Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 195 of 322
Found at i:64144546 original size:100 final size:98
Alignment explanation
Indices: 64144301--64144629 Score: 342
Period size: 100 Copynumber: 3.3 Consensus size: 98
64144291 AAAAATACCC
* * * * * *
64144301 TGCCAAAATTTTATTAAATGCAAAATTAAGAAGACATTTCGATAAACATTCAAATTGGAACGAAT
1 TGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGG-ACAAAT
* * ** * * *
64144366 GGACTGTCAAGTCAAACTGTCCAGCCAAACTTCCCT
64 GGACTGTCATGCCAAACTACCCAACCAAAC-TGCTT
64144402 T-CCTAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACAAAA
1 TGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGG-AC-AAA
64144465 TGGACTGTCATGCCAAACTACCCAACCAAACTGCTT
63 TGGACTGTCATGCCAAACTACCCAACCAAACTGCTT
* * * *
64144501 TGGCAACATTTGATTGAATGCAAAATTAAGAGGACA-TTCTTTAAGCAATCAAATTCGATCGAAA
1 TGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGA-C-AAA
* * * *
64144565 TGGACTGTCATGCCAAACTTCCAAACCAAACAG-TAG
63 TGGACTGTCATGCCAAACTACCCAACCAAACTGCT-T
64144601 TGCCAATATTTGATTGAATGCAAAATTAA
1 TGCCAA-ATTTGATTGAATGCAAAATTAA
64144630 TAATTTATTT
Statistics
Matches: 196, Mismatches: 26, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
99 54 0.28
100 114 0.58
101 28 0.14
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (98 bp):
TGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGACAAATGG
ACTGTCATGCCAAACTACCCAACCAAACTGCTT
Found at i:64148603 original size:88 final size:87
Alignment explanation
Indices: 64148461--64148824 Score: 225
Period size: 88 Copynumber: 4.0 Consensus size: 87
64148451 GTGAAACTGC
* * ** *
64148461 CCTACCAAAATTTGTTTAAATGCAAAATTAATATTACATTTCTATAAGAGTTCAAA-TATGGATG
1 CCTACCAAAATTTGATTAAATGCAAAATTAAAAGGACATTTCTATAAGAGTTCAAATTA-GAATG
*
64148525 AAATGTACAATCATGCCAAACTA
65 AAATGGACAATCATGCCAAACTA
* *
64148548 CCTAGCCAAAATTTGATTAAATTCAAAATTAAAAGGACATTT-TGATAA-ATTTTCAAATTAGAA
1 CCTA-CCAAAATTTGATTAAATGCAAAATTAAAAGGACATTTCT-ATAAGA-GTTCAAATTAGAA
** *
64148611 TGAAATGGACTGTCATGTCAAACTA
63 TGAAATGGACAATCATGCCAAACTA
* * * * * *
64148636 CCCAACCAAACCTCCCTACCAAAACTAATTGAATGCAAAATTAAGAGAACATTTCTATAAGCA-T
1 -CCTACCAAA-AT---T--------TGATTAAATGCAAAATTAAAAGGACATTTCTATAAG-AGT
* * * * *
64148700 TCAAATTAGGACGAAATGGACTATCATACCAAATTA
52 TCAAATTAGAATGAAATGGACAATCATGCCAAACTA
* * * * * * * *
64148736 CCCTGCTAATATTTGATTAAATACATAATTAAAAGGACATTTCTATAA-ACATTCAAATTGGGAT
1 -CCTACCAAAATTTGATTAAATGCAAAATTAAAAGGACATTTCTATAAGA-GTTCAAATTAGAAT
**
64148800 GAAATGGACTGTCATGCCAAACTA
64 GAAATGGACAATCATGCCAAACTA
64148824 C
1 C
64148825 GGAGCCAAAC
Statistics
Matches: 215, Mismatches: 40, Indels: 44
0.72 0.13 0.15
Matches are distributed among these distances:
86 1 0.00
87 7 0.03
88 131 0.61
89 6 0.03
92 1 0.00
96 1 0.00
99 1 0.00
100 65 0.30
101 1 0.00
102 1 0.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (87 bp):
CCTACCAAAATTTGATTAAATGCAAAATTAAAAGGACATTTCTATAAGAGTTCAAATTAGAATGA
AATGGACAATCATGCCAAACTA
Found at i:64148673 original size:188 final size:188
Alignment explanation
Indices: 64148317--64151753 Score: 766
Period size: 189 Copynumber: 17.7 Consensus size: 188
64148307 GGGATGTTAC
* * ** * *
64148317 ATAAG-ATTCAAATTTGGACAAAATGGACTGTCATGCCAAACTACCCTGCCAAAA-TTGATTGAA
1 ATAAGCATTCAAATTAGGACGAAATGGACAATCATACCAAACTACCCTGCCAAAATTTGATTAAA
** * * * * ** * * **
64148380 CGCAAAATTAAGATGACATTTCTA-AAAGCATTCAAATTGGGACAAAATAGACTATCAT-AAAGA
66 TACAAAATTAAAAGGACATTTCTATAAA-CATTCAAATTAGAATGAAATGGACTGTCATGCCA-A
* ** * ** * * **
64148443 ACTA-TCAAGTGAAA-CTGCCCTACCAAAATTTGTTTAAATGCAAAATTAATATTACATTTCT
129 ACTACCCAA-CCAAACCT-CCCTACCAAAA-CTAATTGAATGCAAAATTAAGAGAACATTTCT
* * *
64148504 ATAAG-AGTTCAAA-TATGGATGAAATGTACAATCATGCCAAACTA-CCTAGCCAAAATTTGATT
1 ATAAGCA-TTCAAATTA-GGACGAAATGGACAATCATACCAAACTACCCT-GCCAAAATTTGATT
* ** *
64148566 AAATTCAAAATTAAAAGGACATTT-TGATAAATTTTCAAATTAGAATGAAATGGACTGTCATGTC
63 AAATACAAAATTAAAAGGACATTTCT-ATAAACATTCAAATTAGAATGAAATGGACTGTCATGCC
64148630 AAACTACCCAACCAAACCTCCCTACCAAAACTAATTGAATGCAAAATTAAGAGAACATTTCT
127 AAACTACCCAACCAAACCTCCCTACCAAAACTAATTGAATGCAAAATTAAGAGAACATTTCT
* * * *
64148692 ATAAGCATTCAAATTAGGACGAAATGGACTATCATACCAAATTACCCTGCTAATATTTGATTAAA
1 ATAAGCATTCAAATTAGGACGAAATGGACAATCATACCAAACTACCCTGCCAAAATTTGATTAAA
* * *
64148757 TACATAATTAAAAGGACATTTCTATAAACATTCAAATTGGGATGAAATGGACTGTCATGCCAAAC
66 TACAAAATTAAAAGGACATTTCTATAAACATTCAAATTAGAATGAAATGGACTGTCATGCCAAAC
** * * * ** ** *
64148822 TACGGAGCCAAA-CTACCTTGCCAATATTTGGTTGAATTCAAAATTAAGA-AGACATTTCT
131 TACCCAACCAAACCT-CCCTACCAA-AACTAATTGAATGCAAAATTAAGAGA-ACATTTCT
* * * *** * * * *
64148881 ATAAGCATTCAAATTGGGACAAAATTGATTGTCA-AGCCAAACTGCCCTTCCAAAATTTTATTGA
1 ATAAGCATTCAAATTAGGACGAAATGGACAATCATA-CCAAACTACCCTGCCAAAATTTGATTAA
* * * ** * * *
64148945 ATTCCAAATTAAGAA-GACATTTCTATAAACATTTAAATCGGTACGAAATGGACTGTCATGCAAA
65 ATACAAAATTAA-AAGGACATTTCTATAAACATTCAAATTAGAATGAAATGGACTGTCATGCCAA
* * * * ** * * *
64149009 ACTACTCGA-CAAAACTGCTCTACTGAAATTGATTGAATGCAAAATTAAGAGGACATTAT-T
129 ACTACCCAACCAAACCT-CCCTACCAAAACTAATTGAATGCAAAATTAAGAGAACATT-TCT
* * * * * * * * **
64149069 AAAAGAATTAAAATTGGGATGAAATGAACTGTCATGCAAAACTACCAGCCAAATTGTCCTGCCAA
1 ATAAGCATTCAAATTAGGACGAAATG----G--A--C-AATC-A-TA-CCAAACTACCCTGCCAA
* * ** * * * * *
64149134 AATTTGATTGAGTGTAAATTTAAAAGGATATTTCTA-AAAGCATTCAAATTGGGACGAAATGGAC
54 AATTTGATTAAATACAAAATTAAAAGGACATTTCTATAAA-CATTCAAATTAGAATGAAATGGAC
* * * * *
64149198 TATCATGCCAAACT-------------TCCTTGCCAAAATTTGATTGAATGCAAAATTAAGAGAA
118 TGTCATGCCAAACTACCCAACCAAACCTCCCTACCAAAA-CTAATTGAATGCAAAATTAAGAGAA
*
64149250 CATTACT
182 CATTTCT
* * * * * * ** *
64149257 ATAAACATTCAAGTTGGGATGAAACGGACTGTCATGCCAAACTACTCAGCCAAACCGCCCTACCA
1 ATAAGCATTCAAATTAGGACG-AA---A-TG----GACAATC-A-T-A-CCAAACTACCCTGCCA
* * * * * * * **
64149322 AAATTTGATTGAATTCAAAATTAAGATGATATTTCTATAAACATTCTAACTTAG-ACGACGTGGA
53 AAATTTGATTAAATACAAAATTAAAAGGACATTTCTATAAACATTC-AAATTAGAATGAAATGGA
** * * * * * *
64149386 CTGTCATGGAAAACTATCCAACCAAA-CTACCCTGCCAAAATTGATTGAATGCAAAATTAAAAGG
117 CTGTCATGCCAAACTACCCAACCAAACCT-CCCTACCAAAACTAATTGAATGCAAAATTAAGAGA
64149450 ACA-TTCT
181 ACATTTCT
* * * *
64149457 ATAAGCATTCAAAATGGGACGAAATGGACAATCATGCCAAACTACCCAGCCAAACTGTCATGCTA
1 ATAAGCATTCAAATTAGGACGAAATGGACAATCATACCAAACTACCCTGCCAAA-----A---T-
* * * * * * *
64149522 CAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACGAAATGGACT
57 ---TTGATTAAATACAAAATTAAAAGGACATTTCTATAAACATTCAAATTAGAATGAAATGGACT
* * * * * * *
64149587 GTCATG-CAAGCCTACCCAGCCAAA-CTACCCT-GCAAAATTGATT-AATGCAAAATTCAGAGGA
119 GTCATGCCAA-ACTACCCAACCAAACCT-CCCTACCAAAACTAATTGAATGCAAAATTAAGAGAA
*
64149648 CAATTCT
182 CATTTCT
* * * * *
64149655 ATAAGCATTCAAATTGGGACTAAACGGACTGTCATGCCAAACTACCTAGAAACACTTCCCTGCCA
1 ATAAGCATTCAAATTAGGACGAAATGGAC---AAT--C--A-TACC----AA-ACTACCCTGCCA
* * * * * *
64149720 ATA-TTGATTAAATGCAAAATTAATAA-GACATGTCTATAAGCATTCAAATTGGGATGAAATGGG
53 AAATTTGATTAAATACAAAATTAA-AAGGACATTTCTATAAACATTCAAATTAGAATGAAAT-GG
** * * * *
64149783 A-TACCATGCCAAA-T----AA-C--A-C-CGC-A-AAAAATTTGATTGAATGCAAAATTAAG-G
116 ACTGTCATGCCAAACTACCCAACCAAACCTCCCTACCAAAA-CTAATTGAATGCAAAATTAAGAG
*
64149834 TGACATTTCT
180 -AACATTTCT
* * * * * * * *
64149844 ATAA-AAGTTCAAACTGGGATGAAATAGACAGACATGCTAAAATACCCAGCCAAATTTCCCTACC
1 ATAAGCA-TTCAAATTAGGACGAAATGGAC--A-AT-C----AT----A-CCAAACTACCCTGCC
* * * ** * * * *
64149908 AAGATTTGATTAAATGCAAAATTAAGAGGGTATTTCGATAAACATTCAAATTGGGATGAAATTGA
52 AAAATTTGATTAAATACAAAATTAAAAGGACATTTCTATAAACATTCAAATTAGAATGAAATGGA
* * ** * *
64149973 CTGTCATGCAAAACTACCCAGA--AAACTTCCC-AGGAAAAATTGATTGAATGCAAAATTAAGAT
117 CTGTCATGCCAAACTACCCA-ACCAAACCTCCCTA-CCAAAACTAATTGAATGCAAAATTAAGA-
*
64150035 G-ACATATCT
179 GAACATTTCT
* * * *
64150044 ATAAGCATTCAAATTGGGACGAAATGGACTGTTATGCCAAACTACATAACAAAATATCCTAGCCA
1 ATAAGCATTCAAATTAGGACGAAAT-G---G--A---C-AA-T-CATACCAAACTACCCT-GCCA
* * * * *
64150109 AAATTTGATTAAATGA-AAAATTAAGATGACATTTCTATAAGA-GTTCAAATTTGGATGAAATGG
53 AAATTTGATTAAAT-ACAAAATTAAAAGGACATTTCTATAA-ACATTCAAATTAGAATGAAATGG
* * * ** * * *
64150172 ATTGTCATGTCAAACTACCCAGCCAAATTTCCC-AGCCAAAATTTGATTGAATGCAAAATTAATA
116 ACTGTCATGCCAAACTACCCAACCAAACCTCCCTA-CCAAAA-CTAATTGAATGCAAAATTAAGA
* *
64150236 GGACATTTCG
179 GAACATTTCT
* * * * ** * * * * *
64150246 ATAAAC-TTTAAATTGGGAAGAAATGGACTGTCATGCCAAACTTA-GCTACCAAAA-TCGATTGA
1 ATAAGCATTCAAATTAGGACGAAATGGACAATCATACCAAAC-TACCCTGCCAAAATTTGATTAA
* * * * * * * *
64150308 ATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCAAGTCAAA
65 ATACAAAATTAAAAGGACATTTCTATAAACATTCAAATTAGAATGAAATGGACTGTCATGCCAAA
* * * * * ** * * * * **
64150373 CTACCCAGCCCAA-CTGTCGTGCCAATATTTGATTGAATACAATATTAAAAGTTCATTTCT
130 CTACCCAACCAAACCT-CCCTACCAA-AACTAATTGAATGCAAAATTAAGAGAACATTTCT
* * * *
64150433 ATAAACATTCAAATTAAGATGAAATGGACTATTATGCCAAACTACTCAGCCAAAC-AGCCCTACC
1 ATAAGCATTCAAATTAGGACGAAATGGAC-A--AT------C-A-T-A-CCAAACTA-CCCTGCC
* * * * * * * **
64150497 AATATTTGATTGAATGCAAAATTAAGAGGATATTTATATAAGCATTCAAATGGGACA--AAATGG
52 AAAATTTGATTAAATACAAAATTAAAAGGACATTTCTATAAACATTCAAATTAGA-ATGAAATGG
* * * ** * * *
64150560 ACTG-CATGCTAAACTATCAAATGAAA-TTGCCCTGCCAAAATTTAATTGAATGCAAAATTAAGA
116 ACTGTCATGCCAAACTACCCAACCAAACCT-CCCTACCAAAA-CTAATTGAATGCAAAATTAAGA
64150623 GAACATTTCT
179 GAACATTTCT
* * * * * * *
64150633 ATAAACATTCAAATTGGGATGAAATGGA-ATGTCATGCCAAACTA-CCTAGCTAAAATTTGATTG
1 ATAAGCATTCAAATTAGGACGAAATGGACA-ATCATACCAAACTACCCT-GCCAAAATTTGATTA
* * * * * * * * * * *
64150696 TATGCAAAATTAAAAGGAAATTTTTGT-AA-GTGTCAAAATTGGGACGAAATAGACTATCATGCC
64 AATACAAAATTAAAAGGACATTTCTATAAACAT-TC-AAATTAGAATGAAATGGACTGTCATGCC
* * * * * *
64150759 AAACTACCTAGCCAAA-CTGGCCTA-CAAATATTTGATTGAATGCAAAATTAAGAGGACATTTCT
127 AAACTACCCAACCAAACCT-CCCTACCAAA-A-CTAATTGAATGCAAAATTAAGAGAACATTTCT
* * * * *
64150822 ATAAACATTCAAATTGGGATGAAATGAACTATCATGCCAAACTACCTGGCCAAACAACCCTGCCA
1 ATAAGCATTCAAATTAGGACGAAATGGAC-A--AT--C--A-TA-----CCAAACTACCCTGCCA
* * * * * * * * * * * * ** *
64150887 ATATTTGACTGAATGCAACATTAAGAGAATATTTCTATCAGCATTCAAATTGGGACAAAATAGAC
53 AAATTTGATTAAATACAAAATTAAAAGGACATTTCTATAAACATTCAAATTAGAATGAAATGGAC
* *** * ** * *
64150952 TGTCATGCCAAACTATCCAACCAAA-CTGTTGTGCCGAAATTTGATTGAATGTAAAATTAAGAGA
118 TGTCATGCCAAACTACCCAACCAAACCT-CCCTACC-AAAACTAATTGAATGCAAAATTAAGAGA
*
64151016 ATATTTCT
181 ACATTTCT
* * * ** * * * ** *
64151024 ATAAACATTCAAATTAGGAAGAAATGAACTGTCATGCCAAACTTCCATATC-AAATTTGATTGAA
1 ATAAGCATTCAAATTAGGACGAAATGGACAATCATACCAAACTACCCTGCCAAAATTTGATTAAA
* * * ** * * * * *
64151088 TGCAAAATTAAGAGGACATTTCAATAGGCACTCAAATTTGGACGAAATGGACTGTCATGCCGAAC
66 TACAAAATTAAAAGGACATTTCTATAAACATTCAAATTAGAATGAAATGGACTGTCATGCCAAAC
* *** *** * * *
64151153 TACCCAGCCAAA-CTGTGTTGTTAAAATTTGATTAAATGCAAAATTAAGAGAA-ATTTCT
131 TACCCAACCAAACCT-CCCTACCAAAA-CTAATTGAATGCAAAATTAAGAGAACATTTCT
* * ** * ** *
64151211 GTACGCATTCAAATCGGGACGAAATGTACTGTAATGGCAAACTATCCAGCCAAACTGGCCTACCA
1 ATAAGCATTCAAATTAGGACGAAATG----G--A---CAATC-AT--A-CCAAACTACCCTGCCA
* * ** * * * * ** *
64151276 AAATTAGATTGAATGTAAAATTAAGAA-GACATTTCTATAAGCATTAAAATTGGGACAAAATTGA
53 AAATTTGATTAAATACAAAATTAA-AAGGACATTTCTATAAACATTCAAATTAGAATGAAATGGA
* * * * * ** *
64151340 CTGTTATGCCAAACTA-CCTAGCAAAACTACCCTGCCTAAATTTGATTGAATGCAAAATTAAGAG
117 CTGTCATGCCAAACTACCCAACCAAACCT-CCCTACC-AAAACTAATTGAATGCAAAATTAAGAG
*
64151404 GACATTTCT
180 AACATTTCT
* * * * *
64151413 ATAAACATTAAAATTAGGACGAAATGGACTGTCATGTCAATCTACCCAGCGAAACTGCCCTACCA
1 ATAAGCATTCAAATTAGGACGAAATGGA----CA-ATC-A--TA--C--C-AAACTACCCTGCCA
** * * *** * * * * *
64151478 AAA-TTGATGGAATGCAAAATT--AA-GATATTTCTATATGTATTTAAATTGGGACGAAATGGAT
53 AAATTTGATTAAATACAAAATTAAAAGGACATTTCTATAAACATTCAAATTAGAATGAAATGGAC
* * * * ** * * *
64151539 TGTCATGTCAAACTACCCAGCC-AATCTGTCCTACCAATATTTGATTAAATGCAAAATTAAGAGG
118 TGTCATGCCAAACTACCCAACCAAACCT-CCCTACCAA-AACTAATTGAATGCAAAATTAAGAGA
64151603 ACATTTCT
181 ACATTTCT
** * * ** * *
64151611 ATAAAAATTCAAATTAGGATGAAATGTACTGTCATGCCAAACTACCCATTGCCTTGCCAAAATTG
1 ATAAGCATTCAAATTAGGACGAAATGGACAATCATACCAAACTA--C----CC-TGCCAAAATTT
* * * * * * * * *
64151676 GATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAACGGACTGTCAG
59 GATTAAATACAAAATTAAAAGGACATTTCTATAAACATTCAAATTAGAATGAAATGGACTGTCAT
64151741 GCCAAACTACCCA
124 GCCAAACTACCCA
64151754 GTCAACCTTC
Statistics
Matches: 2520, Mismatches: 502, Indels: 447
0.73 0.14 0.13
Matches are distributed among these distances:
185 6 0.00
186 9 0.00
187 222 0.09
188 443 0.18
189 450 0.18
190 90 0.04
191 11 0.00
192 14 0.01
193 26 0.01
194 6 0.00
195 7 0.00
196 55 0.02
197 35 0.01
198 222 0.09
199 105 0.04
200 309 0.12
201 199 0.08
202 271 0.11
203 9 0.00
204 7 0.00
205 1 0.00
206 5 0.00
207 1 0.00
208 3 0.00
209 1 0.00
210 2 0.00
211 11 0.00
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.27
Consensus pattern (188 bp):
ATAAGCATTCAAATTAGGACGAAATGGACAATCATACCAAACTACCCTGCCAAAATTTGATTAAA
TACAAAATTAAAAGGACATTTCTATAAACATTCAAATTAGAATGAAATGGACTGTCATGCCAAAC
TACCCAACCAAACCTCCCTACCAAAACTAATTGAATGCAAAATTAAGAGAACATTTCT
Found at i:64148934 original size:101 final size:101
Alignment explanation
Indices: 64148728--64148923 Score: 214
Period size: 101 Copynumber: 1.9 Consensus size: 101
64148718 GACTATCATA
* * * * * * *
64148728 CCAAATTACCCTGCTAATATTTGATTAAATACATAATTAA-AAGGACATTTCTATAAACATTCAA
1 CCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAA-GACATTTCTATAAGCATTCAA
* **
64148792 ATTGGGATGAAATGGACTGTCATGCCAAACTACGGAG
65 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCAG
* * * *
64148829 CCAAACTACCTTGCCAATATTTGGTTGAATTCAAAATTAAGAAGACATTTCTATAAGCATTCAAA
1 CCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAA
* * * *
64148894 TTGGGACAAAATTGATTGTCAAGCCAAACT
66 TTGGGACGAAATGGACTGTCATGCCAAACT
64148924 GCCCTTCCAA
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
101 79 0.98
102 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.29
Consensus pattern (101 bp):
CCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAA
TTGGGACGAAATGGACTGTCATGCCAAACTACCCAG
Found at i:64148966 original size:189 final size:184
Alignment explanation
Indices: 64148317--64151750 Score: 1164
Period size: 188 Copynumber: 17.7 Consensus size: 184
64148307 GGGATGTTAC
* * *
64148317 ATAAGATTCAAATTTGGACAAAATGGACTGTCATGCCAAACTACCCTGCCAAAA-TTGATTGAAC
1 ATAAGATTCAAA-TTGGACAAAATGGACTATCAAGCCAAACTACCCTGCCAAAATTTGATTGAAT
* * * * * * *
64148381 GCAAAATTAAGATGACATTTCTA-AAAGCATTCAAATTGGGACAAAATAGACTATCAT-AAAGAA
65 TCAAAATTAAAAGGACATTTCTATAAA-CATTCAAATTGGGACGAAATGGACTGTCATGCAA-AA
** * * * **
64148444 CTATCAAGTGAAACTGCCCTACCAAAATTTGTTTAAATGCAAAATTAATATTACATTTCT
128 CTA-CAAGCCAAACT-CCCTACC-AAATTTGATTGAATGCAAAATTAAGAAGACATTTCT
** * * * *
64148504 ATAAGAGTTCAAATATGGATGAAATGTACAATCATGCCAAACTA-CCTAGCCAAAATTTGATTAA
1 ATAAGA-TTCAAAT-TGGACAAAATGGACTATCAAGCCAAACTACCCT-GCCAAAATTTGATTGA
** * * *
64148568 ATTCAAAATTAAAAGGACATTT-TGATAAATTTTCAAATTAGAATGAAATGGACTGTCATGTC-A
63 ATTCAAAATTAAAAGGACATTTCT-ATAAACATTCAAATTGGGACGAAATGGACTGTCATG-CAA
** *
64148631 AACTACCCAA-CCAAACCTCCCTACCAAAACTAATTGAATGCAAAATTAAG-AGAACATTTCT
126 AACTA--CAAGCCAAA-CTCCCTACCAAATTTGATTGAATGCAAAATTAAGAAG-ACATTTCT
* * * * *
64148692 ATAAGCATTCAAATTAGGACGAAATGGACTATCATA-CCAAATTACCCTGCTAATATTTGATTAA
1 ATAAG-ATTCAAATT-GGACAAAATGGACTATCA-AGCCAAACTACCCTGCCAAAATTTGATTGA
* * * *
64148756 ATACATAATTAAAAGGACATTTCTATAAACATTCAAATTGGGATGAAATGGACTGTCATGCCAAA
63 ATTCAAAATTAAAAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCAAAA
* * * * *
64148821 CTACGGAGCCAAACTACCTTGCCAATATTTGGTTGAATTCAAAATTAAGAAGACATTTCT
128 CTAC-AAGCCAAACT-CCCTACCAA-ATTTGATTGAATGCAAAATTAAGAAGACATTTCT
* * * * * *
64148881 ATAAGCATTCAAATTGGGACAAAATTGATTGTCAAGCCAAACTGCCCTTCCAAAATTTTATTGAA
1 ATAAG-ATTCAAATT-GGACAAAATGGACTATCAAGCCAAACTACCCTGCCAAAATTTGATTGAA
* * * *
64148946 TTCCAAATTAAGAA-GACATTTCTATAAACATTTAAATCGGTACGAAATGGACTGTCATGCAAAA
64 TTCAAAATTAA-AAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCAAAA
** * * * *
64149010 CTACTCGACAAAACTGCTCTACTGAAA-TTGATTGAATGCAAAATTAAGAGGACATTAT-T
128 CTACAAG-CCAAACT-CCCTAC-CAAATTTGATTGAATGCAAAATTAAGAAGACATT-TCT
* * ** * * **
64149069 AAAAGAATTAAAATTGGGATGAAATGAACTGTCATGCAAAACTACCAGCCAAATTGTCCTGCCAA
1 ATAAG-ATTCAAATT-GGACAAAATGGAC--T-AT------C-A--AGCCAAACTACCCTGCCAA
* * *
64149134 AATTTGATTGAGTGT-AAATTTAAAAGGATATTTCTA-AAAGCATTCAAATTGGGACGAAATGGA
52 AATTTGATTGAAT-TCAAAATTAAAAGGACATTTCTATAAA-CATTCAAATTGGGACGAAATGGA
* * * * *
64149197 CTATCATGCCAAACT----TCC---TTGCC-A--AAATTTGATTGAATGCAAAATTAAG-AGAAC
115 CTGTCATGCAAAACTACAAGCCAAACTCCCTACCAAATTTGATTGAATGCAAAATTAAGAAG-AC
*
64149251 ATTACT
179 ATTTCT
* * * ** *
64149257 ATAAACATTCAAGTTGGGATGAAACGGACTGTCATGCCAAACTACTC-AGCCAAACCGCCCTACC
1 AT-AAGATTCAAATT-GGA-CAAA---A-TG----G----ACTA-TCAAGCCAAACTACCCTGCC
* * * * * **
64149321 AAAATTTGATTGAATTCAAAATTAAGATGATATTTCTATAAACATTCTAACTT-AGACGACGTGG
50 AAAATTTGATTGAATTCAAAATTAAAAGGACATTTCTATAAACATTC-AAATTGGGACGAAATGG
* * *
64149385 ACTGTCATGGAAAACTATCCAA-CCAAACTACCCTGCCAAAATTGATTGAATGCAAAATTAA-AA
114 ACTGTCATGCAAAACTA--CAAGCCAAACT-CCCTACCAAATTTGATTGAATGCAAAATTAAGAA
64149448 GGACA-TTCT
176 -GACATTTCT
* * * * *
64149457 ATAAGCATTCAAAATGGGACGAAATGGACAATCATGCCAAACTACCCAGCCAAACTGTCATGCTA
1 ATAAG-ATTC-AAATTGGACAAAATGGACTATCAAGCCAAACTACCCTGCCAAA-----A---T-
* * * *
64149522 CAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACGAAATGGACT
55 ---TTGATTGAATTCAAAATTAAAAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACT
** * * * * *
64149587 GTCATGCAAGCCTACCCAGCCAAACTACCCT-GCAAAATTGATT-AATGCAAAATTCAGAGGACA
117 GTCATGCAAAACTA-CAAGCCAAACT-CCCTACCAAATTTGATTGAATGCAAAATTAAGAAGACA
*
64149650 ATTCT
180 TTTCT
* * * *
64149655 ATAAGCATTCAAATTGGGACTAAACGGACTGTCATGCCAAACTACCTAGAAACACTTCCCTGCCA
1 ATAAG-ATTCAAATT-GGACAAAATGGAC--T-AT--C-AA--GCC----AA-ACTACCCTGCCA
* * * * * *
64149720 ATA-TTGATTAAATGCAAAATTAATAA-GACATGTCTATAAGCATTCAAATTGGGATGAAATGGG
51 AAATTTGATTGAATTCAAAATTAA-AAGGACATTTCTATAAACATTCAAATTGGGACGAAAT-GG
** * * ** **
64149783 A-TACCATGCCAAA-T--AA--C--AC-CGC-AAAAAATTTGATTGAATGCAAAATTAAGGTGAC
114 ACTGTCATGCAAAACTACAAGCCAAACTCCCTACCAAATTTGATTGAATGCAAAATTAAGAAGAC
64149838 ATTTCT
179 ATTTCT
* * ** * * * *
64149844 ATAAAAGTTCAAACTGGGATGAAATAGACAGACATGCTAAAATACCCAGCCAAATTTCCCTACCA
1 ATAAGA-TTCAAA-TTGGACAAAAT-G---G--A--CT---AT--CAAGCCAAACTACCCTGCCA
* * * * ** * * *
64149909 AGATTTGATTAAATGCAAAATTAAGAGGGTATTTCGATAAACATTCAAATTGGGATGAAATTGAC
51 AAATTTGATTGAATTCAAAATTAAAAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGAC
* * ** * *
64149974 TGTCATGCAAAACTACCCAG-AAAACTTCCC-AGGAAAAATTGATTGAATGCAAAATTAAGATGA
116 TGTCATGCAAAACTA-CAAGCCAAAC-TCCCTA-CCAAATTTGATTGAATGCAAAATTAAGAAGA
*
64150037 CATATCT
178 CATTTCT
* * *
64150044 ATAAGCATTCAAATTGGGACGAAATGGACTGTTATGCCAAACTACATAACAAAATATCCTAGCCA
1 ATAAG-ATTCAAATT-GGACAAAATGGAC---TAT--CAAGC--CA-AAC----TACCCT-GCCA
* ** * * * * *
64150109 AAATTTGATTAAATGAAAAATTAAGATGACATTTCTATAAGA-GTTCAAATTTGGATGAAATGGA
51 AAATTTGATTGAATTCAAAATTAAAAGGACATTTCTATAA-ACATTCAAATTGGGACGAAATGGA
* * * *
64150173 TTGTCATGTC-AAACTACCCAGCCAAATTTCCC-AGCCAAAATTTGATTGAATGCAAAATTAATA
115 CTGTCATG-CAAAACTA-CAAGCCAAA-CTCCCTA-CC-AAATTTGATTGAATGCAAAATTAAGA
* *
64150236 GGACATTTCG
175 AGACATTTCT
* * * * * *
64150246 ATAA-ACTTTAAATTGGGA-AGAAATGGACTGTCATGCCAAACTTA-GCTACCAAAA-TCGATTG
1 ATAAGA-TTCAAATT-GGACA-AAATGGACTATCAAGCCAAAC-TACCCTGCCAAAATTTGATTG
* * * * * *
64150307 AATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCAAGTC-A
62 AATTCAAAATTAAAAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCATG-CAA
* * * * * * * *
64150371 AACTACCCAGCCCAACTGTCGTGCCAATATTTGATTGAATACAATATTAA-AAGTTCATTTCT
126 AACTA-CAAGCCAAACT-CCCTACCAA-ATTTGATTGAATGCAAAATTAAGAAG-ACATTTCT
* * ** * * *
64150433 ATAAACATTCAAATTAAGATGAAATGGACTATTATGCCAAACTACTCAGCCAAACAGCCCTACCA
1 AT-AAGATTCAAATT-GGACAAAATGGACTATCAAGCC-AA--ACT-A-CC---CTG-CC-A--A
* * * * * *
64150498 ATATTTGATTGAATGCAAAATTAAGAGGATATTTATATAAGCATTCAAA-TGGGACAAAATGGAC
52 A-ATTTGATTGAATTCAAAATTAAAAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGAC
* *** * * *
64150562 TG-CATGCTAAACTATCAAATGAAATTGCCCTGCCAAAATTTAATTGAATGCAAAATTAAG-AGA
116 TGTCATGCAAAACTA-CAAGCCAAACT-CCCTACC-AAATTTGATTGAATGCAAAATTAAGAAG-
64150625 ACATTTCT
177 ACATTTCT
* ** * * * * *
64150633 ATAAACATTCAAATTGGGATGAAATGGAATGTCATGCCAAACTA-CCTAGCTAAAATTTGATTGT
1 AT-AAGATTCAAATT-GGACAAAATGGACTATCAAGCCAAACTACCCT-GCCAAAATTTGATTGA
* * * * * * * *
64150697 ATGCAAAATTAAAAGGAAATTTTTGT-AA-GTGTCAAAATTGGGACGAAATAGACTATCATGCCA
63 ATTCAAAATTAAAAGGACATTTCTATAAACAT-TC-AAATTGGGACGAAATGGACTGTCATGCAA
* * * *
64150760 AACTACCTAGCCAAACTGGCCTACAAATATTTGATTGAATGCAAAATTAAGAGGACATTTCT
126 AACTA-CAAGCCAAACT-CCCTACCAA-ATTTGATTGAATGCAAAATTAAGAAGACATTTCT
* ** * *
64150822 ATAAACATTCAAATTGGGATGAAATGAACTATCATGCCAAACTACCTGGCCAAACAACCCTGCCA
1 AT-AAGATTCAAATT-GGACAAAATGGAC--T-AT--C--A--A----GCCAAACTACCCTGCCA
* * * * * * * * * * *
64150887 ATATTTGACTGAATGCAACATTAAGAGAATATTTCTATCAGCATTCAAATTGGGACAAAATAGAC
51 AAATTTGATTGAATTCAAAATTAAAAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGAC
* *** * *
64150952 TGTCATGCCAAACTATCCAA-CCAAACTGTTGTGCCGAAATTTGATTGAATGTAAAATTAAG-AG
116 TGTCATGCAAAACTA--CAAGCCAAACT-CCCTACC-AAATTTGATTGAATGCAAAATTAAGAAG
*
64151015 AATATTTCT
177 -ACATTTCT
* * * * * * **
64151024 ATAAACATTCAAATTAGGA-AGAAATGAACTGTCATGCCAAACTTCCATATC-AAATTTGATTGA
1 AT-AAGATTCAAATT-GGACA-AAATGGACTATCAAGCCAAACTACCCTGCCAAAATTTGATTGA
* * * ** * * **
64151087 ATGCAAAATTAAGAGGACATTTCAATAGGCACTCAAATTTGGACGAAATGGACTGTCATGCCGAA
63 ATTCAAAATTAAAAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCAAAA
* *** *** * *
64151152 CTACCCAGCCAAACTGTGTTGTTAAAATTTGATTAAATGCAAAATTAAG-AGAAATTTCT
128 CTA-CAAGCCAAACT-CCCT-ACCAAATTTGATTGAATGCAAAATTAAGAAGACATTTCT
* * * * ** *
64151211 GTACGCATTCAAATCGGGACGAAATGTACTGTAATGGCAAACTATCCAGCCAAACTGGCCTACCA
1 ATAAG-ATTCAAAT-TGGAC---A---A----AATGG---ACTATCAAGCCAAACTACCCTGCCA
* * * * *
64151276 AAATTAGATTGAATGT-AAAATTAAGAA-GACATTTCTATAAGCATTAAAATTGGGACAAAATTG
51 AAATTTGATTGAAT-TCAAAATTAA-AAGGACATTTCTATAAACATTCAAATTGGGACGAAATGG
* * * * * *
64151339 ACTGTTATGCCAAACTACCTAGCAAAACTACCCTGCCTAAATTTGATTGAATGCAAAATTAAGAG
114 ACTGTCATGCAAAACTA-CAAGCCAAACT-CCCTACC-AAATTTGATTGAATGCAAAATTAAGAA
64151404 GACATTTCT
176 GACATTTCT
* * * * * *
64151413 ATAAACATTAAAATTAGGACGAAATGGACTGTCATGTCAATCTACCCAGCGAAACTGCCCTACCA
1 AT-AAGATTCAAATT-GGACAAAATGGA----C---T--ATC-A---AGCCAAACTACCCTGCCA
* * * *** * *
64151478 AAA-TTGATGGAATGCAAAATT--AA-GATATTTCTATATGTATTTAAATTGGGACGAAATGGAT
51 AAATTTGATTGAATTCAAAATTAAAAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGAC
* * * * *
64151539 TGTCATGTC-AAACTACCCAGCCAATCTGTCCTACCAATATTTGATTAAATGCAAAATTAAGAGG
116 TGTCATG-CAAAACTA-CAAGCCAAACT-CCCTACCAA-ATTTGATTGAATGCAAAATTAAGAAG
64151603 ACATTTCT
177 ACATTTCT
* ** * * * *
64151611 ATAAAAATTCAAATTAGGATGAAATGTACTGTCATGCCAAACTACCCATTGCCTTGCCAAAATTG
1 AT-AAGATTCAAATT-GGACAAAATGGACTATCAAGCCAAACTA--C----CC-TGCCAAAATTT
* * * * *
64151676 GATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAACGGACTGTCAG
57 GATTGAATTCAAAATTAAAAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
*
64151741 GCCAAACTAC
122 GCAAAACTAC
64151751 CCAGTCAACC
Statistics
Matches: 2502, Mismatches: 480, Indels: 522
0.71 0.14 0.15
Matches are distributed among these distances:
185 8 0.00
186 12 0.00
187 199 0.08
188 438 0.18
189 438 0.18
190 93 0.04
191 14 0.01
192 25 0.01
193 25 0.01
194 14 0.01
195 13 0.01
196 55 0.02
197 42 0.02
198 227 0.09
199 100 0.04
200 315 0.13
201 199 0.08
202 254 0.10
203 13 0.01
204 2 0.00
206 3 0.00
210 2 0.00
211 11 0.00
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.27
Consensus pattern (184 bp):
ATAAGATTCAAATTGGACAAAATGGACTATCAAGCCAAACTACCCTGCCAAAATTTGATTGAATT
CAAAATTAAAAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCAAAACTA
CAAGCCAAACTCCCTACCAAATTTGATTGAATGCAAAATTAAGAAGACATTTCT
Found at i:64149002 original size:88 final size:88
Alignment explanation
Indices: 64148827--64149013 Score: 232
Period size: 88 Copynumber: 2.1 Consensus size: 88
64148817 CAAACTACGG
* * *
64148827 AGCCAAACTACCTTGCCAATATTTGGTTGAATTCAAAATTAAGAAGACATTTCTATAAGCATTCA
1 AGCCAAACTACCTTGCCAAAATTTGATTGAATTCAAAATTAAGAAGACATTTCTATAAACATTCA
* * *
64148892 AATTGGGACAAAATTGATTGTCA
66 AATCGGGACAAAATGGACTGTCA
* * * *
64148915 AGCCAAACTGCCCTT-CCAAAATTTTATTGAATTCCAAATTAAGAAGACATTTCTATAAACATTT
1 AGCCAAACT-ACCTTGCCAAAATTTGATTGAATTCAAAATTAAGAAGACATTTCTATAAACATTC
* *
64148979 AAATCGGTACGAAATGGACTGTCA
65 AAATCGGGACAAAATGGACTGTCA
* *
64149003 TGCAAAACTAC
1 AGCCAAACTAC
64149014 TCGACAAAAC
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
87 1 0.01
88 78 0.94
89 4 0.05
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.29
Consensus pattern (88 bp):
AGCCAAACTACCTTGCCAAAATTTGATTGAATTCAAAATTAAGAAGACATTTCTATAAACATTCA
AATCGGGACAAAATGGACTGTCA
Found at i:64149225 original size:288 final size:284
Alignment explanation
Indices: 64148748--64153547 Score: 1735
Period size: 288 Copynumber: 16.3 Consensus size: 284
64148738 CTGCTAATAT
* * * * *
64148748 TTGATTAAATACATAATTAAAAGGACATTTCTATAAA-CATTCAAATTGGGATGAAATGGACTGT
1 TTGATTGAATGCAAAATTAAGAGGACATTT-TA-AAAGCATTAAAATTGGGATGAAATGGACTGT
* * * * * *
64148812 CATGCCAAACTACGGAGCCAAACTACCTTGCCAATATTTGGTTGAATTCAAAATTAAGAAGACAT
64 CATGCAAAACTAC-CAGCCAAACT-CCCTGCCAA-AATTGATTGAATGCAAAATTAAGAAGACAT
* * * * * *
64148877 TTCTATAAGCATTCAAATTGGGACAAAATTGATTGTCAAGCCAAACTGCCCTT-CCAAAATTTTA
126 TTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATGCCAAACT-ACCTTGCCAAAATTTTA
* * * *
64148941 TTGAATTCCAAATTAAGAAGACATTTCTATAAACATTTAAATCGGTACGAAATGGACTGTCATGC
190 TTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGTACGAAATGGACTGTCATGC
* * *
64149006 AAAACTACTC-GACAAAACTGCTCTACTGAAA
255 AAAACTACTCAG-CCAAACTGCCCTAC-AAAA
* *
64149037 TTGATTGAATGCAAAATTAAGAGGACATTATTAAAAGAATTAAAATTGGGATGAAATGAACTGTC
1 TTGATTGAATGCAAAATTAAGAGGACATT-TTAAAAGCATTAAAATTGGGATGAAATGGACTGTC
* * * * * *
64149102 ATGCAAAACTACCAGCCAAATTGTCCTGCCAAAATTTGATTGAGTGTAAATTTAA-AAGGATATT
65 ATGCAAAACTACCAGCCAAACT-CCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAA-GACATT
* * *
64149166 TCTAAAAGCATTCAAATTGGGACGAAATGGACTATCATGCCAAACTTCCTTGCCAAAATTTGATT
127 TCTATAAGCATTCAAATTGGGACGAAATGGACTATCATGCCAAACTACCTTGCCAAAATTTTATT
* * * * * *
64149231 GAATGCAAAATTAAG-AGAACATTACTATAAACATTCAAGTTGGGATGAAACGGACTGTCATGCC
192 GAATGCAAAATTAAGAAG-ACATTTCTATAAACATTCAAATTGGTACGAAATGGACTGTCATGCA
*
64149295 AAACTACTCAGCCAAACCGCCCTACCAAAA
256 AAACTACTCAGCCAAACTGCCCTA-CAAAA
* * * * * * * **
64149325 TTTGATTGAATTCAAAATTAAGATGATATTTCTATAAA-CATTCTAACTT-AGACGACGTGGACT
1 -TTGATTGAATGCAAAATTAAGAGGACATTT-TA-AAAGCATT-AAAATTGGGATGAAATGGACT
* *
64149388 GTCATGGAAAACTATCCAACCAAACTACCCTGCCAAAATTGATTGAATGCAAAATTAA-AAGGAC
62 GTCATGCAAAACTA-CCAGCCAAACT-CCCTGCCAAAATTGATTGAATGCAAAATTAAGAA-GAC
* * **
64149452 A-TTCTATAAGCATTCAAAATGGGACGAAATGGACAATCATGCCAAACTACCCAGCCAAACTGTC
124 ATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATGCCAAACTACCTTGCCAAA-----
* *
64149516 ATGCTACAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACGAAA
184 AT--T----TT-ATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGTACGAAA
** * * *
64149581 TGGACTGTCATGCAAGCCTACCCAGCCAAACTACCCTGCAAAA
242 TGGACTGTCATGCAAAACTACTCAGCCAAACTGCCCTACAAAA
* * * * *
64149624 TTGATT-AATGCAAAATTCAGAGGACAATTCTATAAGCATTCAAATTGGGACT-AAACGGACTGT
1 TTGATTGAATGCAAAATTAAGAGGAC-ATTTTAAAAGCATTAAAATTGGGA-TGAAATGGACTGT
* * * * *
64149687 CATGCCAAACTACCTAG-AAACACTTCCCTGCCAATATTGATTAAATGCAAAATTAATAAGACAT
64 CATGCAAAACTACC-AGCCAA-AC-TCCCTGCCAAAATTGATTGAATGCAAAATTAAGAAGACAT
* * * * *
64149751 GTCTATAAGCATTCAAATTGGGATGAAATGGGA-TACCATGCCAAA-TAACAC-CGCAAAAAATT
126 TTCTATAAGCATTCAAATTGGGACGAAAT-GGACTATCATGCCAAACT-AC-CTTGC-CAAAATT
* ** * * * * * *
64149813 TGATTGAATGCAAAATTAAGGTGACATTTCTATAAA-AGTTCAAACTGGGATGAAATAGACAGAC
187 TTATTGAATGCAAAATTAAGAAGACATTTCTATAAACA-TTCAAATTGGTACGAAATGGACTGTC
* * * *
64149877 ATGCTAAAA-TACCCAGCCAAATTTCCCTACCAAGAT
251 ATGC-AAAACTACTCAGCCAAACTGCCCTA-CAA-AA
* ** * * *
64149913 TTGATTAAATGCAAAATTAAGAGGGTATTTCGATAAA-CATTCAAATTGGGATGAAATTGACTGT
1 TTGATTGAATGCAAAATTAAGAGGACATTT-TA-AAAGCATTAAAATTGGGATGAAATGGACTGT
* * ** * *
64149977 CATGCAAAACTACCCAG-AAAACTTCCCAGGAAAAATTGATTGAATGCAAAATTAAGATGACATA
64 CATGCAAAACTA-CCAGCCAAAC-TCCCTGCCAAAATTGATTGAATGCAAAATTAAGAAGACATT
* *
64150041 TCTATAAGCATTCAAATTGGGACGAAATGGACTGTTATGCCAAACTACATAACAAAATATCCTAG
127 TCTATAAGCATTCAAATTGGGACGAAATGGACTATCATGCCAAACTAC----C------T--T-G
* * * * * *
64150106 CCAAAATTTGATTAAATGAAAAATTAAGATGACATTTCTATAAGA-GTTCAAATTTGG-ATGAAA
179 CCAAAATTTTATTGAATGCAAAATTAAGAAGACATTTCTATAA-ACATTCAAA-TTGGTACGAAA
* * * *
64150169 TGGATTGTCATGTC-AAACTACCCAGCCAAATTTCCC-AGCCAAAA
242 TGGACTGTCATG-CAAAACTACTCAGCCAAACTGCCCTA--CAAAA
* * * *
64150213 TTTGATTGAATGCAAAATTAATAGGACATTTCGATAAA-C-TTTAAATTGGGAAGAAATGGACTG
1 -TTGATTGAATGCAAAATTAAGAGGACATTT-TA-AAAGCATTAAAATTGGGATGAAATGGACTG
* * * *
64150276 TCATGCCAAACT--TAG---------CTACCAAAATCGATTGAATGCAAAATTAAG-AGAACATT
63 TCATGCAAAACTACCAGCCAAACTCCCTGCCAAAATTGATTGAATGCAAAATTAAGAAG-ACATT
* * * *
64150329 TCTATAAGCATTCAAATTGGGATGAAATGGACTGTCAAGTCAAACTACCCAGCCCAACTGTCGTG
127 TCTATAAGCATTCAAATTGGGACGAAATGGACTATCATGCCAAACT----A---C--C--T--TG
* * * * * * *
64150394 CCAATATTTGATTGAATACAATATTAA-AAGTTCATTTCTATAAACATTCAAATTAAG-ATGAAA
179 CCAAAATTTTATTGAATGCAAAATTAAGAAG-ACATTTCTATAAACATTCAAATT-GGTACGAAA
* * * * *
64150457 TGGACTATTATGCCAAACTACTCAGCCAAACAGCCCTACCAATAT
242 TGGACTGTCATGCAAAACTACTCAGCCAAACTGCCCTA-CAA-AA
* * * **
64150502 TTGATTGAATGCAAAATTAAGAGGATATTTATATAAGCATTCAAA-TGGGACAAAATGGACTG-C
1 TTGATTGAATGCAAAATTAAGAGGACATTT-TAAAAGCATTAAAATTGGGATGAAATGGACTGTC
* * *** * *
64150565 ATGCTAAACTATCAAATGAAATTGCCCTGCCAAAATTTAATTGAATGCAAAATTAAG-AGAACAT
65 ATGCAAAACTA-CCAGCCAAACT-CCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAAG-ACAT
* * * * * * *
64150629 TTCTATAAACATTCAAATTGGGATGAAATGGAATGTCATGCCAAACTACCTAGCTAAAATTTGAT
126 TTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATGCCAAACTACCTTGCCAAAATTTTAT
* * * * * * * *
64150694 TGTATGCAAAATTAA-AAGGAAATTTTTGT-AA-GTGTCAAAATTGGGACGAAATAGACTATCAT
191 TGAATGCAAAATTAAGAA-GACATTTCTATAAACAT-TC-AAATTGGTACGAAATGGACTGTCAT
* *
64150756 GCCAAACTAC-CTAGCCAAACTGGCCTACAAATA
253 GCAAAACTACTC-AGCCAAACTGCCCTACAAA-A
* * *
64150789 TTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAA-CATTCAAATTGGGATGAAATGAACTA
1 -TTGATTGAATGCAAAATTAAGAGGACATTT-TA-AAAGCATTAAAATTGGGATGAAATGGACTG
* * * * * * *
64150853 TCATGCCAAACTACCTGGCCAAACAACCCTGCCAATATTTGACTGAATGCAACATTAAG-AGAAT
63 TCATGCAAAACTACC-AGCCAAAC-TCCCTGCCAA-AATTGATTGAATGCAAAATTAAGAAG-AC
* * * *
64150917 ATTTCTATCAGCATTCAAATTGGGACAAAATAGACTGTCATGCCAAACTATCCAACCAAACTGTT
124 ATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATGCCAAAC--T---A-C---C---T
* * * * *
64150982 GTGCCGAAATTTGATTGAATGTAAAATTAAG-AGAATATTTCTATAAACATTCAAATTAGG-AAG
177 -TGCCAAAATTTTATTGAATGCAAAATTAAGAAG-ACATTTCTATAAACATTCAAATT-GGTACG
* * * *
64151045 AAATGAACTGTCATGCCAAACT--T---CC--A-T---AT-CAAAT
239 AAATGGACTGTCATGCAAAACTACTCAGCCAAACTGCCCTACAAAA
* * * * * *
64151079 TTGATTGAATGCAAAATTAAGAGGACATTTCAATAGGCACTCAAATTTGGACGAAATGGACTGTC
1 TTGATTGAATGCAAAATTAAGAGGACATTTTAA-AAGCATTAAAATTGGGATGAAATGGACTGTC
** *** ** * *
64151144 ATGCCGAACTACCCAGCCAAACTGTGTTGTTAAAATTTGATTAAATGCAAAATTAAG-AGAAATT
65 ATGCAAAACTA-CCAGCCAAACT-CCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAAGACATT
* * * * *
64151208 TCTGTACGCATTCAAATCGGGACGAAATGTACTGTAATGGCAAACTATCCAGCCAAACTGGCC-T
127 TCTATAAGCATTCAAATTGGGACGAAATGGAC--T-AT------C-AT---GCCAAACT-ACCTT
* ** * * * * *
64151272 ACCAAAATTAGATTGAATGTAAAATTAAGAAGACATTTCTATAAGCATTAAAATTGGGACAAAAT
178 GCCAAAATTTTATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGTACGAAAT
* * * * * * *
64151337 TGACTGTTATGCCAAACTAC-CTAGCAAAACTACCCTGCCTAAAT
243 GGACTGTCATGCAAAACTACTC-AGCCAAACTGCCCT-AC-AAAA
* *
64151381 TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAA-CATTAAAATTAGGACGAAATGGACTGT
1 TTGATTGAATGCAAAATTAAGAGGACATTT-TA-AAAGCATTAAAATTGGGATGAAATGGACTGT
* * * * *
64151445 CATGTC-AATCTACCCAGCGAAACTGCCCTACCAAAATTGATGGAATGCAAAATT---AAGATAT
64 CATG-CAAAACTA-CCAGCCAAACT-CCCTGCCAAAATTGATTGAATGCAAAATTAAGAAGACAT
* * * * * *
64151506 TTCTATATGTATTTAAATTGGGACGAAATGGATTGTCATGTCAAACTACCCAGCCAATCTGTCCT
126 TTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATGCCAAACT----A-CC--T-TG-CC-
* * * * *
64151571 ACCAATATTTGATTAAATGCAAAATTAAGAGGACATTTCTATAAAAATTCAAATTAGG-ATGAAA
181 A--AA-ATTTTATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATT-GGTACGAAA
* * * * *
64151635 TGTACTGTCATGCCAAACTA--C--CC--ATTGCCTTGCCAAAA
242 TGGACTGTCATGCAAAACTACTCAGCCAAACTGCCCT-ACAAAA
* * * *
64151673 TTGGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAACGGACTGT
1 TT-GATTGAATGCAAAATTAAGAGGACATTT-TAAAAGCATTAAAATTGGGATGAAATGGACTGT
* * * * * ** * *
64151738 CAGGCCAAACTACCCAGTCAACCTTCTCTTTCAAAATTTGATTGAAATTTTTCCAAATTTGAATG
64 CATGCAAAACTA-CCAGCCAAAC-TCCCTGCCAAAA-TTGATTG-AA----TGCAAAATT-AA-G
* * * * * * *
64151803 CTTATAGAAATTTCCTCTTAATTTTGATTTCAATCAAATTTTGAAAGAGAAGGTTGACTGGGTAG
119 ---A-AGACATTT-CT-ATAA----G----CATTCAAA-TTGGGACGA-AA--TGGAC----TA-
* ** * *** * *
64151868 T-TTGGCCTGAC-AGTCCGTTTCGTCCAAACTACCCA-AGCCAAACTACCCTACCAAAATTGGAT
161 TCAT-GCCAAACTA--CC--TT-G-CCAAAAT-TTTATTG----A--A---T-GCAAAATT--A-
* * * * * * * ** * ***
64151930 TGAATTCAAATTTAAC-A-AAACATTTCTATAAGT-ATTC-AAATTGGGGC-GAAATGGACTGTC
205 AGAA--GACATTT--CTATAAACA-TTC-A-AATTGGTACGAAA-T-GGACTGTCATGCA-AAAC
* * * *
64151990 ATGC-CAAATTACCTAACCAAATTGCCCTGCCAAAA
260 -TACTC---------AGCCAAACTGCCCT-ACAAAA
* * * * * * *
64152025 TTGATTGAATGTAAAATTAAGAGAATATTTCTATAAGCATTCAAATTGGAATGAAATGGGA-TGC
1 TTGATTGAATGCAAAATTAAGAGGACATTT-TAAAAGCATTAAAATTGGGATGAAAT-GGACTGT
* ** *
64152089 CATGCCAAACTACCCAGCCAAACTACCCAACCAAAAATTGATTGAATGCAAAATTAAGAGGACAG
64 CATGCAAAACTA-CCAGCCAAACT-CCCTGCC-AAAATTGATTGAATGCAAAATTAAGAAGACA-
* ** *
64152154 TTT-TATAAG-AGTTTAAATTGGGATAAAATGGA-TAGTCATTCCAAAATGTCTAGCCAAATTTC
125 TTTCTATAAGCA-TTCAAATTGGGACGAAATGGACTA-TCATGCC-AAA---CT------A---C
* * * * * *
64152216 CTTGCCAAAATTTGATTAAATGCAAAATTAAGAGGATATTTCGATAAACATTCAAATTGGGACGA
175 CTTGCCAAAATTTTATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGTACGA
** * * * * ** *
64152281 AATAAACTGCCATGCCAAACTACCCAGCAAAACTTACCTGCCAAAA
240 AATGGACTGTCATGCAAAACTACTCAGCCAAACTGCCCT-ACAAAA
* * * ** *
64152327 TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGTATTCAAATTGGGACAAAATGGACTATC
1 TTGATTGAATGCAAAATTAAGAGGACATTT-TAAAAGCATTAAAATTGGGATGAAATGGACTGTC
* ** * *
64152392 ATGCCAAACT----G------T-TTTGCCAAAATTTGACTGACTGCAAAATTAAGATA-ACATTT
65 ATGCAAAACTACCAGCCAAACTCCCTGCCAAAA-TTGATTGAATGCAAAATTAAGA-AGACATTT
* * ** *** *
64152445 CTATAAG-AGTTCAAATTTGGAAGAAATGGACGGTCATGCCAAACTACCCAACCAAAATTTGATT
128 CTATAAGCA-TTCAAATTGGGACGAAATGGACTATCATGCCAAACTACCTTGCCAAAATTTTATT
* * * * * *
64152509 GAATGCAAAATTAAGAGGACATTT-TAATAAACTTTCAAATTGGGACAAAATGGATTGTCATGCC
192 GAATGCAAAATTAAGAAGACATTTCT-ATAAACATTCAAATTGGTACGAAATGGACTGTCATGCA
64152573 AAACT--T---CC---CTG--C--CAAAA
256 AAACTACTCAGCCAAACTGCCCTACAAAA
* * * * *
64152590 TTGATTGAATGCAAAATTAAGAAGACATTTCAATAAGCATTCAAATTGGGACGAAATGGACTATC
1 TTGATTGAATGCAAAATTAAGAGGACATTTTAA-AAGCATTAAAATTGGGATGAAATGGACTGTC
* * * * * * * *
64152655 AAGCCAAACTACCCAACCAAACTGCCTTGCCAATATTTG-TTAAAATGTAATATTAA-AAGGACA
65 ATGCAAAACTA-CCAGCCAAACT-CCCTGCCAA-AATTGATT-GAATGCAAAATTAAGAA-GACA
* * * *
64152718 TTTCTATAAACATTCAAATTGGGACAAAATGGACTACCATGCCAAACTACCTAGCCAAACAGCCC
125 TTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATGCCAAACTACCTTGCC--A-A----
* * * * * * *
64152783 TTCCAATATTTGATTAAATGCAAAATTAAGAGGATATTTTTATAAGCATTCAAATTGGGACAAAA
183 ----AAT-TTT-ATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGTACGAAA
* *
64152848 TGGACTGTCATGGC-AAACTA-TCCAACCAAACTGCCCTGCCAAAA
242 TGGACTGTCAT-GCAAAACTACT-CAGCCAAACTGCCCT-ACAAAA
* * * * ** *
64152892 TTTGATTGAATGCAAAATTAAGAGGACATTTCAATAAACTTTCAAATTGGGACAAAATAGACTGT
1 -TTGATTGAATGCAAAATTAAGAGGACATTTTAA-AAGCATTAAAATTGGGATGAAATGGACTGT
* *
64152957 CATGCCAAACT-----------TCCCTACCAAAATTGATTGAATGCAAAA-TAA-AAGGACATTT
64 CATGCAAAACTACCAGCCAAACTCCCTGCCAAAATTGATTGAATGCAAAATTAAGAA-GACATTT
* * * *
64153009 CTTTAAACATTCAAATTGGGACGAAATGGACTGTCAAGCCAAACTACCCAGCCAAACTGCCTTGC
128 CTATAAGCATTCAAATTGGGACGAAATGGAC--T--A-TC--A-T-----GCCAAACTACCTTGC
* * * * * * * *
64153074 CAATATTTGATTGAATGTAATATTAA-AAGGACATTTCTATAAACATTCAAATTGGGATGGAATA
180 CAAAATTTTATTGAATGCAAAATTAAGAA-GACATTTCTATAAACATTCAAATTGGTACGAAATG
** * * * * *
64153138 GACTACCATGCCAAACTACCCAGCCAAACAGCCCTTCCAATAT
244 GACTGTCATGCAAAACTACTCAGCCAAACTGCCC-TACAA-AA
* * * * **
64153181 TTGATTAAATGCAAAATTAAGAGGATATTTTTATAAA-TATTCAAATTGGGACAAAATGGACTGT
1 TTGATTGAATGCAAAATTAAGAGGACA-TTTTA-AAAGCATTAAAATTGGGATGAAATGGACTGT
* * *
64153245 CATGCTAAACTATCCAGCCAAACTGCCCTGCTAAAATTTGATTGAATGCAAAATTAA-AAGAATA
64 CATGCAAAACTA-CCAGCCAAACT-CCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAAG-ACA
* ** * * * * *
64153309 TTTCTATAAACATTCAAATT-GGAAAAAATGGACTGTCATGCCAAACTGCCCTACCAAAATTTGA
125 TTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATGCCAAACTACCTTGCCAAAATTTTA
* * *** * * * *
64153373 TTGAATGAAAAATTAAG-AGAACATTTCAATGGGCACTCAAATTTGG-ATGAAATGGACTATAAT
190 TTGAATGCAAAATTAAGAAG-ACATTTCTATAAACATTCAAA-TTGGTACGAAATGGACTGTCAT
** * * *
64153436 GCCGAACTACACAGCCAAACTACCCTGCCAAAA
253 GCAAAACTACTCAGCCAAACTGCCCT-ACAAAA
* * ** * * * *
64153469 TTTGATTGAATACAGAATTAAGAGGACATCTTTGTAAGCTTTCAAATT-GGACGAAATGGATTTG
1 -TTGATTGAATGCAAAATTAAGAGGACAT-TTTAAAAGCATTAAAATTGGGATGAAATGGA-CTG
* *
64153533 CCATGCCAAACTACC
63 TCATGCAAAACTACC
64153548 CAATCAAACT
Statistics
Matches: 3487, Mismatches: 635, Indels: 779
0.71 0.13 0.16
Matches are distributed among these distances:
262 1 0.00
263 72 0.02
266 1 0.00
268 2 0.00
271 1 0.00
274 2 0.00
275 2 0.00
276 142 0.04
277 2 0.00
278 1 0.00
279 2 0.00
285 2 0.00
286 10 0.00
287 118 0.03
288 833 0.24
289 629 0.18
290 200 0.06
291 12 0.00
292 16 0.00
293 96 0.03
294 14 0.00
295 12 0.00
296 17 0.00
297 88 0.03
298 60 0.02
299 119 0.03
300 124 0.04
301 234 0.07
302 203 0.06
303 155 0.04
304 7 0.00
305 1 0.00
307 1 0.00
308 7 0.00
309 2 0.00
310 4 0.00
311 6 0.00
312 8 0.00
313 7 0.00
314 11 0.00
316 2 0.00
317 1 0.00
318 5 0.00
319 14 0.00
320 6 0.00
321 6 0.00
322 8 0.00
323 9 0.00
325 3 0.00
326 5 0.00
327 5 0.00
328 4 0.00
329 19 0.01
330 5 0.00
331 3 0.00
332 3 0.00
333 3 0.00
334 10 0.00
335 7 0.00
336 7 0.00
337 6 0.00
338 4 0.00
339 2 0.00
340 3 0.00
341 4 0.00
344 1 0.00
345 2 0.00
346 7 0.00
350 5 0.00
351 81 0.02
352 23 0.01
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (284 bp):
TTGATTGAATGCAAAATTAAGAGGACATTTTAAAAGCATTAAAATTGGGATGAAATGGACTGTCA
TGCAAAACTACCAGCCAAACTCCCTGCCAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTA
TAAGCATTCAAATTGGGACGAAATGGACTATCATGCCAAACTACCTTGCCAAAATTTTATTGAAT
GCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGTACGAAATGGACTGTCATGCAAAACT
ACTCAGCCAAACTGCCCTACAAAA
Found at i:64149230 original size:88 final size:88
Alignment explanation
Indices: 64149128--64149299 Score: 229
Period size: 88 Copynumber: 2.0 Consensus size: 88
64149118 CAAATTGTCC
* * * * * *
64149128 TGCCAAAATTTGATTGAGTGTAAATTTAAAAGGATATTTCTA-AAAGCATTCAAATTGGGACGAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAAAGAACATTACTATAAA-CATTCAAATTGGGACGAA
*
64149192 ATGGACTATCATGCCAAACTTCCT
65 ACGGACTATCATGCCAAACTTCCT
* * *
64149216 TGCCAAAATTTGATTGAATGCAAAATTAAGAGAACATTACTATAAACATTCAAGTTGGGATGAAA
1 TGCCAAAATTTGATTGAATGCAAAATTAAAAGAACATTACTATAAACATTCAAATTGGGACGAAA
*
64149281 CGGACTGTCATGCCAAACT
66 CGGACTATCATGCCAAACT
64149300 ACTCAGCCAA
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
88 69 0.96
89 3 0.04
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (88 bp):
TGCCAAAATTTGATTGAATGCAAAATTAAAAGAACATTACTATAAACATTCAAATTGGGACGAAA
CGGACTATCATGCCAAACTTCCT
Found at i:64149991 original size:101 final size:101
Alignment explanation
Indices: 64149807--64150287 Score: 492
Period size: 101 Copynumber: 4.8 Consensus size: 101
64149797 AACACCGCAA
* * *
64149807 AAAATTTGATTGAATGCAAAATTAAG-GTGACATTTCTATAAA-AGTTCAAACTGGGATGAAATA
1 AAAATTTGATTGAATGCAAAATTAAGAG-GACATTTCTATAAACA-TTCAAATTGGGACGAAATG
* * * *
64149870 GACAGACATGCTAAAATACCCAGCCAAATTTCCCTACC
64 GACTGTCATGCCAAACTACCCAGCCAAATTTCCCTACC
* * ** * * *
64149908 AAGATTTGATTAAATGCAAAATTAAGAGGGTATTTCGATAAACATTCAAATTGGGATGAAATTGA
1 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGA
* * * **
64149973 CTGTCATGCAAAACTACCCAG-AAAACTTCCC-AGG
66 CTGTCATGCCAAACTACCCAGCCAAATTTCCCTACC
* * * *
64150007 AAAAATTGATTGAATGCAAAATTAAGATGACATATCTATAAGCATTCAAATTGGGACGAAATGGA
1 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGA
* ** * * *
64150072 CTGTTATGCCAAACTACATAACAAAATAT-CCTAGCC
66 CTGTCATGCCAAACTACCCAGCCAAATTTCCCTA-CC
* * * * * *
64150108 AAAATTTGATTAAATGAAAAATTAAGATGACATTTCTATAAGA-GTTCAAATTTGGATGAAATGG
1 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAA-ACATTCAAATTGGGACGAAATGG
* *
64150172 ATTGTCATGTCAAACTACCCAGCCAAATTTCCC-AGCC
65 ACTGTCATGCCAAACTACCCAGCCAAATTTCCCTA-CC
* * * *
64150209 AAAATTTGATTGAATGCAAAATTAATAGGACATTTCGATAAAC-TTTAAATTGGGAAGAAATGGA
1 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGA
64150273 CTGTCATGCCAAACT
66 CTGTCATGCCAAACT
64150288 TAGCTACCAA
Statistics
Matches: 311, Mismatches: 61, Indels: 17
0.80 0.16 0.04
Matches are distributed among these distances:
99 73 0.23
100 46 0.15
101 188 0.60
102 4 0.01
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.27
Consensus pattern (101 bp):
AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGA
CTGTCATGCCAAACTACCCAGCCAAATTTCCCTACC
Found at i:64150356 original size:87 final size:87
Alignment explanation
Indices: 64150207--64150374 Score: 239
Period size: 87 Copynumber: 1.9 Consensus size: 87
64150197 AATTTCCCAG
* * * *
64150207 CCAAAATTTGATTGAATGCAAAATTAATAGGACATTTCGATAAACTTTAAATTGGGAAGAAATGG
1 CCAAAATTCGATTGAATGCAAAATTAAGAGAACATTTCGATAAACTTCAAATTGGGAAGAAATGG
*
64150272 ACTGTCATGCCAAACTTAGCTA
66 ACTGTCAAGCCAAACTTAGCTA
* * *
64150294 CCAAAA-TCGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGATGAAATG
1 CCAAAATTCGATTGAATGCAAAATTAAGAGAACATTTCGATAAAC-TTCAAATTGGGAAGAAATG
*
64150358 GACTGTCAAGTCAAACT
65 GACTGTCAAGCCAAACT
64150375 ACCCAGCCCA
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
86 33 0.46
87 38 0.54
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.27
Consensus pattern (87 bp):
CCAAAATTCGATTGAATGCAAAATTAAGAGAACATTTCGATAAACTTCAAATTGGGAAGAAATGG
ACTGTCAAGCCAAACTTAGCTA
Found at i:64150407 original size:389 final size:389
Alignment explanation
Indices: 64148322--64153366 Score: 2559
Period size: 389 Copynumber: 12.9 Consensus size: 389
64148312 GTTACATAAG
* * * *
64148322 ATTCAAATTTGGACAAAATGGACTGTCATGCCAAAC-TACCCTGCCAAAATTGATTGAACGCAAA
1 ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTTA-CCTACCAAAATTGATTGAATGCAAA
* * * * * ** * *
64148386 ATTAAGATGACATTTCTAAAAGCATTCAAATTGGGACAAAATAGACTATCAT-AAAGAACTATCA
65 ATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCA-AACTACCC
** * * * * * * ** *
64148450 AGTGAAACTGCCCTACCAAAATTTGTTTAAATGCAAAATTAATATTACATTTCTATAAGA-GTTC
129 AGCCAAACTGTCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAA-ACATTC
* * **
64148514 AAATAT-GGATGAAATGTACAATCATG-C---C-A--AAC----TA-CCTAGCCAAAATTTGATT
193 AAAT-TGGGACGAAATGGACTGTCATGCCAAACTACTAACAAAATACCCTAGCCAAAATTTGATT
* * *** * * * *
64148566 AAATTCAAAATTAA-AAGGACATTT-TGATAAATTTTCAAATTAGAATGAAATGGACTGTCATGT
257 GAATGCAAAATTAAGAA-GACATTTCT-ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * *
64148629 CAAACTACCCAACCAAACCTCCCTACCAAAA-CTAATTGAATGCAAAATTAAGAGAACATTTCTA
320 CAAACTACCCAACCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
*
64148693 TAAGC
385 TAAAC
* * * * * * * * *
64148698 ATTCAAATTAGGACGAAATGGACTATCATACCAAA-TTACCCTGCTAATATTTGATTAAATACAT
1 ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTTA-CCTACCAA-AATTGATTGAATGCAA
* * * **
64148762 AATTAAAAGGACATTTCTATAAACATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTACGG
64 AATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCC
* * * * *
64148827 AGCCAAACT-ACCTTGCCAATATTTGGTTGAATTCAAAATTAAGAAGACATTTCTATAAGCATTC
129 AGCCAAACTGTCC-TGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTC
* * * * * * *
64148891 AAATTGGGACAAAATTGATTGTCAAG-C---C-A--AAC----TGCCCT-TCCAAAATTTTATTG
193 AAATTGGGACGAAATGGACTGTCATGCCAAACTACTAACAAAATACCCTAGCCAAAATTTGATTG
* * * * * * *
64148944 AATTCCAAATTAAGAAGACATTTCTATAAACATTTAAATCGGTACGAAATGGACTGTCATGCAAA
258 AATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAA
* * * * * * **
64149009 ACTACTCGACAAAACTGCTCTACTGAAA-TTGATTGAATGCAAAATTAAGAGGACATTAT-TA-A
323 ACTACCCAACCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATT-TCTATA
*
64149071 AAGA
387 AA-C
* * * * * *
64149075 ATTAAAATTGGGATGAAATGAACTGTCATGCAAAACTACCAGCCAAATTGTCCTGCCAAAATTTG
1 ATTCAAATTGGGACGAAATGGACTGTCATG--------CCA---AACTT-ACCTACCAAAA-TTG
* * * * * *
64149140 ATTGAGTGTAAATTTAAAAGGATATTTCTAAAAGCATTCAAATTGGGACGAAATGGAC--T-AT-
53 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* * *
64149201 -C--A-T-----GCCAAACT-TCCTTGCCAAAATTTGATTGAATGCAAAATTAAGAGAACATTAC
118 CCAAACTACCCAGCCAAACTGTCC-TGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTC
* * * * ***
64149256 TATAAACATTCAAGTTGGGATGAAACGGACTGTCATGCCAAACTACTCAGCCAAACCGCCCTA-C
182 TATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACT-A-ACAAAATACCCTAGC
* * * * * * **
64149320 CAAAATTTGATTGAATTCAAAATTAAGATGATATTTCTATAAACATTCTAACTT-AGACGACGTG
245 CAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTC-AAATTGGGACGAAATG
** * * *
64149384 GACTGTCATGGAAAACTATCCAACCAAACTACCCTGCCAAAA-TTGATTGAATGCAAAATTAAAA
309 GACTGTCATGCCAAACTACCCAACCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGA
*
64149448 GGACA-TTCTATAAGC
374 GGACATTTCTATAAAC
* ** * *
64149463 ATTCAAAATGGGACGAAATGGACAATCATGCCAAACTACCCAGCCAAACTGTCATGCTACAATTG
1 ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACT---TA-CC-TAC---CA----A-AATTG
*
64149528 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACGAAATGGACTGTCATG
53 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* ** * * *
64149593 -CAAGCCTACCCAGCCAAACTACCCTG-CAA-AATTGATT-AATGCAAAATTCAGAGGACAATTC
118 CCAA-ACTACCCAGCCAAACTGTCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTC
* * * * *
64149654 TATAAGCATTCAAATTGGGACTAAACGGACTGTCATGCCAAACTACCTAGA-AACACTTCCCT-G
182 TATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTA-CTA-ACAA-AATACCCTAG
* * * * *
64149717 CCAATA-TTGATTAAATGCAAAATTAATAAGACATGTCTATAAGCATTCAAATTGGGATGAAATG
244 CCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAAT-
** *
64149781 GGA-TACCATGCCAAA-T----AA-C--A----CC-GCAAAAAATTTGATTGAATGCAAAATTAA
308 GGACTGTCATGCCAAACTACCCAACCAAACTTCCCTGC-CAAAATTTGATTGAATGCAAAATTAA
64149832 G-GTGACATTTCTATAAA-
372 GAG-GACATTTCTATAAAC
* * * * * *
64149849 AGTTCAAACTGGGATGAAATAGACAGACATGCTAAAATACCCAGCCAAATTTCCCTACCAAGATT
1 A-TTCAAATTGGGACGAAAT-G---GAC-TG-T--CAT-----GCCAAACTTACCTACCAA-AAT
* ** * * * *
64149914 TGATTAAATGCAAAATTAAGAGGGTATTTCGATAAACATTCAAATTGGGATGAAATTGACTGTCA
51 TGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCA
* * * * * * * *
64149979 TGCAAAACTACCCAG-AAAACT-TCCCAG-GAAAAATTGATTGAATGCAAAATTAAGATGACATA
116 TGCCAAACTACCCAGCCAAACTGT-CCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATT
* * *
64150041 TCTATAAGCATTCAAATTGGGACGAAATGGACTGTTATGCCAAACTACATAACAAAATATCCTAG
180 TCTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTAC-TAACAAAATACCCTAG
* * * * *
64150106 CCAAAATTTGATTAAATGAAAAATTAAGATGACATTTCTATAAG-AGTTCAAATTTGGATGAAAT
244 CCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCA-TTCAAATTGGGACGAAAT
* * * * * *
64150170 GGATTGTCATGTCAAACTACCCAGCCAAATTTCCCAGCCAAAATTTGATTGAATGCAAAATTAAT
308 GGACTGTCATGCCAAACTACCCAACCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAG
*
64150235 AGGACATTTCGATAAAC
373 AGGACATTTCTATAAAC
* * * *
64150252 -TTTAAATTGGGAAGAAATGGACTGTCATGCCAAACTTAGCTACCAAAATCGATTGAATGCAAAA
1 ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTTACCTACCAAAATTGATTGAATGCAAAA
* * * *
64150316 TTAAGAGAACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCAAGTCAAACTACCCAG
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAG
* * * * * **
64150381 CCCAACTGTCGTGCCAATATTTGATTGAATACAATATTAAAAGTTCATTTCTATAAACATTCAAA
131 CCAAACTGTCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAA
** * * * * * * *
64150446 TTAAGATGAAATGGACTATTATGCCAAACTACTCAGCCAAACAGCCCTA-CCAATATTTGATTGA
196 TTGGGACGAAATGGACTGTCATGCCAAACTACT-AACAAAATA-CCCTAGCCAAAATTTGATTGA
* * * * *
64150510 ATGCAAAATTAAGAGGATATTTATATAAGCATTCAAA-TGGGACAAAATGGACTG-CATGCTAAA
259 ATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAA
* * ** * *
64150573 CTATCAAATGAAA-TTGCCCTGCCAAAATTTAATTGAATGCAAAATTAAGAGAACATTTCTATAA
324 CTACCCAACCAAACTT-CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAA
64150637 AC
388 AC
* * * *
64150639 ATTCAAATTGGGATGAAATGGAATGTCATGCCAAAC-TACCTAGCTAAAATTTGATTGTATGCAA
1 ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTTACCTA-CCAAAA-TTGATTGAATGCAA
* * * * * *
64150703 AATTAAAAGGAAATTTTTGTAAG--TGTCAAAATTGGGACGAAATAGACTATCATGCCAAACTAC
64 AATTAAGAGGACATTTCTATAAGCAT-TC-AAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * *
64150766 CTAGCCAAACTGGCCTACAAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATT
127 CCAGCCAAACTGTCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATT
* * * ** *
64150831 CAAATTGGGATGAAATGAACTATCATGCCAAACTACCTGGCCAAACA-ACCCT-GCCAATATTTG
192 CAAATTGGGACGAAATGGACTGTCATGCCAAACTA-CT-AACAAA-ATACCCTAGCCAAAATTTG
* * * * * *
64150894 ACTGAATGCAACATTAAG-AGAATATTTCTATCAGCATTCAAATTGGGACAAAATAGACTGTCAT
254 ATTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCAT
* ** * * * *
64150958 GCCAAACTATCCAACCAAACTGT-TGTGCCGAAATTTGATTGAATGTAAAATTAAGAGAATATTT
318 GCCAAACTACCCAACCAAACT-TCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTT
64151022 CTATAAAC
382 CTATAAAC
* * * * *
64151030 ATTCAAATTAGGAAGAAATGAACTGTCATGCCAAACTT-CCATATCAAATTTGATTGAATGCAAA
1 ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTTACC-TACCAAAATTGATTGAATGCAAA
* * * * *
64151094 ATTAAGAGGACATTTCAATAGGCACTCAAATTTGGACGAAATGGACTGTCATGCCGAACTACCCA
65 ATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
** ** * * * * **
64151159 GCCAAACTGTGTTGTTAAAATTTGATTAAATGCAAAATTAAGA-GAAATTTCTGTACGCATTCAA
130 GCCAAACTGTCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAA
* * * * * * * ** *
64151223 ATCGGGACGAAATGTACTGTAATGGCAAACTATCCAGCCAAACTGGCCTA-CCAAAATTAGATTG
195 ATTGGGACGAAATGGACTGTCATGCCAAACTA-CTA-ACAAAATACCCTAGCCAAAATTTGATTG
* * * * *
64151287 AATGTAAAATTAAGAAGACATTTCTATAAGCATTAAAATTGGGACAAAATTGACTGTTATGCCAA
258 AATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAA
* * * * *
64151352 ACTACCTAGCAAAACTACCCTGCCTAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAA
323 ACTACCCAACCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAA
64151417 AC
388 AC
* * **
64151419 ATTAAAATTAGGACGAAATGGACTGTCATGTCAATCTACCCAGCGAAACTGCCCTACCAAAATTG
1 ATTCAAATTGGGACGAAATGGACTGTCATG----------C--C-AAACTTACCTACCAAAATTG
* * * * * *
64151484 ATGGAATGCAAAATT-A-A-GATATTTCTATATGTATTTAAATTGGGACGAAATGGATTGTCATG
53 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* * * *
64151546 TCAAACTACCCAGCCAATCTGTCCTACCAATATTTGATTAAATGCAAAATTAAGAGGACATTTCT
118 CCAAACTACCCAGCCAAACTGTCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * * ** *
64151611 ATAAAAATTCAAATTAGGATGAAATGTACTGTCATGCCAAACTAC---C--CATTGCCTTGCCAA
183 ATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTAACAAAATACCCTAGCCAA
* * *
64151671 AATTGGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAACGGACT
248 AATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
* ** * * ** * *
64151736 GTCAGGCCAAACTACCCAGTCAACCTTCTCTTTCAAAATTTGATTGAAATTTTTCCAAATTTGAA
313 GTCATGCCAAACTACCCAACCAAACTTCCCTGCCAAAATTTGATTG-AA----TGCAAAATT-AA
* * *
64151801 TGCTTATAGAAATTTCCTCTTAATTTTGATTTC
372 -G---A-GGACATTT-CT-ATAA-----A---C
* * * * * * * *
64151834 AATCAAATTTTGAAAGAGAAGGTTGACTGGGT-AGTTTGGCCTGACAGTCCGTTTCGT-CCAAAC
1 ATTCAAA-TTGGGACGA-AA--TGGACT--GTCA---T-GCC--A-A--AC-TTACCTACCAAA-
** * * * * * *
64151897 TACCCAAGCCAAACT-ACCCTACCAAAATT-GGATTGAATTCAAATTTAAC-A-AAACATTTCTA
49 -A---TTG----ATTGA--AT-GCAAAATTAAGA--GGA--C--ATTT--CTATAAGCA-TTC-A
* *** * * * * * * * * *
64151958 TAAGT-ATTC-AAATTGGGGC-GAAATGGACTGTCATGCCAAATTACCTAACCAAATTGCCCTGC
93 -AATTGGGACGAAA-T-GGACTG---T-CA-TGCCA---AA--CTACCCAGCCAAACTGTCCTGC
* * * * * * *
64152020 CAA-AATTGATTGAATGTAAAATTAAGAGAATATTTCTATAAGCATTCAAATTGGAATGAAATGG
145 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAAT-G
* * * * * *
64152084 GA-TGCCATGCCAAACTACCCAGCCAAACTACCC-AACCAAAAATTGATTGAATGCAAAATTAAG
209 GACTGTCATGCCAAACTA-CTA-ACAAAATACCCTAGCCAAAATTTGATTGAATGCAAAATTAAG
* * ** * * ** * *
64152147 AGGACAGTTT-TATAAG-AGTTTAAATTGGGATAAAATGGA-TAGTCATTCCAAAATGTCTAGCC
272 AAGACA-TTTCTATAAGCA-TTCAAATTGGGACGAAATGGACT-GTCATGCCAAACTACCCAACC
* * * * *
64152209 AAATTTCCTTGCCAAAATTTGATTAAATGCAAAATTAAGAGGATATTTCGATAAAC
334 AAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAAC
** * *
64152265 ATTCAAATTGGGACGAAATAAACTGCCATGCCAAACTACCCAGCAAAACTTACCTGCCAAAATTG
1 ATTCAAATTGGGACGAAATGGACTG---T--C--A-T-----GCCAAACTTACCTACCAAAATTG
* *
64152330 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGTATTCAAATTGGGACAAAATGGAC--T-AT-
53 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
** * * * **
64152391 -C--A-T-----GCCAAACTGTTTTGCCAAAATTTGACTGACTGCAAAATTAAGATAACATTTCT
118 CCAAACTACCCAGCCAAACTGTCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * *
64152447 ATAAGA-GTTCAAATTTGGAAGAAATGGACGGTCATG-C---C-A--AAC----TACCC-AACCA
183 ATAA-ACATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTAACAAAATACCCTAGCCA
* * * *
64152499 AAATTTGATTGAATGCAAAATTAAGAGGACATTT-TAATAAACTTTCAAATTGGGACAAAATGGA
247 AAATTTGATTGAATGCAAAATTAAGAAGACATTTCT-ATAAGCATTCAAATTGGGACGAAATGGA
* *
64152563 TTGTCATG-------------CCAAACTTCCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAAG
311 CTGTCATGCCAAACTACCCAACCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGG
* *
64152614 ACATTTCAATAAGC
376 ACATTTCTATAAAC
* * * *
64152628 ATTCAAATTGGGACGAAATGGACTATCAAGCCAAAC-TACCCAACCAAACTGCCTTGCCAATATT
1 ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTTA-CCTACCAAA----ATTG-----A-T
* * * * * **
64152692 TGTTAAAATGTAATATTAAAAGGACATTTCTATAAACATTCAAATTGGGACAAAATGGACTACCA
55 TG----AATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCA
* * * * * *
64152757 TGCCAAACTACCTAGCCAAACAGCCCTTCCAATATTTGATTAAATGCAAAATTAAGAGGATATTT
116 TGCCAAACTACCCAGCCAAACTGTCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTT
* * * * * * *
64152822 TTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGGCAAACTATCCAACCAAACTGCCCT-G
181 CTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTA-CTAA-CAAAATACCCTAG
* * * * * *
64152886 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCAATAAACTTTCAAATTGGGACAAAATA
244 CCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* *
64152951 GACTGTCATG-------------CCAAACTTCCCTACCAAAA-TTGATTGAATGCAAAA-TAAAA
309 GACTGTCATGCCAAACTACCCAACCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGA
*
64153001 GGACATTTCTTTAAAC
374 GGACATTTCTATAAAC
* *
64153017 ATTCAAATTGGGACGAAATGGACTGTCAAGCCAAAC-TACCCAGCCAAACTGCCTTGCCAATATT
1 ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTTACCTA-CC--A----------AA-A-T
* * * * * * * **
64153081 TGATTGAATGTAATATTAAAAGGACATTTCTATAAACATTCAAATTGGGATGGAATAGACTACCA
51 TGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCA
* * * * *
64153146 TGCCAAACTACCCAGCCAAACAGCCCTTCCAATATTTGATTAAATGCAAAATTAAGAGGATATTT
116 TGCCAAACTACCCAGCCAAACTGTCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTT
* * * * * * * *
64153211 TTATAAATATTCAAATTGGGACAAAATGGACTGTCATGCTAAACTATCCAGCCAAACTGCCCT-G
181 CTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTA-CTA-ACAAAATACCCTAG
* * * **
64153275 CTAAAATTTGATTGAATGCAAAATTAA-AAGAATATTTCTATAAACATTCAAATT-GGAAAAAAT
244 CCAAAATTTGATTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTGGGACGAAAT
* *
64153338 GGACTGTCATGCCAAACTGCCCTACCAAA
308 GGACTGTCATGCCAAACTACCCAACCAAA
64153367 ATTTGATTGA
Statistics
Matches: 3648, Mismatches: 677, Indels: 663
0.73 0.14 0.13
Matches are distributed among these distances:
349 2 0.00
350 13 0.00
354 3 0.00
356 1 0.00
358 1 0.00
359 1 0.00
360 4 0.00
363 55 0.02
364 66 0.02
367 2 0.00
369 1 0.00
371 1 0.00
372 1 0.00
376 124 0.03
377 406 0.11
378 10 0.00
380 6 0.00
381 5 0.00
382 3 0.00
384 6 0.00
385 14 0.00
386 31 0.01
387 173 0.05
388 269 0.07
389 1064 0.29
390 351 0.10
391 109 0.03
392 9 0.00
393 12 0.00
394 99 0.03
395 9 0.00
396 11 0.00
397 54 0.01
398 78 0.02
399 104 0.03
400 57 0.02
401 35 0.01
402 71 0.02
403 5 0.00
404 2 0.00
405 7 0.00
406 2 0.00
407 4 0.00
411 6 0.00
412 6 0.00
413 9 0.00
414 9 0.00
415 6 0.00
416 13 0.00
417 5 0.00
418 3 0.00
419 12 0.00
420 4 0.00
421 5 0.00
422 1 0.00
423 1 0.00
424 2 0.00
425 3 0.00
426 1 0.00
427 11 0.00
428 3 0.00
429 6 0.00
430 12 0.00
431 9 0.00
432 1 0.00
433 2 0.00
434 1 0.00
435 8 0.00
436 6 0.00
437 5 0.00
438 5 0.00
439 3 0.00
440 2 0.00
441 7 0.00
442 6 0.00
445 2 0.00
446 66 0.02
447 28 0.01
451 5 0.00
452 87 0.02
453 6 0.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (389 bp):
ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTTACCTACCAAAATTGATTGAATGCAAAA
TTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAG
CCAAACTGTCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAA
TTGGGACGAAATGGACTGTCATGCCAAACTACTAACAAAATACCCTAGCCAAAATTTGATTGAAT
GCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACT
ACCCAACCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAAC
Found at i:64150477 original size:101 final size:101
Alignment explanation
Indices: 64150302--64153549 Score: 1795
Period size: 101 Copynumber: 32.8 Consensus size: 101
64150292 TACCAAAATC
* * *
64150302 GATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCAA
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* * * *
64150367 GTCAAACTACCCAGCCCAACTGTCGTGCCAATATTT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * ** ** * * *
64150403 GATTGAATACAATATTAAAAGTTCATTTCTATAAACATTCAAATTAAGATGAAATGGACTATTAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* * *
64150468 GCCAAACTACTCAGCCAAACAGCCCTACCAATATTT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * * *
64150504 GATTGAATGCAAAATTAAGAGGATATTTATATAAGCATTCAAA-TGGGACAAAATGGACTG-CAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* * * *** * *
64150567 GCTAAACTATCAAATGAAATTGCCCTGCCAAAATTT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * *
64150603 AATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGATGAAATGGAATGTCAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* *
64150668 GCCAAACT----A-CC-TA--G--CT---AAAATTT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * * * * *
64150691 GATTGTATGCAAAATTAAAAGGAA-ATTTTTGT-AA-GTGTCAAAATTGGGACGAAATAGACTAT
1 GATTGAATGCAAAATTAAGA-GAACATTTCTATAAACAT-TC-AAATTGGGACGAAATGGACTGT
* * * *
64150753 CATGCCAAACTACCTAGCCAAACTGGCCTACAAATATTT
63 CATGCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * *
64150792 GATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGGATGAAATGAACTATCAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
** **
64150857 GCCAAACTACCTGGCCAAACAACCCTGCCAATATTT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * * * * *
64150893 GACTGAATGCAACATTAAGAGAATATTTCTATCAGCATTCAAATTGGGACAAAATAGACTGTCAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* * ***
64150958 GCCAAACTATCCAACCAAACTGTTGTGCCGAA-ATTT
66 GCCAAACTACCCAGCCAAACTGCCCTGCC-AATATTT
* * * * *
64150994 GATTGAATGTAAAATTAAGAGAATATTTCTATAAACATTCAAATTAGGAAGAAATGAACTGTCAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* *
64151059 GCCAAACT-----TCC--A-T---AT--CAA-ATTT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * ** * *
64151081 GATTGAATGCAAAATTAAGAGGACATTTCAATAGGCACTCAAATTTGGACGAAATGGACTGTCAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* *** ** *
64151146 GCCGAACTACCCAGCCAAACTGTGTTGTTAAAATTT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * ** * * *
64151182 GATTAAATGCAAAATTAAGAGAA-ATTTCTGTACGCATTCAAATCGGGACGAAATGTACTGTAAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* * * * * *
64151246 GGCAAACTATCCAGCCAAACTGGCCTACCAAAATTA
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * * * *
64151282 GATTGAATGTAAAATTAAGA-AGACATTTCTATAAGCATTAAAATTGGGACAAAATTGACTGTTA
1 GATTGAATGCAAAATTAAGAGA-ACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCA
* * *
64151346 TGCCAAACTACCTAGCAAAACTACCCTGCCTAA-ATTT
65 TGCCAAACTACCCAGCCAAACTGCCCTGCC-AATATTT
* * *
64151383 GATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTAAAATTAGGACGAAATGGACTGTCAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* * * * *
64151448 GTCAATCTACCCAGCGAAACTGCCCTACCAA-AATT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * *** * *
64151483 GATGGAATGCAAAATT-A-AG-ATATTTCTATATGTATTTAAATTGGGACGAAATGGATTGTCAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* * * *
64151545 GTCAAACTACCCAGCCAATCTGTCCTACCAATATTT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * * * *
64151581 GATTAAATGCAAAATTAAGAGGACATTTCTATAAAAATTCAAATTAGGATGAAATGTACTGTCAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* * * *
64151646 GCCAAACTA--C--CC--ATTGCCTTGCCAAAATTG
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * *
64151676 GATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAACGGACTGTCAG
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* * * * ** *
64151741 GCCAAACTACCCAGTCAACCTTCTCTTTCAAAATTT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * *
64151777 GATTGAAATTTTTCCAAATTTGAATGCTTATAGAA-ATTTCCTCTTAATTTTGATTTCAATCAAA
1 GATTG-AA----TGCAAAATT-AA-G-----AGAACATTT-CT-ATAA-----A---CATTCAAA
* * * * * * *
64151841 TTTTGAAAGAGAAGGTTGACTGGGT-AGTTTGGCCTGACAGTCCGTTTCGTCCAAACTACCCAAG
44 -TTGGGACGA-AA--TGGACT--GTCA---T-GCC--A-A--AC--TAC--CCAG----------
* * * *
64151905 CCAAACTACCCTACCAAAATTG
80 CCAAACTGCCCTGCCAATATTT
* * * * ** *
64151927 GATTGAATTCAAATTTAACAAAACATTTCTATAAGTATTCAAATTGGGGCGAAATGGACTGTCAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* * * * *
64151992 GCCAAATTACCTAACCAAATTGCCCTGCCAA-AATT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * * * *
64152027 GATTGAATGTAAAATTAAGAGAATATTTCTATAAGCATTCAAATTGGAATGAAATGGGA-TGCCA
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAAT-GGACTGTCA
* ** * *
64152091 TGCCAAACTACCCAGCCAAACTACCCAACCAAAAATT
65 TGCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * **
64152128 GATTGAATGCAAAATTAAGAGGACAGTTT-TATAAGA-GTTTAAATTGGGATAAAATGGA-TAGT
1 GATTGAATGCAAAATTAAGAGAACA-TTTCTATAA-ACATTCAAATTGGGACGAAATGGACT-GT
* * ** * * * * *
64152190 CATTCCAAAATGTCTAGCCAAATTTCCTTGCCAAAATTT
63 CATGCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * * ** *
64152229 GATTAAATGCAAAATTAAGAGGATATTTCGATAAACATTCAAATTGGGACGAAATAAACTGCCAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* ** *
64152294 GCCAAACTACCCAGCAAAACTTACCTGCCAA-AATT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* ** *
64152329 GATTGAATGCAAAATTAAGAGGACATTTCTATAAGTATTCAAATTGGGACAAAATGGAC--T-AT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
*** *
64152391 --C--A-T-----GCCAAACTGTTTTGCCAAAATTT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * * * * *
64152417 GACTGACTGCAAAATTAAGATAACATTTCTATAAGA-GTTCAAATTTGGAAGAAATGGACGGTCA
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAA-ACATTCAAATTGGGACGAAATGGACTGTCA
*
64152481 TGCCAAACTA--C--CC-AA--------CCAAAATTT
65 TGCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * *
64152505 GATTGAATGCAAAATTAAGAGGACATTT-TAATAAACTTTCAAATTGGGACAAAATGGATTGTCA
1 GATTGAATGCAAAATTAAGAGAACATTTCT-ATAAACATTCAAATTGGGACGAAATGGACTGTCA
*
64152569 TGCCAAACT------------T-CCCTGCCAA-AATT
65 TGCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * *
64152592 GATTGAATGCAAAATTAAGAAG-ACATTTCAATAAGCATTCAAATTGGGACGAAATGGACTATCA
1 GATTGAATGCAAAATTAAG-AGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCA
* * *
64152656 AGCCAAACTACCCAACCAAACTGCCTTGCCAATATTT
65 TGCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * * * * **
64152693 G-TTAAAATGTAATATTAAAAGGACATTTCTATAAACATTCAAATTGGGACAAAATGGACTACCA
1 GATT-GAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCA
* * *
64152757 TGCCAAACTACCTAGCCAAACAGCCCTTCCAATATTT
65 TGCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * * * *
64152794 GATTAAATGCAAAATTAAGAGGATATTTTTATAAGCATTCAAATTGGGACAAAATGGACTGTCAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* * * *
64152859 GGCAAACTATCCAACCAAACTGCCCTGCCAAAATTT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * * *
64152895 GATTGAATGCAAAATTAAGAGGACATTTCAATAAACTTTCAAATTGGGACAAAATAGACTGTCAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* *
64152960 GCCAAACT------------T-CCCTACCAA-AATT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * * ** * * * * *
64152982 GATTGAATGCAAAATAAAAG-GACA-TTTCTTTA-AACA-TTCAAATTGGGACGAAATGGACT-G
1 GATTGAATGCAAAAT-TAAGAGA-ACATT-TCTATAA-ACATTCAAATTGG--G--ACGAAATGG
* * * ** * * * * *
64153042 TCAAGCCA-AACTACCCAGCCA---A-ACTGCCTTGCCAATATTT
58 AC-TGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * * * * * **
64153082 GATTGAATGTAATATTAAAAGGACATTTCTATAAACATTCAAATTGGGATGGAATAGACTACCAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* *
64153147 GCCAAACTACCCAGCCAAACAGCCCTTCCAATATTT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * * * *
64153183 GATTAAATGCAAAATTAAGAGGATATTTTTATAAATATTCAAATTGGGACAAAATGGACTGTCAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* * * *
64153248 GCTAAACTATCCAGCCAAACTGCCCTGCTAAAATTT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * **
64153284 GATTGAATGCAAAATTAAAAGAATATTTCTATAAACATTCAAATT-GGAAAAAATGGACTG---T
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* *
64153345 --C--A-T-----GCCAAACTGCCCTACCAAAATTT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * *** * * * * *
64153371 GATTGAATGAAAAATTAAGAGAACATTTCAATGGGCACTCAAATTTGGATGAAATGGACTATAAT
1 GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
* * * *
64153436 GCCGAACTACACAGCCAAACTACCCTGCCAAAATTT
66 GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
* * * * * * * *
64153472 GATTGAATACAGAATTAAGAGGACATCTT-TGTAAGCTTTCAAATT-GGACGAAATGGATTTGCC
1 GATTGAATGCAAAATTAAGAGAACAT-TTCTATAAACATTCAAATTGGGACGAAATGGA-CTGTC
64153535 ATGCCAAACTACCCA
64 ATGCCAAACTACCCA
64153550 ATCAAACTAC
Statistics
Matches: 2432, Mismatches: 520, Indels: 390
0.73 0.16 0.12
Matches are distributed among these distances:
86 1 0.00
87 240 0.10
88 213 0.09
89 5 0.00
90 7 0.00
91 11 0.00
92 5 0.00
93 8 0.00
94 3 0.00
95 82 0.03
96 16 0.01
97 81 0.03
98 24 0.01
99 85 0.03
100 333 0.14
101 1168 0.48
102 18 0.01
103 1 0.00
106 7 0.00
107 2 0.00
108 1 0.00
111 3 0.00
112 4 0.00
113 7 0.00
114 3 0.00
117 1 0.00
118 1 0.00
120 3 0.00
121 1 0.00
122 7 0.00
123 8 0.00
124 3 0.00
125 5 0.00
126 4 0.00
127 3 0.00
128 7 0.00
129 6 0.00
131 3 0.00
133 1 0.00
134 1 0.00
136 1 0.00
137 3 0.00
138 7 0.00
139 4 0.00
140 3 0.00
144 2 0.00
145 8 0.00
149 2 0.00
150 20 0.01
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.27
Consensus pattern (101 bp):
GATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCAT
GCCAAACTACCCAGCCAAACTGCCCTGCCAATATTT
Found at i:64151135 original size:87 final size:87
Alignment explanation
Indices: 64150988--64151153 Score: 233
Period size: 87 Copynumber: 1.9 Consensus size: 87
64150978 TGTTGTGCCG
* * * *
64150988 AAATTTGATTGAATGTAAAATTAAGAGAATATTTCTATAAACATTCAAATTAGGAAGAAATGAAC
1 AAATTTGATTGAATGCAAAATTAAGAGAACATTTCAATAAACACTCAAATTAGGAAGAAATGAAC
64151053 TGTCATGCCAAACTTCCATATC
66 TGTCATGCCAAACTTCCATATC
* ** * * *
64151075 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCAATAGGCACTCAAATTTGGACGAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGAGAACATTTCAATAAACACTCAAATTAGGAAGAAATGAAC
*
64151140 TGTCATGCCGAACT
66 TGTCATGCCAAACT
64151154 ACCCAGCCAA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
87 68 1.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (87 bp):
AAATTTGATTGAATGCAAAATTAAGAGAACATTTCAATAAACACTCAAATTAGGAAGAAATGAAC
TGTCATGCCAAACTTCCATATC
Found at i:64152110 original size:13 final size:13
Alignment explanation
Indices: 64152092--64152123 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
64152082 GGGATGCCAT
64152092 GCCAAACTACCCA
1 GCCAAACTACCCA
64152105 GCCAAACTACCCA
1 GCCAAACTACCCA
*
64152118 ACCAAA
1 GCCAAA
64152124 AATTGATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.44, C:0.44, G:0.06, T:0.06
Consensus pattern (13 bp):
GCCAAACTACCCA
Found at i:64152435 original size:188 final size:188
Alignment explanation
Indices: 64152206--64153497 Score: 1163
Period size: 188 Copynumber: 6.8 Consensus size: 188
64152196 AAAATGTCTA
* * * * *
64152206 GCCAAATTTCCTTGCCAAAATTTGATTAAATGCAAAATTAAGAGGATATTTCGATAAACATTCAA
1 GCCAAACTGCCTTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAA
** * *
64152271 ATTGGGACGAAATAAACTGCCATGCCAAACTACCCAGCAAAACTTACCTGCCAAAA-TTGATTGA
66 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAAC-TACCTGCCAAAATTTGATTGA
*
64152335 ATGCAAAATTAAGAGGACATTTCTATAAGTATTCAAATTGGGACAAAATGGACTATCAT
130 ATGCAAAATTAAGAGGACATTTCTATAAATATTCAAATTGGGACAAAATGGACTATCAT
** * * ** *
64152394 GCCAAACTGTTTTGCCAAAATTTGACTGACTGCAAAATTAAGATAACATTTCTATAAGA-GTTCA
1 GCCAAACTGCCTTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAA-ACATTCA
* * *
64152458 AATTTGGAAGAAATGGACGGTCATGCCAAACTA--C--CC--A--A----CCAAAATTTGATTGA
65 AATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTGCCAAAATTTGATTGA
* *
64152511 ATGCAAAATTAAGAGGACATTT-TAATAAACT-TTCAAATTGGGACAAAATGGATTGTCAT
130 ATGCAAAATTAAGAGGACATTTCT-ATAAA-TATTCAAATTGGGACAAAATGGACTATCAT
* * * * *
64152570 GCCAAACTTCCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAAGACATTTCAATAAGCATTCAA
1 GCCAAACTGCCTTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAA
* * * * * *
64152634 ATTGGGACGAAATGGACTATCAAGCCAAACTACCCAACCAAACTGCCTTGCCAATATTTG-TTAA
66 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACC-TGCCAAAATTTGATT-G
* * * * *
64152698 AATGTAATATTAAAAGGACATTTCTATAAACATTCAAATTGGGACAAAATGGACTACCAT
129 AATGCAAAATTAAGAGGACATTTCTATAAATATTCAAATTGGGACAAAATGGACTATCAT
* * * * *
64152758 GCCAAACTACCTAGCCAAACAGCCCTTCCAATATTTGATTAAATGCAAAATTAAGAGGATATTTT
1 GCCAAACTGCCTTG-C---CA--------AA-ATTTGATTGAATGCAAAATTAAGAGGACATTTC
* * * * * *
64152823 TATAAGCATTCAAATTGGGACAAAATGGACTGTCATGGCAAACTATCCAACCAAACTGCCCTGCC
53 TATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACT-ACCTGCC
* *
64152888 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCAATAAACT-TTCAAATTGGGACAAAATAG
117 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAA-TATTCAAATTGGGACAAAATGG
*
64152952 ACTGTCAT
181 ACTATCAT
* * * * *
64152960 GCCAAACTTCCCTACCAAAA-TTGATTGAATGCAAAA-TAAAAGGACATTTCTTTAAACATTCAA
1 GCCAAACTGCCTTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAA
* * *
64153023 ATTGGGACGAAATGGACTGTCAAGCCAAACTACCCAGCCAAACTGCCTTGCCAATATTTGATTGA
66 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACC-TGCCAAAATTTGATTGA
* * * * *** *
64153088 ATGTAATATTAAAAGGACATTTCTATAAACATTCAAATTGGGATGGAATAGACTACCATGCCAAA
130 ATGCAAAATTAAGAGGACATTTCTATAAATATTCAAATTGGGACAAAATGGACT---AT--C--A
64153153 CT
188 -T
* * * * * *
64153155 ACCCAGCCAAACAGCCCTT-CCAATATTTGATTAAATGCAAAATTAAGAGGATATTTTTATAAAT
1 -----GCCAAACTG-CCTTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAAC
* * * * *
64153219 ATTCAAATTGGGACAAAATGGACTGTCATGCTAAACTATCCAGCCAAACTGCCCTGCTAAAATTT
60 ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACT-ACCTGCCAAAATTT
* * * * * *
64153284 GATTGAATGCAAAATTAAAAGAATATTTCTATAAACATTCAAATT-GGAAAAAATGGACTGTCAT
124 GATTGAATGCAAAATTAAGAGGACATTTCTATAAATATTCAAATTGGGACAAAATGGACTATCAT
* * * * * *** *
64153348 GCCAAACTGCCCTACCAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCAATGGGCACTCAA
1 GCCAAACTGCCTTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAA
* * * * * *
64153413 ATTTGGATGAAATGGACTATAATGCCGAACTACACAGCCAAACTACCCTGCCAAAATTTGATTGA
66 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTA-CCTGCCAAAATTTGATTGA
* *
64153478 ATACAGAATTAAGAGGACAT
130 ATGCAAAATTAAGAGGACAT
64153498 CTTTGTAAGC
Statistics
Matches: 891, Mismatches: 154, Indels: 118
0.77 0.13 0.10
Matches are distributed among these distances:
175 70 0.08
176 76 0.09
177 2 0.00
179 3 0.00
181 1 0.00
182 1 0.00
184 1 0.00
186 3 0.00
187 127 0.14
188 277 0.31
189 4 0.00
190 3 0.00
192 3 0.00
193 1 0.00
194 2 0.00
195 1 0.00
196 1 0.00
198 3 0.00
200 14 0.02
201 30 0.03
202 262 0.29
203 6 0.01
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.26
Consensus pattern (188 bp):
GCCAAACTGCCTTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAA
ATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTGCCAAAATTTGATTGAA
TGCAAAATTAAGAGGACATTTCTATAAATATTCAAATTGGGACAAAATGGACTATCAT
Found at i:64152633 original size:87 final size:88
Alignment explanation
Indices: 64152310--64152664 Score: 425
Period size: 88 Copynumber: 4.1 Consensus size: 88
64152300 CTACCCAGCA
* * * *
64152310 AAACTTACCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGTATTCAAATT
1 AAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCAATAAGCATTCAAATT
64152374 GGGACAAAATGGACTATCATGCC
66 GGGACAAAATGGACTATCATGCC
** * * *
64152397 AAACTGT-TTTGCCAAAATTTGACTGACTGCAAAATTAAGATA-ACATTTCTATAAG-AGTTCAA
1 AAACT-TCCCTGCCAAAATTTGATTGAATGCAAAATTAAGA-AGACATTTCAATAAGCA-TTCAA
* **
64152459 ATTTGGA-AGAAATGGACGGTCATGCC
63 ATTGGGACA-AAATGGACTATCATGCC
* ** * * * *
64152485 AAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTAATAAACTTTCAAATT
1 AAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCAATAAGCATTCAAATT
* *
64152550 GGGACAAAATGGATTGTCATGCC
66 GGGACAAAATGGACTATCATGCC
64152573 AAACTTCCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAAGACATTTCAATAAGCATTCAAATT
1 AAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCAATAAGCATTCAAATT
* *
64152637 GGGACGAAATGGACTATCAAGCC
66 GGGACAAAATGGACTATCATGCC
64152660 AAACT
1 AAACT
64152665 ACCCAACCAA
Statistics
Matches: 225, Mismatches: 34, Indels: 18
0.81 0.12 0.06
Matches are distributed among these distances:
87 82 0.36
88 142 0.63
89 1 0.00
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (88 bp):
AAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCAATAAGCATTCAAATT
GGGACAAAATGGACTATCATGCC
Found at i:64152995 original size:565 final size:564
Alignment explanation
Indices: 64152006--64153064 Score: 1350
Period size: 565 Copynumber: 1.9 Consensus size: 564
64151996 AATTACCTAA
* * *
64152006 CCAAATTGCCCTGCCAAAATTGATTGAATGTAAAATTAAGAGAATATTTCTATAAGCATTCAAAT
1 CCAAATTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCAATAAGCATTCAAAT
* * * * *
64152071 TGGAATGAAATGGGATGCCATGCCAAACTACCCAGCCAAACTACCCAACCAAAAATTGATTGAAT
66 TGGAACGAAATGGGATACCAAGCCAAACTACCCAACCAAACTACCCAACCAAAAATTGATTAAAT
* * * * * *
64152136 GCAAAATTAAGAGGACAGTTTTATAAGAGTTTAAATTGGGATAAAATGGATAGTCATTCCAAAAT
131 GCAAAATTAAAAGGACAGTTTTATAAGAATTCAAATTGGGACAAAATGGATAGCCATGCCAAAAT
** ***
64152201 GTCTAGCCAAATTTCCTTGCCAAAATTTGATTAAATGCAAAATTAAGAGGATATTTCGATAAACA
196 ACCTAGCCAAAAGCCCTTGCCAAAATTTGATTAAATGCAAAATTAAGAGGATATTTCGATAAACA
* * *
64152266 TTCAAATTGGGACGAAATAAACTGCCATGCCAAACTACCCAGCAAAACTTACCTGCCAAAATTGA
261 TTCAAATTGGGACAAAATAAACTGCCATGCCAAACTACCCAACAAAACTGACCTGCCAAAATTGA
* * *
64152331 TTGAATGCAAAATTAAGAGGACATTTCTATAAGTATTCAAATTGGGACAAAATGGACTATCATGC
326 TTGAATGCAAAATTAAGAGGACATTTCAATAACTATTCAAATTGGGACAAAATAGACTATCATGC
** * * * * *
64152396 CAAACTGTTTTGCCAAAATTTGACTGACTGCAAAATTAAGATAACATTTCTATAAGA-GTTCAAA
391 CAAACTGTCCTACCAAAATTTGACTGAATGCAAAA-TAAAAGAACATTTCTATAA-ACATTCAAA
* *
64152460 TTTGGAAGAAATGGACGGTCATGCCAAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAGA
454 TTGGGAAGAAATGGACGGTCAAGCCAAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAGA
64152525 GGACATTTTAATAAACTTTCAAATTGGGACAAAATGGATTGTCATG
519 GGACATTTTAATAAACTTTCAAATTGGGACAAAATGGATTGTCATG
64152571 CCAAACTT-CCCTGCCAAAATTGATTGAATGCAAAATTAAGA-AGACATTTCAATAAGCATTCAA
1 CCAAA-TTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGA-ACATTTCAATAAGCATTCAA
* * * *** * *
64152634 ATTGGGACGAAAT-GGACTATCAAGCCAAACTACCCAACCAAACTGCCTTGCCAATATTTG-TTA
64 ATTGGAACGAAATGGGA-TACCAAGCCAAACTACCCAACCAAACTACCCAACCAAAAATTGATT-
* *
64152697 AAATGTAATATTAAAAGGACA-TTTCTATAA-ACATTCAAATTGGGACAAAATGGACTA-CCATG
127 AAATGCAAAATTAAAAGGACAGTTT-TATAAGA-ATTCAAATTGGGACAAAATGGA-TAGCCATG
* * *
64152759 CCAAACTACCTAGCCAAACAGCCCTT-CCAATATTTGATTAAATGCAAAATTAAGAGGATATTTT
189 CCAAAATACCTAGCCAAA-AGCCCTTGCCAAAATTTGATTAAATGCAAAATTAAGAGGATATTTC
* * ** * * * * *
64152823 TATAAGCATTCAAATTGGGACAAAATGGACTGTCATGGCAAACTATCCAACCAAACTGCCCTGCC
253 GATAAACATTCAAATTGGGACAAAATAAACTGCCATGCCAAACTACCCAACAAAACTGACCTGCC
64152888 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCAATAAACT-TTCAAATTGGGACAAAATAG
318 AAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCAAT-AACTATTCAAATTGGGACAAAATAG
* * * *
64152952 ACTGTCATGCCAAACT-TCCCTACCAAAA-TTGATTGAATGCAAAATAAAAGGACATTTCTTTAA
381 ACTATCATGCCAAACTGT-CCTACCAAAATTTGACTGAATGCAAAATAAAAGAACATTTCTATAA
* * *
64153015 ACATTCAAATTGGGACGAAATGGACTGTCAAGCCAAACTACCCAGCCAAA
445 ACATTCAAATTGGGAAGAAATGGACGGTCAAGCCAAACTACCCAACCAAA
64153065 CTGCCTTGCC
Statistics
Matches: 419, Mismatches: 63, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
563 1 0.00
564 67 0.16
565 266 0.63
566 82 0.20
567 3 0.01
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (564 bp):
CCAAATTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCAATAAGCATTCAAAT
TGGAACGAAATGGGATACCAAGCCAAACTACCCAACCAAACTACCCAACCAAAAATTGATTAAAT
GCAAAATTAAAAGGACAGTTTTATAAGAATTCAAATTGGGACAAAATGGATAGCCATGCCAAAAT
ACCTAGCCAAAAGCCCTTGCCAAAATTTGATTAAATGCAAAATTAAGAGGATATTTCGATAAACA
TTCAAATTGGGACAAAATAAACTGCCATGCCAAACTACCCAACAAAACTGACCTGCCAAAATTGA
TTGAATGCAAAATTAAGAGGACATTTCAATAACTATTCAAATTGGGACAAAATAGACTATCATGC
CAAACTGTCCTACCAAAATTTGACTGAATGCAAAATAAAAGAACATTTCTATAAACATTCAAATT
GGGAAGAAATGGACGGTCAAGCCAAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAGAGG
ACATTTTAATAAACTTTCAAATTGGGACAAAATGGATTGTCATG
Found at i:64153022 original size:86 final size:88
Alignment explanation
Indices: 64152873--64153053 Score: 267
Period size: 86 Copynumber: 2.1 Consensus size: 88
64152863 AACTATCCAA
* * *
64152873 CCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCAATAAACTTTCAAA
1 CCAAACTGCCCTACCAAAATTTGATTGAATGCAAAATTAAAAGGACATTTCAATAAACATTCAAA
*
64152938 TTGGGACAAAATAGACTGTCATG
66 TTGGGACAAAATAGACTGTCAAG
* **
64152961 CCAAACTTCCCTACCAAAA-TTGATTGAATGCAAAA-TAAAAGGACATTTCTTTAAACATTCAAA
1 CCAAACTGCCCTACCAAAATTTGATTGAATGCAAAATTAAAAGGACATTTCAATAAACATTCAAA
* *
64153024 TTGGGACGAAATGGACTGTCAAG
66 TTGGGACAAAATAGACTGTCAAG
64153047 CCAAACT
1 CCAAACT
64153054 ACCCAGCCAA
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
86 51 0.61
87 16 0.19
88 17 0.20
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.25
Consensus pattern (88 bp):
CCAAACTGCCCTACCAAAATTTGATTGAATGCAAAATTAAAAGGACATTTCAATAAACATTCAAA
TTGGGACAAAATAGACTGTCAAG
Found at i:64153375 original size:389 final size:390
Alignment explanation
Indices: 64151891--64153549 Score: 1553
Period size: 389 Copynumber: 4.3 Consensus size: 390
64151881 TCCGTTTCGT
* * * * * *
64151891 CCAAACTACCCAAGCCAAACTACCCTACCAAAATTGGATTGAAT-TCAA-ATTTAACAA-AACAT
1 CCAAACTACCC-AGCCAAACTGCCTTGCCAATATTTGATTGAATGT-AATA-TTAA-AAGGACAT
** * * * ** * * * **
64151953 TTCTATAAGTATTCAAATTGGGGCGAAATGGACTGTCATGCCAAATTACCTAACCAAATTGCCCT
62 TTCTATAAACATTCAAATTGGGACAAAATAGACTACCATGCCAAACTACCCAGCCAAACAGCCCT
* * * * * * * * **
64152018 GCCAA-AATTGATTGAATGTAAAATTAAGAGAATATTTCTATAAGCATTCAAATTGGAATGAAAT
127 TCCAATATTTGATTAAATGCAAAATTAAGAGGATATTTTTATAAACATTCAAATTGGGACAAAAT
* * * * * ** *
64152082 GGGA-TGCCATGCCAAACTACCCAGCCAAACTACCCAACCAAAAATTGATTGAATGCAAAATTAA
192 -GGACTGTCATGGCAAACTATCCAACCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAA
* *
64152146 GAGGACAGTTT-TATAAGAGTTT-AAATTGGGATAAAATGGA-TAGTCATTCCAAAATGTCTAGC
256 GAGGACA-TTTCTATAA-ACTTTCAAATTGGGACAAAATGGACT-G----T-C---A----T-GC
* * * * * * * *
64152208 CAAATTTCCTTGCCAAAATTTGATTAAATGCAAAATTAAGAGGATATTTCGATAAACATTCAAAT
305 CAAACTTCCCTACCAAAA-TTGATTGAATGCAAAATTAAAAGGACATTTCAATAAGCATTCAAAT
** ** *
64152273 TGGGACGAAATAAACTGCCATG
369 TGGGACGAAATGGACTATCAAG
* * * * * *
64152295 CCAAACTACCCAGCAAAACTTACC-TGCCAA-AATTGATTGAATGCAAAATTAAGAGGACATTTC
1 CCAAACTACCCAGCCAAAC-TGCCTTGCCAATATTTGATTGAATGTAATATTAAAAGGACATTTC
** * * **
64152358 TATAAGTATTCAAATTGGGACAAAATGGACT---AT--C--A-T-----GCCAAACTG-TTTTGC
65 TATAAACATTCAAATTGGGACAAAATAGACTACCATGCCAAACTACCCAGCCAAACAGCCCTT-C
* * * * ** * * * *
64152409 CAAAATTTGACTGACTGCAAAATTAAGATAACATTTCTATAAGA-GTTCAAATTTGGA-AGAAAT
129 CAATATTTGATTAAATGCAAAATTAAGAGGATATTTTTATAA-ACATTCAAATTGGGACA-AAAT
* *
64152472 GGACGGTCATGCCAAACTA--C--CC-AA--------CCAAAATTTGATTGAATGCAAAATTAAG
192 GGACTGTCATGGCAAACTATCCAACCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAG
* *
64152524 AGGACATTT-TAATAAACTTTCAAATTGGGACAAAATGGATTGTCATGCCAAACTTCCCTGCCAA
257 AGGACATTTCT-ATAAACTTTCAAATTGGGACAAAATGGACTGTCATGCCAAACTTCCCTACCAA
64152588 AATTGATTGAATGCAAAATTAAGAA-GACATTTCAATAAGCATTCAAATTGGGACGAAATGGACT
321 AATTGATTGAATGCAAAATTAA-AAGGACATTTCAATAAGCATTCAAATTGGGACGAAATGGACT
64152652 ATCAAG
385 ATCAAG
* *
64152658 CCAAACTACCCAACCAAACTGCCTTGCCAATATTTG-TTAAAATGTAATATTAAAAGGACATTTC
1 CCAAACTACCCAGCCAAACTGCCTTGCCAATATTTGATT-GAATGTAATATTAAAAGGACATTTC
* *
64152722 TATAAACATTCAAATTGGGACAAAATGGACTACCATGCCAAACTACCTAGCCAAACAGCCCTTCC
65 TATAAACATTCAAATTGGGACAAAATAGACTACCATGCCAAACTACCCAGCCAAACAGCCCTTCC
*
64152787 AATATTTGATTAAATGCAAAATTAAGAGGATATTTTTATAAGCATTCAAATTGGGACAAAATGGA
130 AATATTTGATTAAATGCAAAATTAAGAGGATATTTTTATAAACATTCAAATTGGGACAAAATGGA
64152852 CTGTCATGGCAAACTATCCAACCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGG
195 CTGTCATGGCAAACTATCCAACCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGG
* *
64152917 ACATTTCAATAAACTTTCAAATTGGGACAAAATAGACTGTCATGCCAAACTTCCCTACCAAAATT
260 ACATTTCTATAAACTTTCAAATTGGGACAAAATGGACTGTCATGCCAAACTTCCCTACCAAAATT
** * *
64152982 GATTGAATGCAAAA-TAAAAGGACATTTCTTTAAACATTCAAATTGGGACGAAATGGACTGTCAA
325 GATTGAATGCAAAATTAAAAGGACATTTCAATAAGCATTCAAATTGGGACGAAATGGACTATCAA
64153046 G
390 G
64153047 CCAAACTACCCAGCCAAACTGCCTTGCCAATATTTGATTGAATGTAATATTAAAAGGACATTTCT
1 CCAAACTACCCAGCCAAACTGCCTTGCCAATATTTGATTGAATGTAATATTAAAAGGACATTTCT
***
64153112 ATAAACATTCAAATTGGGATGGAATAGACTACCATGCCAAACTACCCAGCCAAACAGCCCTTCCA
66 ATAAACATTCAAATTGGGACAAAATAGACTACCATGCCAAACTACCCAGCCAAACAGCCCTTCCA
*
64153177 ATATTTGATTAAATGCAAAATTAAGAGGATATTTTTATAAATATTCAAATTGGGACAAAATGGAC
131 ATATTTGATTAAATGCAAAATTAAGAGGATATTTTTATAAACATTCAAATTGGGACAAAATGGAC
* * * *
64153242 TGTCAT-GCTAAACTATCCAGCCAAACTGCCCTGCTAAAATTTGATTGAATGCAAAATTAAAAGA
196 TGTCATGGC-AAACTATCCAACCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGG
* * * *
64153306 ATATTTCTATAAACATTCAAATT-GGAAAAAATGGACTGTCATGCCAAACTGCCCTACCAAAATT
260 ACATTTCTATAAACTTTCAAATTGGGACAAAATGGACTGTCATGCCAAACTTCCCTACCAAAA-T
* * * ** * * *
64153370 TGATTGAATGAAAAATTAAGAGAACATTTCAATGGGCACTCAAATTTGGATGAAATGGACTAT-A
324 TGATTGAATGCAAAATTAAAAGGACATTTCAATAAGCATTCAAATTGGGACGAAATGGACTATCA
64153434 ATG
389 A-G
* * * * * ** *
64153437 CCGAACTACACAGCCAAACTACCCTGCCAAAATTTGATTGAATACAGA-ATTAAGAGGACATCTT
1 CCAAACTACCCAGCCAAACTGCCTTGCCAATATTTGATTGAATGTA-ATATTAAAAGGACAT-TT
* * * * * * *
64153501 -TGTAAGCTTTCAAATT-GGACGAAATGGATTTGCCATGCCAAACTACCCA
64 CTATAAACATTCAAATTGGGACAAAATAGA-CTACCATGCCAAACTACCCA
64153550 ATCAAACTAC
Statistics
Matches: 1077, Mismatches: 123, Indels: 124
0.81 0.09 0.09
Matches are distributed among these distances:
362 3 0.00
363 81 0.08
364 73 0.07
365 1 0.00
367 2 0.00
369 2 0.00
371 1 0.00
372 2 0.00
373 1 0.00
376 8 0.01
377 130 0.12
378 4 0.00
379 1 0.00
381 2 0.00
382 2 0.00
385 2 0.00
386 2 0.00
388 42 0.04
389 344 0.32
390 285 0.26
391 3 0.00
394 1 0.00
395 1 0.00
397 1 0.00
399 2 0.00
401 1 0.00
402 52 0.05
403 13 0.01
404 15 0.01
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (390 bp):
CCAAACTACCCAGCCAAACTGCCTTGCCAATATTTGATTGAATGTAATATTAAAAGGACATTTCT
ATAAACATTCAAATTGGGACAAAATAGACTACCATGCCAAACTACCCAGCCAAACAGCCCTTCCA
ATATTTGATTAAATGCAAAATTAAGAGGATATTTTTATAAACATTCAAATTGGGACAAAATGGAC
TGTCATGGCAAACTATCCAACCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGA
CATTTCTATAAACTTTCAAATTGGGACAAAATGGACTGTCATGCCAAACTTCCCTACCAAAATTG
ATTGAATGCAAAATTAAAAGGACATTTCAATAAGCATTCAAATTGGGACGAAATGGACTATCAAG
Found at i:64153413 original size:87 final size:88
Alignment explanation
Indices: 64153261--64153430 Score: 225
Period size: 87 Copynumber: 1.9 Consensus size: 88
64153251 AAACTATCCA
* * * * * *
64153261 GCCAAACTGCCCTGCTAAAATTTGATTGAATGCAAAATTAAAAGAATATTTCTATAAACATTCAA
1 GCCAAACTGCCCTACCAAAATTTGATTGAATGAAAAATTAAAAGAACATTTCAATAAACACTCAA
64153326 A-TTGGAAAAAATGGACTGTCAT
66 ATTTGGAAAAAATGGACTGTCAT
* ***
64153348 GCCAAACTGCCCTACCAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCAATGGGCACTCAA
1 GCCAAACTGCCCTACCAAAATTTGATTGAATGAAAAATTAAAAGAACATTTCAATAAACACTCAA
**
64153413 ATTTGGATGAAATGGACT
66 ATTTGGAAAAAATGGACT
64153431 ATAATGCCGA
Statistics
Matches: 70, Mismatches: 12, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
87 56 0.80
88 14 0.20
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (88 bp):
GCCAAACTGCCCTACCAAAATTTGATTGAATGAAAAATTAAAAGAACATTTCAATAAACACTCAA
ATTTGGAAAAAATGGACTGTCAT
Found at i:64153861 original size:101 final size:100
Alignment explanation
Indices: 64153612--64153945 Score: 402
Period size: 101 Copynumber: 3.3 Consensus size: 100
64153602 ATAATAAGAT
* * *
64153612 TTGATTGAATGCAAAATTAAGAGGAA-ATTTCTATAAGCATTCAAATT-TGGAAAAGATGGACTA
1 TTGATTGAATGCAAAATTAAGA-GAACATTTCTATAAGCATTCAAATTGGGGCAAA-ATGGACTG
*
64153675 TCATGCCAAACTACCCAAGCCAAACTACCCTACCAAAA
64 TCATGCCAAACTACCCAA-CCAAACTGCCCTACCAAAA
* * * * *
64153713 TTGGATTGAATGCAAATTTAACAAAACATTTCTATAAGGATTCAAATTGGGGCGAAATGGACTGT
1 TT-GATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGGCAAAATGGACTGT
* * * *
64153778 CATGCCAAATTACCTAACCAAATTGCCCCTGCCAAAA
65 CATGCCAAACTACCCAACCAAACTG-CCCTACCAAAA
* **
64153815 TTGATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATTGGAACAAAATGGACTGTC
1 TTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGGCAAAATGGACTGTC
* * * *
64153880 ATGCCGAACTACCCAGCTAAACTGCCTTACCAAAA
66 ATGCCAAACTACCCAACCAAACTGCCCTACCAAAA
* *
64153915 TTTGATTGAATGCAAAATTAATAGGACATTT
1 -TTGATTGAATGCAAAATTAAGAGAACATTT
64153946 GTGAAATGGA
Statistics
Matches: 197, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
100 9 0.05
101 111 0.56
102 73 0.37
103 4 0.02
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (100 bp):
TTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGGCAAAATGGACTGTC
ATGCCAAACTACCCAACCAAACTGCCCTACCAAAA
Found at i:64153972 original size:81 final size:80
Alignment explanation
Indices: 64153868--64154025 Score: 203
Period size: 81 Copynumber: 2.0 Consensus size: 80
64153858 AATTGGAACA
* * * *
64153868 AAATGGACTGTCATGCCGAACTACCCAGCTAAACT-GCCT-TACCAAAATTTGATTGAATGCAAA
1 AAATGGACTATCATGCCAAACTACCCAGCCAAACTAGCCTGT--CAAAA-TTAATTGAATGCAAA
* *
64153931 ATTAATAGGACATTTGTG
63 ATTAAGAGGAAATTTGTG
**
64153949 AAATGGACTATCATGCCAAACTACCCAGCCAAACTATTCTGTCAAAATTAATTGAATGCAAAATT
1 AAATGGACTATCATGCCAAACTACCCAGCCAAACTAGCCTGTCAAAATTAATTGAATGCAAAATT
64154014 AAGAGGAAATTT
66 AAGAGGAAATTT
64154026 TTATAAACAT
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
80 27 0.40
81 37 0.55
82 2 0.03
83 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (80 bp):
AAATGGACTATCATGCCAAACTACCCAGCCAAACTAGCCTGTCAAAATTAATTGAATGCAAAATT
AAGAGGAAATTTGTG
Found at i:64154225 original size:282 final size:284
Alignment explanation
Indices: 64153667--64154227 Score: 695
Period size: 282 Copynumber: 2.0 Consensus size: 284
64153657 TTTGGAAAAG
* *
64153667 ATGGACTATCATGCCAAACTACCCAAGCCAAACTACCCTACCAAAATTGGATTGAATGCAAATTT
1 ATGGACTATCATGCCAAACTACCCAAGCCAAACTACCCTACCAAAATTGAATTGAATGCAAAATT
** * * * *
64153732 AACAAAACATTTCTATAAGGATTCAAATTGGGGCGAAATGGACTGTCATGCCAAATTACCTAACC
66 AACAAAACATTTCTATAAACATTCAAATTGGAGCAAAATGGACTGTCATGCCAAACTACCCAACC
* *
64153797 AAATTGCCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATT
131 AAACTGACCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATT
** * * * * *
64153862 GGAACAAAATGGACTGTCATGCCGAACTACCCAGCTAAACTGCCTTACCAAAATTTGATTGAATG
196 GGAACAAAATAAACTGTCATGCCAAACTACCCAGCCAAACTCCCCTACCAAAATTTAATTGAATG
*
64153927 CAAAATTAATAGGACATTTGTGAA
261 CAAAATTAAGAGGACATTTGTGAA
** **
64153951 ATGGACTATCATGCCAAACTACCC-AGCCAAACTATTCTGTCAAAATT-AATTGAATGCAAAATT
1 ATGGACTATCATGCCAAACTACCCAAGCCAAACTACCCTACCAAAATTGAATTGAATGCAAAATT
* * * * * *
64154014 AAGAGGAA-ATTTTTATAAACATTCAAATTAGGAG-AAAATGGATTGTGATGCCAAGCTACCCAA
66 AACA-AAACATTTCTATAAACATTCAAATT-GGAGCAAAATGGACTGTCATGCCAAACTACCCAA
** * * *
64154077 CCAAACT-ACCCTGCCAAAAGTTGATTGAATGCAAAATTTGGA-AGACATTTCTTTAAGCATTTA
129 CCAAACTGACCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGA-ACATTTCTATAAACATTCA
* * **
64154140 AATT-GAGACAAAATAAATTGTCATGCCAAACTATCCAGCCAAACTCCCCTGTCAAAATTTAATT
192 AATTGGA-ACAAAATAAACTGTCATGCCAAACTACCCAGCCAAACTCCCCTACCAAAATTTAATT
64154204 GAATGCAAAATTAAGAGGACATTT
256 GAATGCAAAATTAAGAGGACATTT
64154228 CTATAAGCAT
Statistics
Matches: 235, Mismatches: 37, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
281 14 0.06
282 173 0.74
283 24 0.10
284 24 0.10
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.26
Consensus pattern (284 bp):
ATGGACTATCATGCCAAACTACCCAAGCCAAACTACCCTACCAAAATTGAATTGAATGCAAAATT
AACAAAACATTTCTATAAACATTCAAATTGGAGCAAAATGGACTGTCATGCCAAACTACCCAACC
AAACTGACCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAACATTCAAATT
GGAACAAAATAAACTGTCATGCCAAACTACCCAGCCAAACTCCCCTACCAAAATTTAATTGAATG
CAAAATTAAGAGGACATTTGTGAA
Found at i:64154261 original size:101 final size:100
Alignment explanation
Indices: 64153947--64154272 Score: 377
Period size: 101 Copynumber: 3.2 Consensus size: 100
64153937 AGGACATTTG
* * **
64153947 TGAAATGGACTATCATGCCAAACTACCCAGCCAAACTATTCTGTCAAAATTAATTGAATGCAAAA
1 TGAAATGGATTGTCATGCCAAACTACCCAGCCAAACTACCCTGTCAAAATTAATTGAATGCAAAA
* * * *
64154012 TTAAGAGGAAATTTTTATAAACATTCAAATTAGGA
66 TTAAGAGGACATTTCTATAAGCATTTAAATTAGGA
* * * * *
64154047 -GAAAATGGATTGTGATGCCAAGCTACCCAACCAAACTACCCTGCCAAAAGTTGATTGAATGCAA
1 TG-AAATGGATTGTCATGCCAAACTACCCAGCCAAACTACCCTGTCAAAA-TTAATTGAATGCAA
** * *
64154111 AATTTGGAAGACATTTCTTTAAGCATTTAAATT-GAGA
64 AATTAAGAGGACATTTCTATAAGCATTTAAATTAG-GA
** ** * *
64154148 CAAAATAAATTGTCATGCCAAACTATCCAGCCAAACTCCCCTGTCAAAATTTAATTGAATGCAAA
1 TGAAATGGATTGTCATGCCAAACTACCCAGCCAAACTACCCTGTCAAAA-TTAATTGAATGCAAA
64154213 ATTAAGAGGACATTTCTATAAGCATTTAAATTAGGA
65 ATTAAGAGGACATTTCTATAAGCATTTAAATTAGGA
**
64154249 TGAAATGGATTGTCACACCAAACT
1 TGAAATGGATTGTCATGCCAAACT
64154273 GCTGTGCCAA
Statistics
Matches: 183, Mismatches: 38, Indels: 9
0.80 0.17 0.04
Matches are distributed among these distances:
99 1 0.01
100 40 0.22
101 141 0.77
102 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.27
Consensus pattern (100 bp):
TGAAATGGATTGTCATGCCAAACTACCCAGCCAAACTACCCTGTCAAAATTAATTGAATGCAAAA
TTAAGAGGACATTTCTATAAGCATTTAAATTAGGA
Found at i:64162679 original size:15 final size:15
Alignment explanation
Indices: 64162659--64162710 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
64162649 ACTACAAAAC
64162659 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
64162674 ATTTATAATTATAATAAAT
1 ATTTATTA-T-TAAT--AT
*
64162693 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
64162708 ATT
1 ATT
64162711 AATATTGGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:64162696 original size:19 final size:19
Alignment explanation
Indices: 64162672--64162708 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
64162662 TATTATTAAT
*
64162672 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
64162691 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
64162709 TTAATATTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:64162761 original size:13 final size:13
Alignment explanation
Indices: 64162743--64162782 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
64162733 ATGTGAATAC
*
64162743 TATTATTTAAATT
1 TATTATTAAAATT
64162756 TATTATAATAAAATT
1 TATTAT--TAAAATT
64162771 TATTATTAAAAT
1 TATTATTAAAAT
64162783 AAAATTGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 12 0.50
15 12 0.50
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TATTATTAAAATT
Found at i:64169877 original size:25 final size:25
Alignment explanation
Indices: 64169841--64169896 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
64169831 TAATAAAATA
*
64169841 AAAAAT-ATATAATATCCAA-TTAAT
1 AAAAATAAAATAATA-CCAATTTAAT
*
64169865 AAAAATAAAATAATAGCAATTTAAT
1 AAAAATAAAATAATACCAATTTAAT
*
64169890 AACAATA
1 AAAAATA
64169897 TGTAAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 9 0.33
25 18 0.67
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (25 bp):
AAAAATAAAATAATACCAATTTAAT
Found at i:64170775 original size:33 final size:32
Alignment explanation
Indices: 64170738--64170833 Score: 99
Period size: 33 Copynumber: 3.0 Consensus size: 32
64170728 AATATAAATT
*
64170738 ATTTATAA-AATATTAAATATAATAATAAATAAG
1 ATTTATAATAAT-TT-AATATAATAATAAATAAA
* *
64170771 ATTTA-AATAATTTAATATAATTATACATAAA
1 ATTTATAATAATTTAATATAATAATAAATAAA
*
64170802 ATATT-TAACTAATTTAATATAATAATATATAA
1 AT-TTATAA-TAATTTAATATAATAATAAATAA
64170834 CATATAAATT
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
31 17 0.31
32 8 0.15
33 29 0.54
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (32 bp):
ATTTATAATAATTTAATATAATAATAAATAAA
Found at i:64171501 original size:17 final size:17
Alignment explanation
Indices: 64171479--64171537 Score: 59
Period size: 19 Copynumber: 3.3 Consensus size: 17
64171469 TTTTTCTTAT
64171479 TTTTTTATTTGTTTGTC
1 TTTTTTATTTGTTTGTC
64171496 TTTTTTTTCATTT-TTTGT-
1 --TTTTTT-ATTTGTTTGTC
64171514 TATTTTTATTTGTTTGTCC
1 T-TTTTTATTTGTTTGT-C
64171533 TTTTT
1 TTTTT
64171538 CTTTTTTATA
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
16 5 0.14
17 10 0.29
18 4 0.11
19 12 0.34
20 4 0.11
ACGTcount: A:0.07, C:0.07, G:0.08, T:0.78
Consensus pattern (17 bp):
TTTTTTATTTGTTTGTC
Found at i:64172277 original size:4 final size:4
Alignment explanation
Indices: 64172268--64172299 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
64172258 TATTAAGTGA
64172268 TTAT TTAT TTAT TTAT TTA- TT-T TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
64172300 TTAAGTTGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 4 0.15
4 22 0.85
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTAT
Found at i:64173340 original size:28 final size:28
Alignment explanation
Indices: 64173286--64173340 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
64173276 TTTTTCAGTT
* *
64173286 TTTTATTTATTTATTTGTCATTTATTTG
1 TTTTATTTATTTATTTATCATTGATTTG
* * *
64173314 TTTTATTTGTTTGTTTATTATTGATTT
1 TTTTATTTATTTATTTATCATTGATTT
64173341 TATAATATGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.16, C:0.02, G:0.09, T:0.73
Consensus pattern (28 bp):
TTTTATTTATTTATTTATCATTGATTTG
Found at i:64173363 original size:23 final size:23
Alignment explanation
Indices: 64173337--64173639 Score: 122
Period size: 22 Copynumber: 13.6 Consensus size: 23
64173327 TTTATTATTG
* *
64173337 ATTTTATAATATGTTAAATGTAT
1 ATTTTATAATATTTTAAATATAT
64173360 ATTTTA-AATATTTTATAATATAT
1 ATTTTATAATATTTTA-AATATAT
* *
64173383 ATTTTTTAAAATTTTAAATATAT
1 ATTTTATAATATTTTAAATATAT
*
64173406 ATTTT-TAA-A-ATT--AT-TAT
1 ATTTTATAATATTTTAAATATAT
* *
64173423 TTTTTA-AAAATTTTAAATAT-T
1 ATTTTATAATATTTTAAATATAT
* * *
64173444 ATTTTTTAA-ATTTTAAATACAA
1 ATTTTATAATATTTTAAATATAT
* * *
64173466 ATTTT-TAATATTATAAAACATTT
1 ATTTTATAATATT-TTAAATATAT
*** * *
64173489 AAAATATATTATTTTTAAAGATAT
1 ATTTTATAATA-TTTTAAATATAT
* * * *
64173513 GACCTTT-CAA-A-TTT-ATTATTT
1 -A-TTTTATAATATTTTAAATATAT
*
64173534 ATTTTATAATATTTTAAATGTAT
1 ATTTTATAATATTTTAAATATAT
* *
64173557 ATTTTA-AAAATTTTAAAAAT-T
1 ATTTTATAATATTTTAAATATAT
* *
64173578 ATTTTTTAAAATTTTAAATATAAT
1 ATTTTATAATATTTTAAATAT-AT
* * *
64173602 TTTTTAAAATTATTTTTAAAGATAT
1 ATTTTATAA-TA-TTTTAAATATAT
64173627 -TTTTA-AATCATTT
1 ATTTTATAAT-ATTT
64173640 AGAATGGCTC
Statistics
Matches: 208, Mismatches: 46, Indels: 53
0.68 0.15 0.17
Matches are distributed among these distances:
17 9 0.04
18 3 0.01
19 5 0.02
20 5 0.02
21 32 0.15
22 56 0.27
23 49 0.24
24 32 0.15
25 7 0.03
26 10 0.05
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (23 bp):
ATTTTATAATATTTTAAATATAT
Found at i:64173405 original size:25 final size:24
Alignment explanation
Indices: 64173361--64173411 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
64173351 TAAATGTATA
*
64173361 TTTTAAATATTTTATAATATATATT
1 TTTTAAATATTTTAAAATATAT-TT
64173386 TTTTAAA-ATTTTAAATATATATTT
1 TTTTAAATATTTTAAA-ATATATTT
64173410 TT
1 TT
64173412 AAAATTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTTAAATATTTTAAAATATATTT
Found at i:64173412 original size:38 final size:38
Alignment explanation
Indices: 64173382--64173455 Score: 123
Period size: 38 Copynumber: 1.9 Consensus size: 38
64173372 TTATAATATA
64173382 TATTTTTT-AAAATTTTAAATATATATTTTTAAAATTAT
1 TATTTTTTAAAAATTTTAAATAT-TATTTTTAAAATTAT
*
64173420 TATTTTTTAAAAATTTTAAATATTATTTTTTAAATT
1 TATTTTTTAAAAATTTTAAATATTATTTTTAAAATT
64173456 TTAAATACAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
38 20 0.59
39 14 0.41
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (38 bp):
TATTTTTTAAAAATTTTAAATATTATTTTTAAAATTAT
Found at i:64173413 original size:22 final size:22
Alignment explanation
Indices: 64173350--64173612 Score: 136
Period size: 22 Copynumber: 12.0 Consensus size: 22
64173340 TTATAATATG
*
64173350 TTAAATGTATA-TTTTAAATATT
1 TTAAATATATATTTTTAAA-ATT
64173372 TTATAATATATATTTTTTAAAATT
1 TTA-AATATATA-TTTTTAAAATT
64173396 TTAAATATATATTTTTAAAA--
1 TTAAATATATATTTTTAAAATT
64173416 TT--AT-TAT-TTTTTAAAAATT
1 TTAAATATATATTTTT-AAAATT
*
64173435 TTAAATAT-TATTTTTTAAATT
1 TTAAATATATATTTTTAAAATT
* * *
64173456 TTAAATACAAATTTTTAATATT
1 TTAAATATATATTTTTAAAATT
* * * ** * * *
64173478 ATAAAACATTTAAAATATATTATTT
1 -TTAAATATAT-ATTTTTA-AAATT
* ** *
64173503 TTAAAGATATGACCTTTCAAA-T
1 TTAAATATAT-ATTTTTAAAATT
* * *
64173525 TT-ATTATTTATTTTATAATATT
1 TTAAATATATATTTT-TAAAATT
* *
64173547 TTAAATGTATATTTTAAAAATT
1 TTAAATATATATTTTTAAAATT
*
64173569 TTAAAAAT-TATTTTTTAAAATT
1 TTAAATATATA-TTTTTAAAATT
64173591 TTAAATATA-ATTTTTTAAAATT
1 TTAAATATATA-TTTTTAAAATT
64173613 ATTTTTAAAG
Statistics
Matches: 179, Mismatches: 43, Indels: 38
0.69 0.17 0.15
Matches are distributed among these distances:
16 5 0.03
17 7 0.04
18 2 0.01
19 2 0.01
20 5 0.03
21 24 0.13
22 75 0.42
23 30 0.17
24 20 0.11
25 9 0.05
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (22 bp):
TTAAATATATATTTTTAAAATT
Found at i:64173436 original size:26 final size:23
Alignment explanation
Indices: 64173408--64173462 Score: 78
Period size: 21 Copynumber: 2.4 Consensus size: 23
64173398 AAATATATAT
64173408 TTTTAAAATTATTATTTTTTAAAAA
1 TTTT-AAA-TATTATTTTTTAAAAA
64173433 TTTTAAATATTATTTTTT--AAA
1 TTTTAAATATTATTTTTTAAAAA
64173454 TTTTAAATA
1 TTTTAAATA
64173463 CAAATTTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 12 0.40
23 11 0.37
24 3 0.10
25 4 0.13
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
TTTTAAATATTATTTTTTAAAAA
Found at i:64173457 original size:60 final size:63
Alignment explanation
Indices: 64173361--64173479 Score: 181
Period size: 60 Copynumber: 1.9 Consensus size: 63
64173351 TAAATGTATA
* * *
64173361 TTTTAAATATTTTATAATATATATTTTTTAAAATTTTAAATATATATTTTTAAAATTATTATT
1 TTTTAAAAATTTTATAATATATATTTTTTAAAATTTTAAATACAAATTTTTAAAATTATTATT
*
64173424 TTTTAAAAATTTTA-AATAT-TATTTTTT-AAATTTTAAATACAAATTTTTAATATTAT
1 TTTTAAAAATTTTATAATATATATTTTTTAAAATTTTAAATACAAATTTTTAAAATTAT
64173480 AAAACATTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
60 26 0.50
61 8 0.15
62 5 0.10
63 13 0.25
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (63 bp):
TTTTAAAAATTTTATAATATATATTTTTTAAAATTTTAAATACAAATTTTTAAAATTATTATT
Found at i:64173493 original size:60 final size:62
Alignment explanation
Indices: 64173362--64173493 Score: 153
Period size: 60 Copynumber: 2.1 Consensus size: 62
64173352 AAATGTATAT
* * * ***
64173362 TTTAAATATTTTATAATATATATTTTTTAAAATTTTAAATATATATTTTTAAAATTATTATTT
1 TTTAAA-ATTTTATAATATATATTTTTTAAAATTTTAAATACAAATTTTTAAAATTATAAACA
*
64173425 TTTAAAAATTTTA-AATAT-TATTTTTT-AAATTTTAAATACAAATTTTTAATATTATAAAACA
1 TTT-AAAATTTTATAATATATATTTTTTAAAATTTTAAATACAAATTTTTAAAATTAT-AAACA
64173486 TTTAAAAT
1 TTTAAAAT
64173494 ATATTATTTT
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
60 31 0.52
61 12 0.20
62 5 0.08
63 9 0.15
64 3 0.05
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (62 bp):
TTTAAAATTTTATAATATATATTTTTTAAAATTTTAAATACAAATTTTTAAAATTATAAACA
Found at i:64173639 original size:11 final size:11
Alignment explanation
Indices: 64173535--64173633 Score: 62
Period size: 12 Copynumber: 8.6 Consensus size: 11
64173525 TTATTATTTA
*
64173535 TTTTATAATA-
1 TTTTAAAATAT
*
64173545 TTTTAAATGTAT
1 TTTTAAA-ATAT
64173557 ATTTTAAAA-AT
1 -TTTTAAAATAT
*
64173568 TTTAAAAATTAT
1 TTTTAAAA-TAT
*
64173580 TTTTTAAA-A-
1 TTTTAAAATAT
64173589 TTTTAAATATAATT
1 TTTTAAA-AT-A-T
64173603 TTTTAAAATTAT
1 TTTTAAAA-TAT
64173615 TTTTAAAGATAT
1 TTTTAAA-ATAT
64173627 TTTTAAA
1 TTTTAAA
64173634 TCATTTAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 22
0.71 0.07 0.22
Matches are distributed among these distances:
9 6 0.09
10 15 0.21
11 4 0.06
12 27 0.39
13 10 0.14
14 8 0.11
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:64177459 original size:42 final size:43
Alignment explanation
Indices: 64177393--64177510 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 43
64177383 TTACGTGTAC
* * * *
64177393 GACTATATCTAGGATA-TGACATCGATATGAGATTTTACGT-A
1 GACTATAACTAGGCTATTGGCATCGATATGAGATTTCACGTAA
**
64177434 GACTATAACTAGGCTATTGGCATCGATATGAGATTTCGTGTAA
1 GACTATAACTAGGCTATTGGCATCGATATGAGATTTCACGTAA
* * * *
64177477 GACCATAGCTGGGCTATTGGTATCGATATGAGAT
1 GACTATAACTAGGCTATTGGCATCGATATGAGAT
64177511 CTTATGTAAG
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 14 0.22
42 20 0.31
43 31 0.48
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.32
Consensus pattern (43 bp):
GACTATAACTAGGCTATTGGCATCGATATGAGATTTCACGTAA
Found at i:64177504 original size:43 final size:42
Alignment explanation
Indices: 64177412--64177532 Score: 145
Period size: 43 Copynumber: 2.8 Consensus size: 42
64177402 TAGGATATGA
* * *
64177412 CATCGATATGAGATTTTACGT-AGACTATAACTAGGCTATTGG
1 CATCGATATGAGA-TTTATGTAAGACCATAACTGGGCTATTGG
* *
64177454 CATCGATATGAGATTTCGTGTAAGACCATAGCTGGGCTATTGG
1 CATCGATATGAGATTT-ATGTAAGACCATAACTGGGCTATTGG
* *
64177497 TATCGATATGAGATCTTATGTAAGACCATATCTGGG
1 CATCGATATGAGAT-TTATGTAAGACCATAACTGGG
64177533 ATATCGCATT
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
41 3 0.04
42 15 0.22
43 48 0.71
44 2 0.03
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (42 bp):
CATCGATATGAGATTTATGTAAGACCATAACTGGGCTATTGG
Found at i:64177670 original size:20 final size:20
Alignment explanation
Indices: 64177624--64177670 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
64177614 TAGCAATGCT
*
64177624 TAAGTTGTGAAAGACTATGG
1 TAAGTTGTGAAAGACTATGA
* *
64177644 TATGTTGTGAAAGATTATGA
1 TAAGTTGTGAAAGACTATGA
64177664 TAAGTTG
1 TAAGTTG
64177671 CGAGTTGGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.34, C:0.02, G:0.28, T:0.36
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATGA
Found at i:64182077 original size:42 final size:42
Alignment explanation
Indices: 64182018--64182132 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 42
64182008 GGGTTAGTTA
*
64182018 AGATTACGTGTAAGACCATATCTGGGATATGGAATTGATATG
1 AGATTACGTGTAAGACCATATCTGGGATATGGAATCGATATG
* * * *
64182060 AGATTTCGTGCAAGACCATAGCT-GGACTATTGGCATCGATATG
1 AGATTACGTGTAAGACCATATCTGGGA-TA-TGGAATCGATATG
** * *
64182103 AGATCCCATGTAAGACCATATCTGAGATAT
1 AGATTACGTGTAAGACCATATCTGGGATAT
64182133 CACATTAGTA
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
41 3 0.05
42 23 0.39
43 31 0.53
44 2 0.03
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATATCTGGGATATGGAATCGATATG
Found at i:64182106 original size:43 final size:42
Alignment explanation
Indices: 64182018--64182106 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 42
64182008 GGGTTAGTTA
* * *
64182018 AGATTACGTGTAAGACCATATCTGGGATATGGAATTGATATG
1 AGATTACGTGCAAGACCATAGCTGGGATATGGAATCGATATG
* *
64182060 AGATTTCGTGCAAGACCATAGCT-GGACTATTGGCATCGATATG
1 AGATTACGTGCAAGACCATAGCTGGGA-TA-TGGAATCGATATG
64182103 AGAT
1 AGAT
64182107 CCCATGTAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
41 3 0.08
42 22 0.55
43 15 0.38
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.29
Consensus pattern (42 bp):
AGATTACGTGCAAGACCATAGCTGGGATATGGAATCGATATG
Found at i:64182248 original size:20 final size:20
Alignment explanation
Indices: 64182220--64182266 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
64182210 CAGCAATGCT
64182220 TAAGTTGTGAAAGACTATGG
1 TAAGTTGTGAAAGACTATGG
* *
64182240 TATGTTGTGAAAGATTATGG
1 TAAGTTGTGAAAGACTATGG
64182260 TAAGTTG
1 TAAGTTG
64182267 CAAGTTGGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.32, C:0.02, G:0.30, T:0.36
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATGG
Found at i:64185638 original size:25 final size:25
Alignment explanation
Indices: 64185604--64185655 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
64185594 AACTAGGCAT
64185604 ATTCAAACTC-AAAATTTTATCTTAC
1 ATTCAAACTCGAAAA-TTTATCTTAC
64185629 ATTCAAACTCGAAAATTTATCTTAC
1 ATTCAAACTCGAAAATTTATCTTAC
64185654 AT
1 AT
64185656 ACAAGAACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 22 0.85
26 4 0.15
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.38
Consensus pattern (25 bp):
ATTCAAACTCGAAAATTTATCTTAC
Found at i:64186635 original size:18 final size:16
Alignment explanation
Indices: 64186591--64186685 Score: 63
Period size: 15 Copynumber: 5.9 Consensus size: 16
64186581 TAAATTTTAC
*
64186591 ATAATACAAATTAAAAA
1 ATAAAACAAA-TAAAAA
64186608 AT-AAACAAATAAAAA
1 ATAAAACAAATAAAAA
*
64186623 ATAAAGGACAAATAAATA
1 ATAAA--ACAAATAAAAA
*
64186641 ATAAAA-AAGTAAATAA
1 ATAAAACAAATAAA-AA
* * *
64186657 GT-AAATAAA-GAAAA
1 ATAAAACAAATAAAAA
*
64186671 ATAAAATAAATAAAA
1 ATAAAACAAATAAAA
64186686 CGAAAAAGGA
Statistics
Matches: 62, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
14 3 0.05
15 26 0.42
16 16 0.26
17 2 0.03
18 15 0.24
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (16 bp):
ATAAAACAAATAAAAA
Found at i:64186662 original size:27 final size:27
Alignment explanation
Indices: 64186632--64186683 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
64186622 AATAAAGGAC
* *
64186632 AAATAAATAATAAA-AAAGTAAATAAGT
1 AAATAAAGAA-AAATAAAATAAATAAGT
64186659 AAATAAAGAAAAATAAAATAAATAA
1 AAATAAAGAAAAATAAAATAAATAA
64186684 AACGAAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (27 bp):
AAATAAAGAAAAATAAAATAAATAAGT
Found at i:64186670 original size:23 final size:23
Alignment explanation
Indices: 64186598--64186684 Score: 72
Period size: 23 Copynumber: 3.7 Consensus size: 23
64186588 TACATAATAC
* *
64186598 AAATTAAA-AAATAAACAAATAAA
1 AAATAAAATAAATAAA-TAATAAA
*
64186621 AAATAAAGGACAAATAAATAATAAA
1 AAATAAA--ATAAATAAATAATAAA
*
64186646 AAAGT-AAATAAGTAAATAA-AGAA
1 AAA-TAAAATAAATAAATAATA-AA
64186669 AAATAAAATAAATAAA
1 AAATAAAATAAATAAA
64186685 ACGAAAAAGG
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
22 2 0.04
23 31 0.58
25 12 0.23
26 8 0.15
ACGTcount: A:0.75, C:0.02, G:0.06, T:0.17
Consensus pattern (23 bp):
AAATAAAATAAATAAATAATAAA
Found at i:64189664 original size:11 final size:11
Alignment explanation
Indices: 64189650--64189747 Score: 72
Period size: 11 Copynumber: 8.5 Consensus size: 11
64189640 TATTTACATA
64189650 ATATAAAAAAT
1 ATATAAAAAAT
*
64189661 ATATGAATAATAT
1 ATAT-AA-AAAAT
*
64189674 GATATTAAAAAT
1 -ATATAAAAAAT
64189686 ATATACATAAAA-
1 ATATA-A-AAAAT
*
64189698 ATATAATAAAT
1 ATATAAAAAAT
* *
64189709 ATATATATAAT
1 ATATAAAAAAT
*
64189720 ATATATAAAAT
1 ATATAAAAAAT
* *
64189731 GTATAAAATAT
1 ATATAAAAAAT
64189742 ATATAA
1 ATATAA
64189748 TACATACACA
Statistics
Matches: 68, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
10 3 0.04
11 40 0.59
12 12 0.18
13 9 0.13
14 4 0.06
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (11 bp):
ATATAAAAAAT
Found at i:64189671 original size:45 final size:45
Alignment explanation
Indices: 64189610--64189729 Score: 122
Period size: 45 Copynumber: 2.6 Consensus size: 45
64189600 CAATATAGAC
* * *
64189610 AAAAATATATACATAATGT-AGTATTGAAAATATTTACATAATATA
1 AAAAATATATACATAATATGA-TATTAAAAATATATACATAATATA
64189655 AAAAATATATGA-ATAATATGATATTAAAAATATATACATAAAAATATA
1 AAAAATATAT-ACATAATATGATATTAAAAATATATACAT---AATATA
* *
64189703 ATAAATATATATATAATAT-ATA-TAAAA
1 AAAAATATATACATAATATGATATTAAAA
64189730 TGTATAAAAT
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
45 32 0.49
46 7 0.11
47 4 0.06
48 22 0.34
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (45 bp):
AAAAATATATACATAATATGATATTAAAAATATATACATAATATA
Found at i:64189678 original size:25 final size:24
Alignment explanation
Indices: 64189610--64189729 Score: 99
Period size: 25 Copynumber: 5.1 Consensus size: 24
64189600 CAATATAGAC
* *
64189610 AAAAATATATACATAATGTAGTATT
1 AAAAATATATACATAATATA-TATA
* *
64189635 GAAAATATTTAC---ATA-ATATA
1 AAAAATATATACATAATATATATA
*
64189655 AAAAATATATGA-ATAATATGATATT
1 AAAAATATAT-ACATAATAT-ATATA
*
64189680 AAAAATATATACATAA-AAATATA
1 AAAAATATATACATAATATATATA
* *
64189703 ATAAATATATATATAATATATATA
1 AAAAATATATACATAATATATATA
64189727 AAA
1 AAA
64189730 TGTATAAAAT
Statistics
Matches: 74, Mismatches: 13, Indels: 17
0.71 0.12 0.16
Matches are distributed among these distances:
20 11 0.15
21 2 0.03
22 2 0.03
23 21 0.28
24 10 0.14
25 28 0.38
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (24 bp):
AAAAATATATACATAATATATATA
Found at i:64189722 original size:20 final size:20
Alignment explanation
Indices: 64189695--64189747 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
64189685 TATATACATA
64189695 AAAATATA-ATAAATATATAT
1 AAAATATATATAAA-ATATAT
* *
64189715 ATAATATATATAAAATGTAT
1 AAAATATATATAAAATATAT
64189735 AAAATATATATAA
1 AAAATATATATAA
64189748 TACATACACA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 24 0.83
21 5 0.17
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (20 bp):
AAAATATATATAAAATATAT
Found at i:64189850 original size:23 final size:23
Alignment explanation
Indices: 64189805--64189850 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
64189795 AATACCTCAT
* *
64189805 AAATATATACATATATATGTTAA
1 AAATAAATACATATATATATTAA
64189828 AAATAAATACATAT-TAATATTAA
1 AAATAAATACATATAT-ATATTAA
64189851 GATGATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (23 bp):
AAATAAATACATATATATATTAA
Found at i:64191633 original size:18 final size:18
Alignment explanation
Indices: 64191578--64191678 Score: 63
Period size: 18 Copynumber: 5.8 Consensus size: 18
64191568 AACTTGAAAT
64191578 TTTTAAAAAAA-T-AAAA
1 TTTTAAAAAAATTAAAAA
* *
64191594 TTTT-CAAAAATTCTAAAA
1 TTTTAAAAAAATT-AAAAA
64191612 --TTAAAAAAATTAAAAA
1 TTTTAAAAAAATTAAAAA
*
64191628 TTTTAAAAAATAATATAAAA
1 TTTTAAAAAA-ATTA-AAAA
*
64191648 TTATT--AAAAGTTAAAAA
1 TT-TTAAAAAAATTAAAAA
**
64191665 AGTTAAAAAAATTA
1 TTTTAAAAAAATTA
64191679 TATAAATTCC
Statistics
Matches: 65, Mismatches: 9, Indels: 20
0.69 0.10 0.21
Matches are distributed among these distances:
15 5 0.08
16 13 0.20
17 11 0.17
18 21 0.32
19 7 0.11
20 6 0.09
21 2 0.03
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (18 bp):
TTTTAAAAAAATTAAAAA
Found at i:64191674 original size:38 final size:36
Alignment explanation
Indices: 64191607--64191684 Score: 93
Period size: 38 Copynumber: 2.1 Consensus size: 36
64191597 TCAAAAATTC
* *
64191607 TAAAATTAAAAAAATTAAAAATTTTAAAAAATAATA
1 TAAAATTAAAAAAATTAAAAAGTTAAAAAAATAATA
* * *
64191643 TAAAATTATTAAAAGTTAAAAAAGTTAAAAAAATTATA
1 TAAAATTA-AAAAAATT-AAAAAGTTAAAAAAATAATA
64191681 TAAA
1 TAAA
64191685 TTCCCATTGA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
36 8 0.23
37 6 0.17
38 21 0.60
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (36 bp):
TAAAATTAAAAAAATTAAAAAGTTAAAAAAATAATA
Found at i:64191686 original size:37 final size:35
Alignment explanation
Indices: 64191599--64191686 Score: 88
Period size: 38 Copynumber: 2.5 Consensus size: 35
64191589 TAAAATTTTC
* * *
64191599 AAAAATTCTA-AAATTAAAAAAATTAAAAATTTTA
1 AAAAATTATATAAATTAAAAAAATTAAAAAGTTAA
* * *
64191633 AAAAATAATATAAAATTATTAAAAGTTAAAAAAGTTAA
1 AAAAATTATAT-AAATTA-AAAAAATT-AAAAAGTTAA
64191671 AAAAATTATATAAATT
1 AAAAATTATATAAATT
64191687 CCCATTGAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
34 8 0.19
36 6 0.14
37 11 0.26
38 18 0.42
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (35 bp):
AAAAATTATATAAATTAAAAAAATTAAAAAGTTAA
Found at i:64191750 original size:20 final size:20
Alignment explanation
Indices: 64191714--64191765 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
64191704 TAAATTTTCA
* *
64191714 AAAATTATA-AAATTTATTG
1 AAAATAATAGAAACTTATTG
*
64191733 AAAATAATAGAAACTTATTT
1 AAAATAATAGAAACTTATTG
64191753 AAAA-AATATGAAA
1 AAAATAATA-GAAA
64191766 AATAACAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.33
Consensus pattern (20 bp):
AAAATAATAGAAACTTATTG
Found at i:64192564 original size:20 final size:20
Alignment explanation
Indices: 64192519--64192564 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
64192509 TTTTATATAA
* *
64192519 AATTTCAATATTTTTTTTCC
1 AATTTTAATAATTTTTTTCC
* *
64192539 ATTTTTAATAATTTTTTTGC
1 AATTTTAATAATTTTTTTCC
64192559 AATTTT
1 AATTTT
64192565 TGTTTTTTTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.63
Consensus pattern (20 bp):
AATTTTAATAATTTTTTTCC
Found at i:64192666 original size:26 final size:27
Alignment explanation
Indices: 64192637--64192696 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 27
64192627 GTTCTTATAA
*
64192637 TTTTTATTATTTTTGAAAATTCT-AAT
1 TTTTTATAATTTTTGAAAATTCTAAAT
64192663 TTTTTATAATTTTTGAAAATTCTAAAT
1 TTTTTATAATTTTTGAAAATTCTAAAT
64192690 TTTTTAT
1 TTTTTAT
64192697 GACTTTAGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 22 0.69
27 10 0.31
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (27 bp):
TTTTTATAATTTTTGAAAATTCTAAAT
Found at i:64192711 original size:26 final size:26
Alignment explanation
Indices: 64192637--64192706 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 26
64192627 GTTCTTATAA
* * *
64192637 TTTTTATTATTTTTGAAAATTCTAAT
1 TTTTTATAACTTTAGAAAATTCTAAT
* *
64192663 TTTTTATAATTTTTGAAAATTCTAAAT
1 TTTTTATAACTTTAGAAAATTCT-AAT
*
64192690 TTTTTATGACTTTAGAA
1 TTTTTATAACTTTAGAA
64192707 TTTCTTTTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 22 0.56
27 17 0.44
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (26 bp):
TTTTTATAACTTTAGAAAATTCTAAT
Found at i:64206706 original size:26 final size:26
Alignment explanation
Indices: 64206657--64206707 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
64206647 TAATGATAAA
* *
64206657 ATTAAGGTTATGTGCTAAAGTTATAT
1 ATTAAGGTTATGTCCCAAAGTTATAT
64206683 ATTAAGGTTATGGTCCCAAA-TTATA
1 ATTAAGGTTAT-GTCCCAAAGTTATA
64206708 CAGAAGGTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (26 bp):
ATTAAGGTTATGTCCCAAAGTTATAT
Found at i:64209641 original size:44 final size:44
Alignment explanation
Indices: 64209584--64209678 Score: 127
Period size: 44 Copynumber: 2.2 Consensus size: 44
64209574 GCTCATTGGC
* ** *
64209584 AAATACTAGACACAAGCAGACTTTAAACCTTTAGCCCATTGGTG
1 AAATACTAGACACAAGAAGACTTTAAACAATTAGCCCATCGGTG
* * *
64209628 AAATACTATACACAAGAAGACTTTATACAATTCGCCCATCGGTG
1 AAATACTAGACACAAGAAGACTTTAAACAATTAGCCCATCGGTG
64209672 AAATACT
1 AAATACT
64209679 GAACTTACAC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (44 bp):
AAATACTAGACACAAGAAGACTTTAAACAATTAGCCCATCGGTG
Found at i:64213449 original size:129 final size:129
Alignment explanation
Indices: 64213219--64213477 Score: 482
Period size: 129 Copynumber: 2.0 Consensus size: 129
64213209 TCAAACAAGC
64213219 TTCCCGTCAATGGTACCACAAGTTTCACCAAGTAATTGTCTCATTCAGTTTTGAGATGAATATTG
1 TTCCCGTCAATGGTACCACAAGTTTCACCAAGTAATTGTCTCATTCAGTTTTGAGATGAATATTG
64213284 TTGATAACTGTGTGTATCACAAATTCAATGTGGGTAAGTATATATTTTAGGTTCCACATTTCGA
66 TTGATAACTGTGTGTATCACAAATTCAATGTGGGTAAGTATATATTTTAGGTTCCACATTTCGA
64213348 TTCCCGTCAATGGTACCACAAGTTTCACCAAGTAATTGTCTCATTCAGTTTTGAGATGAATATTG
1 TTCCCGTCAATGGTACCACAAGTTTCACCAAGTAATTGTCTCATTCAGTTTTGAGATGAATATTG
** * *
64213413 TTGATAGTTGTGTGTATCACAAATTCAATGTGGGTAAGTGTATATTTTGGGTTCCACATTTCGA
66 TTGATAACTGTGTGTATCACAAATTCAATGTGGGTAAGTATATATTTTAGGTTCCACATTTCGA
64213477 T
1 T
64213478 GACATTTTTC
Statistics
Matches: 126, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
129 126 1.00
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (129 bp):
TTCCCGTCAATGGTACCACAAGTTTCACCAAGTAATTGTCTCATTCAGTTTTGAGATGAATATTG
TTGATAACTGTGTGTATCACAAATTCAATGTGGGTAAGTATATATTTTAGGTTCCACATTTCGA
Found at i:64215873 original size:23 final size:23
Alignment explanation
Indices: 64215841--64215899 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
64215831 GTTTAAGCCT
*
64215841 CACACGCCCGTGTGGAGGCAATG
1 CACACACCCGTGTGGAGGCAATG
*
64215864 CACATACCCGTGTGGAGGCAATG
1 CACACACCCGTGTGGAGGCAATG
*
64215887 CACACGCCCGTGT
1 CACACACCCGTGT
64215900 CTCTTACCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.22, C:0.32, G:0.31, T:0.15
Consensus pattern (23 bp):
CACACACCCGTGTGGAGGCAATG
Found at i:64226354 original size:26 final size:24
Alignment explanation
Indices: 64226323--64226372 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
64226313 AAATAAAAAA
*
64226323 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
64226349 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
64226373 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:64226392 original size:21 final size:21
Alignment explanation
Indices: 64226343--64226401 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
64226333 ATAATAAATC
*
64226343 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
64226363 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
64226385 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
64226402 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:64228045 original size:20 final size:21
Alignment explanation
Indices: 64227996--64228047 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
64227986 TTATGCCACA
64227996 TCAG-TATTCTTATCCTGAATT
1 TCAGATATT-TTATCCTGAATT
64228017 TCAGA-ATTTTATCCTGAATT
1 TCAGATATTTTATCCTGAATT
*
64228037 TTA-ATATTTTA
1 TCAGATATTTTA
64228048 ATTTGAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 1 0.04
20 20 0.71
21 7 0.25
ACGTcount: A:0.29, C:0.13, G:0.08, T:0.50
Consensus pattern (21 bp):
TCAGATATTTTATCCTGAATT
Found at i:64228732 original size:53 final size:53
Alignment explanation
Indices: 64228652--64228758 Score: 196
Period size: 53 Copynumber: 2.0 Consensus size: 53
64228642 CTGAGTTGGG
*
64228652 ATCCAGTTGATGGGTGACACAAACTCAGTAAAAGCTTAATAAATAGTATATAT
1 ATCCAGTTGATGGGTGACACAAACTCAGTAAAAGCTTAATAAATAATATATAT
*
64228705 ATCCAGTTGATGGGTGACACCAACTCAGTAAAAGCTTAATAAATAATATATAT
1 ATCCAGTTGATGGGTGACACAAACTCAGTAAAAGCTTAATAAATAATATATAT
64228758 A
1 A
64228759 CACACAATTA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (53 bp):
ATCCAGTTGATGGGTGACACAAACTCAGTAAAAGCTTAATAAATAATATATAT
Found at i:64230830 original size:237 final size:239
Alignment explanation
Indices: 64230413--64230995 Score: 673
Period size: 236 Copynumber: 2.4 Consensus size: 239
64230403 AACCCAAATT
* * * * *
64230413 TGTGTTTAAAAATAACATACAATAAATAGTGAGACT-TATGGTTAGAAACTGATTAATAAAAACA
1 TGTGTTTAAAAATAACACACAATAAATAATGA-AATATATGGTTTGAAACT-ATTAATAATAACA
* * * * *
64230477 CATGAAATATGTATAATATTAAAATTTAAAAAAAAGATTAAATTGTTTATCATTGTGTTGTCATC
64 CATGAAAAATGTACAATATTAAAATTTAAAAAAAAGATTAAATTATTTATCAATATGTTGTCATC
*
64230542 AATCTTGAGTTGGTGTCGAGTTAATTAGAGACACTAACTCAATCAAATACATTACTAATA-TA-A
129 AATCTTAAGTTGGTGTCGAGTTAATTAGAGACACTAACTCAATCAAATACATTACTAATACTAGA
* * *
64230605 ATCT-TATCACATGCGTATA-TATGTAGAAACAAAAAATTTCGAAC-
194 ATCTCTATCACATGCGTATACGAT-TAAAAACAAAAAATTTAGAACA
* *
64230649 TGTGTTTAAAAATAACACACAATAAATAATGACATATATGGTTTGAAACTATTTAACAATAACAC
1 TGTGTTTAAAAATAACACACAATAAATAATGAAATATATGGTTTGAAACTA-TTAATAATAACAC
* * *
64230714 ATGAAAAATGTACATTATTATAATTTAAAAAATTAGATTAAATTATTTATCAATATGTTGTCATC
65 ATGAAAAATGTACAATATTAAAATTTAAAAAA-AAGATTAAATTATTTATCAATATGTTGTCATC
* *
64230779 AATCTTAAGTTGGTGTCGAGTTAACTT-GTGACAAC-AACTCAATCGAATACATTACTAATACTA
129 AATCTTAAGTTGGTGTCGAGTTAA-TTAGAGAC-ACTAACTCAATCAAATACATTACTAATACTA
* * * *
64230842 GAATTTCTATCACATGTGTATACGATTAAAAACCAAAATTTTAGAACATAAA
192 GAATCTCTATCACATGCGTATACGATTAAAAACAAAAAATTTAGAAC----A
* * * * *
64230894 TGTATGTTTAAAAATAAC-CTATAATAAATAATAAAACATATGGTTTGAAACTAACTGATAATAA
1 TG--TGTTTAAAAATAACAC-ACAATAAATAATGAAATATATGGTTTGAAACT-ATTAATAATAA
64230958 CACAT-AAAATATGTACAATATTAAAATTTATAAAAAAA
62 CACATGAAAA-ATGTACAATATTAAAATTTA-AAAAAAA
64230996 AATAAAAAAT
Statistics
Matches: 292, Mismatches: 35, Indels: 29
0.82 0.10 0.08
Matches are distributed among these distances:
235 2 0.01
236 82 0.28
237 79 0.27
238 6 0.02
239 4 0.01
240 31 0.11
241 2 0.01
245 2 0.01
246 5 0.02
247 73 0.25
248 6 0.02
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.33
Consensus pattern (239 bp):
TGTGTTTAAAAATAACACACAATAAATAATGAAATATATGGTTTGAAACTATTAATAATAACACA
TGAAAAATGTACAATATTAAAATTTAAAAAAAAGATTAAATTATTTATCAATATGTTGTCATCAA
TCTTAAGTTGGTGTCGAGTTAATTAGAGACACTAACTCAATCAAATACATTACTAATACTAGAAT
CTCTATCACATGCGTATACGATTAAAAACAAAAAATTTAGAACA
Found at i:64231095 original size:20 final size:19
Alignment explanation
Indices: 64231057--64231095 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
64231047 AAGTGTTGTG
*
64231057 AAAATGTGCTTTTAGACAT
1 AAAATGTGCTTTTAAACAT
*
64231076 AAAATGTTCATTTTAAACAT
1 AAAATGTGC-TTTTAAACAT
64231096 GATATTATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38
Consensus pattern (19 bp):
AAAATGTGCTTTTAAACAT
Found at i:64231353 original size:55 final size:55
Alignment explanation
Indices: 64231288--64231397 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
64231278 TTGTATTATT
*
64231288 TTAATAAATAATTTTATTTTAAAATGTAATTTGAATATGCAACACTAACAAATTA
1 TTAATAAATAATTTTATTTTAAAATGTAATTTGAATATACAACACTAACAAATTA
64231343 TTAATAAATAATTTTATTTTAAAATGTAATTTGAATATACAACACTAACAAATTA
1 TTAATAAATAATTTTATTTTAAAATGTAATTTGAATATACAACACTAACAAATTA
64231398 ATATTAACAG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.40
Consensus pattern (55 bp):
TTAATAAATAATTTTATTTTAAAATGTAATTTGAATATACAACACTAACAAATTA
Found at i:64231443 original size:16 final size:16
Alignment explanation
Indices: 64231421--64231507 Score: 120
Period size: 16 Copynumber: 5.4 Consensus size: 16
64231411 GTTTGGTTCA
*
64231421 CTGTAATGGAATAAAG
1 CTGTAATGGAATAGAG
* *
64231437 TTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
* *
64231453 CTGTAATAGAATAGAA
1 CTGTAATGGAATAGAG
64231469 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
64231485 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
*
64231501 TTGTAAT
1 CTGTAAT
64231508 CAGTAATTCA
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 62 1.00
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:64231801 original size:58 final size:57
Alignment explanation
Indices: 64231667--64231825 Score: 171
Period size: 58 Copynumber: 2.8 Consensus size: 57
64231657 TATTGTTATT
* * * * *
64231667 AAATTTTAATAAAATTACTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACC
1 AAATTTTAATATAATTATTATTAAATATAAATTAAT-AAAATAATAAATAATTTAACA
* * * * * *
64231725 ATATTTTAACATAGTTATTATTAAATATAACTTAATAAAATAATATATAATTTAATA
1 AAATTTTAATATAATTATTATTAAATATAAATTAATAAAATAATAAATAATTTAACA
*
64231782 AAATTCTTAATATAATTATTATT--ATATAAATTAA-AAAATCATAA
1 AAATT-TTAATATAATTATTATTAAATATAAATTAATAAAATAATAA
64231826 CTATTATTAT
Statistics
Matches: 84, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
55 8 0.10
56 10 0.12
57 22 0.26
58 44 0.52
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (57 bp):
AAATTTTAATATAATTATTATTAAATATAAATTAATAAAATAATAAATAATTTAACA
Found at i:64240039 original size:12 final size:11
Alignment explanation
Indices: 64240016--64240059 Score: 54
Period size: 12 Copynumber: 3.9 Consensus size: 11
64240006 ACTTTAGATT
64240016 ATATATATTATG
1 ATATATA-TATG
64240028 ATATAGTATATG
1 ATATA-TATATG
*
64240040 ATTTATATAT-
1 ATATATATATG
64240050 ATATATATAT
1 ATATATATAT
64240060 AAAAGTAGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 9 0.31
11 5 0.17
12 13 0.45
13 2 0.07
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (11 bp):
ATATATATATG
Found at i:64241330 original size:21 final size:22
Alignment explanation
Indices: 64241305--64241371 Score: 77
Period size: 21 Copynumber: 3.2 Consensus size: 22
64241295 TAATACCTAG
*
64241305 TCAAC-ATCGGTCAAATATTGG
1 TCAACTATCGGTCAAATATTGA
* *
64241326 TCAACTATCAGTC-AACATTGA
1 TCAACTATCGGTCAAATATTGA
*
64241347 TCAACTAT-GGTCAACTATTGA
1 TCAACTATCGGTCAAATATTGA
64241368 TCAA
1 TCAA
64241372 AGTATTTTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
20 3 0.08
21 29 0.76
22 6 0.16
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (22 bp):
TCAACTATCGGTCAAATATTGA
Found at i:64257771 original size:13 final size:13
Alignment explanation
Indices: 64257753--64257777 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64257743 TGATTTAAAT
64257753 AAAATAATTTTAA
1 AAAATAATTTTAA
64257766 AAAATAATTTTA
1 AAAATAATTTTA
64257778 TTTAAATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAAATAATTTTAA
Found at i:64268058 original size:40 final size:40
Alignment explanation
Indices: 64268014--64268237 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
64268004 AAGTGAATAT
* * * * **
64268014 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
64268054 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
64268094 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
64268134 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
64268174 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
64268213 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
64268238 TGAACGAGGA
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.20
40 136 0.80
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:64268112 original size:80 final size:80
Alignment explanation
Indices: 64267975--64268237 Score: 318
Period size: 80 Copynumber: 3.3 Consensus size: 80
64267965 TTGAATGCTG
* * * * *
64267975 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
*
64268037 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
64268055 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
64268120 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * *
64268135 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
64268199 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
64268214 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
64268238 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 35 0.22
80 116 0.73
81 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:64268189 original size:120 final size:120
Alignment explanation
Indices: 64267975--64268237 Score: 318
Period size: 120 Copynumber: 2.2 Consensus size: 120
64267965 TTGAATGCTG
* * *
64267975 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
* **
64268039 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * *
64268095 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAG-TGAATAAATCCGGATTAAGAT-CCGAAGGCA
* ** * *
64268157 TTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
64268214 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
64268238 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 34 0.28
120 80 0.66
121 8 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:64276099 original size:40 final size:40
Alignment explanation
Indices: 64276068--64276158 Score: 148
Period size: 40 Copynumber: 2.3 Consensus size: 40
64276058 GGACTAAGAT
* *
64276068 CCGAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
64276108 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
64276148 CCGAAGGCATT
1 CCGAAGGCATT
64276159 GTATGAGTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 2 0.04
40 46 0.96
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
Found at i:64276179 original size:39 final size:40
Alignment explanation
Indices: 64276068--64276195 Score: 134
Period size: 40 Copynumber: 3.2 Consensus size: 40
64276058 GGACTAAGAT
* * * * *
64276068 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
1 CCGAAGGCATTCGTACGAGTTCTAAAATCCGGGTTAAGTC
* *
64276108 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTACGAGTTCTAAAATCCGGGTTAAGTC
* * * *
64276148 CCGAAGGCATT-GTATGAGTTACTATAA-CCGGGCTATGTC
1 CCGAAGGCATTCGTACGAGTT-CTAAAATCCGGGTTAAGTC
64276187 CCGAAGGCA
1 CCGAAGGCA
64276196 CTTGAACGAG
Statistics
Matches: 77, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 26 0.34
40 51 0.66
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTACGAGTTCTAAAATCCGGGTTAAGTC
Found at i:64278158 original size:51 final size:51
Alignment explanation
Indices: 64278077--64278196 Score: 177
Period size: 51 Copynumber: 2.4 Consensus size: 51
64278067 ACACGGATCA
*
64278077 CATTTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
1 CATTTATCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTAC
* * * *
64278128 CTTTTATCACTTGTCACTTGTCACTAATCAGATAATTGTAGCTGAGGCTAC
1 CATTTATCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTAC
* *
64278179 CACTTATCGCTTGTCACT
1 CATTTATCACTTGTCACT
64278197 GATCAAAAGT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (51 bp):
CATTTATCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTAC
Found at i:64279181 original size:13 final size:13
Alignment explanation
Indices: 64279163--64279188 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64279153 GTCGATGCCA
64279163 GAACACTTTTACT
1 GAACACTTTTACT
64279176 GAACACTTTTACT
1 GAACACTTTTACT
64279189 AACGGTACCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (13 bp):
GAACACTTTTACT
Found at i:64285902 original size:47 final size:46
Alignment explanation
Indices: 64285837--64285963 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 46
64285827 TATACGTGCT
* *
64285837 GATGCATGTCCCAGACATGTCTTACACTGGCACTTAT-CTCTACACA
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATAATCTAC-CA
* * * * *
64285883 GATGCCATGTCCCAGACATGGTCTTACGCTGGCAATCATAATGTGCCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATAATCTACCA
*
64285931 GATGCATGTCCCAGACATGTCTTACTCTGGCAC
1 GATGCATGTCCCAGACATGTCTTACACTGGCAC
64285964 ACAAGAAATT
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
46 17 0.25
47 28 0.41
48 21 0.30
49 3 0.04
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACTCATAATCTACCA
Found at i:64285961 original size:94 final size:95
Alignment explanation
Indices: 64285787--64285963 Score: 250
Period size: 94 Copynumber: 1.9 Consensus size: 95
64285777 CATCGAGGCT
* ** *
64285787 GATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTATATACGTGCTGATGCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCAATCG-ATATACGTGCCGATGCATGTCCCAGA
64285852 CATGTCTTACACTGGCACTTATCTCTACACA
65 CATGTCTTACACTGGCACTTATCTCTACACA
* * *
64285883 GATGCCATGTCCCAGACATGGTCTTACGCTGGCAATC-ATA-ATGTGCCCGATGCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCAATCGATATACGTG-CCGATGCATGTCCCAGA
*
64285946 CATGTCTTACTCTGGCAC
65 CATGTCTTACACTGGCAC
64285964 ACAAGAAATT
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
93 4 0.06
94 36 0.50
96 32 0.44
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (95 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCAATCGATATACGTGCCGATGCATGTCCCAGAC
ATGTCTTACACTGGCACTTATCTCTACACA
Found at i:64286695 original size:12 final size:12
Alignment explanation
Indices: 64286678--64286702 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64286668 CAAAAATATA
64286678 AAAATCATCAAG
1 AAAATCATCAAG
64286690 AAAATCATCAAG
1 AAAATCATCAAG
64286702 A
1 A
64286703 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:64290456 original size:16 final size:16
Alignment explanation
Indices: 64290435--64290466 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
64290425 TTTATATCCC
64290435 GAGAATATATTAAATA
1 GAGAATATATTAAATA
64290451 GAGAATATATTAAATA
1 GAGAATATATTAAATA
64290467 TTCTCTTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.31
Consensus pattern (16 bp):
GAGAATATATTAAATA
Found at i:64291036 original size:17 final size:17
Alignment explanation
Indices: 64291014--64291064 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
64291004 CAAGTTGGAA
64291014 TTAAGAATTTATAATAT
1 TTAAGAATTTATAATAT
* *
64291031 TTAAGATTTTTCTAAT-T
1 TTAAGA-ATTTATAATAT
*
64291048 CTAA-AATTTATAATAT
1 TTAAGAATTTATAATAT
64291064 T
1 T
64291065 CAAGTTATAA
Statistics
Matches: 26, Mismatches: 6, Indels: 5
0.70 0.16 0.14
Matches are distributed among these distances:
15 7 0.27
16 2 0.08
17 10 0.38
18 7 0.27
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (17 bp):
TTAAGAATTTATAATAT
Found at i:64296006 original size:32 final size:32
Alignment explanation
Indices: 64295947--64296008 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
64295937 CGTACCTTGT
*
64295947 GGAGCTACCGAGGCATACTGAGGAATCGGAAG
1 GGAGCTACCGAGGCATACTGAGAAATCGGAAG
* *
64295979 GGAGCTACC-AGGGCATATTGATAAATCGGA
1 GGAGCTACCGA-GGCATACTGAGAAATCGGA
64296009 GGAGGTGAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 1 0.04
32 25 0.96
ACGTcount: A:0.32, C:0.18, G:0.34, T:0.16
Consensus pattern (32 bp):
GGAGCTACCGAGGCATACTGAGAAATCGGAAG
Found at i:64297849 original size:47 final size:46
Alignment explanation
Indices: 64297641--64297951 Score: 197
Period size: 47 Copynumber: 6.6 Consensus size: 46
64297631 TTACCGATAT
*
64297641 CATGTCCCAGACATGGTCTTACACTGGCTATCATCATCGAGGCCGATG
1 CATGTCCCAGAC-TTGTCTTACACTGGC-ATCATCATCGAGGCCGATG
* * * * * * *
64297689 CCATGTCCTAGACATGGTCTTATACTAGCTCTCGTAT-ATACG-TGCTGATG
1 -CATGTCCCAGAC-TTGTCTTACACTGGC-ATC--ATCAT-CGAGGCCGATG
* * * *
64297739 CATGTCCCAGACATGTCTTACACTGGCA-CAAC-TCTTAGG-CAATG
1 CATGTCCCAGACTTGTCTTACACTGGCATCATCATC-GAGGCCGATG
* *
64297783 CATGCCCCAGA-TATGTCTTACACTGGCTATCATCGTCGAGGCCGATG
1 CATGTCCCAGACT-TGTCTTACACTGGC-ATCATCATCGAGGCCGATG
* * * *
64297830 CATGTCCCAAACTTGTCTTACACTGGCACTCATC-TCTACGCCAATG
1 CATGTCCCAGACTTGTCTTACACTGGCA-TCATCATCGAGGCCGATG
* * * * * *
64297876 CTATGTCCCAAAAATGGTCTTACACTGGCACTCATAAT-GTGCCCGATG
1 C-ATGTCCC-AGACTTGTCTTACACTGGCA-TCATCATCGAGGCCGATG
* *
64297924 CATGTTCCAGACATGTCTTACACTGGCA
1 CATGTCCCAGACTTGTCTTACACTGGCA
64297952 CACAAGAAAT
Statistics
Matches: 206, Mismatches: 40, Indels: 35
0.73 0.14 0.12
Matches are distributed among these distances:
43 1 0.00
44 29 0.14
45 2 0.01
46 34 0.17
47 47 0.23
48 41 0.20
49 40 0.19
50 8 0.04
51 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACTTGTCTTACACTGGCATCATCATCGAGGCCGATG
Found at i:64298682 original size:12 final size:12
Alignment explanation
Indices: 64298665--64298689 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64298655 CAAAAATGTA
64298665 AAAATCATCAAG
1 AAAATCATCAAG
64298677 AAAATCATCAAG
1 AAAATCATCAAG
64298689 A
1 A
64298690 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:64299515 original size:44 final size:44
Alignment explanation
Indices: 64299443--64299539 Score: 149
Period size: 44 Copynumber: 2.2 Consensus size: 44
64299433 TCACATTTAT
* * *
64299443 CACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTGTCACTAATCAAATAAGTGTAGCTAAAGCTAC
* *
64299487 CACTTATCACTTGTCACTAATCAAATAAGTGTAGCTGAGGCTAC
1 CACTTATCACTTGTCACTAATCAAATAAGTGTAGCTAAAGCTAC
64299531 CACTTATCA
1 CACTTATCA
64299540 TTTATCATTG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (44 bp):
CACTTATCACTTGTCACTAATCAAATAAGTGTAGCTAAAGCTAC
Found at i:64306179 original size:245 final size:245
Alignment explanation
Indices: 64305749--64306372 Score: 1239
Period size: 245 Copynumber: 2.5 Consensus size: 245
64305739 TAAATTATCC
*
64305749 TTTTTGATCAATAAAGTACATTTTCTATTGCTTTCATATTTTTTTTTGTTCTTTATTCTTCTCAT
1 TTTTTGATCAATAAAATACATTTTCTATTGCTTTCATATTTTTTTTTGTTCTTTATTCTTCTCAT
64305814 TTCTCTTTATTTTATAACAATTGTTTCGTTTATTTTCAATACAGTGTGATCTACAGTTTCGAATA
66 TTCTCTTTATTTTATAACAATTGTTTCGTTTATTTTCAATACAGTGTGATCTACAGTTTCGAATA
64305879 AAAAAAATTTTAATATCTACATAAATTTTTAATAAATTAAATATAATTAATTATTACATTATAAT
131 AAAAAAATTTTAATATCTACATAAATTTTTAATAAATTAAATATAATTAATTATTACATTATAAT
64305944 CAAAATATATAATTTACATATTTTAATCTTAAATAAATCAAAATATATAA
196 CAAAATATATAATTTACATATTTTAATCTTAAATAAATCAAAATATATAA
64305994 TTTTTGATCAATAAAATACATTTTCTATTGCTTTCATATTTTTTTTTGTTCTTTATTCTTCTCAT
1 TTTTTGATCAATAAAATACATTTTCTATTGCTTTCATATTTTTTTTTGTTCTTTATTCTTCTCAT
64306059 TTCTCTTTATTTTATAACAATTGTTTCGTTTATTTTCAATACAGTGTGATCTACAGTTTCGAATA
66 TTCTCTTTATTTTATAACAATTGTTTCGTTTATTTTCAATACAGTGTGATCTACAGTTTCGAATA
64306124 AAAAAAATTTTAATATCTACATAAATTTTTAATAAATTAAATATAATTAATTATTACATTATAAT
131 AAAAAAATTTTAATATCTACATAAATTTTTAATAAATTAAATATAATTAATTATTACATTATAAT
64306189 CAAAATATATAATTTACATATTTTAATCTTAAATAAATCAAAATATATAA
196 CAAAATATATAATTTACATATTTTAATCTTAAATAAATCAAAATATATAA
64306239 TTTTTGATCAATAAAATACATTTTCTATTGCTTTCATATTTTTTTTTGTTCTTTATTCTTCTCAT
1 TTTTTGATCAATAAAATACATTTTCTATTGCTTTCATATTTTTTTTTGTTCTTTATTCTTCTCAT
64306304 TTCTCTTTATTTTATAACAATTGTTTCGTTTATTTTCAATACAGTGTGATCTACAGTTTCGAATA
66 TTCTCTTTATTTTATAACAATTGTTTCGTTTATTTTCAATACAGTGTGATCTACAGTTTCGAATA
64306369 AAAA
131 AAAA
64306373 GTAAATAAAT
Statistics
Matches: 378, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
245 378 1.00
ACGTcount: A:0.35, C:0.11, G:0.05, T:0.49
Consensus pattern (245 bp):
TTTTTGATCAATAAAATACATTTTCTATTGCTTTCATATTTTTTTTTGTTCTTTATTCTTCTCAT
TTCTCTTTATTTTATAACAATTGTTTCGTTTATTTTCAATACAGTGTGATCTACAGTTTCGAATA
AAAAAAATTTTAATATCTACATAAATTTTTAATAAATTAAATATAATTAATTATTACATTATAAT
CAAAATATATAATTTACATATTTTAATCTTAAATAAATCAAAATATATAA
Found at i:64313310 original size:50 final size:49
Alignment explanation
Indices: 64313185--64313373 Score: 243
Period size: 50 Copynumber: 3.8 Consensus size: 49
64313175 TAGCCAAAGC
* * *
64313185 TATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * *
64313234 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * *
64313284 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * *
64313335 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGATACACATAGTAGCCTGCACTTAGTACTACACA
64313374 TGCGACCTCA
Statistics
Matches: 122, Mismatches: 15, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
49 41 0.34
50 46 0.38
51 35 0.29
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:64313372 original size:101 final size:99
Alignment explanation
Indices: 64313186--64313373 Score: 286
Period size: 99 Copynumber: 1.9 Consensus size: 99
64313176 AGCCAAAGCT
* * * *
64313186 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGT
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGT
64313251 AGCCTGCACTTAGTACTACACACGTGACCTAACC
66 AGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * *
64313285 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCGGGTACACATA
64313350 GTAGCCTGCACTTAGTACTACACA
64 GTAGCCTGCACTTAGTACTACACA
64313374 TGCGACCTCA
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
99 39 0.49
100 3 0.04
101 37 0.47
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (99 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGT
AGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:64313381 original size:101 final size:99
Alignment explanation
Indices: 64313186--64313381 Score: 284
Period size: 101 Copynumber: 2.0 Consensus size: 99
64313176 AGCCAAAGCT
* * * *
64313186 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGT
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGT
*
64313251 AGCCTGCACTTAGTACTACACACGTGACCTAACC
66 AGCCTGCACTTAGTACTACACACGCGACCTAACC
* * * *
64313285 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCGGGTACACATA
*
64313350 GTAGCCTGCACTTAGTACTACACATGCGACCT
64 GTAGCCTGCACTTAGTACTACACACGCGACCT
64313382 CACAATAGAT
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
99 39 0.46
100 3 0.04
101 43 0.51
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (99 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGT
AGCCTGCACTTAGTACTACACACGCGACCTAACC
Found at i:64314582 original size:28 final size:27
Alignment explanation
Indices: 64314527--64314611 Score: 111
Period size: 27 Copynumber: 3.1 Consensus size: 27
64314517 AGCATGGCTG
* *
64314527 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
64314553 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
64314581 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
64314608 CCAG
1 CCAG
64314612 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
26 5 0.09
27 31 0.58
28 17 0.32
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:64320479 original size:38 final size:37
Alignment explanation
Indices: 64320436--64320511 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 37
64320426 CAAATTCGGA
*
64320436 TCTTTCCCTAACATTATACATTATAAACTCTTATAGT
1 TCTTTCCCTAACATTAAACATTATAAACTCTTATAGT
64320473 TNCTTTCCCTAACATTAAACATTATAAACTCTTATAGT
1 T-CTTTCCCTAACATTAAACATTATAAACTCTTATAGT
64320511 T
1 T
64320512 ATCAATTTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 1 0.03
38 36 0.97
ACGTcount: A:0.33, C:0.21, G:0.03, T:0.42
Consensus pattern (37 bp):
TCTTTCCCTAACATTAAACATTATAAACTCTTATAGT
Found at i:64324318 original size:21 final size:19
Alignment explanation
Indices: 64324289--64324332 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
64324279 TATTCATTTG
*
64324289 TTCATATTTCATTTGCACATA
1 TTCACATTTCATTT-C-CATA
*
64324310 TTCACATTTGATTTCCATA
1 TTCACATTTCATTTCCATA
64324329 TTCA
1 TTCA
64324333 TCACATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 8 0.38
20 1 0.05
21 12 0.57
ACGTcount: A:0.27, C:0.20, G:0.05, T:0.48
Consensus pattern (19 bp):
TTCACATTTCATTTCCATA
Found at i:64324580 original size:42 final size:42
Alignment explanation
Indices: 64324495--64324611 Score: 123
Period size: 42 Copynumber: 2.8 Consensus size: 42
64324485 CGAAAAGCTC
* * * * * *
64324495 ATACAATGCCAATGTCCCAGGCGTGGTCTTACATGTAATCAA
1 ATACGATGCCGATATCCCAGACTTGGTCTTACATGTAACCAA
64324537 ATATCGATGCC-ATTATCCCAGACTT-GTCTTACAT-TAAACCAA
1 ATA-CGATGCCGA-TATCCCAGACTTGGTCTTACATGT-AACCAA
*
64324579 ATACGATGCCGATGTCCCAGACTTGGTCTTACA
1 ATACGATGCCGATATCCCAGACTTGGTCTTACA
64324612 CATAAATCTC
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
41 19 0.30
42 30 0.47
43 15 0.23
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (42 bp):
ATACGATGCCGATATCCCAGACTTGGTCTTACATGTAACCAA
Found at i:64324641 original size:44 final size:42
Alignment explanation
Indices: 64324552--64324653 Score: 111
Period size: 44 Copynumber: 2.4 Consensus size: 42
64324542 GATGCCATTA
* * * *
64324552 TCCCAGACTT-GTCTTACATTAAACCAAATACGATGCCGATG
1 TCCCAGACTTGGTCTTACAATAAACCAAATACGATGACAACG
64324593 TCCCAGACTTGGTCTTACACATAAATCTCAAAT-CGATGACAACG
1 TCCCAGACTTGGTCTTACA-ATAAA-C-CAAATACGATGACAACG
64324637 TCCCAGA-TGTGGTCTTA
1 TCCCAGACT-TGGTCTTA
64324654 TATGATATCA
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
41 10 0.19
42 8 0.15
43 5 0.10
44 24 0.46
45 5 0.10
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (42 bp):
TCCCAGACTTGGTCTTACAATAAACCAAATACGATGACAACG
Found at i:64330422 original size:33 final size:34
Alignment explanation
Indices: 64330356--64330423 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 34
64330346 AACAGTGCAT
* * * *
64330356 ACAGTAACAGTTTGGGCCTGAGCCTTATTCAGTA
1 ACAGTAACAGTCTGGGCCTGAACCCTATACAGTA
*
64330390 ACAGT-ACAGTCTGGGCCTTAACCCTATACAGTA
1 ACAGTAACAGTCTGGGCCTGAACCCTATACAGTA
64330423 A
1 A
64330424 TGGTGTGGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
33 24 0.83
34 5 0.17
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (34 bp):
ACAGTAACAGTCTGGGCCTGAACCCTATACAGTA
Found at i:64330636 original size:27 final size:27
Alignment explanation
Indices: 64330606--64330662 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
64330596 AGCATAGTTG
*
64330606 CCAGAAAT-AGTAAGTGTGGCAAAGCTA
1 CCAG-AATCAGTAAGTGTGGCAAAGCCA
* * *
64330633 CCAGTATCAGTAATTGTGGCATAGCCA
1 CCAGAATCAGTAAGTGTGGCAAAGCCA
64330660 CCA
1 CCA
64330663 ATAACAGTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 2 0.08
27 23 0.92
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
CCAGAATCAGTAAGTGTGGCAAAGCCA
Found at i:64330670 original size:27 final size:27
Alignment explanation
Indices: 64330614--64330670 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
64330604 TGCCAGAAAT
* * *
64330614 AGTAAGTGTGGCAAAGCTACCAGTATC
1 AGTAAGTGTGGCAAAGCCACCAATAAC
* *
64330641 AGTAATTGTGGCATAGCCACCAATAAC
1 AGTAAGTGTGGCAAAGCCACCAATAAC
64330668 AGT
1 AGT
64330671 GAATATGACA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (27 bp):
AGTAAGTGTGGCAAAGCCACCAATAAC
Found at i:64331048 original size:27 final size:27
Alignment explanation
Indices: 64330834--64331059 Score: 265
Period size: 27 Copynumber: 8.4 Consensus size: 27
64330824 AGGGCTACTC
* * * *
64330834 GTCATTTTGCCATACAGGGGTA-TCCAA
1 GTCATTTTACCCTACAGGGGTATTAC-G
* *
64330861 GTCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
64330888 ATCATTTTACCCTACAGGGGTATTATG
1 GTCATTTTACCCTACAGGGGTATTACG
*
64330915 GTCATTTTACCCTACAGGGGTATTATG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * *
64330942 GTCATTTTACCTTAGAAGGCTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
64330969 GTCATTTTATCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
64330996 ATCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
64331023 GTTATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
64331050 GTTATTTTAC
1 GTCATTTTAC
64331060 TAATTTTGGG
Statistics
Matches: 170, Mismatches: 28, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
27 168 0.99
28 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:64336209 original size:125 final size:125
Alignment explanation
Indices: 64335985--64336233 Score: 417
Period size: 125 Copynumber: 2.0 Consensus size: 125
64335975 TTATATTCAT
*
64335985 ACACAAAAGATCAACTTAGCCAAAGGATGGCAGCTCATTTATCGACTGAGCGAATAATAATTGTA
1 ACACAAAAGATCAACTTAGCCAAAGGACGGCAGCTCATTTATCGACTGAGCGAATAATAATTGTA
* *
64336050 AGGGATCAACTAAATCAATGCATATACGAGACATACCTCATTGCTAGGATTTTACGAGCA
66 AGGGATCAACTAAATCAATGCATATACGAAACATACCTCATCGCTAGGATTTTACGAGCA
* * * *
64336110 ACACAAAAGATCAACTTAGCCAAAGGCCGGTAGCTCATTTATCGACTGAGCGAATACTATTTGTA
1 ACACAAAAGATCAACTTAGCCAAAGGACGGCAGCTCATTTATCGACTGAGCGAATAATAATTGTA
* *
64336175 AGGGATCAACTAATTCAATGCATATACGAAACATACCTCATCGCTGGGATTTTACGAGC
66 AGGGATCAACTAAATCAATGCATATACGAAACATACCTCATCGCTAGGATTTTACGAGC
64336234 GTATTAATTG
Statistics
Matches: 115, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
125 115 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.24
Consensus pattern (125 bp):
ACACAAAAGATCAACTTAGCCAAAGGACGGCAGCTCATTTATCGACTGAGCGAATAATAATTGTA
AGGGATCAACTAAATCAATGCATATACGAAACATACCTCATCGCTAGGATTTTACGAGCA
Found at i:64336401 original size:40 final size:40
Alignment explanation
Indices: 64336283--64336499 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
64336273 AAGCCAAGTA
* * * * *
64336283 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATT
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
64336322 CCTTCGGGACATAGCCCGG-TATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
64336361 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
64336401 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
64336441 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
64336481 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
64336500 TTATCATCCA
Statistics
Matches: 159, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 45 0.28
40 113 0.71
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:64336797 original size:136 final size:136
Alignment explanation
Indices: 64336553--64336824 Score: 526
Period size: 136 Copynumber: 2.0 Consensus size: 136
64336543 ATCTATATTT
64336553 CATTTTCATAATTAGAGTTCAAACACAAGTCACGTATTAAGCAATCCCATTTTCGGCTCACTAGC
1 CATTTTCATAATTAGAGTTCAAACACAAGTCACGTATTAAGCAATCCCATTTTCGGCTCACTAGC
*
64336618 CACATACAAACAACATGGTTTAGTTTGCTTTATGACACGATCTCTATGCACATACGGCTACCCGT
66 CACATACAAACAACATGGTTTAGTTTGCTTTATGACACGATCTCTATGCACATACGGCTACCCAT
64336683 CATACG
131 CATACG
64336689 CATTTTCATAATTAGAGTTCAAACACAAGTCACGTATTAAGCAATCCCATTTTCGGCTCACTAGC
1 CATTTTCATAATTAGAGTTCAAACACAAGTCACGTATTAAGCAATCCCATTTTCGGCTCACTAGC
*
64336754 CACATACAAACAGCATGGTTTAGTTTGCTTTATGACACGATCTCTATGCACATACGGCTACCCAT
66 CACATACAAACAACATGGTTTAGTTTGCTTTATGACACGATCTCTATGCACATACGGCTACCCAT
64336819 CATACG
131 CATACG
64336825 TCACTAGCCA
Statistics
Matches: 134, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
136 134 1.00
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (136 bp):
CATTTTCATAATTAGAGTTCAAACACAAGTCACGTATTAAGCAATCCCATTTTCGGCTCACTAGC
CACATACAAACAACATGGTTTAGTTTGCTTTATGACACGATCTCTATGCACATACGGCTACCCAT
CATACG
Found at i:64336877 original size:79 final size:79
Alignment explanation
Indices: 64336746--64336903 Score: 298
Period size: 79 Copynumber: 2.0 Consensus size: 79
64336736 CATTTTCGGC
*
64336746 TCACTAGCCACATACAAACAGCATGGTTTAGTTTGCTTTATGACACGATCTCTATGCACATACGG
1 TCACTAGCCACATACAAACAACATGGTTTAGTTTGCTTTATGACACGATCTCTATGCACATACGG
64336811 CTACCCATCATACG
66 CTACCCATCATACG
64336825 TCACTAGCCACATACAAACAACATGGTTTAGTTTGCTTTATGACACGATCTCTATGCACATACGG
1 TCACTAGCCACATACAAACAACATGGTTTAGTTTGCTTTATGACACGATCTCTATGCACATACGG
*
64336890 CTACCCGTCATACG
66 CTACCCATCATACG
64336904 CATAGACTAA
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 77 1.00
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (79 bp):
TCACTAGCCACATACAAACAACATGGTTTAGTTTGCTTTATGACACGATCTCTATGCACATACGG
CTACCCATCATACG
Found at i:64338089 original size:33 final size:35
Alignment explanation
Indices: 64338024--64338091 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
64338014 TAATCTAGTA
*
64338024 AACCACCATTGCCGATTTTTCTCCAAGCTCTTTCC
1 AACCACCATAGCCGATTTTTCTCCAAGCTCTTTCC
64338059 AACCACCATAGCCGA-TTTTCT-CAAGCTCTTTCC
1 AACCACCATAGCCGATTTTTCTCCAAGCTCTTTCC
64338092 CTTCCTTTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 12 0.38
34 6 0.19
35 14 0.44
ACGTcount: A:0.22, C:0.37, G:0.09, T:0.32
Consensus pattern (35 bp):
AACCACCATAGCCGATTTTTCTCCAAGCTCTTTCC
Found at i:64338661 original size:48 final size:48
Alignment explanation
Indices: 64338605--64338908 Score: 275
Period size: 48 Copynumber: 6.4 Consensus size: 48
64338595 TGTCATAAGC
* **
64338605 CATGGTCTTACACTAGCTCTCTTCTCAATGCTAATGCCATGTCCCAGA
1 CATGGTCTTACACTAGCTCTCTTATCAATGCCGATGCCATGTCCCAGA
*
64338653 CATGGTCTTACACTAGCTCTC--ATAATATGGCCGATGCCATGTCCCAGA
1 CATGGTCTTACACTAGCTCTCTTATCA-AT-GCCGATGCCATGTCCCAGA
* * * * * *
64338701 CATGGTCTTTCACTAGCGCACATATCAATGCCGATGTCATGTCTCAGA
1 CATGGTCTTACACTAGCTCTCTTATCAATGCCGATGCCATGTCCCAGA
* *
64338749 CATGGTCTTACACTGGCTCT-TATATC-GTGGCCGATGCCATGTCCCAGA
1 CATGGTCTTACACTAGCTCTCT-TATCAAT-GCCGATGCCATGTCCCAGA
* * *
64338797 CATGGTCTTACACT-G-GCTCATAGTCAACGCCGATGCCATGT-CCA-A
1 CATGGTCTTACACTAGCTCTCTTA-TCAATGCCGATGCCATGTCCCAGA
* ** ** * *
64338842 CCTGGTCTTACACTAGCTCTAATAT-GGTGGCCGACGCCATGTCCCAAA
1 CATGGTCTTACACTAGCTCTCTTATCAAT-GCCGATGCCATGTCCCAGA
* *
64338890 CACGGTCTTACACTCGCTC
1 CATGGTCTTACACTAGCTC
64338909 ACATATCACC
Statistics
Matches: 210, Mismatches: 32, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
45 14 0.07
46 23 0.11
47 27 0.13
48 141 0.67
49 2 0.01
50 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (48 bp):
CATGGTCTTACACTAGCTCTCTTATCAATGCCGATGCCATGTCCCAGA
Found at i:64338780 original size:96 final size:94
Alignment explanation
Indices: 64338605--64338916 Score: 369
Period size: 96 Copynumber: 3.3 Consensus size: 94
64338595 TGTCATAAGC
* * * * **
64338605 CATGGTCTTACACTAGCTCTCTTCTCAATGCTAATGCCATGTCCCAGACATGGTCTTACACTAGC
1 CATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGT-CCAGACATGGTCTTACACTAGC
* *
64338670 TCTCATAATATGGCCGATGCCATGTCCCAGA
65 TCTAAT-ATGTGGCCGATGCCATGTCCCAGA
* * *
64338701 CATGGTCTTTCACTAGCGCACATATCAATGCCGATGTCATGTCTCAGACATGGTCTTACACTGGC
1 CATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTC-CAGACATGGTCTTACACTAGC
*
64338766 TCTTATATCGTGGCCGATGCCATGTCCCAGA
65 TCTAATAT-GTGGCCGATGCCATGTCCCAGA
* * *
64338797 CATGGTCTTACACT-G-GCTCATAGTCAACGCCGATGCCATGTCCA-ACCTGGTCTTACACTAGC
1 CATGGTCTTACACTAGCGCACATA-TCAATGCCGATGCCATGTCCAGACATGGTCTTACACTAGC
* *
64338859 TCTAATATGGTGGCCGACGCCATGTCCCAAA
65 TCTAATAT-GTGGCCGATGCCATGTCCCAGA
* * *
64338890 CACGGTCTTACACTCGCTCACATATCA
1 CATGGTCTTACACTAGCGCACATATCA
64338917 CCCAAATGTC
Statistics
Matches: 187, Mismatches: 24, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
93 56 0.30
94 12 0.06
95 26 0.14
96 93 0.50
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (94 bp):
CATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCAGACATGGTCTTACACTAGCT
CTAATATGTGGCCGATGCCATGTCCCAGA
Found at i:64350024 original size:40 final size:40
Alignment explanation
Indices: 64349980--64350349 Score: 528
Period size: 40 Copynumber: 9.2 Consensus size: 40
64349970 GGGCTAAATC
64349980 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
64350020 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* * * *
64350060 CCGAAGAGTATTCGTGCTAGTGATGTATCCGGGCTAAATC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* *
64350100 CCGAAGAGCATTCATGCTAGTGAAGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* * * *
64350140 CTGAAGAGCATTCGTGCTAGTGATATATCCAGG-CTAAATC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCC-GGACTAAGTT
64350180 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
64350220 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* ***
64350260 CCGAAGAGCATTCGTGCTAGTGATATATCCGTG-CTAAACC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCG-GACTAAGTT
* * * * * *
64350300 CCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
64350340 CCGAAGAGCA
1 CCGAAGAGCA
64350350 ATCATGCTGG
Statistics
Matches: 297, Mismatches: 29, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
39 3 0.01
40 291 0.98
41 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
Found at i:64350184 original size:120 final size:119
Alignment explanation
Indices: 64349967--64350362 Score: 594
Period size: 120 Copynumber: 3.3 Consensus size: 119
64349957 GAGTGAAATG
*
64349967 TCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATT
* * * *
64350032 CGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGTATTCGTGCTAGTGATGTA
66 CGTGCTAGTGATATATCCGG-CTAAATCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
64350087 TCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTGAAGTATCCGGACTAAGTTCTGAAGAGCATT
1 TCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATT
64350152 CGTGCTAGTGATATATCCAGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTA
66 CGTGCTAGTGATATATCC-GGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTA
* * * *
64350207 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATT
* * * *
64350272 CGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
66 CGTGCTAGTGATATATCCG-GCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTA
** * *
64350327 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTGA
64350363 CGTGTATTCG
Statistics
Matches: 251, Mismatches: 23, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
119 1 0.00
120 248 0.99
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATT
CGTGCTAGTGATATATCCGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:64360591 original size:26 final size:26
Alignment explanation
Indices: 64360562--64360621 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
64360552 TCCCTTTGAA
* * *
64360562 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
64360588 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
64360616 CCATTC
1 TCATTC
64360622 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:64360607 original size:28 final size:28
Alignment explanation
Indices: 64360576--64360647 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
64360566 TCGATATTTT
*
64360576 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
64360604 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
64360632 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
64360648 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:64364207 original size:40 final size:40
Alignment explanation
Indices: 64364055--64364200 Score: 163
Period size: 40 Copynumber: 3.6 Consensus size: 40
64364045 TTGAATGATG
* * * *
64364055 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
64364095 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64364135 TCCGGGTTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
**
64364176 -CCGGGCTGTGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64364201 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 79 0.88
41 10 0.11
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64372300 original size:30 final size:30
Alignment explanation
Indices: 64372266--64372326 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
64372256 TCCTTAACTC
64372266 AAACTTTTGCAAAATTAAAATTTTGCCCCT
1 AAACTTTTGCAAAATTAAAATTTTGCCCCT
* * * *
64372296 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTAAAATTTTGCCCCT
64372326 A
1 A
64372327 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTAAAATTTTGCCCCT
Done.