTATAAGCATTC
Found at i:64126884 original size:188 final size:188
Alignment explanation
Indices: 64126429--64129127 Score: 1547
Period size: 188 Copynumber: 14.1 Consensus size: 188
64126419 AACTACACAA
* * * * *
64126429 CCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTACTATAAGCATTCAAT
1 CCAAACTACCTTGCTAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* * * * * * * ** * * *
64126494 TTGGGATGAAGTAGATTGTCATGTCAAACTACTCTGCCAAACCACCCT-GCAAATATTTGCTTAA
65 TTGAGATGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTACCAAA-ATTTGATTGA
* * * *
64126558 ATGCAAAATTAAG-AGAACATTTCTATTAGCATTTAAATTGGGACGAAATGGATTGTCATG
129 ATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTGGGACGAAATGAACTGTCATG
* * * * *
64126618 CCAAAC-AACTCCGCCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTGTAAGCATTCAA
1 CCAAACTACCT-TGCTAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * **
64126682 ATTGGGACGAAATGGACTGTAATGCCAAACTACCCAGCCAAACTGCCCTACCAAAATGAGATTGA
64 ATTGAGATGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTACCAAAATTTGATTGA
* * * * * * * *
64126747 ATGCAAAATTAAGAATACATTTCTTTAAGCATTCAAATTGGAAGGAAATTAATTGTTAGG
129 ATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGAACTGTCATG
* *
64126807 CTAAACTACCTTGCTAAAATTGATTGAATGCAAAATTAAGAGGAAATTTCTATAAGCATTCAAAT
1 CCAAACTACCTTGCTAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAAT
* * *
64126872 TGAGATGAAATGGATTGTCATGCCAAACTACCTAGCCAAATTGCCCTACCAAAATTTGATTGAAT
66 TGAGATGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTACCAAAATTTGATTGAAT
** * * * * *
64126937 GC-ACTTTAAGAGGACATTTATATAAGCATTCAAATTAGGACGAAATGGACTGTCATT
131 GCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGAACTGTCATG
* * * *
64126994 CCAAACTACCCTAGCAAATTGCCCTACCAAAATTGATTAAATGCAAAAATAAAAGGATATTTCTA
1 CCAAACTA--C---C---TTG--CT---AAAATTGATTGAATGCAAAATTAAGAGGACATTTCTA
* ** ** * * *
64127059 TAAGCATTCAAATTGGGAAAAAAATGGGTTGTCATGCCAAACTACACAACCAAACGGCCCTACCA
53 TAAGCATTCAAATTGAG-ATGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTACCA
* * * * * *
64127124 AAATTTTATTGAATGAAAAATCAAGAGGACATTTCTATAAGCATTTCAATTTGGGACGAAATGGA
117 AAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCA-TTCAAATTGGGACGAAATGAA
*
64127189 CTGTCATA
181 CTGTCATG
* * * * *
64127197 TCAAACTACCTTCCCAAACTGCCCTACAGTATTTGCTTGAATCCATAATTAAGAGGACATTTCTA
1 CCAAACTACC-T-------TG--CTA-A--AATTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * *
64127262 TTAGCATTTAAATTG-GAATGAAATCGACTGTTATGCCAAACT----------ACT---CTGCCA
53 TAAGCATTCAAATTGAG-ATGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTACCA
* * * * * * * *
64127313 AAATTTGATTTAATACACAATTAAGAGGACATTTATATAGGCATTCAAATTGGGACAAAATAAAC
117 AAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGAAC
64127378 TGTCATACCGAACTACCCAG
182 TG---T--C--A-T-----G
* * * *
64127398 CCAAACTACCATGCTAAAAATGATTGAATGCAAAATTAAGAGAACATTTCAATAAGCATTCAAAT
1 CCAAACTACCTTGCTAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAAT
** * * * * * * ** * *
64127463 T-AGGACCAAATGAACTATCATGCAAAACTACTCATCCATACTTTCTTGA--AAAAATTGATTGA
66 TGA-GATGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCT-ACCAAAATTTGATTGA
* *
64127525 ACGCAAAATTCAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAACT--AC---CAAT-
129 ATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAA-TGAACTGTC-ATG
* * * * * * * *
64127581 CTAAACTGCCCTGCCAAAATTTGATTGAATGAAAAATTAAAAGGGCATTTCTATAA-AAGTTCAA
1 CCAAACTACCTTGCTAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAA
64127645 ATTGAGACT-AAATGGACTGTCATGCCAAACT-----G-C--ACTG-----CCAAAATTTGATTG
64 ATTGAGA-TGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTACCAAAATTTGATTG
* * * * *
64127696 AATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTAGGATGAAATGGACTGTCATG
128 AATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGAACTGTCATG
* * * * *
64127757 CCAAACTACCCTACAAAAATTGATTGAATGCAAAATTAAGAGGACATTTCAATAGGCATTCAAAT
1 CCAAACTACCTTGCTAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAAT
* * * * *
64127822 TGAGATGAAATAGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGA-CAAATTTTTATTAAA
66 TGAGATGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCT-ACCAAAATTTGATTGAA
* * * *
64127886 AGCAAAATTAAG-AGAACATTTTTATAAG-AGTTCAAATTGGGACGAAAT-AGACTATTATG
130 TGCAAAATTAAGAAG-ACATTTCTATAAGCA-TTCAAATTGGGACGAAATGA-ACTGTCATG
* * * *
64127945 CCAAACTACTCCGCCAAATTACTCTAGAAGAATTTGATTGAATGCAAAAATAAGAGGAAATTTTT
1 CCAAACTA-----CC---TT--GCT--AA-AA-TTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * ** ** *
64128010 ATAA--A--C--ATTGGGATGAAATGGACTCTCATGTCAAACTACCTAATCAAACTATCCTGCCA
52 ATAAGCATTCAAATTGAGATGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTACCA
* * * *
64128069 AAA-TTGATTGAATGCAAAATTTAGAAGACATTTTTATAAGCATTCAAATTAGGACGAAATAAAC
117 AAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGAAC
* *
64128133 AGTTATCCCAAACTACCCAA
182 ---TGT--C--A-T-----G
* * * * * *
64128153 CCAAACTACTTTGCCAAGATTTTATTAAATGCAAAATTAAGAGGGCATTTCTATAAG-AGTTCAA
1 CCAAACTACCTTGCTAA-AATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAA
* * * * * *
64128217 ATTGAGGTGAATTGGGCTGTCATGCCAAACTACCCAGCCAAACTACCCTTCCAAAATTTTATTGA
64 ATTGAGATGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTACCAAAATTTGATTGA
* *
64128282 ATGCAAAATTAAGATGACATTTCCATAAGCATTCAAATTGGGACGAAAT-AGACTGTCATG
129 ATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGA-ACTGTCATG
* * ** * * * * *
64128342 GCAAACT-TCTCAACCAAATTTGGTTAAATGCAAAATTAAAAGGACATTTCTATAAGCATTCAAA
1 CCAAACTACCT-TGCTAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* * * * * *
64128406 TTTG-GACGAAATGGACGGTCATGCCAAACTACCTAGCCAAACTGCCTTTCTAAAA-TTGATTGA
65 -TTGAGATGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTACCAAAATTTGATTGA
* * *
64128469 ATGCAAAATTAATAGGACATTTCTATAAGCATTCAAATCGGGACGAAATGAACTGTCATG
129 ATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGAACTGTCATG
* * * * * *
64128529 CAAAACTACCCAGCCAAATTGCCTTGCCAAATTTGATTGAACGTAAAATTTAGAGGAAATTTCTA
1 CCAAACT----A-CC---TTG-C-T---AAAATTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * *
64128594 TAAGCATTCAAATT-AGGACGAAATAGACTGCCATGCCAAACT----A-CC-AA--G---T--CA
53 TAAGCATTCAAATTGA-GATGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTACCA
* * * *
64128645 AAATTTGATTGAATGTAAAACTAAG-AGAACATTTCTATAAG-AGTTCAAATTGGGACAAAATGG
117 AAATTTGATTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCA-TTCAAATTGGGACGAAATGA
* *
64128708 ACAGTTATG
180 ACTGTCATG
* * * *
64128717 CCAAAATTCCCAGCCAAATTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGA-AAAATTTTC
1 CC-AAA---CTA-CC-----T---TGCTAAAA-TTGATTGAATGCAAAATTAAGAGGACA-TTTC
* * * * * * * * *
64128781 GATAAACATTCAAATTGGGAAGAAATGAACTGTCATTCCAAACTACCTAGCCAAACTTCCCT-GC
51 TATAAGCATTCAAATTGAGATGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTACC
* * * * * * *
64128845 AAAAATTGATCGAATGCGAAATTAAGAAGACATTTCTATAAGCATTCGAATTGGTACAAAATGGA
116 AAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGAA
*
64128910 CTGTCATT
181 CTGTCATG
* * *
64128918 CCAAACTACCAACAAAATTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACACTTCAA
1 CCAAACTA-C--C------T---TGCTAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * *
64128983 TAAACATTCAAATTGGGAAGAAATTGACTGTCATGCCAAACTACCCAGCCAAACTTCCCTA-CAA
53 TAAGCATTCAAATTGAGATGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTACCAA
* * * * *
64129047 AAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGTACGAAATGGACT
118 AATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGAACT
*
64129112 CTCATG
183 GTCATG
64129118 CCAAACTACC
1 CCAAACTACC
64129128 CAGCCAAATT
Statistics
Matches: 1979, Mismatches: 347, Indels: 360
0.74 0.13 0.13
Matches are distributed among these distances:
171 1 0.00
172 54 0.03
173 2 0.00
174 1 0.00
175 66 0.03
176 20 0.01
178 1 0.00
180 1 0.00
181 1 0.00
183 20 0.01
184 59 0.03
185 1 0.00
187 121 0.06
188 397 0.20
189 277 0.14
190 13 0.01
191 5 0.00
192 6 0.00
193 9 0.00
194 5 0.00
195 88 0.04
196 59 0.03
197 7 0.00
198 10 0.01
199 9 0.00
200 349 0.18
201 177 0.09
202 131 0.07
203 81 0.04
208 8 0.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (188 bp):
CCAAACTACCTTGCTAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAAT
TGAGATGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTACCAAAATTTGATTGAAT
GCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGAACTGTCATG
Found at i:64126889 original size:87 final size:87
Alignment explanation
Indices: 64126741--64126904 Score: 222
Period size: 87 Copynumber: 1.9 Consensus size: 87
64126731 ACCAAAATGA
* * * * *
64126741 GATTGAATGCAAAATTAAGAATACATTTCTTTAAGCATTCAAATTGGAAGGAAATTAATTGTTAG
1 GATTGAATGCAAAATTAAGAAGAAATTTCTATAAGCATTCAAATTGGAAGGAAATGAATTGTCAG
*
64126806 GCTAAACTACCTTGCTAAAATT
66 GCCAAACTACCTTGCTAAAATT
* * *
64126828 GATTGAATGCAAAATTAAGAGGAAATTTCTATAAGCATTCAAATT-GAGATGAAATGGATTGTCA
1 GATTGAATGCAAAATTAAGAAGAAATTTCTATAAGCATTCAAATTGGA-AGGAAATGAATTGTCA
*
64126892 TGCCAAACTACCT
65 GGCCAAACTACCT
64126905 AGCCAAATTG
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
86 2 0.03
87 64 0.97
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.31
Consensus pattern (87 bp):
GATTGAATGCAAAATTAAGAAGAAATTTCTATAAGCATTCAAATTGGAAGGAAATGAATTGTCAG
GCCAAACTACCTTGCTAAAATT
Found at i:64127168 original size:389 final size:384
Alignment explanation
Indices: 64126430--64129106 Score: 1973
Period size: 389 Copynumber: 7.0 Consensus size: 384
64126420 ACTACACAAC
* * * *
64126430 CAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTACTATAAGCATTCAATT
1 CAAACTACCTTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAAT
* * * * ** * * *
64126495 TGGGATGAAGTAGATTGTCATGTCAAACTACTCT-GCCAAACCACCCTGCAAATATTTGCTTAAA
66 TGGGATGAAATGGACTGTCATGCCAAACTAC-CTAGCCAAACTGCCCTCCAAA-ATTTGATTGAA
* * * * *
64126559 TGCAAAATTAAGAGAACATTTCTATTAGCATTTAAATTGGGACGAAATGGATTGTCATGCCAAAC
129 TGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGGACTGTCATGCCAAAC
* *
64126624 -A---A-C----T-CC-GCCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTGTAAGCAT
194 TACCCAGCAAATTCCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCAT
* * **
64126678 TCAAATTGGGACGAAATGGACTGTAATGCCAAACTACCCAGCCAAACTGCCCTACCAAAATGAGA
258 TCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCCCTA-CAAAATTTGA
** * * * * *
64126743 TTGAATGCAAAATTAAGAATACATTTCTTTAAGCATTCAAATTGGAAGGAAATTAATTGTTAGG
322 TTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATTAACTGTCA-G
* *
64126807 CTAAACTACCTTGCTAAAA-TTGATTGAATGCAAAATTAAGAGGAAATTTCTATAAGCATTCAAA
1 C-AAACTACCTTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* * *
64126871 TTGAGATGAAATGGATTGTCATGCCAAACTACCTAGCCAAATTGCCCTACCAAAATTTGATTGAA
65 TTGGGATGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCT-CCAAAATTTGATTGAA
** * *
64126936 TGC-ACTTTAAGAGGACATTTATATAAGCATTCAAATTAGGACGAAATGGACTGTCATTCCAAAC
129 TGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGGACTGTCATGCCAAAC
* * * * *
64127000 TACCCTAGCAAATTGCCCTACCAAAATTGATTAAATGCAAAAATAAAAGGATATTTCTATAAGCA
194 TACCC-AGCAAATT-CCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA
** ** * *
64127065 TTCAAATTGGGAAAAAAATGGGTTGTCATGCCAAACTACACAACCAAACGGCCCTACCAAAATTT
257 TTCAAATTGGG-ACGAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCCCTA-CAAAATTT
* * * * **
64127130 TATTGAATGAAAAATCAAGAGGACATTTCTATAAGCATTTCAATTTGGGACGAAATGGACTGTCA
320 GATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAATTAACTGTC-
*
64127195 TAT
383 -AG
* * * *
64127198 CAAACTACCTTCCCAAACTGCCCTACAGTATTTGCTTGAATCCATAATTAAGAGGACATTTCTAT
1 CAAACTACC-T-------TG-CC-A-A-AATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT
* * * * *
64127263 TAGCATTTAAATTGGAATGAAATCGACTGTTATGCCAAACTA-CT-------CTG----CCAAAA
54 AAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTCCAAAA
* * * * * * * **
64127316 TTTGATTTAATACACAATTAAGAGGACATTTATATAGGCATTCAAATTGGGACAAAATAAACTGT
119 TTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGGACTGT
* * * * * * *
64127381 CATACCGAACTACCCAGCCAAACTACCATGCTAAAAATGATTGAATGCAAAATTAAGAGAACATT
184 CATGCCAAACTACCCAG-CAAA-TTCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATT
* * * * * * * * * ** *
64127446 TCAATAAGCATTCAAATTAGGACCAAATGAACTATCATGCAAAACTACTCATCCATACTTTCTTG
247 TCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCCCT-
* * * * *
64127511 A-AAAAATTGATTGAACGCAAAATTCAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAACT
311 ACAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATT
* **
64127575 ACCAATC--
376 AACTGTCAG
* * * * * * *
64127582 TAAACTGCCCTGCCAAAATTTGATTGAATGAAAAATTAAAAGGGCATTTCTATAA-AAGTTCAAA
1 CAAACTACCTTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAA
*
64127646 TTGAGACT-AAATGGACTGTCATGCC-AA--A-CT-G-C--ACTG----CCAAAATTTGATTGAA
65 TTGGGA-TGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTCCAAAATTTGATTGAA
* *
64127698 TGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTAGGATGAAATGGACTGTCATGCCAAAC
129 TGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGGACTGTCATGCCAAAC
* *
64127763 TACCCTA-C--A---------AAAATTGATTGAATGCAAAATTAAGAGGACATTTCAATAGGCAT
194 TACCC-AGCAAATTCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCAT
* * * * *
64127816 TCAAATTGAGATGAAATAGACTGTCATGCCAAACTA-CCAAGCCAAACTGCCCTGACAAATTTTT
258 TCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAA-CCAAACTGCCCT-ACAAAATTTG
* * * * * *
64127880 ATTAAAAGCAAAATTAAGAGAACATTTTTATAAG-AGTTCAAATTGGGACGAAA-TAGACTATTA
321 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAATTA-ACTGTCA
64127943 TG
384 -G
* * * *
64127945 CCAAACTACTCCGCCAAATTACTCTAGAAGAATTTGATTGAATGCAAAAATAAGAGGAAATTTTT
1 -CAAACTA-----CC---TTGC-C---AA-AATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * ** **
64128010 ATAA--A--C--ATTGGGATGAAATGGACTCTCATGTCAAACTACCTAATCAAACTATCCTGCCA
52 ATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCT-CCA
* * * **
64128069 AAA-TTGATTGAATGCAAAATTTAGAAGACATTTTTATAAGCATTCAAATTAGGACGAAATAAAC
116 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGGAC
* * * * * ** * * * *
64128133 AGTTATCCCAAACTACCCAACCAAACTACTTTGCCAAGATTTTATTAAATGCAAAATTAAGAGGG
181 TGTCATGCCAAACTACCC-AGCAAA-TTCCCTGCCAA-AATTGATTGAATGCAAAATTAAGAGGA
* * * *
64128198 CATTTCTATAAG-AGTTCAAATTGAGG-TGAATTGGGCTGTCATGCCAAACTACCCAGCCAAACT
243 CATTTCTATAAGCA-TTCAAATTG-GGACGAAATGGACTGTCATGCCAAACTACCCAACCAAACT
* * * * *
64128261 ACCCTTCCAAAATTTTATTGAATGCAAAATTAAGATGACATTTCCATAAGCATTCAAATTGGGAC
306 GCCC-TACAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
64128326 GAAA-TAGACTGTCATGG
370 GAAATTA-ACTGTCA--G
* ** * * *
64128343 CAAACT-TCTCAACC-AAATTTGGTTAAATGCAAAATTAAAAGGACATTTCTATAAGCATTCAAA
1 CAAACTACCT-TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* * * * *
64128406 TTTGGACGAAATGGACGGTCATGCCAAACTACCTAGCCAAACTGCCTTTCTAAAA-TTGATTGAA
65 TTGGGATGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCC-CTCCAAAATTTGATTGAA
* ** * *
64128470 TGCAAAATTAATAGGACATTTCTATAAGCATTCAAATCGGGACGAAATGAACTGTCATGCAAAAC
129 TGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGGACTGTCATGCCAAAC
* * * * * *
64128535 TACCCAGCCAAATTGCCTTGCCAAATTTGATTGAACGTAAAATTTAGAGGAAATTTCTATAAGCA
194 TACCCAG-CAAATT-CCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA
* * *
64128600 TTCAAATTAGGACGAAATAGACTGCCATGCCAAACT-----ACC-AA--G---T-CAAAATTTGA
257 TTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCCCTACAAAATTTGA
* * * * * *
64128653 TTGAATGTAAAACTAAGAGAACATTTCTATAAG-AGTTCAAATTGGGACAAAATGGACAGTTATG
322 TTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAAT-TA-A---CTG
64128717 CCAAAATTCCCAG
381 -------T--CAG
* * * * * * *
64128730 CCAAATTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGA-AAAATTTTCGATAAACATTCAA
1 -CAAACTACCTTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACA-TTTCTATAAGCATTCAA
* * * * * * *
64128794 ATTGGGAAGAAATGAACTGTCATTCCAAACTACCTAGCCAAACTTCCCTGCAAAAATTGATCGAA
64 ATTGGGATGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTCCAAAATTTGATTGAA
* * * * *
64128859 TGCGAAATTAAGAAGACATTTCTATAAGCATTCGAATT-GGTACAAAATGGACTGTCATTCCAAA
129 TGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGG-ACGAAATGGACTGTCATGCCAAA
* * * *
64128923 CTA-CCAACAAAATTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACACTTCAATAAA
193 CTACCCAGC-AAA-TTCCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAG
* * * * *
64128987 CATTCAAATTGGGAAGAAATTGACTGTCATGCCAAACTACCCAGCCAAACTTCCCTACAAAAATT
255 CATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCCCTACAAAATTT
* *
64129052 GATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGTACGAAAT
320 GATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
64129107 GGACTCTCAT
Statistics
Matches: 1811, Mismatches: 342, Indels: 270
0.75 0.14 0.11
Matches are distributed among these distances:
358 2 0.00
359 82 0.05
360 53 0.03
364 5 0.00
369 6 0.00
370 1 0.00
371 25 0.01
372 135 0.07
373 5 0.00
374 3 0.00
375 57 0.03
376 60 0.03
377 130 0.07
378 18 0.01
379 3 0.00
380 2 0.00
381 1 0.00
382 3 0.00
383 105 0.06
384 15 0.01
385 1 0.00
386 2 0.00
387 6 0.00
388 159 0.09
389 454 0.25
390 76 0.04
391 114 0.06
392 2 0.00
394 2 0.00
395 4 0.00
396 3 0.00
397 141 0.08
398 9 0.00
399 1 0.00
400 2 0.00
401 55 0.03
402 4 0.00
403 65 0.04
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (384 bp):
CAAACTACCTTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAAT
TGGGATGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTCCAAAATTTGATTGAATG
CAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGGACTGTCATGCCAAACTA
CCCAGCAAATTCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
AATTGGGACGAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCCCTACAAAATTTGATTGA
ATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATTAACTGTCAG
Found at i:64127359 original size:578 final size:568
Alignment explanation
Indices: 64126243--64128435 Score: 1189
Period size: 578 Copynumber: 3.8 Consensus size: 568
64126233 CTGCCCTGCC
*
64126243 AAAATTTGGTTGAATGCAAATATAAGAGGACAATTTTATAAGCATTCAAATTGGAACAAAATGGA
1 AAAATTTGATTGAATGCAAATATAAGAGGACAATTTTATAAGCATTCAAATTGGAACAAAATGGA
* * *
64126308 CTATCAAGCCAAACTACCCAGCTAAACTACTCTGACAAAATTGATTGAAAGCAAAAATAAGATGA
66 CTATCAAGCCAAACTACCCAGCCAAACTACCCTGACAAAATTGATTGAAAGCAAAAATAAGAGGA
*
64126373 CATTTATATAAGGATTCAAATTGCGACAAAATAAACTGTCATGCCAAACTACACAACCAAACTGC
131 CATTTATATAAGCATTCAAATTGCGACAAAATAAACTGTCATGCCAAACTACACAACCAAACTGC
* * * * * **
64126438 CCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTACTATAAGCATTCAATTTGGGATGA
196 CCTACCAAAATTTGATTAAATGCAAAAATAAAAGGACATTACTATAAGCATTCAAATTGGGAAAA
* * * ** * * * *
64126503 AGTAGATTGTCATGTCAAACTACTCTGCCAAACCACCCTGCAAATATTTGCTTAAATGCAAAATT
261 AATAGATTGTCATGCCAAACTACACAACCAAACCACCCTCCAAATATTTGATTAAATGAAAAATC
* * *
64126568 AAGAGAACATTTCTATTAGCATTTAAATTGGGACGAAATGGATTGTCATGCCAAACAACTCCGCC
326 AAGAGAACATTTCTATAAGCATTTAAATTGGGACGAAATGGACTGTCATACCAAACAACTCCGCC
* * * *
64126633 AAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTGTAAGCATTCAAATTGGGACGAAATGGA
391 AAAATTTGATTGAATCAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGAACGAAATCGA
* *
64126698 CTGTAATGCCAAACTACCCAGCCAAACTGCCCTACCAAAATGAGATTGAATGCAAAATTAAGAAT
456 CTGTAATGCCAAACT-------C--ACT--CCTACCAAAATGAGATTGAATACAAAATTAAGAAG
* *
64126763 ACATTTCTTTAAGCATTCAAATTGGAAGGAAATTAATTGTTAGGCTAAACTACCTTGCT
510 ACATTTATATAAGCATTCAAATTGGAAGGAAATTAATTGTTAGGCTAAACTACCTTGCT
**
64126822 AAAA-TTGATTGAATGCAAA-ATTAAGAGGA-AATTTCTATAAGCATTCAAATT-GAGATGAAAT
1 AAAATTTGATTGAATGCAAATA-TAAGAGGACAATTT-TATAAGCATTCAAATTGGA-ACAAAAT
* * * * * * * ***
64126883 GGATTGTCATGCCAAACTACCTAGCCAAATTGCCCT-ACCAAAATTTGATTGAATGC-ACTTTAA
63 GGACTATCAAGCCAAACTACCCAGCCAAACTACCCTGA-CAAAA-TTGATTGAAAGCAAAAATAA
* ** * * * *
64126946 GAGGACATTTATATAAGCATTCAAATTAG-GACGAAATGGACTGTCATTCCAAACTACCCTAGCA
126 GAGGACATTTATATAAGCATTCAAATT-GCGACAAAATAAACTGTCATGCCAAACTACACAACCA
* * *
64127010 AATTGCCCTACCAAAA-TTGATTAAATGCAAAAATAAAAGGATATTTCTATAAGCATTCAAATTG
190 AACTGCCCTACCAAAATTTGATTAAATGCAAAAATAAAAGGACATTACTATAAGCATTCAAATTG
* * ** * *
64127074 GGAAAAAAATGGGTTGTCATGCCAAACTACACAACCAAACGGCCCTACCAAA-ATTTTATTGAAT
255 GG-AAAAAATAGATTGTCATGCCAAACTACACAACCAAACCACCCT-CCAAATATTTGATTAAAT
* * *
64127138 GAAAAATCAAGAGGACATTTCTATAAGCATTTCAATTTGGGACGAAATGGACTGTCATATCAAAC
318 GAAAAATCAAGAGAACATTTCTATAAGCATTT-AAATTGGGACGAAATGGACTGTCATACCAAAC
* * * * * *
64127203 TACCTTCCCAAACTGCCCTACAGTATTTGCTTGAATCCATAATTAAGAGGACATTTCTATTAGCA
382 -AAC-T--C---C-G-CC-A-A-AATTTGATTGAATCAAAAATTAAGAGGACATTTCTATAAGCA
* * * * ** * *
64127268 TTTAAATTGGAATGAAATCGACTGTTATGCCAAACT-ACT-CTGCCAAAATTTGATTTAATACAC
435 TTCAAATTGGAACGAAATCGACTGTAATGCCAAACTCACTCCTACCAAAATGAGATTGAATACAA
* * * ** * *
64127331 AATTAAGAGGACATTTATATAGGCATTCAAATTGGGACAAAATAAACTGTCATACCGAACTACCC
500 AATTAAGAAGACATTTATATAAGCATTCAAATTGGAAGGAAATTAATTGT--TA--G--------
* *
64127396 AGCCAAACTACCATGCT
553 -GCTAAACTACCTTGCT
* * * *
64127413 AAAA-ATGATTGAATGCAAA-ATTAAGAGAAC-ATTTCAATAAGCATTCAAATTAGG-ACCAAAT
1 AAAATTTGATTGAATGCAAATA-TAAGAGGACAATTT-TATAAGCATTCAAATT-GGAACAAAAT
* * * * * * ** * * * * *
64127474 GAACTATCATGCAAAACTACTCATCCATACTTTCTTGAAAAAATTGATTGAACGCAAAATTCAGA
63 GGACTATCAAGCCAAACTACCCAGCCAAACTACCCTGACAAAATTGATTGAAAGCAAAAATAAGA
* * * * *
64127539 AGACATTTCTATAAGCATTCAAATTGGGAC----GAAAC--T-A--CC-AA-T------CTAAAC
128 GGACATTTATATAAGCATTCAAATTGCGACAAAATAAACTGTCATGCCAAACTACACAACCAAAC
* * * * * *
64127587 TGCCCTGCCAAAATTTGATTGAATG-AAAAATTAAAAGGGCATTTCTATAA-AAGTTCAAATTGA
193 TGCCCTACCAAAATTTGATTAAATGCAAAAA-TAAAAGGACATTACTATAAGCA-TTCAAATTGG
** * * * * *
64127650 GACTAAATGGACTGTCATGCCAAACT-----------GCA--CTGCCAAA-ATTTGATTGAATGC
256 GAAAAAATAGATTGTCATGCCAAACTACACAACCAAACCACCCT-CCAAATATTTGATTAAATGA
* * * * * * * *
64127701 AAAATTAAGAGGACATTTCTATAAACATTCAAATTAGGATGAAATGGACTGTCATGCCAAACTAC
320 AAAATCAAGAGAACATTTCTATAAGCATTTAAATTGGGACGAAATGGACTGTCATACCAAACAAC
** * * * *
64127766 -CCTACAAAAATTGATTGAATGC-AAAATTAAGAGGACATTTCAATAGGCATTCAAATT-GAGAT
385 TCCGCCAAAATTTGATTGAAT-CAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGA-AC
* * * *** *
64127828 GAAATAGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGA-CAAATTTTTATT-AAAAGCAA
448 GAAATCGACTGTAATGCCAAACT-------C--ACT--CCT-ACCAAAATGAGATTGAATA-CAA
* * * * * * *
64127891 AATTAAG-AGAACATTTTTATAAG-AGTTCAAATTGGGACGAAA-TAGACTATTATGCCAAACTA
500 AATTAAGAAG-ACATTTATATAAGCA-TTCAAATTGGAAGGAAATTA-ATTGTTAGGCTAAACTA
*
64127953 CTCCGCCAAATTACTCT
562 -----CC---TT--GCT
* * **
64127970 AGAAGAATTTGATTGAATGCAAAAATAAGAGGA-AATTTTTATAA--A--C--ATTGGGATGAAA
1 --AA-AATTTGATTGAATGCAAATATAAGAGGACAA-TTTTATAAGCATTCAAATTGGAACAAAA
* * * * ** * * * * *
64128028 TGGACTCTCATGTCAAACTACCTAATCAAACTATCCTGCCAAAATTGATTGAATGCAAAATTTAG
62 TGGACTATCAAGCCAAACTACCCAGCCAAACTACCCTGACAAAATTGATTGAAAGCAAAAATAAG
* * * * * * *
64128093 AAGACATTTTTATAAGCATTCAAATTAG-GACGAAATAAACAGTTATCCCAAACTACCCAACCAA
127 AGGACATTTATATAAGCATTCAAATT-GCGACAAAATAAACTGTCATGCCAAACTACACAACCAA
* ** * * * * * * *
64128157 ACTACTTTGCCAAGATTTTATTAAATGCAAAATTAAGAGGGCATTTCTATAAG-AGTTCAAATTG
191 ACTGCCCTACCAAAATTTGATTAAATGCAAAAATAAAAGGACATTACTATAAGCA-TTCAAATTG
** * * ** * * * * *
64128221 AGG-TGAATTGGGCTGTCATGCCAAACTACCCAGCCAAACTACCCTTCCAAA-ATTTTATTGAAT
255 -GGAAAAAATAGATTGTCATGCCAAACTACACAACCAAACCACCC-TCCAAATATTTGATTAAAT
* * * * * **
64128284 GCAAAATTAAGATG-ACATTTCCATAAGCATTCAAATTGGGACGAAATAGACTGTCATGGCAAAC
318 GAAAAATCAAGA-GAACATTTCTATAAGCATTTAAATTGGGACGAAATGGACTGTCATACCAAAC
** ** * * *
64128348 TTCTCAACC-AAATTTGGTTAAATGC-AAAATTAAAAGGACATTTCTATAAGCATTCAAATTTGG
382 AACTCCGCCAAAATTTGATTGAAT-CAAAAATTAAGAGGACATTTCTATAAGCATTCAAA-TTGG
* * *
64128411 -ACGAAATGGACGGTCATGCCAAACT
445 AACGAAATCGACTGTAATGCCAAACT
64128436 ACCTAGCCAA
Statistics
Matches: 1268, Mismatches: 226, Indels: 234
0.73 0.13 0.14
Matches are distributed among these distances:
546 2 0.00
547 72 0.06
548 2 0.00
549 1 0.00
550 1 0.00
552 3 0.00
554 2 0.00
555 87 0.07
556 1 0.00
557 6 0.00
558 2 0.00
559 14 0.01
560 81 0.06
561 73 0.06
562 5 0.00
564 2 0.00
565 2 0.00
566 1 0.00
572 73 0.06
573 5 0.00
574 42 0.03
575 37 0.03
577 53 0.04
578 274 0.22
579 48 0.04
580 5 0.00
581 6 0.00
582 3 0.00
583 2 0.00
584 1 0.00
585 141 0.11
586 7 0.01
587 4 0.00
588 2 0.00
589 1 0.00
590 13 0.01
591 192 0.15
592 1 0.00
593 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (568 bp):
AAAATTTGATTGAATGCAAATATAAGAGGACAATTTTATAAGCATTCAAATTGGAACAAAATGGA
CTATCAAGCCAAACTACCCAGCCAAACTACCCTGACAAAATTGATTGAAAGCAAAAATAAGAGGA
CATTTATATAAGCATTCAAATTGCGACAAAATAAACTGTCATGCCAAACTACACAACCAAACTGC
CCTACCAAAATTTGATTAAATGCAAAAATAAAAGGACATTACTATAAGCATTCAAATTGGGAAAA
AATAGATTGTCATGCCAAACTACACAACCAAACCACCCTCCAAATATTTGATTAAATGAAAAATC
AAGAGAACATTTCTATAAGCATTTAAATTGGGACGAAATGGACTGTCATACCAAACAACTCCGCC
AAAATTTGATTGAATCAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGAACGAAATCGA
CTGTAATGCCAAACTCACTCCTACCAAAATGAGATTGAATACAAAATTAAGAAGACATTTATATA
AGCATTCAAATTGGAAGGAAATTAATTGTTAGGCTAAACTACCTTGCT
Found at i:64127829 original size:87 final size:88
Alignment explanation
Indices: 64127512--64127853 Score: 389
Period size: 88 Copynumber: 3.9 Consensus size: 88
64127502 ACTTTCTTGA
* * * * * *
64127512 AAAAATTGATTGAACGCAAAATTCAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAACT--
1 AAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGAGATGAAA-TGG
* *
64127575 AC---CAAT-CTAAACTGCCCTGCC
65 ACTGTC-ATGCCAAACTACCCTGCC
* * * *
64127596 AAAATTTGATTGAATGAAAAATTAAAAGGGCATTTCTATAAA-AGTTCAAATTGAGACT-AAATG
1 AAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACA-TTCAAATTGAGA-TGAAATG
* *
64127659 GACTGTCATGCCAAACTGCACTGCC
64 GACTGTCATGCCAAACTACCCTGCC
*
64127684 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATT-AGGATGAAATGG
1 AAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGA-GATGAAATGG
*
64127748 ACTGTCATGCCAAACTACCCT-AC
65 ACTGTCATGCCAAACTACCCTGCC
* ** *
64127771 AAAAATTGATTGAATGCAAAATTAAGAGGACATTTCAATAGGCATTCAAATTGAGATGAAATAGA
1 AAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGAGATGAAATGGA
64127836 CTGTCATGCCAAACTACC
66 CTGTCATGCCAAACTACC
64127854 AAGCCAAACT
Statistics
Matches: 223, Mismatches: 23, Indels: 21
0.84 0.09 0.08
Matches are distributed among these distances:
83 2 0.01
84 48 0.22
85 2 0.01
87 81 0.36
88 89 0.40
89 1 0.00
ACGTcount: A:0.42, C:0.17, G:0.16, T:0.26
Consensus pattern (88 bp):
AAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGAGATGAAATGGA
CTGTCATGCCAAACTACCCTGCC
Found at i:64127842 original size:175 final size:172
Alignment explanation
Indices: 64127512--64127850 Score: 409
Period size: 175 Copynumber: 2.0 Consensus size: 172
64127502 ACTTTCTTGA
* * *
64127512 AAAAATTGATTGAACGCAAAATTCAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAACTAC
1 AAAAATTGATTGAACGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTAGGACGAAACTAC
* * * * * *
64127577 CAATCTAAACTGCCCTGCCAAAATTTGATTGAATGAAAAATTAAAAGGGCATTTCTATAAAAGTT
66 CAATCCAAACTACCCTGACAAAAATTGATTGAATGAAAAATTAAAAGGACATTTCAATAAAAGTT
*
64127642 CAAATTGAGACTAAATGGACTGTCATGCCAAACTGCACTGCC
131 CAAATTGAGACTAAATAGACTGTCATGCCAAACTGCACTGCC
* * * *
64127684 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTAGGATGAAA-TGG
1 AAAAATTGATTGAACGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTAGGACGAAACT--
* *
64127748 ACTGTC-ATGCCAAACTACCCT-ACAAAAATTGATTGAATGCAAAATTAAGAGGACATTTCAATA
64 AC---CAAT-CCAAACTACCCTGACAAAAATTGATTGAATGAAAAATTAAAAGGACATTTCAATA
**
64127811 GGCA-TTCAAATTGAGA-TGAAATAGACTGTCATGCCAAACT
125 -AAAGTTCAAATTGAGACT-AAATAGACTGTCATGCCAAACT
64127851 ACCAAGCCAA
Statistics
Matches: 141, Mismatches: 18, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
171 1 0.01
172 54 0.38
173 2 0.01
174 1 0.01
175 71 0.50
176 12 0.09
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (172 bp):
AAAAATTGATTGAACGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTAGGACGAAACTAC
CAATCCAAACTACCCTGACAAAAATTGATTGAATGAAAAATTAAAAGGACATTTCAATAAAAGTT
CAAATTGAGACTAAATAGACTGTCATGCCAAACTGCACTGCC
Found at i:64128271 original size:13 final size:13
Alignment explanation
Indices: 64128240--64128264 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64128230 GGGCTGTCAT
64128240 GCCAAACTACCCA
1 GCCAAACTACCCA
64128253 GCCAAACTACCC
1 GCCAAACTACCC
64128265 TTCCAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.48, G:0.08, T:0.08
Consensus pattern (13 bp):
GCCAAACTACCCA
Found at i:64128718 original size:88 final size:88
Alignment explanation
Indices: 64128557--64128721 Score: 217
Period size: 88 Copynumber: 1.9 Consensus size: 88
64128547 TTGCCTTGCC
* * *
64128557 AAATTTGATTGAACGTAAAATTTAGAGGAAATTTCTATAAGCATTCAAATTAGGACGAAATAGAC
1 AAATTTGATTGAACGTAAAACTAAGAGGAAATTTCTATAAGCATTCAAATTAGGACAAAATAGAC
*
64128622 TGCCATGCCAAACTACCAAGTCA
66 AGCCATGCCAAACTACCAAGTCA
* * *
64128645 AAATTTGATTGAATGTAAAACTAAGA-GAACATTTCTATAAG-AGTTCAAATTGGGACAAAATGG
1 AAATTTGATTGAACGTAAAACTAAGAGGAA-ATTTCTATAAGCA-TTCAAATTAGGACAAAATAG
**
64128708 ACAGTTATGCCAAA
64 ACAGCCATGCCAAA
64128722 ATTCCCAGCC
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
87 4 0.06
88 62 0.94
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.27
Consensus pattern (88 bp):
AAATTTGATTGAACGTAAAACTAAGAGGAAATTTCTATAAGCATTCAAATTAGGACAAAATAGAC
AGCCATGCCAAACTACCAAGTCA
Found at i:64128734 original size:13 final size:13
Alignment explanation
Indices: 64128716--64128750 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
64128706 GGACAGTTAT
64128716 GCCAAAATTCCCA
1 GCCAAAATTCCCA
* *
64128729 GCCAAATTTCCCT
1 GCCAAAATTCCCA
64128742 GCCAAAATT
1 GCCAAAATT
64128751 TGATTGAATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.34, C:0.34, G:0.09, T:0.23
Consensus pattern (13 bp):
GCCAAAATTCCCA
Found at i:64130639 original size:153 final size:155
Alignment explanation
Indices: 64130364--64130658 Score: 456
Period size: 153 Copynumber: 1.9 Consensus size: 155
64130354 TCAAAGCTTT
* *
64130364 TTTTAAAGAAAAATCACTATTTTTCTTAAAGATCAAAACTTTATTTCGAAATAGTTGAAAAAGAT
1 TTTTAAAGAAAAATCACTACTTTTCTTAAAGATCAAAACTTTATTTCGAAATAGTTGAAAAAAAT
* *
64130429 CAAAATTTTATTTTAAAAATTTTAACTTTTCCTTTAAAACGACTAAAAAACATATTTTT-TTCTT
66 CAAAATCTTATTTTAAAAATTTTAACTTTTCCTTTAAAACGACTAAAAAACAGATTTTTATT-TT
64130493 AAAAATCTAAACTTTCATTTTTTTTC
130 AAAAATCTAAACTTTCATTTTTTTTC
**
64130519 TTTTAAA-AAAAATCACTACTTTTCTTAAAGATCAAAGTTTTTATTTCGAAATAGTTGAAAAAAA
1 TTTTAAAGAAAAATCACTACTTTTCTTAAAGATCAAA-ACTTTATTTCGAAATAGTTGAAAAAAA
*
64130583 TCAAAA-CTTATTTT-AAAATTTTAAAC-TTTCCTTTAAAATGACTAAAAAACAGATTTTTATTT
65 TCAAAATCTTATTTTAAAAATTTT-AACTTTTCCTTTAAAACGACTAAAAAACAGATTTTTATTT
*
64130645 TTAAAATCTAAACT
129 TAAAAATCTAAACT
64130659 CTCTTTTAAA
Statistics
Matches: 129, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
153 52 0.40
154 40 0.31
155 37 0.29
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.42
Consensus pattern (155 bp):
TTTTAAAGAAAAATCACTACTTTTCTTAAAGATCAAAACTTTATTTCGAAATAGTTGAAAAAAAT
CAAAATCTTATTTTAAAAATTTTAACTTTTCCTTTAAAACGACTAAAAAACAGATTTTTATTTTA
AAAATCTAAACTTTCATTTTTTTTC
Found at i:64130883 original size:20 final size:21
Alignment explanation
Indices: 64130846--64130885 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
64130836 TGTCTATTAT
64130846 AAAAAAAAAGAAAGATAGAAG
1 AAAAAAAAAGAAAGATAGAAG
64130867 AAAAGAAAAA-AAA-ATAGAA
1 AAAA-AAAAAGAAAGATAGAA
64130886 TGCTTGTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 7 0.39
22 5 0.28
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (21 bp):
AAAAAAAAAGAAAGATAGAAG
Found at i:64131384 original size:101 final size:100
Alignment explanation
Indices: 64131212--64134391 Score: 2746
Period size: 101 Copynumber: 31.9 Consensus size: 100
64131202 TACAGCCAAT
* * * *
64131212 ATTTGATTGAATGTAAAATTAAAAAGACATTTCTATAAGCATTTAAATTGGGACGAAATGGACTG
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
* * *
64131277 TCATGCCAAACTATCCAGCAAAACAACCCTGCAAA
66 TCATGCCAAACTACCCAGCCAAACTACCCTGCAAA
* * *
64131312 TATTTGATTGAATGCAAAATTAAGAAGTCATTTCTATAAGCATTCAAATTGGGATGAAATGGACT
1 -ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
* *
64131377 GTCATGCCAAAATA-CCAGCCAAAC-AGCCCTGCTAAT
65 GTCATGCCAAACTACCCAGCCAAACTA-CCCTGC-AAA
* * * * *
64131413 GTTTGATTGAATGAAAAATTAAGAAGCCATTGCTATAAGCATTCAAATTGGGACGAAATGGACTG
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
* ** *
64131478 TCATGCCAAACTACCCAGCCAAATTGTCTTGCCAAA
66 TCATGCCAAACTACCCAGCCAAACTACCCTG-CAAA
* * *** *
64131514 A-TTGATTGAACGAAAAATTACGAAAAATTAAGAGGACATTTTTATAAGCATTCAAATTTATACA
1 ATTTGATT----G---AA-T--GCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
* * * ** *
64131578 AAAAGGACTGTCAAGCCAAACTACCAAGCCAAACTGTCCTACCAAA
56 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCT-GCAAA
* * * * *
64131624 ATTTGATTGAATGCAGAATTAAAATGACATTTCTATAAG-AGTTAAAATAT-GGATGAAATGGAC
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAAT-TGGGACGAAATGGAC
* * * * **
64131687 TATCATGCAAAACTACCCAGCCAAATTTCTCAAGCAAA
64 TGTCATGCCAAACTACCCAGCCAAACTAC-CCTGCAAA
* * * * *
64131725 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACGTTCAAATTGGTATGAAATGAACTG
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
* * * **
64131790 TCATGCCAAACTACCCAACAAAATTTGCCTGCCAAA
66 TCATGCCAAACTACCCAGCCAAACTACCCTG-CAAA
* * * * ** * *
64131826 ATTTGATTAAATGCAAAATTAAGAGGACATTTCGACAAACATTCAAATTTTGAAGCAATGGACTG
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
* * * * *
64131891 TAATGTCAAACTACCCAACCAAACTTCCCTGAAAA
66 TCATGCCAAACTACCCAGCCAAACTACCCTGCAAA
* * * * *
64131926 AATTGATTGAATACAAAATTAAGAAGGA-ATTTCTTTAAGCATTCAAATTTGGACGGAATGGACT
1 ATTTGATTGAATGCAAAATTAAG-AGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
*
64131990 GTCATGACAAACTACCCAGCCAAACTACCCTGCAAA
65 GTCATGCCAAACTACCCAGCCAAACTACCCTGCAAA
* * * * * * *
64132026 AATTGATCGAACGCAAAATTAAAAGGACATTTCTATAAACATTCAAATTGGGACAAAATGGACTA
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
* * * *
64132091 TCATG-CAGAACTACCAAGCGAAACTGCCCTACTAAA
66 TCATGCCA-AACTACCCAGCCAAACTACCCTGC-AAA
* ** * *
64132127 ATTTGATTAAATGCAAAATTAAGATTACATTTCTATAAG-AGTTCAAATTTGGACGAAATAGACT
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAATGGACT
* * * * * * *
64132191 ATCATGCCAAACTACCTAACCAAATTTCCCAGCCGAA
65 GTCATGCCAAACTACCCAGCCAAACTACCCTG-CAAA
* * *
64132228 ATTTGATTGAATGCAAAATTGAAAAGGACATTTCTATAAACTTTCAAATTGGGACGAAATGGACT
1 ATTTGATTGAATGCAAAATT-AAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
*
64132293 ATCATGCCAAACTACCCAGCCAAACTA-CCTCGCCAAA
65 GTCATGCCAAACTACCCAGCCAAACTACCCT-G-CAAA
* * * * * *
64132330 ATTTGATTGAATACAAAATTAAGAAGATATTTCTATAACCATTCAAATTGGGATGAAATAGACTG
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
*
64132395 TCATGGCAAACTACCCAGCCAAACTACCCTGCCAAA
66 TCATGCCAAACTACCCAGCCAAACTACCCTG-CAAA
* * * * *
64132431 A-TTGATTAAATGTAAAATTAAGAGGACATTTCTATAAGCATTAAAATTTGGACGGAATGGACTG
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
*
64132495 TCATGACAAACTACCCAGCCAAACTACCCTGCAAA
66 TCATGCCAAACTACCCAGCCAAACTACCCTGCAAA
* * * * * * *
64132530 AATTGATCGAACGCAAAATTAAAAGGACATTTCTATAAACATTCAAATTGGGACAAAATGGACTA
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
* * * *
64132595 TCATG-CAGAACTACCAAGCGAAACTGCCCTACTAAA
66 TCATGCCA-AACTACCCAGCCAAACTACCCTGC-AAA
* ** * *
64132631 ATTTGATTAAATGCAAAATTAAGATTACATTTCTATAAG-AGTTCAAATTTGGACGAAATAGACT
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAATGGACT
* * * * * * *
64132695 ATCATGCCAAACTACCTAACCAAATTTCCCAGCCGAA
65 GTCATGCCAAACTACCCAGCCAAACTACCCTG-CAAA
* * *
64132732 ATTTGATTGAATGCAAAATTGAAAAGGACATTTCTATAAACTTTCAAATTGGGACGAAATGGACT
1 ATTTGATTGAATGCAAAATT-AAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
*
64132797 ATCATGCCAAACTACCCAGCCAAACCT-CCCTGCCAAA
65 GTCATGCCAAACTACCCAGCCAAA-CTACCCTG-CAAA
* ** * *
64132834 A-TTGATTGAATACAAAATTAAGATAACATTTCTATAAGCATTCAAATTGGGACAAAATGGACTA
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
* * **
64132898 TGATGCCAAACT-TCCATGCCAAA-TTTCCTAGCCAAA
66 TCATGCCAAACTACCCA-GCCAAACTACCCT-G-CAAA
* * *
64132934 ATTTGATTGAATGCAAAATTGAA-AGGACATTT-TGATAAACTTTCAAATTGGGACAAAATGGAC
1 ATTTGATTGAATGCAAAATT-AAGAGGACATTTCT-ATAAGCATTCAAATTGGGACGAAATGGAC
* * * * *
64132997 TATCTTGTCAAACTACCCAGCCAAACCTA-CTTACCAAA
64 TGTCATGCCAAACTACCCAGCCAAA-CTACCCT-GCAAA
* ** * * * * **
64133035 A-TAGATTGAATGCAAAATTAAGACAACATTTCTATAAGCAATC-AACTGGGAATGAAATGAAAA
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGG-ACGAAATGGACT
* * * * *
64133098 GTGATGCCAAACTACACAGCCAAACTGCCTTGCCAAT
65 GTCATGCCAAACTACCCAGCCAAACTACCCTG-CAAA
* * *
64133135 ATTTGATTGAGTGCACAATTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTG
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
* * ** * *
64133200 TCATGCCAAGCTACCAAGCCAAACTACGTTACCAAG
66 TCATGCCAAACTACCCAGCCAAACTACCCT-GCAAA
* * * ** *
64133236 ATTTGATTGAATGCAAAATTAAGTGAACATTTCTATAAGCATTCAAAATGGGATAAAATGAACTG
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
*
64133301 TCATGCCAAACT----A-CC---CT--GC--CAAA
66 TCATGCCAAACTACCCAGCCAAACTACCCTGCAAA
* * * * * **
64133324 ATTTGAGTGAATGAAAAATTAAGAGGGCATTTCTATGAA-CATTCAAATTAGAACGAAATGGTTT
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT-AAGCATTCAAATTGGGACGAAATGGACT
* ** * * ***
64133388 GTAATGCCAAACTACCTTGCAAAAATTTATTTAATGCAAA
65 GTCATGCCAAACTACCCAGC-CAAA-CTA--CCCTGCAAA
* * * * *
64133428 A-TT-A-AGAA-G-ACAATTCTATAGG-CA----T-T---C----AAATTGGGAC-AGAATAGAC
1 ATTTGATTGAATGCAAAATT-AAGAGGACATTTCTATAAGCATTCAAATTGGGACGA-AATGGAC
* * * * * *
64133474 TATCATGCCAAATTATCAAGCCAAACTGCCTTGACAAA
64 TGTCATGCCAAACTACCCAGCCAAACTACCCTG-CAAA
* * * *
64133512 ATTTTATTGAATGCAAAATTAAAAGGACATTTCTATAAG-AGTTCAAATTGGGATGAAATGGATT
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAATGGACT
* * * * *
64133576 GTTATGCCAAACTACCCAACCAAATTGCTCTAG-AATA
65 GTCATGCCAAACTACCCAGCCAAACTACCCT-GCAA-A
* * * * * **
64133613 ATTTGATTCAATACAAAATTAAGAGGATATTTTTATAAACATTCAAATTAAGACG-AA---A-TG
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
* * **
64133673 --A----AAACTATCCAGGCAAACTGTCCTGCCAAA
66 TCATGCCAAACTACCCAGCCAAACTACCCTG-CAAA
* * * * * * *
64133703 A-TTGATTGAATGCAAAATTAATAAGACATTTTTATAAGCATTCAAATTAGGATGAAATAGACCG
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
* **
64133767 TCATACCAAACTACCCAGCCAAACTACTTTGTCAAA
66 TCATGCCAAACTACCCAGCCAAACTACCCTG-CAAA
* * *
64133803 ATTTTATTGAATGCAAAATTAAGAGGACATTTCTATAAG-AGTTCAAATTGGGATGAAATGGGCT
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAATGGACT
*
64133867 ATCATGCCAAACTACCCAGCCAAACTA-CCTCGCCAAA
65 GTCATGCCAAACTACCCAGCCAAACTACCCT-G-CAAA
* * * * * *
64133904 ATTTGATTGAATACAAAATTAAGAAGATATTTCTATAACCATTCAAATTGGGATGAAATAGACTG
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
*
64133969 TCATGGCAAACTACCCAGCCAAACTACCCTGCCAAA
66 TCATGCCAAACTACCCAGCCAAACTACCCTG-CAAA
* * * * *
64134005 A-TTGATTAAATGTAAAATTAAGAGGACATTTCTATAAGCATTAAAATTGGGATGAAATGGACTA
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
*
64134069 TCATGGCAAACTACCCAGCCAAACTACCCTGCCAAA
66 TCATGCCAAACTACCCAGCCAAACTACCCTG-CAAA
* * * * *
64134105 A-TTGATTAAATGTAAAATTAAGAGGACATTTCTATAAGCATTAAAATTGGGATGAAATGGACTA
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
*
64134169 TCATGGCAAACTACCCAGCCAAACTACCCTGCCAAA
66 TCATGCCAAACTACCCAGCCAAACTACCCTG-CAAA
* * * *
64134205 A-TTGATTAAATGCAAAATTAAGAGGACATTTCGATAAGCGTTAAAATTGGGACGAAATGGA-TG
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT-
* ** * *
64134268 GTCATGTCAAACTACCCAGCCAAACTGTCATTCTAAA
65 GTCATGCCAAACTACCCAGCCAAACTACCCTGC-AAA
* *
64134305 A-TTGATTGAATACAAAAGTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
*
64134369 TCATGCCAAACTACCAAGCCAAA
66 TCATGCCAAACTACCCAGCCAAA
64134392 ATTTTATTGA
Statistics
Matches: 2527, Mismatches: 428, Indels: 249
0.79 0.13 0.08
Matches are distributed among these distances:
83 2 0.00
84 5 0.00
85 3 0.00
86 5 0.00
87 30 0.01
88 68 0.03
89 55 0.02
90 21 0.01
91 4 0.00
93 5 0.00
94 4 0.00
95 1 0.00
96 5 0.00
97 2 0.00
98 2 0.00
99 39 0.02
100 931 0.37
101 1063 0.42
102 184 0.07
103 5 0.00
104 8 0.00
107 3 0.00
108 1 0.00
110 75 0.03
111 6 0.00
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (100 bp):
ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
TCATGCCAAACTACCCAGCCAAACTACCCTGCAAA
Found at i:64131450 original size:100 final size:100
Alignment explanation
Indices: 64131206--64135082 Score: 3673
Period size: 100 Copynumber: 39.0 Consensus size: 100
64131196 GGTGTCTACA
* * * * *
64131206 GCCAATATTTGATTGAATGTAAAATTAAAAAGACATTTCTATAAGCATTTAAATTGGGACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * *
64131271 GGACTGTCATGCCAAACTATCCAGCAAAACAACCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAAC-TCCCT
* * *
64131307 G-CAAATATTTGATTGAATGCAAAATTAAGAAGTCATTTCTATAAGCATTCAAATTGGGATGAAA
1 GCCAAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* *
64131371 TGGACTGTCATGCCAAAATA-CCAGCCAAACAGCCCT
65 TGGACTGTCATGCCAAACTACCCAGCCAAAC-TCCCT
* ** * * * *
64131407 GCTAATGTTTGATTGAATGAAAAATTAAGAAGCCATTGCTATAAGCATTCAAATTGGGACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * *
64131472 GGACTGTCATGCCAAACTACCCAGCCAAATTGTCTT
66 GGACTGTCATGCCAAACTACCCAGCCAAACT-CCCT
* *
64131508 GCCAAAA-TTGATTGAACGAAAAATTACGAAAAATTAAGAGGACATTTTTATAAGCATTCAAATT
1 GCCAAAATTTGATT----G---AA-T--GCAAAATTAAGAGGACATTTCTATAAGCATTCAAATT
*** * * * * *
64131572 TATACAAAAAGGACTGTCAAGCCAAACTACCAAGCCAAACTGTCCT
56 GGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACT-CCCT
* * * * * *
64131618 ACCAAAATTTGATTGAATGCAGAATTAAAATGACATTTCTATAAG-AGTTAAAATAT-GGATGAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAAT-TGGGACGAA
* * * **
64131681 ATGGACTATCATGCAAAACTACCCAGCCAAATTTCTCAA
64 ATGGACTGTCATGCCAAACTACCCAGCCAAA-CTC-CCT
* * * *
64131720 G-CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACGTTCAAATTGGTATGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * * *
64131784 GAACTGTCATGCCAAACTACCCAACAAAATTTGCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAA-CTCCCT
* * * * ** * *
64131820 GCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTCGACAAACATTCAAATTTTGAAGCAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * *
64131885 GGACTGTAATGTCAAACTACCCAACCAAACTTCCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAAC-TCCCT
* * * * * *
64131921 G-AAAAAATTGATTGAATACAAAATTAAGAAGGA-ATTTCTTTAAGCATTCAAATTTGGACGGAA
1 GCCAAAATTTGATTGAATGCAAAATTAAG-AGGACATTTCTATAAGCATTCAAATTGGGACGAAA
*
64131984 TGGACTGTCATGACAAACTACCCAGCCAAACTACCCT
65 TGGACTGTCATGCCAAACTACCCAGCCAAACT-CCCT
* * * * * *
64132021 G-CAAAAATTGATCGAACGCAAAATTAAAAGGACATTTCTATAAACATTCAAATTGGGACAAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * *
64132085 GGACTATCATG-CAGAACTACCAAGCGAAACTGCCCT
66 GGACTGTCATGCCA-AACTACCCAGCCAAACT-CCCT
* * * ** *
64132121 ACTAAAATTTGATTAAATGCAAAATTAAGATTACATTTCTATAAG-AGTTCAAATTTGGACGAAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAA
* * * * * *
64132185 TAGACTATCATGCCAAACTACCTAACCAAATTTCCCA
65 TGGACTGTCATGCCAAACTACCCAGCCAAA-CTCCCT
* * * *
64132222 GCCGAAATTTGATTGAATGCAAAATTGAAAAGGACATTTCTATAAACTTTCAAATTGGGACGAAA
1 GCCAAAATTTGATTGAATGCAAAATT-AAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* *
64132287 TGGACTATCATGCCAAACTACCCAGCCAAACTACCT
65 TGGACTGTCATGCCAAACTACCCAGCCAAACTCCCT
* * * * *
64132323 CGCCAAAATTTGATTGAATACAAAATTAAGAAGATATTTCTATAACCATTCAAATTGGGATGAAA
1 -GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* *
64132388 TAGACTGTCATGGCAAACTACCCAGCCAAACTACCCT
65 TGGACTGTCATGCCAAACTACCCAGCCAAACT-CCCT
* * * * *
64132425 GCCAAAA-TTGATTAAATGTAAAATTAAGAGGACATTTCTATAAGCATTAAAATTTGGACGGAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
*
64132489 GGACTGTCATGACAAACTACCCAGCCAAACTACCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAACT-CCCT
* * * * * *
64132525 G-CAAAAATTGATCGAACGCAAAATTAAAAGGACATTTCTATAAACATTCAAATTGGGACAAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * *
64132589 GGACTATCATG-CAGAACTACCAAGCGAAACTGCCCT
66 GGACTGTCATGCCA-AACTACCCAGCCAAACT-CCCT
* * * ** *
64132625 ACTAAAATTTGATTAAATGCAAAATTAAGATTACATTTCTATAAG-AGTTCAAATTTGGACGAAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAA
* * * * * *
64132689 TAGACTATCATGCCAAACTACCTAACCAAATTTCCCA
65 TGGACTGTCATGCCAAACTACCCAGCCAAA-CTCCCT
* * * *
64132726 GCCGAAATTTGATTGAATGCAAAATTGAAAAGGACATTTCTATAAACTTTCAAATTGGGACGAAA
1 GCCAAAATTTGATTGAATGCAAAATT-AAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
*
64132791 TGGACTATCATGCCAAACTACCCAGCCAAACCTCCCT
65 TGGACTGTCATGCCAAACTACCCAGCCAAA-CTCCCT
* ** *
64132828 GCCAAAA-TTGATTGAATACAAAATTAAGATAACATTTCTATAAGCATTCAAATTGGGACAAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * * *
64132892 GGACTATGATGCCAAACT-TCCATGCCAAATTTCCT
66 GGACTGTCATGCCAAACTACCCA-GCCAAACTCCCT
* * *
64132927 AGCCAAAATTTGATTGAATGCAAAATTGAA-AGGACATTT-TGATAAACTTTCAAATTGGGACAA
1 -GCCAAAATTTGATTGAATGCAAAATT-AAGAGGACATTTCT-ATAAGCATTCAAATTGGGACGA
* * * * *
64132990 AATGGACTATCTTGTCAAACTACCCAGCCAAACCTACTT
63 AATGGACTGTCATGCCAAACTACCCAGCCAAA-CTCCCT
* * ** * * *
64133029 ACCAAAA-TAGATTGAATGCAAAATTAAGACAACATTTCTATAAGCAATC-AACTGGGAATGAAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGG-ACGAAA
* ** * * *
64133092 TGAAAAGTGATGCCAAACTACACAGCCAAACTGCCTT
65 TGGACTGTCATGCCAAACTACCCAGCCAAACT-CCCT
* * * *
64133129 GCCAATATTTGATTGAGTGCACAATTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * **
64133194 GGACTGTCATGCCAAGCTACCAAGCCAAACTACGTT
66 GGACTGTCATGCCAAACTACCCAGCCAAACT-CCCT
* * * * * **
64133230 ACCAAGATTTGATTGAATGCAAAATTAAGTGAACATTTCTATAAGCATTCAAAATGGGATAAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
*
64133295 GAACTGTCATGCCAAACT----------A--CCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAACTCCCT
* * * * *
64133318 GCCAAAATTTGAGTGAATGAAAAATTAAGAGGGCATTTCTATGAA-CATTCAAATTAGAACGAAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT-AAGCATTCAAATTGGGACGAAA
** *
64133382 TGGTTTGTAATGCCAAACT----A--C---CT---T
65 TGGACTGTCATGCCAAACTACCCAGCCAAACTCCCT
* * * * *
64133406 GCAAAAATTT-ATTTAATGCAAAATTAAGAAGACAATTCTATAGGCATTCAAATTGGGAC-AGAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA-AA
* * * * * *
64133469 TAGACTATCATGCCAAATTATCAAGCCAAACTGCCTT
65 TGGACTGTCATGCCAAACTACCCAGCCAAACT-CCCT
* * * *
64133506 GACAAAATTTTATTGAATGCAAAATTAAAAGGACATTTCTATAAG-AGTTCAAATTGGGATGAAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAA
* * * * *
64133570 TGGATTGTTATGCCAAACTACCCAACCAAATTGCTCT
65 TGGACTGTCATGCCAAACTACCCAGCCAAACT-CCCT
* * * * * **
64133607 AG--AATAATTTGATTCAATACAAAATTAAGAGGATATTTTTATAAACATTCAAATTAAGACG-A
1 -GCCAA-AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAA
* * *
64133669 A---A-TG--A----AAACTATCCAGGCAAACTGTCCT
64 ATGGACTGTCATGCCAAACTACCCAGCCAAACT-CCCT
* * * * *
64133697 GCCAAAA-TTGATTGAATGCAAAATTAATAAGACATTTTTATAAGCATTCAAATTAGGATGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * **
64133761 AGACCGTCATACCAAACTACCCAGCCAAACTACTTT
66 GGACTGTCATGCCAAACTACCCAGCCAAACT-CCCT
* * *
64133797 GTCAAAATTTTATTGAATGCAAAATTAAGAGGACATTTCTATAAG-AGTTCAAATTGGGATGAAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAA
* * *
64133861 TGGGCTATCATGCCAAACTACCCAGCCAAACTACCT
65 TGGACTGTCATGCCAAACTACCCAGCCAAACTCCCT
* * * * *
64133897 CGCCAAAATTTGATTGAATACAAAATTAAGAAGATATTTCTATAACCATTCAAATTGGGATGAAA
1 -GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* *
64133962 TAGACTGTCATGGCAAACTACCCAGCCAAACTACCCT
65 TGGACTGTCATGCCAAACTACCCAGCCAAACT-CCCT
* * * *
64133999 GCCAAAA-TTGATTAAATGTAAAATTAAGAGGACATTTCTATAAGCATTAAAATTGGGATGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* *
64134063 GGACTATCATGGCAAACTACCCAGCCAAACTACCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAACT-CCCT
* * * *
64134099 GCCAAAA-TTGATTAAATGTAAAATTAAGAGGACATTTCTATAAGCATTAAAATTGGGATGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* *
64134163 GGACTATCATGGCAAACTACCCAGCCAAACTACCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAACT-CCCT
* * * *
64134199 GCCAAAA-TTGATTAAATGCAAAATTAAGAGGACATTTCGATAAGCGTTAAAATTGGGACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * *
64134263 GGA-TGGTCATGTCAAACTACCCAGCCAAACTGTCAT
66 GGACT-GTCATGCCAAACTACCCAGCCAAACT-CCCT
* * * *
64134299 TCTAAAA-TTGATTGAATACAAAAGTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
64134363 GGACTGTCATGCCAAACT----A-CC-AA------
66 GGACTGTCATGCCAAACTACCCAGCCAAACTCCCT
* * * *
64134386 GCCAAAATTTTATTGAATGTAAAATTAAGAGGACATTTCTATAAG-AGTTCAAATTGGCACAAAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAA
* * * * * * **
64134450 TGGACAGTCATTCTAGAA-TTCCCATCCAAATTTATCT
65 TGGACTGTCATGCCA-AACTACCCAGCCAAA-CTCCCT
* * * * *
64134487 GCCAAAATTTAATTGAATGCAAAATTAAGAGGACATTTCGATAAACATTCAAATTGAGAAGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * *
64134552 GGACTGTCATTCCAAACTACCTAGCCAAACTTTCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAAC-TCCCT
* * * * **
64134588 -ACAAAAATTGATTGAATGCAAAATTAAGAGGACATTTCAATAACCATTCAAATTGGGAATAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
*
64134652 GGACTGTCATGCCAAACTACCAAGCCAAACTTCCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAAC-TCCCT
* * ** * *
64134688 G-CAAAAATTGATTAAATAAAAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGTACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
*
64134752 GGACTGTCATGCGAAACTACCCAGCCAAACTTCCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAAC-TCCCT
* * * *
64134788 G-CAAAAATTGATTAAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
*
64134852 GGACTGTCATGCGAAACTACCCAGCCAAACTTCCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAAC-TCCCT
* * * *
64134888 G-CAAAAATTGATTAAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
*
64134952 GGACTGTCATGCGAAACTACCCAGCCAAACTTCCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAAC-TCCCT
* * * *
64134988 G-CAAAAATTGATTAAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
*
64135052 GGACTGTCATGCGAAACTACCCAGCCAAACT
66 GGACTGTCATGCCAAACTACCCAGCCAAACT
64135083 ATCTTGCCAA
Statistics
Matches: 3171, Mismatches: 483, Indels: 246
0.81 0.12 0.06
Matches are distributed among these distances:
86 2 0.00
87 59 0.02
88 137 0.04
89 50 0.02
90 21 0.01
91 4 0.00
92 1 0.00
93 4 0.00
94 6 0.00
95 2 0.00
96 6 0.00
97 1 0.00
99 33 0.01
100 1400 0.44
101 1171 0.37
102 184 0.06
103 1 0.00
104 3 0.00
107 3 0.00
108 1 0.00
110 76 0.02
111 6 0.00
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (100 bp):
GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
GGACTGTCATGCCAAACTACCCAGCCAAACTCCCT
Found at i:64131468 original size:201 final size:201
Alignment explanation
Indices: 64131206--64135092 Score: 3608
Period size: 201 Copynumber: 19.5 Consensus size: 201
64131196 GGTGTCTACA
* * * * *
64131206 GCCAATATTTGATTGAATGTAAAATTAAAAAGACATTTCTATAAGCATTTAAATTGGGACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * *
64131271 GGACTGTCATGCCAAACTATCCAGCAAAACAACCCTG-CAAATATTTGATTGAATGCAAAATTAA
66 GGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAA-ATTTGATTGAATGCAAAATTAA
* * * *
64131335 GAAGTCATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAAATA-CCAGCCAA
130 GAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAA
64131399 ACAGCCCT
195 ACA-CCCT
* ** * * * *
64131407 GCTAATGTTTGATTGAATGAAAAATTAAGAAGCCATTGCTATAAGCATTCAAATTGGGACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* ** *
64131472 GGACTGTCATGCCAAACTACCCAGCCAAATTGTCTTGCCAAAA-TTGATTGAACGAAAAATTACG
66 GGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAATTTGATT----G---AA-T--G
* * *** * * *
64131536 AAAAATTAAGAGGACATTTTTATAAGCATTCAAATTTATACAAAAAGGACTGTCAAGCCAAACTA
121 CAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTA
* **
64131601 CCAAGCCAAACTGTCCT
186 CCCAGCCAAAC-ACCCT
* * * * * *
64131618 ACCAAAATTTGATTGAATGCAGAATTAAAATGACATTTCTATAAG-AGTTAAAATAT-GGATGAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAAT-TGGGACGAA
* * * * **
64131681 ATGGACTATCATGCAAAACTACCCAGCCAAATTTCTCAAG-CAAAATTTGATTGAATGCAAAATT
64 ATGGACTGTCATGCCAAACTACCCAGCCAAACTAC-CCTGCCAAAATTTGATTGAATGCAAAATT
* * * * * * *
64131745 AAGAGGACATTTCTATAAACGTTCAAATTGGTATGAAATGAACTGTCATGCCAAACTACCCAACA
128 AAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCC
***
64131810 AAATTTGCCT
193 AAA-CACCCT
* * * * ** * *
64131820 GCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTCGACAAACATTCAAATTTTGAAGCAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * * * * *
64131885 GGACTGTAATGTCAAACTACCCAACCAAACTTCCCTG-AAAAAATTGATTGAATACAAAATTAAG
66 GGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAG
* * * *
64131949 AAGGA-ATTTCTTTAAGCATTCAAATTTGGACGGAATGGACTGTCATGACAAACTACCCAGCCAA
131 -AGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAA
64132013 ACTACCCT
195 AC-ACCCT
* * * * * *
64132021 G-CAAAAATTGATCGAACGCAAAATTAAAAGGACATTTCTATAAACATTCAAATTGGGACAAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * * * * *
64132085 GGACTATCATG-CAGAACTACCAAGCGAAACTGCCCTACTAAAATTTGATTAAATGCAAAATTAA
66 GGACTGTCATGCCA-AACTACCCAGCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAA
** * * * * *
64132149 GATTACATTTCTATAAG-AGTTCAAATTTGGACGAAATAGACTATCATGCCAAACTACCTAACCA
130 GAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
** *
64132213 AATTTCCCA
194 AA-CACCCT
* * * *
64132222 GCCGAAATTTGATTGAATGCAAAATTGAAAAGGACATTTCTATAAACTTTCAAATTGGGACGAAA
1 GCCAAAATTTGATTGAATGCAAAATT-AAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAA
* *
64132287 TGGACTATCATGCCAAACTACCCAGCCAAACTA-CCTCGCCAAAATTTGATTGAATACAAAATTA
65 TGGACTGTCATGCCAAACTACCCAGCCAAACTACCCT-GCCAAAATTTGATTGAATGCAAAATTA
* * * * * *
64132351 AGAAGATATTTCTATAACCATTCAAATTGGGATGAAATAGACTGTCATGGCAAACTACCCAGCCA
129 AGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
64132416 AACTACCCT
194 AAC-ACCCT
* * * * *
64132425 GCCAAAA-TTGATTAAATGTAAAATTAAGAGGACATTTCTATAAGCATTAAAATTTGGACGGAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * * *
64132489 GGACTGTCATGACAAACTACCCAGCCAAACTACCCTG-CAAAAATTGATCGAACGCAAAATTAAA
66 GGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAG
* * * * *
64132553 AGGACATTTCTATAAACATTCAAATTGGGACAAAATGGACTATCATG-CAGAACTACCAAGCGAA
131 AGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCA-AACTACCCAGCCAA
*
64132617 ACTGCCCT
195 AC-ACCCT
* * * ** *
64132625 ACTAAAATTTGATTAAATGCAAAATTAAGATTACATTTCTATAAG-AGTTCAAATTTGGACGAAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAA
* * * * * * * *
64132689 TAGACTATCATGCCAAACTACCTAACCAAATTTCCCAGCCGAAATTTGATTGAATGCAAAATTGA
65 TGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATT-A
* * * *
64132754 AAAGGACATTTCTATAAACTTTCAAATTGGGACGAAATGGACTATCATGCCAAACTACCCAGCCA
129 AGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
*
64132819 AACCTCCCT
194 AA-CACCCT
* ** *
64132828 GCCAAAA-TTGATTGAATACAAAATTAAGATAACATTTCTATAAGCATTCAAATTGGGACAAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * **
64132892 GGACTATGATGCCAAACT-TCCATGCCAAA-TTTCCTAGCCAAAATTTGATTGAATGCAAAATTG
66 GGACTGTCATGCCAAACTACCCA-GCCAAACTACCCT-GCCAAAATTTGATTGAATGCAAAATT-
* * * * * *
64132955 AA-AGGACATTT-TGATAAACTTTCAAATTGGGACAAAATGGACTATCTTGTCAAACTACCCAGC
128 AAGAGGACATTTCT-ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGC
*
64133018 CAAAC-CTACTT
192 CAAACAC--CCT
* * ** * * *
64133029 ACCAAAA-TAGATTGAATGCAAAATTAAGACAACATTTCTATAAGCAATC-AACTGGGAATGAAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGG-ACGAAA
* ** * * * * * * *
64133092 TGAAAAGTGATGCCAAACTACACAGCCAAACTGCCTTGCCAATATTTGATTGAGTGCACAATTAA
65 TGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAA
* * *
64133157 GAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCAAGCTACCAAGCCAA
130 GAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAA
**
64133222 ACTACGTT
195 AC-ACCCT
* * * * * **
64133230 ACCAAGATTTGATTGAATGCAAAATTAAGTGAACATTTCTATAAGCATTCAAAATGGGATAAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * *
64133295 GAACTG---T--C--A-T-----GCCAAACTACCCTGCCAAAATTTGAGTGAATGAAAAATTAAG
66 GGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAG
* * * *
64133347 AGGGCATTTCTATGAA-CATTCAAATTAGAACGAAATGG--T-T--TG--TAA-T-----GCCAA
131 AGGACATTTCTAT-AAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAA
*
64133398 ACTACCTT
195 AC-ACCCT
* * * * *
64133406 GCAAAAATTT-ATTTAATGCAAAATTAAGAAGACAATTCTATAGGCATTCAAATTGGGAC-AGAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA-AA
* * * * * * * * *
64133469 TAGACTATCATGCCAAATTATCAAGCCAAACTGCCTTGACAAAATTTTATTGAATGCAAAATTAA
65 TGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAA
* * * * *
64133534 AAGGACATTTCTATAAG-AGTTCAAATTGGGATGAAATGGATTGTTATGCCAAACTACCCAACCA
130 GAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
** *
64133598 AATTGCTCT
194 AA-CACCCT
* * * * * **
64133607 AG--AATAATTTGATTCAATACAAAATTAAGAGGATATTTTTATAAACATTCAAATTAAGACG-A
1 -GCCAA-AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAA
* * **
64133669 A---A-TG--A----AAACTATCCAGGCAAACTGTCCTGCCAAAA-TTGATTGAATGCAAAATTA
64 ATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTA
* * * * * * * *
64133723 ATAAGACATTTTTATAAGCATTCAAATTAGGATGAAATAGACCGTCATACCAAACTACCCAGCCA
129 AGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
**
64133788 AACTACTTT
194 AAC-ACCCT
* * *
64133797 GTCAAAATTTTATTGAATGCAAAATTAAGAGGACATTTCTATAAG-AGTTCAAATTGGGATGAAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAA
* * *
64133861 TGGGCTATCATGCCAAACTACCCAGCCAAACTA-CCTCGCCAAAATTTGATTGAATACAAAATTA
65 TGGACTGTCATGCCAAACTACCCAGCCAAACTACCCT-GCCAAAATTTGATTGAATGCAAAATTA
* * * * * *
64133925 AGAAGATATTTCTATAACCATTCAAATTGGGATGAAATAGACTGTCATGGCAAACTACCCAGCCA
129 AGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
64133990 AACTACCCT
194 AAC-ACCCT
* * * *
64133999 GCCAAAA-TTGATTAAATGTAAAATTAAGAGGACATTTCTATAAGCATTAAAATTGGGATGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * *
64134063 GGACTATCATGGCAAACTACCCAGCCAAACTACCCTGCCAAAA-TTGATTAAATGTAAAATTAAG
66 GGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAG
* * * *
64134127 AGGACATTTCTATAAGCATTAAAATTGGGATGAAATGGACTATCATGGCAAACTACCCAGCCAAA
131 AGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA
64134192 CTACCCT
196 C-ACCCT
* * * *
64134199 GCCAAAA-TTGATTAAATGCAAAATTAAGAGGACATTTCGATAAGCGTTAAAATTGGGACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* ** * * * * *
64134263 GGA-TGGTCATGTCAAACTACCCAGCCAAACTGTCATTCTAAAA-TTGATTGAATACAAAAGTAA
66 GGACT-GTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAA
64134326 GAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACT----A-CC--
130 GAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAA
64134384 A-A----
195 ACACCCT
* * * *
64134386 GCCAAAATTTTATTGAATGTAAAATTAAGAGGACATTTCTATAAG-AGTTCAAATTGGCACAAAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAA
* * * * * * * *
64134450 TGGACAGTCATTCTAGAA-TTCCCATCCAAATTTA-TCTGCCAAAATTTAATTGAATGCAAAATT
65 TGGACTGTCATGCCA-AACTACCCAGCCAAA-CTACCCTGCCAAAATTTGATTGAATGCAAAATT
* * * * * *
64134513 AAGAGGACATTTCGATAAACATTCAAATTGAGAAGAAATGGACTGTCATTCCAAACTACCTAGCC
128 AAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCC
**
64134578 AAACTTTCCT
193 AAAC-ACCCT
* * * * **
64134588 -ACAAAAATTGATTGAATGCAAAATTAAGAGGACATTTCAATAACCATTCAAATTGGGAATAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * * **
64134652 GGACTGTCATGCCAAACTACCAAGCCAAACTTCCCTG-CAAAAATTGATTAAATAAAAAATTAAG
66 GGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAG
* * *
64134716 AGGACATTTTTATAAGCATTCAAATTGGTACGAAATGGACTGTCATGCGAAACTACCCAGCCAAA
131 AGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA
*
64134781 CTTCCCT
196 C-ACCCT
* * * *
64134788 G-CAAAAATTGATTAAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * * *
64134852 GGACTGTCATGCGAAACTACCCAGCCAAACTTCCCTG-CAAAAATTGATTAAATACAAAATTAAG
66 GGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAG
* *
64134916 AGGACATTTCTATAAGCATTCAAATTGGTACGAAATGGACTGTCATGCGAAACTACCCAGCCAAA
131 AGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA
*
64134981 CTTCCCT
196 C-ACCCT
* * * *
64134988 G-CAAAAATTGATTAAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * *
64135052 GGACTGTCATGCGAAACTACCCAGCCAAACTATCTTGCCAA
66 GGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
64135093 TGTCATAACG
Statistics
Matches: 3071, Mismatches: 479, Indels: 272
0.80 0.13 0.07
Matches are distributed among these distances:
174 1 0.00
175 47 0.02
176 19 0.01
178 1 0.00
180 1 0.00
181 1 0.00
182 2 0.00
183 1 0.00
184 2 0.00
186 1 0.00
187 11 0.00
188 137 0.04
189 139 0.05
190 124 0.04
191 31 0.01
193 4 0.00
194 3 0.00
195 7 0.00
196 3 0.00
197 3 0.00
198 1 0.00
199 7 0.00
200 807 0.26
201 819 0.27
202 497 0.16
203 229 0.07
204 8 0.00
205 2 0.00
207 2 0.00
208 2 0.00
210 55 0.02
211 95 0.03
212 9 0.00
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (201 bp):
GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
GGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAG
AGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA
CACCCT
Found at i:64131623 original size:110 final size:111
Alignment explanation
Indices: 64131425--64131634 Score: 287
Period size: 110 Copynumber: 1.9 Consensus size: 111
64131415 TTGATTGAAT
* * * * *
64131425 GAAAAATTAAGAAGCCATTGCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACT
1 GAAAAATTAAGAAGACATTGCTATAAGCATTCAAATTGAGACAAAAAGGACTGTCAAGCCAAACT
* * * *
64131490 ACCCAGCCAAATTGTCTTGCCAAAA-TTGATTGAACGAAAAATTAC
66 ACCAAGCCAAACTGTCCTACCAAAATTTGATTGAACGAAAAATTAC
* ** * *
64131535 GAAAAATTAAGAGGACATTTTTATAAGCATTCAAATTTATACAAAAAGGACTGTCAAGCCAAACT
1 GAAAAATTAAGAAGACATTGCTATAAGCATTCAAATTGAGACAAAAAGGACTGTCAAGCCAAACT
64131600 ACCAAGCCAAACTGTCCTACCAAAATTTGATTGAA
66 ACCAAGCCAAACTGTCCTACCAAAATTTGATTGAA
64131635 TGCAGAATTA
Statistics
Matches: 85, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
110 76 0.89
111 9 0.11
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (111 bp):
GAAAAATTAAGAAGACATTGCTATAAGCATTCAAATTGAGACAAAAAGGACTGTCAAGCCAAACT
ACCAAGCCAAACTGTCCTACCAAAATTTGATTGAACGAAAAATTAC
Found at i:64132419 original size:13 final size:13
Alignment explanation
Indices: 64132401--64132430 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
64132391 ACTGTCATGG
64132401 CAAACTACCCAGC
1 CAAACTACCCAGC
*
64132414 CAAACTACCCTGC
1 CAAACTACCCAGC
64132427 CAAA
1 CAAA
64132431 ATTGATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.43, G:0.07, T:0.10
Consensus pattern (13 bp):
CAAACTACCCAGC
Found at i:64133482 original size:87 final size:87
Alignment explanation
Indices: 64133217--64133485 Score: 249
Period size: 88 Copynumber: 3.1 Consensus size: 87
64133207 AAGCTACCAA
* * * * *
64133217 GCCAAACTACGTTACCAAGATTTGATTGAATGCAAAATTAAG-TGAACATTTCTATAAGCATTCA
1 GCCAAACTACCTTGCCAAAATTTGATTGAATGCAAAATTAAGAAG-ACATTTCTATAGGCATTCA
* * *
64133281 AAATGGGATAAAATGAACTGTCAT
65 AATTGGGACAGAATG-ACTGTCAT
* * * * * *
64133305 GCCAAACTACCCTGCCAAAATTTGAGTGAATGAAAAATTAAGAGGGCATTTCTAT-GAACATTCA
1 GCCAAACTACCTTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAG-GCATTCA
* * ** *
64133369 AATTAGAAC-GAAATGGTTTGTAAT
65 AATTGGGACAG-AAT-GACTGTCAT
* * *
64133393 GCCAAACTACCTTGCAAAAATTT-ATTTAATGCAAAATTAAGAAGACAATTCTATAGGCATTCAA
1 GCCAAACTACCTTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAGGCATTCAA
*
64133457 ATTGGGACAGAATAGACTATCAT
66 ATTGGGACAGAAT-GACTGTCAT
64133480 GCCAAA
1 GCCAAA
64133486 TTATCAAGCC
Statistics
Matches: 141, Mismatches: 34, Indels: 13
0.75 0.18 0.07
Matches are distributed among these distances:
87 52 0.37
88 87 0.62
89 2 0.01
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (87 bp):
GCCAAACTACCTTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAGGCATTCAA
ATTGGGACAGAATGACTGTCAT
Found at i:64133993 original size:13 final size:13
Alignment explanation
Indices: 64133975--64134004 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
64133965 ACTGTCATGG
64133975 CAAACTACCCAGC
1 CAAACTACCCAGC
*
64133988 CAAACTACCCTGC
1 CAAACTACCCAGC
64134001 CAAA
1 CAAA
64134005 ATTGATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.43, G:0.07, T:0.10
Consensus pattern (13 bp):
CAAACTACCCAGC
Found at i:64134091 original size:13 final size:13
Alignment explanation
Indices: 64134075--64134104 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
64134065 ACTATCATGG
64134075 CAAACTACCCAGC
1 CAAACTACCCAGC
*
64134088 CAAACTACCCTGC
1 CAAACTACCCAGC
64134101 CAAA
1 CAAA
64134105 ATTGATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.43, G:0.07, T:0.10
Consensus pattern (13 bp):
CAAACTACCCAGC
Found at i:64134191 original size:13 final size:13
Alignment explanation
Indices: 64134175--64134204 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
64134165 ACTATCATGG
64134175 CAAACTACCCAGC
1 CAAACTACCCAGC
*
64134188 CAAACTACCCTGC
1 CAAACTACCCAGC
64134201 CAAA
1 CAAA
64134205 ATTGATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.43, G:0.07, T:0.10
Consensus pattern (13 bp):
CAAACTACCCAGC
Found at i:64136181 original size:42 final size:42
Alignment explanation
Indices: 64136118--64136278 Score: 144
Period size: 42 Copynumber: 3.7 Consensus size: 42
64136108 CGTTTTCTCA
** * *
64136118 ATGCCATAGTTCAACTATGGTCTTACACATCTTAACATAATG
1 ATGCCATAGCCCAGCTATGGTCTTACACATATTAACATAATG
* * * *
64136160 ATGTCATAGCCCAGCTATGGTCTTACACATATTCATATATTG
1 ATGCCATAGCCCAGCTATGGTCTTACACATATTAACATAATG
* * *
64136202 ATGCCATAGCCCAGATATGGTCTTACACGTAATCACATATCACAT-ATCA
1 ATGCCATAGCCCAGCTATGGTCTTACAC---AT---AT-TAACATAAT-G
64136251 ATGCCATAGCCCAGCTATGGTCTTACAC
1 ATGCCATAGCCCAGCTATGGTCTTACAC
64136279 GAATCACATA
Statistics
Matches: 97, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
42 60 0.62
45 2 0.02
48 3 0.03
49 32 0.33
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAGCTATGGTCTTACACATATTAACATAATG
Found at i:64136317 original size:46 final size:45
Alignment explanation
Indices: 64136157--64136366 Score: 157
Period size: 45 Copynumber: 4.6 Consensus size: 45
64136147 TCTTAACATA
* * * *
64136157 ATGATGTCATAGCCCAGCTATGGTCTTACAC-ATATTCAT-AT-A-
1 ATGATGCCATATCCCAGATATGGTCTTACACAATA-GCATGATCAC
* *
64136199 TTGATGCCATAGCCCAGATATGGTCTTACACGTAATCA-CAT-ATCAC
1 ATGATGCCATATCCCAGATATGGTCTTACAC--AAT-AGCATGATCAC
* * * *
64136245 ATATCAATGCCATAGCCCAGCTATGGTCTTACACGAATCA-CAT-ATCTC
1 --AT-GATGCCATATCCCAGATATGGTCTTACAC-AAT-AGCATGATCAC
* * *
64136293 ACTGATGCCATATCACAGATATGGTCTTATACAGTAGCATGATCAC
1 A-TGATGCCATATCCCAGATATGGTCTTACACAATAGCATGATCAC
64136339 ATGATGCCATATCCCAGATATGGTCTTA
1 ATGATGCCATATCCCAGATATGGTCTTA
64136367 TACGGAAATC
Statistics
Matches: 140, Mismatches: 16, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
42 28 0.20
44 6 0.04
45 34 0.24
46 31 0.22
47 1 0.01
48 13 0.09
49 27 0.19
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (45 bp):
ATGATGCCATATCCCAGATATGGTCTTACACAATAGCATGATCAC
Found at i:64136423 original size:31 final size:31
Alignment explanation
Indices: 64136388--64136567 Score: 254
Period size: 31 Copynumber: 5.8 Consensus size: 31
64136378 CTTGTCACTT
*
64136388 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
64136419 GTAGCCGGAGCTACCACTTTTCACTTATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
64136450 GTAGCCAAAGCTACCA-TTATTTATTGATCAG
1 GTAGCCGAAGCTACCACTT-TTCACTGATCAG
* * *
64136481 GTAGCCGGAGCTACCATTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
64136512 GTAGCCGAAGCTATCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
64136543 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
64136568 TGTCATTTGT
Statistics
Matches: 129, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
30 2 0.02
31 125 0.97
32 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:64136646 original size:50 final size:50
Alignment explanation
Indices: 64136543--64136714 Score: 245
Period size: 50 Copynumber: 3.4 Consensus size: 50
64136533 CACTGATCAG
* * * *
64136543 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCTGAAGCTATCACTTATCACTT-TCACTTGTCCTTGATCAGATAAGT
*
64136594 GTAGCGGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCTGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
* * * * *
64136644 GTAGCTAAAGCTATTACTTATCATTTTCACTTATCCTTGATCAAATAAGT
1 GTAGCTGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
64136694 GTAGCTGAAGCTATCACTTAT
1 GTAGCTGAAGCTATCACTTAT
64136715 TACTAGTTGC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 86 0.79
51 23 0.21
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCTGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
Found at i:64140213 original size:82 final size:83
Alignment explanation
Indices: 64140116--64140280 Score: 305
Period size: 82 Copynumber: 2.0 Consensus size: 83
64140106 CTCTCTTATT
64140116 AAAAAAAATCGAAACTTTTTCCGAAATCAAACCTTTTTTTTTAAAACAAACCTTTATTTAAGAAG
1 AAAAAAAATCGAAACTTTTTCCGAAATCAAACCTTTTTTTTTAAAACAAACCTTTATTTAAGAAG
64140181 GTGGAAGGCAAAAAAAGG
66 GTGGAAGGCAAAAAAAGG
* *
64140199 AAAAAAAA-CGAAACTTTTTCCGAAATCAAATCTTTTTTTTTAAAAGAAACCTTTATTTAAGAAG
1 AAAAAAAATCGAAACTTTTTCCGAAATCAAACCTTTTTTTTTAAAACAAACCTTTATTTAAGAAG
64140263 GTGGAAGGCAAAAAAAGG
66 GTGGAAGGCAAAAAAAGG
64140281 GGCTTTTGGG
Statistics
Matches: 80, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
82 72 0.90
83 8 0.10
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.28
Consensus pattern (83 bp):
AAAAAAAATCGAAACTTTTTCCGAAATCAAACCTTTTTTTTTAAAACAAACCTTTATTTAAGAAG
GTGGAAGGCAAAAAAAGG
Found at i:64140474 original size:3 final size:3
Alignment explanation
Indices: 64140466--64140513 Score: 60
Period size: 3 Copynumber: 15.7 Consensus size: 3
64140456 AATGAAAAAG
* * *
64140466 ATA ATA ATA ATA TTTA ATA ATA ATA ATA ATA GTA ATG ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
64140512 AT
1 AT
64140514 TTGGGCCCTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
3 36 0.95
4 2 0.05
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:64140912 original size:100 final size:101
Alignment explanation
Indices: 64140667--64141815 Score: 1107
Period size: 101 Copynumber: 11.6 Consensus size: 101
64140657 GGTGTCTATA
* * * *
64140667 GCCAATATTTGATTGAATGCAAAATTAAAAAGACATTTTTATAAGCATTTAAATTGGGACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * * **
64140732 AGACTGTCATGACAAACTATCCAGCTAAACAACCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAACTTCCCT
* * *
64140768 G-CAAATATTTGATTAAATGCAAAATTAAGAAGTCATTTCTATAAGCATTCAAATTGGGACAAAA
1 GCCAAA-ATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAA
* * **
64140832 TAGACTGTCATGCCAAACTA-CCTGCCAAACAGCCCT
65 TGGACTGTCATGCCAAACTACCCAGCCAAACTTCCCT
* * *
64140868 GCCAATATTTGATTGAAAG-AAAGATTAAGAATACATTTCTATAAGCATTCAAATTGGGACGAAA
1 GCCAAAATTTGATTGAATGCAAA-ATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAA
* *
64140932 TGGACTGTCATGCCAAACTACCCAGCCAAATTTTCCT
65 TGGACTGTCATGCCAAACTACCCAGCCAAACTTCCCT
* * * * ***
64140969 TCCAAAA-TTGATTGAATGAAAAATTAATAGGACATTTCTATAAGCATTCAAATTTATACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAAT
64141033 GGAC--T-AT------C-A---AGCCAAACTGT-CCT
66 GGACTGTCATGCCAAACTACCCAGCCAAACT-TCCCT
* * * *
64141056 ACCAAAATTTGATTGAATGTAGAATTAA-AATGACATTTCTATAAG-AGTTCAAATAT-GGATGA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAA-GACATTTCTATAAGCA-TTCAAAT-TGGGACGA
* * * *
64141118 AATGGACTATCATGCAAAACTACCCAGCCAAATTTCCCA
63 AATGGACTGTCATGCCAAACTACCCAGCCAAACTTCCCT
* * * * *
64141157 GGCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAATTAGTACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * * *
64141222 GAACTGCCATGCCAAACTACCCAACAAAATTTCCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAACTTCCCT
* * * * ** * *
64141258 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCGACAAACATTCAAATTTTGAAGCAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * *
64141323 GGACTGTAATGTCAAACTACCCAACCAAACTTCCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAACTTCCCT
* * * * * *
64141359 G-AAAAAATTGATTGAATACAAAATTAAGAAGGA-ATTTCTTTAAGCATTCAAATTTGGACGGAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAA-GACATTTCTATAAGCATTCAAATTGGGACGAAA
* *
64141422 TGGACTGTCATGACAAACTACCCAGCCAAACTTCCTT
65 TGGACTGTCATGCCAAACTACCCAGCCAAACTTCCCT
* * * * * *
64141459 G-CAAAAATTGATCGAACGCAAAATTAAAAAGACATTTCTATAAACATTCAAATTGGGACAAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * *
64141523 GGACTATCATG-CAGAACTACCAAGCGAAACTGCCCT
66 GGACTGTCATGCCA-AACTACCCAGCCAAACTTCCCT
* * * ** *
64141559 ACTAAAATTTGATTAAATGCAAAATTAAGATTACATTTCTATAAG-AGTTCAAATTTGGACGAAA
1 GCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCA-TTCAAATTGGGACGAAA
* * * * * *
64141623 TAGACTATCATGCCAAACTACCTAACCAAATTTCCCA
65 TGGACTGTCATGCCAAACTACCCAGCCAAACTTCCCT
* * *
64141660 GCCAAAATTTGATTGAATGCAAAATTGAA-AGGACATTTC-ATTAAACTTTCAAATTGGGACGAA
1 GCCAAAATTTGATTGAATGCAAAATT-AAGAAGACATTTCTA-TAAGCATTCAAATTGGGACGAA
* * * * *
64141723 ATGAACTATCATGTCAAACTATCCAGCCAAACTTACCT
64 ATGGACTGTCATGCCAAACTACCCAGCCAAACTTCCCT
*
64141761 GCCAAAA-TTGATTGACTGCAAAATTAAG-AGAACATTTCTATAAGCATTCAAATTG
1 GCCAAAATTTGATTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTG
64141816 AAAATTGATT
Statistics
Matches: 866, Mismatches: 143, Indels: 79
0.80 0.13 0.07
Matches are distributed among these distances:
87 19 0.02
88 50 0.06
89 1 0.00
90 2 0.00
91 3 0.00
97 3 0.00
98 2 0.00
99 10 0.01
100 336 0.39
101 435 0.50
102 5 0.01
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (101 bp):
GCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAAT
GGACTGTCATGCCAAACTACCCAGCCAAACTTCCCT
Found at i:64141107 original size:88 final size:87
Alignment explanation
Indices: 64140955--64141138 Score: 226
Period size: 88 Copynumber: 2.1 Consensus size: 87
64140945 CAAACTACCC
* * * *
64140955 AGCCAAATTTTCCTTCCAAAATTGATTGAATGAAAAATTAATAGGACATTTCTATAAGCATTCAA
1 AGCCAAACTGTCCTACCAAAATTGATTGAATGAAAAATTAAAAGGACATTTCTATAAGCATTCAA
* *
64141020 ATTTATACGAAATGGACTATCA
66 ATATAGACGAAATGGACTATCA
* * *
64141042 AGCCAAACTGTCCTACCAAAATTTGATTGAATGTAGAATTAAAATGACATTTCTATAAG-AGTTC
1 AGCCAAACTGTCCTACCAAAA-TTGATTGAATGAAAAATTAAAAGGACATTTCTATAAGCA-TTC
* *
64141106 AAATATGGATGAAATGGACTATCA
64 AAATATAGACGAAATGGACTATCA
* *
64141130 TGCAAAACT
1 AGCCAAACT
64141139 ACCCAGCCAA
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
87 19 0.23
88 63 0.77
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (87 bp):
AGCCAAACTGTCCTACCAAAATTGATTGAATGAAAAATTAAAAGGACATTTCTATAAGCATTCAA
ATATAGACGAAATGGACTATCA
Found at i:64141842 original size:52 final size:52
Alignment explanation
Indices: 64141764--64141867 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
64141754 CTTACCTGCC
*
64141764 AAAATTGATTGACTGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTG
1 AAAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTG
64141816 AAAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTG
1 AAAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTG
64141868 GGACAAAATG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.31
Consensus pattern (52 bp):
AAAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTG
Found at i:64141993 original size:88 final size:87
Alignment explanation
Indices: 64141816--64141986 Score: 195
Period size: 88 Copynumber: 1.9 Consensus size: 87
64141806 ATTCAAATTG
*
64141816 AAAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGACAAAATGGAA
1 AAAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACAAAATGGAA
* * * *
64141881 TGTGATGCCAGATTTCCCAACC
66 TATCATGCCAAATATCCCAACC
* * *
64141903 AAAATTTGATTGAATGCAAAATTGAA-AGGACATTTC-ATTAAACTTTCAAATTGGGACGAAAT-
1 AAAA-TTGATTGAATGCAAAATT-AAGAGAACATTTCTA-TAAACATTCAAATTGGGACAAAATG
*
64141965 GAACTATCATGTCAAACTATCC
63 GAA-TATCATGCCAAA-TATCC
64141987 AGCCAAACTT
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
87 8 0.11
88 56 0.80
89 6 0.09
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.28
Consensus pattern (87 bp):
AAAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACAAAATGGAA
TATCATGCCAAATATCCCAACC
Found at i:64142268 original size:101 final size:98
Alignment explanation
Indices: 64141904--64143939 Score: 1532
Period size: 101 Copynumber: 20.7 Consensus size: 98
64141894 TTCCCAACCA
* * * *
64141904 AAATTTGATTGAATGCAAAATTGAA-AGGACATTTC-ATTAAACTTTCAAATTGGGACGAAATGA
1 AAATTTGATTGAATGCAAAATT-AAGAGGACATTTCTA-TAAGCATTCAAATTGGGATGAAATGG
* * *
64141967 ACTATCATGTCAAACTATCCAGCCAAACTTACCTGCC
64 ACTGTCATGCCAAACTA-CCAGCCAAAC-TCCCTGCC
* * * *
64142004 AAAATTGATTGACTGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGATGAAATGAAC
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGAC
* * * *
64142069 TATAAGGCCAAACTACACAGCCAAACTACCCTGTC
66 TGTCATGCCAAACTAC-CAGCCAAACT-CCCTGCC
* * * *
64142104 AATATTTTGATTGAATGCACAAGTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAATGG
1 AA-A-TTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGG
* * * *
64142169 ATTGTAATGTCAAACTACCAAGCCAAACTAACCTGCC
64 ACTGTCATGCCAAACTACC-AGCCAAACT-CCCTGCC
* * * *
64142206 AATATTTGATTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAAATGGGATAAAATGAA
1 AA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGA
* * * *
64142271 TTGTCACGCCAAACT---A-CC---CT-AC--CA
65 CTGTCATGCCAAACTACCAGCCAAACTCCCTGCC
* * * ** *
64142295 AAATTTGATTGAACGCAAAATTAAGAGGACATTTCTATAAACATTTAAATTGATATGAAATGAAC
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGAC
* * *
64142360 TATCATACCAAACTACCCAGCCAAACTGCTCTGCC
66 TGTCATGCCAAACTA-CCAGCCAAACT-CCCTGCC
* * * * * * *
64142395 AAAATTGATTGAACGTAAAATTAAGAGGACATTTTTATAAGCATTAAAATTGGAATGAAATAGAC
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGAC
* * *
64142460 TGTCACGCCAAACTATCCAACCAAACTGCCTTGCC
66 TGTCATGCCAAACTA-CCAGCCAAACT-CCCTGCC
* * * *
64142495 AAAATTTGATTAAATGCAAAATTAAGAGGACATTTCTGTAAACATTCAAATTGGGACGAAATGGA
1 -AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGA
** * ** *
64142560 CTGTCATGGAAAATTACCCAGTGAAACTACCTGGCC
65 CTGTCATGCCAAACTA-CCAGCCAAACTCCCT-GCC
* * * *
64142596 AAAATTGATTGAATGCAAAATTAAGAGGTCATTTCTTTAAGCATTCAAATTGGGACGAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGAC
* * * * *
64142661 -GATCATGTCAAACTATCCAGCTAAACTATCATGCT
66 TG-TCATGCCAAACTA-CCAGCCAAACT-CCCTGCC
* * * ** *
64142696 AAAATTAATTGAATGCAAAATGAAGATAACATTTCTATAAGCATTCCAATTGGGA-GAAAATGGA
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATG-AAATGGA
* ** * *
64142760 CTATCATGAAAAACTACCCAGCCAAACTACCTTGGC
65 CTGTCATGCCAAACTA-CCAGCCAAACT-CCCTGCC
* * * * * * *
64142796 AAAATTGATCGAACGCAAAATTCAGAGGACATTTCTAAAAGCATTCAGATTGGAACT-AAATGG-
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGA-TGAAATGGA
* * * *
64142859 TTATCATGACAAACTA-C--CC-AA----CT--A
65 CTGTCATGCCAAACTACCAGCCAAACTCCCTGCC
* * * * **
64142883 AAATTTGACTGAATGCAAAATTAAGTGGACATTT-TGATAAACATTAAAATTGGGACAAAATGGA
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCT-ATAAGCATTCAAATTGGGATGAAATGGA
* * * * * **
64142947 CAGTCATGCCAAAATACCCAGCTAAATTTCCATGTAG
65 CTGTCATGCCAAACTA-CCAGCCAAA-CTCCCTG-CC
* * * * *
64142984 AAATTTGATTTAATACAAAATTAAGAGGACATTTATATAAACATTCAAATTGGAATGAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGAC
* ** *
64143049 TATCATGCCAAACTATCCAGCCAAACTTCATTTCC
66 TGTCATGCCAAACTA-CCAGCCAAAC-TCCCTGCC
* * * * *
64143084 AAAATTAATTGAATGCAAAATCAAGAGGACATTTCTATAGGCATTC-AATT-TGATTCGAAATGG
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGA-T-GAAATGG
* * *
64143147 ACAGTCATGTCAAACTACCCAGCCAAATTGCCCTGCC
64 ACTGTCATGCCAAACTA-CCAGCCAAACT-CCCTGCC
* * * * * ** *
64143184 AATATTTGATTTAATGTAAAATTAAGAGGATATTTCTTTAAGCAATCAAATTCAGATGAAATAGA
1 AA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGA
* * * *
64143249 TTGTCATGCCAAAGTTCCAAGCTAAACTACCCTGCC
65 CTGTCATGCCAAACTACC-AGCCAAACT-CCCTGCC
* ** * * *
64143285 AATATTTGACTGAATGCAAAATTAAGAGGACATAACTATAAGCATTCAAATTGAGATAAAATTGA
1 AA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGA
*
64143350 CTGTCATGCCAAACT----G------T-CCTACC
65 CTGTCATGCCAAACTACCAGCCAAACTCCCTGCC
* * * * * * *
64143373 AAAATTTGATTGAATGCATAATTAAAATGACATTTCTATAAACATTCAAATTGGTACGAAATCGA
1 -AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGA
* * * *** *
64143438 CTGTCATGTCAAACTACTCAACAAAACTGGTATGCT
65 CTGTCATGCCAAACTAC-CAGCCAAACT-CCCTGCC
* * * * *
64143474 AAAATT-ATTGAATGCAAAATTAAGAGCACATTTTTATAAGCATTAAAATTGGGAAGAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGAC
* * *
64143538 T-ACATTGCTAAACTACCCAGCCAAACTGCCCTGCA
66 TGTCA-TGCCAAACTA-CCAGCCAAACT-CCCTGCC
* * * * * *
64143573 AAAATAGATTGAATGCAAAATTAAGAGGACATTTTTGTAAGCATTAAAATTGGGACGAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGAC
* *
64143638 TATCATGCCAAACTATCCAGCCAAACTGCCCTACC
66 TGTCATGCCAAACTA-CCAGCCAAACT-CCCTGCC
* * **
64143673 AAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAGATTGGGACAAAATGGA
1 -AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGA
* * *
64143738 TTGTCTTGCAAAACTACCTTA-CCAAACTACCCTGCC
65 CTGTCATGCCAAACTACC--AGCCAAACT-CCCTGCC
* * * * *
64143774 AGAATTTGATTGAATGCAAAATTAAGAGGACAGTTCAAT-AGACACTCAAATTGGGACGAAATGT
1 A-AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAG-CATTCAAATTGGGATGAAATGG
* * *
64143838 ACTATCATGCCAAACTACCTAGCCAAACTGCCTTGCTA
64 ACTGTCATGCCAAACTACC-AGCCAAACT-CCCTGC-C
* * * * * * *
64143876 AAATTTGATTGAATACAAAATTAATAAGACATTTCAATAAACATTAAAATTGAGATGAAATGGA
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGA
64143940 GAATACAAAA
Statistics
Matches: 1549, Mismatches: 309, Indels: 155
0.77 0.15 0.08
Matches are distributed among these distances:
86 1 0.00
87 48 0.03
88 145 0.09
89 6 0.00
90 2 0.00
91 1 0.00
92 2 0.00
93 6 0.00
94 2 0.00
95 2 0.00
96 5 0.00
97 2 0.00
98 5 0.00
99 101 0.07
100 552 0.36
101 573 0.37
102 94 0.06
103 2 0.00
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (98 bp):
AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGAC
TGTCATGCCAAACTACCAGCCAAACTCCCTGCC
Found at i:64142356 original size:88 final size:88
Alignment explanation
Indices: 64142181--64142377 Score: 241
Period size: 88 Copynumber: 2.2 Consensus size: 88
64142171 TGTAATGTCA
* * * * * *
64142181 AACTACCAAGCCAAACTAACCTGCCAATATTTGATTGAATACAAAATTAAGAGGACATTTCTATA
1 AACTATCACGCCAAACTACCCTACCAAAATTTGATTGAACACAAAATTAAGAGGACATTTCTATA
* *
64142246 AGCATTCAAAATGGGATAAAATG
66 AACATTCAAAATGAGATAAAATG
* * *
64142269 AATTGTCACGCCAAACTACCCTACCAAAATTTGATTGAACGCAAAATTAAGAGGACATTTCTATA
1 AACTATCACGCCAAACTACCCTACCAAAATTTGATTGAACACAAAATTAAGAGGACATTTCTATA
* * * *
64142334 AACATTTAAATTGATATGAAATG
66 AACATTCAAAATGAGATAAAATG
**
64142357 AACTATCATACCAAACTACCC
1 AACTATCACGCCAAACTACCC
64142378 AGCCAAACTG
Statistics
Matches: 90, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
88 90 1.00
ACGTcount: A:0.43, C:0.19, G:0.12, T:0.26
Consensus pattern (88 bp):
AACTATCACGCCAAACTACCCTACCAAAATTTGATTGAACACAAAATTAAGAGGACATTTCTATA
AACATTCAAAATGAGATAAAATG
Found at i:64142639 original size:201 final size:200
Alignment explanation
Indices: 64141901--64143939 Score: 1680
Period size: 201 Copynumber: 10.3 Consensus size: 200
64141891 GATTTCCCAA
* *
64141901 CCAAAATTTGATTGAATGCAAAATTGAA-AGGACATTTC-ATTAAACTTTCAAATTGGGACGAAA
1 CCAAAATTTGATTGAATGCAAAATT-AAGAGGACATTTCTA-TAAGCATTCAAATTGGGACGAAA
* * * *
64141964 TGAACTATCATGTC-AAACTATCCAGCCAAACTTACCTGCCAAAATTGATTGACTGCAAAATTAA
64 TGGACTGTCATG-CAAAACTACCCAGCCAAAC-TACCTGCCAAAATTGATTGAATGCAAAATTAA
* * * * * *
64142028 GAGAACATTTCTATAAGCATTCAAATTGGGATGAAATGAACTATAAGGCCAAACTA-CACAGCCA
127 GAGGACATTTCTATAAGCATTCAAATTGGAACGAAATGGACTATCATGCCAAACTATC-CAGCCA
* *
64142092 AACTACCCTG
191 AACTGCCTTG
* * * * *
64142102 TCAATATTTTGATTGAATGCACAAGTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAAT
1 CCAA-AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * * *
64142167 GGATTGTAATGTC-AAACTACCAAGCCAAACTAACCTGCCAATATTTGATTGAATACAAAATTAA
65 GGACTGTCATG-CAAAACTACCCAGCCAAACT-ACCTGCCAA-AATTGATTGAATGCAAAATTAA
* * ** *
64142231 GAGGACATTTCTATAAGCATTCAAAATGGGATAAAAT-GA--AT--TG----TC-A--C-GCCAA
127 GAGGACATTTCTATAAGCATTCAAATTGGAACGAAATGGACTATCATGCCAAACTATCCAGCCAA
* * *
64142283 ACTACCCTA
192 ACTGCCTTG
* * * ** *
64142292 CCAAAATTTGATTGAACGCAAAATTAAGAGGACATTTCTATAAACATTTAAATTGATATGAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* * * * * * *
64142357 AACTATCATACCAAACTACCCAGCCAAACTGCTCTGCCAAAATTGATTGAACGTAAAATTAAGAG
66 GACTGTCATGCAAAACTACCCAGCCAAACTAC-CTGCCAAAATTGATTGAATGCAAAATTAAGAG
* * * * * * *
64142422 GACATTTTTATAAGCATTAAAATTGGAATGAAATAGACTGTCACGCCAAACTATCCAACCAAACT
130 GACATTTCTATAAGCATTCAAATTGGAACGAAATGGACTATCATGCCAAACTATCCAGCCAAACT
64142487 GCCTTG
195 GCCTTG
* * *
64142493 CCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTCTGTAAACATTCAAATTGGGACGAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* * **
64142558 GACTGTCATGGAAAATTACCCAGTGAAACTACCTGGCCAAAATTGATTGAATGCAAAATTAAGAG
66 GACTGTCATGCAAAACTACCCAGCCAAACTACCT-GCCAAAATTGATTGAATGCAAAATTAAGAG
* * * * * *
64142623 GTCATTTCTTTAAGCATTCAAATTGGGACGAAATGGACGATCATGTCAAACTATCCAGCTAAACT
130 GACATTTCTATAAGCATTCAAATTGGAACGAAATGGACTATCATGCCAAACTATCCAGCCAAACT
** *
64142688 ATCATG
195 GCCTTG
* * * ** *
64142694 CTAAAA-TTAATTGAATGCAAAATGAAGATAACATTTCTATAAGCATTCCAATTGGGA-GAAAAT
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG-AAAT
* * * * * *
64142757 GGACTATCATGAAAAACTACCCAGCCAAACTACCTTGGCAAAATTGATCGAACGCAAAATTCAGA
65 GGACTGTCATGCAAAACTACCCAGCCAAACTACC-TGCCAAAATTGATTGAATGCAAAATTAAGA
* * * * *
64142822 GGACATTTCTAAAAGCATTCAGATTGGAACTAAATGG-TTATCATGACAAACTA--C--CC-AA-
129 GGACATTTCTATAAGCATTCAAATTGGAACGAAATGGACTATCATGCCAAACTATCCAGCCAAAC
64142880 ---C-T-
194 TGCCTTG
* * * * *
64142882 --AAAATTTGACTGAATGCAAAATTAAGTGGACATTT-TGATAAACATTAAAATTGGGACAAAAT
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT-ATAAGCATTCAAATTGGGACGAAAT
* * * * * * *
64142944 GGACAGTCATGCCAAAA-TACCCAGCTAAATTTCCATG-TAGAAATTTGATTTAATACAAAATTA
65 GGACTGTCATG-CAAAACTACCCAGCCAAACTACC-TGCCA-AAA-TTGATTGAATGCAAAATTA
* * *
64143007 AGAGGACATTTATATAAACATTCAAATTGGAATGAAATGGACTATCATGCCAAACTATCCAGCCA
126 AGAGGACATTTCTATAAGCATTCAAATTGGAACGAAATGGACTATCATGCCAAACTATCCAGCCA
* * *
64143072 AACTTCATTT
191 AACTGCCTTG
* * * * ***
64143082 CCAAAA-TTAATTGAATGCAAAATCAAGAGGACATTTCTATAGGCATTCAATTTGATTCGAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* * * * * *
64143146 GACAGTCATGTC-AAACTACCCAGCCAAATTGCCCTGCCAATATTTGATTTAATGTAAAATTAAG
66 GACTGTCATG-CAAAACTACCCAGCCAAACT-ACCTGCCAA-AATTGATTGAATGCAAAATTAAG
* * * * * * * * * *
64143210 AGGATATTTCTTTAAGCAATCAAATT-CAGATGAAATAGATTGTCATGCCAAAGT-TCCAAGCTA
128 AGGACATTTCTATAAGCATTCAAATTGGA-ACGAAATGGACTATCATGCCAAACTATCC-AGCCA
* *
64143273 AACTACCCTG
191 AACTGCCTTG
* * ** * ** *
64143283 CCAATATTTGACTGAATGCAAAATTAAGAGGACATAACTATAAGCATTCAAATTGAGATAAAATT
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* * * * *
64143348 GACTGTCATGCCAAACT-----G------T-CCTACCAAAATTTGATTGAATGCATAATTAAAAT
66 GACTGTCATGCAAAACTACCCAGCCAAACTACCTGCCAAAA-TTGATTGAATGCAAAATTAAGAG
* * * * * * *
64143401 GACATTTCTATAAACATTCAAATTGGTACGAAATCGACTGTCATGTCAAACTA-CTCAACAAAAC
130 GACATTTCTATAAGCATTCAAATTGGAACGAAATGGACTATCATGCCAAACTATC-CAGCCAAAC
*
64143465 TG-GTATG
194 TGCCT-TG
* * * * *
64143472 CTAAAA-TT-ATTGAATGCAAAATTAAGAGCACATTTTTATAAGCATTAAAATTGGGAAGAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* * * * *
64143535 GACT-ACATTGCTAAACTACCCAGCCAAACTGCCCTGCAAAAATAGATTGAATGCAAAATTAAGA
66 GACTGTCA-TGCAAAACTACCCAGCCAAACT-ACCTGCCAAAATTGATTGAATGCAAAATTAAGA
* * * *
64143599 GGACATTTTTGTAAGCATTAAAATTGGGACGAAATGGACTATCATGCCAAACTATCCAGCCAAAC
129 GGACATTTCTATAAGCATTCAAATTGGAACGAAATGGACTATCATGCCAAACTATCCAGCCAAAC
* *
64143664 TGCCCTA
194 TGCCTTG
* * *
64143671 CCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAGATTGGGACAAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* * * *
64143736 GATTGTCTTGCAAAACTACCTTA-CCAAACTACCCTGCCAGAATTTGATTGAATGCAAAATTAAG
66 GACTGTCATGCAAAACTACC-CAGCCAAACTA-CCTGCCA-AAATTGATTGAATGCAAAATTAAG
* * * * *
64143800 AGGACAGTTCAAT-AGACACTCAAATTGGGACGAAATGTACTATCATGCCAAACTA-CCTAGCCA
128 AGGACATTTCTATAAG-CATTCAAATTGGAACGAAATGGACTATCATGCCAAACTATCC-AGCCA
64143863 AACTGCCTTG
191 AACTGCCTTG
* * * * * * * * *
64143873 CTAAAATTTGATTGAATACAAAATTAATAAGACATTTCAATAAACATTAAAATTGAGATGAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
64143938 GA
66 GA
64143940 GAATACAAAA
Statistics
Matches: 1470, Mismatches: 287, Indels: 161
0.77 0.15 0.08
Matches are distributed among these distances:
186 8 0.01
187 129 0.09
188 107 0.07
189 178 0.12
190 18 0.01
191 4 0.00
192 1 0.00
193 4 0.00
194 5 0.00
195 1 0.00
197 3 0.00
198 3 0.00
199 94 0.06
200 155 0.11
201 413 0.28
202 293 0.20
203 54 0.04
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.27
Consensus pattern (200 bp):
CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
GACTGTCATGCAAAACTACCCAGCCAAACTACCTGCCAAAATTGATTGAATGCAAAATTAAGAGG
ACATTTCTATAAGCATTCAAATTGGAACGAAATGGACTATCATGCCAAACTATCCAGCCAAACTG
CCTTG
Found at i:64142935 original size:87 final size:88
Alignment explanation
Indices: 64142810--64142972 Score: 188
Period size: 87 Copynumber: 1.9 Consensus size: 88
64142800 TTGATCGAAC
* * * * ** *
64142810 GCAAAATTCAGAGGACATTTCTAAAAGCATTCAGATTGGAACTAAATGGTTA-TCATGACAAACT
1 GCAAAATTAAGAGGACATTTCTAAAAGCATTAAAATTGGAACAAAATGGACAGTCATGACAAAAT
64142874 ACCCAACTAAAATTTGACTGAAT
66 ACCCAACTAAAATTTGACTGAAT
* * *
64142897 GCAAAATTAAGTGGACATTT-TGATAAA-CATTAAAATTGGGACAAAATGGACAGTCATGCCAAA
1 GCAAAATTAAGAGGACATTTCT-A-AAAGCATTAAAATTGGAACAAAATGGACAGTCATGACAAA
*
64142960 ATACCCAGCTAAA
64 ATACCCAACTAAA
64142973 TTTCCATGTA
Statistics
Matches: 62, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
86 1 0.02
87 38 0.61
88 23 0.37
ACGTcount: A:0.43, C:0.17, G:0.16, T:0.25
Consensus pattern (88 bp):
GCAAAATTAAGAGGACATTTCTAAAAGCATTAAAATTGGAACAAAATGGACAGTCATGACAAAAT
ACCCAACTAAAATTTGACTGAAT
Found at i:64143421 original size:88 final size:87
Alignment explanation
Indices: 64143283--64143452 Score: 216
Period size: 88 Copynumber: 1.9 Consensus size: 87
64143273 AACTACCCTG
* * *
64143283 CCAATATTTGACTGAATGCAAAATTAAGAGGACATAACTATAAGCATTCAAATTGAGATA-AAAT
1 CCAAAATTTGACTGAATGCAAAATTAAAAGGACATAACTATAAACATTCAAATTG-G-TACAAAT
*
64143347 TGACTGTCATGCCAAACTGTCCTA
64 CGACTGTCATGCCAAACTGTCCTA
* * * **
64143371 CCAAAATTTGATTGAATGCATAATTAAAATGACATTTCTATAAACATTCAAATTGGTACGAAATC
1 CCAAAATTTGACTGAATGCAAAATTAAAAGGACATAACTATAAACATTCAAATTGGTAC-AAATC
*
64143436 GACTGTCATGTCAAACT
65 GACTGTCATGCCAAACT
64143453 ACTCAACAAA
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
86 2 0.03
87 1 0.01
88 67 0.96
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (87 bp):
CCAAAATTTGACTGAATGCAAAATTAAAAGGACATAACTATAAACATTCAAATTGGTACAAATCG
ACTGTCATGCCAAACTGTCCTA
Found at i:64143716 original size:388 final size:387
Alignment explanation
Indices: 64141816--64143939 Score: 1476
Period size: 388 Copynumber: 5.4 Consensus size: 387
64141806 ATTCAAATTG
* * * *
64141816 AAAA-TTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGACAAAATGGA
1 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGAACGAAATGGA
* * * * * * * * *
64141880 ATGTGATGCCAGA-TTTCC--C--AAC--CA----AAATTTGATTGAATGCAAAATTGAA-AGGA
66 CTGTCATGTCAAACTATCCAGCAAAACTTCATGCTAAAATTAATTGAATGCAAAA-TCAAGAGAA
* * * * *
64141933 CATTTC-ATTAAACTTTCAAATTGGGACGAAATGAACTATCATGTCAAACTATCCAGCCAAACTT
130 CATTTCTA-TAAGCATTCAAATTGGGA-GAAATGGACTATCATGT-AAACTACCCAGCCAAACTG
* * * * * *
64141997 ACCTGCCAAAATTGATTGACTGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGATGA
192 CCCTGCAAAAATTGATTGAATGCAAAATTAAGAGGACATTT-TTTAAGCATTCAAATTGGGACGA
* * * * * * * *
64142062 AATGAACTATAAGGCCAAACTA-CACAGCCAAACTACCCTGTCAATATTTTGATTGAATGCACAA
256 AATGGATTATCATGCCAAACTATC-CAGCCAAACT-CCCT-CCAA-AATTTGACTGAATGCAAAA
* * * * * *
64142126 GTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGATTGTAATGTCAAACTACCAAG
317 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCCAAACTA-C---
64142191 CCAAACTAACCTGCC
378 CC--ACTAA--T-CC
* * * * * ** *
64142206 AATATTTGATTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAAATGGGATAAAATGAA
1 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGAACGAAATGGA
* * * * * * * * *
64142271 TTGTCACGCCAAACTA-CC--C--TAC--CA----AAATTTGATTGAACGCAAAATTAAGAGGAC
66 CTGTCATGTCAAACTATCCAGCAAAACTTCATGCTAAAATTAATTGAATGCAAAATCAAGAGAAC
* * ** * ** *
64142325 ATTTCTATAAACATTTAAATTGATATGAAATGAACTATCATACCAAACTACCCAGCCAAACTGCT
131 ATTTCTATAAGCATTCAAATTGGGA-GAAATGGACTATCAT-GTAAACTACCCAGCCAAACTGCC
* * * * * *
64142390 CTGCCAAAATTGATTGAACGTAAAATTAAGAGGACATTTTTATAAGCATTAAAATTGGAATGAAA
194 CTGCAAAAATTGATTGAATGCAAAATTAAGAGGACATTTTT-TAAGCATTCAAATTGGGACGAAA
* * * * * * * *
64142455 TAGACTGTCACGCCAAACTATCCAACCAAACTGCCTTGCCAAAATTTGATTAAATGCAAAATTAA
258 TGGATTATCATGCCAAACTATCCAGCCAAACT-CCCT-CCAAAATTTGACTGAATGCAAAATTAA
* * * ** *
64142520 GAGGACATTTCTGTAAACATTCAAATTGGGACGAAATGGACTGTCATGGAAAATTACCCAGTGAA
321 GAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCCAAACTACCC------
*
64142585 ACTACCTGGCC
380 ACTA-AT--CC
* * * *
64142596 AAAA-TTGATTGAATGCAAAATTAAGAGGTCATTTCTTTAAGCATTCAAATTGGGACGAAATGGA
1 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGAACGAAATGGA
* * *
64142660 C-GATCATGTCAAACTATCCAGCTAAACTATCATGCTAAAATTAATTGAATGCAAAATGAAGATA
66 CTG-TCATGTCAAACTATCCAGCAAAACT-TCATGCTAAAATTAATTGAATGCAAAATCAAGAGA
* * *
64142724 ACATTTCTATAAGCATTCCAATTGGGAGAAAATGGACTATCATGAAAAACTACCCAGCCAAACTA
129 ACATTTCTATAAGCATTCAAATTGGGAG-AAATGGACTATCATG-TAAACTACCCAGCCAAACTG
* * * * ** * * *
64142789 CCTTGGC-AAAATTGATCGAACGCAAAATTCAGAGGACATTTCTAAAAGCATTCAGATTGGAACT
192 CCCT-GCAAAAATTGATTGAATGCAAAATTAAGAGGACATTT-TTTAAGCATTCAAATTGGGACG
*
64142853 AAATGG-TTATCATGACAAACTA--C--CC-AA----CT--AAAATTTGACTGAATGCAAAATTA
255 AAATGGATTATCATGCCAAACTATCCAGCCAAACTCCCTCCAAAATTTGACTGAATGCAAAATTA
* * * * *
64142906 AGTGGACATTT-TGATAAACATTAAAATTGGGACAAAATGGACAGTCATGCCAAAATACCCAGCT
320 AGAGGACATTTCT-ATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCA-CT
64142970 AAATTTCC
383 -AA--TCC
* * * *
64142978 ATGTAGAAATTTGATTTAATACAAAATTAAGAGGACATTTATATAAACATTCAAATTGGAATGAA
1 ----A-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGAACGAA
* * * * *
64143043 ATGGACTATCATGCCAAACTATCCAGCCAAACTTCATTTCCAAAATTAATTGAATGCAAAATCAA
61 ATGGACTGTCATGTCAAACTATCCAGCAAAACTTCA-TGCTAAAATTAATTGAATGCAAAATCAA
* * * ***
64143108 GAGGACATTTCTATAGGCATTCAATTTGATTCGAAATGGAC-AGTCATGTCAAACTACCCAGCCA
125 GAGAACATTTCTATAAGCATTCAAATTG-GGAGAAATGGACTA-TCATGT-AAACTACCCAGCCA
* * * * * * * *
64143172 AATTGCCCTGCCAATATTTGATTTAATGTAAAATTAAGAGGATATTTCTTTAAGCAATCAAATTC
187 AACTGCCCTG-CAAAAATTGATTGAATGCAAAATTAAGAGGACATTT-TTTAAGCATTCAAATTG
* * * * * * *
64143237 AGATGAAATAGATTGTCATGCCAAAGT-TCCAAGCTAAACTACCCTGCCAATATTTGACTGAATG
250 GGACGAAATGGATTATCATGCCAAACTATCC-AGCCAAACT-CCCT-CCAAAATTTGACTGAATG
** * * *
64143301 CAAAATTAAGAGGACATAACTATAAGCATTCAAATTGAGATAAAATTGACTGTCATGCCAAACT-
312 CAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCCAAACTA
**
64143365 GTC-CT-A-CC
377 CCCACTAATCC
* * * * *
64143373 AAAATTTGATTGAATGCATAATTAAAATGACATTTCTATAAACATTCAAATTGGTACGAAATCGA
1 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGAACGAAATGGA
* *
64143438 CTGTCATGTCAAACTA-CTCAACAAAACTGGT-ATGCTAAAATT-ATTGAATGCAAAATTAAGAG
66 CTGTCATGTCAAACTATC-CAGCAAAACT--TCATGCTAAAATTAATTGAATGCAAAATCAAGAG
* * *
64143500 CACATTTTTATAAGCATTAAAATTGGGAAGAAATGGACTA-CATTGCTAAACTACCCAGCCAAAC
128 AACATTTCTATAAGCATTCAAATTGGG-AGAAATGGACTATCA-TG-TAAACTACCCAGCCAAAC
* *
64143564 TGCCCTGCAAAAATAGATTGAATGCAAAATTAAGAGGACATTTTTGTAAGCATTAAAATTGGGAC
190 TGCCCTGCAAAAATTGATTGAATGCAAAATTAAGAGGACATTTTT-TAAGCATTCAAATTGGGAC
* *
64143629 GAAATGGACTATCATGCCAAACTATCCAGCCAAACTGCCCTACCAAAATTTGATTGAATGCAAAA
254 GAAATGGATTATCATGCCAAACTATCCAGCCAAACT-CCCT-CCAAAATTTGACTGAATGCAAAA
* * * * *
64143694 TTAAGAAGACATTTCTATAAGCATTCAGATTGGGACAAAATGGATTGTCTTGCAAAACTACCTTA
317 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCCAAACTA-C---
*
64143759 CCAAACTACCCTGCC
378 CC--ACTA--AT-CC
* * * * * * *
64143774 AGAATTTGATTGAATGCAAAATTAAGAGGACAGTTCAATAGACACTCAAATTGGGACGAAATGTA
1 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGAACGAAATGGA
* * * * * * * * *
64143839 CTATCATGCCAAACTA-CCTAGCCAAACTGCCTTGCTAAAATTTGATTGAATACAAAATTAATA-
66 CTGTCATGTCAAACTATCC-AGCAAAACT-TCATGCTAAAA-TTAATTGAATGCAAAATCAAGAG
* * * *
64143902 AGACATTTCAATAAACATTAAAATTGAGATGAAATGGA
128 A-ACATTTCTATAAGCATTCAAATTGGGA-GAAATGGA
64143940 GAATACAAAA
Statistics
Matches: 1392, Mismatches: 250, Indels: 171
0.77 0.14 0.09
Matches are distributed among these distances:
381 1 0.00
382 4 0.00
383 1 0.00
384 1 0.00
386 4 0.00
387 82 0.06
388 306 0.22
389 189 0.14
390 190 0.14
391 236 0.17
392 5 0.00
393 1 0.00
394 3 0.00
395 6 0.00
396 4 0.00
397 2 0.00
398 2 0.00
400 19 0.01
401 214 0.15
402 7 0.01
403 114 0.08
404 1 0.00
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (387 bp):
AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGAACGAAATGGA
CTGTCATGTCAAACTATCCAGCAAAACTTCATGCTAAAATTAATTGAATGCAAAATCAAGAGAAC
ATTTCTATAAGCATTCAAATTGGGAGAAATGGACTATCATGTAAACTACCCAGCCAAACTGCCCT
GCAAAAATTGATTGAATGCAAAATTAAGAGGACATTTTTTAAGCATTCAAATTGGGACGAAATGG
ATTATCATGCCAAACTATCCAGCCAAACTCCCTCCAAAATTTGACTGAATGCAAAATTAAGAGGA
CATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCACTAATCC
Found at i:64143980 original size:54 final size:54
Alignment explanation
Indices: 64143886--64143991 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
64143876 AAATTTGATT
64143886 GAATACAAAATTAATAAGACATTTCAATAAACATTAAAATT-GAGATGAAATGGA
1 GAATACAAAATTAATAAGACATTTCAATAAACATTAAAATTAG-GATGAAATGGA
** * *
64143940 GAATACAAAATTAA-AAGACCATTTCTTTAAGCATTCAAATTAGGATGAAATG
1 GAATACAAAATTAATAAGA-CATTTCAATAAACATTAAAATTAGGATGAAATG
64143992 AATGGTCATG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
53 4 0.09
54 41 0.89
55 1 0.02
ACGTcount: A:0.50, C:0.09, G:0.13, T:0.27
Consensus pattern (54 bp):
GAATACAAAATTAATAAGACATTTCAATAAACATTAAAATTAGGATGAAATGGA
Found at i:64144268 original size:88 final size:88
Alignment explanation
Indices: 64144116--64144494 Score: 302
Period size: 88 Copynumber: 4.2 Consensus size: 88
64144106 ACTTCCTAGC
* ** ** *
64144116 CAAACTACCCTGCCAAAA-TTGATTAAACACAAAATTCAA-AGGACATTTCTAAAAGTATTTAAA
1 CAAACTACCCAGCCAAAATTTGATTAAATGCAAAATT-AAGAGGACATTTCTAAAAACATTCAAA
*
64144179 TTGGGATGAAATGGACTGTAATGT
65 TTGGGACGAAATGGACTGTAATGT
* *
64144203 CAAACTACCCAGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCAAAAAACATTCAAAT
1 CAAACTACCCAGCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTCTAAAAACATTCAAAT
* **
64144268 TGGGACGAAAAGGA-TAGCCATG-
66 TGGGACGAAATGGACT-GTAATGT
* * * * * *
64144290 CAAAAATACCCTGCCAAAATTTTATTAAATGCAAAATTAAGAAGACATTTCGATAAACATTCAAA
1 C-AAACTACCCAGCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTCTAAAAACATTCAAA
*
64144355 TTGGAACG-AATGGACTGTCAA-GT
65 TTGGGACGAAATGGACTGT-AATGT
** * * *
64144378 CAAACTGTCCAGCCAAACTTCCCTTCCTAAATTGATTGAATGCAAAATTAAGAGGACATTTCTAT
1 CAAACTACCCAGCC-AA-----------AATTTGATTAAATGCAAAATTAAGAGGACATTTCTAA
* * * * *
64144443 AAGCATTCAAATTGGTACAAAATGGACTGTCATGC
54 AAACATTCAAATTGGGACGAAATGGACTGTAATGT
*
64144478 CAAACTACCCAACCAAA
1 CAAACTACCCAGCCAAA
64144495 CTGCTTTGGC
Statistics
Matches: 231, Mismatches: 40, Indels: 41
0.74 0.13 0.13
Matches are distributed among these distances:
87 37 0.16
88 121 0.52
99 51 0.22
100 22 0.10
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (88 bp):
CAAACTACCCAGCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTCTAAAAACATTCAAAT
TGGGACGAAATGGACTGTAATGT
Done.